HHsearch alignment of GI: 254780496 and MMDB domain: 3c4i_A_

>3c4i_A (A:) DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.92  E-value=4.6e-25  Score=174.78  Aligned_cols=96  Identities=23%  Similarity=0.508  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+|||..||+++|+++.++..+|++|+++|.++|.+|+.|+|+|||+|+++.+++|.++||+|||.+.||++++|+|+
T Consensus         1 Mtk~eli~~ia~~~~~s~~~v~~~i~~~~~~i~~~L~~g~~V~l~~fG~F~~~~~~~r~~~np~T~e~i~i~~k~~v~Fk   80 (99)
T 3c4i_A            1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR   80 (99)
T ss_dssp             CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf             97899999999874989999999999999999999964996131556899998756811068599988986387228996


Q ss_pred             CCHHHHHHHHHHHCCC
Q ss_conf             6989999973111013
Q gi|254780496|r   85 ASSILKKRIMDDMRGR  100 (114)
Q Consensus        85 psk~Lk~~in~~~~~~  100 (114)
                      ||+.|++.||......
T Consensus        81 psk~Lk~~in~~~~~~   96 (99)
T 3c4i_A           81 PGAQFKAVVSGAQRLP   96 (99)
T ss_dssp             ECHHHHHHHHTSSCCC
T ss_pred             CCHHHHHHHCCCCCCC
T ss_conf             2989999866666899