RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780495|ref|YP_003064908.1| superoxide dismutase
[Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori}
Length = 213
Score = 226 bits (577), Expect = 4e-60
Identities = 77/199 (38%), Positives = 112/199 (56%), Gaps = 8/199 (4%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
F L LP++ D + ++S ++HH HH+ Y +N L + SL I+ KS G
Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSSG 61
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122
G+FNNA+Q YNH+ +W C+ A++ +FGS EKFK D I +A+T
Sbjct: 62 ---GVFNNAAQIYNHDFYWDCLSPKATALSDELK--GALEKDFGSLEKFKEDFIKSATTL 116
Query: 123 FGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIES 180
FGSGW W + K+EI +T NA+ P+ + +P+L +DVWEHAYY+D K R Y+E
Sbjct: 117 FGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEK 176
Query: 181 FITNLVNWEYVCERYETAM 199
F +NW +V + YE A
Sbjct: 177 FY-GHINWHFVSQCYEWAK 194
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena
SP} SCOP: a.2.11.1 d.44.1.1
Length = 248
Score = 208 bits (531), Expect = 7e-55
Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 8/203 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIK-- 59
+LP LPY YD L + ET++ HHD HH Y +N L E+ + S+E ++
Sbjct: 38 AELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLN 97
Query: 60 --SHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLIT 117
+ NN + NH +FW M + G G+ ++ I+ FGSFE+FK
Sbjct: 98 SVPEDIRTTVRNNGGGHLNHTIFWQIMSPDGG-GQPTGDIAQEINQTFGSFEEFKKQFNQ 156
Query: 118 AASTQFGSGWGWLSV-KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAH 176
A +FGSGW WL G+L++ T N +NP++ G+ PI+G DVWEHAYYL ++ RR
Sbjct: 157 AGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQNRRPE 216
Query: 177 YIESFITNLVNWEYVCERYETAM 199
Y+ ++ N+VNW + R + +
Sbjct: 217 YLNNWW-NVVNWSEINRRTQASR 238
>1p7g_A Superoxide dismutase; alpha-beta, oxidoreductase; 1.80A
{Pyrobaculum aerophilum} SCOP: a.2.11.1 d.44.1.1 PDB:
3evk_A
Length = 222
Score = 204 bits (519), Expect = 2e-53
Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 6/205 (2%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
+ LP LPY+Y+ L PY+S E ++ HH HH+ Y + A E +I I++
Sbjct: 16 KRYTLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRA 75
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKK-NDGKGKVPQALSDAIDDNFGSFEKFKSDLITAA 119
+ L + + + H++FW M G GK ++D I+ FGSFEKFK + AA
Sbjct: 76 VLRD--LSFHLNGHILHSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQAA 133
Query: 120 STQFGSGWGWLSVKN--GKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177
G GW L + +L I + + A +L +DVWEHAYYL +K R Y
Sbjct: 134 KNVEGVGWAILVYEPLEEQLLILQIEKHNLMHAADAQVLLALDVWEHAYYLQYKNDRGSY 193
Query: 178 IESFITNLVNWEYVCERYETAMLAQ 202
++++ N+VNW+ V R + A+ Q
Sbjct: 194 VDNWW-NVVNWDDVERRLQKALNGQ 217
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer,
oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP:
a.2.11.1 d.44.1.1
Length = 221
Score = 200 bits (510), Expect = 2e-52
Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 6/201 (2%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
+ LP LPY YD L PY+S++ +E HH HH+ Y + + + + K
Sbjct: 14 QQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEA--TDVPKL 71
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQ---ALSDAIDDNFGSFEKFKSDLIT 117
+ N + NH+LFW + G L AI+ +GSF+KFK T
Sbjct: 72 VSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNT 131
Query: 118 AASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177
GSGWGWL K ++ T + + GA P+ G+D+WEHAYYL + +A Y
Sbjct: 132 TLLGIQGSGWGWLVTDGPKGKLDITTTHDQDPVTGAAPVFGVDMWEHAYYLQYLNDKASY 191
Query: 178 IESFITNLVNWEYVCERYETA 198
+ N++NW RY
Sbjct: 192 AKGIW-NVINWAEAENRYIAG 211
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase,
thermophIle, reactive oxygen species, cyanobacteria,
SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP:
a.2.11.1 d.44.1.1
Length = 199
Score = 199 bits (507), Expect = 4e-52
Identities = 90/199 (45%), Positives = 129/199 (64%), Gaps = 4/199 (2%)
Query: 3 FKLPNLPYSYDDLSPY-MSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSH 61
F LP+ L PY MS +TLE+H+ HHK Y DN KL D E+ SLE++I ++
Sbjct: 2 FVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTY 61
Query: 62 GS--NAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAA 119
G G+FNNA+Q +NH FW +K G ++ I+ FGS+++FK+ AA
Sbjct: 62 GDAAKVGIFNNAAQVWNHTFFWNSLKPGGGG-VPTGDVAARINSAFGSYDEFKAQFKNAA 120
Query: 120 STQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
+TQFGSGW WL ++ G L+++KT NAENPL++G +P+L IDVWEHAYYLD++ RR +I+
Sbjct: 121 ATQFGSGWAWLVLEAGTLKVTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNRRPDFID 180
Query: 180 SFITNLVNWEYVCERYETA 198
+F+ LVNW++V + A
Sbjct: 181 NFLNQLVNWDFVAKNLAAA 199
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP:
a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A
Length = 207
Score = 199 bits (506), Expect = 4e-52
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
++ LP+L + Y L P++S + E HH HH Y A A++ +E
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
+ L N + + NH ++W + N G K L+ AI D FGSF+KF++ AA+
Sbjct: 60 LLNEKNLAFNLAGHVNHTIWWKNLSPN-GGDKPTGELAAAIADAFGSFDKFRAQFHAAAT 118
Query: 121 TQFGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYI 178
T GSGW L KL I + + + G +P+L +D+WEHA+YL +K + +
Sbjct: 119 TVQGSGWAALGWDTLGNKLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFA 178
Query: 179 ESFITNLVNWEYVCERYETA 198
++F N+VNW V RY A
Sbjct: 179 KAFW-NVVNWADVQSRYAAA 197
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide
acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1
d.44.1.1 PDB: 3mds_A
Length = 203
Score = 199 bits (506), Expect = 5e-52
Identities = 75/204 (36%), Positives = 108/204 (52%), Gaps = 8/204 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
FKLP+L Y Y+ L P++ +T+E HH HH Y N LH E++++
Sbjct: 2 YPFKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRH 61
Query: 61 H-----GSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDL 115
+ NN + NH+LFW + + L AID+ FG F+ K L
Sbjct: 62 LAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGA-KEPVGELKKAIDEQFGGFQALKEKL 120
Query: 116 ITAASTQFGSGWGWLSVKN-GKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRR 174
AA +FGSGW WL GKL + T N +NP++ G PI+GIDVWEHAYYL ++ RR
Sbjct: 121 TQAAMGRFGSGWAWLVKDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRR 180
Query: 175 AHYIESFITNLVNWEYVCERYETA 198
A Y+++ N++NW+ E ++ A
Sbjct: 181 ADYLQAIW-NVLNWDVAEEFFKKA 203
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding,
oxidoreductase, metal binding protein; 1.80A
{Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A
2aw9_A
Length = 211
Score = 198 bits (504), Expect = 7e-52
Identities = 92/211 (43%), Positives = 125/211 (59%), Gaps = 14/211 (6%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIK- 59
M + LP LPY+YD L P++ T+E HH HH+ Y DNA K E L +E++I +
Sbjct: 1 MAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQL 60
Query: 60 ---SHGSNAGLFNNASQYYNHNLFWACM---KKNDGKGKVPQALSDAIDDNFGSFEKFKS 113
L NNA + NH++FW M + +G + L DAI+ FGSF+ FK
Sbjct: 61 DRVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQ 120
Query: 114 DLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYY 167
AA T+FGSGW WL VK+GKL++ T N +NPL+ AI PILG+DVWEHAYY
Sbjct: 121 KFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 180
Query: 168 LDFKYRRAHYIESFITNLVNWEYVCERYETA 198
L+++ RR Y+ +F N+VNW+ V +RY A
Sbjct: 181 LNYQNRRPDYLAAFW-NVVNWDEVSKRYAAA 210
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide
inactivation, oxidoreductase; 2.60A
{Methanothermobacterthermautotrophicus} SCOP: a.2.11.1
d.44.1.1
Length = 205
Score = 197 bits (501), Expect = 2e-51
Identities = 69/200 (34%), Positives = 110/200 (55%), Gaps = 6/200 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
++LP LPY YD L P++S+E L HH HH+ Y D A L + S ++ IK+
Sbjct: 9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKA-- 66
Query: 63 SNAGLFNNASQYYNHNLFWACMKK-NDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAST 121
+ L + Y H FW M ++ G+ L++ I+ +FGSFE+F+ + AA +
Sbjct: 67 ALKELSFHVGGYVLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAIS 126
Query: 122 QFGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
GSGW L+ + +L I + + +I +L +DVWEHAYY+D++ R Y+E
Sbjct: 127 AEGSGWAVLTYCQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVE 186
Query: 180 SFITNLVNWEYVCERYETAM 199
+F N+VNW+ V +R+E +
Sbjct: 187 AFW-NIVNWKEVEKRFEDIL 205
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A
{Bacillus anthracis}
Length = 217
Score = 196 bits (499), Expect = 3e-51
Identities = 79/206 (38%), Positives = 116/206 (56%), Gaps = 7/206 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIKSH 61
F+LP L Y YD+L PY+ TL HH HH Y +N L + +E+ + SLEE++
Sbjct: 13 FQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLE 72
Query: 62 GSN----AGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLIT 117
+ NN +Y H+LFW M G G+ ++ ID F +F+ K L
Sbjct: 73 TLPKEIVTAVRNNGGGHYCHSLFWEVMS-PRGGGEPNGDVAKVIDYYFNTFDNLKDQLSK 131
Query: 118 AASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177
AA ++FGSG+GWL + +L + T N + PL G IP+L IDVWEHAYYL ++ RR +
Sbjct: 132 AAISRFGSGYGWLVLDGEELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRRPEF 191
Query: 178 IESFITNLVNWEYVCERYETAMLAQK 203
+ ++ + VNW+ V E+Y A+ +QK
Sbjct: 192 VTNWW-HTVNWDRVNEKYLQAIQSQK 216
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F
mutant, hydrogen bond, reactivity, ultra-high
resolution, oxidoreductase; 0.90A {Escherichia coli}
SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A
1mmm_A 1vew_A 1en5_A 1en4_A 1i08_A 1en6_A
Length = 205
Score = 192 bits (490), Expect = 3e-50
Identities = 87/207 (42%), Positives = 123/207 (59%), Gaps = 15/207 (7%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIKSH 61
+ LP+LPY+YD L P+ K+T+E HH HH+ Y +NA L S E +L +EE+I K
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLD 61
Query: 62 GSNAG----LFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLIT 117
A L NNA + NH+LFW +KK + L AI+ +FGS + FK++
Sbjct: 62 QLPADKKTVLRNNAGGHANHSLFWKGLKKG---TTLQGDLKAAIERDFGSVDNFKAEFEK 118
Query: 118 AASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYYLDFK 171
AA+++FGSGW WL +K KL + T N ++PL+ AI PI+G+DVWEHAY+L F+
Sbjct: 119 AAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYFLKFQ 178
Query: 172 YRRAHYIESFITNLVNWEYVCERYETA 198
RR YI+ F N+VNW+ R+
Sbjct: 179 NRRPDYIKEFW-NVVNWDEAAARFAAK 204
>3bfr_A Superoxide dismutase [MN]; alpha/beta fold, manganese,
metal-binding, mitochondrion, oxidoreductase, transit
peptide; 2.05A {Saccharomyces cerevisiae}
Length = 215
Score = 191 bits (486), Expect = 1e-49
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
LP+L + + L PY+S + E H+ HH+ Y + + L L + ++
Sbjct: 10 VTLPDLKWDFGALEPYISGQINELHYTKHHQTYVNGFNTAVDQFQELSDLLAKEPSPANA 69
Query: 63 SN-----AGLFNNASQYYNHNLFWACMKKN-DGKGKVPQ-ALSDAIDDNFGSFEKFKSDL 115
+ + + NH LFW + G G+ P AL+ AID+ FGS ++
Sbjct: 70 RKMIAIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLT 129
Query: 116 ITAASTQFGSGWGWLSV---KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKY 172
T + GSGW ++ GKL++ +T N + + +P++ ID WEHAYYL ++
Sbjct: 130 NTKLAGVQGSGWAFIVKNLSNGGKLDVVQTYNQ-DTVTGPLVPLVAIDAWEHAYYLQYQN 188
Query: 173 RRAHYIESFITNLVNWEYVCERYETA 198
++A Y ++ N+VNW+ R++
Sbjct: 189 KKADYFKAIW-NVVNWKEASRRFDAG 213
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C
domain, oxidoreductase, manganese, metal-binding,
mitochondrion; 1.70A {Caenorhabditis elegans} PDB:
3dc6_A
Length = 195
Score = 191 bits (485), Expect = 1e-49
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 5/199 (2%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
M LP+LP+ Y DL P +S E ++ HH HH Y +N ++ + + + ++
Sbjct: 1 MKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEK--LHEAVSKGNLKEA 58
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
L N + NH++FW + K+ G+ + L D I +FGS + + L
Sbjct: 59 IALQPALKFNGGGHINHSIFWTNLAKD--GGEPSKELMDTIKRDFGSLDNLQKRLSDITI 116
Query: 121 TQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIES 180
GSGWGWL + A + G +P+ GIDVWEHAYYL +K R Y+ +
Sbjct: 117 AVQGSGWGWLGYCKKDKILKIATCANQDPLEGMVPLFGIDVWEHAYYLQYKNVRPDYVHA 176
Query: 181 FITNLVNWEYVCERYETAM 199
+ NW+ + ER+ A
Sbjct: 177 IW-KIANWKNISERFANAR 194
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase,
manganese, metal- binding, oxidoreductase,
phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A
1jr9_A
Length = 202
Score = 190 bits (484), Expect = 2e-49
Identities = 85/203 (41%), Positives = 118/203 (58%), Gaps = 7/203 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIK 59
M ++LP LPY+YD L P++ KET+ HH HH Y N K + + + + S+EE++
Sbjct: 1 MAYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVAD 60
Query: 60 ----SHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDL 115
+ NN + NH LFW + +G G+ AL++ I+ FGSF+KFK
Sbjct: 61 LDSVPENIRTAVRNNGGGHANHKLFWTLLS-PNGGGEPTGALAEEINSVFGSFDKFKEQF 119
Query: 116 ITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRA 175
+FGSGW WL V NGKLEI+ T N ++PL G PILG+DVWEHAYYL+++ RR
Sbjct: 120 XXXXXGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRP 179
Query: 176 HYIESFITNLVNWEYVCERYETA 198
YI +F N+VNW+ V Y
Sbjct: 180 DYISAFW-NVVNWDEVARLYSER 201
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A
{Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A
1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A
3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A*
1zsp_A 1n0n_A 2p4k_A ...
Length = 198
Score = 189 bits (481), Expect = 4e-49
Identities = 70/199 (35%), Positives = 102/199 (51%), Gaps = 7/199 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
LP+LPY Y L P+++ + ++ HH HH Y +N ++ + + +
Sbjct: 2 HSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN--VTEEKYQEALAKGDVTAQIA 59
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122
L N + NH++FW + N G G+ L +AI +FGSF+KFK L A+
Sbjct: 60 LQPALKFNGGGHINHSIFWTNLSPN-GGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGV 118
Query: 123 FGSGWGWLSV-KNGKLEISKTQNAENPL--INGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
GSGWGWL K ++PL G IP+LGIDVWEHAY+L +K R Y++
Sbjct: 119 QGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLK 178
Query: 180 SFITNLVNWEYVCERYETA 198
+ N++NWE V ERY
Sbjct: 179 AIW-NVINWENVTERYMAC 196
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal
stability, psychrophilic protein, metal-binding,
oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas
haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A
Length = 192
Score = 188 bits (479), Expect = 7e-49
Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 7/195 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
F+LP+LPY+ D L P++SKETLE+HH HH Y L + + SLEEI+
Sbjct: 2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIV---CS 58
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122
S+ G+FNNA+Q +NH +W + N G G A++DAI+ +GSF+ FK L A
Sbjct: 59 SDGGVFNNAAQIWNHTFYWNSLSPN-GGGAPTGAVADAINAKWGSFDAFKEALNDKAVNN 117
Query: 123 FGSGWGWL-SVKNGKLEISKTQNAENPLI-NGAIPILGIDVWEHAYYLDFKYRRAHYIES 180
FGS W WL + +G L+I T NA PL +G PIL +D+WEHAYY+D++ R Y++
Sbjct: 118 FGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKG 177
Query: 181 FITNLVNWEYVCERY 195
F +LVNWE+ +
Sbjct: 178 FW-SLVNWEFANANF 191
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics
center for infectious disease, GRAM-negative bacteria;
1.95A {Anaplasma phagocytophilum HZ}
Length = 227
Score = 188 bits (477), Expect = 1e-48
Identities = 85/207 (41%), Positives = 122/207 (58%), Gaps = 12/207 (5%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHL---SLEEII 57
F+L +LPY + L PY+S L+ H++ HHK Y D KL E L SL +I+
Sbjct: 21 SMFELSDLPY--EGLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIV 78
Query: 58 IKSHGSNA---GLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSD 114
+K+H S + +FNNA+Q +NH+ +W MK N G G P+ L + I+ +FGS E F +
Sbjct: 79 VKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPN-GGGNPPEKLREMIEHSFGSVEGFNNA 137
Query: 115 LITAASTQFGSGWGWLSVKNG--KLEISKTQNAENPL-INGAIPILGIDVWEHAYYLDFK 171
T+ QFGSGW WL L++ T NA++PL G +P+ +DVWEHAYYLD+
Sbjct: 138 FTTSGLGQFGSGWVWLVYDEDAKALKVVSTANADSPLLTQGQLPLATMDVWEHAYYLDYL 197
Query: 172 YRRAHYIESFITNLVNWEYVCERYETA 198
R YI+ F+ +L+NW++V R E A
Sbjct: 198 NLRKKYIDVFLEHLLNWDFVLGRLEDA 224
>1y67_A Mnsod, manganese superoxide dismutase; manganese enzyme,
metalloprotein, oxidoreductase; 1.85A {Deinococcus
radiodurans} SCOP: a.2.11.1 d.44.1.1 PDB: 2aw9_A 2cdy_A
2ce4_A
Length = 229
Score = 187 bits (476), Expect = 1e-48
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 14/216 (6%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIK- 59
+ LP LPY+YD L P++ T+E HH HH+ Y DNA K E L +E++I +
Sbjct: 2 AAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQL 61
Query: 60 ---SHGSNAGLFNNASQYYNHNLFWACM---KKNDGKGKVPQALSDAIDDNFGSFEKFKS 113
L NNA + NH++FW M + +G + L DAI+ FGSF+ FK
Sbjct: 62 DRVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQ 121
Query: 114 DLITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYY 167
AA T+FGSGW WL VK+GKL++ T N +NPL+ AI PILG+DVWEHAYY
Sbjct: 122 KFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYY 181
Query: 168 LDFKYRRAHYIESFITNLVNWEYVCERYETAMLAQK 203
L+++ RR Y+ +F N+VNW+ V +RY A L +
Sbjct: 182 LNYQNRRPDYLAAFW-NVVNWDEVSKRYAAAKLVPR 216
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus
marinus}
Length = 280
Score = 185 bits (471), Expect = 5e-48
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 6/197 (3%)
Query: 8 LPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGL 67
LPY + L P +S T+++H++ HH+ Y L E + + + +
Sbjct: 84 LPYGLEALEPVISAATVDFHYNKHHQGYIQKLLDATGLPESRINLKSLVTLGPDRAGENV 143
Query: 68 FNNASQYYNHNLFWACMKK-NDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSG 126
FN A Q YNHN++W M + VP L I +G+ ++ K + + A+ FGSG
Sbjct: 144 FNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSG 203
Query: 127 WGWLSVK--NGKLEISKTQNAENPL--INGAIPILGIDVWEHAYYLDFKYRRAHYIESFI 182
W WL +L++ T++A +PL G IP+ DVWEHAYYLD+++ RA Y+ +
Sbjct: 204 WIWLVWDTRERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYYLDYQHDRAAYLTRWW 263
Query: 183 TNLVNWEYVCERYETAM 199
+L+NWE+ + +
Sbjct: 264 -SLINWEFADSNLPSDI 279
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic,
metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1
d.44.1.1
Length = 238
Score = 185 bits (471), Expect = 5e-48
Identities = 95/218 (43%), Positives = 124/218 (56%), Gaps = 21/218 (9%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
F+L PY + L P MS++TLE+H HH+ Y +N K E+ SLEEII+ +
Sbjct: 17 AKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSLEEIIVTA 76
Query: 61 --HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITA 118
G FNNA+Q +NH+ FW CMK G GK L + I+ +FGSFEKF + A
Sbjct: 77 YNKGDILPAFNNAAQVWNHDFFWECMKPG-GGGKPSGELLELIERDFGSFEKFLDEFKAA 135
Query: 119 ASTQFGSGWGWLSV-----------------KNGKLEISKTQNAENPLI-NGAIPILGID 160
A+TQFGSGW WL+ ++ KL + K+ NA NPL+ G P+L ID
Sbjct: 136 AATQFGSGWAWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLTID 195
Query: 161 VWEHAYYLDFKYRRAHYIESFITNLVNWEYVCERYETA 198
VWEHAYYLDF+ RR YI F+ LV+W+ V R E A
Sbjct: 196 VWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQA 233
>1dt0_A Superoxide dismutase; pseudomonas ovalis; 2.10A {Pseudomonas
putida} SCOP: a.2.11.1 d.44.1.1 PDB: 3sdp_A
Length = 197
Score = 183 bits (466), Expect = 2e-47
Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
F+LP LPY++D L P++SKETLE+HHD HH Y N L E +LEEI+ S G
Sbjct: 2 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTSSG 61
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122
G+FNNA+Q +NH +W C+ N G+ AL+DAI+ FGSF+KFK + +
Sbjct: 62 ---GIFNNAAQVWNHTFYWNCLSPN-AGGQPTGALADAINAAFGSFDKFKEEFTKTSVGT 117
Query: 123 FGSGWGWLSV-KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESF 181
FGSGWGWL +G L ++ T A PL G P+L DVWEHAYY+D++ R Y+E+F
Sbjct: 118 FGSGWGWLVKKADGSLALASTIGAGCPLTIGDTPLLTCDVWEHAYYIDYRNLRPKYVEAF 177
Query: 182 ITNLVNWEYVCERYETA 198
NLVNW +V E++E
Sbjct: 178 W-NLVNWAFVAEQFEGK 193
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus
marinus}
Length = 226
Score = 178 bits (451), Expect = 1e-45
Identities = 83/196 (42%), Positives = 117/196 (59%), Gaps = 4/196 (2%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
F+ P LPY + L P+MS ETL YHHD HH+ Y D +A++ + E IIK+
Sbjct: 33 FQCPPLPYVKNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTLEQIIKTE- 91
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122
FN A+Q YNH F+ + N G G+ +++ I +FGSFEKFK D AA
Sbjct: 92 -TGKPFNQAAQVYNHTFFFNNLAPN-GGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGH 149
Query: 123 FGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESFI 182
FGSGW WL +GKL+I + +A NP+ P++ IDVWEHAYY+D++ RA Y++++
Sbjct: 150 FGSGWVWLIADDGKLKIVQGHDAGNPIRESKTPLMNIDVWEHAYYIDYRNARAQYVKNYW 209
Query: 183 TNLVNWEYVCERYETA 198
NLVNW++V + A
Sbjct: 210 -NLVNWDFVNDNVAKA 224
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod,
oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1
d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A
Length = 192
Score = 177 bits (450), Expect = 2e-45
Identities = 86/195 (44%), Positives = 115/195 (58%), Gaps = 6/195 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
F+LP LPY+ D L+P++S ET+EYH+ HH+ Y N L SLEEII S G
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEG 61
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQ 122
G+FNNA++ +NH +W C+ N G+ +++AI +FGSF FK+ AA
Sbjct: 62 ---GVFNNAAEVWNHTFYWNCLAPN-AGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKN 117
Query: 123 FGSGWGWLSVKNG-KLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESF 181
FGSGW WL + KL I T NA PL A P+L +DVWEHAYY+D++ R Y+E F
Sbjct: 118 FGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHF 177
Query: 182 ITNLVNWEYVCERYE 196
LVNWE+V +
Sbjct: 178 W-ALVNWEFVAKNLA 191
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic,
oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP:
a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A
Length = 191
Score = 171 bits (435), Expect = 7e-44
Identities = 93/196 (47%), Positives = 121/196 (61%), Gaps = 6/196 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
M +L +LPY+ D L+P +SKET+E+HH H K Y DN KL E + L I+ KS
Sbjct: 1 MTHELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLNTIVQKS 60
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
G G+FNNA Q NHNL++ + G G L +AID FGSFEKFK + TA +
Sbjct: 61 EG---GIFNNAGQTLNHNLYFTQFRPGKG-GAPKGKLGEAIDKQFGSFEKFKEEFNTAGT 116
Query: 121 TQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
T FGSGW WL+ NGKL I K NA NP+ G P+LG DVWEHAYYL ++ RRA +++
Sbjct: 117 TLFGSGWVWLASDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLK 176
Query: 180 SFITNLVNWEYVCERY 195
++V+W+ V RY
Sbjct: 177 DLW-SIVDWDIVESRY 191
>2awp_A Iron super-oxide dismutase; structural genomics, structural
genomics consortium, SGC, oxidoreductase; 2.00A
{Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A
Length = 198
Score = 171 bits (434), Expect = 9e-44
Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 7/201 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
M LP L Y+ + LSP++S+ETL +H++ HH Y + L D SL EI+ +S
Sbjct: 1 MAIILPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIMKES 60
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
G+ FNNA+Q +NH+ +W M N G G+ + + I ++FGSF FK++
Sbjct: 61 TGAI---FNNAAQIWNHSFYWDSMGPNCG-GEPHGEIKEKIQEDFGSFNNFKNEFSNVLC 116
Query: 121 TQFGSGWGWLSV-KNGKLEISKTQNAENPLING-AIPILGIDVWEHAYYLDFKYRRAHYI 178
FGSGWGWL + N KL I +T +A NP+ + IPIL D+WEHAYY+D++ R Y+
Sbjct: 117 GHFGSGWGWLVLNNNNKLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRNDRPSYV 176
Query: 179 ESFITNLVNWEYVCERYETAM 199
+++ NLVNW + E + A+
Sbjct: 177 KAWW-NLVNWNFANENLKKAL 196
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium
freudenreichiisubsp} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A
1ar5_A 1bs3_A 1avm_A 1bt8_A
Length = 201
Score = 163 bits (412), Expect = 3e-41
Identities = 70/202 (34%), Positives = 102/202 (50%), Gaps = 6/202 (2%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
+ LP LPY Y L PY+S E +E HHD HHK Y D A + I
Sbjct: 3 YTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTALDKLAEARDKADFGAINKL- 61
Query: 63 SNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITAAST 121
L N + + NH++FW M + P L AID+ FGSF+ K+ AA+
Sbjct: 62 -EKDLAFNLAGHVNHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATG 120
Query: 122 QFGSGWGWLSV--KNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
GSGW L ++ + + +N L G+IP+L +D+WEHA+YL +K + Y++
Sbjct: 121 IQGSGWASLVWDPLGKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVK 180
Query: 180 SFITNLVNWEYVCERYETAMLA 201
S+ N+VNW+ V R+ A +A
Sbjct: 181 SWW-NVVNWDDVALRFSEARVA 201
>1b06_A Protein (superoxide dismutase); 2.20A {Sulfolobus acidocaldarius}
SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A
Length = 210
Score = 159 bits (403), Expect = 4e-40
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 5/203 (2%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIK 59
++ P LPY D L PY+SK+ ++ H++ HHK Y + A L +++ L +
Sbjct: 7 KRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYD 66
Query: 60 SHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITA 118
G GL N + + H ++W M G P AL+D ID +GSF++FK +
Sbjct: 67 LQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSES 126
Query: 119 ASTQFGSGWGWL--SVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAH 176
A++ GSGW L ++G L+I +N I IL +D +EHAYYL +K +R
Sbjct: 127 ANSLPGSGWTVLYYDNESGNLQIMTVENHFMNHIAELPVILIVDEFEHAYYLQYKNKRGD 186
Query: 177 YIESFITNLVNWEYVCERYETAM 199
Y+ ++ N+VNW+ +R + +
Sbjct: 187 YLNAWW-NVVNWDDAEKRLQKYL 208
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structural
genomics, national institute of allergy and infectious
diseases; 1.90A {Francisella tularensis subsp}
Length = 195
Score = 157 bits (398), Expect = 1e-39
Identities = 86/197 (43%), Positives = 114/197 (57%), Gaps = 7/197 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
M F+LP LPY+ D L +SKET+EYH+ HH+ Y N L E +LEEI+
Sbjct: 4 MKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIV--- 60
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
SN G+FNNA+Q +NH +W C+ N K + L A+ + FGS E FK AA
Sbjct: 61 KTSNGGIFNNAAQVFNHTFYWNCLTPN--KTEASSQLKAALIETFGSVENFKEQFSKAAI 118
Query: 121 TQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
FGSGW WL GKLEI T NA PL P+L DVWEHAYY+D++ R Y+E
Sbjct: 119 ATFGSGWAWLVKNTEGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYYIDYRNARPKYVE 178
Query: 180 SFITNLVNWEYVCERYE 196
+ ++VNW++V E++
Sbjct: 179 ALW-DIVNWQFVSEQFA 194
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex
pyrophilus} SCOP: a.2.11.1 d.44.1.1
Length = 212
Score = 149 bits (376), Expect = 5e-37
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 6/206 (2%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
KL + +S E +E H + H+K Y ++ + + +++
Sbjct: 3 HKLEPKDHLKPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYS 62
Query: 63 S----NAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITA 118
N H L++ + KG+ +AL I+++ G + ++L A
Sbjct: 63 EYRELKVEETFNYMGVVLHELYFGMLTPGG-KGEPSEALKKKIEEDIGGLDACTNELKAA 121
Query: 119 ASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYI 178
A G L + +G+L ++ + G IP++ ID +EHAYY+D+K +R YI
Sbjct: 122 AMAFRGWAILGLDIFSGRLVVNGLDAHNVYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYI 181
Query: 179 ESFITNLVNWEYVCERYETAMLAQKV 204
++F +NW+ V ER+E AM A +
Sbjct: 182 DAFF-KNINWDVVNERFEKAMKAYEA 206
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase;
1.90A {Trypanosoma cruzi} PDB: 3esf_A
Length = 194
Score = 148 bits (373), Expect = 1e-36
Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 8/196 (4%)
Query: 3 FKLPNLPYSYDDLSPY-MSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSH 61
F +P LP+ YD L+ +SK+ + H+D HH+ Y A L E II
Sbjct: 2 FSIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEII--R 59
Query: 62 GSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAST 121
+FN A+Q +NH F+ +G G+ ++D I+ +FGSF KFK + A
Sbjct: 60 TEKGPIFNLAAQIFNH-TFYWESMCPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVG 118
Query: 122 QFGSGWGWLSV--KNGKLEISKTQNAENPLINGA-IPILGIDVWEHAYYLDFKYRRAHYI 178
FGSGW WL +GKL++ +T +A PL P+L DVWEHAYY+D+K RA Y+
Sbjct: 119 HFGSGWAWLVKDTNSGKLKVYQTHDAGCPLTEPNLKPLLTCDVWEHAYYVDYKNDRAAYV 178
Query: 179 ESFITNLVNWEYVCER 194
++F N+VNW+ V +
Sbjct: 179 QTFW-NVVNWKNVERQ 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.6 bits (78), Expect = 0.015
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 6/24 (25%)
Query: 3 FKLPNLPYSYDDLSPYMS-KETLE 25
KL Y+ DD +P ++ K T+E
Sbjct: 29 LKL----YA-DDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 0.90
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 33 KNYADN-ALKLASDAEM 48
K YAD+ A LA A M
Sbjct: 30 KLYADDSAPALAIKATM 46
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
PSI-2, protein structure initiative; 1.60A {Thermobifida
fusca YX} PDB: 2qvh_A*
Length = 327
Score = 27.1 bits (59), Expect = 2.6
Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 22/160 (13%)
Query: 28 HDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLFW------ 81
DV+ D A+++ + L E + A + S +
Sbjct: 129 IDVNGAWDVDTAVRMIRLLDRFELEYVEQPCATVDELAEVRRRVSVPIAADESIRRAEDP 188
Query: 82 ----------ACMKKNDGKGKVPQALSDAIDDNFGS--FEKFKSDLITAASTQFGSGWGW 129
+ K G V AL A + ++ + AA +
Sbjct: 189 LRVRDAEAADVVVLKVQPLGGVRAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPE 248
Query: 130 LSVKNGKLEISKTQN--AENPLI--NGAIPILGIDVWEHA 165
L G + ++PL+ +G +P+ +DV E
Sbjct: 249 LPYACGLATLRLLHADVCDDPLLPVHGVLPVRRVDVSEQR 288
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 27.2 bits (60), Expect = 2.8
Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 56/199 (28%)
Query: 33 KNYADNALKLASDAEMLHLSLEEII--IKSHG------SNAGLFNNASQYYNHNLFWACM 84
+NY+ + D + L E+I I H S GL + A+Q+ L M
Sbjct: 1686 ENYSAMIFETIVDGK---LKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPAL--TLM 1739
Query: 85 KK---ND--GKGKVPQALSDAI--DDNFGSFEKFKS--DLITAAS--------------- 120
+K D KG +P +DA + G + S D+++ S
Sbjct: 1740 EKAAFEDLKSKGLIP---ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 121 ---TQFG-SGWGWLSVKNGKLEISKTQNAENPLINGA-------IPILGIDVWEHAYYLD 169
+ G S +G +++ G++ S +Q A ++ + I+ +V E+ Y+
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV-ENQQYVA 1855
Query: 170 FKYRRAHYIESFITNLVNW 188
RA +++ +TN++N+
Sbjct: 1856 AGDLRA--LDT-VTNVLNF 1871
>3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics,
joint center for structural genomics, JCSG; 2.60A
{Deinococcus geothermalis dsm 11300}
Length = 423
Score = 26.3 bits (57), Expect = 5.6
Identities = 6/48 (12%), Positives = 16/48 (33%)
Query: 46 AEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKV 93
A L + E +++ ++ S + H + + K+
Sbjct: 80 AGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKM 127
>3kby_A Putative uncharacterized protein; all helical, unknown funct; 1.80A
{Staphylococcus aureus}
Length = 145
Score = 25.8 bits (56), Expect = 7.0
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 137 LEISKTQNAENPLINGAIPILGI-------DVWEHAYYLDFKYRRAHYIESFITNLVNWE 189
L I + +NP+++GA IL + DV+E + Y E+ + + +
Sbjct: 39 LLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQ 98
Query: 190 YV 191
Y+
Sbjct: 99 YL 100
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.133 0.410
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,874,470
Number of extensions: 82252
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 43
Length of query: 205
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 117
Effective length of database: 3,559,758
Effective search space: 416491686
Effective search space used: 416491686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)