RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780494|ref|YP_003064907.1| cation diffusion facilitator
family transporter, putative [Candidatus Liberibacter asiaticus str.
psy62]
         (314 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 58.6 bits (141), Expect = 6e-10
 Identities = 37/216 (17%), Positives = 79/216 (36%), Gaps = 16/216 (7%)

Query: 8   SKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIAR 67
            +        +  M   +  + +     T S SI+     S ++ G +  +LLV +    
Sbjct: 2   GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYS-- 59

Query: 68  DVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKA 127
                  +  +    FG    E +     S+ +   AL+ FL  I ++IS     +    
Sbjct: 60  ------LQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVG 113

Query: 128 VIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDS 187
           VI + VA    +++  ++    R  +S  +  D   +     +  A+++A   +      
Sbjct: 114 VIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW----- 168

Query: 188 AYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEI 223
              +     D++  + I ++IL SA+     A   +
Sbjct: 169 ---YGWHRADALFALGIGIYILYSALRMGYEAVQSL 201


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 26.2 bits (58), Expect = 3.8
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 21/81 (25%)

Query: 98  VILICVALYEFLISILNIISGGHDINFEKAVIYSCVASF-------ICLM---------- 140
           +  I V   E ++ + ++   G  I   K  +Y+            + L           
Sbjct: 133 IKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLK 192

Query: 141 ----MGVYENRCNREIKSDFI 157
               +G+   R   +   D +
Sbjct: 193 DPLYIGLRHKRIRGQAYDDLL 213


>d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 388

 Score = 25.5 bits (55), Expect = 6.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 240 YPIVIRHGFLDF 251
            PIV+ HGF  +
Sbjct: 8   APIVLLHGFTGW 19


>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase)
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 228

 Score = 24.9 bits (54), Expect = 8.7
 Identities = 11/102 (10%), Positives = 29/102 (28%), Gaps = 9/102 (8%)

Query: 68  DVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKA 127
              +V     ++         E +       +LI     + + +   ++       F + 
Sbjct: 108 HYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVE---DIIDTGKTLVK------FCEY 158

Query: 128 VIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGY 169
           +    + +     + +         K+DF+        V GY
Sbjct: 159 LKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGY 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,195,632
Number of extensions: 56488
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 11
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)