HHsearch results for GI: 254780496 and protein with PDBid: 2np2_A
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=99.92 E-value=1.2e-25 Score=177.34 Aligned_cols=95 Identities=28% Similarity=0.446 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC-CCCCCCCCCEEEE
Q ss_conf 87666999999999-----97199999999999999999999975599600004169998502676-4306889888995
Q gi|254780496|r 2 SKTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-VGRNLQTNQEVKI 75 (114)
Q Consensus 2 ~~~mtK~eli~~ia-----~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R-~~rNP~Tge~i~i 75 (114)
..+|||+|||+.|| +++++++.+++.+||+|+++|.++|.+|++|+|+|||+|+++.+++| .||||+|||.+.|
T Consensus 6 ~~~mtK~dli~~ia~~~~~~~~~lsk~~~~~~vd~~~~~I~~~L~~g~~V~i~gFGtF~~k~r~~R~~~rNPkTge~i~i 85 (108)
T 2np2_A 6 RPKVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVKV 85 (108)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBSSCBCTTTCCBCCB
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 46865999999999750223489689999999999999999999779959973588998871058766619499988885
Q ss_pred CCCCEEEECCCHHHHHHHHHH
Q ss_conf 688537761698999997311
Q gi|254780496|r 76 DPRRVVVFKASSILKKRIMDD 96 (114)
Q Consensus 76 p~k~~v~Fkpsk~Lk~~in~~ 96 (114)
|++++|+|+||+.|++.||+.
T Consensus 86 ~~~~~v~Fk~sk~lk~~vn~~ 106 (108)
T 2np2_A 86 LDHHVAYFRPGKDLKERVWGI 106 (108)
T ss_dssp CCEEEEEEEECHHHHHHHHSC
T ss_pred CCCCCEEECCCHHHHHHHCCC
T ss_conf 487667872798999997056