Query gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 314
No_of_seqs 131 out of 2011
Neff 8.3
Searched_HMMs 23785
Date Tue May 31 21:32:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780494.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h90_A Ferrous-iron efflux pum 100.0 0 0 361.4 16.5 278 12-310 3-281 (283)
2 3byp_A CZRB protein; membrane 99.3 3.5E-11 1.5E-15 86.3 11.9 84 222-310 1-87 (94)
3 2zzt_A Putative uncharacterize 99.1 3.4E-10 1.4E-14 80.2 8.8 77 228-309 8-85 (107)
4 3h90_A Ferrous-iron efflux pum 96.9 0.00063 2.6E-08 41.6 3.9 84 18-117 117-200 (283)
5 3cq1_A Putative uncharacterize 92.7 0.37 1.6E-05 24.5 6.9 80 228-313 4-88 (103)
6 1uwd_A Hypothetical protein TM 86.3 1.3 5.7E-05 21.1 5.7 75 233-313 9-89 (103)
7 2vv5_A MSCS, small-conductance 82.4 2 8.4E-05 20.0 11.0 79 230-311 200-282 (286)
8 1wh9_A 40S ribosomal protein S 68.8 4.7 0.0002 17.8 4.9 79 229-310 6-85 (92)
9 3lno_A Putative uncharacterize 58.0 7.4 0.00031 16.5 4.5 49 259-313 43-92 (108)
10 2jp3_A FXYD domain-containing 35.5 17 0.00071 14.3 4.8 35 76-111 5-39 (67)
11 2zxe_G FXYD10, phospholemman-l 33.2 18 0.00077 14.1 4.4 34 76-110 7-40 (74)
12 1mli_A Muconolactone isomerase 25.9 25 0.001 13.3 5.9 45 251-310 41-85 (96)
13 2aal_A Malonate semialdehyde d 25.8 25 0.001 13.3 5.2 52 263-314 66-117 (131)
14 1ghh_A DINI, DNA-damage-induci 23.8 27 0.0011 13.1 6.5 26 282-307 18-45 (81)
15 1ry2_A Acetyl-coenzyme A synth 22.2 29 0.0012 12.9 2.4 64 233-298 539-604 (663)
16 3gxs_A Phenylacetate-coenzyme 20.8 31 0.0013 12.7 7.5 71 233-307 17-87 (109)
No 1
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=0 Score=361.40 Aligned_cols=278 Identities=18% Similarity=0.158 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 89999999999999999999999983799999999999999999999999999820000120378964375204568999
Q gi|254780494|r 12 ESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEPM 91 (314)
Q Consensus 12 ~~~L~~sl~~~~~~a~~~~~~g~~sgS~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p~G~~r~E~l 91 (314)
+|++..++..|.+++++|+++|+++||.||++||+||+.|++++++++++.+++ +||||++|||||+|+|++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~tgS~allaDa~hs~~D~~~~~i~l~~~~~s--------~r~~d~~~pyG~~r~E~l 74 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYS--------LQPADDNHSFGHGKAESL 74 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHH--------TCCCCSSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCHHHHHH
T ss_conf 789999999999999999999999807999999999999999999999999982--------699875699840345079
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998514798765117999999999986688998764103577799999998757887421
Q gi|254780494|r 92 VLAFNSVILICVALYEFLISILNIISGGHDINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLL 171 (314)
Q Consensus 92 ~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~~~s 171 (314)
+++++++++++.++++++++++++++|+++..+.+++.+..++.+.+..++++.++.+|+.+|+.+++++.|++.|.++|
T Consensus 75 ~~l~~~~~l~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s 154 (283)
T 3h90_A 75 AALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMN 154 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999852334667764447876422326899998876521357866777788875369877
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCCCCEE
Q ss_conf 3579999999983013444204679989999999999998899999999999530997-899999999971576115100
Q gi|254780494|r 172 LAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSP-DLDSQVREALYPIVIRHGFLD 250 (314)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~~~~~~~~~~~~~Ll~~~~~-~~~~~I~~~i~~~~~v~~v~~ 250 (314)
+++++|+++.++ +++|+||++++++++++++.+++++|++.++|+|.+|+ +..+++++.+++.+++.++|+
T Consensus 155 ~~vl~~~~~~~~--------~~~~~D~i~~l~i~l~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~v~~v~~ 226 (283)
T 3h90_A 155 GAILLALGLSWY--------GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHD 226 (283)
T ss_dssp SCSCSSSCSCST--------TSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEE
T ss_pred HHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 599999999994--------952000899999999999999999999999981789986789999999976899730588
Q ss_pred EEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 016787046769999999988899861099999999999999865489219999985476
Q gi|254780494|r 251 FYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTTQK 310 (314)
Q Consensus 251 ~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~~~ 310 (314)
.++| +.|++.++|+|+++|+++ +++|.|++++++|+++++++|..+++||+++..
T Consensus 227 l~~~--~~G~~~~v~v~i~v~~~~---~~~~~~~i~~~ie~~l~~~~~~~~v~Ih~eP~~ 281 (283)
T 3h90_A 227 LRTR--QSGPTRFIQIHLEMEDSL---PLVQAHMVADQVEQAILRRFPGSDVIIHQDPCS 281 (283)
T ss_dssp EEEE--EETTEEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSC
T ss_pred EEEE--EECCCEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9999--988969999999989899---899999999999999997679986999947864
No 2
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.30 E-value=3.5e-11 Score=86.31 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=73.7
Q ss_pred HHHHCC-CHHHHHHHHHHHHHC--CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 995309-978999999999715--76115100016787046769999999988899861099999999999999865489
Q gi|254780494|r 222 EIFQMT-SPDLDSQVREALYPI--VIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 222 ~Ll~~~-~~~~~~~I~~~i~~~--~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
.|||.+ |++..++|++++.++ +++.++++ +|++++|+++++++|+.||+++ ++.+.|++.++++++|++.+|
T Consensus 1 gLmD~~~~~e~~~~I~~~i~~~~~~~v~~vh~--lr~r~~G~~~~vd~~i~v~~~~---sv~eaH~i~~~ve~~l~~~~~ 75 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHD--LKTRRAGPRSFLEFHLVVRGDT---PVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEE--EEEEEETTEEEEEEEEEECTTC---BHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE--EEEEEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCC
T ss_conf 98888889999999999999568998678888--8889989989999999989999---899999999999999996589
Q ss_pred CEEEEEEEECCC
Q ss_conf 219999985476
Q gi|254780494|r 299 ERWLTISFTTQK 310 (314)
Q Consensus 299 ~~~~~i~F~~~~ 310 (314)
..+++||+++..
T Consensus 76 ~~~v~iHveP~~ 87 (94)
T 3byp_A 76 GLQATIHVEPEG 87 (94)
T ss_dssp TEEEEEEEEECC
T ss_pred CCEEEEEECCCC
T ss_conf 977999989898
No 3
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.10 E-value=3.4e-10 Score=80.22 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEE
Q ss_conf 9789999999997157611510001678704676999999998889986109999999999999986548921-999998
Q gi|254780494|r 228 SPDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER-WLTISF 306 (314)
Q Consensus 228 ~~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~-~~~i~F 306 (314)
++++.++|+++++++|++.++++ +|++++|+.+++++|+.||+++ +++++|++.++++++|++.+|+. +++|+.
T Consensus 8 D~e~~~~I~~i~~~~pgV~~Vh~--lr~r~~G~~~~vd~hI~Vd~~~---sv~eaH~I~~~Ie~~I~~~~p~v~~v~IHv 82 (107)
T 2zzt_A 8 ELDMYDDIFAVLERFPNVHNPHR--VRIRRVGTKYFIEMDIEVDGKM---SVKDAHELTVKIRKEMLKRRDDIEDVTIHV 82 (107)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEEE--EEEECSCC-CEEEEEEEECTTS---CHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCEEEEEE--EEEEEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999999972999023125--8899989969999999989999---699999999999999998789973899997
Q ss_pred ECC
Q ss_conf 547
Q gi|254780494|r 307 TTQ 309 (314)
Q Consensus 307 ~~~ 309 (314)
++.
T Consensus 83 eP~ 85 (107)
T 2zzt_A 83 EPL 85 (107)
T ss_dssp EET
T ss_pred CCC
T ss_conf 888
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.93 E-value=0.00063 Score=41.62 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999983799999999999999999999999999820000120378964375204568999999999
Q gi|254780494|r 18 SICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNS 97 (314)
Q Consensus 18 sl~~~~~~a~~~~~~g~~sgS~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p~G~~r~E~l~~l~~~ 97 (314)
+.+.+..+.....-.+...+|.++.+|+.|...|..+++..+.+.-. .-+|+.-++++++++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s~~vl~~~~~----------------~~~~~~~~D~i~~l~i~ 180 (283)
T 3h90_A 117 ALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGL----------------SWYGWHRADALFALGIG 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCS----------------CSTTSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHCCCHHHHHHHHHHH
T ss_conf 22326899998876521357866777788875369877599999999----------------99495200089999999
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999998514
Q gi|254780494|r 98 VILICVALYEFLISILNIIS 117 (314)
Q Consensus 98 ~~l~~~~~~i~~~si~~l~~ 117 (314)
++++..++.++.++...++.
T Consensus 181 l~i~~~~~~~~~~~~~~Ll~ 200 (283)
T 3h90_A 181 IYILYSALRMGYEAVQSLLD 200 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999817
No 5
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=92.74 E-value=0.37 Score=24.52 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHCCCCC-CC--EEE-EEEEE-EECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 9789999999997157611-51--000-16787-0467699999999888998610999999999999998654892199
Q gi|254780494|r 228 SPDLDSQVREALYPIVIRH-GF--LDF-YTYVT-KVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWL 302 (314)
Q Consensus 228 ~~~~~~~I~~~i~~~~~v~-~v--~~~-~i~~~-~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~ 302 (314)
.....++|.+++..+..=+ +. -++ -++.. -.|....+.+.+..+.. |. .+.+++++++++++..+.-.+
T Consensus 4 ~~p~e~~v~~aL~~V~DPe~~~dIv~LGlV~~v~i~~~~V~v~l~lt~~~c-p~-----~~~i~~~i~~al~~~~gv~~V 77 (103)
T 3cq1_A 4 RNPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGC-PL-----HDSLGEAVRQALSRLPGVEEV 77 (103)
T ss_dssp CSHHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSC-CS-----SCHHHHHHHHHHHTSTTCCEE
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCC-CH-----HHHHHHHHHHHHHHCCCCCEE
T ss_conf 856899999998278899999881106877899997891699998378999-67-----899999999999808997438
Q ss_pred EEEEECCCCCC
Q ss_conf 99985476555
Q gi|254780494|r 303 TISFTTQKKWA 313 (314)
Q Consensus 303 ~i~F~~~~~~~ 313 (314)
.|+++.+|.|.
T Consensus 78 ~V~~~~~p~W~ 88 (103)
T 3cq1_A 78 EVEVTFEPPWT 88 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEEECCCCC
T ss_conf 99999569999
No 6
>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=86.34 E-value=1.3 Score=21.09 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCCC-CC--EEEE-EEEEEE-C-CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99999997157611-51--0001-678704-6-76999999998889986109999999999999986548921999998
Q gi|254780494|r 233 SQVREALYPIVIRH-GF--LDFY-TYVTKV-G-RSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314)
Q Consensus 233 ~~I~~~i~~~~~v~-~v--~~~~-i~~~~~-G-~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314)
++|.+++..+..=+ ++ -++. ++-.+. | ....+.+.+..+.. | -.+.+++++++++++..+...++|+|
T Consensus 9 e~V~~aL~~V~DPel~~~IvdLGlV~~i~i~~~g~v~v~~~lt~~~C-P-----~~~~i~~~i~~al~~~~gv~~V~V~~ 82 (103)
T 1uwd_A 9 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMC-P-----LAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp HHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCC-S-----SHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCEEEEEEEECCCCC-C-----HHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999981788999998844368343578626980899998689998-6-----57999999999998089974289999
Q ss_pred ECCCCCC
Q ss_conf 5476555
Q gi|254780494|r 307 TTQKKWA 313 (314)
Q Consensus 307 ~~~~~~~ 313 (314)
+.+|.|.
T Consensus 83 ~~~p~Wt 89 (103)
T 1uwd_A 83 TFDPPWT 89 (103)
T ss_dssp CCSSCCC
T ss_pred EECCCCC
T ss_conf 9669999
No 7
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=82.45 E-value=2 Score=20.03 Aligned_cols=79 Identities=8% Similarity=0.010 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEEEECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEE
Q ss_conf 8999999999715761151000167870467-6999999998889986109999999999999986548---92199999
Q gi|254780494|r 230 DLDSQVREALYPIVIRHGFLDFYTYVTKVGR-SRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLG---EERWLTIS 305 (314)
Q Consensus 230 ~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~-~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~---~~~~~~i~ 305 (314)
+..+.+++.+.+.+.+..-....++....|+ .+..++...+++. + ......++.+++.+.+++.. |-++.+++
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~~v~~~v~~~-~--~~~~~~~l~~~I~~~l~~~gI~i~~P~~~v~ 276 (286)
T 2vv5_A 200 QVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG-D--LQNVYWDVLERIKREFDAAGISFPYPQMDVN 276 (286)
T ss_dssp HHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETT-T--HHHHHHHHHHHHHHHHHHHTCCCCCCEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCH-H--HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 899999997640511015678558881037855999999998527-8--9999999999999999987972779968999
Q ss_pred EECCCC
Q ss_conf 854765
Q gi|254780494|r 306 FTTQKK 311 (314)
Q Consensus 306 F~~~~~ 311 (314)
|..+|+
T Consensus 277 ~~~~~~ 282 (286)
T 2vv5_A 277 FKRVKE 282 (286)
T ss_dssp EECC--
T ss_pred ECCCCC
T ss_conf 656887
No 8
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=68.84 E-value=4.7 Score=17.76 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 789999999997157611510001678704676999999998889986-1099999999999999865489219999985
Q gi|254780494|r 229 PDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPI-KRIASLDAIRHEIGNAIGGLGEERWLTISFT 307 (314)
Q Consensus 229 ~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~-~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~ 307 (314)
..+..+|++-+..-....++....+ .++.....+.+|..=|.- -+ +.-.+++.+++++++.+....+++.+.++-.
T Consensus 6 ~~f~aeIre~l~k~l~~AGis~IeI--eR~~~~i~I~I~tarPG~-vIGrkG~~I~~L~~~L~k~~~~~~~~i~l~ae~I 82 (92)
T 1wh9_A 6 SGFKAELNEFLTRELAEDGYSGVEV--RVTPTRTEIIILATRTQN-VLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKV 82 (92)
T ss_dssp CSHHHHHHHHHHHHTTTTTEEEEEE--EECSSCEEEEEEESCHHH-HHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEEEEECCCCC-EECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf 5479999999999887687365999--987991799999789762-4234755399999999999789998289985154
Q ss_pred CCC
Q ss_conf 476
Q gi|254780494|r 308 TQK 310 (314)
Q Consensus 308 ~~~ 310 (314)
.++
T Consensus 83 a~r 85 (92)
T 1wh9_A 83 ATR 85 (92)
T ss_dssp CCS
T ss_pred HHC
T ss_conf 325
No 9
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis}
Probab=58.02 E-value=7.4 Score=16.52 Aligned_cols=49 Identities=10% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCCC
Q ss_conf 676999999998889986109999999999999986548-9219999985476555
Q gi|254780494|r 259 GRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLG-EERWLTISFTTQKKWA 313 (314)
Q Consensus 259 G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~-~~~~~~i~F~~~~~~~ 313 (314)
+....+++.+..+.. |+ .+.+.+++++++++.. +.-.+.|+++.+|.|.
T Consensus 43 ~~~v~V~m~lT~~~C-P~-----~~~i~~~i~~~l~~~l~gv~~v~V~~~~~p~Wt 92 (108)
T 3lno_A 43 NNNAVITMTMTSIGC-PM-----AGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWS 92 (108)
T ss_dssp TCCEEEEECCSCTTC-TT-----HHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCC
T ss_pred CCEEEEEEECCCCCC-CC-----HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf 965999995187899-80-----899999999999964999854999999679999
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.52 E-value=17 Score=14.33 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 896437520456899999999999999999999999
Q gi|254780494|r 76 ERERYFQFGFWHFEPMVLAFNSVILICVALYEFLIS 111 (314)
Q Consensus 76 ~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~s 111 (314)
..|..|.|-|+++. +++++.+.+++.+++.++...
T Consensus 5 ~~d~pF~YDy~tLR-igGLi~a~vlf~~GiliilS~ 39 (67)
T 2jp3_A 5 DKGSPFYYDWESLQ-LGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp STTSGGGGGGHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHE-ECCCHHHHHHHHHHHHHHHCC
T ss_conf 25898614317841-434157999999999999868
No 11
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=33.24 E-value=18 Score=14.10 Aligned_cols=34 Identities=12% Similarity=0.416 Sum_probs=24.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89643752045689999999999999999999999
Q gi|254780494|r 76 ERERYFQFGFWHFEPMVLAFNSVILICVALYEFLI 110 (314)
Q Consensus 76 ~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ 110 (314)
+.+..|.|-|+.+. +++++.+.+++.+++.++..
T Consensus 7 ~~~dpF~YDy~tLR-igGLi~a~vLf~~GI~iils 40 (74)
T 2zxe_G 7 DNDERFTYDYYRLR-VVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp TCGGGGCCCHHHHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHH-CCCCHHHHHHHHHHHHHHHC
T ss_conf 76898514327850-32206799999999999984
No 12
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=25.93 E-value=25 Score=13.32 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=21.7
Q ss_pred EEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 016787046769999999988899861099999999999999865489219999985476
Q gi|254780494|r 251 FYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTTQK 310 (314)
Q Consensus 251 ~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~~~ 310 (314)
.++|-. .|+...+.+- .++ +.+| +++-|...+--.|.+|+-|+=-
T Consensus 41 ~~LWRv-~G~~~nisIf-dv~------s~de-------Lh~iL~~LPL~p~m~ieVtpL~ 85 (96)
T 1mli_A 41 RHLWRI-AGHYANYSVF-DVP------SVEA-------LHDTLMQLPLFPYMDIEVDGLC 85 (96)
T ss_pred EEEEEE-CCCCEEEEEE-ECC------CHHH-------HHHHHHCCCCCCCCCCEEEECC
T ss_conf 688985-4764378999-769------8799-------9999971999641245677735
No 13
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=25.80 E-value=25 Score=13.31 Aligned_cols=52 Identities=6% Similarity=0.194 Sum_probs=30.6
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
Q ss_conf 9999999888998610999999999999998654892199999854765559
Q gi|254780494|r 263 IIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTTQKKWAI 314 (314)
Q Consensus 263 ~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~~~~~~~ 314 (314)
++-++|...+.+.-+.-+-+..+.+.+.+.+...+.+.++.++......|+.
T Consensus 66 ~~~I~I~~~gRs~eqK~~l~~~lt~~l~~~~gi~~e~v~V~i~E~~~e~Wsf 117 (131)
T 2aal_A 66 VVLLTVISRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSDADWSF 117 (131)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCHHHCCC
T ss_conf 5699998289999999999999999999985969516999999888787701
No 14
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=23.84 E-value=27 Score=13.08 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHCCC--EEEEEEEE
Q ss_conf 999999999998654892--19999985
Q gi|254780494|r 282 LDAIRHEIGNAIGGLGEE--RWLTISFT 307 (314)
Q Consensus 282 ~~~i~~~i~~~l~~~~~~--~~~~i~F~ 307 (314)
.+.+++|+.++++..||+ .++.|.+-
T Consensus 18 ~~AL~~EL~kRl~~~fPD~~~~V~Vr~~ 45 (81)
T 1ghh_A 18 IDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9999999999866048998631898665
No 15
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=22.16 E-value=29 Score=12.87 Aligned_cols=64 Identities=8% Similarity=-0.004 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999997157611510001678704676999999998889986--1099999999999999865489
Q gi|254780494|r 233 SQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPI--KRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 233 ~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~--~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
.+|++.+.++|+|.+.-..-+.--..|... -+.|+..+.... .+-++..++++++.+.+++..+
T Consensus 539 ~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~--~a~Vvl~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~ 604 (663)
T 1ry2_A 539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAV--AAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG 604 (663)
T ss_dssp HHHHHHHHSSTTEEEEEEECCCCCTTSCCC--EEEEEEC------------CCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCEEE--EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999983998347999988879898389--999997488876633146899999999999984489
No 16
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=20.80 E-value=31 Score=12.70 Aligned_cols=71 Identities=8% Similarity=0.003 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 999999971576115100016787046769999999988899861099999999999999865489219999985
Q gi|254780494|r 233 SQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFT 307 (314)
Q Consensus 233 ~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~ 307 (314)
.+|++++.+++++.+..-.-+ .+.+..-...+-++..+... .+.++...+.+++.+.+++..+. ...|+|.
T Consensus 17 ~eIE~~l~~~~~v~~~~~~~v--~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~i~~~l~~~~gv-~~~v~~v 87 (109)
T 3gxs_A 17 IQIETILLQFKELGSDYLITL--ETAESNDEMTVEVELSQLFT-DDYGRLQALTREITRQLKDEILV-TPRVKLV 87 (109)
T ss_dssp HHHHHHHHTCTTEEEEEEEEE--EEETTEEEEEEEEEECTTCC-CCHHHHHHHHHHHHHHHHHHHSS-CCEEEEE
T ss_pred HHHHHHHHHCCCCCCEEEEEE--EECCCCCEEEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 999999983887031156888--74288826799999964633-31256677679999999998577-6403766
Done!