RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780494|ref|YP_003064907.1| cation diffusion facilitator
family transporter, putative [Candidatus Liberibacter asiaticus str.
psy62]
         (314 letters)



>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc
           transporter, cell inner membrane, cell membrane, ION
           transport, iron transport; 2.90A {Escherichia coli k-12}
           PDB: 2qfi_A (A:1-202)
          Length = 202

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 16/216 (7%)

Query: 11  EESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVS 70
                  +  M   +  + +     T S SI+     S ++ G +  +LLV +       
Sbjct: 2   VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSL---- 57

Query: 71  KVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKAVIY 130
               +  +    FG    E +     S+ +   AL+ FL  I ++IS     +    VI 
Sbjct: 58  ----QPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIV 113

Query: 131 SCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYD 190
           + VA    +++  ++    R  +S  +  D   +     +  A+++A   +         
Sbjct: 114 TIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW-------- 165

Query: 191 WIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQM 226
           +     D++  + I ++IL SA+     A   +   
Sbjct: 166 YGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 201


>3k3f_A UREA transporter; membrane protein, channel, transport
           protein, structural genomics, PSI-2, protein structure
           initiative; 2.30A {Desulfovibrio vulgaris str} PDB:
           3k3g_A (A:1-161)
          Length = 161

 Score = 25.9 bits (57), Expect = 6.3
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 156 FIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYDW 191
           F  +   S  +    +L    + L A LL       
Sbjct: 41  FAGIFYNSTTLGVCAVLGTAASTLTAQLLGVDKPLV 76


>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner
           membrane, major facilitator superfamily, secondary
           active membrane transporter; 3.30A {Escherichia coli}
           (A:1-229)
          Length = 229

 Score = 25.8 bits (56), Expect = 7.7
 Identities = 4/98 (4%), Positives = 21/98 (21%), Gaps = 2/98 (2%)

Query: 127 AVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRD 186
             +          ++          +     +     + ++G  +      F+   +   
Sbjct: 29  IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD- 87

Query: 187 SAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIF 224
              +  +     ++L    +  +        S      
Sbjct: 88  -RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,398,581
Number of extensions: 105712
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 11
Length of query: 314
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 226
Effective length of database: 1,981,209
Effective search space: 447753234
Effective search space used: 447753234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.2 bits)