HHsearch alignment for GI: 254780496 and conserved domain: TIGR01201

>TIGR01201 HU_rel DNA-binding protein, putative; InterPro: IPR005902 This family of proteins is related to, but longer than, DNA-binding protein HU. It contains a distinctive domain architecture when compared to HU and related histone-like DNA-binding. Members include, so far, a protein from Bacteroides fragilis and ten from Porphyromonas gingivalis (Bacteroides gingivalis). Both species are oral pathogens. .
Probab=98.25  E-value=3.5e-06  Score=59.41  Aligned_cols=83  Identities=17%  Similarity=0.294  Sum_probs=68.2

Q ss_pred             CCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCC---EEEE--
Q ss_conf             8766-699999999997199999999999999999999975599600004169998502676430688988---8995--
Q gi|254780496|r    2 SKTI-TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ---EVKI--   75 (114)
Q Consensus         2 ~~~m-tK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge---~i~i--   75 (114)
T Consensus        30 ~~~~~~~~~~~~~ia~~S~~s~GDV~~i~~~L~~~l~~eL~~G~~v~lg~~G~FR~~~~-~kg-~~ve~~eGGt~v~~~~  107 (198)
T TIGR01201        30 SGDVVDFEEIAELIAEESSLSPGDVKGILDRLAYVLRRELASGKTVRLGEIGTFRLSAT-AKG-SGVEEAEGGTEVSAEQ  107 (198)
T ss_pred             CCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEE-ECC-CCCCCCCCCCCCCHHH
T ss_conf             77625378999998676468856899999999999999713798698747325899861-032-4364667782116765


Q ss_pred             CCCCEEEECCC
Q ss_conf             68853776169
Q gi|254780496|r   76 DPRRVVVFKAS   86 (114)
Q Consensus        76 p~k~~v~Fkps   86 (114)
T Consensus       108 ~~~~rv~F~p~  118 (198)
T TIGR01201       108 VKKARVLFTPE  118 (198)
T ss_pred             HCCCCEEECCC
T ss_conf             21222154223