Query gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 323
No_of_seqs 170 out of 1571
Neff 6.2
Searched_HMMs 23785
Date Tue May 31 21:44:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780493.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cnq_A Phosphoribosylaminoimid 100.0 0 0 612.2 20.7 280 2-295 1-305 (306)
2 2ywv_A Phosphoribosylaminoimid 100.0 0 0 525.6 18.8 235 8-293 2-240 (244)
3 2z02_A Phosphoribosylaminoimid 100.0 0 0 512.1 18.5 237 1-289 1-239 (242)
4 3kre_A Phosphoribosylaminoimid 100.0 0 0 497.9 18.9 234 8-292 21-260 (263)
5 1kut_A Phosphoribosylaminoimid 100.0 0 0 497.7 17.6 222 14-289 1-224 (230)
6 3nua_A Phosphoribosylaminoimid 100.0 0 0 490.9 18.9 233 6-290 2-237 (238)
7 2gqr_A Phosphoribosylaminoimid 100.0 0 0 488.5 19.7 233 9-294 1-236 (237)
8 2h31_A Multifunctional protein 100.0 0 0 483.4 11.7 259 13-314 11-291 (425)
9 3o96_A RAC-alpha serine/threon 27.8 26 0.0011 14.1 8.6 110 165-297 244-354 (446)
10 2kng_A Protein LSR2; DNA-bindi 22.4 33 0.0014 13.5 3.2 30 247-277 13-42 (55)
No 1
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A*
Probab=100.00 E-value=0 Score=612.17 Aligned_cols=280 Identities=34% Similarity=0.626 Sum_probs=259.0
Q ss_pred CCCCCCCCCC-CCEEEECCEEEEEECCCCCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCEECCC
Q ss_conf 5300054889-960230440265875999489998188125557657-77878899999999999985410233121357
Q gi|254780493|r 2 RILSKAYIPE-LPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDICSNHTLDYP 79 (323)
Q Consensus 2 ~~l~~~~~~~-l~liy~GKvk~vY~~~d~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~i~tH~i~~~ 79 (323)
.++++|++++ ||++|+||||+||+++++.+||+|||||||||++++ .|||||++||+||+|||++|+++|+||||+.+
T Consensus 1 ~~~~~~~~~~~l~liy~GKvK~vY~~d~~~ll~~~~DriSafD~~~~~~Ip~KG~~l~~iS~~~F~~l~~gi~tH~i~~~ 80 (306)
T 2cnq_A 1 XSITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIA 80 (306)
T ss_dssp -CCCSCCCTTSSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBCCCC
T ss_pred CCCEEECCCCCCCCEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 96345326776740001577058971899699999488616464267889976899999999999986544666521257
Q ss_pred ----------------------CCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------7630000002546505788521224432200122102476513446632122235688
Q gi|254780493|r 80 ----------------------DPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLP 137 (323)
Q Consensus 80 ----------------------~~~~~~v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~ 137 (323)
++++|+|+||+|||||||||||+|||+|++|.+ .+.+||+.+|+++.++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkk~~~IPlEvIvR~~~~GS~~~ry~~-----~~~~~g~~l~~~l~e~~~l~ 155 (306)
T 2cnq_A 81 PGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEYVK-----TGTVHGLKQPQGLKESQEFP 155 (306)
T ss_dssp TTCCGGGGSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHHHHHHHHH-----HSEETTEECCTTCCTTCEEE
T ss_pred CCCCHHHCCCCCCCCCCHHHCCCCCEEEEEECCEEEEEEEEEEEEECCCEEECCC-----CCCCCCCCCCCCCCCCCCCC
T ss_conf 7521000122223462033214780158885325648999984230343321124-----57545866886634113789
Q ss_pred CCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCC-CCEEE
Q ss_conf 74022321033334577755554566653049989998999999999999999988679788742324455088-62576
Q gi|254780493|r 138 YPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKK-QNIIL 216 (323)
Q Consensus 138 ~Pi~tpstK~~~~~~~~D~~i~~~~~~~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~-g~iiL 216 (323)
+|+|||+||++.+ .||++++.+++ .++++.+++++|++.++++|+.++++|+++||+|||||||||++.+ ++|+|
T Consensus 156 ~pi~~p~tK~e~~--d~d~~~~~~~~--~~~~~~~~~~~i~~~~l~i~~~l~~~~~~~Gl~LvD~K~EFG~d~~g~~iil 231 (306)
T 2cnq_A 156 EPIFTPSTKAEQG--EHDENISPAQA--AELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIIL 231 (306)
T ss_dssp EEEECCBCCCC-----CCCBCCHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCCCCCC--CCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEE
T ss_conf 8654752213345--52011368999--9985368999999999999999999999779746501688657658980799
Q ss_pred ECCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2000481000000000001233125444432378887655311223679999989899999999999999986088664
Q gi|254780493|r 217 ADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFI 295 (323)
Q Consensus 217 ~DEv~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~~f~ 295 (323)
+||++||||||||++++|+. |..++|||||++|+||.+++|++.+ +|+||+|++..++++|+++||||||++|.
T Consensus 232 ~DeviTPDs~R~Wd~~~y~~----g~~~~~~DKq~~R~~l~~~~~~~~~-~p~lP~eii~~~~~~Y~~~~e~lTG~~f~ 305 (306)
T 2cnq_A 232 VDEVLTPDSSRFWNGASYKV----GESQDSYDKQFLRDWLTANKLNGVN-GVKMPQDIVDRTRAKYIEAYETLTGSKWS 305 (306)
T ss_dssp ESCCSCTTTEEEEETTTCCT----TSCCCCSSTHHHHHHHHHTTCTTCT-TCCCCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred EEEECCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 86511687542021533347----8874242549998889765777898-88899999999999999999998777678
No 2
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus}
Probab=100.00 E-value=0 Score=525.58 Aligned_cols=235 Identities=24% Similarity=0.369 Sum_probs=216.9
Q ss_pred CCC-CCCEEEECCEEEEEECCC-CCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHH-HCCCCEECCCCCCC
Q ss_conf 488-996023044026587599-9489998188125557657-7787889999999999998541-02331213577630
Q gi|254780493|r 8 YIP-ELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSD-ICSNHTLDYPDPNV 83 (323)
Q Consensus 8 ~~~-~l~liy~GKvk~vY~~~d-~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~-~i~tH~i~~~~~~~ 83 (323)
++| +.+++|+||||+||++++ +.++++|||||||||++++ .|||||++||+||+|||++|++ +|+||+++.+++++
T Consensus 2 ~~p~k~~lly~GKvrdvY~~~~~~~lli~~sDriSAfD~~~~~~IpgKG~~l~~iS~~~F~~l~~~gi~~h~i~~~~~~~ 81 (244)
T 2ywv_A 2 HMPTKQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTE 81 (244)
T ss_dssp -CCCEEEEEEECSSEEEEEESSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSSSE
T ss_pred CCCCCCCEEEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 99866625452267588985999999999979960407755788897769999999999874114553422003679801
Q ss_pred CEEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHH
Q ss_conf 00000254650578852122443220012210247651344663212223568874022321033334577755554566
Q gi|254780493|r 84 LVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEI 163 (323)
Q Consensus 84 ~~v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~~ 163 (323)
|+|+||+|||+|||||||+|||+|++| |+.+|++||.|++||+||++. .|||.++.+++
T Consensus 82 ~lvkk~~~iPiE~VvR~y~tGS~~~~~------------------g~~~g~~l~~pl~e~~~K~d~---~~dp~~~~~~~ 140 (244)
T 2ywv_A 82 QLVRRVTIIPLEVVVRNVVAGSLAKRI------------------GLEEGTPLEAPLVEFYYKNDD---LGDPLLLEDHI 140 (244)
T ss_dssp EEEECCEECSEEEEEEEEECHHHHHHH------------------TCCTTEEEEEEEEEEEECCGG---GTCCEECHHHH
T ss_pred EEEEECCCCCEEEEEEEEEECCCEECC------------------CCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHH
T ss_conf 788740345769999999805640016------------------887777889876554055511---35543322232
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCC
Q ss_conf 65304998999899999999999999998867978874232445508862576200048100000000000123312544
Q gi|254780493|r 164 IHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGIT 243 (323)
Q Consensus 164 ~~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~ 243 (323)
.+.++++.++++.+++.++++|..++++|+++||+|||||||||++.+|+|+|+||| ||||||||++++|
T Consensus 141 ~~~~~~~~~e~~~i~~~al~i~~~~~~~~~~~GiiLvDtK~EFG~~~dg~ivL~DEi-TPDssR~W~~~~~--------- 210 (244)
T 2ywv_A 141 FILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADGAILLADEI-SPDTCRLWDAKTN--------- 210 (244)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEECTTSCEEECSCC-STTTEEEEETTTC---------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEE-CCCCCCCCCCCCC---------
T ss_conf 210467877752499999999999999998779846888799747699939999950-8985545618987---------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 44323788876553112236799999898999999999999999860886
Q gi|254780493|r 244 PIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLK 293 (323)
Q Consensus 244 ~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~~ 293 (323)
+|||||++|+|+. .+.+.|.++++||+|+.
T Consensus 211 -~slDKq~~R~~l~-------------------~~~~~Y~ev~~rl~~~~ 240 (244)
T 2ywv_A 211 -EKLDKDVFRRDLG-------------------SLTDAYEVILQRLGGES 240 (244)
T ss_dssp -CBCSTHHHHTTCS-------------------CHHHHHHHHHHHTTCC-
T ss_pred -CCCCHHHHHHHHH-------------------HHHHHHHHHHHHHCCCC
T ss_conf -5458099874577-------------------78799999999836865
No 3
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A*
Probab=100.00 E-value=0 Score=512.11 Aligned_cols=237 Identities=29% Similarity=0.423 Sum_probs=217.6
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEECCCCCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHH-HHCCCCEECC
Q ss_conf 95300054889960230440265875999489998188125557657-778788999999999999854-1023312135
Q gi|254780493|r 1 MRILSKAYIPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTS-DICSNHTLDY 78 (323)
Q Consensus 1 m~~l~~~~~~~l~liy~GKvk~vY~~~d~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~-~~i~tH~i~~ 78 (323)
|+...+. +...+++|+||||+||+++++.+||+|||||||||++++ .|||||++||+||+|||++|+ .+++|||++.
T Consensus 1 ~~~~~~~-~~~~~~ly~GKvk~vy~~~~~~ll~~~~DriSafD~~~~~~ip~KG~~l~~is~~~F~~l~~~gi~th~i~~ 79 (242)
T 2z02_A 1 MEIKLEE-ILKKQPLYSGKAKSIYEIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEALEENGVKTHYIKY 79 (242)
T ss_dssp CCSCHHH-HTTSCCSEECSSEEEEECSSSEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCHHHH-HHCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9520775-641386501346368990899699999588351475257888977699999988775311335767531223
Q ss_pred CCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 77630000002546505788521224432200122102476513446632122235688740223210333345777555
Q gi|254780493|r 79 PDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPI 158 (323)
Q Consensus 79 ~~~~~~~v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i 158 (323)
+++++|+|++|+|||+|||||||+|||+|++|. +.++++||+|++||+||+++ .|||++
T Consensus 80 ~~~~~~~v~k~~~iPiE~IvR~y~tGS~~~ry~------------------~~eg~~l~~pi~e~~~K~d~---~~dp~i 138 (242)
T 2z02_A 80 IEPRYMIAKKVEIIPIEVIVRNIAAGSLCRRYP------------------FEEGKELPFPIVQFDYKNDE---YGDPML 138 (242)
T ss_dssp ETTTEEEEECEEECSEEEEEEEECCTHHHHHSS------------------CCTTCEEEEEEEEEEECCGG---GTCCBC
T ss_pred CCCCCHHHCCCCEECEEEEEEEEECCCCEEECC------------------CCCCCCCCCCCCCCCCCCCC---CCCCCC
T ss_conf 587133240264217699999865245312201------------------46777889875565444422---476545
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHH
Q ss_conf 54566653049989998999999999999999988679788742324455088625762000481000000000001233
Q gi|254780493|r 159 SPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSF 238 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~ 238 (323)
+++++.+.|+++++++++++++|+++|+.++++|+++||+|||||||||++.+|+|+|+||| ||||||||++++|
T Consensus 139 ~~~~~~~~g~~~~~e~~~i~e~a~~l~~~~~~~~~~~GliLvD~K~EFG~~~~g~iil~DEI-TPDssR~W~~~~~---- 213 (242)
T 2z02_A 139 NEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDREGNLLVADEI-SPDTMRLWDKETR---- 213 (242)
T ss_dssp CHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEEETTCCEEECSCC-STTTEEEEETTTC----
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEC-CCCCCCCCCCCCC----
T ss_conf 78899996007788999999999999999999999789879998799757699979999810-7975355438876----
Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 125444432378887655311223679999989899999999999999986
Q gi|254780493|r 239 REGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKI 289 (323)
Q Consensus 239 ~~g~~~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~l 289 (323)
+++|||++|+||. .+.+.|.++.+||
T Consensus 214 ------e~lDK~~~R~~l~-------------------~v~~~Y~ev~~rl 239 (242)
T 2z02_A 214 ------DVLDKDVFRKDLG-------------------DVIAKYRIVAERL 239 (242)
T ss_dssp ------CBCSTHHHHTTCS-------------------CHHHHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHH-------------------HHHHHHHHHHHHH
T ss_conf ------5357588775478-------------------7999999999986
No 4
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str}
Probab=100.00 E-value=0 Score=497.85 Aligned_cols=234 Identities=26% Similarity=0.371 Sum_probs=209.6
Q ss_pred CCCCCCEEEECCEEEEEECCC-CCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH-CCCCEECCCCCCCC
Q ss_conf 488996023044026587599-9489998188125557657-77878899999999999985410-23312135776300
Q gi|254780493|r 8 YIPELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDPNVL 84 (323)
Q Consensus 8 ~~~~l~liy~GKvk~vY~~~d-~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~-i~tH~i~~~~~~~~ 84 (323)
.++..+++|+||||+||+++| +.++|+|||||||||++++ .|||||++||+||+|||++|+++ ++||+++.+++++|
T Consensus 21 ~m~~~~~ly~GKvK~iY~~~d~~~ll~~~~DriSafD~~~~~~IpgKG~~l~~iS~~wF~~l~~~gi~th~i~~~~~r~m 100 (263)
T 3kre_A 21 SMENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKKLIDKGIKTHFISLLNQREQ 100 (263)
T ss_dssp -----CEEEECSSEEEEECSSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSSSEE
T ss_pred CCCCCCEEEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 67545555631687888759999999999888534376257889988999999999999998755766432013688479
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 00002546505788521224432200122102476513446632122235688740223210333345777555545666
Q gi|254780493|r 85 VGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEII 164 (323)
Q Consensus 85 ~v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~~~ 164 (323)
+|+||+|||+|||||||+|||+|++|. .+ ++..++.|+++++.|.+. .+||.++.+++.
T Consensus 101 lvkk~~~iPiE~VvR~y~~GS~~~~Y~----~~--------------~~~~~~~~l~~~~~k~~~---~~Dp~i~~~~~~ 159 (263)
T 3kre_A 101 LVKKITIIPIEVVIRNLAAGNFSKRFQ----IA--------------DGTPFKSPIIEFYYKNDE---LSDPMVSEGHIL 159 (263)
T ss_dssp EEECEEECSEEEEEEEECCHHHHHHHT----CC--------------TTCEEEEEEEEEEECCTT---TTCCEECHHHHH
T ss_pred EEEECCCCCEEEEEEEEECHHHHHHCC----CC--------------CCCCCCCCCCCCCCCCCC---CCCCCCCHHHHH
T ss_conf 998125785699994137031120112----56--------------675547788853124544---577874677788
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEC---CCCCEEEECCCCCCCCCHHHCCCHHHHHHHCC
Q ss_conf 530499899989999999999999999886797887423244550---88625762000481000000000001233125
Q gi|254780493|r 165 HRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGID---KKQNIILADEIHTPDSSRYWEVETYEKSFREG 241 (323)
Q Consensus 165 ~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~---~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g 241 (323)
++++++.++++.+++.++++|..++++|+++||+|||||||||++ .+|+|+|+||| ||||||||++++|+
T Consensus 160 ~~~~~~~~e~~~i~~~sl~i~~~~~~~~~~~GliLvDtK~EFG~~~~~~~g~ivLiDEI-TPDssR~Wd~~~~e------ 232 (263)
T 3kre_A 160 SFQWLTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGKLHNDEQSDLFLADEI-SPDTCRLWDISTNK------ 232 (263)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEECEEEETTCTTCCCEECSCC-STTTEEEEETTTCC------
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEEE-CCCCCEEEECCCCC------
T ss_conf 74201077888899999999999999999659689997789886236888849999976-79863000689876------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 444432378887655311223679999989899999999999999986088
Q gi|254780493|r 242 ITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGL 292 (323)
Q Consensus 242 ~~~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~ 292 (323)
+||||++|+|+. ++.+.|.++++||+..
T Consensus 233 ----~lDKq~~R~~l~-------------------~v~~~Y~ei~~rl~~~ 260 (263)
T 3kre_A 233 ----RLDKDRYRLNLG-------------------NVIEGYREVAHKLNAI 260 (263)
T ss_dssp ----BCSTHHHHTTCS-------------------CHHHHHHHHHHHHTCS
T ss_pred ----CCCHHHHHHHHH-------------------HHHHHHHHHHHHHCCC
T ss_conf ----567488752246-------------------6889999999986106
No 5
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=100.00 E-value=0 Score=497.74 Aligned_cols=222 Identities=27% Similarity=0.317 Sum_probs=204.3
Q ss_pred EEEECCEEEEEECCCCCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH-CCCCEECCCCCCCCEEEECCC
Q ss_conf 0230440265875999489998188125557657-77878899999999999985410-233121357763000000254
Q gi|254780493|r 14 NYYSGKVRENYFLSDGTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDPNVLVGQQLQM 91 (323)
Q Consensus 14 liy~GKvk~vY~~~d~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~-i~tH~i~~~~~~~~~v~k~~~ 91 (323)
+.|+||||+||.++| .+||+|||||||||++++ .|||||++||+||+|||++|++. |+|||++.+++++|+|++|+|
T Consensus 1 ~~y~GKvk~vy~~~d-~~l~~~~DriSafD~~~~~~IpgKG~~l~~is~~~F~~L~~~gI~tH~i~~~~~~~~~v~k~~~ 79 (230)
T 1kut_A 1 MNYEGKTKIVKVTGD-YALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYIPPRTLKVIPLKM 79 (230)
T ss_dssp ------CEEEEEETT-EEEEEECCC-----------CCSHHHHHHHHHHHHHHHHHHTTCCBSEEEEETTTEEEECCCEE
T ss_pred CCCCCCEEEEEECCC-EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEECCC
T ss_conf 942231258884699-6999997872331752688999741999999999999886568765310047760777887257
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCH
Q ss_conf 65057885212244322001221024765134466321222356887402232103333457775555456665304998
Q gi|254780493|r 92 FPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTR 171 (323)
Q Consensus 92 iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~~~~~~~~~~ 171 (323)
||||||||||+|||+|++|+ ..++.+||+|+++|++|+++ .|||+|+.+++..+++++.
T Consensus 80 iPiE~VvR~y~tGS~~~~y~------------------~~~g~~~~~pi~e~~~k~~~---~~D~~i~~~~~~~~~~~~~ 138 (230)
T 1kut_A 80 FPLEVVVRLKKAGSFVRRYG------------------GAEGEDLPVPLVEFFIKDDE---RHDPMVCVDHLEILGIATK 138 (230)
T ss_dssp CSEEEEEEEECCHHHHHHHC------------------CCTTCEEEEEEEEEEECCGG---GTCCBCCHHHHHHTTSCCH
T ss_pred CCEEEEEEEEECCHHHHHCC------------------CCCCCCCCCCCCCCHHCCCC---CCCCCCCHHHHHHHHCCCH
T ss_conf 77799999226234465336------------------65465279986640002333---5784401578888610359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf 99989999999999999999886797887423244550886257620004810000000000012331254444323788
Q gi|254780493|r 172 NQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDF 251 (323)
Q Consensus 172 ~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~ 251 (323)
++++.++++|+++|..++++|+++||+|||||||||++.+|+|+|+||| ||||||||+. +++||||+
T Consensus 139 ~~~~~i~~~al~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~ivL~DEI-TPDssR~w~~------------~~~~DKq~ 205 (230)
T 1kut_A 139 KQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDGNVVLGDEI-SPDTFRLRKK------------GEIFDKDV 205 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECEEECTTCCEEECSCC-STTTEEEEET------------TCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEEE-CCCCCCCCCC------------CCCCCHHH
T ss_conf 9998789999999999999874059389886189757599969999965-7973363689------------86437799
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87655311223679999989899999999999999986
Q gi|254780493|r 252 IRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKI 289 (323)
Q Consensus 252 ~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~l 289 (323)
+|+|+. .+.+.|.++++++
T Consensus 206 ~R~~l~-------------------~v~~~Y~ev~~~~ 224 (230)
T 1kut_A 206 YRRDLG-------------------DPLKKYREVLELC 224 (230)
T ss_dssp HHHGGG-------------------CTTHHHHHHHHHH
T ss_pred HHHCCH-------------------HHHHHHHHHHHHH
T ss_conf 872102-------------------3679999999999
No 6
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase; HET: ADP AMP CIT; 1.40A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=0 Score=490.86 Aligned_cols=233 Identities=25% Similarity=0.339 Sum_probs=215.3
Q ss_pred CCCCCCCCEEEECCEEEEEECCC-CCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHH-HHCCCCEECCCCCC
Q ss_conf 05488996023044026587599-9489998188125557657-778788999999999999854-10233121357763
Q gi|254780493|r 6 KAYIPELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTS-DICSNHTLDYPDPN 82 (323)
Q Consensus 6 ~~~~~~l~liy~GKvk~vY~~~d-~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~-~~i~tH~i~~~~~~ 82 (323)
+..+.+++++|+||||+||++++ +.++|++|||+||||++++ .|||||++||+||+|||++|+ .+++|||++..+++
T Consensus 2 ~~~~~~~~lly~GKvkdvY~~~~~~~lli~~tDriSafD~~~~~~Ip~KG~il~~~s~~~F~~l~~~gi~th~i~~~~~~ 81 (238)
T 3nua_A 2 NAMVNQLEMLYEGKAKKIYATDKEDMVIVHYKDDATAFNGEKKAQIESKGVLNNEITSLIFEMLNKEGIKTHFVEKLNDR 81 (238)
T ss_dssp -CCCCEEEEEEECSSEEEEEESSTTEEEEEECSEEEETTTTEEEECTTHHHHHHHHHHHHHHHHHHTTCCBSEEEECSSS
T ss_pred HHHHHCCCCEEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 20333063026313648998399999999997986563643478899778999999999998744467554310126996
Q ss_pred CCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 00000025465057885212244322001221024765134466321222356887402232103333457775555456
Q gi|254780493|r 83 VLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNE 162 (323)
Q Consensus 83 ~~~v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~ 162 (323)
+|+|+||+|||+|||||||+|||+|++| |+.++++|++|+++|++|.+. .|||+++.++
T Consensus 82 ~~lvkk~~~iPiE~IvR~y~~GS~~~~y------------------g~~~~~~~~~~~~~~~~k~~~---~~d~~~~~~~ 140 (238)
T 3nua_A 82 DQLCKKVEIVPLEVIVRNVAAGSMAKRL------------------GLEEGYELKTTVFELSYKDDS---LGDPLINDYH 140 (238)
T ss_dssp EEEEECCEECSEEEEEEEEECHHHHHHH------------------TCCTTEEEEEEEEEEEECCGG---GTCCEECHHH
T ss_pred EEEEEECCCCCEEEEEEEEECCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHH
T ss_conf 5998423511679999999835540215------------------866565479876533223456---6786657899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCC
Q ss_conf 66530499899989999999999999999886797887423244550886257620004810000000000012331254
Q gi|254780493|r 163 IIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGI 242 (323)
Q Consensus 163 ~~~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~ 242 (323)
+.+.++++.++++.+++.++++|+.++++++++||+|||||||||++ +|+|||+||| ||||||||++++|+
T Consensus 141 ~~~~~~~~~~e~~~i~~~~~~v~~~~~~~~~~~GliLvD~K~EFG~~-~g~lvL~DEi-TPDssR~W~~~~~e------- 211 (238)
T 3nua_A 141 AVGIGATTFEELNKIYEITAKVNEILKEAFKKQNINLIDFKLEFGRY-NGEILLADEI-SPDTCRFWDATTGE------- 211 (238)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEE-TTEEEEESCC-STTTEEEEETTTCC-------
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC-CCEEEEEEEE-CCCCCCCCCCCCCC-------
T ss_conf 99866411555767999999999999999987898899887893254-9959999863-69733122388876-------
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 444323788876553112236799999898999999999999999860
Q gi|254780493|r 243 TPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKIT 290 (323)
Q Consensus 243 ~~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lT 290 (323)
++|||++|+|+. ++.+.|.++++||.
T Consensus 212 ---~~DK~~~R~~l~-------------------~v~~~Y~ev~~rl~ 237 (238)
T 3nua_A 212 ---KMDKDRFRRDMG-------------------NVINGYREVLNRLR 237 (238)
T ss_dssp ---BCSTHHHHTTCS-------------------CHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHH-------------------HHHHHHHHHHHHHH
T ss_conf ---457599876665-------------------36099999999851
No 7
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A*
Probab=100.00 E-value=0 Score=488.54 Aligned_cols=233 Identities=24% Similarity=0.335 Sum_probs=212.6
Q ss_pred CCCCCEEEECCEEEEEECCC-CCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH-CCCCEECCCCCCCCE
Q ss_conf 88996023044026587599-9489998188125557657-77878899999999999985410-233121357763000
Q gi|254780493|r 9 IPELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDPNVLV 85 (323)
Q Consensus 9 ~~~l~liy~GKvk~vY~~~d-~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~-i~tH~i~~~~~~~~~ 85 (323)
+....++|+||||+||+++| +.++|++||||||||++++ .||+||++||++|+|||++|+++ ++||+++.+++++|+
T Consensus 1 m~~~~~ly~GKvrdvY~~~d~~~l~~~~~DriSafD~~~~~~Ip~KG~~l~~~s~~~F~~l~~~gi~th~~~~~~~~~m~ 80 (237)
T 2gqr_A 1 MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECL 80 (237)
T ss_dssp CCCCEEEEECSSEEEEECSSTTEEEEEECSEECCTTTTCCEECTTHHHHHHHHHHHHHHHHHHTTCCBCEEEECSSSEEE
T ss_pred CCCCCCCEECCCEEEEECCCCCEEEEEEECCCCCCCCEECCCCCCCHHHHCHHHHHHHHHHCCCCCCCCHHCCCCCCEEE
T ss_conf 98656421025648888799999999983884042754147878521876653452245550367420011158870688
Q ss_pred EEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 00025465057885212244322001221024765134466321222356887402232103333457775555456665
Q gi|254780493|r 86 GQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIH 165 (323)
Q Consensus 86 v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~~~~ 165 (323)
|+||+|||+|||||||+|||+|++| |+.++++|++|+++|++|++. .|||+++.+++.+
T Consensus 81 vkk~~~ipiE~IVR~y~~GS~~~~y------------------g~~~~~~~~~p~~~~~~k~~~---~~d~~~~~~~~~~ 139 (237)
T 2gqr_A 81 VKKLDMVPVECVVRNRAAGSLVKRL------------------GIEEGIELNPPLFDLFLKNDA---MHDPMVNESYCET 139 (237)
T ss_dssp EECCEECSEEEEEEEECCHHHHHHH------------------CCCTTCEEEEEEEEEEECCGG---GTCCEECHHHHHH
T ss_pred EEEECCCCEEEEEEEEECCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHH
T ss_conf 8750111069999988626764255------------------866575568886443223445---6898778889998
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCC
Q ss_conf 30499899989999999999999999886797887423244550886257620004810000000000012331254444
Q gi|254780493|r 166 RGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPI 245 (323)
Q Consensus 166 ~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~~~ 245 (323)
+++++.++++.+++.++++|+.++++++++||+|||||||||++. ++++|+||+ ||||||||++++|+
T Consensus 140 ~~~~~~e~~~~i~~~~~~l~~~~~~~~~~~GliLvDtK~EFG~~~-~~iiL~Dei-TPDSsR~W~~~~~e---------- 207 (237)
T 2gqr_A 140 FGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFGLYK-GEVVLGDEF-SPDGSRLWDKETLE---------- 207 (237)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEET-TEEEEESCC-STTSEEEEETTTCC----------
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC-CCEEEEEEE-CCCCCCCCCCCCCC----------
T ss_conf 473103457889988989999999999878987999989987628-989999876-79875221477677----------
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3237888765531122367999998989999999999999998608866
Q gi|254780493|r 246 GLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKF 294 (323)
Q Consensus 246 s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~~f 294 (323)
+||||++|+||. .+.+.|.++++|| |-.+
T Consensus 208 ~~DKq~~R~~l~-------------------~~~~~Y~~v~~r~-~~~~ 236 (237)
T 2gqr_A 208 KMDKDRFRQSLG-------------------GLIEAYEAVARRL-GVQL 236 (237)
T ss_dssp BCSTHHHHTTCC-------------------CHHHHHHHHHHHH-TCCC
T ss_pred CCCHHHHHHHHH-------------------HHHHHHHHHHHHH-CCCC
T ss_conf 458799876566-------------------6779999999985-8888
No 8
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=0 Score=483.35 Aligned_cols=259 Identities=23% Similarity=0.295 Sum_probs=214.0
Q ss_pred CEEEECCEEEEEECCC--CCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH-CCCCEECCCCCCCCEEEE
Q ss_conf 6023044026587599--9489998188125557657-77878899999999999985410-233121357763000000
Q gi|254780493|r 13 PNYYSGKVRENYFLSD--GTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDPNVLVGQQ 88 (323)
Q Consensus 13 ~liy~GKvk~vY~~~d--~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~-i~tH~i~~~~~~~~~v~k 88 (323)
+++|+||||+||+++| +.++|+||||+||||++++ .|||||++||+||+|||++|++. |+|||++.+++++|+|+|
T Consensus 11 k~lyeGKvK~vY~~~d~~~~ll~~fkDriSAfD~~~~~~I~gKG~~l~~iS~~~Fe~L~~~GI~TH~i~~~~~~~~lvkk 90 (425)
T 2h31_A 11 KKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQEAGIKTAFTRKCGETAFIAPQ 90 (425)
T ss_dssp CCCCBCSSCEEECCTTSCSSCEEEEC---------------CCHHHHHHHHHHHHHHHHHHTCCBSCCEECSSSEEEECC
T ss_pred CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEE
T ss_conf 95320467378624899988999997997451763789999889999999999999873279987351368997278874
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 2546505788521224432200122102476513446632122235688740223210333345777555545666530-
Q gi|254780493|r 89 LQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRG- 167 (323)
Q Consensus 89 ~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~~~~~~- 167 (323)
|+|||+|||||||+|||++++| .|+.+|.+|++|++++++|++. .|||.++.++++..+
T Consensus 91 ~~miPlE~VvR~yatGS~~kr~-----------------~g~~eG~~l~~pl~e~~~K~d~---~~dP~i~~e~~~~~~~ 150 (425)
T 2h31_A 91 CEMIPIEWVCRRIATGSFLKRN-----------------PGVKEGYKFYPPKVELFFKDDA---NNDPQWSEEQLIAAKF 150 (425)
T ss_dssp EEECSCEEEEESBCCHHHHHHS-----------------TTCCTTCBCSSCCEEEESCCCS---SCCCCBCHHHHHTTTC
T ss_pred CCCCCEEEEEECCEEEHHHCCC-----------------CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHH
T ss_conf 2567807999551531010256-----------------8872686089864333457766---7895401345665688
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC-CCCEEEECCCCCCCCCHHHCCCHHHHHHHCC
Q ss_conf -----4998999899999999999999998867978874232445508-8625762000481000000000001233125
Q gi|254780493|r 168 -----ILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK-KQNIILADEIHTPDSSRYWEVETYEKSFREG 241 (323)
Q Consensus 168 -----~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~-~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g 241 (323)
++++++++.|++.++++|+.++++|+++||+|||||||||++. ++.|+|+||+ ||||||||+..+
T Consensus 151 ~~~~~ii~~~e~e~i~~~a~~v~~~l~~~~~~~Gl~LvD~K~EFG~d~~~~~Ill~Dei-TPDs~RlWd~~~-------- 221 (425)
T 2h31_A 151 CFAGLLIGQTEVDIMSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTTKEIVLADVI-DNDSWRLWPSGD-------- 221 (425)
T ss_dssp EETTEECCHHHHHHHHHHHHHHHHHHHHHHGGGSCEEEEEEECEEEETTTCCEEECSCC-CTTSEEEECCC---------
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECC-CCCCCCCCCCCC--------
T ss_conf 98745278789999999999999999999997898799878997551799969998745-897531655998--------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-----------CCCCCCHHHHHHHH
Q ss_conf 4444323788876553112236799999898999999999999999860886647-----------88678999999999
Q gi|254780493|r 242 ITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIA-----------DNSELPPLERIRNN 310 (323)
Q Consensus 242 ~~~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~~f~~-----------~~~~~~~~erI~~~ 310 (323)
.+.++|||++|||-.- .++....+.+.|.++++|+- .-+.+ ...-.++.+.+...
T Consensus 222 -~~~~~DKq~~Rd~~~v------------~~~~l~~v~~~Y~~v~~rl~-~~lksk~~~~V~Ii~GS~SD~~~~~~~~~~ 287 (425)
T 2h31_A 222 -RSQQKDKQSYRDLKEV------------TPEGLQMVKKNFEWVAERVE-LLLKSESQCRVVVLMGSTSDLGHCEKIKKA 287 (425)
T ss_dssp ------------------------------CCSSSCCCCCHHHHHTTGG-GGGSCSCCCEEEEEESCGGGHHHHHHHHHH
T ss_pred -CCCCCCHHHHCCCCCC------------CHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf -7633460654254000------------27788799999999999865-310246676358871465079999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780493|r 311 LRKY 314 (323)
Q Consensus 311 l~~~ 314 (323)
|..|
T Consensus 288 l~~~ 291 (425)
T 2h31_A 288 CGNF 291 (425)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 9982
No 9
>3o96_A RAC-alpha serine/threonine-protein kinase; pleckstrin homology, allosteric inhibitor, transferase; HET: IQO; 2.70A {Homo sapiens}
Probab=27.76 E-value=26 Score=14.13 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=53.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE-ECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCC
Q ss_conf 5304998999899999999999999998867978874232445-508862576200048100000000000123312544
Q gi|254780493|r 165 HRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFG-IDKKQNIILADEIHTPDSSRYWEVETYEKSFREGIT 243 (323)
Q Consensus 165 ~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG-~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~ 243 (323)
..+.+...+ ++.....+...+.-+-.+.||++-|.|-|== ++.+|.+.|+|= |. ++.-.... .........
T Consensus 244 ~~~~~~e~~---~~~i~~qi~~aL~yLH~~~~IiHrDlKPeNILi~~~g~iKL~DF-G~---a~~~~~~~-~~~~~~~gT 315 (446)
T 3o96_A 244 RERVFSEDR---ARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDF-GL---CKEGIKDG-ATMKTFCGT 315 (446)
T ss_dssp HHSSCCHHH---HHHHHHHHHHHHHHHHHTSCCCCCCCCGGGEEECTTSCEEECCC-CS---SCC---------------
T ss_pred CCCCCCHHH---HHHHHHHHHHHHHHHHHCCCEECCCCCHHHCCCCCCCCEEEEEC-CE---EEECCCCC-CCCCCCCCC
T ss_conf 258999999---99999999999887773298883557666603079998898004-31---45416787-634556778
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 443237888765531122367999998989999999999999998608866478
Q gi|254780493|r 244 PIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIAD 297 (323)
Q Consensus 244 ~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~~f~~~ 297 (323)
+..+-++.++.. .+ +-..++-..=+-+||.+||...+..
T Consensus 316 ~~Y~APE~~~~~----~y-----------~~~~DiwSlGvilyemltG~~Pf~~ 354 (446)
T 3o96_A 316 PEYLAPEVLEDN----DY-----------GRAVDWWGLGVVMYEMMCGRLPFYN 354 (446)
T ss_dssp CCSSCHHHHTTC----CC-----------CTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCCCHHHHCCC----CC-----------CHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 131748786489----98-----------8567552487999999878899899
No 10
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=22.36 E-value=33 Score=13.49 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 2378887655311223679999989899999
Q gi|254780493|r 247 LDKDFIRNWILTRCNPYRDNIPDIPENIILR 277 (323)
Q Consensus 247 ~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~ 277 (323)
-+-.-+|.|..+++++=.+-. -+|.+|++.
T Consensus 13 ~~~~~IR~WAr~~G~~Vs~RG-RIp~~V~eA 42 (55)
T 2kng_A 13 EQSAAIREWARRNGHNVSTRG-RIPADVIDA 42 (55)
T ss_dssp THHHHHHHHHHHTTCCCCSSS-CCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCC-CCCHHHHHH
T ss_conf 537999999999388378789-888999999
Done!