BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780494|ref|YP_003064907.1| cation diffusion facilitator
family transporter, putative [Candidatus Liberibacter asiaticus str.
psy62]
         (314 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 314

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/314 (100%), Positives = 314/314 (100%)

Query: 1   MQNYKARSKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLL 60
           MQNYKARSKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLL
Sbjct: 1   MQNYKARSKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLL 60

Query: 61  VAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGH 120
           VAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGH
Sbjct: 61  VAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGH 120

Query: 121 DINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLC 180
           DINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLC
Sbjct: 121 DINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLC 180

Query: 181 AMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSPDLDSQVREALY 240
           AMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSPDLDSQVREALY
Sbjct: 181 AMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSPDLDSQVREALY 240

Query: 241 PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER 300
           PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER
Sbjct: 241 PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER 300

Query: 301 WLTISFTTQKKWAI 314
           WLTISFTTQKKWAI
Sbjct: 301 WLTISFTTQKKWAI 314


>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 395

 Score = 25.8 bits (55), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 27  SVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKL 64
           S N+ I    N SS+  + F  Y +AG+  +SL V  L
Sbjct: 103 SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSL 140


>gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 311

 Score = 23.9 bits (50), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 45  GFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVA 104
           GF S L  G+ ++  ++  +I+    K  YR  +    FG    E +      +++  +A
Sbjct: 35  GFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIA 94

Query: 105 L 105
           L
Sbjct: 95  L 95


>gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 101

 Score = 23.5 bits (49), Expect = 4.7,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 137 ICLMMGVYENRCNREIKSD 155
           IC ++ + ENR N + K+D
Sbjct: 65  ICALIKLLENRSNHQTKND 83


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.141    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,442
Number of Sequences: 1233
Number of extensions: 6974
Number of successful extensions: 30
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 8
length of query: 314
length of database: 328,796
effective HSP length: 74
effective length of query: 240
effective length of database: 237,554
effective search space: 57012960
effective search space used: 57012960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 38 (19.2 bits)