RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] (323 letters) >gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 313 Score = 525 bits (1356), Expect = e-150 Identities = 172/317 (54%), Positives = 220/317 (69%), Gaps = 7/317 (2%) Query: 1 MRILSKAYIPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQIT 60 R L++ PELPN Y GKVR+NY L DG R+ +ATDR+SAFD+ + IPYKG+VLNQ Sbjct: 4 PRTLTEFNFPELPNVYRGKVRDNYDLPDGRRVMVATDRISAFDRVLPAIPYKGQVLNQTA 63 Query: 61 QYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRK 120 +WF T DIC NH L PDPNV+VG++ + FP+E++VRGYLAG+T YK GKR+ Sbjct: 64 AFWFEATKDICPNHVLAVPDPNVVVGKRCEPFPVEMVVRGYLAGST----WRLYKAGKRE 119 Query: 121 IYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSY 180 +Y LPD + +NQKLP P+ITPTTK+ E G D+PISP EI+ +G+LT W+ +S Y Sbjct: 120 MYGVTLPDGLRENQKLPEPIITPTTKAEEG--GHDEPISPEEILAQGLLTPEDWDELSKY 177 Query: 181 ALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFRE 240 AL+LF RG ++A E GLILVD+KYEFG D I+L DEIHTPDSSRYW + YE+ F Sbjct: 178 ALALFARGQEMAAERGLILVDTKYEFGKDADGRIVLIDEIHTPDSSRYWYADGYEERFAA 237 Query: 241 GITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSE 300 G LDK+F+R W++ RC PY IP+IP+ +I+ S+ YI YEKITG F+ D+ Sbjct: 238 GEPQEQLDKEFVRQWLIERCGPYGQEIPEIPDEVIVSVSERYIELYEKITGETFVPDSGS 297 Query: 301 LPPLERIRNNLRKYTHR 317 PPL RIR NL Y R Sbjct: 298 -PPLARIRKNLAAYLAR 313 >gnl|CDD|178159 PLN02544, PLN02544, phosphoribosylaminoimidazole-succinocarboxamide synthase. Length = 370 Score = 331 bits (851), Expect = 1e-91 Identities = 138/304 (45%), Positives = 196/304 (64%), Gaps = 6/304 (1%) Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQITQYWFHHTS 68 +P L + GKVR+ Y L D + + TDR SAFD+ +A IP+KG+VLNQ + +WF++T Sbjct: 72 VPGLGSRRRGKVRDIYDLGD-YLVLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTK 130 Query: 69 DICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPD 128 I N + PDPNV + ++ +FP+E +VRGY+ G+T TSL T Y G R LPD Sbjct: 131 HITPNALVSSPDPNVTIAKKCSVFPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPD 190 Query: 129 NMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERG 188 M NQKLP ++TPTTK+++ D PISP EI+ G++T+ ++ +SS AL+LF G Sbjct: 191 GMVKNQKLPANILTPTTKAADH----DVPISPEEIVEEGLMTQEDFDEVSSKALALFAFG 246 Query: 189 CKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLD 248 ++A E+GLILVD+KYEFG D I+L DE+HTPDSSRYW ++YE+ G+ P +D Sbjct: 247 QEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYWLADSYEERHAAGLEPENID 306 Query: 249 KDFIRNWILTRCNPYRDN-IPDIPENIILRTSQTYIAAYEKITGLKFIADNSELPPLERI 307 K+F+R W C+PY+D +P+ P ++ S YI YE ITG KF +++ P ERI Sbjct: 307 KEFLRLWFKENCDPYKDEVLPEAPAELVCELSWRYIKLYETITGEKFEVPDTQEPIHERI 366 Query: 308 RNNL 311 N+ Sbjct: 367 SRNV 370 >gnl|CDD|184421 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 296 Score = 233 bits (598), Expect = 4e-62 Identities = 95/304 (31%), Positives = 150/304 (49%), Gaps = 35/304 (11%) Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIAC-IPYKGEVLNQITQYWFHHT 67 +P LP GKVR+ Y + D + +ATDR+SAFD + IP KG VL Q++ +WF Sbjct: 9 LPSLPLLGRGKVRDIYAVDDDRLLMVATDRISAFDVILPEPIPDKGRVLTQMSNFWFDKL 68 Query: 68 SDICSNHTLDYPDPNV-------------LVGQQLQMFPIELIVRGYLAGNTKTSLLTFY 114 + I NH +V +V ++L+ P+E +VRGYL G S Y Sbjct: 69 AHIVPNHLTGIDVDDVVPADEADQVLGRAVVVKKLKPLPVECVVRGYLTG----SGWKDY 124 Query: 115 KNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGC-DQPISPNEIIHRGILTRNQ 173 + + LP + + KLP P+ TP TK+ G D+ IS E++ ++ Sbjct: 125 QA-TGTVCGIKLPAGLVEASKLPEPIFTPATKA---ELGDHDENISFEEVVE--LVGAEL 178 Query: 174 WETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVET 233 + L++++ A G+I+ D+K+EFG+D+ + L DE+ TPDSSR+W ++ Sbjct: 179 AAQLRDATLAIYKEAADYAATRGIIIADTKFEFGLDEDGTLTLMDEVLTPDSSRFWPADS 238 Query: 234 YEKSFREGITPIGLDKDFIRNWILTRCNPYRDNI---PDIPENIILRTSQTYIAAYEKIT 290 Y+ G + DK F+R+W L D P +P ++I +T Y A E++T Sbjct: 239 YQ----PGTSQPSFDKQFVRDW-LETSGW--DKTAPAPPLPADVIEKTRAKYREALERLT 291 Query: 291 GLKF 294 G Sbjct: 292 GKSL 295 >gnl|CDD|161698 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide synthase. Check length. Longer versions may be multifunctional enzymes. Length = 237 Score = 138 bits (349), Expect = 2e-33 Identities = 80/286 (27%), Positives = 123/286 (43%), Gaps = 54/286 (18%) Query: 9 IPELPNYYSGKVRENYFLSDGTRI-TIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHH 66 I + YSGK ++ Y D + + D +SAFD + IP KG + +I+ + F Sbjct: 3 IKKRQKLYSGKAKDIYETDDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEK 62 Query: 67 TSDICS-NHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYL 125 + H +D + ++ ++L + P+E+IVR AG SLL Sbjct: 63 LEEAGIPTHYIDLIEDREMLVKKLDIIPLEVIVRNIAAG----SLLKRLG---------- 108 Query: 126 LPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLF 185 + + +L P++ K E D ++ + G+ T + E I AL + Sbjct: 109 ----IPEGLELEQPLVEFIFKPDEVG---DPMLNESYAEALGLATEEELERIKELALKVN 161 Query: 186 ERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPI 245 E K E G+ILVD K EFG+D++ N+ILADE+ +PD+ R W+ ETYE + Sbjct: 162 EVLKKYFDEKGIILVDFKLEFGLDEEGNLILADEV-SPDTCRLWDKETYEVGAPK----- 215 Query: 246 GLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITG 291 LDKD R RT I AYE + Sbjct: 216 -LDKDIFR-----------------------RTLGKLIEAYETVAR 237 >gnl|CDD|131782 TIGR02735, purC_vibrio, phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type. Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence and gap pattern from a form (see TIGR00081) shared by a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukarote Guillardia theta. Length = 365 Score = 120 bits (303), Expect = 4e-28 Identities = 102/331 (30%), Positives = 153/331 (46%), Gaps = 66/331 (19%) Query: 16 YSGKVRENYFLS--DGTR----------------ITIATDRLSAFDQNIACI-------- 49 +SGKVR Y+L+ D R I + +DR+SAFD CI Sbjct: 22 HSGKVRSVYWLTEEDSRRLIEEKGYPVAHDAPLAIMVISDRISAFD----CIWHAEGGLN 77 Query: 50 --PYKGEVLNQITQYWFH--HTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGN 105 P KG LN I+ +WF + + +H LD P P V + Q+ + IE I R Y+ G Sbjct: 78 GVPGKGAALNAISNHWFKLFAEAGLAESHILDIPHPFVWIVQKAKPVKIEAICRQYITG- 136 Query: 106 TKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSS-ESASGC----DQPISP 160 S+ Y G+R LP+ ++ +Q+LP +ITP+TK E G D I+ Sbjct: 137 ---SMWRAYAKGERVFCGIDLPEGLAKDQRLPELLITPSTKGILEGIPGVPAIDDVNITR 193 Query: 161 NEI-IHRGILTRNQWETISSYALSLFERGCKL---ALEN-GLILVDSKYEFG----IDKK 211 +I + Q E I Y L G + L G + VD+K+EFG ++ Sbjct: 194 ADIERNWSAFNFEQPEDIDHYE-RLLREGFAVISDRLSKLGQLFVDTKFEFGYVTDVEGT 252 Query: 212 QNIILADEIHTPDSSRYWE---------VETYEKSFREGITPIGLDKDFIRN--WILTRC 260 + +I DE+ TPDSSR W+ VE ++ FR+ + D D + N ++ R Sbjct: 253 RKLIYMDEVGTPDSSRIWDAGAYAQGKIVENSKEGFRQALLNWFPDPDILLNKDRMVERA 312 Query: 261 NPYRDNIPDIPENIILRTSQTYIAAYEKITG 291 RDN +P+ +++ S+TY+ EKITG Sbjct: 313 ALARDNA--LPQEMLMDVSETYLGIAEKITG 341 >gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 367 Score = 117 bits (296), Expect = 3e-27 Identities = 103/336 (30%), Positives = 149/336 (44%), Gaps = 61/336 (18%) Query: 16 YSGKVRENYFL--SDGTR----------------ITIATDRLSAFD------QNIACIPY 51 +SGKVR Y+L D R I + +DR+SAFD + +P Sbjct: 23 HSGKVRSVYWLTEEDSRRLIKEKGYNVPADAPLAIMVISDRISAFDCIWHGEGGLNGVPG 82 Query: 52 KGEVLNQITQYWFHHTSD--ICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTS 109 KG LN I+ +WF + + +H LD P P V + Q+ + IE I R Y+ G S Sbjct: 83 KGAALNAISNHWFKLFKENGLADSHILDIPHPFVWIVQKARPVMIEAICRQYITG----S 138 Query: 110 LLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSS-ESASGCDQPISPNEIIHRGI 168 + Y G+R+ LP+ + +QKLP +ITP+TK G + N I R Sbjct: 139 MWRAYSKGEREFCGITLPEGLEKDQKLPELLITPSTKGILTGIPGVPEADDVN--ISRSD 196 Query: 169 LTRN----QWETISSYAL--SLFERGCKL---ALEN-GLILVDSKYEFG----IDKKQNI 214 + N + + L L + G K+ AL I VD+K+EFG + + Sbjct: 197 IEANYQAFNFSSADDIDLYEKLLKEGFKVISDALAKLDQIFVDTKFEFGYVTDAAGNEKL 256 Query: 215 ILADEIHTPDSSRYWEVETY------EKS---FREGITPIGLDKDFIRN--WILTRCNPY 263 I DE+ TPDSSR W+ Y E S FR+ + D D + N + R Sbjct: 257 IYMDEVGTPDSSRIWDGAAYRDGKIVENSKEGFRQFLLNHFPDPDILLNKDRMPEREALA 316 Query: 264 RDNIPDIPENIILRTSQTYIAAYEKITGLKF-IADN 298 RDN +P ++ S+TY EKITG K ++ N Sbjct: 317 RDN--ALPLEAMMDVSRTYTGIAEKITGAKIVLSAN 350 >gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed. Length = 238 Score = 99.8 bits (250), Expect = 8e-22 Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 37/243 (15%) Query: 16 YSGKVRENYFLSD-GTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSDI-CS 72 Y GK + Y D I D +AF+ + I KG + NQI+ + F + Sbjct: 8 YEGKAKIVYSTDDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKKLEEAGIP 67 Query: 73 NHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSD 132 H ++ + +++++ P+E++VR AG SL+ KR L + + Sbjct: 68 THFIEKLSDREQLVKKVEIIPLEVVVRNVAAG----SLV------KR------LG--IEE 109 Query: 133 NQKLPYPVITPTTKSSESASGCDQP-ISPNEIIHRGILTRNQWETISSYALSLFERGCKL 191 LP P++ K+ P I+ + I+ G T + I AL + + L Sbjct: 110 GTVLPPPIVEFYYKNDA----LGDPMINEDHILALGWATPEELAEIKELALKINDVLKGL 165 Query: 192 ALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDF 251 G+ LVD K EFG DK I+LADEI +PD+ R W+ ET EK LDKD Sbjct: 166 FAGAGIRLVDFKLEFGRDKDGEIVLADEI-SPDTCRLWDKETNEK----------LDKDR 214 Query: 252 IRN 254 R Sbjct: 215 FRR 217 >gnl|CDD|184419 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional. Length = 341 Score = 80.5 bits (199), Expect = 5e-16 Identities = 83/367 (22%), Positives = 135/367 (36%), Gaps = 97/367 (26%) Query: 18 GKVRENYFLSD------GTRITIATDRLSAFDQNI--ACIPYKGEVLNQITQYWF----- 64 G V++ Y + G + +DR S FD I IP KG L + Y F Sbjct: 2 GSVKDFYVDEEPTETDLGRGRFVFSDRYSVFDWGIMPDEIPDKGASLCTMGAYNFELLEE 61 Query: 65 -----HHTS-----DICSNHTLDYPDPNVLVGQQLQ------------------------ 90 H+ ++ P PN + + Q Sbjct: 62 EGIKTHYIGVVEDGEVVRLAEASEP-PNEMAVKLTQVPDLPFEGGSYDYDAYHEAAGENY 120 Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEY-LLPDNMSDN-QKLPYPVITPTTKSS 148 + P+E+I R Y+ +SL K GK K + L D + KLP P++ +TK Sbjct: 121 LIPLEVIFRNYVP--VGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEFSTKYE 178 Query: 149 ESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGI 208 E D+ +S E L+R + E + AL + E + A + GLI D K EF + Sbjct: 179 EQ----DRYLSRKEADEIAGLSRAEIEELEELALKVDEIITEEAEKRGLIHEDGKIEFAL 234 Query: 209 DKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR--------------- 253 +++ I + D + T D +R+ +YE L K+ +R Sbjct: 235 YEEREIRVVDVVGTFDENRF----SYEG--------QELSKEVVRQYYRRTEWVEAVKEA 282 Query: 254 ------NWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSELPPLERI 307 +W R D P +P+ ++ S Y A TG ++ + PPL+ Sbjct: 283 KEEDVADW---RSLCEPD-PPPLPDEVVEAVSDLYKAGTNAYTGREWF----DAPPLKDA 334 Query: 308 RNNLRKY 314 + +R+ Sbjct: 335 VDRVREL 341 >gnl|CDD|107142 PHA02130, PHA02130, hypothetical protein. Length = 81 Score = 28.8 bits (64), Expect = 1.8 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%) Query: 242 ITPIGLDKDF-----IRNWILTRCNPYRDNIPDIP 271 I+P G +K F +R W+ R + + D+I IP Sbjct: 4 ISPTGKEKTFKSWESLREWLDERFDSWDDDILSIP 38 >gnl|CDD|183608 PRK12582, PRK12582, acyl-CoA synthetase; Provisional. Length = 624 Score = 28.1 bits (63), Expect = 3.3 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Query: 10 PELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPY 51 PE + G+V E++ LS GT +++ T R A AC P Sbjct: 468 PEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA---ACSPV 506 >gnl|CDD|184352 PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional. Length = 162 Score = 27.0 bits (60), Expect = 6.7 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 287 EKITGLKFIADNSELPPLE 305 E + GL+ AD+++LPPLE Sbjct: 67 EALVGLRVYADDADLPPLE 85 >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. Length = 254 Score = 26.6 bits (59), Expect = 9.7 Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 46 IACIPYKGEVLNQITQYWFHHTSDI 70 I C YKG V+ + +F H SD+ Sbjct: 49 IICCGYKGYVIKEYFANYFLHMSDV 73 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.137 0.413 Gapped Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,405,043 Number of extensions: 342892 Number of successful extensions: 703 Number of sequences better than 10.0: 1 Number of HSP's gapped: 672 Number of HSP's successfully gapped: 24 Length of query: 323 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 229 Effective length of database: 3,963,321 Effective search space: 907600509 Effective search space used: 907600509 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.9 bits)