Query gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62] Match_columns 314 No_of_seqs 131 out of 2011 Neff 8.3 Searched_HMMs 13730 Date Wed Jun 1 10:14:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780494.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2qfia2 f.59.1.1 (A:5-208) Fer 100.0 4.1E-41 2.8E-45 269.2 -35.9 202 9-226 3-204 (204) 2 d3bypa1 d.52.9.1 (A:6-87) Puta 99.2 1.8E-10 1.3E-14 80.4 11.9 78 226-308 1-80 (82) 3 d2qfia1 d.52.9.1 (A:209-290) F 98.8 4.3E-11 3.1E-15 84.3 -3.0 78 227-309 2-79 (82) 4 d2cu6a1 d.52.8.2 (A:6-96) Hypo 87.0 0.72 5.2E-05 21.3 6.1 76 232-313 3-83 (91) 5 d1uwda_ d.52.8.2 (A:) Hypothet 86.9 0.72 5.2E-05 21.3 5.6 32 282-313 57-88 (102) 6 d2qfia2 f.59.1.1 (A:5-208) Fer 74.7 0.00091 6.6E-08 39.2 -12.8 97 132-228 10-106 (204) 7 d1wh9a_ d.52.3.1 (A:) Ribosoma 53.1 5.2 0.00038 16.0 4.9 79 229-310 6-85 (92) 8 d1iwga1 d.58.44.1 (A:38-134) M 46.0 5.4 0.0004 15.9 2.2 69 225-298 14-83 (97) 9 d2vv5a2 d.58.43.1 (A:180-280) 41.1 8 0.00058 14.9 10.9 78 227-307 17-99 (101) 10 d1fftb2 f.17.2.1 (B:27-117) Cy 30.9 12 0.00084 13.9 4.2 27 83-109 57-83 (91) 11 d1ghha_ d.57.1.1 (A:) DNA dama 25.1 15 0.0011 13.2 6.5 26 282-307 18-45 (81) 12 d1mlia_ d.58.4.1 (A:) Muconala 24.9 15 0.0011 13.2 5.8 46 251-311 41-86 (96) No 1 >d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Probab=99.97 E-value=4.1e-41 Score=269.21 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=186.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHH Q ss_conf 99889999999999999999999999983799999999999999999999999999820000120378964375204568 Q gi|254780494|r 9 KSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHF 88 (314) Q Consensus 9 ~~e~~~L~~sl~~~~~~a~~~~~~g~~sgS~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p~G~~r~ 88 (314) |.+||++++++..|+.+++.|+++|+++||+++++||+||+.|++++++++++.+. ++||||++|||||+|+ T Consensus 3 r~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~--------s~k~~d~~~pyG~~r~ 74 (204) T d2qfia2 3 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRY--------SLQPADDNHSFGHGKA 74 (204) T ss_dssp SSSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTT--------SSSSCSTTSSCSCCTH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCCCCCCCHHHH T ss_conf 99999999999999999999999999955299999999999999999999999876--------0799986688642678 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999998514798765117999999999986688998764103577799999998757887 Q gi|254780494|r 89 EPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAG 168 (314) Q Consensus 89 E~l~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~ 168 (314) |++++++++++++++++++++|+++++.+|+++.+...++++.+++.+.+..++++.++.+|+.+|+.++++++|++.|. T Consensus 75 E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~ 154 (204) T d2qfia2 75 ESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDV 154 (204) T ss_dssp HHHHHHTTTTTTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 79999998999999999999999999972011346099999999999999999999887220021452699999999789 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 4213579999999983013444204679989999999999998899999999999530 Q gi|254780494|r 169 YLLLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQM 226 (314) Q Consensus 169 ~~s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~~~~~~~~~~~~~Ll~~ 226 (314) +.|.++++++++.++ +.+|+||++++++++++++.+++++||+.++|+|. T Consensus 155 ~~s~~vii~~~~~~~--------~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~ 204 (204) T d2qfia2 155 MMNGAILLALGLSWY--------GWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204 (204) T ss_dssp CCSSTTCCCTTSSCS--------STTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC T ss_pred HHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 987999999999993--------84032699999999999999999999999987294 No 2 >d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Probab=99.19 E-value=1.8e-10 Score=80.43 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=68.1 Q ss_pred CCCHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 099789999999997157611--510001678704676999999998889986109999999999999986548921999 Q gi|254780494|r 226 MTSPDLDSQVREALYPIVIRH--GFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLT 303 (314) Q Consensus 226 ~~~~~~~~~I~~~i~~~~~v~--~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~ 303 (314) +.|||..++|++++++.+++. ++|+ +|++++|+++++|+|+.||+++ ++.++|++.+++++++++.+|..+++ T Consensus 1 glp~e~~~~I~~~i~~~~~~~vv~vh~--lr~r~~G~~~~vd~hi~v~~~~---sv~~aH~i~~~ve~~i~~~~~~~~v~ 75 (82) T d3bypa1 1 GLPPEEVERIRAFLQERIRGRALEVHD--LKTRRAGPRSFLEFHLVVRGDT---PVEEAHRLCDELERALAQAFPGLQAT 75 (82) T ss_dssp CCCHHHHHHHHHHHHHHHTTTCSEEEE--EEEEEETTEEEEEEEEEECTTC---BHHHHHHHHHHHHHHHHHHSTTEEEE T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEE--EEEEEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 929899999999999589978030168--8756988989999999989899---89999999999999999658997799 Q ss_pred EEEEC Q ss_conf 99854 Q gi|254780494|r 304 ISFTT 308 (314) Q Consensus 304 i~F~~ 308 (314) +|.++ T Consensus 76 vHveP 80 (82) T d3bypa1 76 IHVEP 80 (82) T ss_dssp EEEEE T ss_pred EEECC T ss_conf 99588 No 3 >d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Probab=98.83 E-value=4.3e-11 Score=84.29 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=68.6 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 99789999999997157611510001678704676999999998889986109999999999999986548921999998 Q gi|254780494|r 227 TSPDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314) Q Consensus 227 ~~~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314) .|++..++|++++.+++++.++|+++. +++|+.+++|+|++||+++ ++++.|++.++++++|++.+|..+++||. T Consensus 2 lP~e~~~~I~~~i~~~~gV~~vh~lr~--r~~G~~~~vd~hi~v~~~~---sv~~aH~I~~~ie~~l~~~~~~~~v~iHv 76 (82) T d2qfia1 2 LPDEERQEIIDIVTSWPGVSGAHDLRT--RQSGPTRFIQIHLEMEDSL---PLVQAHMVADQVEQAILRRFPGSDVIIHQ 76 (82) T ss_dssp CCTTHHHHHHHHHTTSSSCSCBCCCCC--CTTSCCBCCBSCTTSTTTC---SCGGGHHHHHHHHHHTTSSSCCSSCBCCC T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEEE--EEECCCEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 298999999999971999234548999--9968909999999989999---99999999999999999768997799980 Q ss_pred ECC Q ss_conf 547 Q gi|254780494|r 307 TTQ 309 (314) Q Consensus 307 ~~~ 309 (314) ++. T Consensus 77 eP~ 79 (82) T d2qfia1 77 DPC 79 (82) T ss_dssp CCS T ss_pred CCC T ss_conf 776 No 4 >d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Probab=87.01 E-value=0.72 Score=21.31 Aligned_cols=76 Identities=14% Similarity=0.262 Sum_probs=43.1 Q ss_pred HHHHHHHHHHCCCCC---CCEEE-EEEEEE-ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 999999997157611---51000-167870-4676999999998889986109999999999999986548921999998 Q gi|254780494|r 232 DSQVREALYPIVIRH---GFLDF-YTYVTK-VGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314) Q Consensus 232 ~~~I~~~i~~~~~v~---~v~~~-~i~~~~-~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314) .+++.+++.++..=+ ++-++ -++... .|.+..+.+.+.-+.. |. .+.+++++++++++..+.-.+.|++ T Consensus 3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~c-p~-----~~~i~~~i~~al~~l~gv~~V~V~~ 76 (91) T d2cu6a1 3 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGC-PL-----HDSLGEAVRQALSRLPGVEEVEVEV 76 (91) T ss_dssp HHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSC-CS-----SCHHHHHHHHHHHTSTTCCEEEEEE T ss_pred HHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEECCCCEEEEECCCCCC-CH-----HHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 99999998368899999684214550378994264189997488897-47-----9999999999998089973289999 Q ss_pred ECCCCCC Q ss_conf 5476555 Q gi|254780494|r 307 TTQKKWA 313 (314) Q Consensus 307 ~~~~~~~ 313 (314) |.+|.|. T Consensus 77 ~~~p~W~ 83 (91) T d2cu6a1 77 TFEPPWT 83 (91) T ss_dssp CCSSCCC T ss_pred EECCCCC T ss_conf 9659988 No 5 >d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Probab=86.91 E-value=0.72 Score=21.30 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC Q ss_conf 99999999999865489219999985476555 Q gi|254780494|r 282 LDAIRHEIGNAIGGLGEERWLTISFTTQKKWA 313 (314) Q Consensus 282 ~~~i~~~i~~~l~~~~~~~~~~i~F~~~~~~~ 313 (314) .+.+++++++++++..+...++|+++.+|.|. T Consensus 57 ~~~i~~~i~~al~~~~gV~~v~V~i~~~p~W~ 88 (102) T d1uwda_ 57 AGMILSDAEEAIKKIEGVNNVEVELTFDPPWT 88 (102) T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEECCSSCCC T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC T ss_conf 79999999999982899760899999629999 No 6 >d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Probab=74.72 E-value=0.00091 Score=39.15 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=71.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999866889987641035777999999987578874213579999999983013444204679989999999999998 Q gi|254780494|r 132 CVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILPS 211 (314) Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~~ 211 (314) .++.++|..+...+.-.+--.+|..+.+|+.|...|.+.+..+..+.-.+.-.+...+.++..-..++++++.+++++.. T Consensus 10 ~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~ 89 (204) T d2qfia2 10 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGS 89 (204) T ss_dssp HHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTTTTTSSS T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999552999999999999999999999998760799986688642678799999989999999 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 89999999999953099 Q gi|254780494|r 212 AICTMKSATFEIFQMTS 228 (314) Q Consensus 212 ~~~~~~~~~~~Ll~~~~ 228 (314) ++.++.+++..+....+ T Consensus 90 ~~~~~~~si~~l~~~~~ 106 (204) T d2qfia2 90 ALFLFLTGIQHLISPTP 106 (204) T ss_dssp TTGGGSSCTTSSTTTSS T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999972011 No 7 >d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=53.10 E-value=5.2 Score=16.02 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 789999999997157611510001678704676999999998889986-1099999999999999865489219999985 Q gi|254780494|r 229 PDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPI-KRIASLDAIRHEIGNAIGGLGEERWLTISFT 307 (314) Q Consensus 229 ~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~-~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~ 307 (314) .++..+|++-+..-....++....+ .++.....+.+|..=|.- -+ +.-++++.+++.+++.+.-..+++.+.++-. T Consensus 6 ~~f~a~Ire~l~k~l~~Agis~ieI--~Rt~~~i~I~I~tarPGi-vIGrkG~~I~~L~~~l~k~~~~~~~~i~lnae~I 82 (92) T d1wh9a_ 6 SGFKAELNEFLTRELAEDGYSGVEV--RVTPTRTEIIILATRTQN-VLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKV 82 (92) T ss_dssp CSHHHHHHHHHHHHTTTTTEEEEEE--EECSSCEEEEEEESCHHH-HHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEEC T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE--EECCCEEEEEEEECCCCE-EECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 5289999999999887687355999--987990899999689860-5222754399999999999789997289998700 Q ss_pred CCC Q ss_conf 476 Q gi|254780494|r 308 TQK 310 (314) Q Consensus 308 ~~~ 310 (314) .++ T Consensus 83 a~r 85 (92) T d1wh9a_ 83 ATR 85 (92) T ss_dssp CCS T ss_pred CCC T ss_conf 026 No 8 >d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]} Probab=45.97 E-value=5.4 Score=15.89 Aligned_cols=69 Identities=9% Similarity=0.085 Sum_probs=30.1 Q ss_pred HCCCHHHHHHHHHHHH-HCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 3099789999999997-1576115100016787046769999999988899861099999999999999865489 Q gi|254780494|r 225 QMTSPDLDSQVREALY-PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGE 298 (314) Q Consensus 225 ~~~~~~~~~~I~~~i~-~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~ 298 (314) |++|.++.+.|.+-++ ++.++.+++.++...+..|. ..+.+.++.+.+... ...++++++.+...+.++ T Consensus 14 Gaspe~ve~~Vt~plE~~l~~v~gi~~i~S~S~~~G~---~~i~v~f~~~~d~~~--a~~~v~~~v~~~~~~LP~ 83 (97) T d1iwga1 14 GADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGT---VQITLTFESGTDADI--AQVQVQNKLQLAMPLLPQ 83 (97) T ss_dssp TCCHHHHHTTTHHHHHHHCCCCSSCCEEEEEEETTTE---EEEEEECCTTCCHHH--HHHHHTTSGGGTGGGSCH T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC---EEEEEEEECCCCHHH--HHHHHHHHHHHHHHCCCC T ss_conf 9999999999969999997389991799999826894---899999947989899--999999999999860996 No 9 >d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=41.09 E-value=8 Score=14.87 Aligned_cols=78 Identities=6% Similarity=-0.002 Sum_probs=52.3 Q ss_pred CCH-HHHHHHHHHHHHCCCCCCCEEEEEEEEEEC-CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC---CCEE Q ss_conf 997-899999999971576115100016787046-76999999998889986109999999999999986548---9219 Q gi|254780494|r 227 TSP-DLDSQVREALYPIVIRHGFLDFYTYVTKVG-RSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLG---EERW 301 (314) Q Consensus 227 ~~~-~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G-~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~---~~~~ 301 (314) +++ ...+-+.+++.+.+.+..-....++....| ..+..++..-+++. . -....+++..++.+++++.. |-.+ T Consensus 17 ~d~~~v~~il~~~~~~~~~v~~~p~p~v~~~~~~~s~i~~~v~~w~~~~-~--~~~~~~~l~~~I~~~l~~~gI~ip~P~ 93 (101) T d2vv5a2 17 SDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG-D--LQNVYWDVLERIKREFDAAGISFPYPQ 93 (101) T ss_dssp SCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETT-T--HHHHHHHHHHHHHHHHHHHTCCCCCCE T ss_pred CCHHHHHHHHHHHHHHCHHHHCCCCCHHHCCCCCCCEEEEEEEEEECCH-H--HHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9899999999999984833303567411102589844899999983526-9--999999999999999998697178886 Q ss_pred EEEEEE Q ss_conf 999985 Q gi|254780494|r 302 LTISFT 307 (314) Q Consensus 302 ~~i~F~ 307 (314) -+|++. T Consensus 94 ~~v~~~ 99 (101) T d2vv5a2 94 MDVNFK 99 (101) T ss_dssp EEEEEE T ss_pred EEEEEE T ss_conf 799986 No 10 >d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]} Probab=30.92 E-value=12 Score=13.86 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 204568999999999999999999999 Q gi|254780494|r 83 FGFWHFEPMVLAFNSVILICVALYEFL 109 (314) Q Consensus 83 ~G~~r~E~l~~l~~~~~l~~~~~~i~~ 109 (314) -|-.++|.+...+-.++++++++.... T Consensus 57 ~~n~~lEi~WtiIP~iil~~iav~s~~ 83 (91) T d1fftb2 57 SHSNKVEAVVWTVPILIIIFLAVLTWK 83 (91) T ss_dssp CCCSHHHHHTTHHHHHHHHHHHHHHHH T ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHHH T ss_conf 679641146899899999999999998 No 11 >d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]} Probab=25.12 E-value=15 Score=13.23 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHHHHCCC--EEEEEEEE Q ss_conf 999999999998654892--19999985 Q gi|254780494|r 282 LDAIRHEIGNAIGGLGEE--RWLTISFT 307 (314) Q Consensus 282 ~~~i~~~i~~~l~~~~~~--~~~~i~F~ 307 (314) .+.+++|+.++++..||+ .++.|.+. T Consensus 18 ~~aL~~EL~kRl~~~fpD~~~~v~Vr~~ 45 (81) T d1ghha_ 18 IDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81) T ss_dssp HHHHHHHHHHHHHHHCSSSCCEEEEEEE T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 9999999999887358997540798655 No 12 >d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]} Probab=24.92 E-value=15 Score=13.21 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=22.3 Q ss_pred EEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 0167870467699999999888998610999999999999998654892199999854765 Q gi|254780494|r 251 FYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTTQKK 311 (314) Q Consensus 251 ~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~~~~ 311 (314) .++|-. .|+...+.+- .++ +.+| +++.|...+--.|.+|+-|+=-+ T Consensus 41 ~~LWRv-~G~~~nisIf-dv~------s~de-------Lh~iL~~LPL~p~m~ieVtpL~~ 86 (96) T d1mlia_ 41 RHLWRI-AGHYANYSVF-DVP------SVEA-------LHDTLMQLPLFPYMDIEVDGLCR 86 (96) T ss_pred EEEEEE-CCCCEEEEEE-ECC------CHHH-------HHHHHHCCCCCCCCCCEEEECCC T ss_conf 799996-4774278999-769------8799-------99999719996411446777466 Done!