RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780493|ref|YP_003064906.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (323 letters)



>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 304

 Score =  185 bits (470), Expect = 5e-48
 Identities = 90/308 (29%), Positives = 153/308 (49%), Gaps = 38/308 (12%)

Query: 11  ELPNYYSGKVRENYFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSD 69
            LP    GKVR+ Y +  GT + +ATDR+SA+D      IP KG +L +++++WF   S+
Sbjct: 10  ILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSN 69

Query: 70  ICSNHTLDYPDP----------------------NVLVGQQLQMFPIELIVRGYLAGNTK 107
              NH +D                            L+  + ++ P+E+IVRGY+ G+  
Sbjct: 70  DVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAW 129

Query: 108 TSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRG 167
                        ++    P  + ++Q+ P P+ TP+TK+ +     +   + +      
Sbjct: 130 KE-----YVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQ----GEHDENISPAQAAE 180

Query: 168 ILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQN-IILADEIHTPDSS 226
           ++  +    ++  A+ L+ +    A E G+I+ D+K+EFGID+K N IIL DE+ TPDSS
Sbjct: 181 LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 240

Query: 227 RYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAY 286
           R+W   +Y+     G +    DK F+R+W+        +    +P++I+ RT   YI AY
Sbjct: 241 RFWNGASYK----VGESQDSYDKQFLRDWLTANKLNGVNG-VKMPQDIVDRTRAKYIEAY 295

Query: 287 EKITGLKF 294
           E +TG K+
Sbjct: 296 ETLTGSKW 303


>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId:
           2336]}
          Length = 224

 Score =  129 bits (326), Expect = 2e-31
 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)

Query: 24  YFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDP 81
             ++    +    D ++A D      +  KG +  + T     + S+     H ++Y  P
Sbjct: 4   VKVTGDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYIPP 63

Query: 82  NVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVI 141
             L    L+MFP+E++VR   AG+     +  Y   + +                P P++
Sbjct: 64  RTLKVIPLKMFPLEVVVRLKKAGS----FVRRYGGAEGEDL--------------PVPLV 105

Query: 142 TPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVD 201
               K  E     D  +  + +   GI T+ Q E +   A+ +     +        L D
Sbjct: 106 EFFIKDDE---RHDPMVCVDHLEILGIATKKQAEKMKEAAVKITLALKEFFERANFELWD 162

Query: 202 SKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCN 261
            KYEFG+DK  N++L DEI +PD+ R  +                 DKD  R  +     
Sbjct: 163 IKYEFGLDKDGNVVLGDEI-SPDTFRLRKKGEI------------FDKDVYRRDLGDPLK 209

Query: 262 PYRD 265
            YR+
Sbjct: 210 KYRE 213


>d1c5ea_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid
           protein D) {Bacteriophage lambda [TaxId: 10710]}
          Length = 95

 Score = 26.5 bits (58), Expect = 2.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 102 LAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135
           +A +  ++ LTFYK+G  +  + L P+  SD  K
Sbjct: 49  VAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 82


>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase
           {Bacteriophage T7 [TaxId: 10760]}
          Length = 204

 Score = 26.1 bits (56), Expect = 4.6
 Identities = 9/102 (8%), Positives = 22/102 (21%)

Query: 34  IATDRLSAFDQNIACIPYKGEVLNQITQYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFP 93
           I  + L        C         +   Y              +     ++V      + 
Sbjct: 6   IEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVARGGLIVFHNGHKYD 65

Query: 94  IELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135
           +  + +       +   L         +   L+  N+ D   
Sbjct: 66  VPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDM 107


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 25.8 bits (56), Expect = 5.3
 Identities = 8/76 (10%), Positives = 17/76 (22%)

Query: 58  QITQYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNG 117
           +  +  F  T  I       Y      V  Q        I     +              
Sbjct: 197 KFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTP 256

Query: 118 KRKIYEYLLPDNMSDN 133
              +Y ++    ++ +
Sbjct: 257 DSGLYSFINQGCLTVD 272


>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 31

 Score = 25.4 bits (56), Expect = 6.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 147 SSESASGCDQPISPNEIIHR 166
           +S + S C Q I  +E++ R
Sbjct: 1   NSGACSACGQSIPASELVMR 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,271,955
Number of extensions: 60092
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 10
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)