Query gi|254780495|ref|YP_003064908.1| superoxide dismutase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 109 out of 2087
Neff 6.6
Searched_HMMs 39220
Date Sun May 29 23:22:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780495.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10925 superoxide dismutase; 100.0 0 0 524.4 19.6 195 1-199 1-206 (206)
2 COG0605 SodA Superoxide dismut 100.0 0 0 518.1 20.1 200 1-201 2-204 (204)
3 PRK10543 superoxide dismutase; 100.0 0 0 519.3 18.9 192 1-197 1-193 (193)
4 PTZ00078 Fe-superoxide dismuta 100.0 0 0 514.5 20.0 195 1-200 1-197 (198)
5 KOG0876 consensus 100.0 0 0 438.8 17.4 198 2-201 27-232 (234)
6 pfam02777 Sod_Fe_C Iron/mangan 100.0 7E-45 0 284.8 9.8 103 91-194 1-105 (105)
7 pfam00081 Sod_Fe_N Iron/mangan 100.0 1.9E-30 4.9E-35 199.8 7.5 82 2-85 1-82 (82)
8 KOG2564 consensus 57.5 7.2 0.00018 19.4 2.0 83 106-192 124-216 (343)
9 pfam05416 Peptidase_C37 Southa 51.9 8.9 0.00023 18.9 1.7 21 121-143 376-396 (535)
10 cd03072 PDI_b'_ERp44 PDIb' fam 39.8 21 0.00055 16.6 2.1 75 104-182 28-104 (111)
11 COG3207 DIT1 Pyoverdine/dityro 37.6 15 0.00038 17.5 1.0 42 103-144 214-261 (330)
12 TIGR02963 xanthine_xdhA xanthi 37.3 25 0.00064 16.2 2.2 83 90-180 294-397 (515)
13 TIGR02102 pullulan_Gpos pullul 30.3 36 0.00092 15.3 2.0 18 69-86 741-758 (1164)
14 pfam09347 DUF1989 Domain of un 29.6 42 0.0011 14.9 2.3 15 106-120 108-122 (167)
15 KOG0394 consensus 29.2 35 0.00088 15.4 1.8 44 100-143 92-141 (210)
16 TIGR02965 xanthine_xdhB xanthi 29.2 24 0.00061 16.3 0.9 42 122-163 653-698 (761)
17 pfam02868 Peptidase_M4_C Therm 28.1 47 0.0012 14.6 4.6 56 71-126 81-140 (156)
18 TIGR03424 urea_degr_1 urea car 28.0 44 0.0011 14.8 2.1 17 106-122 113-129 (198)
19 pfam09249 tRNA_NucTransf2 tRNA 25.8 52 0.0013 14.4 5.0 53 93-161 25-77 (114)
20 COG0272 Lig NAD-dependent DNA 22.7 59 0.0015 14.0 2.9 39 91-129 517-555 (667)
21 TIGR03425 urea_degr_2 urea car 20.1 67 0.0017 13.7 2.2 13 171-184 215-227 (233)
No 1
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=0 Score=524.44 Aligned_cols=195 Identities=45% Similarity=0.840 Sum_probs=181.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Q ss_conf 987799999986555864699999998732887899889998500-0233200457897641----01114554332225
Q gi|254780495|r 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASD-AEMLHLSLEEIIIKSH----GSNAGLFNNASQYY 75 (205)
Q Consensus 1 m~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~-~~~~~~~l~~~~~~~~----~~~~~~~nnagg~~ 75 (205)
|+|+||||||+|+||||+||++||++||+||||+||++||+++++ ++..+.++++++.+.. ..+..++||||||+
T Consensus 1 M~f~Lp~LpY~~~aLeP~is~~t~~~Hh~kHh~~YV~~lN~~l~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nnagg~~ 80 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHA 80 (206)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 97758999998341444169999999999999999988999986047776299999998785072777789987236888
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCC--
Q ss_conf 689998507888887640689999997430899999999999862014343100103410123443147675400147--
Q gi|254780495|r 76 NHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGA-- 153 (205)
Q Consensus 76 nH~lff~~l~p~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~~~~L~i~~~~n~~~p~~~~~-- 153 (205)
||+|||++|+|+ +.|++.|+++|+++|||+|+||++|+++|+++|||||||||.++++|.|++|+||++|++.+.
T Consensus 81 NH~~fw~~l~~~---~~~~g~L~~~I~~~FGS~d~fk~~F~~aa~~~fGSGW~WLv~~~~kL~i~~t~n~d~Pl~~~~~~ 157 (206)
T PRK10925 81 NHSLFWKGLKKG---TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAIS 157 (206)
T ss_pred HHHHHHHCCCCC---CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCCC
T ss_conf 779885047899---99985999999998589999999999998537876279999759967898537899854355445
Q ss_pred ----CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf ----8535643768776987517749999999861359899999999999
Q gi|254780495|r 154 ----IPILGIDVWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYETAM 199 (205)
Q Consensus 154 ----~PlL~iDvWEHAYylDY~n~r~~Yi~~f~~n~inW~~v~~r~~~a~ 199 (205)
+||||||||||||||||||+|++||++| |++|||++|++||++|.
T Consensus 158 ~~~~~PiL~iDvWEHAYYldY~n~R~~Yi~~~-~~~INW~~v~~r~~~Ak 206 (206)
T PRK10925 158 GASGFPILGLDVWEHAYYLKFQNRRPDYIKEF-WNVVNWDEAAARFAAKK 206 (206)
T ss_pred CCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHH-HHHCCHHHHHHHHHHCC
T ss_conf 66785367640667888988522579999999-97609999999998568
No 2
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=518.09 Aligned_cols=200 Identities=50% Similarity=0.913 Sum_probs=190.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 98779999998655586469999999873288789988999850002--3320045789764101114554332225689
Q gi|254780495|r 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAE--MLHLSLEEIIIKSHGSNAGLFNNASQYYNHN 78 (205)
Q Consensus 1 m~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~~~--~~~~~l~~~~~~~~~~~~~~~nnagg~~nH~ 78 (205)
|+|+||+|||+|+||||+||++||++||+||||+||+++|+++++++ +++.++++++.+..+....++||+|||+||+
T Consensus 2 ~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~nn~~gh~NH~ 81 (204)
T COG0605 2 MAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPAALFNNAGGHWNHS 81 (204)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHH
T ss_conf 87737999987344665468999999999899999977999976105430457799999887415488874100365389
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 9985078888876406899999974308999999999998620143431001034-101234431476754001478535
Q gi|254780495|r 79 LFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPIL 157 (205)
Q Consensus 79 lff~~l~p~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~-~~~L~i~~~~n~~~p~~~~~~PlL 157 (205)
|||++|+|++++++|+|.|+++|+++|||+|+||++|.++|.++|||||+|||++ .++|.|++|+||++|++.+.+|||
T Consensus 82 ~fw~~l~p~~gg~~p~g~l~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~~kL~i~~t~n~~~p~~~~~~PiL 161 (204)
T COG0605 82 LFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPDGKLEIVSTYNQDTPLMWGSVPLL 161 (204)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEE
T ss_conf 99800488889998888999999988469999999999998647778659999879995788850688986657887557
Q ss_pred EEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 64376877698751774999999986135989999999999973
Q gi|254780495|r 158 GIDVWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYETAMLA 201 (205)
Q Consensus 158 ~iDvWEHAYylDY~n~r~~Yi~~f~~n~inW~~v~~r~~~a~~~ 201 (205)
||||||||||+||||+|++||++| ||+|||++|++||++|+++
T Consensus 162 ~lDvWEHAYYldY~N~R~~Yv~af-wnvVNW~~V~~r~~~a~~~ 204 (204)
T COG0605 162 GLDVWEHAYYLDYGNRRPDYVEAF-WNVVNWDEVEERFEAAKKE 204 (204)
T ss_pred EECCHHHHHHHHHCCCCHHHHHHH-HHHCCHHHHHHHHHHHHHC
T ss_conf 863048787987445767999998-7600889999999999719
No 3
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=0 Score=519.28 Aligned_cols=192 Identities=46% Similarity=0.866 Sum_probs=182.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 98779999998655586469999999873288789988999850002332004578976410111455433222568999
Q gi|254780495|r 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLF 80 (205)
Q Consensus 1 m~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~~~~~~~~l~~~~~~~~~~~~~~~nnagg~~nH~lf 80 (205)
|+|+||||||+|+||||+||++||++||+||||+||++||+++++++.++.++++++... +..+|||+||++||+||
T Consensus 1 M~~~Lp~LpY~y~aLeP~Is~~t~~~Hh~kHh~~YV~~LN~~~~~~~~~~~~l~~ii~~~---~~~~~nnag~~~NH~lf 77 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS---EGGVFNNAAQVWNHTFY 77 (193)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 987489999983525320499999999999999999999998654511008999999850---47776313899999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 85078888876406899999974308999999999998620143431001034-10123443147675400147853564
Q gi|254780495|r 81 WACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGI 159 (205)
Q Consensus 81 f~~l~p~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~-~~~L~i~~~~n~~~p~~~~~~PlL~i 159 (205)
|++|+|++ +++|++.|+++|+++|||+|+||++|+++|+++||||||||+.+ +|+|.|++|+||++|++.+.+|||||
T Consensus 78 w~~L~p~~-~~~P~g~L~~aI~~~FGS~e~fk~~f~~~a~~~fGSGW~wLv~~~~g~L~i~~t~n~~~p~~~~~~PlL~l 156 (193)
T PRK10543 78 WNCLAPNA-GGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNADGKLAIVSTSNAGTPLTTDATPLLTV 156 (193)
T ss_pred HHHCCCCC-CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 96148889-99988899999998838999999999999845788758999998999888883357789877897158986
Q ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 37687769875177499999998613598999999999
Q gi|254780495|r 160 DVWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYET 197 (205)
Q Consensus 160 DvWEHAYylDY~n~r~~Yi~~f~~n~inW~~v~~r~~~ 197 (205)
||||||||+||||+|++||++| |++|||++||+||.+
T Consensus 157 DvWEHAYyldY~n~r~~Yi~~~-w~~inW~~ve~r~~a 193 (193)
T PRK10543 157 DVWEHAYYIDYRNARPGYLEHF-WALVNWEFVAKNLAA 193 (193)
T ss_pred EHHHHHHHHHHCCCHHHHHHHH-HHHCCHHHHHHHHCC
T ss_conf 3445776998744689999999-986299999976249
No 4
>PTZ00078 Fe-superoxide dismutase; Provisional
Probab=100.00 E-value=0 Score=514.51 Aligned_cols=195 Identities=42% Similarity=0.822 Sum_probs=184.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 98779999998655586469999999873288789988999850002332004578976410111455433222568999
Q gi|254780495|r 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLF 80 (205)
Q Consensus 1 m~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~~~~~~~~l~~~~~~~~~~~~~~~nnagg~~nH~lf 80 (205)
|+|+||||||+|+||||+||++||++||+||||+||+++|+++++++.++.++++++... ...+|||+||++||+||
T Consensus 1 m~~~Lp~LpY~~~aLeP~iS~~t~~~Hh~kHh~~YV~~lN~~~~~~~~~~~~l~~ii~~~---~~~~fnnag~~~NH~~y 77 (198)
T PTZ00078 1 MAFKLPPLPYGLKDLVPHISEETLTFHYTKHHAGYVNKLNGLIKGTPLETKSLEDIVKTE---SGAVFNNAAQIWNHTFY 77 (198)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH---HHHHHHCCHHHHHHHHH
T ss_conf 976589998983425541699999999999999999999998511677508999998642---04555331388889999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC-CCEEEEEECCCCCCCCCCCC-CCEEE
Q ss_conf 85078888876406899999974308999999999998620143431001034-10123443147675400147-85356
Q gi|254780495|r 81 WACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVK-NGKLEISKTQNAENPLINGA-IPILG 158 (205)
Q Consensus 81 f~~l~p~~~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~-~~~L~i~~~~n~~~p~~~~~-~PlL~ 158 (205)
|++|+|+ +++.|++.|+++|+++|||+|+|+++|+++|.++|||||||||.+ +++|.|++|.|+++|++.+. +||||
T Consensus 78 w~~l~p~-~~~~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~~~~l~i~~t~~~~~p~~~~~~~PlL~ 156 (198)
T PTZ00078 78 WHSMGPN-CGGEPRGTIRKKIDEKFGSFDNFKKEFSNVLVGHFGSGWGWLVLKNDGTPEIVQTHDAGNPLKDNTGTPLLA 156 (198)
T ss_pred HHHCCCC-CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 9863878-999989899999998847999999999999853376628999990899888884467689754577733787
Q ss_pred EEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 437687769875177499999998613598999999999997
Q gi|254780495|r 159 IDVWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYETAML 200 (205)
Q Consensus 159 iDvWEHAYylDY~n~r~~Yi~~f~~n~inW~~v~~r~~~a~~ 200 (205)
|||||||||+||||+|++||++| |++|||++|++||++|++
T Consensus 157 iDvWEHAYyldY~n~R~~Yi~~~-~~~INW~~v~~r~~~a~k 197 (198)
T PTZ00078 157 CDVWEHAYYIDYRNDRASYVNAW-WNLVNWDFANENLEKPFK 197 (198)
T ss_pred EEHHHHHHHHHHCCCHHHHHHHH-HHHCCHHHHHHHHHHHHC
T ss_conf 41325676998745689999999-986299999999999864
No 5
>KOG0876 consensus
Probab=100.00 E-value=0 Score=438.77 Aligned_cols=198 Identities=43% Similarity=0.751 Sum_probs=170.8
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHHHCCCH-HHHHHHHHHHHHHH
Q ss_conf 8779999998655586469999999873288789988999850002332004578-976410111-45543322256899
Q gi|254780495|r 2 DFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEI-IIKSHGSNA-GLFNNASQYYNHNL 79 (205)
Q Consensus 2 ~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~~~~~~~~l~~~-~~~~~~~~~-~~~nnagg~~nH~l 79 (205)
.++||+|||+|++|||+||+++|++||+|||++||+++|+++++++.+...+... +........ ..||++|+.+||+|
T Consensus 27 ~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~t~~~~~~a~~Fn~~~~~~Nh~f 106 (234)
T KOG0876 27 KATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSLTAIAPQPAPKFNGAGHIYNHSF 106 (234)
T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCHH
T ss_conf 20179998772216553338888888998999999789998721443123412466674048454320487330125412
Q ss_pred HHHHCCCCCCCCCHHH-HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCC--CEEEEEECCCCCCCCCCC---C
Q ss_conf 9850788888764068-999999743089999999999986201434310010341--012344314767540014---7
Q gi|254780495|r 80 FWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVKN--GKLEISKTQNAENPLING---A 153 (205)
Q Consensus 80 ff~~l~p~~~~~~p~~-~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~~--~~L~i~~~~n~~~p~~~~---~ 153 (205)
||++|.|+++ ++|++ .|.++|+++|||+++|+++|.+++.++|||||+|||++. ++|.|++|+||.+|+..+ .
T Consensus 107 Fw~~l~p~gg-~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~~T~Na~~P~~~~t~~~ 185 (234)
T KOG0876 107 FWENLAPPGG-GKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFILTTYNAGDPLVWTTGQL 185 (234)
T ss_pred HHHHCCCCCC-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCC
T ss_conf 5653268888-998618899999874057999999999987763278548999817778478982378889755467770
Q ss_pred CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 853564376877698751774999999986135989999999999973
Q gi|254780495|r 154 IPILGIDVWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYETAMLA 201 (205)
Q Consensus 154 ~PlL~iDvWEHAYylDY~n~r~~Yi~~f~~n~inW~~v~~r~~~a~~~ 201 (205)
+|||||||||||||+||||+|++||++| |++|||++|++||+++.+.
T Consensus 186 vPLl~IDvWeHAYyldY~n~R~~Yi~~~-wd~inW~~v~~R~~~~k~~ 232 (234)
T KOG0876 186 VPLLGIDVWEHAYYLDYGNVRAEYIKAI-WDVINWKVVSERFEAAKIQ 232 (234)
T ss_pred CCEEEEECCHHHHHHHHCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHC
T ss_conf 1057873114676877456668999999-9871679999999876640
No 6
>pfam02777 Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain. superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Probab=100.00 E-value=7e-45 Score=284.80 Aligned_cols=103 Identities=51% Similarity=1.034 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 6406899999974308999999999998620143431001034--10123443147675400147853564376877698
Q gi|254780495|r 91 GKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVK--NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYL 168 (205)
Q Consensus 91 ~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~--~~~L~i~~~~n~~~p~~~~~~PlL~iDvWEHAYyl 168 (205)
|+|+|.|+++|+++|||+|+||++|+++|+++||||||||+++ +++|.|++|.||++|++.+.+|||||||||||||+
T Consensus 1 G~P~g~L~~~I~~~FGS~d~fk~~f~~~A~~~~GsGWvwLv~d~~~~~L~i~~~~~~~~p~~~~~~PlL~lDvWEHAYyl 80 (105)
T pfam02777 1 GEPTGELAEAIDEDFGSFDKFKEEFTAAAAGLFGSGWAWLVYDPESGKLRIVSTPNQDNPLTTGLTPLLTLDVWEHAYYL 80 (105)
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHH
T ss_conf 99877999999988389999999999999857787179999978999698997578889867798779986413566599
Q ss_pred HHCCCHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 75177499999998613598999999
Q gi|254780495|r 169 DFKYRRAHYIESFITNLVNWEYVCER 194 (205)
Q Consensus 169 DY~n~r~~Yi~~f~~n~inW~~v~~r 194 (205)
||+|+|++||++| ||+|||++||+|
T Consensus 81 dy~n~r~~Yi~~~-~~~inW~~v~~R 105 (105)
T pfam02777 81 DYQNRRPDYLKAF-WNVVNWDEVAKR 105 (105)
T ss_pred HHCCCHHHHHHHH-HHHCCHHHHHCC
T ss_conf 8765789999999-986197877368
No 7
>pfam00081 Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain. superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. N-terminal domain is a long alpha antiparallel hairpin. A small fragment of YTRE_LEPBI matches well - sequencing error?
Probab=99.96 E-value=1.9e-30 Score=199.81 Aligned_cols=82 Identities=43% Similarity=0.764 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87799999986555864699999998732887899889998500023320045789764101114554332225689998
Q gi|254780495|r 2 DFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLFW 81 (205)
Q Consensus 2 ~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~~~~~~~~l~~~~~~~~~~~~~~~nnagg~~nH~lff 81 (205)
.|+||||||+|+||||+||++||++||+|||++||+++|+++++++....++++++.+ ..+..+||||||||||+|||
T Consensus 1 kf~Lp~LpY~y~aLeP~Is~~tm~~Hh~kHh~~YV~~lN~~l~~~~~~~~~~~~~~~~--~~~~~v~nNagg~~NH~lfW 78 (82)
T pfam00081 1 KYELPDLPYDYDALEPHISKETMEIHHGKHHQTYVNNLNAALEGLEEARKKLEEIILK--ALLGALFNNGGGHWNHSFFW 78 (82)
T ss_pred CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998663413338999999999999999999999997317641687799999--98999887102798899998
Q ss_pred HHCC
Q ss_conf 5078
Q gi|254780495|r 82 ACMK 85 (205)
Q Consensus 82 ~~l~ 85 (205)
++|+
T Consensus 79 ~~ms 82 (82)
T pfam00081 79 KNLS 82 (82)
T ss_pred HHCC
T ss_conf 7637
No 8
>KOG2564 consensus
Probab=57.46 E-value=7.2 Score=19.42 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CEEEEECC--CCEEEEEECCCCCCCCCCCCCCEEEEEHHHHH------HHHHHCCCHH
Q ss_conf 89999999999986201434--31001034--10123443147675400147853564376877------6987517749
Q gi|254780495|r 106 GSFEKFKSDLITAASTQFGS--GWGWLSVK--NGKLEISKTQNAENPLINGAIPILGIDVWEHA------YYLDFKYRRA 175 (205)
Q Consensus 106 GS~d~fk~~f~~~A~s~~Gs--GWvwL~~~--~~~L~i~~~~n~~~p~~~~~~PlL~iDvWEHA------YylDY~n~r~ 175 (205)
=|.|.+.++|.+.-..+||+ -=+.|+=- +|.+.+-+..+...|- +.-|.+|||=|-+ .+--|--.|+
T Consensus 124 lS~eT~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lps---l~Gl~viDVVEgtAmeAL~~m~~fL~~rP 200 (343)
T KOG2564 124 LSLETMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPS---LAGLVVIDVVEGTAMEALNSMQHFLRNRP 200 (343)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCHH---HHCEEEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 278888889999999983568986699842666233230656522223---30638998752579999887788875598
Q ss_pred HHHHHHHHHCCCHHHHH
Q ss_conf 99999986135989999
Q gi|254780495|r 176 HYIESFITNLVNWEYVC 192 (205)
Q Consensus 176 ~Yi~~f~~n~inW~~v~ 192 (205)
++.+. +.|.|.|.+-.
T Consensus 201 ~~F~S-i~~Ai~W~v~s 216 (343)
T KOG2564 201 KSFKS-IEDAIEWHVRS 216 (343)
T ss_pred CCCCC-HHHHHHHHHCC
T ss_conf 52223-46677888602
No 9
>pfam05416 Peptidase_C37 Southampton virus-type processing peptidase. Corresponds to Merops family C37. Norwalk-like viruses (NLVs), including the Southampton virus, cause acute non-bacterial gastroenteritis in humans. The NLV genome encodes three open reading frames (ORFs). ORF1 encodes a polyprotein, which is processed by the viral protease into six proteins.
Probab=51.88 E-value=8.9 Score=18.87 Aligned_cols=21 Identities=43% Similarity=0.879 Sum_probs=13.3
Q ss_pred CCCCCCEEEEECCCCEEEEEECC
Q ss_conf 01434310010341012344314
Q gi|254780495|r 121 TQFGSGWGWLSVKNGKLEISKTQ 143 (205)
Q Consensus 121 s~~GsGWvwL~~~~~~L~i~~~~ 143 (205)
--|||||.+.| +..|.|.+|.
T Consensus 376 v~fGsGWgfWV--S~tlfITtTH 396 (535)
T pfam05416 376 VKFGSGWGFWV--SPTLFITSTH 396 (535)
T ss_pred EECCCCEEEEE--CCEEEEEEEE
T ss_conf 53467336776--4607887643
No 10
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=39.84 E-value=21 Score=16.60 Aligned_cols=75 Identities=17% Similarity=0.380 Sum_probs=36.9
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHH-HCC-CHHHHHHHH
Q ss_conf 308999999999998620143431001034101234431476754001478535643768776987-517-749999999
Q gi|254780495|r 104 NFGSFEKFKSDLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLD-FKY-RRAHYIESF 181 (205)
Q Consensus 104 ~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~~~~L~i~~~~n~~~p~~~~~~PlL~iDvWEHAYylD-Y~n-~r~~Yi~~f 181 (205)
|-.|...|++.......+..|+ --+|.-|+.++ +-+-+.-.-....-|+|+||-..|.|... ++. -.+.-+++|
T Consensus 28 D~~svk~F~~~V~~~L~~~~~~-vNfltadG~~F---~Hpl~HlgKs~~DLP~IaIDsf~hMY~fp~f~di~~pGkLkqF 103 (111)
T cd03072 28 DLESLKEFKQAVARQLISEKGA-INFLTADGDKF---RHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQF 103 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-EEEEECCCCHH---CCHHHHHCCCHHCCCEEEEEECCEEEECCCCCCCCCCCHHHHH
T ss_conf 0017999999999999985374-55896273001---2568885898100968876503212577991223587539999
Q ss_pred H
Q ss_conf 8
Q gi|254780495|r 182 I 182 (205)
Q Consensus 182 ~ 182 (205)
+
T Consensus 104 i 104 (111)
T cd03072 104 V 104 (111)
T ss_pred H
T ss_conf 9
No 11
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.57 E-value=15 Score=17.54 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCEEEE--ECC----CCEEEEEECCC
Q ss_conf 4308999999999998620143431001--034----10123443147
Q gi|254780495|r 103 DNFGSFEKFKSDLITAASTQFGSGWGWL--SVK----NGKLEISKTQN 144 (205)
Q Consensus 103 ~~FGS~d~fk~~f~~~A~s~~GsGWvwL--~~~----~~~L~i~~~~n 144 (205)
..+||+.+++...+..|.++.-.||+|= +.+ -=||.|-.-++
T Consensus 214 ~~~~Syk~~~r~~~~iA~gmi~r~~A~~nll~~~Fp~~iRlSIH~hp~ 261 (330)
T COG3207 214 DYQGSYKALQRDAKEIAYGMIQRSWAWGNLLADQFPRAIRLSIHPHPA 261 (330)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 131017999999999987688862788889998602444886347877
No 12
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit; InterPro: IPR014307 Members of this protein are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalisation among xanthine dehydrogenases in eukaryotes. ; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0050660 FAD binding.
Probab=37.26 E-value=25 Score=16.19 Aligned_cols=83 Identities=16% Similarity=0.291 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE----CCCCEEE-EEECCCCCCCCCCCCCCEEEEEH---
Q ss_conf 764068999999743089999999999986201434310010----3410123-44314767540014785356437---
Q gi|254780495|r 90 KGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLS----VKNGKLE-ISKTQNAENPLINGAIPILGIDV--- 161 (205)
Q Consensus 90 ~~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~----~~~~~L~-i~~~~n~~~p~~~~~~PlL~iDv--- 161 (205)
.+-+-.+..++|.+.|-++. .+.++-.+++.+ |-++. .+-|+|- ++ .| .+||.+.-.+|++++-
T Consensus 294 A~v~l~~a~~~L~~~~P~l~-~~T~~Fq~~~el----~~RfAs~QiRN~GTlGGNI--AN-GSPIGD~pP~LIALGA~l~ 365 (515)
T TIGR02963 294 AGVTLTDAYAALAERYPELG-AKTRLFQAALEL----LRRFASLQIRNAGTLGGNI--AN-GSPIGDSPPALIALGATLT 365 (515)
T ss_pred CCCCHHHHHHHHHHHCCCHH-HHHHHHHHHHHH----HHHHCCCCCCCCCCCCCCC--CC-CCCCCCCCHHHHHCCCEEE
T ss_conf 48888899999987242201-347889999999----9986889732011013642--26-6876667837871398799
Q ss_pred ----------HHHHHHHHHC-CCHH--HHHHH
Q ss_conf ----------6877698751-7749--99999
Q gi|254780495|r 162 ----------WEHAYYLDFK-YRRA--HYIES 180 (205)
Q Consensus 162 ----------WEHAYylDY~-n~r~--~Yi~~ 180 (205)
==-+||+||+ ++|. ++|++
T Consensus 366 LR~G~~~R~lpLEdfFi~Y~k~~~~pgEFve~ 397 (515)
T TIGR02963 366 LRKGETRRTLPLEDFFIDYGKQDRQPGEFVEA 397 (515)
T ss_pred EECCCCCCCCHHHHHHHHHHHEECCCCCEEEE
T ss_conf 97077523211777746720201035507888
No 13
>TIGR02102 pullulan_Gpos pullulanase, extracellular; InterPro: IPR011838 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterised members of this family include a surface-located pullulanase from Streptococcus pneumoniae and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity ..
Probab=30.32 E-value=36 Score=15.27 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 433222568999850788
Q gi|254780495|r 69 NNASQYYNHNLFWACMKK 86 (205)
Q Consensus 69 nnagg~~nH~lff~~l~p 86 (205)
|-.||..|=..-|++|..
T Consensus 741 FiTGG~~~~~~iF~nikA 758 (1164)
T TIGR02102 741 FITGGARNVQGIFKNIKA 758 (1164)
T ss_pred EECCCHHHHHHHHHHHHC
T ss_conf 135864468878655203
No 14
>pfam09347 DUF1989 Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.
Probab=29.62 E-value=42 Score=14.89 Aligned_cols=15 Identities=7% Similarity=-0.046 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 899999999999862
Q gi|254780495|r 106 GSFEKFKSDLITAAS 120 (205)
Q Consensus 106 GS~d~fk~~f~~~A~ 120 (205)
+..|+|..++.+-++
T Consensus 108 nC~dN~~~al~~~Gl 122 (167)
T pfam09347 108 NCRDNLLLALAKYGL 122 (167)
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 659999999998399
No 15
>KOG0394 consensus
Probab=29.19 E-value=35 Score=15.38 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=28.6
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCCCC--CEEEEEC----CCCEEEEEECC
Q ss_conf 99743089999999999986201434--3100103----41012344314
Q gi|254780495|r 100 AIDDNFGSFEKFKSDLITAASTQFGS--GWGWLSV----KNGKLEISKTQ 143 (205)
Q Consensus 100 ~I~~~FGS~d~fk~~f~~~A~s~~Gs--GWvwL~~----~~~~L~i~~~~ 143 (205)
-+.+.|+++++|+++|...|.-..-- -.|.|.- ++|+-+++++.
T Consensus 92 ~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~ 141 (210)
T KOG0394 92 NNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK 141 (210)
T ss_pred CCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHH
T ss_conf 86466511878999998746879977566799755114777750120188
No 16
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit; InterPro: IPR014309 Members of this entry are the molybdopterin-containing large subunit of xanthine dehydrogenase (or, in, eukaryotes, the molybdopterin-binding domain) and those enzymes that reduces the purine pool by catabolizing xanthine to urate. This entry contains primarily bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.; GO: 0004854 xanthine dehydrogenase activity, 0004855 xanthine oxidase activity, 0030151 molybdenum ion binding, 0050660 FAD binding.
Probab=29.15 E-value=24 Score=16.34 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCCCEEE---EECC-CCEEEEEECCCCCCCCCCCCCCEEEEEHHH
Q ss_conf 14343100---1034-101234431476754001478535643768
Q gi|254780495|r 122 QFGSGWGW---LSVK-NGKLEISKTQNAENPLINGAIPILGIDVWE 163 (205)
Q Consensus 122 ~~GsGWvw---L~~~-~~~L~i~~~~n~~~p~~~~~~PlL~iDvWE 163 (205)
+||-||.= |+|| .|||.--.=.-.-.|...+....+-+.+||
T Consensus 653 vQGmGWLTTEELvWd~~GrL~ThAPSTYKIP~~~D~P~~F~V~L~~ 698 (761)
T TIGR02965 653 VQGMGWLTTEELVWDEKGRLRTHAPSTYKIPAASDRPKDFNVRLLE 698 (761)
T ss_pred ECCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 7387501320123668896502788733446433787122030023
No 17
>pfam02868 Peptidase_M4_C Thermolysin metallopeptidase, alpha-helical domain.
Probab=28.06 E-value=47 Score=14.60 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHH-HHHHHHHH---CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 322256899985078888876406899-99997430---899999999999862014343
Q gi|254780495|r 71 ASQYYNHNLFWACMKKNDGKGKVPQAL-SDAIDDNF---GSFEKFKSDLITAASTQFGSG 126 (205)
Q Consensus 71 agg~~nH~lff~~l~p~~~~~~p~~~L-~~~I~~~F---GS~d~fk~~f~~~A~s~~GsG 126 (205)
-||..||.||.-.....+-+-+-.+.+ ..++...+ -+|..++....++|..++|.+
T Consensus 81 nSGI~N~AFYLla~~~~g~g~eka~~I~y~Al~~~lt~~s~F~~~~~~~i~aA~~lyg~~ 140 (156)
T pfam02868 81 NSGIPNKAFYLLAEGGGGIGIEKAGKIFYRALTVYLTPNSDFADARAATIQAAKDLYGAN 140 (156)
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 564425999999963677559999999999987027999879999999999999987799
No 18
>TIGR03424 urea_degr_1 urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=27.96 E-value=44 Score=14.76 Aligned_cols=17 Identities=6% Similarity=0.044 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 89999999999986201
Q gi|254780495|r 106 GSFEKFKSDLITAASTQ 122 (205)
Q Consensus 106 GS~d~fk~~f~~~A~s~ 122 (205)
+..|+|..++.+-+++.
T Consensus 113 nC~dNl~~al~~~Gl~~ 129 (198)
T TIGR03424 113 ACRDNFLLAIAKYGLGK 129 (198)
T ss_pred CHHHHHHHHHHHHCCCH
T ss_conf 52899999998809982
No 19
>pfam09249 tRNA_NucTransf2 tRNA nucleotidyltransferase, second domain. Members of this family adopt a structure consisting of a five helical bundle core. They are predominantly found in Archaeal tRNA nucleotidyltransferase, following the catalytic nucleotidyltransferase domain.
Probab=25.77 E-value=52 Score=14.35 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEH
Q ss_conf 068999999743089999999999986201434310010341012344314767540014785356437
Q gi|254780495|r 93 VPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDV 161 (205)
Q Consensus 93 p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvwL~~~~~~L~i~~~~n~~~p~~~~~~PlL~iDv 161 (205)
-||-|.+.+--.||||++..++. |.|- .+ .++...++......-.-||++||=
T Consensus 25 FSGYl~ElLii~YGsF~~~lk~a---------~~wk-----~~--~~Id~e~~~~~~~~f~~PlvviDP 77 (114)
T pfam09249 25 FSGYLCELLVIHYGGFENVLKAA---------SKWR-----PG--VVIDLEGHGEAGKKFDDPLVVIDP 77 (114)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHH---------HHCC-----CC--EEEECCCCCCHHHCCCCCEEEECC
T ss_conf 22899999999974599999999---------8428-----98--598046566132216999797489
No 20
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=22.67 E-value=59 Score=14.00 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 640689999997430899999999999862014343100
Q gi|254780495|r 91 GKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGW 129 (205)
Q Consensus 91 ~~p~~~L~~~I~~~FGS~d~fk~~f~~~A~s~~GsGWvw 129 (205)
.......++.+.+.|||+++++..-.+...++.|-|=+.
T Consensus 517 r~VG~~~Ak~La~~f~sl~~l~~a~~e~l~~i~giG~~v 555 (667)
T COG0272 517 RHVGETTAKSLARHFGTLEALLAASEEELASIPGIGEVV 555 (667)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf 114089999999876029999842999995066612899
No 21
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=20.07 E-value=67 Score=13.67 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 17749999999861
Q gi|254780495|r 171 KYRRAHYIESFITN 184 (205)
Q Consensus 171 ~n~r~~Yi~~f~~n 184 (205)
.+.+++.-.+| -|
T Consensus 215 ~~~~~e~~r~f-~n 227 (233)
T TIGR03425 215 RTARPENRRAF-EN 227 (233)
T ss_pred HCCCHHHHHHH-HH
T ss_conf 31698787777-73
Done!