RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62] (314 letters) >3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202) Length = 202 Score = 60.2 bits (145), Expect = 3e-10 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 16/216 (7%) Query: 11 EESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVS 70 + M + + + T S SI+ S ++ G + +LLV + Sbjct: 2 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSL---- 57 Query: 71 KVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKAVIY 130 + + FG E + S+ + AL+ FL I ++IS + VI Sbjct: 58 ----QPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIV 113 Query: 131 SCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYD 190 + VA +++ ++ R +S + D + + A+++A + Sbjct: 114 TIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW-------- 165 Query: 191 WIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQM 226 + D++ + I ++IL SA+ A + Sbjct: 166 YGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 201 >3k3f_A UREA transporter; membrane protein, channel, transport protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Desulfovibrio vulgaris str} PDB: 3k3g_A (A:1-161) Length = 161 Score = 25.9 bits (57), Expect = 6.3 Identities = 7/36 (19%), Positives = 11/36 (30%) Query: 156 FIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYDW 191 F + S + +L + L A LL Sbjct: 41 FAGIFYNSTTLGVCAVLGTAASTLTAQLLGVDKPLV 76 >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} (A:1-229) Length = 229 Score = 25.8 bits (56), Expect = 7.7 Identities = 4/98 (4%), Positives = 21/98 (21%), Gaps = 2/98 (2%) Query: 127 AVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRD 186 + ++ + + + ++G + F+ + Sbjct: 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD- 87 Query: 187 SAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIF 224 + + ++L + + S Sbjct: 88 -RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.330 0.141 0.428 Gapped Lambda K H 0.267 0.0624 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,398,581 Number of extensions: 105712 Number of successful extensions: 255 Number of sequences better than 10.0: 1 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 11 Length of query: 314 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 226 Effective length of database: 1,981,209 Effective search space: 447753234 Effective search space used: 447753234 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 55 (25.2 bits)