HHsearch alignment for GI: 254780496 and conserved domain: TIGR01201
>TIGR01201 HU_rel DNA-binding protein, putative; InterPro: IPR005902 This family of proteins is related to, but longer than, DNA-binding protein HU. It contains a distinctive domain architecture when compared to HU and related histone-like DNA-binding. Members include, so far, a protein from Bacteroides fragilis and ten from Porphyromonas gingivalis (Bacteroides gingivalis). Both species are oral pathogens. .
Probab=98.25 E-value=3.5e-06 Score=59.41 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=68.2
Q ss_pred CCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCC---EEEE--
Q ss_conf 8766-699999999997199999999999999999999975599600004169998502676430688988---8995--
Q gi|254780496|r 2 SKTI-TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ---EVKI-- 75 (114)
Q Consensus 2 ~~~m-tK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge---~i~i-- 75 (114)
T Consensus 30 ~~~~~~~~~~~~~ia~~S~~s~GDV~~i~~~L~~~l~~eL~~G~~v~lg~~G~FR~~~~-~kg-~~ve~~eGGt~v~~~~ 107 (198)
T TIGR01201 30 SGDVVDFEEIAELIAEESSLSPGDVKGILDRLAYVLRRELASGKTVRLGEIGTFRLSAT-AKG-SGVEEAEGGTEVSAEQ 107 (198)
T ss_pred CCCEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEE-ECC-CCCCCCCCCCCCCHHH
T ss_conf 77625378999998676468856899999999999999713798698747325899861-032-4364667782116765
Q ss_pred CCCCEEEECCC
Q ss_conf 68853776169
Q gi|254780496|r 76 DPRRVVVFKAS 86 (114)
Q Consensus 76 p~k~~v~Fkps 86 (114)
T Consensus 108 ~~~~rv~F~p~ 118 (198)
T TIGR01201 108 VKKARVLFTPE 118 (198)
T ss_pred HCCCCEEECCC
T ss_conf 21222154223