HHsearch alignment of GI: 254780496 and MMDB domain: 1p71_A_
>1p71_A (A:) DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP}
Probab=99.93 E-value=2e-25 Score=177.03 Aligned_cols=92 Identities=21% Similarity=0.520 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++++++.+++.++++|+++|.++|.+|+.|+|+|||+|+++.+++|.++||+|||.+.||++++|+|+
T Consensus 1 MtK~eli~~ia~~~~ls~~~v~~~i~~~~~~i~~~L~~~~~V~l~~fG~F~v~~~~~r~~~Np~Tge~i~i~~~~~v~Fk 80 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFS 80 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEEECCCEEECCCCCCEEEECCCCCEEEE
T ss_conf 98899999999845979999999999999999999864886050352699999836723289799978996487408995
Q ss_pred CCHHHHHHHHHH
Q ss_conf 698999997311
Q gi|254780496|r 85 ASSILKKRIMDD 96 (114)
Q Consensus 85 psk~Lk~~in~~ 96 (114)
||+.|+++||+.
T Consensus 81 psk~lk~~in~~ 92 (94)
T 1p71_A 81 AGKLFREKVAPP 92 (94)
T ss_dssp ECHHHHHHHSCC
T ss_pred CCHHHHHHHCCC
T ss_conf 498999975778