RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780495|ref|YP_003064908.1| superoxide dismutase [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Length = 213 Score = 226 bits (577), Expect = 4e-60 Identities = 77/199 (38%), Positives = 112/199 (56%), Gaps = 8/199 (4%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 F L LP++ D + ++S ++HH HH+ Y +N L + SL I+ KS G Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSSG 61 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122 G+FNNA+Q YNH+ +W C+ A++ +FGS EKFK D I +A+T Sbjct: 62 ---GVFNNAAQIYNHDFYWDCLSPKATALSDELK--GALEKDFGSLEKFKEDFIKSATTL 116 Query: 123 FGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIES 180 FGSGW W + K+EI +T NA+ P+ + +P+L +DVWEHAYY+D K R Y+E Sbjct: 117 FGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEK 176 Query: 181 FITNLVNWEYVCERYETAM 199 F +NW +V + YE A Sbjct: 177 FY-GHINWHFVSQCYEWAK 194 >1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1 Length = 248 Score = 208 bits (531), Expect = 7e-55 Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 8/203 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIK-- 59 +LP LPY YD L + ET++ HHD HH Y +N L E+ + S+E ++ Sbjct: 38 AELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLN 97 Query: 60 --SHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLIT 117 + NN + NH +FW M + G G+ ++ I+ FGSFE+FK Sbjct: 98 SVPEDIRTTVRNNGGGHLNHTIFWQIMSPDGG-GQPTGDIAQEINQTFGSFEEFKKQFNQ 156 Query: 118 AASTQFGSGWGWLSV-KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAH 176 A +FGSGW WL G+L++ T N +NP++ G+ PI+G DVWEHAYYL ++ RR Sbjct: 157 AGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQNRRPE 216 Query: 177 YIESFITNLVNWEYVCERYETAM 199 Y+ ++ N+VNW + R + + Sbjct: 217 YLNNWW-NVVNWSEINRRTQASR 238 >1p7g_A Superoxide dismutase; alpha-beta, oxidoreductase; 1.80A {Pyrobaculum aerophilum} SCOP: a.2.11.1 d.44.1.1 PDB: 3evk_A Length = 222 Score = 204 bits (519), Expect = 2e-53 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 + LP LPY+Y+ L PY+S E ++ HH HH+ Y + A E +I I++ Sbjct: 16 KRYTLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRA 75 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKK-NDGKGKVPQALSDAIDDNFGSFEKFKSDLITAA 119 + L + + + H++FW M G GK ++D I+ FGSFEKFK + AA Sbjct: 76 VLRD--LSFHLNGHILHSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQAA 133 Query: 120 STQFGSGWGWLSVKN--GKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177 G GW L + +L I + + A +L +DVWEHAYYL +K R Y Sbjct: 134 KNVEGVGWAILVYEPLEEQLLILQIEKHNLMHAADAQVLLALDVWEHAYYLQYKNDRGSY 193 Query: 178 IESFITNLVNWEYVCERYETAMLAQ 202 ++++ N+VNW+ V R + A+ Q Sbjct: 194 VDNWW-NVVNWDDVERRLQKALNGQ 217 >1kkc_A Mnsod, manganese superoxide dismutase; homotetramer, oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP: a.2.11.1 d.44.1.1 Length = 221 Score = 200 bits (510), Expect = 2e-52 Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 6/201 (2%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 + LP LPY YD L PY+S++ +E HH HH+ Y + + + + K Sbjct: 14 QQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEA--TDVPKL 71 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQ---ALSDAIDDNFGSFEKFKSDLIT 117 + N + NH+LFW + G L AI+ +GSF+KFK T Sbjct: 72 VSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNT 131 Query: 118 AASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177 GSGWGWL K ++ T + + GA P+ G+D+WEHAYYL + +A Y Sbjct: 132 TLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAAPVFGVDMWEHAYYLQYLNDKASY 191 Query: 178 IESFITNLVNWEYVCERYETA 198 + N++NW RY Sbjct: 192 AKGIW-NVINWAEAENRYIAG 211 >1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Length = 199 Score = 199 bits (507), Expect = 4e-52 Identities = 90/199 (45%), Positives = 129/199 (64%), Gaps = 4/199 (2%) Query: 3 FKLPNLPYSYDDLSPY-MSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSH 61 F LP+ L PY MS +TLE+H+ HHK Y DN KL D E+ SLE++I ++ Sbjct: 2 FVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTY 61 Query: 62 GS--NAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAA 119 G G+FNNA+Q +NH FW +K G ++ I+ FGS+++FK+ AA Sbjct: 62 GDAAKVGIFNNAAQVWNHTFFWNSLKPGGGG-VPTGDVAARINSAFGSYDEFKAQFKNAA 120 Query: 120 STQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 +TQFGSGW WL ++ G L+++KT NAENPL++G +P+L IDVWEHAYYLD++ RR +I+ Sbjct: 121 ATQFGSGWAWLVLEAGTLKVTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNRRPDFID 180 Query: 180 SFITNLVNWEYVCERYETA 198 +F+ LVNW++V + A Sbjct: 181 NFLNQLVNWDFVAKNLAAA 199 >1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A Length = 207 Score = 199 bits (506), Expect = 4e-52 Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 6/200 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 ++ LP+L + Y L P++S + E HH HH Y A A++ +E Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 + L N + + NH ++W + N G K L+ AI D FGSF+KF++ AA+ Sbjct: 60 LLNEKNLAFNLAGHVNHTIWWKNLSPN-GGDKPTGELAAAIADAFGSFDKFRAQFHAAAT 118 Query: 121 TQFGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYI 178 T GSGW L KL I + + + G +P+L +D+WEHA+YL +K + + Sbjct: 119 TVQGSGWAALGWDTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFA 178 Query: 179 ESFITNLVNWEYVCERYETA 198 ++F N+VNW V RY A Sbjct: 179 KAFW-NVVNWADVQSRYAAA 197 >1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A Length = 203 Score = 199 bits (506), Expect = 5e-52 Identities = 75/204 (36%), Positives = 108/204 (52%), Gaps = 8/204 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 FKLP+L Y Y+ L P++ +T+E HH HH Y N LH E++++ Sbjct: 2 YPFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRH 61 Query: 61 H-----GSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDL 115 + NN + NH+LFW + + L AID+ FG F+ K L Sbjct: 62 LAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGA-KEPVGELKKAIDEQFGGFQALKEKL 120 Query: 116 ITAASTQFGSGWGWLSVKN-GKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRR 174 AA +FGSGW WL GKL + T N +NP++ G PI+GIDVWEHAYYL ++ RR Sbjct: 121 TQAAMGRFGSGWAWLVKDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRR 180 Query: 175 AHYIESFITNLVNWEYVCERYETA 198 A Y+++ N++NW+ E ++ A Sbjct: 181 ADYLQAIW-NVLNWDVAEEFFKKA 203 >3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A Length = 211 Score = 198 bits (504), Expect = 7e-52 Identities = 92/211 (43%), Positives = 125/211 (59%), Gaps = 14/211 (6%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIK- 59 M + LP LPY+YD L P++ T+E HH HH+ Y DNA K E L +E++I + Sbjct: 1 MAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQL 60 Query: 60 ---SHGSNAGLFNNASQYYNHNLFWACM---KKNDGKGKVPQALSDAIDDNFGSFEKFKS 113 L NNA + NH++FW M + +G + L DAI+ FGSF+ FK Sbjct: 61 DRVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQ 120 Query: 114 DLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYY 167 AA T+FGSGW WL VK+GKL++ T N +NPL+ AI PILG+DVWEHAYY Sbjct: 121 KFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 180 Query: 168 LDFKYRRAHYIESFITNLVNWEYVCERYETA 198 L+++ RR Y+ +F N+VNW+ V +RY A Sbjct: 181 LNYQNRRPDYLAAFW-NVVNWDEVSKRYAAA 210 >1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Length = 205 Score = 197 bits (501), Expect = 2e-51 Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 6/200 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 ++LP LPY YD L P++S+E L HH HH+ Y D A L + S ++ IK+ Sbjct: 9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKA-- 66 Query: 63 SNAGLFNNASQYYNHNLFWACMKK-NDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAST 121 + L + Y H FW M ++ G+ L++ I+ +FGSFE+F+ + AA + Sbjct: 67 ALKELSFHVGGYVLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAIS 126 Query: 122 QFGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 GSGW L+ + +L I + + +I +L +DVWEHAYY+D++ R Y+E Sbjct: 127 AEGSGWAVLTYCQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVE 186 Query: 180 SFITNLVNWEYVCERYETAM 199 +F N+VNW+ V +R+E + Sbjct: 187 AFW-NIVNWKEVEKRFEDIL 205 >1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} Length = 217 Score = 196 bits (499), Expect = 3e-51 Identities = 79/206 (38%), Positives = 116/206 (56%), Gaps = 7/206 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIKSH 61 F+LP L Y YD+L PY+ TL HH HH Y +N L + +E+ + SLEE++ Sbjct: 13 FQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLE 72 Query: 62 GSN----AGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLIT 117 + NN +Y H+LFW M G G+ ++ ID F +F+ K L Sbjct: 73 TLPKEIVTAVRNNGGGHYCHSLFWEVMS-PRGGGEPNGDVAKVIDYYFNTFDNLKDQLSK 131 Query: 118 AASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177 AA ++FGSG+GWL + +L + T N + PL G IP+L IDVWEHAYYL ++ RR + Sbjct: 132 AAISRFGSGYGWLVLDGEELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRRPEF 191 Query: 178 IESFITNLVNWEYVCERYETAMLAQK 203 + ++ + VNW+ V E+Y A+ +QK Sbjct: 192 VTNWW-HTVNWDRVNEKYLQAIQSQK 216 >1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 1en5_A 1en4_A 1i08_A 1en6_A Length = 205 Score = 192 bits (490), Expect = 3e-50 Identities = 87/207 (42%), Positives = 123/207 (59%), Gaps = 15/207 (7%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIKSH 61 + LP+LPY+YD L P+ K+T+E HH HH+ Y +NA L S E +L +EE+I K Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61 Query: 62 GSNAG----LFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLIT 117 A L NNA + NH+LFW +KK + L AI+ +FGS + FK++ Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKG---TTLQGDLKAAIERDFGSVDNFKAEFEK 118 Query: 118 AASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYYLDFK 171 AA+++FGSGW WL +K KL + T N ++PL+ AI PI+G+DVWEHAY+L F+ Sbjct: 119 AAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYFLKFQ 178 Query: 172 YRRAHYIESFITNLVNWEYVCERYETA 198 RR YI+ F N+VNW+ R+ Sbjct: 179 NRRPDYIKEFW-NVVNWDEAAARFAAK 204 >3bfr_A Superoxide dismutase [MN]; alpha/beta fold, manganese, metal-binding, mitochondrion, oxidoreductase, transit peptide; 2.05A {Saccharomyces cerevisiae} Length = 215 Score = 191 bits (486), Expect = 1e-49 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 12/206 (5%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 LP+L + + L PY+S + E H+ HH+ Y + + L L + ++ Sbjct: 10 VTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQFQELSDLLAKEPSPANA 69 Query: 63 SN-----AGLFNNASQYYNHNLFWACMKKN-DGKGKVPQ-ALSDAIDDNFGSFEKFKSDL 115 + + + NH LFW + G G+ P AL+ AID+ FGS ++ Sbjct: 70 RKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLT 129 Query: 116 ITAASTQFGSGWGWLSV---KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKY 172 T + GSGW ++ GKL++ +T N + + +P++ ID WEHAYYL ++ Sbjct: 130 NTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQ-DTVTGPLVPLVAIDAWEHAYYLQYQN 188 Query: 173 RRAHYIESFITNLVNWEYVCERYETA 198 ++A Y ++ N+VNW+ R++ Sbjct: 189 KKADYFKAIW-NVVNWKEASRRFDAG 213 >3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A Length = 195 Score = 191 bits (485), Expect = 1e-49 Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 5/199 (2%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 M LP+LP+ Y DL P +S E ++ HH HH Y +N ++ + + + ++ Sbjct: 1 MKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEK--LHEAVSKGNLKEA 58 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 L N + NH++FW + K+ G+ + L D I +FGS + + L Sbjct: 59 IALQPALKFNGGGHINHSIFWTNLAKD--GGEPSKELMDTIKRDFGSLDNLQKRLSDITI 116 Query: 121 TQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIES 180 GSGWGWL + A + G +P+ GIDVWEHAYYL +K R Y+ + Sbjct: 117 AVQGSGWGWLGYCKKDKILKIATCANQDPLEGMVPLFGIDVWEHAYYLQYKNVRPDYVHA 176 Query: 181 FITNLVNWEYVCERYETAM 199 + NW+ + ER+ A Sbjct: 177 IW-KIANWKNISERFANAR 194 >2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A Length = 202 Score = 190 bits (484), Expect = 2e-49 Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 7/203 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIK 59 M ++LP LPY+YD L P++ KET+ HH HH Y N K + + + + S+EE++ Sbjct: 1 MAYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVAD 60 Query: 60 ----SHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDL 115 + NN + NH LFW + +G G+ AL++ I+ FGSF+KFK Sbjct: 61 LDSVPENIRTAVRNNGGGHANHKLFWTLLS-PNGGGEPTGALAEEINSVFGSFDKFKEQF 119 Query: 116 ITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRA 175 +FGSGW WL V NGKLEI+ T N ++PL G PILG+DVWEHAYYL+++ RR Sbjct: 120 XXXXXGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRP 179 Query: 176 HYIESFITNLVNWEYVCERYETA 198 YI +F N+VNW+ V Y Sbjct: 180 DYISAFW-NVVNWDEVARLYSER 201 >1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ... Length = 198 Score = 189 bits (481), Expect = 4e-49 Identities = 70/199 (35%), Positives = 102/199 (51%), Gaps = 7/199 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 LP+LPY Y L P+++ + ++ HH HH Y +N ++ + + + Sbjct: 2 HSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN--VTEEKYQEALAKGDVTAQIA 59 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122 L N + NH++FW + N G G+ L +AI +FGSF+KFK L A+ Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPN-GGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGV 118 Query: 123 FGSGWGWLSV-KNGKLEISKTQNAENPL--INGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 GSGWGWL K ++PL G IP+LGIDVWEHAY+L +K R Y++ Sbjct: 119 QGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLK 178 Query: 180 SFITNLVNWEYVCERYETA 198 + N++NWE V ERY Sbjct: 179 AIW-NVINWENVTERYMAC 196 >3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A Length = 192 Score = 188 bits (479), Expect = 7e-49 Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 7/195 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 F+LP+LPY+ D L P++SKETLE+HH HH Y L + + SLEEI+ Sbjct: 2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIV---CS 58 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122 S+ G+FNNA+Q +NH +W + N G G A++DAI+ +GSF+ FK L A Sbjct: 59 SDGGVFNNAAQIWNHTFYWNSLSPN-GGGAPTGAVADAINAKWGSFDAFKEALNDKAVNN 117 Query: 123 FGSGWGWL-SVKNGKLEISKTQNAENPLI-NGAIPILGIDVWEHAYYLDFKYRRAHYIES 180 FGS W WL + +G L+I T NA PL +G PIL +D+WEHAYY+D++ R Y++ Sbjct: 118 FGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKG 177 Query: 181 FITNLVNWEYVCERY 195 F +LVNWE+ + Sbjct: 178 FW-SLVNWEFANANF 191 >3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infectious disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum HZ} Length = 227 Score = 188 bits (477), Expect = 1e-48 Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 12/207 (5%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHL---SLEEII 57 F+L +LPY + L PY+S L+ H++ HHK Y D KL E L SL +I+ Sbjct: 21 SMFELSDLPY--EGLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIV 78 Query: 58 IKSHGSNA---GLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSD 114 +K+H S + +FNNA+Q +NH+ +W MK N G G P+ L + I+ +FGS E F + Sbjct: 79 VKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPN-GGGNPPEKLREMIEHSFGSVEGFNNA 137 Query: 115 LITAASTQFGSGWGWLSVKNG--KLEISKTQNAENPL-INGAIPILGIDVWEHAYYLDFK 171 T+ QFGSGW WL L++ T NA++PL G +P+ +DVWEHAYYLD+ Sbjct: 138 FTTSGLGQFGSGWVWLVYDEDAKALKVVSTANADSPLLTQGQLPLATMDVWEHAYYLDYL 197 Query: 172 YRRAHYIESFITNLVNWEYVCERYETA 198 R YI+ F+ +L+NW++V R E A Sbjct: 198 NLRKKYIDVFLEHLLNWDFVLGRLEDA 224 >1y67_A Mnsod, manganese superoxide dismutase; manganese enzyme, metalloprotein, oxidoreductase; 1.85A {Deinococcus radiodurans} SCOP: a.2.11.1 d.44.1.1 PDB: 2aw9_A 2cdy_A 2ce4_A Length = 229 Score = 187 bits (476), Expect = 1e-48 Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 14/216 (6%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIK- 59 + LP LPY+YD L P++ T+E HH HH+ Y DNA K E L +E++I + Sbjct: 2 AAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQL 61 Query: 60 ---SHGSNAGLFNNASQYYNHNLFWACM---KKNDGKGKVPQALSDAIDDNFGSFEKFKS 113 L NNA + NH++FW M + +G + L DAI+ FGSF+ FK Sbjct: 62 DRVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQ 121 Query: 114 DLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYY 167 AA T+FGSGW WL VK+GKL++ T N +NPL+ AI PILG+DVWEHAYY Sbjct: 122 KFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 181 Query: 168 LDFKYRRAHYIESFITNLVNWEYVCERYETAMLAQK 203 L+++ RR Y+ +F N+VNW+ V +RY A L + Sbjct: 182 LNYQNRRPDYLAAFW-NVVNWDEVSKRYAAAKLVPR 216 >2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus} Length = 280 Score = 185 bits (471), Expect = 5e-48 Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 6/197 (3%) Query: 8 LPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGL 67 LPY + L P +S T+++H++ HH+ Y L E + + + + Sbjct: 84 LPYGLEALEPVISAATVDFHYNKHHQGYIQKLLDATGLPESRINLKSLVTLGPDRAGENV 143 Query: 68 FNNASQYYNHNLFWACMKK-NDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSG 126 FN A Q YNHN++W M + VP L I +G+ ++ K + + A+ FGSG Sbjct: 144 FNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSG 203 Query: 127 WGWLSVK--NGKLEISKTQNAENPL--INGAIPILGIDVWEHAYYLDFKYRRAHYIESFI 182 W WL +L++ T++A +PL G IP+ DVWEHAYYLD+++ RA Y+ + Sbjct: 204 WIWLVWDTRERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYYLDYQHDRAAYLTRWW 263 Query: 183 TNLVNWEYVCERYETAM 199 +L+NWE+ + + Sbjct: 264 -SLINWEFADSNLPSDI 279 >1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1 Length = 238 Score = 185 bits (471), Expect = 5e-48 Identities = 95/218 (43%), Positives = 124/218 (56%), Gaps = 21/218 (9%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 F+L PY + L P MS++TLE+H HH+ Y +N K E+ SLEEII+ + Sbjct: 17 AKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSLEEIIVTA 76 Query: 61 --HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITA 118 G FNNA+Q +NH+ FW CMK G GK L + I+ +FGSFEKF + A Sbjct: 77 YNKGDILPAFNNAAQVWNHDFFWECMKPG-GGGKPSGELLELIERDFGSFEKFLDEFKAA 135 Query: 119 ASTQFGSGWGWLSV-----------------KNGKLEISKTQNAENPLI-NGAIPILGID 160 A+TQFGSGW WL+ ++ KL + K+ NA NPL+ G P+L ID Sbjct: 136 AATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLTID 195 Query: 161 VWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYETA 198 VWEHAYYLDF+ RR YI F+ LV+W+ V R E A Sbjct: 196 VWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQA 233 >1dt0_A Superoxide dismutase; pseudomonas ovalis; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1 PDB: 3sdp_A Length = 197 Score = 183 bits (466), Expect = 2e-47 Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 6/197 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 F+LP LPY++D L P++SKETLE+HHD HH Y N L E +LEEI+ S G Sbjct: 2 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTSSG 61 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122 G+FNNA+Q +NH +W C+ N G+ AL+DAI+ FGSF+KFK + + Sbjct: 62 ---GIFNNAAQVWNHTFYWNCLSPN-AGGQPTGALADAINAAFGSFDKFKEEFTKTSVGT 117 Query: 123 FGSGWGWLSV-KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESF 181 FGSGWGWL +G L ++ T A PL G P+L DVWEHAYY+D++ R Y+E+F Sbjct: 118 FGSGWGWLVKKADGSLALASTIGAGCPLTIGDTPLLTCDVWEHAYYIDYRNLRPKYVEAF 177 Query: 182 ITNLVNWEYVCERYETA 198 NLVNW +V E++E Sbjct: 178 W-NLVNWAFVAEQFEGK 193 >2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} Length = 226 Score = 178 bits (451), Expect = 1e-45 Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 4/196 (2%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 F+ P LPY + L P+MS ETL YHHD HH+ Y D +A++ + E IIK+ Sbjct: 33 FQCPPLPYVKNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTLEQIIKTE- 91 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122 FN A+Q YNH F+ + N G G+ +++ I +FGSFEKFK D AA Sbjct: 92 -TGKPFNQAAQVYNHTFFFNNLAPN-GGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGH 149 Query: 123 FGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESFI 182 FGSGW WL +GKL+I + +A NP+ P++ IDVWEHAYY+D++ RA Y++++ Sbjct: 150 FGSGWVWLIADDGKLKIVQGHDAGNPIRESKTPLMNIDVWEHAYYIDYRNARAQYVKNYW 209 Query: 183 TNLVNWEYVCERYETA 198 NLVNW++V + A Sbjct: 210 -NLVNWDFVNDNVAKA 224 >2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A Length = 192 Score = 177 bits (450), Expect = 2e-45 Identities = 86/195 (44%), Positives = 115/195 (58%), Gaps = 6/195 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 F+LP LPY+ D L+P++S ET+EYH+ HH+ Y N L SLEEII S G Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEG 61 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122 G+FNNA++ +NH +W C+ N G+ +++AI +FGSF FK+ AA Sbjct: 62 ---GVFNNAAEVWNHTFYWNCLAPN-AGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKN 117 Query: 123 FGSGWGWLSVKNG-KLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESF 181 FGSGW WL + KL I T NA PL A P+L +DVWEHAYY+D++ R Y+E F Sbjct: 118 FGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHF 177 Query: 182 ITNLVNWEYVCERYE 196 LVNWE+V + Sbjct: 178 W-ALVNWEFVAKNLA 191 >1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A Length = 191 Score = 171 bits (435), Expect = 7e-44 Identities = 93/196 (47%), Positives = 121/196 (61%), Gaps = 6/196 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 M +L +LPY+ D L+P +SKET+E+HH H K Y DN KL E + L I+ KS Sbjct: 1 MTHELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLNTIVQKS 60 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 G G+FNNA Q NHNL++ + G G L +AID FGSFEKFK + TA + Sbjct: 61 EG---GIFNNAGQTLNHNLYFTQFRPGKG-GAPKGKLGEAIDKQFGSFEKFKEEFNTAGT 116 Query: 121 TQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 T FGSGW WL+ NGKL I K NA NP+ G P+LG DVWEHAYYL ++ RRA +++ Sbjct: 117 TLFGSGWVWLASDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLK 176 Query: 180 SFITNLVNWEYVCERY 195 ++V+W+ V RY Sbjct: 177 DLW-SIVDWDIVESRY 191 >2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A Length = 198 Score = 171 bits (434), Expect = 9e-44 Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 7/201 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 M LP L Y+ + LSP++S+ETL +H++ HH Y + L D SL EI+ +S Sbjct: 1 MAIILPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIMKES 60 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 G+ FNNA+Q +NH+ +W M N G G+ + + I ++FGSF FK++ Sbjct: 61 TGAI---FNNAAQIWNHSFYWDSMGPNCG-GEPHGEIKEKIQEDFGSFNNFKNEFSNVLC 116 Query: 121 TQFGSGWGWLSV-KNGKLEISKTQNAENPLING-AIPILGIDVWEHAYYLDFKYRRAHYI 178 FGSGWGWL + N KL I +T +A NP+ + IPIL D+WEHAYY+D++ R Y+ Sbjct: 117 GHFGSGWGWLVLNNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRPSYV 176 Query: 179 ESFITNLVNWEYVCERYETAM 199 +++ NLVNW + E + A+ Sbjct: 177 KAWW-NLVNWNFANENLKKAL 196 >1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichiisubsp} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A Length = 201 Score = 163 bits (412), Expect = 3e-41 Identities = 70/202 (34%), Positives = 102/202 (50%), Gaps = 6/202 (2%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 + LP LPY Y L PY+S E +E HHD HHK Y D A + I Sbjct: 3 YTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKL- 61 Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITAAST 121 L N + + NH++FW M + P L AID+ FGSF+ K+ AA+ Sbjct: 62 -EKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATG 120 Query: 122 QFGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 GSGW L ++ + + +N L G+IP+L +D+WEHA+YL +K + Y++ Sbjct: 121 IQGSGWASLVWDPLGKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVK 180 Query: 180 SFITNLVNWEYVCERYETAMLA 201 S+ N+VNW+ V R+ A +A Sbjct: 181 SWW-NVVNWDDVALRFSEARVA 201 >1b06_A Protein (superoxide dismutase); 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A Length = 210 Score = 159 bits (403), Expect = 4e-40 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 5/203 (2%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIK 59 ++ P LPY D L PY+SK+ ++ H++ HHK Y + A L +++ L + Sbjct: 7 KRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYD 66 Query: 60 SHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITA 118 G GL N + + H ++W M G P AL+D ID +GSF++FK + Sbjct: 67 LQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSES 126 Query: 119 ASTQFGSGWGWL--SVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAH 176 A++ GSGW L ++G L+I +N I IL +D +EHAYYL +K +R Sbjct: 127 ANSLPGSGWTVLYYDNESGNLQIMTVENHFMNHIAELPVILIVDEFEHAYYLQYKNKRGD 186 Query: 177 YIESFITNLVNWEYVCERYETAM 199 Y+ ++ N+VNW+ +R + + Sbjct: 187 YLNAWW-NVVNWDDAEKRLQKYL 208 >3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structural genomics, national institute of allergy and infectious diseases; 1.90A {Francisella tularensis subsp} Length = 195 Score = 157 bits (398), Expect = 1e-39 Identities = 86/197 (43%), Positives = 114/197 (57%), Gaps = 7/197 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 M F+LP LPY+ D L +SKET+EYH+ HH+ Y N L E +LEEI+ Sbjct: 4 MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIV--- 60 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 SN G+FNNA+Q +NH +W C+ N K + L A+ + FGS E FK AA Sbjct: 61 KTSNGGIFNNAAQVFNHTFYWNCLTPN--KTEASSQLKAALIETFGSVENFKEQFSKAAI 118 Query: 121 TQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 FGSGW WL GKLEI T NA PL P+L DVWEHAYY+D++ R Y+E Sbjct: 119 ATFGSGWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYYIDYRNARPKYVE 178 Query: 180 SFITNLVNWEYVCERYE 196 + ++VNW++V E++ Sbjct: 179 ALW-DIVNWQFVSEQFA 194 >1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1 Length = 212 Score = 149 bits (376), Expect = 5e-37 Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 6/206 (2%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 KL + +S E +E H + H+K Y ++ + + +++ Sbjct: 3 HKLEPKDHLKPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYS 62 Query: 63 S----NAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITA 118 N H L++ + KG+ +AL I+++ G + ++L A Sbjct: 63 EYRELKVEETFNYMGVVLHELYFGMLTPGG-KGEPSEALKKKIEEDIGGLDACTNELKAA 121 Query: 119 ASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYI 178 A G L + +G+L ++ + G IP++ ID +EHAYY+D+K +R YI Sbjct: 122 AMAFRGWAILGLDIFSGRLVVNGLDAHNVYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYI 181 Query: 179 ESFITNLVNWEYVCERYETAMLAQKV 204 ++F +NW+ V ER+E AM A + Sbjct: 182 DAFF-KNINWDVVNERFEKAMKAYEA 206 >2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A Length = 194 Score = 148 bits (373), Expect = 1e-36 Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 8/196 (4%) Query: 3 FKLPNLPYSYDDLSPY-MSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSH 61 F +P LP+ YD L+ +SK+ + H+D HH+ Y A L E II Sbjct: 2 FSIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEII--R 59 Query: 62 GSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAST 121 +FN A+Q +NH F+ +G G+ ++D I+ +FGSF KFK + A Sbjct: 60 TEKGPIFNLAAQIFNH-TFYWESMCPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVG 118 Query: 122 QFGSGWGWLSV--KNGKLEISKTQNAENPLINGA-IPILGIDVWEHAYYLDFKYRRAHYI 178 FGSGW WL +GKL++ +T +A PL P+L DVWEHAYY+D+K RA Y+ Sbjct: 119 HFGSGWAWLVKDTNSGKLKVYQTHDAGCPLTEPNLKPLLTCDVWEHAYYVDYKNDRAAYV 178 Query: 179 ESFITNLVNWEYVCER 194 ++F N+VNW+ V + Sbjct: 179 QTFW-NVVNWKNVERQ 193 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.6 bits (78), Expect = 0.015 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 6/24 (25%) Query: 3 FKLPNLPYSYDDLSPYMS-KETLE 25 KL Y+ DD +P ++ K T+E Sbjct: 29 LKL----YA-DDSAPALAIKATME 47 Score = 28.8 bits (63), Expect = 0.90 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%) Query: 33 KNYADN-ALKLASDAEM 48 K YAD+ A LA A M Sbjct: 30 KLYADDSAPALAIKATM 46 >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.60A {Thermobifida fusca YX} PDB: 2qvh_A* Length = 327 Score = 27.1 bits (59), Expect = 2.6 Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 22/160 (13%) Query: 28 HDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLFW------ 81 DV+ D A+++ + L E + A + S + Sbjct: 129 IDVNGAWDVDTAVRMIRLLDRFELEYVEQPCATVDELAEVRRRVSVPIAADESIRRAEDP 188 Query: 82 ----------ACMKKNDGKGKVPQALSDAIDDNFGS--FEKFKSDLITAASTQFGSGWGW 129 + K G V AL A + ++ + AA + Sbjct: 189 LRVRDAEAADVVVLKVQPLGGVRAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPE 248 Query: 130 LSVKNGKLEISKTQN--AENPLI--NGAIPILGIDVWEHA 165 L G + ++PL+ +G +P+ +DV E Sbjct: 249 LPYACGLATLRLLHADVCDDPLLPVHGVLPVRRVDVSEQR 288 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 27.2 bits (60), Expect = 2.8 Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 56/199 (28%) Query: 33 KNYADNALKLASDAEMLHLSLEEII--IKSHG------SNAGLFNNASQYYNHNLFWACM 84 +NY+ + D + L E+I I H S GL + A+Q+ L M Sbjct: 1686 ENYSAMIFETIVDGK---LKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPAL--TLM 1739 Query: 85 KK---ND--GKGKVPQALSDAI--DDNFGSFEKFKS--DLITAAS--------------- 120 +K D KG +P +DA + G + S D+++ S Sbjct: 1740 EKAAFEDLKSKGLIP---ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796 Query: 121 ---TQFG-SGWGWLSVKNGKLEISKTQNAENPLINGA-------IPILGIDVWEHAYYLD 169 + G S +G +++ G++ S +Q A ++ + I+ +V E+ Y+ Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV-ENQQYVA 1855 Query: 170 FKYRRAHYIESFITNLVNW 188 RA +++ +TN++N+ Sbjct: 1856 AGDLRA--LDT-VTNVLNF 1871 >3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 Score = 26.3 bits (57), Expect = 5.6 Identities = 6/48 (12%), Positives = 16/48 (33%) Query: 46 AEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKV 93 A L + E +++ ++ S + H + + K+ Sbjct: 80 AGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKM 127 >3kby_A Putative uncharacterized protein; all helical, unknown funct; 1.80A {Staphylococcus aureus} Length = 145 Score = 25.8 bits (56), Expect = 7.0 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Query: 137 LEISKTQNAENPLINGAIPILGI-------DVWEHAYYLDFKYRRAHYIESFITNLVNWE 189 L I + +NP+++GA IL + DV+E + Y E+ + + + Sbjct: 39 LLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQ 98 Query: 190 YV 191 Y+ Sbjct: 99 YL 100 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.133 0.410 Gapped Lambda K H 0.267 0.0521 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,874,470 Number of extensions: 82252 Number of successful extensions: 383 Number of sequences better than 10.0: 1 Number of HSP's gapped: 270 Number of HSP's successfully gapped: 43 Length of query: 205 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 117 Effective length of database: 3,559,758 Effective search space: 416491686 Effective search space used: 416491686 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.1 bits)