HHsearch alignment for GI: 254780494 and conserved domain: TIGR01297

>TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane.
Probab=100.00  E-value=7.6e-35  Score=233.38  Aligned_cols=277  Identities=19%  Similarity=0.260  Sum_probs=250.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             89999999999999999999999983799999999999999999999999999820000120378964375204568999
Q gi|254780494|r   12 ESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEPM   91 (314)
Q Consensus        12 ~~~L~~sl~~~~~~a~~~~~~g~~sgS~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p~G~~r~E~l   91 (314)
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~d~~h~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~G~~~~e~~   73 (294)
T TIGR01297         2 KRALLISLLLNLLLLLVELVGGLLSGSLALLADALHSLSDVLALLIALLALRL--------SEKPPDERHPFGYGRAEVL   73 (294)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCCCCCCCHHHHHHH
T ss_conf             31688899999999999999998730478888777889999999999999987--------4157755566532689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC--CHHHHHHHHHH
Q ss_conf             99999999999999999999998514---7987651179999999999866889987641--03577--79999999875
Q gi|254780494|r   92 VLAFNSVILICVALYEFLISILNIIS---GGHDINFEKAVIYSCVASFICLMMGVYENRC--NREIK--SDFIALDAKSW  164 (314)
Q Consensus        92 ~~l~~~~~l~~~~~~i~~~si~~l~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--~~~~~--s~~l~~~~~~~  164 (314)
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  151 (294)
T TIGR01297        74 AALLNGLFLVVVALFILYEAIERLLNGHAPE-EIDG-LALIVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHV  151 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999999999999999999875002441-1357-8999999999999999999986420221100147899999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHH-HHHHHHHH
Q ss_conf             78874213579999999983--013444204679989999999999998899999999999530997-899-99999997
Q gi|254780494|r  165 IVAGYLLLAVVIAFLCAMLL--RDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSP-DLD-SQVREALY  240 (314)
Q Consensus       165 ~~D~~~s~~v~i~~~~~~~~--~~~~~~~~~~~~D~i~alii~l~ii~~~~~~~~~~~~~Ll~~~~~-~~~-~~I~~~i~  240 (314)
T Consensus       152 ~~d~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  224 (294)
T TIGR01297       152 LGDLLGSLGVLIGALLIYFGPFGWT-------WADPIAALLISLLILYTAFRLLKESINVLLDGAPPELLDLIEVKKVLL  224 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             8888999999999999874025503-------777899999999999989999999999985103530356999999997


Q ss_pred             -HCCCCCCCEEEEEEEEEECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC-C-EEEEEEEECCC
Q ss_conf             -15761151000167870467-69999999988899861099999999999999865489-2-19999985476
Q gi|254780494|r  241 -PIVIRHGFLDFYTYVTKVGR-SRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGE-E-RWLTISFTTQK  310 (314)
Q Consensus       241 -~~~~v~~v~~~~i~~~~~G~-~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~-~-~~~~i~F~~~~  310 (314)
T Consensus       225 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (294)
T TIGR01297       225 LSIPGVKGVHDLHIW--RIGPGKLVLDVHVEVDPDL---DLKEAHDIALEIEREILKRHPFGIEHVTIHVEPLG  293 (294)
T ss_pred             HHCCCCCCHHHHEEE--EECCCCEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             515641110221023--2146725789888754643---25678999999999886405665316888740368