HHsearch alignment for GI: 254780494 and conserved domain: TIGR01297
>TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane.
Probab=95.83 E-value=0.13 Score=28.67 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCC-CCHHHHHHH
Q ss_conf 9999999999999999--99983--799999999999999999999999999820000120378964375-204568999
Q gi|254780494|r 17 LSICMTIFMASVNLII--GTITN--SSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQ-FGFWHFEPM 91 (314)
Q Consensus 17 ~sl~~~~~~a~~~~~~--g~~sg--S~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p-~G~~r~E~l 91 (314)
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~~d~~ 181 (294)
T TIGR01297 116 LGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSLGVLIGALLIY--------------FGPFGWTWADPI 181 (294)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHCCCCHHHHHH
T ss_conf 999999999999986420221100147899999998888899999999999987--------------402550377789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999998514798
Q gi|254780494|r 92 VLAFNSVILICVALYEFLISILNIISGGH 120 (314)
Q Consensus 92 ~~l~~~~~l~~~~~~i~~~si~~l~~~~~ 120 (314)
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (294)
T TIGR01297 182 AALLISLLILYTAFRLLKESINVLLDGAP 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999899999999999851035