RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] (323 letters) >d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 304 Score = 185 bits (470), Expect = 5e-48 Identities = 90/308 (29%), Positives = 153/308 (49%), Gaps = 38/308 (12%) Query: 11 ELPNYYSGKVRENYFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSD 69 LP GKVR+ Y + GT + +ATDR+SA+D IP KG +L +++++WF S+ Sbjct: 10 ILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSN 69 Query: 70 ICSNHTLDYPDP----------------------NVLVGQQLQMFPIELIVRGYLAGNTK 107 NH +D L+ + ++ P+E+IVRGY+ G+ Sbjct: 70 DVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAW 129 Query: 108 TSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRG 167 ++ P + ++Q+ P P+ TP+TK+ + + + + Sbjct: 130 KE-----YVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQ----GEHDENISPAQAAE 180 Query: 168 ILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQN-IILADEIHTPDSS 226 ++ + ++ A+ L+ + A E G+I+ D+K+EFGID+K N IIL DE+ TPDSS Sbjct: 181 LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 240 Query: 227 RYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAY 286 R+W +Y+ G + DK F+R+W+ + +P++I+ RT YI AY Sbjct: 241 RFWNGASYK----VGESQDSYDKQFLRDWLTANKLNGVNG-VKMPQDIVDRTRAKYIEAY 295 Query: 287 EKITGLKF 294 E +TG K+ Sbjct: 296 ETLTGSKW 303 >d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Length = 224 Score = 129 bits (326), Expect = 2e-31 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%) Query: 24 YFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDP 81 ++ + D ++A D + KG + + T + S+ H ++Y P Sbjct: 4 VKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYIPP 63 Query: 82 NVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVI 141 L L+MFP+E++VR AG+ + Y + + P P++ Sbjct: 64 RTLKVIPLKMFPLEVVVRLKKAGS----FVRRYGGAEGEDL--------------PVPLV 105 Query: 142 TPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVD 201 K E D + + + GI T+ Q E + A+ + + L D Sbjct: 106 EFFIKDDE---RHDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWD 162 Query: 202 SKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCN 261 KYEFG+DK N++L DEI +PD+ R + DKD R + Sbjct: 163 IKYEFGLDKDGNVVLGDEI-SPDTFRLRKKGEI------------FDKDVYRRDLGDPLK 209 Query: 262 PYRD 265 YR+ Sbjct: 210 KYRE 213 >d1c5ea_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage lambda [TaxId: 10710]} Length = 95 Score = 26.5 bits (58), Expect = 2.8 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 102 LAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135 +A + ++ LTFYK+G + + L P+ SD K Sbjct: 49 VAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 82 >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 204 Score = 26.1 bits (56), Expect = 4.6 Identities = 9/102 (8%), Positives = 22/102 (21%) Query: 34 IATDRLSAFDQNIACIPYKGEVLNQITQYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFP 93 I + L C + Y + ++V + Sbjct: 6 IEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLIVFHNGHKYD 65 Query: 94 IELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135 + + + + L + L+ N+ D Sbjct: 66 VPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDM 107 >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Score = 25.8 bits (56), Expect = 5.3 Identities = 8/76 (10%), Positives = 17/76 (22%) Query: 58 QITQYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNG 117 + + F T I Y V Q I + Sbjct: 197 KFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTP 256 Query: 118 KRKIYEYLLPDNMSDN 133 +Y ++ ++ + Sbjct: 257 DSGLYSFINQGCLTVD 272 >d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} Length = 31 Score = 25.4 bits (56), Expect = 6.2 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 147 SSESASGCDQPISPNEIIHR 166 +S + S C Q I +E++ R Sbjct: 1 NSGACSACGQSIPASELVMR 20 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.137 0.413 Gapped Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,271,955 Number of extensions: 60092 Number of successful extensions: 128 Number of sequences better than 10.0: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 10 Length of query: 323 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 238 Effective length of database: 1,240,546 Effective search space: 295249948 Effective search space used: 295249948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.8 bits)