HHSEARCH alignment of GI: 254780496 and SCOP domain: d1b8za_

Alignment
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.92  E-value=8.3e-26  Score=176.90  Aligned_cols=90  Identities=28%  Similarity=0.556  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+||++.||+++|+++.+++.+||+|+++|.++|.+|+.|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus         1 MnK~eli~~ia~~~~~s~~~~~~~~~~~~~~i~~~L~~~~~v~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~Fk   80 (90)
T d1b8za_           1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKFK   80 (90)
T ss_dssp             CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEEE
T ss_conf             97899999999864989999999999999999999972887562674478875136555578999988985386308996


Q ss_pred             CCHHHHHHHH
Q ss_conf             6989999973
Q gi|254780496|r   85 ASSILKKRIM   94 (114)
Q Consensus        85 psk~Lk~~in   94 (114)
                      ||+.||+.|.
T Consensus        81 ~sk~lk~~vk   90 (90)
T d1b8za_          81 PGKALKEKVK   90 (90)
T ss_dssp             ECHHHHHHHC
T ss_pred             ECHHHHHHHC
T ss_conf             5899998629


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Thermotoga maritima [TaxId: 2336]