RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780493|ref|YP_003064906.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
(323 letters)
>gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 313
Score = 525 bits (1356), Expect = e-150
Identities = 172/317 (54%), Positives = 220/317 (69%), Gaps = 7/317 (2%)
Query: 1 MRILSKAYIPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQIT 60
R L++ PELPN Y GKVR+NY L DG R+ +ATDR+SAFD+ + IPYKG+VLNQ
Sbjct: 4 PRTLTEFNFPELPNVYRGKVRDNYDLPDGRRVMVATDRISAFDRVLPAIPYKGQVLNQTA 63
Query: 61 QYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRK 120
+WF T DIC NH L PDPNV+VG++ + FP+E++VRGYLAG+T YK GKR+
Sbjct: 64 AFWFEATKDICPNHVLAVPDPNVVVGKRCEPFPVEMVVRGYLAGST----WRLYKAGKRE 119
Query: 121 IYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSY 180
+Y LPD + +NQKLP P+ITPTTK+ E G D+PISP EI+ +G+LT W+ +S Y
Sbjct: 120 MYGVTLPDGLRENQKLPEPIITPTTKAEEG--GHDEPISPEEILAQGLLTPEDWDELSKY 177
Query: 181 ALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFRE 240
AL+LF RG ++A E GLILVD+KYEFG D I+L DEIHTPDSSRYW + YE+ F
Sbjct: 178 ALALFARGQEMAAERGLILVDTKYEFGKDADGRIVLIDEIHTPDSSRYWYADGYEERFAA 237
Query: 241 GITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSE 300
G LDK+F+R W++ RC PY IP+IP+ +I+ S+ YI YEKITG F+ D+
Sbjct: 238 GEPQEQLDKEFVRQWLIERCGPYGQEIPEIPDEVIVSVSERYIELYEKITGETFVPDSGS 297
Query: 301 LPPLERIRNNLRKYTHR 317
PPL RIR NL Y R
Sbjct: 298 -PPLARIRKNLAAYLAR 313
>gnl|CDD|178159 PLN02544, PLN02544, phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 370
Score = 331 bits (851), Expect = 1e-91
Identities = 138/304 (45%), Positives = 196/304 (64%), Gaps = 6/304 (1%)
Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQITQYWFHHTS 68
+P L + GKVR+ Y L D + + TDR SAFD+ +A IP+KG+VLNQ + +WF++T
Sbjct: 72 VPGLGSRRRGKVRDIYDLGD-YLVLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTK 130
Query: 69 DICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPD 128
I N + PDPNV + ++ +FP+E +VRGY+ G+T TSL T Y G R LPD
Sbjct: 131 HITPNALVSSPDPNVTIAKKCSVFPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPD 190
Query: 129 NMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERG 188
M NQKLP ++TPTTK+++ D PISP EI+ G++T+ ++ +SS AL+LF G
Sbjct: 191 GMVKNQKLPANILTPTTKAADH----DVPISPEEIVEEGLMTQEDFDEVSSKALALFAFG 246
Query: 189 CKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLD 248
++A E+GLILVD+KYEFG D I+L DE+HTPDSSRYW ++YE+ G+ P +D
Sbjct: 247 QEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYWLADSYEERHAAGLEPENID 306
Query: 249 KDFIRNWILTRCNPYRDN-IPDIPENIILRTSQTYIAAYEKITGLKFIADNSELPPLERI 307
K+F+R W C+PY+D +P+ P ++ S YI YE ITG KF +++ P ERI
Sbjct: 307 KEFLRLWFKENCDPYKDEVLPEAPAELVCELSWRYIKLYETITGEKFEVPDTQEPIHERI 366
Query: 308 RNNL 311
N+
Sbjct: 367 SRNV 370
>gnl|CDD|184421 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 296
Score = 233 bits (598), Expect = 4e-62
Identities = 95/304 (31%), Positives = 150/304 (49%), Gaps = 35/304 (11%)
Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIAC-IPYKGEVLNQITQYWFHHT 67
+P LP GKVR+ Y + D + +ATDR+SAFD + IP KG VL Q++ +WF
Sbjct: 9 LPSLPLLGRGKVRDIYAVDDDRLLMVATDRISAFDVILPEPIPDKGRVLTQMSNFWFDKL 68
Query: 68 SDICSNHTLDYPDPNV-------------LVGQQLQMFPIELIVRGYLAGNTKTSLLTFY 114
+ I NH +V +V ++L+ P+E +VRGYL G S Y
Sbjct: 69 AHIVPNHLTGIDVDDVVPADEADQVLGRAVVVKKLKPLPVECVVRGYLTG----SGWKDY 124
Query: 115 KNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGC-DQPISPNEIIHRGILTRNQ 173
+ + LP + + KLP P+ TP TK+ G D+ IS E++ ++
Sbjct: 125 QA-TGTVCGIKLPAGLVEASKLPEPIFTPATKA---ELGDHDENISFEEVVE--LVGAEL 178
Query: 174 WETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVET 233
+ L++++ A G+I+ D+K+EFG+D+ + L DE+ TPDSSR+W ++
Sbjct: 179 AAQLRDATLAIYKEAADYAATRGIIIADTKFEFGLDEDGTLTLMDEVLTPDSSRFWPADS 238
Query: 234 YEKSFREGITPIGLDKDFIRNWILTRCNPYRDNI---PDIPENIILRTSQTYIAAYEKIT 290
Y+ G + DK F+R+W L D P +P ++I +T Y A E++T
Sbjct: 239 YQ----PGTSQPSFDKQFVRDW-LETSGW--DKTAPAPPLPADVIEKTRAKYREALERLT 291
Query: 291 GLKF 294
G
Sbjct: 292 GKSL 295
>gnl|CDD|161698 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide
synthase. Check length. Longer versions may be
multifunctional enzymes.
Length = 237
Score = 138 bits (349), Expect = 2e-33
Identities = 80/286 (27%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 9 IPELPNYYSGKVRENYFLSDGTRI-TIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHH 66
I + YSGK ++ Y D + + D +SAFD + IP KG + +I+ + F
Sbjct: 3 IKKRQKLYSGKAKDIYETDDPDLLRFVFRDDISAFDGEKKDQIPGKGRLNTKISAFIFEK 62
Query: 67 TSDICS-NHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYL 125
+ H +D + ++ ++L + P+E+IVR AG SLL
Sbjct: 63 LEEAGIPTHYIDLIEDREMLVKKLDIIPLEVIVRNIAAG----SLLKRLG---------- 108
Query: 126 LPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLF 185
+ + +L P++ K E D ++ + G+ T + E I AL +
Sbjct: 109 ----IPEGLELEQPLVEFIFKPDEVG---DPMLNESYAEALGLATEEELERIKELALKVN 161
Query: 186 ERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPI 245
E K E G+ILVD K EFG+D++ N+ILADE+ +PD+ R W+ ETYE +
Sbjct: 162 EVLKKYFDEKGIILVDFKLEFGLDEEGNLILADEV-SPDTCRLWDKETYEVGAPK----- 215
Query: 246 GLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITG 291
LDKD R RT I AYE +
Sbjct: 216 -LDKDIFR-----------------------RTLGKLIEAYETVAR 237
>gnl|CDD|131782 TIGR02735, purC_vibrio,
phosphoribosylaminoimidazole-succinocarboxamide
synthase, Vibrio type. Members of this protein family
appear to represent a novel form of
phosphoribosylaminoimidazole-succinocarboxamide synthase
(SAICAR synthetase), significantly different in sequence
and gap pattern from a form (see TIGR00081) shared by a
broad range of bacteria and eukaryotes. Members of this
family are found within the gammaproteobacteria in the
genera Vibrio, Shewanella, and Colwellia, and also
(reported as a fragment) in the primitive eukarote
Guillardia theta.
Length = 365
Score = 120 bits (303), Expect = 4e-28
Identities = 102/331 (30%), Positives = 153/331 (46%), Gaps = 66/331 (19%)
Query: 16 YSGKVRENYFLS--DGTR----------------ITIATDRLSAFDQNIACI-------- 49
+SGKVR Y+L+ D R I + +DR+SAFD CI
Sbjct: 22 HSGKVRSVYWLTEEDSRRLIEEKGYPVAHDAPLAIMVISDRISAFD----CIWHAEGGLN 77
Query: 50 --PYKGEVLNQITQYWFH--HTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGN 105
P KG LN I+ +WF + + +H LD P P V + Q+ + IE I R Y+ G
Sbjct: 78 GVPGKGAALNAISNHWFKLFAEAGLAESHILDIPHPFVWIVQKAKPVKIEAICRQYITG- 136
Query: 106 TKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSS-ESASGC----DQPISP 160
S+ Y G+R LP+ ++ +Q+LP +ITP+TK E G D I+
Sbjct: 137 ---SMWRAYAKGERVFCGIDLPEGLAKDQRLPELLITPSTKGILEGIPGVPAIDDVNITR 193
Query: 161 NEI-IHRGILTRNQWETISSYALSLFERGCKL---ALEN-GLILVDSKYEFG----IDKK 211
+I + Q E I Y L G + L G + VD+K+EFG ++
Sbjct: 194 ADIERNWSAFNFEQPEDIDHYE-RLLREGFAVISDRLSKLGQLFVDTKFEFGYVTDVEGT 252
Query: 212 QNIILADEIHTPDSSRYWE---------VETYEKSFREGITPIGLDKDFIRN--WILTRC 260
+ +I DE+ TPDSSR W+ VE ++ FR+ + D D + N ++ R
Sbjct: 253 RKLIYMDEVGTPDSSRIWDAGAYAQGKIVENSKEGFRQALLNWFPDPDILLNKDRMVERA 312
Query: 261 NPYRDNIPDIPENIILRTSQTYIAAYEKITG 291
RDN +P+ +++ S+TY+ EKITG
Sbjct: 313 ALARDNA--LPQEMLMDVSETYLGIAEKITG 341
>gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 367
Score = 117 bits (296), Expect = 3e-27
Identities = 103/336 (30%), Positives = 149/336 (44%), Gaps = 61/336 (18%)
Query: 16 YSGKVRENYFL--SDGTR----------------ITIATDRLSAFD------QNIACIPY 51
+SGKVR Y+L D R I + +DR+SAFD + +P
Sbjct: 23 HSGKVRSVYWLTEEDSRRLIKEKGYNVPADAPLAIMVISDRISAFDCIWHGEGGLNGVPG 82
Query: 52 KGEVLNQITQYWFHHTSD--ICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTS 109
KG LN I+ +WF + + +H LD P P V + Q+ + IE I R Y+ G S
Sbjct: 83 KGAALNAISNHWFKLFKENGLADSHILDIPHPFVWIVQKARPVMIEAICRQYITG----S 138
Query: 110 LLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSS-ESASGCDQPISPNEIIHRGI 168
+ Y G+R+ LP+ + +QKLP +ITP+TK G + N I R
Sbjct: 139 MWRAYSKGEREFCGITLPEGLEKDQKLPELLITPSTKGILTGIPGVPEADDVN--ISRSD 196
Query: 169 LTRN----QWETISSYAL--SLFERGCKL---ALEN-GLILVDSKYEFG----IDKKQNI 214
+ N + + L L + G K+ AL I VD+K+EFG + +
Sbjct: 197 IEANYQAFNFSSADDIDLYEKLLKEGFKVISDALAKLDQIFVDTKFEFGYVTDAAGNEKL 256
Query: 215 ILADEIHTPDSSRYWEVETY------EKS---FREGITPIGLDKDFIRN--WILTRCNPY 263
I DE+ TPDSSR W+ Y E S FR+ + D D + N + R
Sbjct: 257 IYMDEVGTPDSSRIWDGAAYRDGKIVENSKEGFRQFLLNHFPDPDILLNKDRMPEREALA 316
Query: 264 RDNIPDIPENIILRTSQTYIAAYEKITGLKF-IADN 298
RDN +P ++ S+TY EKITG K ++ N
Sbjct: 317 RDN--ALPLEAMMDVSRTYTGIAEKITGAKIVLSAN 350
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed.
Length = 238
Score = 99.8 bits (250), Expect = 8e-22
Identities = 70/243 (28%), Positives = 106/243 (43%), Gaps = 37/243 (15%)
Query: 16 YSGKVRENYFLSD-GTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSDI-CS 72
Y GK + Y D I D +AF+ + I KG + NQI+ + F +
Sbjct: 8 YEGKAKIVYSTDDPDLLIVEFKDDATAFNGEKKEQIDGKGVLNNQISSFIFKKLEEAGIP 67
Query: 73 NHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSD 132
H ++ + +++++ P+E++VR AG SL+ KR L + +
Sbjct: 68 THFIEKLSDREQLVKKVEIIPLEVVVRNVAAG----SLV------KR------LG--IEE 109
Query: 133 NQKLPYPVITPTTKSSESASGCDQP-ISPNEIIHRGILTRNQWETISSYALSLFERGCKL 191
LP P++ K+ P I+ + I+ G T + I AL + + L
Sbjct: 110 GTVLPPPIVEFYYKNDA----LGDPMINEDHILALGWATPEELAEIKELALKINDVLKGL 165
Query: 192 ALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDF 251
G+ LVD K EFG DK I+LADEI +PD+ R W+ ET EK LDKD
Sbjct: 166 FAGAGIRLVDFKLEFGRDKDGEIVLADEI-SPDTCRLWDKETNEK----------LDKDR 214
Query: 252 IRN 254
R
Sbjct: 215 FRR 217
>gnl|CDD|184419 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 341
Score = 80.5 bits (199), Expect = 5e-16
Identities = 83/367 (22%), Positives = 135/367 (36%), Gaps = 97/367 (26%)
Query: 18 GKVRENYFLSD------GTRITIATDRLSAFDQNI--ACIPYKGEVLNQITQYWF----- 64
G V++ Y + G + +DR S FD I IP KG L + Y F
Sbjct: 2 GSVKDFYVDEEPTETDLGRGRFVFSDRYSVFDWGIMPDEIPDKGASLCTMGAYNFELLEE 61
Query: 65 -----HHTS-----DICSNHTLDYPDPNVLVGQQLQ------------------------ 90
H+ ++ P PN + + Q
Sbjct: 62 EGIKTHYIGVVEDGEVVRLAEASEP-PNEMAVKLTQVPDLPFEGGSYDYDAYHEAAGENY 120
Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEY-LLPDNMSDN-QKLPYPVITPTTKSS 148
+ P+E+I R Y+ +SL K GK K + L D + KLP P++ +TK
Sbjct: 121 LIPLEVIFRNYVP--VGSSLRDRIKEGKIKPEDLGLDADEWPEEGVKLPEPIVEFSTKYE 178
Query: 149 ESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGI 208
E D+ +S E L+R + E + AL + E + A + GLI D K EF +
Sbjct: 179 EQ----DRYLSRKEADEIAGLSRAEIEELEELALKVDEIITEEAEKRGLIHEDGKIEFAL 234
Query: 209 DKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR--------------- 253
+++ I + D + T D +R+ +YE L K+ +R
Sbjct: 235 YEEREIRVVDVVGTFDENRF----SYEG--------QELSKEVVRQYYRRTEWVEAVKEA 282
Query: 254 ------NWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSELPPLERI 307
+W R D P +P+ ++ S Y A TG ++ + PPL+
Sbjct: 283 KEEDVADW---RSLCEPD-PPPLPDEVVEAVSDLYKAGTNAYTGREWF----DAPPLKDA 334
Query: 308 RNNLRKY 314
+ +R+
Sbjct: 335 VDRVREL 341
>gnl|CDD|107142 PHA02130, PHA02130, hypothetical protein.
Length = 81
Score = 28.8 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 242 ITPIGLDKDF-----IRNWILTRCNPYRDNIPDIP 271
I+P G +K F +R W+ R + + D+I IP
Sbjct: 4 ISPTGKEKTFKSWESLREWLDERFDSWDDDILSIP 38
>gnl|CDD|183608 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 28.1 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 10 PELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPY 51
PE + G+V E++ LS GT +++ T R A AC P
Sbjct: 468 PEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA---ACSPV 506
>gnl|CDD|184352 PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 162
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 287 EKITGLKFIADNSELPPLE 305
E + GL+ AD+++LPPLE
Sbjct: 67 EALVGLRVYADDADLPPLE 85
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate
cytidylyltransferase. Members of this family are the
enzyme glucose-1-phosphate cytidylyltransferase, also
called CDP-glucose pyrophosphorylase, the product of
the rfbF gene.
Length = 254
Score = 26.6 bits (59), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 46 IACIPYKGEVLNQITQYWFHHTSDI 70
I C YKG V+ + +F H SD+
Sbjct: 49 IICCGYKGYVIKEYFANYFLHMSDV 73
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,405,043
Number of extensions: 342892
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 24
Length of query: 323
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 229
Effective length of database: 3,963,321
Effective search space: 907600509
Effective search space used: 907600509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)