HHSEARCH alignment of GI: 254780496 and SCOP domain: d2o97b1

Alignment
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=99.93  E-value=9.5e-27  Score=182.68  Aligned_cols=90  Identities=28%  Similarity=0.517  Sum_probs=89.2

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+|||+.||+++|+++++++.++++|+++|.++|..|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus         1 M~K~eLi~~ia~~~~l~~~~~~~~v~~~~~~i~~~L~~~~~v~l~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~Fk   80 (90)
T d2o97b1           1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFR   80 (90)
T ss_dssp             CBHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECCC------------------CEEEEE
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEECCCEEECCCCCCEEEECCCCEEEEE
T ss_conf             97899999999720989999999999999999999973981732422799998504640088999978995287228995


Q ss_pred             CCHHHHHHHH
Q ss_conf             6989999973
Q gi|254780496|r   85 ASSILKKRIM   94 (114)
Q Consensus        85 psk~Lk~~in   94 (114)
                      ||+.|++.||
T Consensus        81 psk~lk~~lN   90 (90)
T d2o97b1          81 AGKALKDAVN   90 (90)
T ss_dssp             ECHHHHHHCC
T ss_pred             CCHHHHHHHC
T ss_conf             4999997539


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Escherichia coli, beta-isoform [TaxId: 562]