HHSEARCH alignment of GI: 254780496 and SCOP domain: d1huua_

Alignment
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.92  E-value=1e-25  Score=176.40  Aligned_cols=90  Identities=30%  Similarity=0.628  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+|||..||+++|+++.+++.++++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus         1 MtK~dli~~ia~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~v~i~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~Fk   80 (90)
T d1huua_           1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFK   80 (90)
T ss_dssp             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCB----------TTBCCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEECCCEEEECCCCCCEEEECCCCEEEEE
T ss_conf             97899999999864989999999999999999999853996476045799999716621088899988995387318996


Q ss_pred             CCHHHHHHHH
Q ss_conf             6989999973
Q gi|254780496|r   85 ASSILKKRIM   94 (114)
Q Consensus        85 psk~Lk~~in   94 (114)
                      ||+.||+.|.
T Consensus        81 ~sk~lK~~ik   90 (90)
T d1huua_          81 PGKALKDAVK   90 (90)
T ss_dssp             ECHHHHHHHC
T ss_pred             ECHHHHHHHC
T ss_conf             2889998639


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Bacillus stearothermophilus [TaxId: 1422]