HHsearch results for GI: 254780496 and protein with PDBid: 2np2_A

>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=99.92  E-value=1.2e-25  Score=177.34  Aligned_cols=95  Identities=28%  Similarity=0.446  Sum_probs=90.4

Q ss_pred             CCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC-CCCCCCCCCEEEE
Q ss_conf             87666999999999-----97199999999999999999999975599600004169998502676-4306889888995
Q gi|254780496|r    2 SKTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-VGRNLQTNQEVKI   75 (114)
Q Consensus         2 ~~~mtK~eli~~ia-----~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R-~~rNP~Tge~i~i   75 (114)
                      ..+|||+|||+.||     +++++++.+++.+||+|+++|.++|.+|++|+|+|||+|+++.+++| .||||+|||.+.|
T Consensus         6 ~~~mtK~dli~~ia~~~~~~~~~lsk~~~~~~vd~~~~~I~~~L~~g~~V~i~gFGtF~~k~r~~R~~~rNPkTge~i~i   85 (108)
T 2np2_A            6 RPKVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVKV   85 (108)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBSSCBCTTTCCBCCB
T ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf             46865999999999750223489689999999999999999999779959973588998871058766619499988885


Q ss_pred             CCCCEEEECCCHHHHHHHHHH
Q ss_conf             688537761698999997311
Q gi|254780496|r   76 DPRRVVVFKASSILKKRIMDD   96 (114)
Q Consensus        76 p~k~~v~Fkpsk~Lk~~in~~   96 (114)
                      |++++|+|+||+.|++.||+.
T Consensus        86 ~~~~~v~Fk~sk~lk~~vn~~  106 (108)
T 2np2_A           86 LDHHVAYFRPGKDLKERVWGI  106 (108)
T ss_dssp             CCEEEEEEEECHHHHHHHHSC
T ss_pred             CCCCCEEECCCHHHHHHHCCC
T ss_conf             487667872798999997056