HHsearch alignment for GI: 254780496 and conserved domain: smart00411
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=99.93 E-value=1.1e-25 Score=178.92 Aligned_cols=90 Identities=32% Similarity=0.605 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
T Consensus 1 MtK~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~~v~i~~fG~F~~~~~~~R~grNP~Tge~i~i~~~~~v~Fk 80 (90)
T smart00411 1 MTKSELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKGEKVELRGFGTFEVRERKAREGRNPKTGEEIEIPAKKVPKFK 80 (90)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEEEECCEEEECCCCCCEEEECCCCCEEEC
T ss_conf 97899999999986969999999999999999999967993993404999999706613478799988997587657980
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999973
Q gi|254780496|r 85 ASSILKKRIM 94 (114)
Q Consensus 85 psk~Lk~~in 94 (114)
T Consensus 81 ~sk~lk~~iN 90 (90)
T smart00411 81 PGKALKDAVN 90 (90)
T ss_pred CCHHHHHHHC
T ss_conf 6989998639