HHsearch alignment for GI: 254780495 and conserved domain: pfam00081
>pfam00081 Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain. superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. N-terminal domain is a long alpha antiparallel hairpin. A small fragment of YTRE_LEPBI matches well - sequencing error?
Probab=99.96 E-value=1.9e-30 Score=199.81 Aligned_cols=82 Identities=43% Similarity=0.764 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87799999986555864699999998732887899889998500023320045789764101114554332225689998
Q gi|254780495|r 2 DFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLFW 81 (205)
Q Consensus 2 ~~~Lp~Lpy~~~aLeP~IS~~tl~~Hy~kHh~~YV~~lN~~~~~~~~~~~~l~~~~~~~~~~~~~~~nnagg~~nH~lff 81 (205)
T Consensus 1 kf~Lp~LpY~y~aLeP~Is~~tm~~Hh~kHh~~YV~~lN~~l~~~~~~~~~~~~~~~~--~~~~~v~nNagg~~NH~lfW 78 (82)
T pfam00081 1 KYELPDLPYDYDALEPHISKETMEIHHGKHHQTYVNNLNAALEGLEEARKKLEEIILK--ALLGALFNNGGGHWNHSFFW 78 (82)
T ss_pred CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998663413338999999999999999999999997317641687799999--98999887102798899998
Q ss_pred HHCC
Q ss_conf 5078
Q gi|254780495|r 82 ACMK 85 (205)
Q Consensus 82 ~~l~ 85 (205)
T Consensus 79 ~~ms 82 (82)
T pfam00081 79 KNLS 82 (82)
T ss_pred HHCC
T ss_conf 7637