BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (114 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter asiaticus str. psy62] gi|254040173|gb|ACT56969.1| integration host factor subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 114 Score = 229 bits (585), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG Sbjct: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY Sbjct: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 >gi|315122317|ref|YP_004062806.1| integration host factor subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495719|gb|ADR52318.1| integration host factor subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 110 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 81/107 (75%), Positives = 93/107 (86%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KTITRSDL KSISK FGLSRKDST FVTT+FNEICDSA RGEAIKISSFATF V++KG Sbjct: 1 MNKTITRSDLAKSISKNFGLSRKDSTFFVTTVFNEICDSAARGEAIKISSFATFRVRKKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RVGRNLQTNQEV I RRV+VFKAS +LKKRIMD++ +C ++D+ Sbjct: 61 PRVGRNLQTNQEVMIGSRRVMVFKASDVLKKRIMDELDNLECKEEDL 107 >gi|110633500|ref|YP_673708.1| integration host factor subunit alpha [Mesorhizobium sp. BNC1] gi|123058057|sp|Q11J82|IHFA_MESSB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|110284484|gb|ABG62543.1| integration host factor, alpha subunit [Chelativorans sp. BNC1] Length = 111 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 53/107 (49%), Positives = 78/107 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S + V + E+CD+ VRGE +K+SSFATF V++K R Sbjct: 4 KTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 VGRN +T +EV I PRRV+ FKAS++LK RI+ + RK +K+ S Sbjct: 64 VGRNPKTGEEVPISPRRVMTFKASNVLKSRILRAHQTRKPSKEATAS 110 >gi|49475535|ref|YP_033576.1| integration host factor subunit alpha [Bartonella henselae str. Houston-1] gi|81647942|sp|Q6G3K3|IHFA_BARHE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49238341|emb|CAF27565.1| Integration host factor alpha-subunit [Bartonella henselae str. Houston-1] Length = 108 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/100 (54%), Positives = 73/100 (73%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + ++ GLS +S V + NEIC+S VRGEA+K+SSFATF V++K Sbjct: 3 SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRKKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LK+RI+D R R+ Sbjct: 63 RVGRNPKTGVEAPILPRRVVTFKAANVLKQRILDSHRARQ 102 >gi|240850682|ref|YP_002972082.1| integration host factor subunit alpha [Bartonella grahamii as4aup] gi|240267805|gb|ACS51393.1| integration host factor subunit alpha [Bartonella grahamii as4aup] Length = 104 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 54/100 (54%), Positives = 71/100 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + K GLS +S V + +EIC+S VRGEA+K+SSFATF V+ K Sbjct: 3 SKTVTRADLASVVCKRVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LK+RI+D R R+ Sbjct: 63 RVGRNPKTGVEAPIPPRRVVTFKAANVLKQRILDSHRARQ 102 >gi|49474169|ref|YP_032211.1| integration host factor subunit alpha [Bartonella quintana str. Toulouse] gi|81647096|sp|Q6FZZ9|IHFA_BARQU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49239673|emb|CAF26044.1| Integration host factor alpha-subunit [Bartonella quintana str. Toulouse] Length = 104 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + ++ GLS +S V + NEIC+S VRGEA+K+SSFATF V+ K Sbjct: 3 SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRNKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T E I PRRVV FKA+++LK+RI++ R R+ Sbjct: 63 RIGRNPKTGVEAPISPRRVVTFKAANVLKQRILNSHRARQ 102 >gi|15964977|ref|NP_385330.1| integration host factor subunit alpha [Sinorhizobium meliloti 1021] gi|150396054|ref|YP_001326521.1| integration host factor subunit alpha [Sinorhizobium medicae WSM419] gi|307301048|ref|ZP_07580817.1| integration host factor, alpha subunit [Sinorhizobium meliloti BL225C] gi|307317782|ref|ZP_07597220.1| integration host factor, alpha subunit [Sinorhizobium meliloti AK83] gi|21362610|sp|Q92QT3|IHFA_RHIME RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918530|sp|A6U7Q6|IHFA_SINMW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|15074156|emb|CAC45803.1| Probable integration host factor alpha-subunit [Sinorhizobium meliloti 1021] gi|150027569|gb|ABR59686.1| integration host factor, alpha subunit [Sinorhizobium medicae WSM419] gi|306896544|gb|EFN27292.1| integration host factor, alpha subunit [Sinorhizobium meliloti AK83] gi|306904003|gb|EFN34589.1| integration host factor, alpha subunit [Sinorhizobium meliloti BL225C] Length = 112 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 54/110 (49%), Positives = 82/110 (74%), Gaps = 1/110 (0%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE++K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 +GRN +T +EV I PRRV+ FKAS++LK+R++ RK +K ++P+G Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRK-SKLKPSNPAG 112 >gi|163868458|ref|YP_001609667.1| integration host factor subunit alpha [Bartonella tribocorum CIP 105476] gi|189044693|sp|A9IVB2|IHFA_BART1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|161018114|emb|CAK01672.1| integration host factor alpha subunit [Bartonella tribocorum CIP 105476] Length = 107 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 53/100 (53%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + K+ GLS +S V + +EIC+S VRGEA+K+SSFATF V+ K Sbjct: 3 SKTVTRADLASVVCKKVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T E I PRRVV FKA++ILK+RI+D R ++ Sbjct: 63 RIGRNPKTGVEAPIPPRRVVTFKAANILKQRILDSHRAKQ 102 >gi|319898983|ref|YP_004159076.1| integration host factor alpha subunit [Bartonella clarridgeiae 73] gi|319402947|emb|CBI76498.1| integration host factor alpha subunit [Bartonella clarridgeiae 73] Length = 103 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + NEIC+S V+GE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLNEICNSLVKGEMVKLSSFATFQVRNKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T E I PRRVV FKA+++LKKRI+D R +K Sbjct: 63 RIGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102 >gi|159184652|ref|NP_354199.2| integration host factor subunit alpha [Agrobacterium tumefaciens str. C58] gi|23821752|sp|Q8UG61|IHFA_AGRT5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|159139950|gb|AAK86984.2| integration host factor alpha subunit [Agrobacterium tumefaciens str. C58] Length = 112 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 50/102 (49%), Positives = 75/102 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ RGE +K+SSFATF +++K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +GRN +T +EV I PRRV+ FKAS++LK+RI+ RK + Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKAKQ 105 >gi|222148217|ref|YP_002549174.1| integration host factor subunit alpha [Agrobacterium vitis S4] gi|254803508|sp|B9JV88|IHFA_AGRVS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|221735205|gb|ACM36168.1| integration host factor alpha subunit [Agrobacterium vitis S4] Length = 112 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/110 (48%), Positives = 78/110 (70%), Gaps = 1/110 (0%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGEMVKLSSFATFQVRAKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 +GRN +T +EV I PR+V+ FKAS++LK+RI+ RK K +P+ Sbjct: 64 IGRNPKTGEEVPISPRKVMTFKASNVLKQRILRSHLARKA-KQKPANPAA 112 >gi|222085523|ref|YP_002544053.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] gi|254803507|sp|B9JCZ0|IHFA_AGRRK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|221722971|gb|ACM26127.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] Length = 112 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 73/100 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHASRKA 103 >gi|325292554|ref|YP_004278418.1| integration host factor subunit alpha [Agrobacterium sp. H13-3] gi|325060407|gb|ADY64098.1| integration host factor subunit alpha [Agrobacterium sp. H13-3] Length = 112 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 50/99 (50%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ RGE +K+SSFATF +++K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARK 102 >gi|116251406|ref|YP_767244.1| integration host factor subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|123081976|sp|Q1MIS5|IHFA_RHIL3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|115256054|emb|CAK07135.1| putative integration host factor alpha-subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 112 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/99 (52%), Positives = 73/99 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARK 102 >gi|241204022|ref|YP_002975118.1| integration host factor subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857912|gb|ACS55579.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 112 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/99 (52%), Positives = 73/99 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARK 102 >gi|319404309|emb|CBI77902.1| integration host factor alpha subunit [Bartonella rochalimae ATCC BAA-1498] Length = 103 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/100 (53%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + +EIC+S VRGE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LKKRI+D R +K Sbjct: 63 RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102 >gi|227821546|ref|YP_002825516.1| integration host factor subunit alpha [Sinorhizobium fredii NGR234] gi|254803519|sp|C3M9J7|IHFA_RHISN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|227340545|gb|ACP24763.1| integration host factor, alpha subunit [Sinorhizobium fredii NGR234] Length = 112 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 51/109 (46%), Positives = 78/109 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE++K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 +GRN +T +EV I PRRV+ FKAS++LK+R++ R+ + + S Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRRAKQKQTGTAS 112 >gi|327189794|gb|EGE56935.1| integration host factor protein, alpha subunit [Rhizobium etli CNPAF512] Length = 117 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 73/100 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 9 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 68 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 69 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKV 108 >gi|190891218|ref|YP_001977760.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT 652] gi|218515089|ref|ZP_03511929.1| integration host factor subunit alpha [Rhizobium etli 8C-3] gi|226709742|sp|B3PVE1|IHFA_RHIE6 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|190696497|gb|ACE90582.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT 652] Length = 112 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/99 (52%), Positives = 73/99 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRK 102 >gi|319407314|emb|CBI80955.1| integration host factor alpha subunit [Bartonella sp. 1-1C] Length = 103 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + +EIC+S VRGE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRV+ FKA+++LKKRI+D R +K Sbjct: 63 RVGRNPKTGVEASIPPRRVITFKAANVLKKRILDTHRAKK 102 >gi|209548801|ref|YP_002280718.1| integration host factor subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226709743|sp|B5ZXV9|IHFA_RHILW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|209534557|gb|ACI54492.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 112 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 51/99 (51%), Positives = 73/99 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +E+C++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVARK 102 >gi|218459471|ref|ZP_03499562.1| integration host factor subunit alpha [Rhizobium etli Kim 5] gi|218662580|ref|ZP_03518510.1| integration host factor subunit alpha [Rhizobium etli IE4771] Length = 112 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 73/100 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKV 103 >gi|86357171|ref|YP_469063.1| integration host factor subunit alpha [Rhizobium etli CFN 42] gi|123738362|sp|Q2KA00|IHFA_RHIEC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|86281273|gb|ABC90336.1| integration host factor alpha-subunit protein [Rhizobium etli CFN 42] Length = 112 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 73/100 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVTRKV 103 >gi|218682312|ref|ZP_03529913.1| integration host factor subunit alpha [Rhizobium etli CIAT 894] Length = 112 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 51/99 (51%), Positives = 73/99 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ ++ GLSR +S V T+ +E+C++ VRGE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRK 102 >gi|163843049|ref|YP_001627453.1| integration host factor subunit alpha [Brucella suis ATCC 23445] gi|189044695|sp|B0CLA3|IHFA_BRUSI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|163673772|gb|ABY37883.1| integration host factor, alpha subunit [Brucella suis ATCC 23445] Length = 107 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 49/99 (49%), Positives = 75/99 (75%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DLV+++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLVEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102 >gi|319405751|emb|CBI79374.1| integration host factor alpha subunit [Bartonella sp. AR 15-3] Length = 103 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 52/100 (52%), Positives = 71/100 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + EIC+S V+GE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLGEICNSLVKGEMVKLSSFATFQVRDKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LKKRI+D R +K Sbjct: 63 RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102 >gi|13476953|ref|NP_108523.1| integration host factor subunit alpha [Mesorhizobium loti MAFF303099] gi|260460934|ref|ZP_05809184.1| integration host factor, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|21362612|sp|Q982Z7|IHFA_RHILO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|14027716|dbj|BAB54309.1| integration host factor alpha subunit [Mesorhizobium loti MAFF303099] gi|259033511|gb|EEW34772.1| integration host factor, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 107 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 71/92 (77%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +EIC++ VRGE +K+SSFATFHV+ K R Sbjct: 4 KTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +GRN +T +EV I PRRV+ FK+S++LK RI+ Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKSSNVLKNRIL 95 >gi|319784144|ref|YP_004143620.1| integration host factor subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170032|gb|ADV13570.1| integration host factor, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 107 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 71/92 (77%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +EIC++ VRGE +K+SSFATFHV+ K R Sbjct: 4 KTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +GRN +T +EV I PRRV+ FK+S++LK RI+ Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKSSNVLKSRIL 95 >gi|304391930|ref|ZP_07373872.1| integration host factor, alpha subunit [Ahrensia sp. R2A130] gi|303296159|gb|EFL90517.1| integration host factor, alpha subunit [Ahrensia sp. R2A130] Length = 106 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 51/98 (52%), Positives = 73/98 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S++ V + EIC +AV GE+IK+SSF TF V+ K R Sbjct: 4 KTLTRADLAEAVYRKVGLSRLESSKLVEAVLEEICQAAVDGESIKLSSFGTFAVRSKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 VGRN +T +EV I RRV+VFK S+ILK R++DD + R Sbjct: 64 VGRNPKTGEEVPITSRRVMVFKPSNILKSRVLDDHKAR 101 >gi|17987462|ref|NP_540096.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|17983157|gb|AAL52360.1| integration host factor alpha-subunit [Brucella melitensis bv. 1 str. 16M] Length = 128 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 48/99 (48%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 25 KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 85 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 123 >gi|225627276|ref|ZP_03785313.1| integration host factor, alpha subunit [Brucella ceti str. Cudo] gi|237815217|ref|ZP_04594215.1| integration host factor, alpha subunit [Brucella abortus str. 2308 A] gi|297248134|ref|ZP_06931852.1| integration host factor subunit alpha [Brucella abortus bv. 5 str. B3196] gi|306841978|ref|ZP_07474652.1| integration host factor, alpha subunit [Brucella sp. BO2] gi|225617281|gb|EEH14326.1| integration host factor, alpha subunit [Brucella ceti str. Cudo] gi|237790054|gb|EEP64264.1| integration host factor, alpha subunit [Brucella abortus str. 2308 A] gi|297175303|gb|EFH34650.1| integration host factor subunit alpha [Brucella abortus bv. 5 str. B3196] gi|306287906|gb|EFM59323.1| integration host factor, alpha subunit [Brucella sp. BO2] Length = 128 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/99 (48%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 25 KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 85 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 123 >gi|148559603|ref|YP_001258756.1| integration host factor subunit alpha [Brucella ovis ATCC 25840] gi|148370860|gb|ABQ60839.1| integration host factor, alpha subunit [Brucella ovis ATCC 25840] Length = 128 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/99 (48%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 25 KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 85 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 123 >gi|153009845|ref|YP_001371060.1| integration host factor subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|166918512|sp|A6X1X7|IHFA_OCHA4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|151561733|gb|ABS15231.1| integration host factor, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 107 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/99 (48%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRE 102 >gi|23501665|ref|NP_697792.1| integration host factor subunit alpha [Brucella suis 1330] gi|62289729|ref|YP_221522.1| integration host factor subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|82699658|ref|YP_414232.1| integration host factor subunit alpha [Brucella melitensis biovar Abortus 2308] gi|161618744|ref|YP_001592631.1| integration host factor subunit alpha [Brucella canis ATCC 23365] gi|189023978|ref|YP_001934746.1| integration host factor subunit alpha [Brucella abortus S19] gi|225852293|ref|YP_002732526.1| integration host factor subunit alpha [Brucella melitensis ATCC 23457] gi|254689038|ref|ZP_05152292.1| integration host factor subunit alpha [Brucella abortus bv. 6 str. 870] gi|254693521|ref|ZP_05155349.1| integration host factor subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|254697173|ref|ZP_05159001.1| integration host factor subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254701551|ref|ZP_05163379.1| integration host factor subunit alpha [Brucella suis bv. 5 str. 513] gi|254704099|ref|ZP_05165927.1| integration host factor subunit alpha [Brucella suis bv. 3 str. 686] gi|254707000|ref|ZP_05168828.1| integration host factor subunit alpha [Brucella pinnipedialis M163/99/10] gi|254709891|ref|ZP_05171702.1| integration host factor subunit alpha [Brucella pinnipedialis B2/94] gi|254713892|ref|ZP_05175703.1| integration host factor subunit alpha [Brucella ceti M644/93/1] gi|254717051|ref|ZP_05178862.1| integration host factor subunit alpha [Brucella ceti M13/05/1] gi|254718895|ref|ZP_05180706.1| integration host factor subunit alpha [Brucella sp. 83/13] gi|254730069|ref|ZP_05188647.1| integration host factor subunit alpha [Brucella abortus bv. 4 str. 292] gi|256031384|ref|ZP_05444998.1| integration host factor subunit alpha [Brucella pinnipedialis M292/94/1] gi|256044463|ref|ZP_05447367.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256113307|ref|ZP_05454175.1| integration host factor subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|256159505|ref|ZP_05457273.1| integration host factor subunit alpha [Brucella ceti M490/95/1] gi|256254791|ref|ZP_05460327.1| integration host factor subunit alpha [Brucella ceti B1/94] gi|256257288|ref|ZP_05462824.1| integration host factor subunit alpha [Brucella abortus bv. 9 str. C68] gi|256264202|ref|ZP_05466734.1| integration host factor subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|256369210|ref|YP_003106718.1| integration host factor alpha subunit [Brucella microti CCM 4915] gi|260168517|ref|ZP_05755328.1| integration host factor subunit alpha [Brucella sp. F5/99] gi|260545518|ref|ZP_05821259.1| integration host factor subunit alpha [Brucella abortus NCTC 8038] gi|260563814|ref|ZP_05834300.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260566653|ref|ZP_05837123.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40] gi|260754533|ref|ZP_05866881.1| integration host factor subunit alpha [Brucella abortus bv. 6 str. 870] gi|260757754|ref|ZP_05870102.1| integration host factor subunit alpha [Brucella abortus bv. 4 str. 292] gi|260761579|ref|ZP_05873922.1| integration host factor subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260883561|ref|ZP_05895175.1| integration host factor subunit alpha [Brucella abortus bv. 9 str. C68] gi|261213781|ref|ZP_05928062.1| integration host factor subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261218861|ref|ZP_05933142.1| integration host factor subunit alpha [Brucella ceti M13/05/1] gi|261221971|ref|ZP_05936252.1| integration host factor subunit alpha [Brucella ceti B1/94] gi|261314467|ref|ZP_05953664.1| integration host factor subunit alpha [Brucella pinnipedialis M163/99/10] gi|261317433|ref|ZP_05956630.1| integration host factor subunit alpha [Brucella pinnipedialis B2/94] gi|261321640|ref|ZP_05960837.1| integration host factor subunit alpha [Brucella ceti M644/93/1] gi|261752100|ref|ZP_05995809.1| integration host factor subunit alpha [Brucella suis bv. 5 str. 513] gi|261754759|ref|ZP_05998468.1| integration host factor subunit alpha [Brucella suis bv. 3 str. 686] gi|261757987|ref|ZP_06001696.1| integration host factor subunit alpha [Brucella sp. F5/99] gi|265983880|ref|ZP_06096615.1| integration host factor subunit alpha [Brucella sp. 83/13] gi|265988470|ref|ZP_06101027.1| integration host factor subunit alpha [Brucella pinnipedialis M292/94/1] gi|265990884|ref|ZP_06103441.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265994720|ref|ZP_06107277.1| integration host factor subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|265997934|ref|ZP_06110491.1| integration host factor subunit alpha [Brucella ceti M490/95/1] gi|294852138|ref|ZP_06792811.1| integration host factor [Brucella sp. NVSL 07-0026] gi|306838205|ref|ZP_07471059.1| integration host factor, alpha subunit [Brucella sp. NF 2653] gi|306843721|ref|ZP_07476321.1| integration host factor, alpha subunit [Brucella sp. BO1] gi|54037412|sp|P64391|IHFA_BRUSU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|54041367|sp|P64390|IHFA_BRUME RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|75505311|sp|Q57DX3|IHFA_BRUAB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123740908|sp|Q2YNB8|IHFA_BRUA2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044694|sp|A9MAF7|IHFA_BRUC2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707370|sp|B2S525|IHFA_BRUA1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803510|sp|C0RIB4|IHFA_BRUMB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|23347586|gb|AAN29707.1| integration host factor, alpha subunit [Brucella suis 1330] gi|62195861|gb|AAX74161.1| HimA, integration host factor, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82615759|emb|CAJ10755.1| Histone-like bacterial DNA-binding protein:Integration host factor, alpha subunit [Brucella melitensis biovar Abortus 2308] gi|161335555|gb|ABX61860.1| integration host factor, alpha subunit [Brucella canis ATCC 23365] gi|189019550|gb|ACD72272.1| Integration host factor, alpha subunit [Brucella abortus S19] gi|225640658|gb|ACO00572.1| integration host factor, alpha subunit [Brucella melitensis ATCC 23457] gi|255999370|gb|ACU47769.1| integration host factor alpha subunit [Brucella microti CCM 4915] gi|260096925|gb|EEW80800.1| integration host factor subunit alpha [Brucella abortus NCTC 8038] gi|260153830|gb|EEW88922.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260156171|gb|EEW91251.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40] gi|260668072|gb|EEX55012.1| integration host factor subunit alpha [Brucella abortus bv. 4 str. 292] gi|260672011|gb|EEX58832.1| integration host factor subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260674641|gb|EEX61462.1| integration host factor subunit alpha [Brucella abortus bv. 6 str. 870] gi|260873089|gb|EEX80158.1| integration host factor subunit alpha [Brucella abortus bv. 9 str. C68] gi|260915388|gb|EEX82249.1| integration host factor subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260920555|gb|EEX87208.1| integration host factor subunit alpha [Brucella ceti B1/94] gi|260923950|gb|EEX90518.1| integration host factor subunit alpha [Brucella ceti M13/05/1] gi|261294330|gb|EEX97826.1| integration host factor subunit alpha [Brucella ceti M644/93/1] gi|261296656|gb|EEY00153.1| integration host factor subunit alpha [Brucella pinnipedialis B2/94] gi|261303493|gb|EEY06990.1| integration host factor subunit alpha [Brucella pinnipedialis M163/99/10] gi|261737971|gb|EEY25967.1| integration host factor subunit alpha [Brucella sp. F5/99] gi|261741853|gb|EEY29779.1| integration host factor subunit alpha [Brucella suis bv. 5 str. 513] gi|261744512|gb|EEY32438.1| integration host factor subunit alpha [Brucella suis bv. 3 str. 686] gi|262552402|gb|EEZ08392.1| integration host factor subunit alpha [Brucella ceti M490/95/1] gi|262765833|gb|EEZ11622.1| integration host factor subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263001668|gb|EEZ14243.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|263094446|gb|EEZ18268.1| integration host factor subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|264660667|gb|EEZ30928.1| integration host factor subunit alpha [Brucella pinnipedialis M292/94/1] gi|264662472|gb|EEZ32733.1| integration host factor subunit alpha [Brucella sp. 83/13] gi|294820727|gb|EFG37726.1| integration host factor [Brucella sp. NVSL 07-0026] gi|306276031|gb|EFM57740.1| integration host factor, alpha subunit [Brucella sp. BO1] gi|306406714|gb|EFM62939.1| integration host factor, alpha subunit [Brucella sp. NF 2653] Length = 107 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/99 (48%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102 >gi|239831603|ref|ZP_04679932.1| integration host factor, alpha subunit [Ochrobactrum intermedium LMG 3301] gi|239823870|gb|EEQ95438.1| integration host factor, alpha subunit [Ochrobactrum intermedium LMG 3301] Length = 132 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/99 (48%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 29 KTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 88 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 89 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRE 127 >gi|256060895|ref|ZP_05451053.1| integration host factor subunit alpha [Brucella neotomae 5K33] gi|261324891|ref|ZP_05964088.1| integration host factor subunit alpha [Brucella neotomae 5K33] gi|261300871|gb|EEY04368.1| integration host factor subunit alpha [Brucella neotomae 5K33] Length = 107 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 47/99 (47%), Positives = 74/99 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S + + +E+CD+ V GE +K+SSFATF V+ K R Sbjct: 4 KTVTRADLAEAVYRKVGLSRTESAALIEMILDEVCDAIVNGETVKLSSFATFQVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 64 IGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102 >gi|288957866|ref|YP_003448207.1| integration host factor subunit alpha [Azospirillum sp. B510] gi|288910174|dbj|BAI71663.1| integration host factor subunit alpha [Azospirillum sp. B510] Length = 111 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 50/96 (52%), Positives = 69/96 (71%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L +++ +E GLSR +S V T+ +EI D+ RGE +KISSF +F V+QKG RV Sbjct: 5 TVTRAQLSEAVYQEVGLSRNESADLVETVLDEISDALARGEMVKISSFGSFQVRQKGERV 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +EV I PRRV+VF+AS +LK RI + G Sbjct: 65 GRNPKTGEEVPILPRRVLVFRASHVLKHRINEVQEG 100 >gi|163759219|ref|ZP_02166305.1| integration host factor alpha subunit [Hoeflea phototrophica DFL-43] gi|162283623|gb|EDQ33908.1| integration host factor alpha subunit [Hoeflea phototrophica DFL-43] Length = 107 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 49/99 (49%), Positives = 72/99 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+DL +++ ++ GLSR +S V + E+ +S VRGE++K+SSFATF V++K R Sbjct: 4 KTITRADLAEAVFRKVGLSRTESAELVEMVLEEVSNSIVRGESVKLSSFATFQVREKKER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+ FKAS++LK R++ RK Sbjct: 64 IGRNPKTGEEVPISPRRVMTFKASNVLKNRVLKGHLARK 102 >gi|319408456|emb|CBI82111.1| integration host factor alpha subunit [Bartonella schoenbuchensis R1] Length = 103 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 49/99 (49%), Positives = 71/99 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL ++ ++ GLS +S+ V + +EIC+S V+ E +K+SSFATF V+ K R Sbjct: 4 KTVTRADLASAVCRKVGLSYTESSALVELILDEICNSLVKDEVVKLSSFATFQVRSKSER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T E I PRRVV FKA++ILKKRI+D R ++ Sbjct: 64 IGRNPKTGIEAPIPPRRVVTFKAANILKKRILDAHRAKQ 102 >gi|154248306|ref|YP_001419264.1| integration host factor subunit alpha [Xanthobacter autotrophicus Py2] gi|226709760|sp|A7INL3|IHFA_XANP2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|154162391|gb|ABS69607.1| integration host factor, alpha subunit [Xanthobacter autotrophicus Py2] Length = 105 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 68/92 (73%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR+DL +++ ++ GLSR +S + V + EI D RGE +K+SSF +F V++KG Sbjct: 3 GRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T +EV I+PRRV+VFK SSILK RI Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKHRI 94 >gi|115524833|ref|YP_781744.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisA53] gi|122295977|sp|Q07MS0|IHFA_RHOP5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|115518780|gb|ABJ06764.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 113 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/103 (49%), Positives = 70/103 (67%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V+QKG R Sbjct: 6 KTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRQKGQR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 +GRN +T EV I PRRV+VFK S+ILK+RI G N D Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQANGSMSNSD 108 >gi|298291651|ref|YP_003693590.1| integration host factor, subunit alpha [Starkeya novella DSM 506] gi|296928162|gb|ADH88971.1| integration host factor, alpha subunit [Starkeya novella DSM 506] Length = 101 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 48/91 (52%), Positives = 68/91 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TITR+DL +++ + GLSR +S V T+ +EI D RGE +K+SSF +F V+QKG R Sbjct: 4 RTITRADLCEAVYQRVGLSRTESAALVETVLSEIADCVARGETVKLSSFGSFVVRQKGER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T +EV I PRRV+VFK S+ILK++I Sbjct: 64 IGRNPKTGEEVPIAPRRVMVFKPSNILKQQI 94 >gi|307945252|ref|ZP_07660588.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4] gi|307771125|gb|EFO30350.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4] Length = 104 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 48/98 (48%), Positives = 72/98 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TITR+DL +++ ++ GLSR +S+ V + EI D V GE++K+SSF +F V+ KG R Sbjct: 4 RTITRADLCEAVYQKVGLSRTESSELVERVLAEISDCLVTGESVKLSSFGSFVVRSKGER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +GRN +T +EV I PRRV+VFK S++LK+RI D + G+ Sbjct: 64 IGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDSLTGK 101 >gi|146341332|ref|YP_001206380.1| integration host factor subunit alpha [Bradyrhizobium sp. ORS278] gi|166918500|sp|A4YW83|IHFA_BRASO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|146194138|emb|CAL78159.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium sp. ORS278] Length = 119 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 51/107 (47%), Positives = 71/107 (66%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V++KG R Sbjct: 6 KTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 +GRN +T EV I PRRV+VFK S+ILK+RI K N + S Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQANGKMNGESAPS 112 >gi|83593003|ref|YP_426755.1| integration host factor, subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|123739530|sp|Q2RTS7|IHFA_RHORT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|83575917|gb|ABC22468.1| Integration host factor, alpha subunit [Rhodospirillum rubrum ATCC 11170] Length = 105 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 70/101 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+ L +++ +E GLSR +S + + NE+ ++ V G+ +KISSF +F V++KG R Sbjct: 4 KTITRAQLSEAVYQEVGLSRNESADLLEMVLNEMSEALVEGDTVKISSFGSFSVREKGER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 VGRN +T +EV I PRRV+VF+ S +LK RI D G + N Sbjct: 64 VGRNPKTGEEVPILPRRVLVFRPSQLLKARINDGAVGSQIN 104 >gi|89069686|ref|ZP_01157023.1| integration host factor, alpha subunit [Oceanicola granulosus HTCC2516] gi|89044766|gb|EAR50872.1| integration host factor, alpha subunit [Oceanicola granulosus HTCC2516] Length = 101 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 45/92 (48%), Positives = 65/92 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT+TR DL +++ E GLSR DS V ++ + D+ VRGE +KISSF TF V++K + Sbjct: 3 NKTLTRMDLAEAVHAEVGLSRNDSAELVESILTHVSDALVRGETVKISSFGTFSVREKAA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 63 RVGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94 >gi|328543549|ref|YP_004303658.1| integration host factor subunit alpha [polymorphum gilvum SL003B-26A1] gi|326413293|gb|ADZ70356.1| Integration host factor subunit alpha [Polymorphum gilvum SL003B-26A1] Length = 104 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 48/96 (50%), Positives = 72/96 (75%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+TITR+DL +++ ++ GLSR +S+ V + +EI D V GE++K+SSF +F V+ KG Sbjct: 3 SRTITRADLCEAVYQKVGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T +EV I PRRV+VFK S+ILK+RI + + Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNILKQRINESL 98 >gi|316934097|ref|YP_004109079.1| integration host factor subunit alpha [Rhodopseudomonas palustris DX-1] gi|315601811|gb|ADU44346.1| integration host factor, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 118 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 49/91 (53%), Positives = 67/91 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V+QKG R Sbjct: 4 RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 64 VGRNPKTGTEVPISPRRVMVFKPSAILKQRI 94 >gi|209964628|ref|YP_002297543.1| integration host factor subunit alpha [Rhodospirillum centenum SW] gi|209958094|gb|ACI98730.1| integration host factor, alpha subunit [Rhodospirillum centenum SW] Length = 106 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/97 (47%), Positives = 70/97 (72%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+TR+ L +++ +E GLSR +S V ++ +EI D+ RG+ +KISSF +F V+ KG Sbjct: 1 MANTVTRAQLSEAVYQEVGLSRNESADLVESVLDEISDALARGDMVKISSFGSFSVRAKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T +EV I PRRV+VF+AS +LK RI + + Sbjct: 61 QRIGRNPKTGEEVPILPRRVLVFRASHVLKNRINEGL 97 >gi|158423917|ref|YP_001525209.1| integration host factor subunit alpha [Azorhizobium caulinodans ORS 571] gi|172047953|sp|A8I5K8|IHFA_AZOC5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|158330806|dbj|BAF88291.1| integration host factor alpha subunit [Azorhizobium caulinodans ORS 571] Length = 105 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 66/92 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TITR+DL +++ ++ GLSR +S V + EI D +GE +K+SSF +F V+ KG Sbjct: 3 GRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQ 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T +EV I+PRRV+VFK SSILK RI Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKNRI 94 >gi|114704822|ref|ZP_01437730.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506] gi|114539607|gb|EAU42727.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506] Length = 119 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 75/110 (68%), Gaps = 1/110 (0%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V + E+C++ GEA+KISSF +F V+ K R Sbjct: 4 KTLTRADLSEAVFRKIGLSRTESATLVEMVLEEVCETISSGEAVKISSFGSFLVRDKNER 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-DMRGRKCNKDDVTSPS 111 VGRN +T +EV I PR+V VFK S++LK+RI++ R + + DD P+ Sbjct: 64 VGRNPKTGEEVPISPRKVTVFKPSNVLKERILEAHSRKNRADNDDTYVPA 113 >gi|39935809|ref|NP_948085.1| integration host factor subunit alpha [Rhodopseudomonas palustris CGA009] gi|192291397|ref|YP_001992002.1| integration host factor subunit alpha [Rhodopseudomonas palustris TIE-1] gi|81698181|sp|Q6N676|IHFA_RHOPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709744|sp|B3QJM1|IHFA_RHOPT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|39649662|emb|CAE28184.1| integration host factor alpha subunit [Rhodopseudomonas palustris CGA009] gi|192285146|gb|ACF01527.1| integration host factor, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 118 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 48/91 (52%), Positives = 67/91 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V+QKG R Sbjct: 4 RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGQR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 64 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 94 >gi|85716272|ref|ZP_01047246.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A] gi|85696944|gb|EAQ34828.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A] Length = 106 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 70/100 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ K+ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T EV I PRRV+VFK S+ILK+RI + G K Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGAK 104 >gi|75675600|ref|YP_318021.1| integration host factor, alpha subunit [Nitrobacter winogradskyi Nb-255] gi|123773269|sp|Q3SSS2|IHFA_NITWN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|74420470|gb|ABA04669.1| integration host factor, alpha subunit [Nitrobacter winogradskyi Nb-255] Length = 106 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 70/100 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ K+ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T EV I PRRV+VFK S+ILK+RI + G K Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGGK 104 >gi|148255979|ref|YP_001240564.1| integration host factor subunit alpha [Bradyrhizobium sp. BTAi1] gi|166918499|sp|A5EKG4|IHFA_BRASB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|146408152|gb|ABQ36658.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium sp. BTAi1] Length = 119 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 70/104 (67%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T EV I PRRV+VFK S+ILK+RI K N + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQGSGKMNGE 108 >gi|92117139|ref|YP_576868.1| integration host factor subunit alpha [Nitrobacter hamburgensis X14] gi|123265314|sp|Q1QMY9|IHFA_NITHX RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91800033|gb|ABE62408.1| integration host factor, alpha subunit [Nitrobacter hamburgensis X14] Length = 110 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/98 (50%), Positives = 69/98 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ K+ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R+GRN +T EV I PRRV+VFK S+ILK+RI + G Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGNSNG 102 >gi|27380130|ref|NP_771659.1| integration host factor subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27353284|dbj|BAC50284.1| integration host factor alpha subunit [Bradyrhizobium japonicum USDA 110] Length = 119 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 68/92 (73%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 11 SKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 71 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRI 102 >gi|56697343|ref|YP_167711.1| integration host factor subunit alpha [Ruegeria pomeroyi DSS-3] gi|81676195|sp|Q5LQJ4|IHFA_SILPO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|56679080|gb|AAV95746.1| integration host factor, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 100 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 67/91 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S ++K+R+ Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >gi|83311454|ref|YP_421718.1| integration host factor subunit alpha [Magnetospirillum magneticum AMB-1] gi|123740482|sp|Q2W4R6|IHFA_MAGMM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|82946295|dbj|BAE51159.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 106 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 46/99 (46%), Positives = 70/99 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+ L +++ +E GLSR +S + + +EI + +G+A+KISSF +F V+ KG R Sbjct: 4 KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+VF+ S +LKK+I D M ++ Sbjct: 64 IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGMAAKR 102 >gi|163739611|ref|ZP_02147020.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis BS107] gi|161387070|gb|EDQ11430.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis BS107] Length = 100 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 47/96 (48%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V +L + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99 >gi|259419005|ref|ZP_05742922.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B] gi|259345227|gb|EEW57081.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B] Length = 109 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/93 (49%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 13 KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 72 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I PRRV+ F+ S ++K R+ D Sbjct: 73 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAD 105 >gi|99080754|ref|YP_612908.1| integration host factor subunit alpha [Ruegeria sp. TM1040] gi|123379018|sp|Q1GI70|IHFA_SILST RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|99037034|gb|ABF63646.1| integration host factor alpha subunit [Ruegeria sp. TM1040] Length = 100 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 46/93 (49%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I PRRV+ F+ S ++K R+ D Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAD 96 >gi|149202720|ref|ZP_01879692.1| integration host factor, alpha subunit [Roseovarius sp. TM1035] gi|149144002|gb|EDM32036.1| integration host factor, alpha subunit [Roseovarius sp. TM1035] Length = 100 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 46/93 (49%), Positives = 67/93 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++I +E GLSR D+ + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAIFREVGLSRNDAAQLVESVLGHMSDALVRGEQVKISSFGTFSVRDKTAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I+PRRV+ F+ S ++K R+ D Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 96 >gi|220926815|ref|YP_002502117.1| integration host factor subunit alpha [Methylobacterium nodulans ORS 2060] gi|219951422|gb|ACL61814.1| integration host factor, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 105 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 65/91 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ KG R Sbjct: 4 KTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGKR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T EV I+PRRV+VFK S++LK RI Sbjct: 64 VGRNPKTGVEVAIEPRRVMVFKPSNVLKARI 94 >gi|86749768|ref|YP_486264.1| integration host factor subunit alpha [Rhodopseudomonas palustris HaA2] gi|123004139|sp|Q2IWQ7|IHFA_RHOP2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|86572796|gb|ABD07353.1| integration host factor, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 123 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 67/91 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V+QKG R Sbjct: 6 RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >gi|85703262|ref|ZP_01034366.1| integration host factor, alpha subunit [Roseovarius sp. 217] gi|85672190|gb|EAQ27047.1| integration host factor, alpha subunit [Roseovarius sp. 217] Length = 121 Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 68/93 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR D+ + V ++ + + D+ VRGE +KISSF TF V+ K +R Sbjct: 25 KTLTRMDLSEAVFREVGLSRNDAAQLVESVLDHMSDALVRGEQVKISSFGTFSVRDKTAR 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I+PRRV+ F+ S ++K R+ D Sbjct: 85 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 117 >gi|170744277|ref|YP_001772932.1| integration host factor subunit alpha [Methylobacterium sp. 4-46] gi|226709735|sp|B0UR46|IHFA_METS4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|168198551|gb|ACA20498.1| integration host factor, alpha subunit [Methylobacterium sp. 4-46] Length = 104 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 65/91 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ KG R Sbjct: 4 KTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGKR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T EV I+PRRV+VFK S++LK RI Sbjct: 64 VGRNPKTGVEVAIEPRRVMVFKPSNVLKARI 94 >gi|84687534|ref|ZP_01015410.1| Histone-like DNA-binding protein (IHF) [Maritimibacter alkaliphilus HTCC2654] gi|84664443|gb|EAQ10931.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium HTCC2654] Length = 110 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 66/91 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ V+GE +KISSF TF V+ K +R Sbjct: 14 KTLTRMDLSEAVFREVGLSRNESAQLVESVLGHVSDALVKGETVKISSFGTFSVRDKAAR 73 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T QEV I PRRV+ F+ S I+K+R+ Sbjct: 74 VGRNPKTGQEVPISPRRVLTFRPSQIMKERV 104 >gi|254465016|ref|ZP_05078427.1| integration host factor, alpha subunit [Rhodobacterales bacterium Y4I] gi|206685924|gb|EDZ46406.1| integration host factor, alpha subunit [Rhodobacterales bacterium Y4I] Length = 100 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 46/96 (47%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99 >gi|126739445|ref|ZP_01755138.1| integration host factor, alpha subunit [Roseobacter sp. SK209-2-6] gi|254477557|ref|ZP_05090943.1| integration host factor, alpha subunit [Ruegeria sp. R11] gi|126719545|gb|EBA16254.1| integration host factor, alpha subunit [Roseobacter sp. SK209-2-6] gi|214031800|gb|EEB72635.1| integration host factor, alpha subunit [Ruegeria sp. R11] Length = 100 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 46/96 (47%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99 >gi|90424175|ref|YP_532545.1| integration host factor subunit alpha [Rhodopseudomonas palustris BisB18] gi|123089633|sp|Q214G0|IHFA_RHOPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|90106189|gb|ABD88226.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisB18] Length = 108 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 67/91 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG R Sbjct: 6 KTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >gi|209885010|ref|YP_002288867.1| integration host factor, alpha subunit [Oligotropha carboxidovorans OM5] gi|226709737|sp|B6JGR8|IHFA_OLICO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|209873206|gb|ACI93002.1| integration host factor, alpha subunit [Oligotropha carboxidovorans OM5] Length = 114 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGE 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T EV I PRRV+VFK S+ILK+RI ++ K N D Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRI-NNGAAAKTNGD 107 >gi|91977158|ref|YP_569817.1| integration host factor subunit alpha [Rhodopseudomonas palustris BisB5] gi|123735393|sp|Q136S3|IHFA_RHOPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91683614|gb|ABE39916.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 123 Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 67/91 (73%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V+QKG R Sbjct: 6 RTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >gi|299135072|ref|ZP_07028263.1| integration host factor, alpha subunit [Afipia sp. 1NLS2] gi|298590049|gb|EFI50253.1| integration host factor, alpha subunit [Afipia sp. 1NLS2] Length = 114 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 66/91 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ ++ GLSR +S FV + EI D +GE +K+SSF +F V++KG R Sbjct: 6 KTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGER 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+VFK S+ILK+RI Sbjct: 66 IGRNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >gi|254486218|ref|ZP_05099423.1| integration host factor, alpha subunit [Roseobacter sp. GAI101] gi|214043087|gb|EEB83725.1| integration host factor, alpha subunit [Roseobacter sp. GAI101] Length = 110 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/93 (47%), Positives = 69/93 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + + D+ V+GE +KISSF TF V++K +R Sbjct: 14 KTLTRMDLSEAVFREVGLSRNESAQLVESVLDHMSDALVQGEQVKISSFGTFSVREKSAR 73 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I+PRRV+ F+ S ++K R+ D Sbjct: 74 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 106 >gi|332186955|ref|ZP_08388696.1| integration host factor, alpha subunit [Sphingomonas sp. S17] gi|332012965|gb|EGI55029.1| integration host factor, alpha subunit [Sphingomonas sp. S17] Length = 99 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 46/91 (50%), Positives = 65/91 (71%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+ +E GLSR DS + V + E+CD+ RGE +KIS F TF ++ KG RV Sbjct: 6 TLTRADLAESLHQEVGLSRSDSAQVVEQILVEMCDALSRGENVKISGFGTFVLRDKGERV 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T EV I PRRV+ F+AS +++ RI+ Sbjct: 66 GRNPKTGVEVPIAPRRVLTFRASQMMRDRIV 96 >gi|159044270|ref|YP_001533064.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL 12] gi|189044700|sp|A8LLT5|IHFA_DINSH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157912030|gb|ABV93463.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL 12] Length = 101 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 45/98 (45%), Positives = 69/98 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++ +E GLSR +S + V ++ + D+ VRGE++KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +GRN +T +EV I PRRV+ F+ S ++K+R+ + R R Sbjct: 64 IGRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGNRNR 101 >gi|188581269|ref|YP_001924714.1| histone family protein DNA-binding protein [Methylobacterium populi BJ001] gi|226709733|sp|B1ZKI7|IHFA_METPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|179344767|gb|ACB80179.1| histone family protein DNA-binding protein [Methylobacterium populi BJ001] Length = 108 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 45/92 (48%), Positives = 67/92 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V T+ EIC+ GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLSEAVYQQVGLSRAESAALVETVLGEICNCLSSGETVKLSSFGSFVVRSKGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T EV+I+PR+V+VFK S++LK RI Sbjct: 63 RIGRNPKTGVEVEIEPRQVMVFKPSNVLKARI 94 >gi|121602866|ref|YP_988943.1| integration host factor subunit alpha [Bartonella bacilliformis KC583] gi|166918498|sp|A1USJ0|IHFA_BARBK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120615043|gb|ABM45644.1| integration host factor, alpha subunit [Bartonella bacilliformis KC583] Length = 103 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 46/93 (49%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+DL ++ ++ GLS +S V + +EI DS V+GE +K+S FATF V+ K R Sbjct: 4 RTVTRADLASAVCRKVGLSYTESAALVELILSEISDSLVKGEMVKLSCFATFQVRSKSRR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN +T E I PRRVV FKA++ILK+RI+D Sbjct: 64 IGRNPKTGIEAPIPPRRVVTFKAANILKQRILD 96 >gi|84500953|ref|ZP_00999188.1| integration host factor, alpha subunit [Oceanicola batsensis HTCC2597] gi|84391020|gb|EAQ03438.1| integration host factor, alpha subunit [Oceanicola batsensis HTCC2597] Length = 100 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 46/95 (48%), Positives = 66/95 (69%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL +++ +E GLSR DS + V ++ + D+ VRGE +KISSF TF V+ K +RV Sbjct: 5 TLTRLDLSEAVFREVGLSRNDSAQLVESVLTHMSDALVRGEQVKISSFGTFSVRDKAARV 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 65 GRNPKTGEEVPISPRRVLTFRPSHLMKDRVADGNR 99 >gi|260433446|ref|ZP_05787417.1| integration host factor, alpha subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417274|gb|EEX10533.1| integration host factor, alpha subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 100 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 66/91 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESILNHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94 >gi|144899188|emb|CAM76052.1| Histone-like bacterial DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 104 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 67/92 (72%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TITR+ L +++ +E GLSR +S+ + + E+ ++ +GEA+KISSF +F V+ KG R+ Sbjct: 5 TITRAQLSEAVYQEVGLSRNESSDLLEAVLEEVAEALAQGEAVKISSFGSFAVRSKGQRI 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +EV I PRRV+VF+ S +LKK+I D Sbjct: 65 GRNPKTGEEVPILPRRVLVFRPSQLLKKKIND 96 >gi|23014673|ref|ZP_00054478.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 106 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/95 (47%), Positives = 68/95 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+ L +++ +E GLSR +S + + +EI + +G+A+KISSF +F V+ KG R Sbjct: 4 KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +GRN +T +EV I PRRV+VF+ S +LKK+I D + Sbjct: 64 IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGV 98 >gi|170750364|ref|YP_001756624.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|226709734|sp|B1LZ99|IHFA_METRJ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|170656886|gb|ACB25941.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 106 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ KG R Sbjct: 4 KTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGKR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 VGRN +T EV I+PR+V+VFK S++LK +I + + G + DD Sbjct: 64 VGRNPKTGVEVAIEPRQVMVFKPSNVLKAKI-NGLNGAGEHDDD 106 >gi|310815851|ref|YP_003963815.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium vulgare Y25] gi|308754586|gb|ADO42515.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium vulgare Y25] Length = 99 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 66/91 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ + GLSR DS V T+ I D+ V GE++KISSF TF V++K +R Sbjct: 4 KTLTRMDLAEAVHNKVGLSRNDSATLVETVLQHISDALVAGESVKISSFGTFSVREKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T EV I+PRRV+ F++S ++K+R+ Sbjct: 64 VGRNPKTGIEVPINPRRVLTFRSSHLMKERV 94 >gi|254469379|ref|ZP_05082784.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062] gi|211961214|gb|EEA96409.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062] Length = 103 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/96 (47%), Positives = 68/96 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+TR+DL +++ ++ GLSR +S V + EI S GE++K+SSF +F V+ KG Sbjct: 3 SHTVTRADLCEAVYQKVGLSRTESAELVEQVLAEISASLENGESVKLSSFGSFVVRSKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T +EV I PRRV+VFK S++LK+RI D + Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDAL 98 >gi|254510042|ref|ZP_05122109.1| integration host factor, alpha subunit [Rhodobacteraceae bacterium KLH11] gi|221533753|gb|EEE36741.1| integration host factor, alpha subunit [Rhodobacteraceae bacterium KLH11] Length = 100 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 66/91 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESVLNHMSDALVRGEQVKISSFGTFSVRDKTAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94 >gi|255263450|ref|ZP_05342792.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62] gi|255105785|gb|EET48459.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62] Length = 100 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 65/91 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ E GLSR DS + V ++ + D+ V+GE +KISSF TF V++K +R Sbjct: 4 KTLTRMDLSEAVFNEVGLSRNDSAQLVESVLGHMSDALVKGEQVKISSFGTFAVREKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94 >gi|154253364|ref|YP_001414188.1| integration host factor subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154157314|gb|ABS64531.1| integration host factor, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 105 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/93 (47%), Positives = 66/93 (70%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+TR+ L +++ +E GLSR +S V + EI D RG+ +K+SSF +F V++KG Sbjct: 1 MGETVTRAQLSEAVYQEVGLSRNESAELVELVLAEISDCLARGDTVKLSSFGSFSVRKKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T +EV I PRRV+VF+ S +LK+RI Sbjct: 61 GRMGRNPKTGEEVPIKPRRVLVFRPSHVLKERI 93 >gi|83942553|ref|ZP_00955014.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36] gi|83953774|ref|ZP_00962495.1| integration host factor, alpha subunit [Sulfitobacter sp. NAS-14.1] gi|83841719|gb|EAP80888.1| integration host factor, alpha subunit [Sulfitobacter sp. NAS-14.1] gi|83846646|gb|EAP84522.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36] Length = 100 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 44/93 (47%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V + + D+ V+GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVEAVLEHMSDALVKGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I+PRRV+ F+ S ++K R+ D Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 96 >gi|163851479|ref|YP_001639522.1| histone family protein DNA-binding protein [Methylobacterium extorquens PA1] gi|218530287|ref|YP_002421103.1| histone family protein DNA-binding protein [Methylobacterium chloromethanicum CM4] gi|240138644|ref|YP_002963116.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Methylobacterium extorquens AM1] gi|254561242|ref|YP_003068337.1| integration host factor [Methylobacterium extorquens DM4] gi|226709732|sp|A9W4E5|IHFA_METEP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803518|sp|B7KYG6|IHFA_METC4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|163663084|gb|ABY30451.1| histone family protein DNA-binding protein [Methylobacterium extorquens PA1] gi|218522590|gb|ACK83175.1| histone family protein DNA-binding protein [Methylobacterium chloromethanicum CM4] gi|240008613|gb|ACS39839.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Methylobacterium extorquens AM1] gi|254268520|emb|CAX24477.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Methylobacterium extorquens DM4] Length = 108 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 66/91 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V T+ EIC GE +K+SSF +F V+ KG R Sbjct: 4 KTVTRADLSEAVYQQVGLSRAESAALVETVLAEICTCLSSGETVKLSSFGSFVVRSKGKR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV+I+PR+V+VFK S++LK RI Sbjct: 64 IGRNPKTGVEVEIEPRQVMVFKPSNVLKARI 94 >gi|294677449|ref|YP_003578064.1| integration host factor subunit alpha [Rhodobacter capsulatus SB 1003] gi|294476269|gb|ADE85657.1| integration host factor, alpha subunit [Rhodobacter capsulatus SB 1003] Length = 100 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V T+ + D+ VRGE +KISSF TF V+ K SR Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 64 MGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAE 96 >gi|163735834|ref|ZP_02143263.1| integration host factor, alpha subunit [Roseobacter litoralis Och 149] gi|161390920|gb|EDQ15260.1| integration host factor, alpha subunit [Roseobacter litoralis Och 149] Length = 100 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/93 (47%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ V GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVSGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I+PRRV+ F+ S ++K R+ D Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAD 96 >gi|400045|sp|P30787|IHFA_RHOCA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|151944|gb|AAA26128.1| integration host factor [Rhodobacter capsulatus] Length = 100 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V T+ + D+ VRGE +KISSF TF V+ K SR Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 64 MGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAE 96 >gi|90419421|ref|ZP_01227331.1| integration host factor [Aurantimonas manganoxydans SI85-9A1] gi|90336358|gb|EAS50099.1| integration host factor [Aurantimonas manganoxydans SI85-9A1] Length = 123 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 43/93 (46%), Positives = 69/93 (74%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+DL +++ ++ GLSR +S + V + +E+C + GE++KISSF +F V++K R Sbjct: 5 RTLTRADLSEAVFRKIGLSRTESAQLVEMVLDEMCSTIASGESVKISSFGSFLVREKNER 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN +T +EV I PRRV VFK S++LK RI++ Sbjct: 65 IGRNPKTGEEVPILPRRVAVFKPSNVLKDRIVE 97 >gi|84516338|ref|ZP_01003698.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis SKA53] gi|84510034|gb|EAQ06491.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis SKA53] Length = 100 Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 62/91 (68%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ E GLSR DS V ++ + DS V G+ +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLAEAVHNEVGLSRNDSADLVESVLTHVSDSLVAGDTVKISSFGTFAVRDKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94 >gi|126736415|ref|ZP_01752157.1| integration host factor, alpha subunit [Roseobacter sp. CCS2] gi|126714236|gb|EBA11105.1| integration host factor, alpha subunit [Roseobacter sp. CCS2] Length = 100 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 62/91 (68%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++ + GLSR DS V ++ + + DS V GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLADAVHSQVGLSRNDSADLVESVLSHVSDSLVSGETVKISSFGTFSVRDKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94 >gi|260428384|ref|ZP_05782363.1| integration host factor, alpha subunit [Citreicella sp. SE45] gi|260422876|gb|EEX16127.1| integration host factor, alpha subunit [Citreicella sp. SE45] Length = 149 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/97 (46%), Positives = 65/97 (67%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S V T+ + D+ V GE +KISSF TF V+ K +R Sbjct: 53 KTLTRMDLSEAVFREVGLSRNESAELVETVLQHMSDALVEGEQVKISSFGTFSVRDKAAR 112 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 VGRN +T +EV I PRRV+ F+ S +K+R+ +G Sbjct: 113 VGRNPKTGEEVPIQPRRVLTFRPSHQMKERVAAGNKG 149 >gi|126729742|ref|ZP_01745555.1| integration host factor, alpha subunit [Sagittula stellata E-37] gi|126709861|gb|EBA08914.1| integration host factor, alpha subunit [Sagittula stellata E-37] Length = 100 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 63/91 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S V + + D+ V GE +KISSF TF V++K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAELVEAVLQHMSDALVEGEQVKISSFGTFSVREKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94 >gi|110680344|ref|YP_683351.1| integration host factor subunit alpha [Roseobacter denitrificans OCh 114] gi|109456460|gb|ABG32665.1| integration host factor, alpha subunit [Roseobacter denitrificans OCh 114] Length = 112 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/93 (46%), Positives = 66/93 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ V GE +KISSF TF V+ K +R Sbjct: 16 KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVNGEQVKISSFGTFSVRDKSAR 75 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VGRN +T +EV I+PRRV+ F+ S ++K R+ + Sbjct: 76 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVAN 108 >gi|83952159|ref|ZP_00960891.1| integration host factor, alpha subunit [Roseovarius nubinhibens ISM] gi|83837165|gb|EAP76462.1| integration host factor, alpha subunit [Roseovarius nubinhibens ISM] Length = 92 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 63/85 (74%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL ++I +E GLSR DS + V ++ + + D+ VRGE +KISSF TF V+QK +R+GRN + Sbjct: 2 DLSEAIFREVGLSRNDSAQLVESVLDHMSDALVRGEQVKISSFGTFSVRQKSARMGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T EV IDPRRV+ F+ S ++K+R+ Sbjct: 62 TGTEVPIDPRRVLTFRPSHLMKERV 86 >gi|83858237|ref|ZP_00951759.1| integration host factor, alpha subunit [Oceanicaulis alexandrii HTCC2633] gi|83853060|gb|EAP90912.1| integration host factor, alpha subunit [Oceanicaulis alexandrii HTCC2633] Length = 100 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 64/92 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+TR+DL ++ +E GLSR +S V + + I D V GE++K+SSF +F ++ K Sbjct: 3 SNTVTRADLSDAVHREVGLSRHESAELVEAVLDMISDKLVGGESVKLSSFGSFLLRDKTG 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T +EV I+PRRV+VFK S +LK R+ Sbjct: 63 RVGRNPKTGEEVPIEPRRVLVFKPSQVLKDRV 94 >gi|220924844|ref|YP_002500146.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] gi|219949451|gb|ACL59843.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] Length = 105 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/92 (48%), Positives = 62/92 (67%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KTITR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ +G Sbjct: 3 GKTITRADLTEAVHQRVGLSRAESAALVETVLSEICTCLASGEGVKLSSFGSFVVRDRGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN T EV I PRRV+VFK S++LK + Sbjct: 63 RVGRNPTTRVEVAIAPRRVMVFKPSNLLKAHV 94 >gi|119384600|ref|YP_915656.1| integration host factor, alpha subunit [Paracoccus denitrificans PD1222] gi|166918513|sp|A1B366|IHFA_PARDP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119374367|gb|ABL69960.1| integration host factor, alpha subunit [Paracoccus denitrificans PD1222] Length = 102 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 63/90 (70%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL +++ +E GLSR +S + V ++ I D+ VRGE +KISSF TF V+ K R+ Sbjct: 5 TLTRMDLAEAVFREVGLSRHESAQLVESVLGHISDALVRGEQVKISSFGTFSVRDKNERI 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 65 GRNPKTGEEVPITPRRVLSFRPSHLMKDRV 94 >gi|163793229|ref|ZP_02187205.1| Integration host factor, alpha subunit [alpha proteobacterium BAL199] gi|159181875|gb|EDP66387.1| Integration host factor, alpha subunit [alpha proteobacterium BAL199] Length = 106 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 64/90 (71%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L +S+ +E GLSR +S V ++ +E+ + RGE +KISSF +F V+QKG RV Sbjct: 9 TVTRAQLSESVYEEVGLSRNESAELVESVLDEMIAALARGEMVKISSFGSFSVRQKGRRV 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PR+V+VF+ S +LK +I Sbjct: 69 GRNPKTGDEVPILPRKVLVFRPSHVLKNQI 98 >gi|260575262|ref|ZP_05843262.1| integration host factor, alpha subunit [Rhodobacter sp. SW2] gi|259022522|gb|EEW25818.1| integration host factor, alpha subunit [Rhodobacter sp. SW2] Length = 100 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 62/91 (68%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR DS + V + + D+ V GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNDSAQLVEAVLQHMSDALVGGETVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T EV I PRRV+ F+ S ++K R+ Sbjct: 64 VGRNPKTGDEVPISPRRVMTFRPSHLMKDRV 94 >gi|300022815|ref|YP_003755426.1| integration host factor, subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299524636|gb|ADJ23105.1| integration host factor, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 101 Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 43/93 (46%), Positives = 64/93 (68%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + KT+TR+DL +++ + GL R +S V + EI S G+ +K+SSF +F ++QKG Sbjct: 2 VGKTLTRADLAEAVVSKVGLPRNESQDLVERVLEEISGSLADGDPVKLSSFGSFGIRQKG 61 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T +EV I PRRV+VF+ S+I+K RI Sbjct: 62 ERVGRNPKTGEEVPITPRRVLVFRPSNIMKDRI 94 >gi|114771803|ref|ZP_01449196.1| integration host factor, alpha subunit [alpha proteobacterium HTCC2255] gi|114547619|gb|EAU50510.1| integration host factor, alpha subunit [alpha proteobacterium HTCC2255] Length = 99 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 66/92 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++T+TR DL +++ +E GLSR +S V ++ I D+ VRGE +KISSF TF+++ K + Sbjct: 3 NETLTRMDLAEAVFEEVGLSRNESADLVESVLQHISDALVRGENVKISSFGTFNIRDKNA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T +EV I+PRRV+ F+ S +K ++ Sbjct: 63 RIGRNPKTGEEVPINPRRVLSFRPSHTMKDKV 94 >gi|149914952|ref|ZP_01903481.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b] gi|149811140|gb|EDM70977.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b] Length = 92 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 42/87 (48%), Positives = 62/87 (71%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR DS V ++ + D+ VRGE +KISSF TF V++K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNDSAELVESVLAHMSDALVRGEQVKISSFGTFSVREKSARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T +EV I+PRRV+ F+ S ++K R+ D Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVSD 88 >gi|163741403|ref|ZP_02148794.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis 2.10] gi|161385137|gb|EDQ09515.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis 2.10] Length = 92 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 62/90 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S + V +L + D+ VRGE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91 >gi|312114064|ref|YP_004011660.1| integration host factor, subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311219193|gb|ADP70561.1| integration host factor, alpha subunit [Rhodomicrobium vannielii ATCC 17100] Length = 233 Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 64/91 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GL R ++ V + +I + RGE IK+SSF +F ++QK R Sbjct: 6 KTLTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSER 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T + V I PRRV+VFKAS+I+K RI Sbjct: 66 VGRNPKTGEIVPITPRRVIVFKASNIMKDRI 96 >gi|148556459|ref|YP_001264041.1| integration host factor subunit alpha [Sphingomonas wittichii RW1] gi|166918531|sp|A5VC87|IHFA_SPHWW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148501649|gb|ABQ69903.1| integration host factor, alpha subunit [Sphingomonas wittichii RW1] Length = 100 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 62/91 (68%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL + + +E GLSR DS V + +C + RGE +KIS F +F +++KG R+ Sbjct: 7 TLTRADLSEEVHREIGLSRADSAAVVEQVLEHMCLALARGENVKISGFGSFILREKGQRI 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T EV I PRRV+ F+AS +L+ RI+ Sbjct: 67 GRNPKTGVEVPIAPRRVLTFRASQMLRDRIV 97 >gi|87200378|ref|YP_497635.1| integration host factor, alpha subunit [Novosphingobium aromaticivorans DSM 12444] gi|87136059|gb|ABD26801.1| integration host factor, alpha subunit [Novosphingobium aromaticivorans DSM 12444] Length = 98 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +SI++ GLSR DS V ++ +CD+ G+ +KIS F TF ++ K R+ Sbjct: 6 TLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERI 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PRRV+ F+AS +LK RI Sbjct: 66 GRNPKTGIEVPITPRRVLSFRASQMLKDRI 95 >gi|326386988|ref|ZP_08208598.1| integration host factor, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208169|gb|EGD58976.1| integration host factor, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 61/89 (68%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR+DL +SI++ GLSR +S V + +++CD+ GE +KIS F TF ++ K R+G Sbjct: 1 MTRADLAESINRRVGLSRAESLEMVEAILSQMCDALAEGENVKISGFGTFLLRDKAERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T EV I PRRV+ F+AS +LK RI Sbjct: 61 RNPKTGVEVPITPRRVLTFRASQMLKDRI 89 >gi|126726952|ref|ZP_01742791.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium HTCC2150] gi|126703910|gb|EBA03004.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium HTCC2150] Length = 100 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 63/91 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++I E GLSR +S V ++ + D+ V GE +KISSF TF ++ K +R Sbjct: 4 KTLTRVDLSEAIFNEVGLSRNESAALVQSVLQHMSDALVSGENVKISSFGTFSLRDKNAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S+++K R+ Sbjct: 64 VGRNPKTGEEVPISPRRVLTFRPSNLMKDRV 94 >gi|221639022|ref|YP_002525284.1| integration host factor subunit alpha [Rhodobacter sphaeroides KD131] gi|221159803|gb|ACM00783.1| Integration host factor subunit alpha [Rhodobacter sphaeroides KD131] Length = 101 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 63/91 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ GE +KISSF TF V+ K +R Sbjct: 5 KTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDKSAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+ F+ S ++K+R+ Sbjct: 65 IGRNPKTGDEVPISPRRVLTFRPSHLMKERV 95 >gi|77463165|ref|YP_352669.1| integration host factor subunit alpha [Rhodobacter sphaeroides 2.4.1] gi|126462037|ref|YP_001043151.1| integration host factor subunit alpha [Rhodobacter sphaeroides ATCC 17029] gi|146277950|ref|YP_001168109.1| integration host factor subunit alpha [Rhodobacter sphaeroides ATCC 17025] gi|332558039|ref|ZP_08412361.1| integration host factor subunit alpha [Rhodobacter sphaeroides WS8N] gi|123592159|sp|Q3J366|IHFA_RHOS4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918520|sp|A3PJ63|IHFA_RHOS1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918521|sp|A4WTU0|IHFA_RHOS5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|77387583|gb|ABA78768.1| Histone-like DNA-binding protein (IHF) [Rhodobacter sphaeroides 2.4.1] gi|126103701|gb|ABN76379.1| integration host factor, alpha subunit [Rhodobacter sphaeroides ATCC 17029] gi|145556191|gb|ABP70804.1| integration host factor, alpha subunit [Rhodobacter sphaeroides ATCC 17025] gi|332275751|gb|EGJ21066.1| integration host factor subunit alpha [Rhodobacter sphaeroides WS8N] Length = 100 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 63/91 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I PRRV+ F+ S ++K+R+ Sbjct: 64 IGRNPKTGDEVPISPRRVLTFRPSHLMKERV 94 >gi|296445655|ref|ZP_06887610.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296256900|gb|EFH03972.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 131 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 63/93 (67%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +S T+TR+DL ++ + GLSR +S FV + +EI + V G+ +K+SSF +FH++ K Sbjct: 29 LSHTVTRADLADAVHQRIGLSRTESAEFVEMVLSEIFQAIVAGDDVKLSSFGSFHIRWKN 88 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T I RRVV+FKAS++L+ RI Sbjct: 89 ERVGRNPKTGAAAPISARRVVMFKASNVLRARI 121 >gi|304319842|ref|YP_003853485.1| integration host factor subunit alpha [Parvularcula bermudensis HTCC2503] gi|303298745|gb|ADM08344.1| integration host factor alpha subunit [Parvularcula bermudensis HTCC2503] Length = 112 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 65/99 (65%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KT TR+DL ++ + GLSR++ + ++ +I GE +K+SSF TF +++K Sbjct: 1 MTKTHTRADLCDTVYENVGLSRQECGELIESVLEKIAQHLEEGEQVKLSSFGTFQIREKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R+GRN +T ++V I PRRV+ F+AS +LK R+ D +G Sbjct: 61 ERIGRNPKTGEQVAITPRRVLTFRASHVLKDRVDDGHKG 99 >gi|217976838|ref|YP_002360985.1| integration host factor, alpha subunit [Methylocella silvestris BL2] gi|217502214|gb|ACK49623.1| integration host factor, alpha subunit [Methylocella silvestris BL2] Length = 112 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/91 (48%), Positives = 62/91 (68%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR DL +S+ + GLSRK+S V + NE+ D+ GE +K+SSF +F V+ K R Sbjct: 13 RTVTRVDLAESVYRCVGLSRKESAALVQMVLNELSDALAEGETVKLSSFGSFVVRSKSER 72 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T EV I RRV+VFK SS+LK R+ Sbjct: 73 IGRNPKTGIEVPITQRRVLVFKPSSVLKARV 103 >gi|222101973|ref|YP_002546563.1| integration host factor alpha-subunit protein [Agrobacterium radiobacter K84] gi|221728090|gb|ACM31099.1| integration host factor alpha-subunit protein [Agrobacterium radiobacter K84] Length = 117 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 65/99 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+D+ SI ++ GLSR +S V T+ EIC + +RGE + +SSFA F+V++K R Sbjct: 4 KTLTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T ++ +I RRV+ F AS +K +I GRK Sbjct: 64 PGRNPKTGEDYQIAARRVISFTASDAVKTQIQKAHVGRK 102 >gi|254454267|ref|ZP_05067704.1| integration host factor, alpha subunit [Octadecabacter antarcticus 238] gi|198268673|gb|EDY92943.1| integration host factor, alpha subunit [Octadecabacter antarcticus 238] Length = 100 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 65/97 (67%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++ +E GLSR +S V ++ ++ D+ G+++KISSF TF ++ K +R Sbjct: 4 KTLTRMDLADAVHEEVGLSRNESADLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +GRN +T +EV I PRRV+ F+ S ++K R+ +G Sbjct: 64 IGRNPKTGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 100 >gi|114570072|ref|YP_756752.1| integration host factor subunit alpha [Maricaulis maris MCS10] gi|122315995|sp|Q0APH3|IHFA_MARMM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114340534|gb|ABI65814.1| integration host factor, alpha subunit [Maricaulis maris MCS10] Length = 101 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 65/91 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +S+ +E GLSR++S V ++ + D+ G+++K+SSF +F ++ K R Sbjct: 4 KTLTRADLAESVYREVGLSRQESADLVQSVLAMVSDNLAAGQSVKLSSFGSFLLRDKRGR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T EV ID RRV+VFK S +LK+R+ Sbjct: 64 VGRNPKTGVEVPIDARRVLVFKPSQVLKERV 94 >gi|294083743|ref|YP_003550500.1| integration host factor subunit alpha [Candidatus Puniceispirillum marinum IMCC1322] gi|292663315|gb|ADE38416.1| integration host factor, alpha subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 97 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 45/93 (48%), Positives = 60/93 (64%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT+TR+DL +++ + GLSR +S+ V + EIC E +K+SSF TF V+ K Sbjct: 1 MSKTLTRADLTEAVYRSVGLSRNESSDLVEAVIEEICSCLESNEEVKLSSFGTFSVQSKT 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T E I PRRV+ FK S ILK R+ Sbjct: 61 ERVGRNPKTGVEAVITPRRVLSFKPSHILKNRV 93 >gi|89054274|ref|YP_509725.1| integration host factor subunit alpha [Jannaschia sp. CCS1] gi|123094287|sp|Q28RG2|IHFA_JANSC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|88863823|gb|ABD54700.1| integration host factor alpha subunit [Jannaschia sp. CCS1] Length = 100 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 63/91 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S+ V + + D+ V GE +K+SSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +EV I PRRV+ F+ S ++K R+ Sbjct: 64 VGRNPKTGEEVPISPRRVLTFRPSHLMKDRV 94 >gi|86138658|ref|ZP_01057231.1| integration host factor, alpha subunit [Roseobacter sp. MED193] gi|85824718|gb|EAQ44920.1| integration host factor, alpha subunit [Roseobacter sp. MED193] Length = 92 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 62/90 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S + V ++ + D+ V+GE +KISSF TF V+ K +R+GRN + Sbjct: 2 DLSEAVFREVGLSRNESAQLVESMLQHMSDALVQGEQVKISSFGTFSVRDKSARIGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91 >gi|254501752|ref|ZP_05113903.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] gi|222437823|gb|EEE44502.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] Length = 83 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 42/82 (51%), Positives = 59/82 (71%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 GLSR +S+ V + +EI D V GE++K+SSF +F V+ KG R+GRN +T +EV I P Sbjct: 1 MGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGERIGRNPKTGEEVPISP 60 Query: 78 RRVVVFKASSILKKRIMDDMRG 99 RRV+VFK S++LK+RI D + G Sbjct: 61 RRVMVFKPSNVLKQRINDALTG 82 >gi|149186061|ref|ZP_01864375.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21] gi|148830092|gb|EDL48529.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21] Length = 102 Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 63/90 (70%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL ++I+++ GLSR +S V + ++ D+ RGE +KIS F +F ++ K RV Sbjct: 9 TLTRADLAETINRKMGLSRAESLDLVEEILGKMSDALARGENVKISGFGSFVLRDKKERV 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PRRV+ F+AS +LK+RI Sbjct: 69 GRNPKTGVEVPITPRRVMTFRASQLLKERI 98 >gi|254461470|ref|ZP_05074886.1| integration host factor, alpha subunit [Rhodobacterales bacterium HTCC2083] gi|206678059|gb|EDZ42546.1| integration host factor, alpha subunit [Rhodobacteraceae bacterium HTCC2083] Length = 92 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/85 (47%), Positives = 58/85 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S V + + D+ V GE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAELVENILTHLSDALVEGEQVKISSFGTFSVRDKAARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T QEV I+PRRV+ F+ S ++K R+ Sbjct: 62 TGQEVPINPRRVLTFRPSHLMKDRV 86 >gi|114762844|ref|ZP_01442276.1| integration host factor, alpha subunit [Pelagibaca bermudensis HTCC2601] gi|114544454|gb|EAU47461.1| integration host factor, alpha subunit [Roseovarius sp. HTCC2601] Length = 92 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 61/87 (70%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S V ++ + D+ VRGE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAELVESVLQHMSDALVRGEQVKISSFGTFSVRDKAARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T +EV I PRRV+ F+ S ++K+++ + Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKEQVAE 88 >gi|222102284|ref|YP_002546874.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] gi|221728401|gb|ACM31410.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] Length = 114 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/100 (46%), Positives = 63/100 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL ++ ++ GLSR +S+ V + EI D+ VRGE I +SSFA+ V K R Sbjct: 4 KTVTRADLAYAVFQKIGLSRTESSDLVEVVLGEIGDALVRGEPIGLSSFASLQVNAKTHR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +EV I RRVV F AS ++K RI + RK Sbjct: 64 PGRNPRTGEEVLISARRVVKFTASDVMKSRIQKAHKTRKA 103 >gi|94495938|ref|ZP_01302517.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58] gi|94424630|gb|EAT09652.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58] Length = 96 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 63/90 (70%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+++ GLSR ++ V ++ + + D+ RGE +KISSF TF ++ K R+ Sbjct: 6 TLTRADLAESLNRHVGLSRAEAAALVESILDHMSDALERGENVKISSFGTFVLRDKTQRM 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I+PRRV+ F+AS ++ R+ Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRV 95 >gi|182680278|ref|YP_001834424.1| integration host factor, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182636161|gb|ACB96935.1| integration host factor, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 125 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 65/92 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+T+TR +L +++ + GLSRK+S V + +E+ D+ V+GE +K+SSF +F ++ K Sbjct: 24 SQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRSKAE 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T EV I RRV+VFK S++LK ++ Sbjct: 84 RIGRNPKTGIEVPITQRRVLVFKPSNVLKAKV 115 >gi|296282450|ref|ZP_06860448.1| integration host factor subunit alpha [Citromicrobium bathyomarinum JL354] Length = 100 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 61/92 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL ++I+++ G SR +S V ++ +CDS GE +KIS F +F ++ K RV Sbjct: 7 TLTRADLAETINRKLGFSRAESLALVESILAHMCDSLKDGENVKISGFGSFVLRDKKERV 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T EV I PRRV+ F+AS L+ RI D Sbjct: 67 GRNPKTGVEVPITPRRVMTFRASQTLRDRIAD 98 >gi|163746487|ref|ZP_02153845.1| integration host factor, alpha subunit [Oceanibulbus indolifex HEL-45] gi|161380372|gb|EDQ04783.1| integration host factor, alpha subunit [Oceanibulbus indolifex HEL-45] Length = 92 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 39/87 (44%), Positives = 60/87 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S + V + + D+ V GE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAQLVEAVLEHMSDALVEGEQVKISSFGTFSVRDKTARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T +EV I+PRRV+ F+ S ++K R+ + Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVAE 88 >gi|258542774|ref|YP_003188207.1| integration host factor DNA-binding subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|329114627|ref|ZP_08243386.1| Integration host factor subunit alpha [Acetobacter pomorum DM001] gi|256633852|dbj|BAH99827.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636911|dbj|BAI02880.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639964|dbj|BAI05926.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643020|dbj|BAI08975.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646075|dbj|BAI12023.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649128|dbj|BAI15069.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652115|dbj|BAI18049.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655172|dbj|BAI21099.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-12] gi|326696107|gb|EGE47789.1| Integration host factor subunit alpha [Acetobacter pomorum DM001] Length = 106 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 66/103 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+ L++ I ++ GLSRK+S+ + + + D+ RGE++KIS F TF V++KG R Sbjct: 2 ETVTRASLIEQIYQQVGLSRKESSVLLEDVLETVMDALERGESVKISGFGTFSVRKKGQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T +EV I PR V+VF+ S +L+ + + + D Sbjct: 62 SGRNPKTGEEVPILPRSVLVFRPSQLLRAEVNHETLDAEAEHD 104 >gi|114327679|ref|YP_744836.1| integration host factor subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114315853|gb|ABI61913.1| integration host factor alpha-subunit [Granulibacter bethesdensis CGDNIH1] Length = 107 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 58/87 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L ++I + GLSR DS + T+ + + GE++KIS F TF V+QKG R+ Sbjct: 3 TVTRAHLAETIYTQVGLSRNDSALLLETVLERMSSALEAGESVKISGFGTFSVRQKGRRI 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T EV I PRRV+VF+ S +LK Sbjct: 63 GRNPKTGIEVPIMPRRVLVFRPSQVLK 89 >gi|58038600|ref|YP_190564.1| integration host factor alpha-subunit [Gluconobacter oxydans 621H] gi|58001014|gb|AAW59908.1| Integration host factor alpha-subunit [Gluconobacter oxydans 621H] Length = 108 Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 60/90 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR++LV+ + GLSR DS+ + +L I D GE++K+S F TF V+QKG R+ Sbjct: 3 TVTRANLVEHLYSRVGLSRHDSSMILESLLGVISDRLEAGESVKLSGFGTFSVRQKGERI 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PR V+VF+ S +L+ R+ Sbjct: 63 GRNPKTGVEVPILPRAVLVFRPSQLLRDRM 92 >gi|56552018|ref|YP_162857.1| integration host factor subunit alpha [Zymomonas mobilis subsp. mobilis ZM4] gi|241761906|ref|ZP_04759991.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752446|ref|YP_003225339.1| integration host factor, subunit alpha [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|5834289|gb|AAD53893.1|AF176314_3 HimA [Zymomonas mobilis subsp. mobilis ZM4] gi|56543592|gb|AAV89746.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241373586|gb|EER63158.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551809|gb|ACV74755.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 113 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 60/91 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+D+ + E GLSR DS + + + I D+ +GE +KIS F +F ++ K RV Sbjct: 20 TLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNERV 79 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T EV I PRRV+ F+AS ++++RI+ Sbjct: 80 GRNPKTGIEVPIAPRRVLTFRASQLMRQRII 110 >gi|148259288|ref|YP_001233415.1| integration host factor, alpha subunit [Acidiphilium cryptum JF-5] gi|326402443|ref|YP_004282524.1| integration host factor alpha subunit [Acidiphilium multivorum AIU301] gi|146400969|gb|ABQ29496.1| integration host factor, alpha subunit [Acidiphilium cryptum JF-5] gi|325049304|dbj|BAJ79642.1| integration host factor alpha subunit [Acidiphilium multivorum AIU301] Length = 104 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 58/87 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L +SI GLSR +S + + + + + GE+IKIS F TF V+QKG R+ Sbjct: 3 TLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGRRI 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I PRRV+VF+ S IL+ Sbjct: 63 GRNPKTGREVPILPRRVLVFRPSQILR 89 >gi|197105121|ref|YP_002130498.1| integration host factor alpha-subunit [Phenylobacterium zucineum HLK1] gi|226709738|sp|B4RB18|IHFA_PHEZH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|196478541|gb|ACG78069.1| integration host factor alpha-subunit [Phenylobacterium zucineum HLK1] Length = 100 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 60/90 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ ++ GL+R+D V + +C + RGE +K+S F F V+ K +R+ Sbjct: 5 TVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + I+PRRV+ F+AS ++K R+ Sbjct: 65 GRNPKTGEPAAIEPRRVIGFRASQVMKARV 94 >gi|14194876|sp|Q9RNZ5|IHFA_ZYMMO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Length = 100 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 60/91 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+D+ + E GLSR DS + + + I D+ +GE +KIS F +F ++ K RV Sbjct: 7 TLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNERV 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T EV I PRRV+ F+AS ++++RI+ Sbjct: 67 GRNPKTGIEVPIAPRRVLTFRASQLMRQRII 97 >gi|85709150|ref|ZP_01040216.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1] gi|85690684|gb|EAQ30687.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1] Length = 99 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 63/90 (70%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL ++I+++ GLSR +S V ++ ++ D+ GE +KIS F +F ++ K R+ Sbjct: 6 TLTRADLAETINRKMGLSRAESLDLVESILTKMSDALANGENVKISGFGSFVLRDKNERI 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PRRV+ F+AS +LK++I Sbjct: 66 GRNPKTGVEVPITPRRVLTFRASQLLKEQI 95 >gi|182677372|ref|YP_001831518.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633255|gb|ACB94029.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 171 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 60/93 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL S+ G+SRKD+ R VT + +EI ++ VRGE ++++SF F ++ K R+ Sbjct: 71 TVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRI 130 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T I PRRV+ FKAS +L R+ D Sbjct: 131 GRNPRTGVAAVIPPRRVLKFKASKVLLDRLNGD 163 >gi|329850595|ref|ZP_08265440.1| integration host factor subunit alpha [Asticcacaulis biprosthecum C19] gi|328840910|gb|EGF90481.1| integration host factor subunit alpha [Asticcacaulis biprosthecum C19] Length = 100 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 60/92 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+T+TR++L + + E GL R++ V + + D+ RGE +K+S F F V++K + Sbjct: 3 SQTLTRAELFEDVHNELGLPRQECAAIVERTLDLVVDALERGEMVKLSGFGVFQVREKNA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T + IDPR+V+ F+AS I+K R+ Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94 >gi|85374549|ref|YP_458611.1| integration host factor subunit alpha [Erythrobacter litoralis HTCC2594] gi|123099506|sp|Q2N927|IHFA_ERYLH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|84787632|gb|ABC63814.1| integration host factor alpha-subunit [Erythrobacter litoralis HTCC2594] Length = 100 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL ++I+++ G SR +S V + +C + +GE +KIS F +F ++ K R+ Sbjct: 7 TLTRADLAEAINRKMGFSRAESLDMVEAILEHMCGALRKGENVKISGFGSFVLRDKKERI 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PRRV+ F+AS +L++RI Sbjct: 67 GRNPKTGVEVPITPRRVMTFRASQLLRERI 96 >gi|326408797|gb|ADZ65862.1| Integration host factor, alpha subunit [Brucella melitensis M28] gi|326538516|gb|ADZ86731.1| integration host factor, alpha subunit [Brucella melitensis M5-90] Length = 79 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/74 (50%), Positives = 55/74 (74%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 V + +E+CD+ V GE +K+SSFATF V+ K R+GRN +T +EV I PRRV+ FKAS+ Sbjct: 1 MVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRRVMTFKASN 60 Query: 88 ILKKRIMDDMRGRK 101 +LK+RI+ + + R+ Sbjct: 61 VLKQRILQEHQKRQ 74 >gi|254419022|ref|ZP_05032746.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3] gi|196185199|gb|EDX80175.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3] Length = 103 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 63/93 (67%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+DL +++ +E GLSR++ + V I +S +G+ +K+S F F V++K +R Sbjct: 6 QTVTRADLCEAVHEEVGLSRQECSALVERTLELIVESLEQGDTVKLSGFGVFQVREKRAR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN +T + I+PRRV+ F+AS I+K R+ D Sbjct: 66 MGRNPKTGEPAAINPRRVISFRASQIMKSRVHD 98 >gi|307294086|ref|ZP_07573930.1| integration host factor, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306880237|gb|EFN11454.1| integration host factor, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 98 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+++ GLSR ++ + ++ + + RGE +KISSF TF ++ K R+ Sbjct: 6 TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I+PRRV+ F+AS ++ R+ Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRV 95 >gi|294013226|ref|YP_003546686.1| integration host factor alpha subunit [Sphingobium japonicum UT26S] gi|292676556|dbj|BAI98074.1| integration host factor alpha subunit [Sphingobium japonicum UT26S] Length = 98 Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+++ GLSR ++ + ++ + + RGE +KISSF TF ++ K R+ Sbjct: 6 TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I+PRRV+ F+AS ++ R+ Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRV 95 >gi|315499913|ref|YP_004088716.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315417925|gb|ADU14565.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 100 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 60/92 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+TR++L +++ E GL R++ V + + DS +GE +K+S F F V++K + Sbjct: 3 ATTLTRAELFEAVHNELGLPRQECAALVERTLDLVIDSLEKGETVKLSGFGVFQVREKNA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T + IDPR+V+ F+AS I+K R+ Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94 >gi|296534243|ref|ZP_06896727.1| integration host factor [Roseomonas cervicalis ATCC 49957] gi|296265430|gb|EFH11571.1| integration host factor [Roseomonas cervicalis ATCC 49957] Length = 102 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 59/96 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TITR+ L ++I + GLSR +S + + I + G +KIS+F TF V+QKG RV Sbjct: 3 TITRAQLAEAIYAQVGLSRNESAALLEDVLERISAALEAGRPVKISAFGTFSVRQKGMRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T EV I PRRV+ F+ S +LK R+ + G Sbjct: 63 GRNPKTGIEVPIMPRRVLSFRPSQVLKARLNGEPVG 98 >gi|302383009|ref|YP_003818832.1| integration host factor, subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302193637|gb|ADL01209.1| integration host factor, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 102 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 63/97 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+DL +++ +E GLSR++ + V I +S +G+ +K+S F F V++K +R Sbjct: 5 QTLTRADLCEAVLEEVGLSRQECSSLVERTLELIVESLEQGQTVKLSGFGVFQVREKSAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +GRN +T + I+PRRV+ F+AS I+K R+ G Sbjct: 65 MGRNPKTGEPAAINPRRVISFRASQIMKSRVHGATNG 101 >gi|254438095|ref|ZP_05051589.1| integration host factor, alpha subunit [Octadecabacter antarcticus 307] gi|198253541|gb|EDY77855.1| integration host factor, alpha subunit [Octadecabacter antarcticus 307] Length = 92 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 61/91 (67%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL ++ +E GLSR +S+ V ++ ++ D+ G+++KISSF TF ++ K +R+GRN + Sbjct: 2 DLADAVHEEVGLSRNESSDLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAARIGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 T +EV I PRRV+ F+ S ++K R+ +G Sbjct: 62 TGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 92 >gi|85858504|ref|YP_460706.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85721595|gb|ABC76538.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 91 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 42/91 (46%), Positives = 62/91 (68%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ D+++ + ++ G S+KDS R V ++F+ I +S RGE IKIS F F VK+K SR G Sbjct: 1 MTKIDIIQDVYEKLGFSKKDSARIVESVFDIIKESLGRGEKIKISGFGNFVVKEKKSRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E+ I RRV+ FK+S +L+K + D Sbjct: 61 RNPQTGDEISISARRVLTFKSSQVLRKALND 91 >gi|167646994|ref|YP_001684657.1| integration host factor subunit alpha [Caulobacter sp. K31] gi|189044696|sp|B0T0T0|IHFA_CAUSK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|167349424|gb|ABZ72159.1| integration host factor, alpha subunit [Caulobacter sp. K31] Length = 100 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ +E GL+R+D V + + ++ +GE +K+S F F V+ K +R+ Sbjct: 5 TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRDKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + +I+PRRV+ F+AS ++K RI Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARI 94 >gi|295689080|ref|YP_003592773.1| integration host factor subunit alpha [Caulobacter segnis ATCC 21756] gi|295430983|gb|ADG10155.1| integration host factor, alpha subunit [Caulobacter segnis ATCC 21756] Length = 100 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ +E GL+R+D V + + ++ +GE +K+S F F V+ K +R+ Sbjct: 5 TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRSKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + +I+PRRV+ F+AS ++K RI Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARI 94 >gi|16125619|ref|NP_420183.1| integration host factor alpha-subunit [Caulobacter crescentus CB15] gi|221234370|ref|YP_002516806.1| integration host factor subunit alpha [Caulobacter crescentus NA1000] gi|81782690|sp|Q9A8I3|IHFA_CAUCR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803513|sp|B8H546|IHFA_CAUCN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|13422723|gb|AAK23351.1| integration host factor alpha-subunit [Caulobacter crescentus CB15] gi|220963542|gb|ACL94898.1| integration host factor alpha-subunit [Caulobacter crescentus NA1000] Length = 100 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ +E GL+R+D V + + ++ +GE +K+S F F V+ K +R+ Sbjct: 5 TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEQGETVKLSGFGVFQVRAKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + +I+PRRV+ F+AS ++K RI Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARI 94 >gi|153004748|ref|YP_001379073.1| integration host factor subunit alpha [Anaeromyxobacter sp. Fw109-5] gi|166918497|sp|A7HBJ3|IHFA_ANADF RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|152028321|gb|ABS26089.1| integration host factor, alpha subunit [Anaeromyxobacter sp. Fw109-5] Length = 99 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 65/94 (69%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++S+ ++ G S+K++ V +F+ I ++ RGE IKIS F F V++K SRVG Sbjct: 1 MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVREKKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI-MDDM 97 RN QT +E++I RRV+ F+ S +LK + + DM Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALNLSDM 94 >gi|237747673|ref|ZP_04578153.1| integration host factor subunit alpha [Oxalobacter formigenes OXCC13] gi|229379035|gb|EEO29126.1| integration host factor subunit alpha [Oxalobacter formigenes OXCC13] Length = 129 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 58/90 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL+++++ V T F EIC + RGEA+K+S F F ++ K R Sbjct: 32 TLTKAELTELLYEQVGLNKREAKEMVETFFEEICGALERGEAVKLSGFGNFQLRDKPQRP 91 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK + Sbjct: 92 GRNPRTGEEIPITARRVVTFHASQKLKSMV 121 >gi|291287116|ref|YP_003503932.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290884276|gb|ADD67976.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 91 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 59/91 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ GL++KD + V LFNE+ D + +KIS F F VK++G R+G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T E I+PR VVVF+ S I K + D Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91 >gi|254293751|ref|YP_003059774.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] gi|254042282|gb|ACT59077.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] Length = 103 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 61/91 (67%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+D+V + E GL+R+DS+ ++ + +C+ V ++K++ F F V++K +R Sbjct: 4 KTITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN +T +E I RRVV FK S ++++R+ Sbjct: 64 VGRNPKTGKEAPITARRVVTFKPSPLMRRRV 94 >gi|103486903|ref|YP_616464.1| integration host factor, alpha subunit [Sphingopyxis alaskensis RB2256] gi|122985051|sp|Q1GT91|IHFA_SPHAL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|98976980|gb|ABF53131.1| integration host factor, alpha subunit [Sphingopyxis alaskensis RB2256] Length = 97 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 60/92 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+TR+D+ I+++ GLSR +S V ++ + + D+ G+ +KIS F TF ++ K Sbjct: 3 AGTLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQ 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T EV I PRRV+ F+AS ++ R+ Sbjct: 63 RIGRNPKTGVEVPILPRRVMTFRASQSMRARV 94 >gi|323137735|ref|ZP_08072811.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397032|gb|EFX99557.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 128 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 55/92 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR+DL +I K GL R DS +V + EI D V E +K+SSF F V+ K Sbjct: 22 GRTVTRADLADAIHKRLGLPRADSANYVEMVLEEIFDRIVSREDVKLSSFGAFLVRSKKE 81 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T KI R VV FK S+IL+ RI Sbjct: 82 RLGRNPKTGAGAKITARLVVTFKPSNILRSRI 113 >gi|115375494|ref|ZP_01462754.1| integration host factor, alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|310821386|ref|YP_003953744.1| integration host factor subunit alpha [Stigmatella aurantiaca DW4/3-1] gi|115367537|gb|EAU66512.1| integration host factor, alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|309394458|gb|ADO71917.1| Integration host factor subunit alpha [Stigmatella aurantiaca DW4/3-1] Length = 134 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 60/86 (69%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++ + ++ G S+K+S V +F+ + ++ RG+ IKIS F F V+QK +RVG Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I RRV+ F+ S +LK Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLK 86 >gi|108759809|ref|YP_631785.1| integration host factor subunit alpha [Myxococcus xanthus DK 1622] gi|14194862|sp|Q9K4Q3|IHFA_MYXXA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123247723|sp|Q1D6D8|IHFA_MYXXD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9663772|emb|CAC01236.1| integration host factor alpha subunit [Myxococcus xanthus] gi|108463689|gb|ABF88874.1| integration host factor, alpha subunit [Myxococcus xanthus DK 1622] Length = 129 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 60/86 (69%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++ + ++ G S+K+S V +F+ + ++ RG+ IKIS F F V+QK +RVG Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I RRV+ F+ S +LK Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLK 86 >gi|189424977|ref|YP_001952154.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421236|gb|ACD95634.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 92 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 60/89 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L K + +E G+ +K++ +V L + I ++ +GE +KIS F F V++K +R G Sbjct: 1 MTKIELAKQLHQELGIRQKEAADYVEALLDLIKETLEKGENVKISGFGIFEVREKNARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I+PRRV+ FK S+ILK+ I Sbjct: 61 RNPQTGEAITIEPRRVLTFKPSAILKESI 89 >gi|197122315|ref|YP_002134266.1| integration host factor subunit alpha [Anaeromyxobacter sp. K] gi|220917097|ref|YP_002492401.1| integration host factor, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|226707369|sp|B4UAP1|IHFA_ANASK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803509|sp|B8J836|IHFA_ANAD2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|196172164|gb|ACG73137.1| integration host factor, alpha subunit [Anaeromyxobacter sp. K] gi|219954951|gb|ACL65335.1| integration host factor, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 113 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 60/86 (69%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++S+ ++ G S+K++ V +F+ I ++ RGE IKIS F F V+ K SRVG Sbjct: 1 MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I RRV+ F+ S +LK Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLK 86 >gi|301166555|emb|CBW26131.1| integration host factor alpha-subunit (IHF-alpha) [Bacteriovorax marinus SJ] Length = 137 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 59/90 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++D+V+ + KE G S+K++ V +F I D+ RGE +KIS F F ++ K +RV Sbjct: 2 SLTKADIVERVYKEAGFSKKEAADLVDLVFKVIKDTLARGEKVKISGFGNFSIRDKATRV 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT ++I RRV+ FK S +LK+ + Sbjct: 62 GRNPQTGSAMEISARRVLTFKPSQVLKEDV 91 >gi|86158392|ref|YP_465177.1| integration host factor subunit alpha [Anaeromyxobacter dehalogenans 2CP-C] gi|123723043|sp|Q2IJA7|IHFA_ANADE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|85774903|gb|ABC81740.1| integration host factor, alpha subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 113 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 60/86 (69%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++S+ ++ G S+K++ V +F+ I ++ RGE IKIS F F V+ K SRVG Sbjct: 1 MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I RRV+ F+ S +LK Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLK 86 >gi|94265743|ref|ZP_01289479.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94271834|ref|ZP_01292021.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93450327|gb|EAT01564.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93453718|gb|EAT04096.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 94 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 62/93 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++LV+ I ++ LSR+++ V + D+ RGE + +S F F+V+QK +R Sbjct: 2 TLTKAELVRRIHQQHDLSREEAVAVVDNFLDIAKDTLGRGEDLLLSGFGKFNVRQKKARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT +E+ + PR+V+ FKAS IL++RI D Sbjct: 62 GRNPQTGEELTLSPRKVITFKASGILRQRINGD 94 >gi|258544542|ref|ZP_05704776.1| integration host factor subunit alpha [Cardiobacterium hominis ATCC 15826] gi|258520173|gb|EEV89032.1| integration host factor subunit alpha [Cardiobacterium hominis ATCC 15826] Length = 98 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+SI + G+ R D+ + V LF E+ GEA+K+S F F ++ K R Sbjct: 2 TLTKADIVESIIAQIGIPRPDARQMVDDLFEEVRACLATGEAVKLSGFGNFELRDKKQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV FKA LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARV 91 >gi|71906960|ref|YP_284547.1| integration host factor, alpha subunit [Dechloromonas aromatica RCB] gi|71846581|gb|AAZ46077.1| Integration host factor, alpha subunit [Dechloromonas aromatica RCB] Length = 113 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S TIT++DL + +S E G + +++ V F E+ D RGE IK++ F F ++ K Sbjct: 8 SMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPE 67 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T +E+ I RRVV F AS LK + Sbjct: 68 RPGRNPKTGEEIPITARRVVTFHASGCLKSAV 99 >gi|237745476|ref|ZP_04575956.1| integration host factor subunit alpha [Oxalobacter formigenes HOxBLS] gi|229376827|gb|EEO26918.1| integration host factor subunit alpha [Oxalobacter formigenes HOxBLS] Length = 125 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL+++++ V T F EIC + RGE +K+S F F ++ K R Sbjct: 32 TLTKAELTELLYEQVGLNKREAKEMVETFFEEICCALERGEMVKLSGFGNFQLRDKPQRP 91 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK + Sbjct: 92 GRNPRTGEEIPITARRVVTFHASQKLKSMV 121 >gi|117923410|ref|YP_864027.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1] gi|117607166|gb|ABK42621.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1] Length = 96 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 60/90 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ + GLS+K+S V ++F I + G+ +KIS F F +++K R Sbjct: 2 TMTKADIVQTVYQRLGLSKKESADIVESVFELIRNQLENGDPVKISGFGNFTMREKNPRQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +EV+I RRVV FKAS IL ++ Sbjct: 62 GRNPKTGEEVEISARRVVTFKASQILLNKV 91 >gi|332975691|gb|EGK12576.1| integration host factor subunit alpha [Psychrobacter sp. 1501(2011)] Length = 105 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 59/91 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T++D++ + +FG +R+ V + F+EI D+ V G +K+S F F +K K SR Sbjct: 6 ETLTKADIIDHLVSKFGFTRQQGRMLVDSFFDEIYDNLVEGRDVKLSGFGNFILKDKKSR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +EV+I RRVV FKA L++++ Sbjct: 66 PGRNPKTGEEVQISARRVVTFKAGQKLRRQV 96 >gi|126215723|sp|Q47GF4|IHFA1_DECAR RecName: Full=Integration host factor subunit alpha 1; Short=IHF-alpha 1 Length = 105 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++DL + +S E G + +++ V F E+ D RGE IK++ F F ++ K R Sbjct: 2 TITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASGCLKSAV 91 >gi|162148845|ref|YP_001603306.1| integration host factor alpha-subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545407|ref|YP_002277636.1| integration host factor subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161787422|emb|CAP57017.1| putative integration host factor alpha-subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533084|gb|ACI53021.1| integration host factor, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 105 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L + I + GLSR +S + + + G +KIS F TF V+QKG R Sbjct: 3 TVTRASLAEHIYSQVGLSRNESADLLEHVLERVAKELESGNTVKISGFGTFSVRQKGRRT 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PR V+VF+ S +L+ R+ Sbjct: 63 GRNPKTGVEVPILPRSVLVFRPSQLLRARV 92 >gi|329889489|ref|ZP_08267832.1| integration host factor subunit alpha [Brevundimonas diminuta ATCC 11568] gi|328844790|gb|EGF94354.1| integration host factor subunit alpha [Brevundimonas diminuta ATCC 11568] Length = 91 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 57/86 (66%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + +++ +E GLSR++ + V + I DS +GE +K+S F F V++K +R+GRN +T Sbjct: 1 MCEAVHEEVGLSRQECSGLVERTLDLIVDSLEQGETVKLSGFGVFQVREKRARMGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 + I+PRRV+ F+AS I+K R+ D Sbjct: 61 GEPAAINPRRVISFRASQIMKSRVHD 86 >gi|296116566|ref|ZP_06835176.1| integration host factor, alpha subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976778|gb|EFG83546.1| integration host factor, alpha subunit [Gluconacetobacter hansenii ATCC 23769] Length = 105 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 1/103 (0%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L + I + GLSR +S + + ++ + G+ +KIS F TF V++KG R Sbjct: 3 TVTRATLAEQIYSQVGLSRHESADILEHVLEKVAHALEAGDTVKISGFGTFSVRKKGRRT 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T EV I PR V+VF+ S +L+ + D G +DD Sbjct: 63 GRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGDT-GHMNAEDD 104 >gi|148654111|ref|YP_001281204.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] gi|148573195|gb|ABQ95254.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] Length = 106 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 61/92 (66%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++T+T++D++ + +FG +R+ V + F+EI D+ V G+ +K+S F F +K K S Sbjct: 8 TQTLTKADIIDHLVVKFGFTRQQGRMLVDSFFDEIYDNLVGGKDVKLSGFGNFILKDKKS 67 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T +EV+I RRVV FKA L++++ Sbjct: 68 RPGRNPKTGEEVEISARRVVTFKAGQKLRRQV 99 >gi|329895713|ref|ZP_08271117.1| Integration host factor alpha subunit [gamma proteobacterium IMCC3088] gi|328922189|gb|EGG29544.1| Integration host factor alpha subunit [gamma proteobacterium IMCC3088] Length = 99 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SD+ + +E GL+++++ V F EI S E +K+S F F ++ KG R Sbjct: 3 ALTKSDMADMLFEELGLNKREAKEIVEMFFEEIRASLESNEQVKLSGFGNFELRDKGERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I PRRVV FK LK R+ Sbjct: 63 GRNPKTGEEIPISPRRVVTFKPGQKLKARV 92 >gi|300311300|ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae SmR1] gi|300074085|gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum seropedicae SmR1] Length = 104 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 60/90 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL+++++ V T F+EI ++ RGEA+K+S F F ++ K R Sbjct: 3 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK+ + Sbjct: 63 GRNPKTGEEIPITARRVVTFHASQKLKEMV 92 >gi|297568841|ref|YP_003690185.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296924756|gb|ADH85566.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 95 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL++ + + LS+ +T V + DS GE + +S F F VKQK SR Sbjct: 2 TLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E+ + PRRV+ FK S +L++R+ Sbjct: 62 GRNPQTGEELMLAPRRVITFKPSGLLRQRV 91 >gi|152980190|ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp. Marseille] gi|151280267|gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp. Marseille] Length = 165 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 60/92 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL+++++ V T F+EI ++ RGE++K+S F F ++ K R Sbjct: 64 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLRDKPQRP 123 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F AS LK + D Sbjct: 124 GRNPKTGEEIPITARRVVTFHASQKLKGMVED 155 >gi|257455759|ref|ZP_05620985.1| integration host factor subunit alpha [Enhydrobacter aerosaccus SK60] gi|257446773|gb|EEV21790.1| integration host factor subunit alpha [Enhydrobacter aerosaccus SK60] Length = 105 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 58/96 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T+ +++ + + G++R+DS FV F+E+ ++ +G +K+S F F +K K Sbjct: 7 GKTLTKLEMINHLMENLGMTRQDSRAFVENFFSELSETLTKGHQVKLSGFGNFEIKDKSQ 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R GRN +T + V + RRVV FKA +++ I D + Sbjct: 67 RPGRNPKTGEMVHVTARRVVTFKAGQKMRRSIEDKL 102 >gi|330994019|ref|ZP_08317949.1| Integration host factor subunit alpha [Gluconacetobacter sp. SXCC-1] gi|329758965|gb|EGG75479.1| Integration host factor subunit alpha [Gluconacetobacter sp. SXCC-1] Length = 109 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 57/103 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L + I + GLSR +S + + + + G+ +KIS F TF V+QKG R Sbjct: 5 TVTRATLAEQIYDQVGLSRHESADILEDILERMVRTLETGDTLKISGFGTFSVRQKGQRT 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T EV I PR V+VF+ S +L+ + G + D Sbjct: 65 GRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGQAGGENLPEGD 107 >gi|329907561|ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327546938|gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 60/93 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL+++++ V T F+EI D+ RGE +K+S F F ++ K R Sbjct: 36 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRDALERGELVKLSGFGNFQLRDKPQRP 95 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F AS LK + ++ Sbjct: 96 GRNPKTGEEIPITARRVVTFHASQKLKSMVENE 128 >gi|146328691|ref|YP_001209944.1| integration host factor, alpha subunit [Dichelobacter nodosus VCS1703A] gi|189044699|sp|A5EXT4|IHFA_DICNV RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|146232161|gb|ABQ13139.1| integration host factor, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 98 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V++I + G+ R ++ V LF EI GE +K+S F F ++ K R Sbjct: 2 TLTKADIVEAIIAQIGIPRPEAREIVDDLFEEIRSCLATGEPVKLSGFGNFELRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV FKA LK R+ + Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARVAE 93 >gi|78486002|ref|YP_391927.1| integration host factor, alpha subunit [Thiomicrospira crunogena XCL-2] gi|123755188|sp|Q31F20|IHFA_THICR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|78364288|gb|ABB42253.1| Histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2] Length = 97 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 58/90 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++S +FG ++++S V ++E+ + V+GE IK+S F F +K K +R Sbjct: 2 ALTKADIAETLSDKFGFNKRESKELVEQFYDEMSEVLVKGEQIKLSGFGNFELKDKSARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V I RRVV FK L+ +I Sbjct: 62 GRNPRTGEDVPISARRVVTFKPGQKLRAQI 91 >gi|323136968|ref|ZP_08072048.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397729|gb|EFY00251.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 179 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 7/97 (7%) Query: 4 TITRSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 T+TR+ L +++ +G LSR ++ + + F EI D+ +RGE++K+ SF TF+V+ K Sbjct: 80 TLTRAALREAV---YGCCPSLSRAEARKILDATFEEISDALLRGESVKLRSFGTFNVRSK 136 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T E I PRRV+ FKAS +L + D Sbjct: 137 RERVGRNPKTGVEATITPRRVLTFKASPVLVAHVNGD 173 >gi|134095000|ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas arsenicoxydans] gi|133738903|emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas arsenicoxydans] Length = 151 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 59/90 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL+++++ V T F+EI ++ RGEA+K+S F F ++ K R Sbjct: 50 TLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRP 109 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK + Sbjct: 110 GRNPKTGEEIPITARRVVTFHASQKLKSMV 139 >gi|262277180|ref|ZP_06054973.1| integration host factor subunit alpha (IHF-alpha) [alpha proteobacterium HIMB114] gi|262224283|gb|EEY74742.1| integration host factor subunit alpha (IHF-alpha) [alpha proteobacterium HIMB114] Length = 95 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 55/93 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +TR DL KE G+S+ + +FV +F I + G +K+S F +F VK K Sbjct: 1 MSNNVTRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R+GRN +T +E +I RRVV FK S L K+I Sbjct: 61 ARIGRNPKTKEEKEISSRRVVTFKPSKFLSKKI 93 >gi|95930290|ref|ZP_01313028.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95133753|gb|EAT15414.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 93 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+++ + G S+K+S V T+F + D+ G+ IKI+ F F VKQK +R G Sbjct: 1 MTKADLVENVYFKTGFSKKESAEIVETVFELMKDTLEDGDKIKIAGFGNFVVKQKATRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I R+++ FK S +LK I Sbjct: 61 RNPQTGEEIEISSRKILTFKPSQVLKTAI 89 >gi|77164655|ref|YP_343180.1| integration host factor subunit alpha [Nitrosococcus oceani ATCC 19707] gi|254434600|ref|ZP_05048108.1| integration host factor, alpha subunit [Nitrosococcus oceani AFC27] gi|123594551|sp|Q3JBZ6|IHFA_NITOC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|76882969|gb|ABA57650.1| Integration host factor, alpha subunit [Nitrosococcus oceani ATCC 19707] gi|207090933|gb|EDZ68204.1| integration host factor, alpha subunit [Nitrosococcus oceani AFC27] Length = 99 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ +E GL+++++ V F +I + +GEA+K+S F F ++ KG R Sbjct: 2 ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARV 91 >gi|319943681|ref|ZP_08017962.1| integration host factor subunit alpha [Lautropia mirabilis ATCC 51599] gi|319742914|gb|EFV95320.1| integration host factor subunit alpha [Lautropia mirabilis ATCC 51599] Length = 141 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 57/95 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ L + + GL+++++ V T F EI + +RGE++K+S F F ++ K R Sbjct: 29 TLTKAALADMLFERVGLNKREAKDMVETFFEEISAALIRGESVKLSGFGNFQLRDKQQRP 88 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV F AS LK +I R Sbjct: 89 GRNPKTGEEIPISARRVVTFHASQKLKAQIEAPHR 123 >gi|189424947|ref|YP_001952124.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421206|gb|ACD95604.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 93 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 57/92 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ GLS+K+S V +F + ++ GE IKI+ F F VKQK R G Sbjct: 1 MTKADIVERIHQKIGLSKKESAEMVEMVFGIMKNTLESGEKIKIAGFGNFVVKQKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + I RR++ FK S +LK I D+ Sbjct: 61 RNPQTGDAITISARRILTFKPSQVLKSGINDE 92 >gi|117924608|ref|YP_865225.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1] gi|117926119|ref|YP_866736.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1] gi|117608364|gb|ABK43819.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1] gi|117609875|gb|ABK45330.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1] Length = 96 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ GLS+K+S V ++F I GE +KIS F F ++ K R Sbjct: 2 TMTKADIVQTVYHRLGLSKKESADVVESVFELIRSQLESGEPVKISGFGGFSIRDKKPRQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V+I RRVV FKAS IL R+ Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRV 91 >gi|238653880|emb|CAV30823.1| Integration host factor, alpha subunit [magnetite-containing magnetic vibrio] Length = 104 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/92 (43%), Positives = 57/92 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +TR L ++I KE GLSR +S + T I +S V G+ +KISSF F V+ K Sbjct: 3 NKCLTRLQLSEAIYKEVGLSRTESAEILQTALKIISESLVSGDYVKISSFGCFSVRAKKK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T ++ I PR ++ F+ SS LK RI Sbjct: 63 RMGRNPKTGEQAIILPRNILTFRPSSTLKLRI 94 >gi|292493201|ref|YP_003528640.1| integration host factor, subunit alpha [Nitrosococcus halophilus Nc4] gi|291581796|gb|ADE16253.1| integration host factor, alpha subunit [Nitrosococcus halophilus Nc4] Length = 100 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ +E GL+++++ V F +I + RGE +K+S F F ++ KG R Sbjct: 2 ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALERGETVKLSGFGNFELRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARV 91 >gi|87122323|ref|ZP_01078205.1| Integration host factor alpha subunit [Marinomonas sp. MED121] gi|86162466|gb|EAQ63749.1| Integration host factor alpha subunit [Marinomonas sp. MED121] Length = 98 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 60/95 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ E GLS+KDS V + F+ I ++ ++GE +K+S F F V++K R Sbjct: 3 ALTKADIAENLVDEVGLSKKDSKDLVESFFDVIRETLIQGEQVKLSGFGNFEVREKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I R VV F+ LK ++ + M+ Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVENYMQ 97 >gi|319779416|ref|YP_004130329.1| Integration host factor alpha subunit [Taylorella equigenitalis MCE9] gi|317109440|gb|ADU92186.1| Integration host factor alpha subunit [Taylorella equigenitalis MCE9] Length = 124 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 58/92 (63%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT+T+++L + + + GL+++++ V FN+I D+ GE +K+S F F V+ K + Sbjct: 30 TKTLTKAELAEMLFESVGLNKREAKEIVDQFFNQIRDALANGEHVKLSGFGNFQVRDKAA 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I+ RRVV F AS LK + Sbjct: 90 RPGRNPKTGEVIPIEARRVVTFHASQKLKNAV 121 >gi|42523141|ref|NP_968521.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39575346|emb|CAE79514.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 123 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 58/87 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ ++ G S+K+++ V +F+ + GE +KIS F F V+ K R+ Sbjct: 13 TVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERI 72 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +++KI RRV+ F+ S +LK Sbjct: 73 GRNPQTGEQIKISARRVLTFRPSQVLK 99 >gi|118580717|ref|YP_901967.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503427|gb|ABK99909.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 97 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + GE IKI+ F F VKQK R G Sbjct: 1 MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I RR++ FK S +LK I Sbjct: 61 RNPQTGETITIAARRILTFKPSQVLKNAI 89 >gi|291279581|ref|YP_003496416.1| integration host factor, subunit alpha [Deferribacter desulfuricans SSM1] gi|290754283|dbj|BAI80660.1| integration host factor, alpha subunit [Deferribacter desulfuricans SSM1] Length = 91 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I + G+++KD V +F + + + G ++K+S F F VK +G RVG Sbjct: 1 MTKADIVEKIYNQLGITKKDIANVVDMVFTTMREEILSGNSVKVSGFGNFEVKVRGRRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV I PR VV FK S++ K+ + Sbjct: 61 RNPKTGEEVIIPPRYVVSFKPSNLFKEEV 89 >gi|119945141|ref|YP_942821.1| integration host factor, alpha subunit [Psychromonas ingrahamii 37] gi|166918519|sp|A1SUQ7|IHFA_PSYIN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119863745|gb|ABM03222.1| integration host factor, alpha subunit [Psychromonas ingrahamii 37] Length = 100 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 58/94 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S + GLS++++ FV + F EI + GEA+KIS F F +K K R Sbjct: 2 ALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T +++ I RRVV F+A LK+ + +M Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVEKNM 95 >gi|289208103|ref|YP_003460169.1| integration host factor, subunit alpha [Thioalkalivibrio sp. K90mix] gi|288943734|gb|ADC71433.1| integration host factor, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 99 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL ++++E GL+++++ FV F E+ S GE +K+S F F ++ K R Sbjct: 3 AVTKADLAATLNEELGLNKREAKEFVEMFFEEMRQSLEDGEGVKLSGFGNFILRDKNQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ + RRVV F+ L++R+ Sbjct: 63 GRNPKTGEEIPVSARRVVTFRPGQKLRERV 92 >gi|189425415|ref|YP_001952592.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421674|gb|ACD96072.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 94 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I GLSRKD+ + ++F+ + +S GE IKIS F +F V +K +R G Sbjct: 1 MTKTDLVEKIQASIGLSRKDAAVMLESVFSIMKESLEAGETIKISGFGSFVVSRKAARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I+ R+V+ FK S+L+ I Sbjct: 61 RNPQTGEAITIEARKVLTFKPGSVLRDAI 89 >gi|29654618|ref|NP_820310.1| integration host factor subunit alpha [Coxiella burnetii RSA 493] gi|153207449|ref|ZP_01946149.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706871|ref|YP_001424757.1| integration host factor subunit alpha [Coxiella burnetii Dugway 5J108-111] gi|161831262|ref|YP_001597169.1| integration host factor subunit alpha [Coxiella burnetii RSA 331] gi|165924056|ref|ZP_02219888.1| integration host factor, alpha subunit [Coxiella burnetii RSA 334] gi|212212299|ref|YP_002303235.1| integration host factor subunit alpha [Coxiella burnetii CbuG_Q212] gi|212218732|ref|YP_002305519.1| integration host factor subunit alpha [Coxiella burnetii CbuK_Q154] gi|81722530|sp|Q83C16|IHFA_COXBU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044697|sp|A9KGB5|IHFA_COXBN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044698|sp|A9N8J9|IHFA_COXBR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707371|sp|B6J7X5|IHFA_COXB1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707372|sp|B6IZG2|IHFA_COXB2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|29541886|gb|AAO90824.1| integration host factor alpha-subunit [Coxiella burnetii RSA 493] gi|120576580|gb|EAX33204.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356157|gb|ABS77619.1| integration host factor alpha-subunit [Coxiella burnetii Dugway 5J108-111] gi|161763129|gb|ABX78771.1| integration host factor, alpha subunit [Coxiella burnetii RSA 331] gi|165916488|gb|EDR35092.1| integration host factor, alpha subunit [Coxiella burnetii RSA 334] gi|212010709|gb|ACJ18090.1| integration host factor alpha-subunit [Coxiella burnetii CbuG_Q212] gi|212012994|gb|ACJ20374.1| integration host factor alpha-subunit [Coxiella burnetii CbuK_Q154] Length = 103 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + GL+++++ V F EI S RGE +K+S F F+++ KG R Sbjct: 2 ALTKADLSEHLFNVVGLNKREAKDLVELFFKEISLSLERGEPVKLSGFGNFNLRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV F+A LK R+ +++ Sbjct: 62 GRNPKTGEEIPITARRVVTFRAGHKLKSRVEKNVK 96 >gi|160900042|ref|YP_001565624.1| integration host factor subunit alpha [Delftia acidovorans SPH-1] gi|226707373|sp|A9C3C8|IHFA_DELAS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|160365626|gb|ABX37239.1| integration host factor, alpha subunit [Delftia acidovorans SPH-1] Length = 110 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 56/98 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL++++S V F I S V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKRESKEMVDAFFELISQSLVTGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I+ RRVV F ASS LK++I + G Sbjct: 70 RPGRNPRTGEAIPIEARRVVTFHASSKLKEQIQEGTTG 107 >gi|312126573|ref|YP_003991447.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311776592|gb|ADQ06078.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] Length = 92 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 61/92 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +L+K++S++ GL++KDS + + L I ++ +GE I++ F +F V+Q+ R G Sbjct: 1 MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT +E+ I +V VFKA +LK+ ++ D Sbjct: 61 RNPQTKEEIIIPATKVPVFKAGKMLKRAVIAD 92 >gi|148264666|ref|YP_001231372.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146398166|gb|ABQ26799.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] Length = 92 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I ++ G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVERIYEKVGFSKKESAELVETVFDLIKNTLEDGDKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAI 89 >gi|206889442|ref|YP_002249053.1| integration host factor alpha-subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741380|gb|ACI20437.1| integration host factor alpha-subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 94 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 59/93 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I + GL R + + V T+F + ++ E +KIS F F V++KGSR+G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN +T Q V+I PR+VV F+ S LK+ I ++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQKNI 93 >gi|300114468|ref|YP_003761043.1| integration host factor subunit alpha [Nitrosococcus watsonii C-113] gi|299540405|gb|ADJ28722.1| integration host factor, alpha subunit [Nitrosococcus watsonii C-113] Length = 99 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F +I + +GEA+K+S F F ++ KG R Sbjct: 2 ALTKADMTEILYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARV 91 >gi|222056441|ref|YP_002538803.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|221565730|gb|ACM21702.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 92 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVERIYEKVGFSKKESAELVETVFDLIKSTLEEGDKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAI 89 >gi|209695216|ref|YP_002263145.1| integration host factor subunit alpha [Aliivibrio salmonicida LFI1238] gi|226707367|sp|B6EN06|IHFA_ALISL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|208009168|emb|CAQ79416.1| integration host factor alpha-subunit (IHF-alpha) [Aliivibrio salmonicida LFI1238] Length = 98 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ GLS++D+ V F EI + GE +K+S F F +++K R Sbjct: 2 ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV FK LK R+ D Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARVED 93 >gi|114776313|ref|ZP_01451358.1| integration host factor, alpha subunit [Mariprofundus ferrooxydans PV-1] gi|114553143|gb|EAU55541.1| integration host factor, alpha subunit [Mariprofundus ferrooxydans PV-1] Length = 94 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 61/91 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++ + + + GL++K+S V ++ + I DS RGE +K+S F F V++K +R G Sbjct: 1 MTKAEIARIVHERVGLTKKESAEIVESVLDVIRDSLERGENVKVSGFGHFMVREKHARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++ I+PR VV F+AS +LK ++ + Sbjct: 61 RNPKTGTDITIEPRSVVTFRASPLLKDKLAE 91 >gi|90406951|ref|ZP_01215142.1| integration host factor alpha subunit [Psychromonas sp. CNPT3] gi|90311993|gb|EAS40087.1| integration host factor alpha subunit [Psychromonas sp. CNPT3] Length = 102 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 58/94 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S GLS++++ FV + F EI + GEA+KIS F F +K KG R Sbjct: 2 ALTKAEISIHLSDTIGLSKREAKEFVESFFEEIKATLESGEAVKISGFGGFELKDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T +++ I RRVV F+A LK+ + ++ Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVETNL 95 >gi|262196926|ref|YP_003268135.1| integration host factor, subunit alpha [Haliangium ochraceum DSM 14365] gi|262080273|gb|ACY16242.1| integration host factor, alpha subunit [Haliangium ochraceum DSM 14365] Length = 100 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D++ ++ ++ G S+K++ V T+F+ I + +GE IKIS F F V++K +R+ Sbjct: 4 MTKADIIDAVYEKVGGFSKKEAAEIVETVFDTIKQTLEQGEKIKISGFGNFVVREKKARI 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E+ I RRV+ FK S +LK Sbjct: 64 GRNPQTGEEITISARRVLTFKPSQVLK 90 >gi|39996621|ref|NP_952572.1| integration host factor subunit alpha [Geobacter sulfurreducens PCA] gi|39983502|gb|AAR34895.1| integration host factor, alpha subunit [Geobacter sulfurreducens PCA] gi|298505634|gb|ADI84357.1| integration host factor, alpha subunit [Geobacter sulfurreducens KN400] Length = 91 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V +F I ++ RGE IKI+ F F VK K R G Sbjct: 1 MTKADIVEQIYEKIGFSKKESAELVERVFGLIKETLERGEKIKIAGFGNFVVKDKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGDEIIISARKILTFKPSQVLKSSI 89 >gi|77919025|ref|YP_356840.1| integration host factor subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77545108|gb|ABA88670.1| integration host factor, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 93 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ + + G S+K+S+ V +F+ + ++ +GE IK++ F F VKQK +R G Sbjct: 1 MTKADLVEKVYLKTGFSKKESSDIVEMVFDLMKNTLEKGEKIKLAGFGNFVVKQKATRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I R ++ FK S +LK I Sbjct: 61 RNPQTGEEIEISSRNILTFKPSQVLKAAI 89 >gi|78222629|ref|YP_384376.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78193884|gb|ABB31651.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 91 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V +F I ++ GE IKI+ F F VK+K R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I RR++ FK S +LK I Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSI 89 >gi|327398825|ref|YP_004339694.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] gi|327181454|gb|AEA33635.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] Length = 404 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 58/91 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+LV++I+++ G S K + FV + + ++ G+++ I+ F F+V Q+G R G Sbjct: 314 MTKSELVEAIARKMGSSVKGANAFVNAFVDVVSEALKSGKSVSITGFGKFYVSQRGERTG 373 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI P ++ FKA +LK+ I D Sbjct: 374 RNPQTGEVIKIKPHKIPAFKAGQVLKQTIND 404 >gi|33593555|ref|NP_881199.1| integration host factor subunit alpha [Bordetella pertussis Tohama I] gi|81713302|sp|Q7VVR6|IHFA_BORPE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|33572911|emb|CAE42847.1| integration host factor alpha-subunit [Bordetella pertussis Tohama I] gi|332382962|gb|AEE67809.1| integration host factor subunit alpha [Bordetella pertussis CS] Length = 113 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K Sbjct: 9 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLK 97 >gi|33597181|ref|NP_884824.1| integration host factor subunit alpha [Bordetella parapertussis 12822] gi|33601025|ref|NP_888585.1| integration host factor subunit alpha [Bordetella bronchiseptica RB50] gi|81713742|sp|Q7W7C5|IHFA_BORPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81714215|sp|Q7WKR3|IHFA_BORBR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|33573608|emb|CAE37892.1| integration host factor alpha-subunit [Bordetella parapertussis] gi|33575460|emb|CAE32538.1| integration host factor alpha-subunit [Bordetella bronchiseptica RB50] Length = 113 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K Sbjct: 9 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLK 97 >gi|317403230|gb|EFV83749.1| integration host factor subunit alpha [Achromobacter xylosoxidans C54] Length = 112 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K Sbjct: 9 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLK 97 >gi|39997218|ref|NP_953169.1| integration host factor subunit alpha [Geobacter sulfurreducens PCA] gi|39984108|gb|AAR35496.1| integration host factor, alpha subunit [Geobacter sulfurreducens PCA] Length = 91 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ +S G+S+KDS V +F+ + ++ GE IKIS F F +K K +R G Sbjct: 1 MTKADIVERVSDRCGISKKDSIEMVELVFSILKNTLEIGEDIKISGFGKFEIKNKHARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I+ RR++ FK S+ILK I Sbjct: 61 RNPQTGDAITIEARRILTFKPSTILKNNI 89 >gi|197118378|ref|YP_002138805.1| integration host factor subunit alpha [Geobacter bemidjiensis Bem] gi|253700842|ref|YP_003022031.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|197087738|gb|ACH39009.1| integration host factor, alpha subunit [Geobacter bemidjiensis Bem] gi|251775692|gb|ACT18273.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 92 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVEKIYEKVGFSKKESAELVETVFDLIKTTLEEGDKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAI 89 >gi|293604706|ref|ZP_06687106.1| integration host factor subunit alpha [Achromobacter piechaudii ATCC 43553] gi|292816875|gb|EFF75956.1| integration host factor subunit alpha [Achromobacter piechaudii ATCC 43553] Length = 113 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K Sbjct: 10 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 70 RPGRNPKTGETIPIAARRVVTFHASQKLK 98 >gi|121997236|ref|YP_001002023.1| integration host factor subunit alpha [Halorhodospira halophila SL1] gi|166918508|sp|A1WU59|IHFA_HALHL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|121588641|gb|ABM61221.1| integration host factor, alpha subunit [Halorhodospira halophila SL1] Length = 101 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++D+ + + +E GL+++++ V F EI + GE +K+SSF F ++ K R Sbjct: 2 SLTKADMAERLFEEVGLNKREAKELVELFFEEIRTALENGEPVKLSSFGNFELRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKSRV 91 >gi|163856951|ref|YP_001631249.1| integration host factor subunit alpha [Bordetella petrii DSM 12804] gi|163260679|emb|CAP42981.1| integration host factor alpha-subunit [Bordetella petrii] Length = 107 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K Sbjct: 5 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRNKPP 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 65 RPGRNPKTGETIPIAARRVVTFHASQKLK 93 >gi|311105461|ref|YP_003978314.1| integration host factor subunit alpha [Achromobacter xylosoxidans A8] gi|310760150|gb|ADP15599.1| integration host factor, alpha subunit [Achromobacter xylosoxidans A8] Length = 112 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 56/89 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K Sbjct: 6 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPP 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 66 RPGRNPKTGETIPIAARRVVTFHASQKLK 94 >gi|288940721|ref|YP_003442961.1| integration host factor subunit alpha [Allochromatium vinosum DSM 180] gi|288896093|gb|ADC61929.1| integration host factor, alpha subunit [Allochromatium vinosum DSM 180] Length = 99 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F EI + RGE +K+S F F +++K R Sbjct: 2 ALTKADMAEHLFEELGLNKREAKDIVEMFFEEIRAALERGEQVKLSGFGNFDLREKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKSRV 91 >gi|256822926|ref|YP_003146889.1| integration host factor subunit alpha [Kangiella koreensis DSM 16069] gi|256796465|gb|ACV27121.1| integration host factor, alpha subunit [Kangiella koreensis DSM 16069] Length = 100 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL++++S V F +I D+ G +K+S F F ++ K R Sbjct: 2 ALTKADMAERLYEELGLNKRESKEIVEAFFEQIRDALEDGYNVKLSGFGNFELRDKAQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +EV I RRVV FK L+ ++ D Sbjct: 62 GRNPKTGEEVPISARRVVTFKPGQKLRGKVAD 93 >gi|90021230|ref|YP_527057.1| integration host factor subunit alpha [Saccharophagus degradans 2-40] gi|123396256|sp|Q21KD4|IHFA_SACD2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|89950830|gb|ABD80845.1| integration host factor, alpha subunit [Saccharophagus degradans 2-40] Length = 101 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 55/93 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS ++T++DL + + +E G +++++ V F EI +S E +K+S F F ++ K Sbjct: 1 MSTSLTKADLAEKLYEELGFNKREAKELVEHFFEEIRNSLEDNEQVKLSGFGNFDLRDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T +E+ I RRVV F+ LK R+ Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFRPGQKLKARV 93 >gi|307822734|ref|ZP_07652965.1| integration host factor, alpha subunit [Methylobacter tundripaludum SV96] gi|307736338|gb|EFO07184.1| integration host factor, alpha subunit [Methylobacter tundripaludum SV96] Length = 98 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D + + E GL+++++ V F EI S GE +KIS F F ++ K SR Sbjct: 2 ALTKADFAERLFDELGLNKREAKDMVEMFFEEIKGSLEHGEQVKISGFGKFELRDKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F++ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRSGQKLKARV 91 >gi|89900136|ref|YP_522607.1| integration host factor subunit alpha [Rhodoferax ferrireducens T118] gi|123091398|sp|Q21YS7|IHFA_RHOFD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|89344873|gb|ABD69076.1| integration host factor, alpha subunit [Rhodoferax ferrireducens T118] Length = 102 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ L + + ++ GL++++S V F+ + DS ++GE +KIS F F ++ K R Sbjct: 3 ALTKAQLAELLFEKIGLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F A LK++I D Sbjct: 63 GRNPRTGETIPIQARRVVTFHAGYKLKEQIQD 94 >gi|118577357|ref|YP_899597.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118504862|gb|ABL01344.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 101 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ + +S G+ ++++ V T+ + + D+ GE IKIS F F+VKQK R G Sbjct: 1 MTKADITEKVSNTIGVPKREAADLVETVLSIMKDTLASGERIKISGFGCFNVKQKTDRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I RRV+ FK SSIL+ I Sbjct: 61 RNPQTGERLTISARRVLTFKPSSILRDAI 89 >gi|59711844|ref|YP_204620.1| integration host factor subunit alpha [Vibrio fischeri ES114] gi|197336165|ref|YP_002156041.1| integration host factor, alpha subunit [Vibrio fischeri MJ11] gi|75507023|sp|Q5E5G4|IHFA_VIBF1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709758|sp|B5FDX6|IHFA_VIBFM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|59479945|gb|AAW85732.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Vibrio fischeri ES114] gi|197317655|gb|ACH67102.1| integration host factor, alpha subunit [Vibrio fischeri MJ11] Length = 98 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ GLS++D+ V F EI + GE +K+S F F +++K R Sbjct: 2 ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV FK LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARV 91 >gi|126215724|sp|Q6MMJ0|IHFA_BDEBA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Length = 110 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 57/86 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+++ ++ G S+K+++ V +F+ + GE +KIS F F V+ K R+G Sbjct: 1 MTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +++KI RRV+ F+ S +LK Sbjct: 61 RNPQTGEQIKISARRVLTFRPSQVLK 86 >gi|313672997|ref|YP_004051108.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939753|gb|ADR18945.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 92 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I + G+S+KD + V ++FN+I D + +KIS F +F VK +G R+G Sbjct: 1 MTKADIVDIIYETLGISKKDIYKVVDSVFNKIKDEILSKNNVKISGFGSFEVKTRGRRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E I+ R VV FK S +LK+ + Sbjct: 61 RNPKTGEEKVIEARTVVSFKPSRLLKEEV 89 >gi|322419725|ref|YP_004198948.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320126112|gb|ADW13672.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 92 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVEKIYEKVGFSKKESAELVETVFDLIKSTLEDGDKIKIAGFGNFVVKEKSDRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAI 89 >gi|253998435|ref|YP_003050498.1| integration host factor subunit alpha [Methylovorus sp. SIP3-4] gi|313200510|ref|YP_004039168.1| integration host factor subunit alpha [Methylovorus sp. MP688] gi|253985114|gb|ACT49971.1| integration host factor, alpha subunit [Methylovorus sp. SIP3-4] gi|312439826|gb|ADQ83932.1| integration host factor, alpha subunit [Methylovorus sp. MP688] Length = 100 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 59/99 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL + ++ GL+++++ V F EI + G+++K+S F F ++QK R Sbjct: 2 TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRTALESGDSVKLSGFGNFELRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +E+ I RRVV F AS LK ++ + G + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKLKVEEAYAGDRA 100 >gi|118580291|ref|YP_901541.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503001|gb|ABK99483.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379] Length = 94 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ + +S G ++K+S V +F+ I + GE IKI+ F F VKQK R G Sbjct: 1 MTKADIFEKVSSNLGYTKKESAELVEAVFSLIKSTLESGEKIKIAGFGNFEVKQKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + + I+ RR++ FK S +LK I Sbjct: 61 RNPQNGETITIEARRILTFKPSGVLKTAI 89 >gi|91776349|ref|YP_546105.1| integration host factor subunit alpha [Methylobacillus flagellatus KT] gi|123254152|sp|Q1GZS3|IHFA_METFK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91710336|gb|ABE50264.1| integration host factor, alpha subunit [Methylobacillus flagellatus KT] Length = 100 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 58/96 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL + ++ GL+++++ V F EI + G+++K+S F F ++QK R Sbjct: 2 TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRMALEAGDSVKLSGFGNFELRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F AS LK ++ + G Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVEEAYAG 97 >gi|222530470|ref|YP_002574352.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] gi|222457317|gb|ACM61579.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 92 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 60/90 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +L+K++S++ GL++KDS + + L I ++ +GE I++ F +F V+Q+ R G Sbjct: 1 MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V VFKA +LK+ ++ Sbjct: 61 RNPQTREEIIIPATKVPVFKAGKMLKQAVV 90 >gi|302039381|ref|YP_003799703.1| integration host factor subunit alpha [Candidatus Nitrospira defluvii] gi|300607445|emb|CBK43778.1| Integration host factor, alpha subunit [Candidatus Nitrospira defluvii] Length = 91 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D+ I K+ G+S+ D+ V + N + +G+A+KI+ F F V+ KG+R GRN Sbjct: 3 KADIANEIFKQVGVSKNDAADIVELVLNLLKGVLQKGDAVKIAGFGNFVVRSKGARKGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T +E+ I PRRVV F+ S + KK + Sbjct: 63 PRTGEEIGITPRRVVTFRPSQVFKKYV 89 >gi|117618302|ref|YP_856844.1| integration host factor, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|330829620|ref|YP_004392572.1| integration host factor subunit alpha [Aeromonas veronii B565] gi|166918496|sp|A0KKP3|IHFA_AERHH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|117559709|gb|ABK36657.1| integration host factor, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|328804756|gb|AEB49955.1| Integration host factor subunit alpha [Aeromonas veronii B565] Length = 98 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + + G+S++++ V F EI + RGE +KIS F F +++K R Sbjct: 2 ALTKADIAEHLFTQLGMSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|332290335|ref|YP_004421187.1| integration host factor subunit alpha [Gallibacterium anatis UMN179] gi|330433231|gb|AEC18290.1| integration host factor subunit alpha [Gallibacterium anatis UMN179] Length = 98 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F L++ D+ V + F EI + GE +K+S F F ++ K R Sbjct: 2 TLTKVELAENLIEKFNLNKNDAKELVESFFEEIRQALESGEEVKLSGFGNFELRDKTPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V I RRVVVFKA L+ R+ Sbjct: 62 GRNPKTGEYVPITARRVVVFKAGQKLRARV 91 >gi|284108794|ref|ZP_06386459.1| Histone-like bacterial DNA-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283829868|gb|EFC34159.1| Histone-like bacterial DNA-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 91 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 53/85 (62%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D+ I ++ G+S+ ++ V + + D +GEA+KI+ F F V+ KG R GRN Sbjct: 3 KADIANYICEQVGVSKTEAMGLVEYVLQCMKDVLRKGEAVKIAGFGNFMVRNKGERKGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91 +T +E+ I PRRVV F+AS I K+ Sbjct: 63 PRTGEEIAITPRRVVTFRASQIFKR 87 >gi|160900157|ref|YP_001565739.1| integration host factor subunit beta [Delftia acidovorans SPH-1] gi|160365741|gb|ABX37354.1| integration host factor, beta subunit [Delftia acidovorans SPH-1] Length = 113 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 4/111 (3%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG LS++D+ + V T+ + + D+ VRG I+I F +F V + R+ Sbjct: 1 MTRSDLVEELAARFGQLSQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFSVNHRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR-GRKCNKDDVTSPSGS 113 GRN ++ + V I +RV FK L++ + D+R G + D+ S +GS Sbjct: 61 GRNPRSGEAVHIPSKRVPHFKPGKALREAV--DLRPGVAIDTDNTGSGTGS 109 >gi|187478558|ref|YP_786582.1| integration host factor subunit alpha [Bordetella avium 197N] gi|123752290|sp|Q2KZM3|IHFA_BORA1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|115423144|emb|CAJ49675.1| integration host factor alpha-subunit [Bordetella avium 197N] Length = 116 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 57/92 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+++L + + + GL+++++ V T F EI ++ RG+++K+S F F V+ K Sbjct: 9 PRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPP 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 69 RPGRNPKTGETIPIAARRVVTFHASQKLKSTV 100 >gi|117925356|ref|YP_865973.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609112|gb|ABK44567.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 96 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ GLS+K+S V ++F I GE +KI F F + K R Sbjct: 2 TMTKADIVQTVYHRLGLSKKESADVVESVFEIIRSQLESGEPVKIYGFGGFSMLDKKPRQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V+I RRVV FKAS IL R+ Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRV 91 >gi|189423310|ref|YP_001950487.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189419569|gb|ACD93967.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 91 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I G+++K+S V +F+ + + GE +KIS F +F VKQK R G Sbjct: 1 MTKADIVEKIHTNTGMTQKESAEMVEAVFSIMKSTLETGETLKISGFGSFVVKQKNDRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I+ RR++ FK S++L+ I Sbjct: 61 RNPQTGEAITIEARRILTFKPSTVLRDAI 89 >gi|146296237|ref|YP_001180008.1| histone family protein DNA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|302871272|ref|YP_003839908.1| histone family protein DNA-binding protein [Caldicellulosiruptor obsidiansis OB47] gi|312128213|ref|YP_003993087.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|312134569|ref|YP_004001907.1| histone family protein DNA-binding protein [Caldicellulosiruptor owensensis OL] gi|312623028|ref|YP_004024641.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] gi|312792841|ref|YP_004025764.1| histone family protein DNA-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876107|ref|ZP_07736095.1| histone family protein DNA-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|145409813|gb|ABP66817.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor saccharolyticus DSM 8903] gi|302574131|gb|ADL41922.1| histone family protein DNA-binding protein [Caldicellulosiruptor obsidiansis OB47] gi|311774620|gb|ADQ04107.1| histone family protein DNA-binding protein [Caldicellulosiruptor owensensis OL] gi|311778232|gb|ADQ07718.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311797093|gb|EFR13434.1| histone family protein DNA-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|312179981|gb|ADQ40151.1| histone family protein DNA-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312203495|gb|ADQ46822.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] Length = 91 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 58/86 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++KD+ + + + + ++ +GE +++ F +F V+++ RVG Sbjct: 1 MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V VFKA +LK Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLK 86 >gi|118578624|ref|YP_899874.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118501334|gb|ABK97816.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 91 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 58/86 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I G+++K+S + T+F+ + + GE +KIS F +F VKQK +R G Sbjct: 1 MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I+ RRV+ FK S++L+ Sbjct: 61 RNPQTGETITIEARRVLSFKPSTVLR 86 >gi|220934628|ref|YP_002513527.1| integration host factor, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] gi|254803522|sp|B8GRI6|IHFA_THISH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|219995938|gb|ACL72540.1| integration host factor, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 99 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F E+ + RGE +K+S F F ++ K R Sbjct: 2 ALTKADMSERLFEELGLNKREAKELVEMFFEEVRMALERGEQVKLSGFGNFTLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARV 91 >gi|182678712|ref|YP_001832858.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634595|gb|ACB95369.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 122 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 3 KTITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 KT TR+DL+ +I S F LSR + EI ++ +RGE +K+ SF F V+ K Sbjct: 18 KTATRADLLDAIYTSCSF-LSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKR 76 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R+GRN +T EV I PRRV+ FKAS +L Sbjct: 77 ERIGRNPRTGVEVPIKPRRVLTFKASPVL 105 >gi|254491603|ref|ZP_05104782.1| integration host factor, alpha subunit [Methylophaga thiooxidans DMS010] gi|224463081|gb|EEF79351.1| integration host factor, alpha subunit [Methylophaga thiooxydans DMS010] Length = 98 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + E G +++++ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADMTEQLYDELGFNKREAKELVEMFFEEIRSALENGEQVKLSGFGNFELRDKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARV 91 >gi|227510316|ref|ZP_03940365.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513323|ref|ZP_03943372.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577] gi|227524467|ref|ZP_03954516.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290] gi|227083196|gb|EEI18508.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577] gi|227088337|gb|EEI23649.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290] gi|227189968|gb|EEI70035.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 91 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 53/84 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ E GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GRN Sbjct: 4 KAELVTNVATETGLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87 >gi|91787981|ref|YP_548933.1| integration host factor subunit alpha [Polaromonas sp. JS666] gi|123059944|sp|Q12BQ7|IHFA_POLSJ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91697206|gb|ABE44035.1| integration host factor, alpha subunit [Polaromonas sp. JS666] Length = 111 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 55/95 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + ++ GL++++S + F+ I DS V G +KIS F F ++ K Sbjct: 10 TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK +I D Sbjct: 70 RPGRNPRTGEAIPIQARRVVTFHASHKLKDQIQGD 104 >gi|320354295|ref|YP_004195634.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320122797|gb|ADW18343.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 95 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T++DLV+ + K L++ ST V T S + GE + +S F F++K K SR Sbjct: 2 TLTKADLVQQVYKTHPNLTKSQSTESVETFLALSKSSLITGEDLLLSGFGKFNIKDKKSR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT E+ +D RRVV FK S IL+ RI D Sbjct: 62 RGRNPQTGNELTLDARRVVTFKPSGILRSRINSD 95 >gi|89094709|ref|ZP_01167645.1| integration host factor, alpha subunit [Oceanospirillum sp. MED92] gi|89081055|gb|EAR60291.1| integration host factor, alpha subunit [Oceanospirillum sp. MED92] Length = 101 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++D+ + +++E GL+++++ V + F+EI E +K+S F F ++ K R Sbjct: 3 SLTKADMAERLNEELGLNKREAKEMVESFFDEIRACLAANEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +EV I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEVPISARRVVTFRPGQKLKDRV 92 >gi|303258448|ref|ZP_07344451.1| integration host factor subunit alpha [Burkholderiales bacterium 1_1_47] gi|330999748|ref|ZP_08323456.1| putative integration host factor, alpha subunit [Parasutterella excrementihominis YIT 11859] gi|302858894|gb|EFL81982.1| integration host factor subunit alpha [Burkholderiales bacterium 1_1_47] gi|329573910|gb|EGG55490.1| putative integration host factor, alpha subunit [Parasutterella excrementihominis YIT 11859] Length = 136 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+S L I ++FGL ++ V F+E + VRGE +K+S+F F +KQK R Sbjct: 30 TLTKSHLADVIYEQFGLPKRFCKEIVDLFFDEALECLVRGEELKLSNFGVFSIKQKSERP 89 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN ++ + I R+VV F S L+K +++ GRK Sbjct: 90 GRNPKSGESAIIKARQVVSFHPSGQLRKEVVE---GRK 124 >gi|237808480|ref|YP_002892920.1| integration host factor, alpha subunit [Tolumonas auensis DSM 9187] gi|259491534|sp|C4LFG7|IHFA_TOLAT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|237500741|gb|ACQ93334.1| integration host factor, alpha subunit [Tolumonas auensis DSM 9187] Length = 106 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + E G+S++D+ V T F +I + GE +KIS F F ++ K R Sbjct: 2 ALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|260893900|ref|YP_003239997.1| histone family protein DNA-binding protein [Ammonifex degensii KC4] gi|260866041|gb|ACX53147.1| histone family protein DNA-binding protein [Ammonifex degensii KC4] Length = 95 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV ++++ +++KD+ + VT +F+ I ++ RG+ +++ F TF V+++ +R G Sbjct: 1 MNKSDLVAQVAEKAEMTKKDAEKAVTAVFDAIAEALARGDKVQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V VF+A LK + Sbjct: 61 RNPQTGAEIEIAACKVPVFRAGKALKAAV 89 >gi|261855913|ref|YP_003263196.1| integration host factor, subunit alpha [Halothiobacillus neapolitanus c2] gi|261836382|gb|ACX96149.1| integration host factor, alpha subunit [Halothiobacillus neapolitanus c2] Length = 100 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV+ + E GL+++++ FV F E+ + GE IK+S F F ++ K R Sbjct: 2 ALTKADLVEKLHAELGLNKREAKDFVDIFFEELRATLESGEEIKLSGFGNFQLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + + RRVV F+A LK + Sbjct: 62 GRNPRTGEMIPVSARRVVTFRAGQKLKAMV 91 >gi|23006898|ref|ZP_00049004.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 80 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 31/68 (45%), Positives = 47/68 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+DL +++ ++ GLSR +S V T+ EIC+ GE +K+SSF +F V+ KG R Sbjct: 4 KTVTRADLSEAVYQQVGLSRAESAALVETVLAEICNCLSSGETVKLSSFGSFVVRSKGKR 63 Query: 63 VGRNLQTN 70 +GRN +T Sbjct: 64 IGRNPKTG 71 >gi|254785577|ref|YP_003073006.1| integration host factor subunit alpha [Teredinibacter turnerae T7901] gi|237683400|gb|ACR10664.1| integration host factor, alpha subunit [Teredinibacter turnerae T7901] Length = 107 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 55/91 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +++T++DL +++ +E G +++++ V F EI ++ E +K+S F F ++ K R Sbjct: 10 ESLTKADLAENLYEELGFNKREAKELVEYFFEEIRNALENNEQVKLSGFGNFDLRDKKQR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 70 PGRNPKTGEEIPITARRVVTFRPGQKLKARV 100 >gi|56475892|ref|YP_157481.1| integration host factor subunit alpha [Aromatoleum aromaticum EbN1] gi|81677575|sp|Q5P7Y1|IHFA_AZOSE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|56311935|emb|CAI06580.1| integration host factor, alpha-subunit [Aromatoleum aromaticum EbN1] Length = 103 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 55/93 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+T+++L + + GL+++++ V F EI + RGE +K+S F F ++ K Sbjct: 1 MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRQALERGECVKLSGFGNFQLRDKP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T +E+ I RRVV F AS LK + Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFHASQKLKAAV 93 >gi|54309334|ref|YP_130354.1| integration host factor subunit alpha [Photobacterium profundum SS9] gi|46913770|emb|CAG20552.1| putative integration host factor, alpha subunit [Photobacterium profundum SS9] Length = 103 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +S +T++DL + + + GLS++D+ V F EI + GE +K+S F F ++ K Sbjct: 4 LSMALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKN 63 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T +++ I RRVV F+ LK R+ Sbjct: 64 ERPGRNPKTGEDIPISARRVVTFRPGQKLKARV 96 >gi|226954296|ref|ZP_03824760.1| integration host factor (IHF), alpha subunit, DNA-binding protein [Acinetobacter sp. ATCC 27244] gi|294649378|ref|ZP_06726809.1| integration host factor subunit alpha [Acinetobacter haemolyticus ATCC 19194] gi|226834967|gb|EEH67350.1| integration host factor (IHF), alpha subunit, DNA-binding protein [Acinetobacter sp. ATCC 27244] gi|292824748|gb|EFF83520.1| integration host factor subunit alpha [Acinetobacter haemolyticus ATCC 19194] Length = 98 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|257092831|ref|YP_003166472.1| integration host factor subunit alpha [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045355|gb|ACV34543.1| integration host factor, alpha subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 100 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI ++ RG+ +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALERGDGVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGEV 91 >gi|169634330|ref|YP_001708066.1| integration host factor subunit alpha [Acinetobacter baumannii SDF] gi|169797146|ref|YP_001714939.1| integration host factor subunit alpha [Acinetobacter baumannii AYE] gi|184156927|ref|YP_001845266.1| integration host factor subunit alpha [Acinetobacter baumannii ACICU] gi|213156063|ref|YP_002318108.1| integration host factor, alpha subunit [Acinetobacter baumannii AB0057] gi|215484609|ref|YP_002326844.1| integration host factor, alpha subunit [Acinetobacter baumannii AB307-0294] gi|239500688|ref|ZP_04659998.1| integration host factor subunit alpha [Acinetobacter baumannii AB900] gi|260551930|ref|ZP_05825792.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260556048|ref|ZP_05828267.1| integration host factor, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|262281021|ref|ZP_06058804.1| integration host factor alpha subunit [Acinetobacter calcoaceticus RUH2202] gi|293610417|ref|ZP_06692718.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299771523|ref|YP_003733549.1| integration host factor subunit alpha [Acinetobacter sp. DR1] gi|301347474|ref|ZP_07228215.1| integration host factor subunit alpha [Acinetobacter baumannii AB056] gi|301510732|ref|ZP_07235969.1| integration host factor subunit alpha [Acinetobacter baumannii AB058] gi|301596052|ref|ZP_07241060.1| integration host factor subunit alpha [Acinetobacter baumannii AB059] gi|332856885|ref|ZP_08436294.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013150] gi|332867212|ref|ZP_08437477.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013113] gi|332873996|ref|ZP_08441931.1| integration host factor, alpha subunit [Acinetobacter baumannii 6014059] gi|226707360|sp|B7GZZ4|IHFA_ACIB3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707361|sp|B7I698|IHFA_ACIB5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707362|sp|B2HTI2|IHFA_ACIBC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707363|sp|B0VV83|IHFA_ACIBS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707364|sp|B0V5Q4|IHFA_ACIBY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707551|sp|A3M2B0|IHFA_ACIBT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|169150073|emb|CAM87967.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter baumannii AYE] gi|169153122|emb|CAP02196.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter baumannii] gi|183208521|gb|ACC55919.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|193076387|gb|ABO11054.2| integration host factor alpha subunit [Acinetobacter baumannii ATCC 17978] gi|213055223|gb|ACJ40125.1| integration host factor, alpha subunit [Acinetobacter baumannii AB0057] gi|213987020|gb|ACJ57319.1| integration host factor, alpha subunit [Acinetobacter baumannii AB307-0294] gi|260405333|gb|EEW98828.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260410103|gb|EEX03402.1| integration host factor, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|262257921|gb|EEY76656.1| integration host factor alpha subunit [Acinetobacter calcoaceticus RUH2202] gi|292827649|gb|EFF86013.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298701611|gb|ADI92176.1| integration host factor subunit alpha [Acinetobacter sp. DR1] gi|322506823|gb|ADX02277.1| ihfA [Acinetobacter baumannii 1656-2] gi|323516692|gb|ADX91073.1| integration host factor subunit alpha [Acinetobacter baumannii TCDC-AB0715] gi|325124572|gb|ADY84095.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter calcoaceticus PHEA-2] gi|332726939|gb|EGJ58444.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013150] gi|332734151|gb|EGJ65283.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013113] gi|332737737|gb|EGJ68629.1| integration host factor, alpha subunit [Acinetobacter baumannii 6014059] Length = 98 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|294340016|emb|CAZ88380.1| integration host factor (IHF), alpha subunit [Thiomonas sp. 3As] Length = 115 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 57/92 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F+ + D+ RGE +K+S F F +++K Sbjct: 11 TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV+F AS K ++ Sbjct: 71 RPGRNPRTGEIIPIAARRVVIFHASHKFKHQL 102 >gi|260779041|ref|ZP_05887933.1| integration host factor alpha subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260605205|gb|EEX31500.1| integration host factor alpha subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 98 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F +++K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLREKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|296135851|ref|YP_003643093.1| integration host factor, alpha subunit [Thiomonas intermedia K12] gi|295795973|gb|ADG30763.1| integration host factor, alpha subunit [Thiomonas intermedia K12] Length = 115 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 57/92 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F+ + D+ RGE +K+S F F +++K Sbjct: 11 TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV+F AS K ++ Sbjct: 71 RPGRNPRTGEIIPIAARRVVIFHASHKFKHQL 102 >gi|90417317|ref|ZP_01225243.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2207] gi|90330902|gb|EAS46165.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2207] Length = 99 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + +E GL+++++ V ++EI + +++K+S F F ++ K SR Sbjct: 3 ALTKADLAEMLFEELGLNKREAKEIVEMFYSEISLALENNDSVKLSGFGNFELRDKKSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV FK LK R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFKPGQKLKARV 92 >gi|253996949|ref|YP_003049013.1| integration host factor subunit alpha [Methylotenera mobilis JLW8] gi|253983628|gb|ACT48486.1| integration host factor, alpha subunit [Methylotenera mobilis JLW8] Length = 97 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F E+ + G+++K+S F F ++QK R Sbjct: 2 TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRTALEAGDSVKLSGFGNFELRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK ++ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKV 91 >gi|319763191|ref|YP_004127128.1| integration host factor, alpha subunit [Alicycliphilus denitrificans BC] gi|330825385|ref|YP_004388688.1| integration host factor subunit alpha [Alicycliphilus denitrificans K601] gi|317117752|gb|ADV00241.1| integration host factor, alpha subunit [Alicycliphilus denitrificans BC] gi|329310757|gb|AEB85172.1| integration host factor, alpha subunit [Alicycliphilus denitrificans K601] Length = 117 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 55/92 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + + GL++++S V F+ I S V G+ +K+S F F ++ K Sbjct: 19 SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I+ RRVV F ASS LK++I Sbjct: 79 RPGRNPRTGETIPIEARRVVTFHASSKLKEQI 110 >gi|312621747|ref|YP_004023360.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202214|gb|ADQ45541.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] Length = 95 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +L+KSI+++ GL++KDS + + L I ++ +G+ +++ F TF VK++ R G Sbjct: 1 MSKEELIKSIAEKSGLTKKDSEKALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I V VFKA +LK+ + Sbjct: 61 RNPQTGEEILIPATVVPVFKAGKVLKEAV 89 >gi|93007121|ref|YP_581558.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] gi|123264368|sp|Q1Q8C9|IHFA_PSYCK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|92394799|gb|ABE76074.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] Length = 99 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+SD+++ + L+R++ V F+E+ +S + G+ +K+S F F +K K SR Sbjct: 3 TLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVV FK ++++ Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQV 92 >gi|332284513|ref|YP_004416424.1| integration host factor beta-subunit [Pusillimonas sp. T7-7] gi|330428466|gb|AEC19800.1| integration host factor beta-subunit [Pusillimonas sp. T7-7] Length = 106 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + GL+++++ V T F EI DS RG +K+S F F V+ K R Sbjct: 5 RTLTKAELAELLFDRVGLNKREAKDIVDTFFEEIRDSLARGVEVKLSGFGNFQVRDKPPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 65 PGRNPKTGEVIPIAARRVVTFHASQKLK 92 >gi|323144511|ref|ZP_08079112.1| integration host factor subunit alpha [Succinatimonas hippei YIT 12066] gi|322415724|gb|EFY06457.1| integration host factor subunit alpha [Succinatimonas hippei YIT 12066] Length = 94 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR+++ + + ++ + + FV F I S RGE +K++ F F +K K +R G Sbjct: 3 LTRAEITERLVTKYNFPKFRAQSFVDDFFESIAKSLERGEFVKLTGFGNFELKMKTARPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T QEV I PRRV FKA L+ RI Sbjct: 63 RNPKTGQEVTIAPRRVTTFKAGQKLRDRI 91 >gi|50086053|ref|YP_047563.1| integration host factor subunit alpha [Acinetobacter sp. ADP1] gi|81695762|sp|Q6F874|IHFA_ACIAD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49532029|emb|CAG69741.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter sp. ADP1] Length = 97 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+A ++R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRV 92 >gi|83647266|ref|YP_435701.1| integration host factor subunit alpha [Hahella chejuensis KCTC 2396] gi|123753568|sp|Q2SDJ8|IHFA_HAHCH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|83635309|gb|ABC31276.1| integration host factor, alpha subunit [Hahella chejuensis KCTC 2396] Length = 100 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F+E+ D+ E +K+S F F ++ K R Sbjct: 3 ALTKADMAERLYQEVGLNKREAKEMVEAFFDEVRDALSHNEQVKLSGFGNFDLRDKKQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK ++ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKAKV 92 >gi|192361986|ref|YP_001982984.1| integration host factor subunit alpha [Cellvibrio japonicus Ueda107] gi|190688151|gb|ACE85829.1| integration host factor, alpha subunit [Cellvibrio japonicus Ueda107] Length = 102 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + ++ GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 5 ALTKADLAEKLYEDLGLNKREAKELVELFFEEIRQALENNEEVKLSGFGNFELRDKSQRP 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 65 GRNPKTGEEIPISARRVVTFRPGQKLKARV 94 >gi|171058434|ref|YP_001790783.1| integration host factor subunit alpha [Leptothrix cholodnii SP-6] gi|170775879|gb|ACB34018.1| integration host factor, alpha subunit [Leptothrix cholodnii SP-6] Length = 113 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 11/113 (9%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F+ I ++ VRGE +K+S F F V++K Sbjct: 11 TPTLTKAELAELLFERLGLNKRESKDMVEAYFDFIHEALVRGEDVKLSGFGNFQVRRKAP 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 R GRN +T + + I R VV F AS LK + + T P G + Sbjct: 71 RPGRNPRTGEAIPIRARNVVTFHASHKLKAIVQGE-----------TPPPGEF 112 >gi|149191095|ref|ZP_01869355.1| integration host factor subunit alpha [Vibrio shilonii AK1] gi|148835123|gb|EDL52100.1| integration host factor subunit alpha [Vibrio shilonii AK1] Length = 97 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI S GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKSLESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|73666740|ref|YP_302756.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake] gi|72393881|gb|AAZ68158.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str. Jake] Length = 100 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 61/96 (63%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+T+S + + I+K+ GLSR+D+ V + +E+ ++ VR +KISSF TF +K Sbjct: 1 MTQTLTKSKIAEVINKDVGLSREDAASIVGEVLDEMINALVRDHILKISSFGTFKSYKKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R+GRN +T++ I R V F S ++K I +D Sbjct: 61 ARMGRNPKTSEAFVIKERNTVSFYPSILVKHSINND 96 >gi|71066548|ref|YP_265275.1| integration host factor subunit alpha [Psychrobacter arcticus 273-4] gi|123775561|sp|Q4FQ67|IHFA_PSYA2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|71039533|gb|AAZ19841.1| histone-like bacterial DNA-binding protein [Psychrobacter arcticus 273-4] Length = 99 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+SD+++ + L+R++ V F+E+ +S + G+ +K+S F F +K K SR Sbjct: 3 TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVV FK ++++ Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQV 92 >gi|56416375|ref|YP_153449.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries] gi|222474746|ref|YP_002563161.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Florida] gi|254994605|ref|ZP_05276795.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Mississippi] gi|255002715|ref|ZP_05277679.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Puerto Rico] gi|255003844|ref|ZP_05278645.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Virginia] gi|56387607|gb|AAV86194.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries] gi|222418882|gb|ACM48905.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Florida] Length = 98 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 57/93 (61%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+TR+ L I++E G+SR+D+ V + +E+ S VRG +KISSF TF V +K Sbjct: 1 MAQTLTRARLADEINREIGISREDALVLVGEILDEMVSSLVRGGLLKISSFGTFKVIRKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T ++ + V F S +K+ I Sbjct: 61 ERIGRNPKTLEQFIVKEHNTVTFCPSVTMKRLI 93 >gi|121605741|ref|YP_983070.1| integration host factor subunit alpha [Polaromonas naphthalenivorans CJ2] gi|166918514|sp|A1VR71|IHFA_POLNA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120594710|gb|ABM38149.1| integration host factor, alpha subunit [Polaromonas naphthalenivorans CJ2] Length = 123 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 55/92 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + ++ GL++++S + F I D V G+ +KIS F F ++ K Sbjct: 10 TPALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I+ RRVV F AS LK++I Sbjct: 70 RPGRNPRTGEAIPIESRRVVTFHASHKLKEQI 101 >gi|315126233|ref|YP_004068236.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas sp. SM9913] gi|315014747|gb|ADT68085.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas sp. SM9913] Length = 98 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + ++ G+++KD+ V F EI + +GE IK+S F F ++ K R Sbjct: 2 ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|222528663|ref|YP_002572545.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] gi|222455510|gb|ACM59772.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 91 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 58/86 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GL++KD+ + + + + ++ +GE +++ F +F V+++ RVG Sbjct: 1 MNKTELISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V VFKA +LK Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLK 86 >gi|169827490|ref|YP_001697648.1| DNA-binding protein HU [Lysinibacillus sphaericus C3-41] gi|168991978|gb|ACA39518.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Lysinibacillus sphaericus C3-41] Length = 93 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 56/86 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+++ GLS+KD+++ V +F+ I D+ +G+ +++ F F V+++ +R G Sbjct: 4 VNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 64 RNPQTGKEIEIAASKVPAFKPGKALK 89 >gi|77360840|ref|YP_340415.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas haloplanktis TAC125] gi|123588704|sp|Q3IIL3|IHFA_PSEHT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|76875751|emb|CAI86972.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas haloplanktis TAC125] Length = 99 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + ++ G+++KD+ V F EI + +GE IK+S F F ++ K R Sbjct: 2 ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|323137325|ref|ZP_08072403.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397312|gb|EFX99835.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 157 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR D+ +I + G+SR+++ R V + +E+ + V GE++K+ F +F V++K R Sbjct: 27 LTRQDIALAIHRRIEGVSRREAKRIVDCVIDEMVSTLVSGESLKLHDFGSFLVREKEERS 86 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T V I+ RRVVVFKAS +K Sbjct: 87 GRNPRTGAPVPIEARRVVVFKASPNMK 113 >gi|121610039|ref|YP_997846.1| integration host factor subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121554679|gb|ABM58828.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 108 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 57/92 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + + GL++++S + +F+ I S V G+ +K+S F F ++ K Sbjct: 11 TPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAP 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV+F ASS LK++I Sbjct: 71 RPGRNPRTGEAIPIQARRVVIFHASSKLKEQI 102 >gi|109898808|ref|YP_662063.1| integration host factor, alpha subunit [Pseudoalteromonas atlantica T6c] gi|332306904|ref|YP_004434755.1| integration host factor, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|122971862|sp|Q15SX9|IHFA_PSEA6 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|109701089|gb|ABG41009.1| integration host factor, alpha subunit [Pseudoalteromonas atlantica T6c] gi|332174233|gb|AEE23487.1| integration host factor, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 98 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F E+ ++ GE +K+S F F ++QK R Sbjct: 2 ALTKAEMAEHLFEKLGMNKRDAKDLVEAFFEEVREALESGEQVKLSGFGNFDLRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91 >gi|120554972|ref|YP_959323.1| integration host factor subunit alpha [Marinobacter aquaeolei VT8] gi|166918510|sp|A1U2B7|IHFA_MARAV RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120324821|gb|ABM19136.1| integration host factor, alpha subunit [Marinobacter aquaeolei VT8] Length = 100 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F+EI + E +K+S F F ++ K R Sbjct: 3 ALTKADMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK+++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKV 92 >gi|56460501|ref|YP_155782.1| nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina loihiensis L2TR] gi|81678356|sp|Q5QXL9|IHFA_IDILO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|56179511|gb|AAV82233.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina loihiensis L2TR] Length = 98 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + ++G+S++D+ V F EI + RGE +K+S F F ++ K R Sbjct: 2 ALTKAELAEVLFDKYGVSKQDAKVLVEDFFEEIRVALERGEQVKLSGFGNFELRTKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV FK K R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFKPGQKFKSRV 91 >gi|330445805|ref|ZP_08309457.1| integration host factor, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489996|dbj|GAA03954.1| integration host factor, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 98 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|308050479|ref|YP_003914045.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] gi|307632669|gb|ADN76971.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] Length = 96 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL + L D+ V T F EI + +GE +K+S F FH++ K R Sbjct: 2 SLTKADLTAHLVDHLHLKVTDAKVLVDTFFEEIRHTLEKGEEVKLSGFGVFHLRDKNPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E +I RRVV F A LK R+ Sbjct: 62 GRNPKTGEEHEITARRVVTFAAGGKLKGRV 91 >gi|323493296|ref|ZP_08098420.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323312459|gb|EGA65599.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 98 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|261252635|ref|ZP_05945208.1| integration host factor alpha subunit [Vibrio orientalis CIP 102891] gi|260936026|gb|EEX92015.1| integration host factor alpha subunit [Vibrio orientalis CIP 102891] Length = 98 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|15837345|ref|NP_298033.1| integration host factor subunit alpha [Xylella fastidiosa 9a5c] gi|14194874|sp|Q9PFD5|IHFA_XYLFA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9105633|gb|AAF83553.1|AE003916_7 integration host factor, alpha subunit [Xylella fastidiosa 9a5c] Length = 99 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V+ + E GL+++++ FV T F+ + D+ +G IK+S F F ++ K R Sbjct: 2 ALTKAEMVERLFDEVGLNKREAKEFVDTFFDLLRDALEQGRQIKLSGFGNFELRCKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F++ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRSGQKLKERV 91 >gi|312884548|ref|ZP_07744252.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309367860|gb|EFP95408.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 97 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEMFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|330814088|ref|YP_004358327.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487183|gb|AEA81588.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 100 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%) Query: 1 MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 MSK ITR L + +E GLS+ + FV TLF+ + + + + +KI+ F TF K Sbjct: 1 MSKVENITRQKLYDLVFQELGLSKISCSAFVDTLFDSLIANLKKDKKVKIALFGTFSKKN 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 K SRVGRN +T +E I R VV FKAS +L K+I Sbjct: 61 KKSRVGRNPKTKEEKTISSRNVVTFKASKLLIKKI 95 >gi|119472475|ref|ZP_01614574.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Alteromonadales bacterium TW-7] gi|332534256|ref|ZP_08410101.1| integration host factor alpha subunit [Pseudoalteromonas haloplanktis ANT/505] gi|119444912|gb|EAW26211.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Alteromonadales bacterium TW-7] gi|332036336|gb|EGI72807.1| integration host factor alpha subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 99 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + ++ G+++KD+ V F EI + +GE +K+S F F ++ K R Sbjct: 2 ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQVKLSGFGNFDLRDKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|119897376|ref|YP_932589.1| integration host factor subunit alpha [Azoarcus sp. BH72] gi|189044692|sp|A1K4E7|IHFA_AZOSB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119669789|emb|CAL93702.1| integration host factor alpha-subunit [Azoarcus sp. BH72] Length = 103 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 56/93 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+T+++L + + GL+++++ V F EI + RG+++K+S F F ++ K Sbjct: 1 MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T +E+ I RRVV F AS LK + Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFHASQKLKAAV 93 >gi|126653367|ref|ZP_01725471.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp. B14905] gi|299538558|ref|ZP_07051841.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1] gi|126589883|gb|EAZ84014.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp. B14905] gi|298726145|gb|EFI66737.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1] gi|327440783|dbj|BAK17148.1| bacterial nucleoid DNA-binding protein [Solibacillus silvestris StLB046] Length = 90 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 56/86 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+++ GLS+KD+++ V +F+ I D+ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGKEIEIAASKVPAFKPGKALK 86 >gi|86136033|ref|ZP_01054612.1| integration host factor beta subunit [Roseobacter sp. MED193] gi|85826907|gb|EAQ47103.1| integration host factor beta subunit [Roseobacter sp. MED193] Length = 94 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ D+ RG+ +++ F F VKQ+ SRV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKQRDSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVQVEEKHVPFFKTGKLLRDRL 90 >gi|68171301|ref|ZP_00544701.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88657660|ref|YP_506989.1| integration host factor, alpha subunit [Ehrlichia chaffeensis str. Arkansas] gi|67999282|gb|EAM85931.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599117|gb|ABD44586.1| integration host factor, alpha subunit [Ehrlichia chaffeensis str. Arkansas] Length = 100 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 62/96 (64%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+T+S + + I+++ GLSR+D++ V + +E+ ++ V+ +KISSF TF +K Sbjct: 1 MTQTLTKSKIAEVINRDVGLSREDASSVVGEILDEMLNALVKDRILKISSFGTFKSYKKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R+GRN +T++E I R V F S ++K I D Sbjct: 61 ARMGRNPKTSEEFVIKERYTVSFYPSILIKHSINSD 96 >gi|90410619|ref|ZP_01218635.1| integration host factor alpha subunit [Photobacterium profundum 3TCK] gi|90328860|gb|EAS45144.1| integration host factor alpha subunit [Photobacterium profundum 3TCK] Length = 98 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|92113928|ref|YP_573856.1| integration host factor, alpha subunit [Chromohalobacter salexigens DSM 3043] gi|123387450|sp|Q1QWK1|IHFA_CHRSD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91797018|gb|ABE59157.1| integration host factor, alpha subunit [Chromohalobacter salexigens DSM 3043] Length = 102 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + E G S++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKADLAEHLHAELGFSKREAKSMVEAFFEEIRSCLRENEQVKLSGFGNFDLRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F+ LK R+ D Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVED 94 >gi|260219592|emb|CBA26437.1| Integration host factor subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 118 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 55/95 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + ++ GL++++S + F+ I S V G +KIS F F ++ K Sbjct: 19 TPALTKAQLSDLLFEQIGLNKRESKDMIDAFFDLIASSLVDGTDVKISGFGNFQIRTKAP 78 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK++I D+ Sbjct: 79 RPGRNPRTGEAIPIQARRVVTFHASHKLKEQIQDE 113 >gi|259503208|ref|ZP_05746110.1| DNA-binding protein HU [Lactobacillus antri DSM 16041] gi|312869155|ref|ZP_07729329.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3] gi|259168865|gb|EEW53360.1| DNA-binding protein HU [Lactobacillus antri DSM 16041] gi|311095401|gb|EFQ53671.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3] Length = 91 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 52/84 (61%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GRN Sbjct: 4 KAELVSNVANATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87 >gi|146296415|ref|YP_001180186.1| histone family protein DNA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409991|gb|ABP66995.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 95 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +LVKSI+++ GL++KDS R + L I ++ +G+ +++ F TF VK++ R G Sbjct: 1 MSKEELVKSIAEKSGLTKKDSERALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I V +FKA LK+ + Sbjct: 61 RNPQTGEEILIPATVVPIFKAGKGLKEAV 89 >gi|262275830|ref|ZP_06053639.1| integration host factor alpha subunit [Grimontia hollisae CIP 101886] gi|262219638|gb|EEY70954.1| integration host factor alpha subunit [Grimontia hollisae CIP 101886] Length = 98 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFENVGMSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|74317031|ref|YP_314771.1| integration host factor subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|123731845|sp|Q3SK28|IHFA_THIDA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|74056526|gb|AAZ96966.1| integration host factor, alpha subunit [Thiobacillus denitrificans ATCC 25259] Length = 103 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 58/90 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL + + ++ GL+++++ V + F+EI + +G+ +K+S F F ++K R Sbjct: 3 TLTKADLAELLFEKVGLNKREAKDVVESFFDEIRLALEKGDIVKLSGFGNFQCREKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK ++ Sbjct: 63 GRNPKTGEEMPISARRVVTFHASQKLKSQV 92 >gi|262374865|ref|ZP_06068099.1| integration host factor, alpha subunit [Acinetobacter lwoffii SH145] gi|262309878|gb|EEY91007.1| integration host factor, alpha subunit [Acinetobacter lwoffii SH145] Length = 98 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|255320840|ref|ZP_05362014.1| integration host factor, alpha subunit [Acinetobacter radioresistens SK82] gi|262380267|ref|ZP_06073422.1| integration host factor, alpha subunit [Acinetobacter radioresistens SH164] gi|255302009|gb|EET81252.1| integration host factor, alpha subunit [Acinetobacter radioresistens SK82] gi|262298461|gb|EEY86375.1| integration host factor, alpha subunit [Acinetobacter radioresistens SH164] Length = 98 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|237653680|ref|YP_002889994.1| integration host factor subunit alpha [Thauera sp. MZ1T] gi|237624927|gb|ACR01617.1| integration host factor, alpha subunit [Thauera sp. MZ1T] Length = 101 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI + RG+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEQVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKAAV 91 >gi|89074399|ref|ZP_01160881.1| integration host factor alpha subunit [Photobacterium sp. SKA34] gi|90579644|ref|ZP_01235453.1| integration host factor alpha subunit [Vibrio angustum S14] gi|89049886|gb|EAR55427.1| integration host factor alpha subunit [Photobacterium sp. SKA34] gi|90439218|gb|EAS64400.1| integration host factor alpha subunit [Vibrio angustum S14] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFENVGLSKRDAKDTVEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|121594735|ref|YP_986631.1| integration host factor subunit alpha [Acidovorax sp. JS42] gi|222110652|ref|YP_002552916.1| integration host factor subunit alpha [Acidovorax ebreus TPSY] gi|120606815|gb|ABM42555.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|221730096|gb|ACM32916.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] Length = 116 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + + GL++++S V F+ I S V G+ +K+S F F ++ K Sbjct: 19 SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS+ LK++I Sbjct: 79 RPGRNPRTGEAIPIKARRVVTFHASTKLKEQI 110 >gi|256847159|ref|ZP_05552605.1| integration host factor, alpha subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715823|gb|EEU30798.1| integration host factor, alpha subunit [Lactobacillus coleohominis 101-4-CHN] Length = 91 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 52/84 (61%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GRN Sbjct: 4 KAELVSNVASATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87 >gi|323495666|ref|ZP_08100737.1| integration host factor subunit alpha [Vibrio sinaloensis DSM 21326] gi|323319301|gb|EGA72241.1| integration host factor subunit alpha [Vibrio sinaloensis DSM 21326] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKHGFSKRDAKETVEAFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|221066200|ref|ZP_03542305.1| integration host factor, alpha subunit [Comamonas testosteroni KF-1] gi|220711223|gb|EED66591.1| integration host factor, alpha subunit [Comamonas testosteroni KF-1] Length = 108 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL+++++ V F+ I V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F ASS LK+ I + G Sbjct: 70 RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107 >gi|84387194|ref|ZP_00990216.1| integration host factor alpha subunit [Vibrio splendidus 12B01] gi|86146820|ref|ZP_01065140.1| integration host factor alpha subunit [Vibrio sp. MED222] gi|148975883|ref|ZP_01812672.1| integration host factor subunit alpha [Vibrionales bacterium SWAT-3] gi|218709710|ref|YP_002417331.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32] gi|254803524|sp|B7VPF6|IHFA_VIBSL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|84378055|gb|EAP94916.1| integration host factor alpha subunit [Vibrio splendidus 12B01] gi|85835470|gb|EAQ53608.1| integration host factor alpha subunit [Vibrio sp. MED222] gi|145964628|gb|EDK29881.1| integration host factor subunit alpha [Vibrionales bacterium SWAT-3] gi|218322729|emb|CAV18905.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + G S++D+ V F E+ + GE +K+S F F +++K R Sbjct: 2 ALTKADLAENLFETLGYSKRDAKETVEVFFEEVRKALENGEQVKLSGFGNFDLREKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|262369831|ref|ZP_06063158.1| integration host factor alpha subunit [Acinetobacter johnsonii SH046] gi|262314870|gb|EEY95910.1| integration host factor alpha subunit [Acinetobacter johnsonii SH046] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|149911612|ref|ZP_01900224.1| integration host factor alpha subunit [Moritella sp. PE36] gi|149805333|gb|EDM65346.1| integration host factor alpha subunit [Moritella sp. PE36] Length = 97 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ + GLS+++S V F EI S E +KIS F F ++ KG R Sbjct: 2 ALTKADIAETLFNDVGLSKRESKEMVEAFFEEIRLSLEVNEQVKISGFGNFDLRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV FK LK ++ Sbjct: 62 GRNPKTGEDIPITARRVVTFKPGQKLKAKV 91 >gi|152996604|ref|YP_001341439.1| integration host factor subunit alpha [Marinomonas sp. MWYL1] gi|226709731|sp|A6VYH5|IHFA_MARMS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|150837528|gb|ABR71504.1| integration host factor, alpha subunit [Marinomonas sp. MWYL1] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 56/95 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL +++ GLS+KD+ V F+ + S + + +K+S F F V++K R Sbjct: 3 SLTKADLAENLVDSIGLSKKDAKDLVEGFFDVVRSSLIERQQVKLSGFGNFEVREKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I R VV F+ LK ++ D M+ Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVEDYMQ 97 >gi|326795746|ref|YP_004313566.1| Integration host factor subunit alpha [Marinomonas mediterranea MMB-1] gi|326546510|gb|ADZ91730.1| Integration host factor subunit alpha [Marinomonas mediterranea MMB-1] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 57/95 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL +++ + GL++KD+ V F I +S V E +K+S F F V++K R Sbjct: 3 SLTKADLAENLVETIGLTKKDAKDLVEGFFQVIRESLVDREQVKLSGFGNFEVREKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I R VV F+ LK ++ + M+ Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKAKVENYMQ 97 >gi|262374319|ref|ZP_06067595.1| integration host factor, alpha subunit [Acinetobacter junii SH205] gi|262310877|gb|EEY91965.1| integration host factor, alpha subunit [Acinetobacter junii SH205] Length = 98 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIGGEQVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|264679160|ref|YP_003279067.1| integration host factor, subunit alpha [Comamonas testosteroni CNB-2] gi|262209673|gb|ACY33771.1| integration host factor, alpha subunit [Comamonas testosteroni CNB-2] Length = 108 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL+++++ V F+ I V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F ASS LK+ I + G Sbjct: 70 RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGEGSG 107 >gi|260768664|ref|ZP_05877598.1| integration host factor alpha subunit [Vibrio furnissii CIP 102972] gi|260616694|gb|EEX41879.1| integration host factor alpha subunit [Vibrio furnissii CIP 102972] gi|315180366|gb|ADT87280.1| integration host factor subunit alpha [Vibrio furnissii NCTC 11218] Length = 97 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|227529195|ref|ZP_03959244.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540] gi|227350920|gb|EEJ41211.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540] Length = 91 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 52/84 (61%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GRN Sbjct: 4 KAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87 >gi|157161173|ref|YP_001458491.1| integration host factor subunit alpha [Escherichia coli HS] gi|166918503|sp|A8A0Q4|IHFA_ECOHS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157066853|gb|ABV06108.1| integration host factor, alpha subunit [Escherichia coli HS] Length = 99 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 TLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|221134660|ref|ZP_03560963.1| integration host factor, alpha subunit [Glaciecola sp. HTCC2999] Length = 99 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GL++KD+ V F EI S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKVGLNKKDTKDLVEAFFEEIKVSLENGEQVKLSGFGNFDLRTKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV FK LK R+ Sbjct: 62 GRNPKTGEDIPIKARRVVTFKPGQKLKSRV 91 >gi|312795978|ref|YP_004028900.1| integration host factor alpha-subunit [Burkholderia rhizoxinica HKI 454] gi|312167753|emb|CBW74756.1| Integration host factor alpha-subunit [Burkholderia rhizoxinica HKI 454] Length = 160 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 55/92 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 59 TPTLTKAELAELLFDQVGLNKREAKDMVEAFFEAIRDALENGESVKLSGFGNFQLRDKPQ 118 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK ++ Sbjct: 119 RPGRNPKTGEAIPIAARRVVTFHASQKLKAQV 150 >gi|27365694|ref|NP_761222.1| integration host factor subunit alpha [Vibrio vulnificus CMCP6] gi|37680150|ref|NP_934759.1| integration host factor subunit alpha [Vibrio vulnificus YJ016] gi|320156101|ref|YP_004188480.1| integration host factor subunit alpha [Vibrio vulnificus MO6-24/O] gi|33301286|sp|Q8DA35|IHFA_VIBVU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|61213547|sp|Q7MK44|IHFA_VIBVY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|27361843|gb|AAO10749.1| integration host factor, alpha subunit [Vibrio vulnificus CMCP6] gi|37198896|dbj|BAC94730.1| integration host factor, alpha subunit [Vibrio vulnificus YJ016] gi|319931413|gb|ADV86277.1| integration host factor alpha subunit [Vibrio vulnificus MO6-24/O] Length = 95 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|163739054|ref|ZP_02146467.1| integration host factor beta subunit [Phaeobacter gallaeciensis BS107] gi|163741705|ref|ZP_02149095.1| integration host factor subunit beta [Phaeobacter gallaeciensis 2.10] gi|254476014|ref|ZP_05089400.1| integration host factor, beta subunit [Ruegeria sp. R11] gi|161384878|gb|EDQ09257.1| integration host factor subunit beta [Phaeobacter gallaeciensis 2.10] gi|161387859|gb|EDQ12215.1| integration host factor beta subunit [Phaeobacter gallaeciensis BS107] gi|214030257|gb|EEB71092.1| integration host factor, beta subunit [Ruegeria sp. R11] Length = 94 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ D+ RG+ +++ F F VKQ+ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|78188542|ref|YP_378880.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] gi|78170741|gb|ABB27837.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] Length = 102 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 58/99 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ + GL++ ++ V LF I +S G I+I F +F+++QK Sbjct: 1 MGNTTTKADLVAVIAHKTGLTKNETEAVVDGLFESIIESLKAGRRIEIRGFGSFNIRQKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R RN +T + V++DP++V FK S K + + ++G Sbjct: 61 FRKARNPRTGESVEVDPKQVPAFKISKEFKLAVSESLKG 99 >gi|114319923|ref|YP_741606.1| integration host factor subunit alpha [Alkalilimnicola ehrlichii MLHE-1] gi|122312214|sp|Q0AAM1|IHFA_ALHEH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114226317|gb|ABI56116.1| integration host factor, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 101 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V + F EI + G +K+S F F ++ K R Sbjct: 2 ALTKADMAERLFEEVGLNKREAKELVESFFEEIRQALEDGVPVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKSRV 91 >gi|323143441|ref|ZP_08078124.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] gi|322416726|gb|EFY07377.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] Length = 91 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV SI+K+ GLS KDS + + D+ +G++I + F TF V+ + +RVG Sbjct: 1 MNKSQLVSSIAKQSGLSLKDSNAALNAFLETVKDTLAKGDSISLVGFGTFLVRDRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EVKI +V FKA K ++ Sbjct: 61 RNPRTKEEVKIPAVKVPAFKAGKPFKDKV 89 >gi|23099247|ref|NP_692713.1| non-specific DNA-binding protein [Oceanobacillus iheyensis HTE831] gi|22777476|dbj|BAC13748.1| non-specific DNA-binding protein [Oceanobacillus iheyensis HTE831] Length = 90 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ LS+KD+T+ V +F + DS GE +++ F F V+++ +R G Sbjct: 1 MNKTDLVNAVAEKSELSKKDATKAVDAVFESVMDSLKNGEKVQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALK 86 >gi|328912279|gb|AEB63875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Bacillus amyloliquefaciens LL3] Length = 91 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 56/86 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V +++ E G+++K++T V +F + ++ +GE+IKI TF V+++ +R G Sbjct: 1 MNKIEFVGAVANELGVTKKEATPNVEGVFKVLSETLAKGESIKIPGVGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN+QT +E++I +VV FK + LK Sbjct: 61 RNIQTGEEIEIPASKVVKFKPAKALK 86 >gi|296444587|ref|ZP_06886551.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296257855|gb|EFH04918.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 141 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 3 KTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR+ L +++ S LSR ++ + + F EI D+ VRGE +K+ SF +F+V+ K Sbjct: 38 RTLTRAALREAVYSCCPTLSRAEARQILDATFEEISDALVRGEPVKLRSFGSFNVRAKRE 97 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 RVGRN +T E I R+V+ FKAS +L Sbjct: 98 RVGRNPKTGVEAPICSRKVLTFKASPVL 125 >gi|260772974|ref|ZP_05881890.1| integration host factor alpha subunit [Vibrio metschnikovii CIP 69.14] gi|260612113|gb|EEX37316.1| integration host factor alpha subunit [Vibrio metschnikovii CIP 69.14] Length = 98 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|296133003|ref|YP_003640250.1| histone family protein DNA-binding protein [Thermincola sp. JR] gi|296031581|gb|ADG82349.1| histone family protein DNA-binding protein [Thermincola potens JR] Length = 94 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV ++++ L +KD + V +F I ++ RGE + F TF VKQ+ +R Sbjct: 1 MTKTDLVAQVAEKVSNLKKKDCEKAVNAVFQSIQEALARGEKAQFIGFGTFEVKQRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E+KI +V VFKA LK Sbjct: 61 GRNPQTGKEIKIPASKVPVFKAGKALK 87 >gi|83588958|ref|YP_428967.1| nucleoid protein Hbs [Moorella thermoacetica ATCC 39073] gi|83571872|gb|ABC18424.1| bacterial nucleoid protein Hbs [Moorella thermoacetica ATCC 39073] Length = 91 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ S++++ L++KD+ + V + I ++ +GE +++ F TF +K++ +RVG Sbjct: 1 MNKMDLIASVAEKTDLTKKDAEKVVNAVLASIEEALAQGEKVQLVGFGTFEIKERAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I R VFKA LK Sbjct: 61 RNPRTGEEIQIAATRAPVFKAGKALK 86 >gi|28199777|ref|NP_780091.1| integration host factor subunit alpha [Xylella fastidiosa Temecula1] gi|71275161|ref|ZP_00651448.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon] gi|71898242|ref|ZP_00680416.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|71901128|ref|ZP_00683234.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|170731152|ref|YP_001776585.1| integration host factor subunit alpha [Xylella fastidiosa M12] gi|182682527|ref|YP_001830687.1| integration host factor subunit alpha [Xylella fastidiosa M23] gi|32129614|sp|Q87AB7|IHFA_XYLFT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709761|sp|B2I9P2|IHFA_XYLF2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709762|sp|B0U5D7|IHFA_XYLFM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|28057898|gb|AAO29740.1| integration host factor, alpha subunit [Xylella fastidiosa Temecula1] gi|71163970|gb|EAO13685.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon] gi|71729092|gb|EAO31217.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|71731981|gb|EAO34038.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|167965945|gb|ACA12955.1| integration host factor, alpha subunit [Xylella fastidiosa M12] gi|182632637|gb|ACB93413.1| integration host factor, alpha subunit [Xylella fastidiosa M23] gi|307578805|gb|ADN62774.1| integration host factor subunit alpha [Xylella fastidiosa subsp. fastidiosa GB514] Length = 99 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V+ + E GL+++++ FV F+ + D+ +G+ IK+S F F ++ K R Sbjct: 2 ALTKAEMVERLFDEVGLNKREAKEFVDAFFDLLRDALEQGKEIKLSGFGNFELRCKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F++ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRSGQKLKERV 91 >gi|49075042|gb|AAT49447.1| PA2738 [synthetic construct] Length = 101 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ K + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEIAKRLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|264677561|ref|YP_003277467.1| integration host factor subunit beta [Comamonas testosteroni CNB-2] gi|299532471|ref|ZP_07045862.1| integration host factor, beta subunit [Comamonas testosteroni S44] gi|262208073|gb|ACY32171.1| integration host factor, beta subunit [Comamonas testosteroni CNB-2] gi|298719556|gb|EFI60522.1| integration host factor, beta subunit [Comamonas testosteroni S44] Length = 106 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG I+I F +F + + R+ Sbjct: 1 MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V++ +RV FK L++ + Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAV 90 >gi|94264269|ref|ZP_01288063.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94266795|ref|ZP_01290460.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94268979|ref|ZP_01291342.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93451393|gb|EAT02249.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93452538|gb|EAT03124.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93455314|gb|EAT05521.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 97 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR DL K+I+++ G S++ + V +F ++ D+ + E IK+ F TF+V+ K R G Sbjct: 6 LTRKDLAKAINEQMGFSQRSAADLVDVVFEQLKDTLMAEEPIKLVQFGTFNVRHKSPRQG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++I R ++ F+ S I+++RI Sbjct: 66 RNPRTGDPMEITKRSMISFRPSKIVRERI 94 >gi|57238839|ref|YP_179975.1| integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58578769|ref|YP_196981.1| integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58616828|ref|YP_196027.1| integration host factor alpha-subunit [Ehrlichia ruminantium str. Gardel] gi|57160918|emb|CAH57823.1| putative integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58416440|emb|CAI27553.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str. Gardel] gi|58417395|emb|CAI26599.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] Length = 99 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 59/96 (61%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+T+S + + I+++ GLSR+D+ V + +E+ ++ + +KISSF TF +K Sbjct: 1 MTETLTKSKIAEVINRDIGLSREDAASIVGEILDEMINALAKDRILKISSFGTFKSYKKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R+GRN +T +E I V F S ++K I DD Sbjct: 61 ARIGRNPKTAEEFIIKEHNTVSFYPSILVKHSINDD 96 >gi|296112369|ref|YP_003626307.1| integration host factor subunit alpha [Moraxella catarrhalis RH4] gi|295920063|gb|ADG60414.1| integration host factor subunit alpha [Moraxella catarrhalis RH4] gi|326561877|gb|EGE12212.1| integration host factor subunit alpha [Moraxella catarrhalis 7169] gi|326563312|gb|EGE13579.1| integration host factor subunit alpha [Moraxella catarrhalis 46P47B1] gi|326563427|gb|EGE13692.1| integration host factor subunit alpha [Moraxella catarrhalis 12P80B1] gi|326565966|gb|EGE16127.1| integration host factor subunit alpha [Moraxella catarrhalis 103P14B1] gi|326568900|gb|EGE18969.1| integration host factor subunit alpha [Moraxella catarrhalis BC1] gi|326569200|gb|EGE19261.1| integration host factor subunit alpha [Moraxella catarrhalis BC7] gi|326571873|gb|EGE21878.1| integration host factor subunit alpha [Moraxella catarrhalis BC8] gi|326575385|gb|EGE25310.1| integration host factor subunit alpha [Moraxella catarrhalis 101P30B1] gi|326576526|gb|EGE26434.1| integration host factor subunit alpha [Moraxella catarrhalis CO72] gi|326577997|gb|EGE27861.1| integration host factor subunit alpha [Moraxella catarrhalis O35E] Length = 98 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V ++ L+R+ + + V F EI S +G +K+S F F +K K R Sbjct: 3 ALTKADMVDELTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V I RRVV FKA L+ I Sbjct: 63 GRNPKTGESVPIQARRVVTFKAGQKLRGWI 92 >gi|299533562|ref|ZP_07046938.1| integration host factor subunit alpha [Comamonas testosteroni S44] gi|298718468|gb|EFI59449.1| integration host factor subunit alpha [Comamonas testosteroni S44] Length = 108 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL+++++ V F+ I V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVDGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F ASS LK+ I + G Sbjct: 70 RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107 >gi|304310704|ref|YP_003810302.1| Integration host factor alpha subunit [gamma proteobacterium HdN1] gi|301796437|emb|CBL44645.1| Integration host factor alpha subunit [gamma proteobacterium HdN1] Length = 100 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + +E GL+++++ V F+EI + E +K+S F F ++ K R Sbjct: 3 ALTKADLAERLFEELGLNKREAKEMVELFFDEIRVCLEQNEHVKLSGFGNFDLRNKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK+R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRV 92 >gi|221068236|ref|ZP_03544341.1| integration host factor, beta subunit [Comamonas testosteroni KF-1] gi|220713259|gb|EED68627.1| integration host factor, beta subunit [Comamonas testosteroni KF-1] Length = 107 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG I+I F +F + + R+ Sbjct: 1 MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V++ +RV FK L++ + Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAV 90 >gi|254509429|ref|ZP_05121509.1| integration host factor, alpha subunit [Vibrio parahaemolyticus 16] gi|219547647|gb|EED24692.1| integration host factor, alpha subunit [Vibrio parahaemolyticus 16] Length = 98 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKHGFSKRDAKETVEAFFEEVRKALEGGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARV 91 >gi|149374483|ref|ZP_01892257.1| integration host factor, alpha subunit [Marinobacter algicola DG893] gi|149361186|gb|EDM49636.1| integration host factor, alpha subunit [Marinobacter algicola DG893] gi|311693968|gb|ADP96841.1| integration host factor, alpha subunit [marine bacterium HP15] Length = 100 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F+EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK+++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKV 92 >gi|88799977|ref|ZP_01115548.1| integration host factor alpha subunit [Reinekea sp. MED297] gi|88777255|gb|EAR08459.1| integration host factor alpha subunit [Reinekea sp. MED297] Length = 100 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + +E GL+++++ V F EI +S V E +K+S F F ++ K R Sbjct: 2 ALTKAEMADRLYEELGLNKREAKEMVEIFFEEIRESLVHNEQVKLSGFGNFDLRDKRQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I RRVV F+ LK Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLK 88 >gi|15641235|ref|NP_230867.1| integration host factor subunit alpha [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591560|ref|ZP_01678819.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80] gi|147673436|ref|YP_001216792.1| integration host factor subunit alpha [Vibrio cholerae O395] gi|153801913|ref|ZP_01956499.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3] gi|153831069|ref|ZP_01983736.1| integration host factor, alpha subunit [Vibrio cholerae 623-39] gi|227081394|ref|YP_002809945.1| integration host factor, alpha subunit [Vibrio cholerae M66-2] gi|229505185|ref|ZP_04394695.1| integration host factor alpha subunit [Vibrio cholerae BX 330286] gi|229511144|ref|ZP_04400623.1| integration host factor alpha subunit [Vibrio cholerae B33] gi|229515602|ref|ZP_04405061.1| integration host factor alpha subunit [Vibrio cholerae TMA 21] gi|229518262|ref|ZP_04407706.1| integration host factor alpha subunit [Vibrio cholerae RC9] gi|229521341|ref|ZP_04410760.1| integration host factor alpha subunit [Vibrio cholerae TM 11079-80] gi|229525828|ref|ZP_04415233.1| integration host factor alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229529691|ref|ZP_04419081.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)] gi|229608205|ref|YP_002878853.1| integration host factor subunit alpha [Vibrio cholerae MJ-1236] gi|254848347|ref|ZP_05237697.1| integration host factor subunit alpha [Vibrio cholerae MO10] gi|255745625|ref|ZP_05419573.1| integration host factor alpha subunit [Vibrio cholera CIRS 101] gi|262159099|ref|ZP_06030211.1| integration host factor alpha subunit [Vibrio cholerae INDRE 91/1] gi|262169457|ref|ZP_06037149.1| integration host factor alpha subunit [Vibrio cholerae RC27] gi|297578821|ref|ZP_06940749.1| integration host factor subunit alpha [Vibrio cholerae RC385] gi|298498680|ref|ZP_07008487.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757] gi|14194867|sp|Q9KSN4|IHFA_VIBCH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|172047387|sp|A5F1W7|IHFA_VIBC3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803523|sp|C3LLR8|IHFA_VIBCM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9655703|gb|AAF94381.1| integration host factor, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546587|gb|EAX56783.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80] gi|124122558|gb|EAY41301.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3] gi|146315319|gb|ABQ19858.1| integration host factor, alpha subunit [Vibrio cholerae O395] gi|148873450|gb|EDL71585.1| integration host factor, alpha subunit [Vibrio cholerae 623-39] gi|227009282|gb|ACP05494.1| integration host factor, alpha subunit [Vibrio cholerae M66-2] gi|227013139|gb|ACP09349.1| integration host factor, alpha subunit [Vibrio cholerae O395] gi|229333465|gb|EEN98951.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)] gi|229339409|gb|EEO04426.1| integration host factor alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229341439|gb|EEO06442.1| integration host factor alpha subunit [Vibrio cholerae TM 11079-80] gi|229344977|gb|EEO09951.1| integration host factor alpha subunit [Vibrio cholerae RC9] gi|229347371|gb|EEO12331.1| integration host factor alpha subunit [Vibrio cholerae TMA 21] gi|229351109|gb|EEO16050.1| integration host factor alpha subunit [Vibrio cholerae B33] gi|229357408|gb|EEO22325.1| integration host factor alpha subunit [Vibrio cholerae BX 330286] gi|229370860|gb|ACQ61283.1| integration host factor alpha subunit [Vibrio cholerae MJ-1236] gi|254844052|gb|EET22466.1| integration host factor subunit alpha [Vibrio cholerae MO10] gi|255736700|gb|EET92097.1| integration host factor alpha subunit [Vibrio cholera CIRS 101] gi|262022270|gb|EEY40979.1| integration host factor alpha subunit [Vibrio cholerae RC27] gi|262029284|gb|EEY47936.1| integration host factor alpha subunit [Vibrio cholerae INDRE 91/1] gi|297536415|gb|EFH75248.1| integration host factor subunit alpha [Vibrio cholerae RC385] gi|297543013|gb|EFH79063.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757] gi|327483918|gb|AEA78325.1| Integration host factor alpha subunit [Vibrio cholerae LMA3894-4] Length = 98 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|331007938|ref|ZP_08331000.1| Integration host factor alpha subunit [gamma proteobacterium IMCC1989] gi|330418251|gb|EGG92855.1| Integration host factor alpha subunit [gamma proteobacterium IMCC1989] Length = 106 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + +E G +++++ V F EI ++ E +K+S F F ++ K R Sbjct: 9 ALTKAELAEKLYEELGFNKREAKELVELFFEEIRNALESNEQVKLSGFGNFDLRDKKQRP 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 69 GRNPKTGEEIPISARRVVTFRPGQKLKARV 98 >gi|199598701|ref|ZP_03212115.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001] gi|258508386|ref|YP_003171137.1| DNA-binding protein HU [Lactobacillus rhamnosus GG] gi|258539597|ref|YP_003174096.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus rhamnosus Lc 705] gi|199590389|gb|EDY98481.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001] gi|257148313|emb|CAR87286.1| DNA-binding protein HU [Lactobacillus rhamnosus GG] gi|257151273|emb|CAR90245.1| DNA-binding protein HU [Lactobacillus rhamnosus Lc 705] gi|259649700|dbj|BAI41862.1| DNA-binding protein [Lactobacillus rhamnosus GG] gi|328462383|gb|EGF34439.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus rhamnosus MTCC 5462] Length = 91 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GRN Sbjct: 4 KAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E+KI +V FK LK + Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDAV 90 >gi|53805111|ref|YP_113209.1| integration host factor subunit alpha [Methylococcus capsulatus str. Bath] gi|81682701|sp|Q60AY8|IHFA_METCA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|53758872|gb|AAU93163.1| integration host factor, alpha subunit [Methylococcus capsulatus str. Bath] Length = 110 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V+ + E GL+++D+ V F I S G ++K+S F F ++ K R Sbjct: 2 ALTKADMVERLFSELGLNKRDAKELVDQFFEVIKASLESGRSVKLSGFGNFDLRDKRQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I RRVV FKA LK Sbjct: 62 GRNPKTGEEIPITARRVVTFKAGQKLK 88 >gi|145220310|ref|YP_001131019.1| histone family protein DNA-binding protein [Prosthecochloris vibrioformis DSM 265] gi|145206474|gb|ABP37517.1| histone family protein DNA-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 102 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 58/99 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V +LF I DS G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNVIAHRTGLTKNETETVVDSLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R RN +T ++V ++P+ V FK S K+ + + ++G Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLKG 99 >gi|116494867|ref|YP_806601.1| nucleoid DNA-binding protein [Lactobacillus casei ATCC 334] gi|191638374|ref|YP_001987540.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23] gi|239631540|ref|ZP_04674571.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105017|gb|ABJ70159.1| bacterial nucleoid protein Hbs [Lactobacillus casei ATCC 334] gi|190712676|emb|CAQ66682.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23] gi|239526005|gb|EEQ65006.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 91 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GRN Sbjct: 4 KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E+KI +V FK LK + Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALKDAV 90 >gi|71908284|ref|YP_285871.1| integration host factor subunit alpha [Dechloromonas aromatica RCB] gi|123774328|sp|Q47CN0|IHFA2_DECAR RecName: Full=Integration host factor subunit alpha 2; Short=IHF-alpha 2 gi|71847905|gb|AAZ47401.1| Integration host factor, alpha subunit [Dechloromonas aromatica RCB] Length = 100 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 53/87 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI ++ G+ +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T QE+ I RRVV F AS LK Sbjct: 62 GRNPKTGQEIPITARRVVTFHASQKLK 88 >gi|119386494|ref|YP_917549.1| integration host factor subunit beta [Paracoccus denitrificans PD1222] gi|166918557|sp|A1B8K9|IHFB_PARDP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119377089|gb|ABL71853.1| integration host factor, beta subunit [Paracoccus denitrificans PD1222] Length = 95 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ IS+E L ++D R V T+F EI D+ RG+ +++ F F VK++ +R Sbjct: 1 MIRSELIQKISEENPHLFQRDVERIVNTVFEEIIDAMARGDRVELRGFGAFSVKKRDARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + V FK +L++R+ Sbjct: 61 GRNPRTGETVSVDEKHVPFFKTGKLLRERL 90 >gi|268592573|ref|ZP_06126794.1| integration host factor, alpha subunit [Providencia rettgeri DSM 1131] gi|291311987|gb|EFE52440.1| integration host factor, alpha subunit [Providencia rettgeri DSM 1131] Length = 98 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V T F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|212711444|ref|ZP_03319572.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens DSM 30120] gi|212685900|gb|EEB45428.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens DSM 30120] Length = 98 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V T F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|134104519|pdb|2IIE|A Chain A, Single Chain Integration Host Factor Protein (Scihf2) In Complex With Dna Length = 204 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 56/101 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K Sbjct: 44 SGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 103 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 R GRN +T +++ I RRVV F+ LK R+ + G + Sbjct: 104 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144 >gi|261344010|ref|ZP_05971655.1| integration host factor, alpha subunit [Providencia rustigianii DSM 4541] gi|282568401|gb|EFB73936.1| integration host factor, alpha subunit [Providencia rustigianii DSM 4541] Length = 98 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G+S++D+ V T F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEKLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRV 91 >gi|297538932|ref|YP_003674701.1| integration host factor subunit alpha [Methylotenera sp. 301] gi|297258279|gb|ADI30124.1| integration host factor, alpha subunit [Methylotenera sp. 301] Length = 97 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F E+ + G+++K+S F F +++K R Sbjct: 2 TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRIALEAGDSVKLSGFGNFELRKKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F AS LK ++ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKV 91 >gi|84683356|ref|ZP_01011259.1| integration host factor, beta subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668099|gb|EAQ14566.1| integration host factor, beta subunit [Rhodobacterales bacterium HTCC2654] Length = 93 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F EI ++ RG+ +++ F F VKQ+ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKQRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVDVEEKHVPFFKTGKLLRDRL 90 >gi|302878344|ref|YP_003846908.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] gi|302581133|gb|ADL55144.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] Length = 103 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 55/99 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T+T+++L + + GL+++++ V T F EI +GE++K+S F F ++ K Sbjct: 1 MITTLTKAELADLLFAKVGLNKREAKDMVETFFEEIRVQLEQGESVKLSGFGNFQLRDKP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T +E+ I RRVV F S LK + G Sbjct: 61 QRPGRNPKTGKEIPISARRVVTFHPSQKLKTLVEKSYHG 99 >gi|197284918|ref|YP_002150790.1| integration host factor subunit alpha [Proteus mirabilis HI4320] gi|227355321|ref|ZP_03839722.1| integration host factor alpha-subunit [Proteus mirabilis ATCC 29906] gi|226709739|sp|B4ETL2|IHFA_PROMH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|194682405|emb|CAR42265.1| integration host factor alpha-subunit [Proteus mirabilis HI4320] gi|227164545|gb|EEI49416.1| integration host factor alpha-subunit [Proteus mirabilis ATCC 29906] Length = 98 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAENLFEKLGVSKRDAKDLVEAFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|239827506|ref|YP_002950130.1| histone family protein DNA-binding protein [Geobacillus sp. WCH70] gi|239807799|gb|ACS24864.1| histone family protein DNA-binding protein [Geobacillus sp. WCH70] Length = 90 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ GLS+KD+T+ V +F I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAETSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALK 86 >gi|94310111|ref|YP_583321.1| integration host factor subunit alpha [Cupriavidus metallidurans CH34] gi|93353963|gb|ABF08052.1| integration host factor, alpha subunit 1 (IHF-alpha 1) [Cupriavidus metallidurans CH34] Length = 136 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + + GL++++S V F+ I ++ RG+++K+S F F ++ K R Sbjct: 39 TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALERGDSVKLSGFGNFQLRDKAQRP 98 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK ++ Sbjct: 99 GRNPKTGEIIPITARRVVTFHASQKLKAQV 128 >gi|291614191|ref|YP_003524348.1| integration host factor, subunit alpha [Sideroxydans lithotrophicus ES-1] gi|291584303|gb|ADE11961.1| integration host factor, alpha subunit [Sideroxydans lithotrophicus ES-1] Length = 102 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 55/96 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI +GE++K+S F F ++ K R Sbjct: 3 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRMQLEQGESVKLSGFGNFQLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F S LK + + G Sbjct: 63 GRNPKTGEEIPITARRVVTFHPSQKLKSMVEKNYHG 98 >gi|146282706|ref|YP_001172859.1| integration host factor subunit alpha [Pseudomonas stutzeri A1501] gi|166918518|sp|A4VM16|IHFA_PSEU5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|145570911|gb|ABP80017.1| integration host factor, alpha subunit [Pseudomonas stutzeri A1501] gi|327481045|gb|AEA84355.1| integration host factor subunit alpha [Pseudomonas stutzeri DSM 4166] Length = 100 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|270291292|ref|ZP_06197514.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4] gi|304385040|ref|ZP_07367386.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284] gi|270280138|gb|EFA25974.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4] gi|304329234|gb|EFL96454.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284] Length = 91 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 54/84 (64%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV++++K+ GL++KD+T V +F I D +G+ +++ F TF V+ + +R GRN Sbjct: 4 KAELVENVAKKTGLTKKDATAAVEAVFGSIQDDLKKGDKVQLIGFGTFEVRNRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FK LK Sbjct: 64 PQTGKEIEIAASKVPAFKPGKALK 87 >gi|194335610|ref|YP_002017404.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308087|gb|ACF42787.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 102 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 58/98 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT T++DLV I+ + GL++ ++ V +LF I DS G+ I+I F +F+++ K Sbjct: 1 MGKTTTKADLVNVIAHKTGLTKNETESVVDSLFESIIDSLKTGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V ++P+ V FK S K + + ++ Sbjct: 61 FRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLK 98 >gi|301066428|ref|YP_003788451.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang] gi|300438835|gb|ADK18601.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang] gi|327382402|gb|AEA53878.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei LC2W] gi|327385603|gb|AEA57077.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei BD-II] Length = 93 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GRN Sbjct: 6 KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 65 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E+KI +V FK LK + Sbjct: 66 PQTGAEIKIPASKVPAFKPGKALKDAV 92 >gi|325118559|emb|CBZ54110.1| putative DNA-binding protein HU [Neospora caninum Liverpool] Length = 221 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 53/96 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ +TR DLV S++ E LSR D R V L I S +G+ + IS F +F ++++G Sbjct: 103 SQVVTRKDLVASVAAELQLSRADVERTVGALLRHIAASLEQGQKVSISKFGSFGLRRRGE 162 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RV RN +T + + + F S +LK ++ D M Sbjct: 163 RVARNPRTGEPLNVPATTFPTFSFSKVLKDKVRDVM 198 >gi|290475541|ref|YP_003468429.1| integration host factor (IHF) subunit alpha, DNA-bending protein, DNA replication [Xenorhabdus bovienii SS-2004] gi|289174862|emb|CBJ81663.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Xenorhabdus bovienii SS-2004] Length = 98 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRHSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRV 91 >gi|229552183|ref|ZP_04440908.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus LMS2-1] gi|229314485|gb|EEN80458.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus LMS2-1] Length = 104 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GRN Sbjct: 17 KAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 76 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E+KI +V FK LK + Sbjct: 77 PQTGAEIKIPASKVPAFKPGKALKDAV 103 >gi|149926883|ref|ZP_01915142.1| Integration host factor, alpha subunit [Limnobacter sp. MED105] gi|149824435|gb|EDM83653.1| Integration host factor, alpha subunit [Limnobacter sp. MED105] Length = 122 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 54/89 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S ++T+++L + + GL+++++ FV F+EI + G+++K+S F F ++ K Sbjct: 30 SGSLTKAELAEMLFDSLGLNKREAKDFVDAFFDEIRTTLESGDSVKLSGFGNFQLRDKPQ 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T +E+ I RRVV F S LK Sbjct: 90 RPGRNPKTGEEIPIAARRVVTFHPSQKLK 118 >gi|26989194|ref|NP_744619.1| integration host factor subunit alpha [Pseudomonas putida KT2440] gi|148548427|ref|YP_001268529.1| integration host factor subunit alpha [Pseudomonas putida F1] gi|167034471|ref|YP_001669702.1| integration host factor subunit alpha [Pseudomonas putida GB-1] gi|170721157|ref|YP_001748845.1| integration host factor subunit alpha [Pseudomonas putida W619] gi|325276804|ref|ZP_08142506.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51] gi|60392431|sp|P0A126|IHFA_PSEPK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|60392432|sp|P0A127|IHFA_PSEPU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918517|sp|A5W5D5|IHFA_PSEP1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044704|sp|B0KKR2|IHFA_PSEPG RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709741|sp|B1J6V0|IHFA_PSEPW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|24984034|gb|AAN68083.1|AE016440_3 integration host factor, alpha subunit [Pseudomonas putida KT2440] gi|1435199|gb|AAB04060.1| IhfA [Pseudomonas putida] gi|148512485|gb|ABQ79345.1| integration host factor, alpha subunit [Pseudomonas putida F1] gi|166860959|gb|ABY99366.1| integration host factor, alpha subunit [Pseudomonas putida GB-1] gi|169759160|gb|ACA72476.1| integration host factor, alpha subunit [Pseudomonas putida W619] gi|324098064|gb|EGB96208.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51] Length = 100 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|78358253|ref|YP_389702.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220658|gb|ABB40007.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 91 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK++++++ LS+ ++ V T F+ + ++ V G+ ++I F +F VK+ VG Sbjct: 1 MNKSELVKTLAEDYNLSQDEAVAVVNTFFDSVREALVAGDRVEIRGFGSFKVKEYKGYVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T VK+ P+R+ VF+A +K+ + Sbjct: 61 RNPKTGDSVKVSPKRLPVFRAGKEMKELV 89 >gi|153212317|ref|ZP_01948105.1| integration host factor, alpha subunit [Vibrio cholerae 1587] gi|258620238|ref|ZP_05715277.1| integration host factor, alpha subunit [Vibrio mimicus VM573] gi|258624402|ref|ZP_05719349.1| integration host factor, alpha subunit [Vibrio mimicus VM603] gi|262171747|ref|ZP_06039425.1| integration host factor alpha subunit [Vibrio mimicus MB-451] gi|124116695|gb|EAY35515.1| integration host factor, alpha subunit [Vibrio cholerae 1587] gi|258583249|gb|EEW08051.1| integration host factor, alpha subunit [Vibrio mimicus VM603] gi|258587596|gb|EEW12306.1| integration host factor, alpha subunit [Vibrio mimicus VM573] gi|261892823|gb|EEY38809.1| integration host factor alpha subunit [Vibrio mimicus MB-451] Length = 98 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|40288405|gb|AAR84227.1| integration host factor alpha subunit [Pantoea stewartii subsp. stewartii DC283] Length = 99 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+C + GE +K+S F + K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVCRALENGEQVKLSGFGNSDLCDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPETGEDIPITARRVVTFRPGQKLKSRV 91 >gi|126736963|ref|ZP_01752698.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6] gi|126721548|gb|EBA18251.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6] Length = 94 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ D+ RG+ +++ F F VKQ+ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRL 90 >gi|308049413|ref|YP_003912979.1| integration host factor, alpha subunit [Ferrimonas balearica DSM 9799] gi|307631603|gb|ADN75905.1| integration host factor, alpha subunit [Ferrimonas balearica DSM 9799] Length = 101 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + + GL ++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADMAEHLIETLGLHKRDAKDVVEAFFEEIRLALETGEQVKLSGFGNFELRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK RI Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKTRI 91 >gi|218891082|ref|YP_002439948.1| integration host factor subunit alpha [Pseudomonas aeruginosa LESB58] gi|226709740|sp|B7V312|IHFA_PSEA8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|218771307|emb|CAW27072.1| integration host factor, alpha subunit [Pseudomonas aeruginosa LESB58] Length = 100 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + + E +K+S F F ++ K R Sbjct: 3 ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEQNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|226941667|ref|YP_002796741.1| integration host factor subunit alpha [Laribacter hongkongensis HLHK9] gi|226716594|gb|ACO75732.1| IhfA [Laribacter hongkongensis HLHK9] Length = 101 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 53/87 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + GLS+++S V + F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFDKVGLSKRESKDMVESFFEEIRVALEEGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I RRVV F AS LK Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLK 88 >gi|254447100|ref|ZP_05060567.1| integration host factor, alpha subunit [gamma proteobacterium HTCC5015] gi|198263239|gb|EDY87517.1| integration host factor, alpha subunit [gamma proteobacterium HTCC5015] Length = 92 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + E GL+++++ V F+EI ++ GE +K+S F F +++K R GRN +T Sbjct: 1 MAECLFDELGLNKREAKELVELFFDEIREALAEGEDVKLSGFGNFTLREKSQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPISARRVVTFRPGQKLKSRV 84 >gi|120611517|ref|YP_971195.1| integration host factor subunit alpha [Acidovorax citrulli AAC00-1] gi|120589981|gb|ABM33421.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] Length = 122 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + + GL++++S + F+ I V G+ +KIS F F ++ K Sbjct: 23 TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 82 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS+ LK++I Sbjct: 83 RPGRNPRTGEAIPIQARRVVTFHASTKLKEQI 114 >gi|269139156|ref|YP_003295857.1| integration host factor, alpha subunit [Edwardsiella tarda EIB202] gi|294636235|ref|ZP_06714648.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC 23685] gi|267984817|gb|ACY84646.1| integration host factor, alpha subunit [Edwardsiella tarda EIB202] gi|291090470|gb|EFE23031.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC 23685] gi|304559080|gb|ADM41744.1| Integration host factor alpha subunit [Edwardsiella tarda FL6-60] Length = 98 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|254429814|ref|ZP_05043521.1| integration host factor, alpha subunit [Alcanivorax sp. DG881] gi|196195983|gb|EDX90942.1| integration host factor, alpha subunit [Alcanivorax sp. DG881] Length = 100 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F EI S +K+S F F ++ K R Sbjct: 3 ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLENNIPVKLSGFGNFDLRDKSERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK+R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRV 92 >gi|261211051|ref|ZP_05925341.1| integration host factor alpha subunit [Vibrio sp. RC341] gi|262402428|ref|ZP_06078989.1| integration host factor alpha subunit [Vibrio sp. RC586] gi|260840026|gb|EEX66626.1| integration host factor alpha subunit [Vibrio sp. RC341] gi|262351210|gb|EEZ00343.1| integration host factor alpha subunit [Vibrio sp. RC586] Length = 98 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|259908572|ref|YP_002648928.1| integration host factor subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224964194|emb|CAX55701.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia pyrifoliae Ep1/96] gi|283478541|emb|CAY74457.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia pyrifoliae DSM 12163] gi|310767528|gb|ADP12478.1| integration host factor subunit alpha [Erwinia sp. Ejp617] Length = 99 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|326317193|ref|YP_004234865.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374029|gb|ADX46298.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 121 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + + GL++++S + F+ I V G+ +KIS F F ++ K Sbjct: 22 TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 81 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS+ LK++I Sbjct: 82 RPGRNPRTGEAIPIQARRVVTFHASTKLKEQI 113 >gi|284006261|emb|CBA71497.1| integration host factor alpha-subunit [Arsenophonus nasoniae] Length = 98 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSESLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKSQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKGRV 91 >gi|291617253|ref|YP_003519995.1| IhfA [Pantoea ananatis LMG 20103] gi|291152283|gb|ADD76867.1| IhfA [Pantoea ananatis LMG 20103] gi|327393707|dbj|BAK11129.1| integration host factor alpha- subunit IhfA [Pantoea ananatis AJ13355] Length = 100 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|317047874|ref|YP_004115522.1| integration host factor subunit alpha [Pantoea sp. At-9b] gi|316949491|gb|ADU68966.1| integration host factor, alpha subunit [Pantoea sp. At-9b] Length = 100 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|325982719|ref|YP_004295121.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212] gi|325532238|gb|ADZ26959.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212] Length = 98 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 55/97 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + GL+++++ V + + E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAELADLLFENVGLNKREAKDMVESFYEEVRTALQNGEGVKLSGFGNFQLRSKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +E+ I RRVV F AS LK + + G+ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKALVEKNYHGK 98 >gi|188533971|ref|YP_001907768.1| integration host factor subunit alpha [Erwinia tasmaniensis Et1/99] gi|292488135|ref|YP_003531012.1| integration host factor subunit alpha [Erwinia amylovora CFBP1430] gi|292899346|ref|YP_003538715.1| integration host factor alpha-subunit [Erwinia amylovora ATCC 49946] gi|300716465|ref|YP_003741268.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia billingiae Eb661] gi|226709728|sp|B2VEL2|IHFA_ERWT9 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|188029013|emb|CAO96881.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia tasmaniensis Et1/99] gi|291199194|emb|CBJ46308.1| integration host factor alpha-subunit [Erwinia amylovora ATCC 49946] gi|291553559|emb|CBA20604.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia amylovora CFBP1430] gi|299062301|emb|CAX59418.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia billingiae Eb661] gi|312172267|emb|CBX80524.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia amylovora ATCC BAA-2158] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|152970723|ref|YP_001335832.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579803|ref|YP_002237980.1| integration host factor, alpha subunit [Klebsiella pneumoniae 342] gi|238895229|ref|YP_002919964.1| integration host factor subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|288934890|ref|YP_003438949.1| integration host factor, subunit alpha [Klebsiella variicola At-22] gi|290509032|ref|ZP_06548403.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55] gi|166918509|sp|A6TAI1|IHFA_KLEP7 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709730|sp|B5XQD2|IHFA_KLEP3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|150955572|gb|ABR77602.1| integration host factor alpha subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568861|gb|ACI10637.1| integration host factor, alpha subunit [Klebsiella pneumoniae 342] gi|238547546|dbj|BAH63897.1| integration host factor alpha subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288889599|gb|ADC57917.1| integration host factor, alpha subunit [Klebsiella variicola At-22] gi|289778426|gb|EFD86423.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|304397622|ref|ZP_07379499.1| integration host factor, alpha subunit [Pantoea sp. aB] gi|308186652|ref|YP_003930783.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|304354794|gb|EFM19164.1| integration host factor, alpha subunit [Pantoea sp. aB] gi|308057162|gb|ADO09334.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] Length = 100 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|255659240|ref|ZP_05404649.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544] gi|260848694|gb|EEX68701.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544] Length = 91 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S++++ GL++KD+ + V +F I + V G+ +++ F TF VK++ +R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +TN+ ++I + FKA LK Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALK 86 >gi|332529089|ref|ZP_08405053.1| integration host factor subunit alpha [Hylemonella gracilis ATCC 19624] gi|332041312|gb|EGI77674.1| integration host factor subunit alpha [Hylemonella gracilis ATCC 19624] Length = 107 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 56/92 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + ++ GL++++S + F+ I + G+ +KIS F F ++ K + Sbjct: 10 TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLIAERLTEGQDVKISGFGNFQIRTKAA 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I+ R+VV F AS LK++I Sbjct: 70 RPGRNPRTGEAIPIEARKVVTFHASHKLKEQI 101 >gi|242239477|ref|YP_002987658.1| integration host factor subunit alpha [Dickeya dadantii Ech703] gi|242131534|gb|ACS85836.1| integration host factor, alpha subunit [Dickeya dadantii Ech703] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|227535136|ref|ZP_03965185.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187181|gb|EEI67248.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 129 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GRN Sbjct: 42 KAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGRN 101 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E+KI +V FK LK + Sbjct: 102 PQTGAEIKIPASKVPAFKPGKALKDAV 128 >gi|15802124|ref|NP_288146.1| integration host factor subunit alpha [Escherichia coli O157:H7 EDL933] gi|15831673|ref|NP_310446.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|16129668|ref|NP_416227.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|24112892|ref|NP_707402.1| integration host factor subunit alpha [Shigella flexneri 2a str. 301] gi|26247964|ref|NP_754004.1| integration host factor subunit alpha [Escherichia coli CFT073] gi|30063021|ref|NP_837192.1| integration host factor subunit alpha [Shigella flexneri 2a str. 2457T] gi|74311968|ref|YP_310387.1| integration host factor subunit alpha [Shigella sonnei Ss046] gi|82543885|ref|YP_407832.1| integration host factor subunit alpha [Shigella boydii Sb227] gi|82777060|ref|YP_403409.1| integration host factor subunit alpha [Shigella dysenteriae Sd197] gi|89108552|ref|AP_002332.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|91210926|ref|YP_540912.1| integration host factor subunit alpha [Escherichia coli UTI89] gi|110641834|ref|YP_669564.1| integration host factor subunit alpha [Escherichia coli 536] gi|110805478|ref|YP_688998.1| integration host factor subunit alpha [Shigella flexneri 5 str. 8401] gi|157159273|ref|YP_001463009.1| integration host factor subunit alpha [Escherichia coli E24377A] gi|168749471|ref|ZP_02774493.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168756713|ref|ZP_02781720.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168762224|ref|ZP_02787231.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168770473|ref|ZP_02795480.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168774987|ref|ZP_02799994.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168782127|ref|ZP_02807134.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168788108|ref|ZP_02813115.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|168800107|ref|ZP_02825114.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|170019938|ref|YP_001724892.1| integration host factor subunit alpha [Escherichia coli ATCC 8739] gi|170081371|ref|YP_001730691.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170681870|ref|YP_001743536.1| integration host factor subunit alpha [Escherichia coli SMS-3-5] gi|170768840|ref|ZP_02903293.1| integration host factor, alpha subunit [Escherichia albertii TW07627] gi|187732420|ref|YP_001880502.1| integration host factor subunit alpha [Shigella boydii CDC 3083-94] gi|188496090|ref|ZP_03003360.1| integration host factor, alpha subunit [Escherichia coli 53638] gi|191167868|ref|ZP_03029673.1| integration host factor, alpha subunit [Escherichia coli B7A] gi|191171631|ref|ZP_03033178.1| integration host factor, alpha subunit [Escherichia coli F11] gi|193065297|ref|ZP_03046369.1| integration host factor, alpha subunit [Escherichia coli E22] gi|193068941|ref|ZP_03049900.1| integration host factor, alpha subunit [Escherichia coli E110019] gi|194428516|ref|ZP_03061055.1| integration host factor, alpha subunit [Escherichia coli B171] gi|194435140|ref|ZP_03067374.1| integration host factor, alpha subunit [Shigella dysenteriae 1012] gi|194438513|ref|ZP_03070602.1| integration host factor, alpha subunit [Escherichia coli 101-1] gi|195937396|ref|ZP_03082778.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208810559|ref|ZP_03252435.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208816579|ref|ZP_03257699.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208820964|ref|ZP_03261284.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209399095|ref|YP_002270782.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209919072|ref|YP_002293156.1| integration host factor subunit alpha [Escherichia coli SE11] gi|215486931|ref|YP_002329362.1| integration host factor subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|217328779|ref|ZP_03444860.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218548716|ref|YP_002382507.1| integration host factor subunit alpha [Escherichia fergusonii ATCC 35469] gi|218554280|ref|YP_002387193.1| integration host factor subunit alpha [Escherichia coli IAI1] gi|218558582|ref|YP_002391495.1| integration host factor subunit alpha [Escherichia coli S88] gi|218689657|ref|YP_002397869.1| integration host factor subunit alpha [Escherichia coli ED1a] gi|218695274|ref|YP_002402941.1| integration host factor subunit alpha [Escherichia coli 55989] gi|218699720|ref|YP_002407349.1| integration host factor subunit alpha [Escherichia coli IAI39] gi|218705212|ref|YP_002412731.1| integration host factor subunit alpha [Escherichia coli UMN026] gi|227885866|ref|ZP_04003671.1| integration host factor subunit alpha [Escherichia coli 83972] gi|237705660|ref|ZP_04536141.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA] gi|238900927|ref|YP_002926723.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli BW2952] gi|253773333|ref|YP_003036164.1| integration host factor subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161772|ref|YP_003044880.1| integration host factor subunit alpha [Escherichia coli B str. REL606] gi|254793329|ref|YP_003078166.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|256018094|ref|ZP_05431959.1| integration host factor subunit alpha [Shigella sp. D9] gi|256022624|ref|ZP_05436489.1| integration host factor subunit alpha [Escherichia sp. 4_1_40B] gi|260844064|ref|YP_003221842.1| integration host factor, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|260855578|ref|YP_003229469.1| integration host factor, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|260868239|ref|YP_003234641.1| integration host factor, alpha subunit [Escherichia coli O111:H- str. 11128] gi|261227795|ref|ZP_05942076.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258040|ref|ZP_05950573.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. FRIK966] gi|283785064|ref|YP_003364929.1| Integration host factor alpha subunit [Citrobacter rodentium ICC168] gi|291282892|ref|YP_003499710.1| Integration host factor subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|293405211|ref|ZP_06649203.1| integration host factor subunit alpha [Escherichia coli FVEC1412] gi|293410028|ref|ZP_06653604.1| integration host factor [Escherichia coli B354] gi|293415031|ref|ZP_06657674.1| integration host factor [Escherichia coli B185] gi|293446087|ref|ZP_06662509.1| integration host factor [Escherichia coli B088] gi|297516677|ref|ZP_06935063.1| integration host factor subunit alpha [Escherichia coli OP50] gi|298380854|ref|ZP_06990453.1| integration host factor subunit alpha [Escherichia coli FVEC1302] gi|300818351|ref|ZP_07098561.1| integration host factor, alpha subunit [Escherichia coli MS 107-1] gi|300821414|ref|ZP_07101561.1| integration host factor, alpha subunit [Escherichia coli MS 119-7] gi|300898500|ref|ZP_07116837.1| integration host factor, alpha subunit [Escherichia coli MS 198-1] gi|300904568|ref|ZP_07122405.1| integration host factor, alpha subunit [Escherichia coli MS 84-1] gi|300917726|ref|ZP_07134375.1| integration host factor, alpha subunit [Escherichia coli MS 115-1] gi|300924754|ref|ZP_07140696.1| integration host factor, alpha subunit [Escherichia coli MS 182-1] gi|300930812|ref|ZP_07146184.1| integration host factor, alpha subunit [Escherichia coli MS 187-1] gi|300938954|ref|ZP_07153655.1| integration host factor, alpha subunit [Escherichia coli MS 21-1] gi|300951312|ref|ZP_07165156.1| integration host factor, alpha subunit [Escherichia coli MS 116-1] gi|300958601|ref|ZP_07170726.1| integration host factor, alpha subunit [Escherichia coli MS 175-1] gi|300987621|ref|ZP_07178293.1| integration host factor, alpha subunit [Escherichia coli MS 200-1] gi|300994425|ref|ZP_07180930.1| integration host factor, alpha subunit [Escherichia coli MS 45-1] gi|301025263|ref|ZP_07188828.1| integration host factor, alpha subunit [Escherichia coli MS 196-1] gi|301026993|ref|ZP_07190380.1| integration host factor, alpha subunit [Escherichia coli MS 69-1] gi|301050951|ref|ZP_07197800.1| integration host factor, alpha subunit [Escherichia coli MS 185-1] gi|301306645|ref|ZP_07212704.1| integration host factor, alpha subunit [Escherichia coli MS 124-1] gi|301327442|ref|ZP_07220677.1| integration host factor, alpha subunit [Escherichia coli MS 78-1] gi|301647903|ref|ZP_07247680.1| integration host factor, alpha subunit [Escherichia coli MS 146-1] gi|306815034|ref|ZP_07449190.1| integration host factor subunit alpha [Escherichia coli NC101] gi|307138372|ref|ZP_07497728.1| integration host factor subunit alpha [Escherichia coli H736] gi|307310717|ref|ZP_07590363.1| integration host factor, alpha subunit [Escherichia coli W] gi|309788459|ref|ZP_07683063.1| integration host factor, alpha subunit [Shigella dysenteriae 1617] gi|309793482|ref|ZP_07687909.1| integration host factor, alpha subunit [Escherichia coli MS 145-7] gi|312966915|ref|ZP_07781133.1| integration host factor, alpha subunit [Escherichia coli 2362-75] gi|331642310|ref|ZP_08343445.1| integration host factor, alpha subunit [Escherichia coli H736] gi|331647204|ref|ZP_08348298.1| integration host factor, alpha subunit [Escherichia coli M605] gi|331653113|ref|ZP_08354118.1| integration host factor, alpha subunit [Escherichia coli M718] gi|331657693|ref|ZP_08358655.1| integration host factor, alpha subunit [Escherichia coli TA206] gi|331663192|ref|ZP_08364102.1| integration host factor, alpha subunit [Escherichia coli TA143] gi|331668398|ref|ZP_08369246.1| integration host factor, alpha subunit [Escherichia coli TA271] gi|331673265|ref|ZP_08374033.1| integration host factor, alpha subunit [Escherichia coli TA280] gi|331677586|ref|ZP_08378261.1| integration host factor, alpha subunit [Escherichia coli H591] gi|331683219|ref|ZP_08383820.1| integration host factor, alpha subunit [Escherichia coli H299] gi|332279137|ref|ZP_08391550.1| integration host factor subunit alpha [Shigella sp. D9] gi|67466106|sp|P0A6X7|IHFA_ECOLI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|67466109|sp|P0A6X8|IHFA_ECOL6 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|67466110|sp|P0A6X9|IHFA_ECO57 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|67466111|sp|P0A6Y0|IHFA_SHIFL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|122958311|sp|Q0THB6|IHFA_ECOL5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123084460|sp|Q1RB83|IHFA_ECOUT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123342866|sp|Q0T4S2|IHFA_SHIF8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123742132|sp|Q32FI7|IHFA_SHIDS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123769448|sp|Q321K4|IHFA_SHIBS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123773516|sp|Q3Z260|IHFA_SHISS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918502|sp|A7ZMI0|IHFA_ECO24 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044701|sp|B1IPL5|IHFA_ECOLC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707374|sp|B7MAS3|IHFA_ECO45 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707854|sp|B5YQ00|IHFA_ECO5E RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709722|sp|B7NT64|IHFA_ECO7I RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709723|sp|B7M1C1|IHFA_ECO8A RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709724|sp|B1XG19|IHFA_ECODH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709725|sp|B7N550|IHFA_ECOLU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709726|sp|B6I8Q5|IHFA_ECOSE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709727|sp|B1LE18|IHFA_ECOSM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709729|sp|B7LQ77|IHFA_ESCF3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709755|sp|B2U390|IHFA_SHIB3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803514|sp|B7US95|IHFA_ECO27 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803515|sp|B7L6I5|IHFA_ECO55 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803516|sp|B7MVJ1|IHFA_ECO81 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|259491530|sp|C4ZYH4|IHFA_ECOBW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1942275|pdb|1IHF|A Chain A, Integration Host FactorDNA COMPLEX gi|34811459|pdb|1OUZ|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With A Variant H' Site (T44a) gi|34811464|pdb|1OWF|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With The Native H' Site gi|34811469|pdb|1OWG|A Chain A, Crystal Structure Of Wt Ihf Complexed With An Altered H' Site (T44a) gi|119389941|pdb|2HT0|A Chain A, Ihf Bound To Doubly Nicked Dna gi|12515723|gb|AAG56699.1|AE005394_8 integration host factor (IHF), alpha subunit; site specific recombination [Escherichia coli O157:H7 str. EDL933] gi|26108367|gb|AAN80569.1|AE016761_144 Integration host factor alpha-subunit [Escherichia coli CFT073] gi|43072|emb|CAA23566.1| unnamed protein product [Escherichia coli] gi|146347|gb|AAA51471.1| integration host factor alpha subunit [Escherichia coli] gi|1742792|dbj|BAA15480.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|1788005|gb|AAC74782.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|13361886|dbj|BAB35842.1| integration host factor IHF alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|24051836|gb|AAN43109.1| integration host factor (IHF), alpha subunit [Shigella flexneri 2a str. 301] gi|30041270|gb|AAP16999.1| integration host factor (IHF), alpha subunit [Shigella flexneri 2a str. 2457T] gi|68304092|gb|AAY89704.1| IhfA [Escherichia coli LW1655F+] gi|73855445|gb|AAZ88152.1| integration host factor (IHF), alpha subunit [Shigella sonnei Ss046] gi|81241208|gb|ABB61918.1| integration host factor, alpha subunit [Shigella dysenteriae Sd197] gi|81245296|gb|ABB66004.1| integration host factor, alpha subunit [Shigella boydii Sb227] gi|91072500|gb|ABE07381.1| integration host factor (IHF), alpha subunit [Escherichia coli UTI89] gi|110343426|gb|ABG69663.1| integration host factor alpha-subunit [Escherichia coli 536] gi|110615026|gb|ABF03693.1| integration host factor alpha subunit [Shigella flexneri 5 str. 8401] gi|157081303|gb|ABV21011.1| integration host factor, alpha subunit [Escherichia coli E24377A] gi|169754866|gb|ACA77565.1| integration host factor, alpha subunit [Escherichia coli ATCC 8739] gi|169889206|gb|ACB02913.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170122388|gb|EDS91319.1| integration host factor, alpha subunit [Escherichia albertii TW07627] gi|170519588|gb|ACB17766.1| integration host factor, alpha subunit [Escherichia coli SMS-3-5] gi|187429412|gb|ACD08686.1| integration host factor, alpha subunit [Shigella boydii CDC 3083-94] gi|187769469|gb|EDU33313.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188016292|gb|EDU54414.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|188491289|gb|EDU66392.1| integration host factor, alpha subunit [Escherichia coli 53638] gi|189000264|gb|EDU69250.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189356221|gb|EDU74640.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189360623|gb|EDU79042.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189367513|gb|EDU85929.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189371962|gb|EDU90378.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|189377579|gb|EDU95995.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|190902127|gb|EDV61871.1| integration host factor, alpha subunit [Escherichia coli B7A] gi|190907961|gb|EDV67553.1| integration host factor, alpha subunit [Escherichia coli F11] gi|192927091|gb|EDV81713.1| integration host factor, alpha subunit [Escherichia coli E22] gi|192957736|gb|EDV88180.1| integration host factor, alpha subunit [Escherichia coli E110019] gi|194413394|gb|EDX29677.1| integration host factor, alpha subunit [Escherichia coli B171] gi|194416604|gb|EDX32739.1| integration host factor, alpha subunit [Shigella dysenteriae 1012] gi|194422523|gb|EDX38521.1| integration host factor, alpha subunit [Escherichia coli 101-1] gi|195182902|dbj|BAG66472.1| alpha subunit of integration host factor [Escherichia coli O111:H-] gi|208725075|gb|EDZ74782.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208730922|gb|EDZ79611.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208741087|gb|EDZ88769.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209160495|gb|ACI37928.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209768898|gb|ACI82761.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768900|gb|ACI82762.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768902|gb|ACI82763.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768904|gb|ACI82764.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768906|gb|ACI82765.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209912331|dbj|BAG77405.1| integration host factor alpha subunit [Escherichia coli SE11] gi|215265003|emb|CAS09389.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318126|gb|EEC26553.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218352006|emb|CAU97738.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli 55989] gi|218356257|emb|CAQ88874.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia fergusonii ATCC 35469] gi|218361048|emb|CAQ98625.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli IAI1] gi|218365351|emb|CAR03072.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli S88] gi|218369706|emb|CAR17475.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli IAI39] gi|218427221|emb|CAR08107.2| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli ED1a] gi|218432309|emb|CAR13199.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli UMN026] gi|222033468|emb|CAP76209.1| Integration host factor subunit alpha [Escherichia coli LF82] gi|226900417|gb|EEH86676.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA] gi|227837439|gb|EEJ47905.1| integration host factor subunit alpha [Escherichia coli 83972] gi|238861521|gb|ACR63519.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli BW2952] gi|242377435|emb|CAQ32187.1| integration host factor (IHF), alpha subunit, subunit of IHF transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253324377|gb|ACT28979.1| integration host factor, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973673|gb|ACT39344.1| integration host factor subunit alpha [Escherichia coli B str. REL606] gi|253977867|gb|ACT43537.1| integration host factor subunit alpha [Escherichia coli BL21(DE3)] gi|254592729|gb|ACT72090.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|257754227|dbj|BAI25729.1| integration host factor, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257759211|dbj|BAI30708.1| integration host factor, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|257764595|dbj|BAI36090.1| integration host factor, alpha subunit [Escherichia coli O111:H- str. 11128] gi|260449165|gb|ACX39587.1| integration host factor, alpha subunit [Escherichia coli DH1] gi|281178783|dbj|BAI55113.1| integration host factor alpha subunit [Escherichia coli SE15] gi|281600923|gb|ADA73907.1| Integration host factor subunit alpha [Shigella flexneri 2002017] gi|282948518|emb|CBG88107.1| Integration host factor alpha subunit [Citrobacter rodentium ICC168] gi|284921633|emb|CBG34705.1| Integration host factor alpha subunit [Escherichia coli 042] gi|290762765|gb|ADD56726.1| Integration host factor subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|291322917|gb|EFE62345.1| integration host factor [Escherichia coli B088] gi|291427419|gb|EFF00446.1| integration host factor subunit alpha [Escherichia coli FVEC1412] gi|291432679|gb|EFF05658.1| integration host factor [Escherichia coli B185] gi|291470496|gb|EFF12980.1| integration host factor [Escherichia coli B354] gi|294490672|gb|ADE89428.1| integration host factor, alpha subunit [Escherichia coli IHE3034] gi|298278296|gb|EFI19810.1| integration host factor subunit alpha [Escherichia coli FVEC1302] gi|299880128|gb|EFI88339.1| integration host factor, alpha subunit [Escherichia coli MS 196-1] gi|300297405|gb|EFJ53790.1| integration host factor, alpha subunit [Escherichia coli MS 185-1] gi|300306101|gb|EFJ60621.1| integration host factor, alpha subunit [Escherichia coli MS 200-1] gi|300314726|gb|EFJ64510.1| integration host factor, alpha subunit [Escherichia coli MS 175-1] gi|300357852|gb|EFJ73722.1| integration host factor, alpha subunit [Escherichia coli MS 198-1] gi|300395233|gb|EFJ78771.1| integration host factor, alpha subunit [Escherichia coli MS 69-1] gi|300403481|gb|EFJ87019.1| integration host factor, alpha subunit [Escherichia coli MS 84-1] gi|300406271|gb|EFJ89809.1| integration host factor, alpha subunit [Escherichia coli MS 45-1] gi|300415127|gb|EFJ98437.1| integration host factor, alpha subunit [Escherichia coli MS 115-1] gi|300419042|gb|EFK02353.1| integration host factor, alpha subunit [Escherichia coli MS 182-1] gi|300449409|gb|EFK13029.1| integration host factor, alpha subunit [Escherichia coli MS 116-1] gi|300456153|gb|EFK19646.1| integration host factor, alpha subunit [Escherichia coli MS 21-1] gi|300461370|gb|EFK24863.1| integration host factor, alpha subunit [Escherichia coli MS 187-1] gi|300525917|gb|EFK46986.1| integration host factor, alpha subunit [Escherichia coli MS 119-7] gi|300528991|gb|EFK50053.1| integration host factor, alpha subunit [Escherichia coli MS 107-1] gi|300838107|gb|EFK65867.1| integration host factor, alpha subunit [Escherichia coli MS 124-1] gi|300845954|gb|EFK73714.1| integration host factor, alpha subunit [Escherichia coli MS 78-1] gi|301073960|gb|EFK88766.1| integration host factor, alpha subunit [Escherichia coli MS 146-1] gi|305851682|gb|EFM52135.1| integration host factor subunit alpha [Escherichia coli NC101] gi|306908895|gb|EFN39391.1| integration host factor, alpha subunit [Escherichia coli W] gi|307553734|gb|ADN46509.1| integration host factor [Escherichia coli ABU 83972] gi|307626801|gb|ADN71105.1| integration host factor subunit alpha [Escherichia coli UM146] gi|308123069|gb|EFO60331.1| integration host factor, alpha subunit [Escherichia coli MS 145-7] gi|308923841|gb|EFP69344.1| integration host factor, alpha subunit [Shigella dysenteriae 1617] gi|309701936|emb|CBJ01249.1| Integration host factor alpha subunit [Escherichia coli ETEC H10407] gi|312288379|gb|EFR16281.1| integration host factor, alpha subunit [Escherichia coli 2362-75] gi|312946313|gb|ADR27140.1| integration host factor subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|313649266|gb|EFS13700.1| integration host factor, alpha subunit [Shigella flexneri 2a str. 2457T] gi|315061017|gb|ADT75344.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli W] gi|315136353|dbj|BAJ43512.1| integration host factor subunit alpha [Escherichia coli DH1] gi|315257483|gb|EFU37451.1| integration host factor, alpha subunit [Escherichia coli MS 85-1] gi|315286439|gb|EFU45874.1| integration host factor, alpha subunit [Escherichia coli MS 110-3] gi|315290473|gb|EFU49847.1| integration host factor, alpha subunit [Escherichia coli MS 153-1] gi|315299755|gb|EFU58995.1| integration host factor, alpha subunit [Escherichia coli MS 16-3] gi|315618909|gb|EFU99492.1| integration host factor, alpha subunit [Escherichia coli 3431] gi|320173204|gb|EFW48415.1| Integration host factor alpha subunit [Shigella dysenteriae CDC 74-1112] gi|320181259|gb|EFW56178.1| Integration host factor alpha subunit [Shigella boydii ATCC 9905] gi|320185864|gb|EFW60615.1| Integration host factor alpha subunit [Shigella flexneri CDC 796-83] gi|320188400|gb|EFW63062.1| Integration host factor alpha subunit [Escherichia coli O157:H7 str. EC1212] gi|320194576|gb|EFW69207.1| Integration host factor alpha subunit [Escherichia coli WV_060327] gi|320197896|gb|EFW72504.1| Integration host factor alpha subunit [Escherichia coli EC4100B] gi|320641561|gb|EFX10949.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. G5101] gi|320646920|gb|EFX15753.1| integration host factor subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320652202|gb|EFX20500.1| integration host factor subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320657803|gb|EFX25565.1| integration host factor subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658378|gb|EFX26072.1| integration host factor subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320668275|gb|EFX35102.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|323153050|gb|EFZ39319.1| integration host factor, alpha subunit [Escherichia coli EPECa14] gi|323158490|gb|EFZ44506.1| integration host factor, alpha subunit [Escherichia coli E128010] gi|323169347|gb|EFZ55023.1| integration host factor, alpha subunit [Shigella sonnei 53G] gi|323175219|gb|EFZ60833.1| integration host factor, alpha subunit [Escherichia coli LT-68] gi|323180491|gb|EFZ66036.1| integration host factor, alpha subunit [Escherichia coli 1180] gi|323186271|gb|EFZ71623.1| integration host factor, alpha subunit [Escherichia coli 1357] gi|323186894|gb|EFZ72212.1| integration host factor, alpha subunit [Escherichia coli RN587/1] gi|323378411|gb|ADX50679.1| integration host factor, alpha subunit [Escherichia coli KO11] gi|323937315|gb|EGB33594.1| integration host protein [Escherichia coli E1520] gi|323940621|gb|EGB36812.1| integration host protein [Escherichia coli E482] gi|323948097|gb|EGB44088.1| integration host protein [Escherichia coli H120] gi|323952220|gb|EGB48093.1| integration host protein [Escherichia coli H252] gi|323956614|gb|EGB52352.1| integration host protein [Escherichia coli H263] gi|323962096|gb|EGB57692.1| integration host protein [Escherichia coli H489] gi|323968482|gb|EGB63888.1| integration host protein [Escherichia coli M863] gi|323973907|gb|EGB69079.1| integration host protein [Escherichia coli TA007] gi|323978104|gb|EGB73190.1| integration host protein [Escherichia coli TW10509] gi|324007099|gb|EGB76318.1| integration host factor, alpha subunit [Escherichia coli MS 57-2] gi|324011508|gb|EGB80727.1| integration host factor, alpha subunit [Escherichia coli MS 60-1] gi|324016465|gb|EGB85684.1| integration host factor, alpha subunit [Escherichia coli MS 117-3] gi|324113464|gb|EGC07439.1| integration host protein [Escherichia fergusonii B253] gi|324119198|gb|EGC13086.1| integration host protein [Escherichia coli E1167] gi|325497126|gb|EGC94985.1| integration host factor subunit alpha [Escherichia fergusonii ECD227] gi|326342080|gb|EGD65861.1| Integration host factor alpha subunit [Escherichia coli O157:H7 str. 1044] gi|326343632|gb|EGD67394.1| Integration host factor alpha subunit [Escherichia coli O157:H7 str. 1125] gi|327252829|gb|EGE64483.1| integration host factor, alpha subunit [Escherichia coli STEC_7v] gi|330911517|gb|EGH40027.1| integration host factor alpha subunit [Escherichia coli AA86] gi|331039108|gb|EGI11328.1| integration host factor, alpha subunit [Escherichia coli H736] gi|331043987|gb|EGI16123.1| integration host factor, alpha subunit [Escherichia coli M605] gi|331049211|gb|EGI21283.1| integration host factor, alpha subunit [Escherichia coli M718] gi|331055941|gb|EGI27950.1| integration host factor, alpha subunit [Escherichia coli TA206] gi|331058991|gb|EGI30968.1| integration host factor, alpha subunit [Escherichia coli TA143] gi|331063592|gb|EGI35503.1| integration host factor, alpha subunit [Escherichia coli TA271] gi|331069463|gb|EGI40850.1| integration host factor, alpha subunit [Escherichia coli TA280] gi|331074046|gb|EGI45366.1| integration host factor, alpha subunit [Escherichia coli H591] gi|331079434|gb|EGI50631.1| integration host factor, alpha subunit [Escherichia coli H299] gi|332090637|gb|EGI95732.1| integration host factor, alpha subunit [Shigella boydii 5216-82] gi|332093969|gb|EGI99022.1| integration host factor, alpha subunit [Shigella dysenteriae 155-74] gi|332096357|gb|EGJ01358.1| integration host factor, alpha subunit [Shigella boydii 3594-74] gi|332101489|gb|EGJ04835.1| integration host factor subunit alpha [Shigella sp. D9] gi|332343431|gb|AEE56765.1| integration host factor, alpha subunit IhfA [Escherichia coli UMNK88] gi|332758619|gb|EGJ88938.1| integration host factor, alpha subunit [Shigella flexneri 2747-71] gi|332762548|gb|EGJ92813.1| integration host factor, alpha subunit [Shigella flexneri 4343-70] gi|332767225|gb|EGJ97420.1| integration host factor, alpha subunit [Shigella flexneri 2930-71] gi|333003776|gb|EGK23312.1| integration host factor, alpha subunit [Shigella flexneri VA-6] gi|333004230|gb|EGK23761.1| integration host factor, alpha subunit [Shigella flexneri K-218] gi|333006576|gb|EGK26076.1| integration host factor, alpha subunit [Shigella flexneri K-272] gi|333018156|gb|EGK37458.1| integration host factor, alpha subunit [Shigella flexneri K-304] gi|333018795|gb|EGK38088.1| integration host factor, alpha subunit [Shigella flexneri K-227] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|251789564|ref|YP_003004285.1| integration host factor subunit alpha [Dickeya zeae Ech1591] gi|271500486|ref|YP_003333511.1| integration host factor subunit alpha [Dickeya dadantii Ech586] gi|307131171|ref|YP_003883187.1| integration host factor (IHF), DNA-binding protein, subunit alpha [Dickeya dadantii 3937] gi|585306|sp|P37982|IHFA_DICD3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|399668|emb|CAA52768.1| integration host factor alpha subunit [Erwinia chrysanthemi] gi|247538185|gb|ACT06806.1| integration host factor, alpha subunit [Dickeya zeae Ech1591] gi|270344041|gb|ACZ76806.1| integration host factor, alpha subunit [Dickeya dadantii Ech586] gi|306528700|gb|ADM98630.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Dickeya dadantii 3937] gi|1093152|prf||2103145A integration host factor Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|307545110|ref|YP_003897589.1| integration host factor subunit alpha [Halomonas elongata DSM 2581] gi|307217134|emb|CBV42404.1| integration host factor subunit alpha [Halomonas elongata DSM 2581] Length = 122 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + E GLS++++ V + F EI E +K+S F F ++ K R Sbjct: 25 ALTKAELAEHLHAELGLSKREAKSMVESFFEEIRGCLRENEQVKLSGFGNFDLRDKRERP 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK ++ Sbjct: 85 GRNPKTGEEIPISARRVVTFRPGQKLKSQV 114 >gi|260597643|ref|YP_003210214.1| integration host factor subunit alpha [Cronobacter turicensis z3032] gi|260216820|emb|CBA30309.1| Integration host factor subunit alpha [Cronobacter turicensis z3032] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|184155358|ref|YP_001843698.1| DNA-binding protein [Lactobacillus fermentum IFO 3956] gi|227515172|ref|ZP_03945221.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931] gi|260662129|ref|ZP_05863025.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|183226702|dbj|BAG27218.1| DNA-binding protein [Lactobacillus fermentum IFO 3956] gi|227086504|gb|EEI21816.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931] gi|260553512|gb|EEX26404.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 91 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 52/84 (61%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+++ +R GRN Sbjct: 4 KAELVTNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87 >gi|29376113|ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V583] gi|227518741|ref|ZP_03948790.1| DNA-binding protein HU [Enterococcus faecalis TX0104] gi|227553351|ref|ZP_03983400.1| DNA-binding protein HU [Enterococcus faecalis HH22] gi|229545834|ref|ZP_04434559.1| DNA-binding protein HU [Enterococcus faecalis TX1322] gi|229550026|ref|ZP_04438751.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200] gi|255972807|ref|ZP_05423393.1| DNA-binding protein II [Enterococcus faecalis T1] gi|255975863|ref|ZP_05426449.1| DNA-binding protein II [Enterococcus faecalis T2] gi|256619053|ref|ZP_05475899.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200] gi|256762479|ref|ZP_05503059.1| DNA-binding protein II [Enterococcus faecalis T3] gi|256853115|ref|ZP_05558485.1| DNA-binding protein HU [Enterococcus faecalis T8] gi|256958970|ref|ZP_05563141.1| DNA-binding protein II [Enterococcus faecalis DS5] gi|256961937|ref|ZP_05566108.1| DNA-binding protein II [Enterococcus faecalis Merz96] gi|256965135|ref|ZP_05569306.1| DNA-binding protein II [Enterococcus faecalis HIP11704] gi|257079001|ref|ZP_05573362.1| DNA-binding protein II [Enterococcus faecalis JH1] gi|257082560|ref|ZP_05576921.1| DNA-binding protein II [Enterococcus faecalis E1Sol] gi|257085193|ref|ZP_05579554.1| DNA-binding protein II [Enterococcus faecalis Fly1] gi|257086754|ref|ZP_05581115.1| DNA-binding protein II [Enterococcus faecalis D6] gi|257089875|ref|ZP_05584236.1| DNA-binding protein HU [Enterococcus faecalis CH188] gi|257416083|ref|ZP_05593077.1| DNA-binding protein II [Enterococcus faecalis AR01/DG] gi|257419286|ref|ZP_05596280.1| DNA-binding protein [Enterococcus faecalis T11] gi|257422629|ref|ZP_05599619.1| DNA-binding protein HU [Enterococcus faecalis X98] gi|293383005|ref|ZP_06628923.1| DNA-binding protein HU [Enterococcus faecalis R712] gi|293389506|ref|ZP_06633963.1| DNA-binding protein HU [Enterococcus faecalis S613] gi|294781353|ref|ZP_06746696.1| DNA-binding protein HU [Enterococcus faecalis PC1.1] gi|300860723|ref|ZP_07106810.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11] gi|307271028|ref|ZP_07552311.1| DNA-binding protein HU [Enterococcus faecalis TX4248] gi|307273235|ref|ZP_07554481.1| DNA-binding protein HU [Enterococcus faecalis TX0855] gi|307274972|ref|ZP_07556135.1| DNA-binding protein HU [Enterococcus faecalis TX2134] gi|307278084|ref|ZP_07559168.1| DNA-binding protein HU [Enterococcus faecalis TX0860] gi|307289095|ref|ZP_07569051.1| DNA-binding protein HU [Enterococcus faecalis TX0109] gi|307292006|ref|ZP_07571875.1| DNA-binding protein HU [Enterococcus faecalis TX0411] gi|312900750|ref|ZP_07760047.1| DNA-binding protein HU [Enterococcus faecalis TX0470] gi|312903297|ref|ZP_07762477.1| DNA-binding protein HU [Enterococcus faecalis TX0635] gi|312907524|ref|ZP_07766515.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512] gi|312910142|ref|ZP_07768989.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516] gi|312951483|ref|ZP_07770379.1| DNA-binding protein HU [Enterococcus faecalis TX0102] gi|29343575|gb|AAO81337.1| DNA-binding protein HU [Enterococcus faecalis V583] gi|227073822|gb|EEI11785.1| DNA-binding protein HU [Enterococcus faecalis TX0104] gi|227177520|gb|EEI58492.1| DNA-binding protein HU [Enterococcus faecalis HH22] gi|229304832|gb|EEN70828.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200] gi|229309033|gb|EEN75020.1| DNA-binding protein HU [Enterococcus faecalis TX1322] gi|255963825|gb|EET96301.1| DNA-binding protein II [Enterococcus faecalis T1] gi|255968735|gb|EET99357.1| DNA-binding protein II [Enterococcus faecalis T2] gi|256598580|gb|EEU17756.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200] gi|256683730|gb|EEU23425.1| DNA-binding protein II [Enterococcus faecalis T3] gi|256711574|gb|EEU26612.1| DNA-binding protein HU [Enterococcus faecalis T8] gi|256949466|gb|EEU66098.1| DNA-binding protein II [Enterococcus faecalis DS5] gi|256952433|gb|EEU69065.1| DNA-binding protein II [Enterococcus faecalis Merz96] gi|256955631|gb|EEU72263.1| DNA-binding protein II [Enterococcus faecalis HIP11704] gi|256987031|gb|EEU74333.1| DNA-binding protein II [Enterococcus faecalis JH1] gi|256990590|gb|EEU77892.1| DNA-binding protein II [Enterococcus faecalis E1Sol] gi|256993223|gb|EEU80525.1| DNA-binding protein II [Enterococcus faecalis Fly1] gi|256994784|gb|EEU82086.1| DNA-binding protein II [Enterococcus faecalis D6] gi|256998687|gb|EEU85207.1| DNA-binding protein HU [Enterococcus faecalis CH188] gi|257157911|gb|EEU87871.1| DNA-binding protein II [Enterococcus faecalis ARO1/DG] gi|257161114|gb|EEU91074.1| DNA-binding protein [Enterococcus faecalis T11] gi|257164453|gb|EEU94413.1| DNA-binding protein HU [Enterococcus faecalis X98] gi|291079670|gb|EFE17034.1| DNA-binding protein HU [Enterococcus faecalis R712] gi|291081123|gb|EFE18086.1| DNA-binding protein HU [Enterococcus faecalis S613] gi|294451583|gb|EFG20042.1| DNA-binding protein HU [Enterococcus faecalis PC1.1] gi|295112974|emb|CBL31611.1| bacterial nucleoid protein Hbs [Enterococcus sp. 7L76] gi|300849762|gb|EFK77512.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11] gi|306497004|gb|EFM66552.1| DNA-binding protein HU [Enterococcus faecalis TX0411] gi|306499804|gb|EFM69165.1| DNA-binding protein HU [Enterococcus faecalis TX0109] gi|306505481|gb|EFM74667.1| DNA-binding protein HU [Enterococcus faecalis TX0860] gi|306508420|gb|EFM77527.1| DNA-binding protein HU [Enterococcus faecalis TX2134] gi|306510220|gb|EFM79244.1| DNA-binding protein HU [Enterococcus faecalis TX0855] gi|306512526|gb|EFM81175.1| DNA-binding protein HU [Enterococcus faecalis TX4248] gi|310626552|gb|EFQ09835.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512] gi|310630449|gb|EFQ13732.1| DNA-binding protein HU [Enterococcus faecalis TX0102] gi|310633173|gb|EFQ16456.1| DNA-binding protein HU [Enterococcus faecalis TX0635] gi|311289415|gb|EFQ67971.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516] gi|311292231|gb|EFQ70787.1| DNA-binding protein HU [Enterococcus faecalis TX0470] gi|315027276|gb|EFT39208.1| DNA-binding protein HU [Enterococcus faecalis TX2137] gi|315029395|gb|EFT41327.1| DNA-binding protein HU [Enterococcus faecalis TX4000] gi|315033959|gb|EFT45891.1| DNA-binding protein HU [Enterococcus faecalis TX0017] gi|315036968|gb|EFT48900.1| DNA-binding protein HU [Enterococcus faecalis TX0027] gi|315144427|gb|EFT88443.1| DNA-binding protein HU [Enterococcus faecalis TX2141] gi|315147254|gb|EFT91270.1| DNA-binding protein HU [Enterococcus faecalis TX4244] gi|315150547|gb|EFT94563.1| DNA-binding protein HU [Enterococcus faecalis TX0012] gi|315152494|gb|EFT96510.1| DNA-binding protein HU [Enterococcus faecalis TX0031] gi|315155772|gb|EFT99788.1| DNA-binding protein HU [Enterococcus faecalis TX0043] gi|315158061|gb|EFU02078.1| DNA-binding protein HU [Enterococcus faecalis TX0312] gi|315160455|gb|EFU04472.1| DNA-binding protein HU [Enterococcus faecalis TX0645] gi|315164004|gb|EFU08021.1| DNA-binding protein HU [Enterococcus faecalis TX1302] gi|315169045|gb|EFU13062.1| DNA-binding protein HU [Enterococcus faecalis TX1341] gi|315169717|gb|EFU13734.1| DNA-binding protein HU [Enterococcus faecalis TX1342] gi|315172322|gb|EFU16339.1| DNA-binding protein HU [Enterococcus faecalis TX1346] gi|315575877|gb|EFU88068.1| DNA-binding protein HU [Enterococcus faecalis TX0309B] gi|315577717|gb|EFU89908.1| DNA-binding protein HU [Enterococcus faecalis TX0630] gi|315580529|gb|EFU92720.1| DNA-binding protein HU [Enterococcus faecalis TX0309A] gi|323480713|gb|ADX80152.1| DNA-binding protein HU 1 [Enterococcus faecalis 62] gi|327535122|gb|AEA93956.1| DNA-binding protein HU [Enterococcus faecalis OG1RF] gi|329571713|gb|EGG53394.1| DNA-binding protein HU-beta [Enterococcus faecalis TX1467] Length = 91 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 54/84 (64%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+++++ GL++KD+T V +F+ I ++ +GE +++ F F V+++ +R GRN Sbjct: 4 KAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIAASKVPAFKPGKALK 87 >gi|50121344|ref|YP_050511.1| integration host factor subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|227111539|ref|ZP_03825195.1| integration host factor subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327039|ref|ZP_03831063.1| integration host factor subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688281|ref|YP_003017471.1| integration host factor, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|81693249|sp|Q6D4H4|IHFA_ERWCT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|259491532|sp|C6DFZ2|IHFA_PECCP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49611870|emb|CAG75319.1| integration host factor alpha-subunit [Pectobacterium atrosepticum SCRI1043] gi|251754859|gb|ACT12935.1| integration host factor, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 98 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|16760555|ref|NP_456172.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764690|ref|NP_460305.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141684|ref|NP_805026.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413674|ref|YP_150749.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179928|ref|YP_216345.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157145985|ref|YP_001453304.1| integration host factor subunit alpha [Citrobacter koseri ATCC BAA-895] gi|161614253|ref|YP_001588218.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551702|ref|ZP_02345456.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994355|ref|ZP_02575447.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233523|ref|ZP_02658581.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239546|ref|ZP_02664604.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240842|ref|ZP_02665774.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263840|ref|ZP_02685813.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463260|ref|ZP_02697191.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822198|ref|ZP_02834198.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443596|ref|YP_002040596.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447585|ref|YP_002045346.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469176|ref|ZP_03075160.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736601|ref|YP_002114356.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249705|ref|YP_002146698.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265740|ref|ZP_03165814.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362598|ref|YP_002142235.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244241|ref|YP_002215787.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390104|ref|ZP_03216715.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927937|ref|ZP_03219138.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352938|ref|YP_002226739.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857154|ref|YP_002243805.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022625|ref|ZP_03337072.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213160963|ref|ZP_03346673.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421813|ref|ZP_03354879.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426326|ref|ZP_03359076.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586389|ref|ZP_03368215.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213618534|ref|ZP_03372360.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857558|ref|ZP_03384529.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584149|ref|YP_002637947.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910845|ref|ZP_04654682.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289806332|ref|ZP_06536961.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|60392433|sp|P0A1S0|IHFA_SALTY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|60392434|sp|P0A1S1|IHFA_SALTI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|75505782|sp|Q57PU7|IHFA_SALCH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81677883|sp|Q5PH86|IHFA_SALPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918501|sp|A8AHA5|IHFA_CITK8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044706|sp|A9N236|IHFA_SALPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709745|sp|B5F7F6|IHFA_SALA4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709746|sp|B5FJA2|IHFA_SALDC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709747|sp|B5QVW2|IHFA_SALEP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709748|sp|B5RAW7|IHFA_SALG2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709749|sp|B4TGH7|IHFA_SALHS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709750|sp|B4T4N4|IHFA_SALNS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709751|sp|B5BA36|IHFA_SALPK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709752|sp|B4TUF6|IHFA_SALSV RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803520|sp|C0Q640|IHFA_SALPC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|25294356|pir||AD0705 integration host factor alpha-chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419858|gb|AAL20264.1| integration host factor (IHF), alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502851|emb|CAD02013.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29137312|gb|AAO68875.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127931|gb|AAV77437.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127561|gb|AAX65264.1| integration host factor (IHF), alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157083190|gb|ABV12868.1| hypothetical protein CKO_01739 [Citrobacter koseri ATCC BAA-895] gi|161363617|gb|ABX67385.1| hypothetical protein SPAB_01998 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402259|gb|ACF62481.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405889|gb|ACF66108.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455540|gb|EDX44379.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712103|gb|ACF91324.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634129|gb|EDX52481.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094075|emb|CAR59575.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213408|gb|ACH50805.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243995|gb|EDY26615.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287774|gb|EDY27164.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938757|gb|ACH76090.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602549|gb|EDZ01095.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323279|gb|EDZ08475.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272719|emb|CAR37635.1| Integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323612|gb|EDZ11451.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327760|gb|EDZ14524.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332324|gb|EDZ19088.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339460|gb|EDZ26224.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341281|gb|EDZ28045.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347544|gb|EDZ34175.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708957|emb|CAR33287.1| Integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468676|gb|ACN46506.1| integration host factor alpha subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246548|emb|CBG24358.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993220|gb|ACY88105.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157876|emb|CBW17370.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912324|dbj|BAJ36298.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086181|emb|CBY95955.1| Integration host factor subunit alpha IHF-alpha [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223967|gb|EFX49030.1| Integration host factor alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616724|gb|EFY13633.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620017|gb|EFY16890.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622327|gb|EFY19172.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627851|gb|EFY24641.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633051|gb|EFY29794.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636703|gb|EFY33406.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641271|gb|EFY37912.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645260|gb|EFY41789.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650201|gb|EFY46615.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655775|gb|EFY52077.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660101|gb|EFY56340.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665332|gb|EFY61520.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669590|gb|EFY65738.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673516|gb|EFY69618.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677442|gb|EFY73506.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679893|gb|EFY75932.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687365|gb|EFY83337.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714394|gb|EFZ05965.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129610|gb|ADX17040.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192483|gb|EFZ77713.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198662|gb|EFZ83763.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204090|gb|EFZ89104.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208709|gb|EFZ93647.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210222|gb|EFZ95121.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217685|gb|EGA02400.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220078|gb|EGA04545.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223495|gb|EGA07821.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229487|gb|EGA13610.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232710|gb|EGA16806.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240251|gb|EGA24295.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242761|gb|EGA26782.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249077|gb|EGA32996.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252784|gb|EGA36621.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255606|gb|EGA39362.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260117|gb|EGA43742.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267119|gb|EGA50604.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271557|gb|EGA54978.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623534|gb|EGE29879.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628011|gb|EGE34354.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988227|gb|AEF07210.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|239814882|ref|YP_002943792.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|239801459|gb|ACS18526.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] Length = 123 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + ++ GL++++S V F+ I +S + G +KIS F F ++ K Sbjct: 13 TPALTKAHLADLLFEQIGLNKRESKDMVEAFFDLIANSLIEGTDVKISGFGNFQIRVKAP 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRV F AS+ LK++I Sbjct: 73 RPGRNPRTGEAIPIGERRVATFHASAKLKEQI 104 >gi|331701407|ref|YP_004398366.1| histone family protein DNA-binding protein [Lactobacillus buchneri NRRL B-30929] gi|329128750|gb|AEB73303.1| histone family protein DNA-binding protein [Lactobacillus buchneri NRRL B-30929] Length = 91 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ GL++KD+T V +F I S +G+ +++ F F V+Q+ +R GRN Sbjct: 4 KAELVTNVAAATGLTKKDATSAVDAVFESIQASLAKGDKVQLIGFGNFEVRQRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT QE++I +V FK LK Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALK 87 >gi|312969741|ref|ZP_07783924.1| integration host factor, alpha subunit [Escherichia coli 1827-70] gi|310338026|gb|EFQ03115.1| integration host factor, alpha subunit [Escherichia coli 1827-70] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|311279402|ref|YP_003941633.1| integration host factor, alpha subunit [Enterobacter cloacae SCF1] gi|308748597|gb|ADO48349.1| integration host factor, alpha subunit [Enterobacter cloacae SCF1] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|229018912|ref|ZP_04175755.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|229098192|ref|ZP_04229139.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|229104286|ref|ZP_04234955.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|229117210|ref|ZP_04246588.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228666110|gb|EEL21574.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228678984|gb|EEL33192.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|228685090|gb|EEL39021.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|228742355|gb|EEL92512.1| DNA-binding protein HU [Bacillus cereus AH1273] Length = 93 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 58/91 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92 >gi|156934283|ref|YP_001438199.1| integration host factor subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|166918505|sp|A7MNY7|IHFA_ENTS8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|156532537|gb|ABU77363.1| hypothetical protein ESA_02114 [Cronobacter sakazakii ATCC BAA-894] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|163734570|ref|ZP_02142009.1| integration host factor subunit beta [Roseobacter litoralis Och 149] gi|161392063|gb|EDQ16393.1| integration host factor subunit beta [Roseobacter litoralis Och 149] Length = 94 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ D+ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTDAMARGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|15597934|ref|NP_251428.1| integration host factor subunit alpha [Pseudomonas aeruginosa PAO1] gi|107102269|ref|ZP_01366187.1| hypothetical protein PaerPA_01003326 [Pseudomonas aeruginosa PACS2] gi|116050728|ref|YP_790451.1| integration host factor subunit alpha [Pseudomonas aeruginosa UCBPP-PA14] gi|152984628|ref|YP_001347876.1| integration host factor subunit alpha [Pseudomonas aeruginosa PA7] gi|254235716|ref|ZP_04929039.1| integration host factor, alpha subunit [Pseudomonas aeruginosa C3719] gi|254241191|ref|ZP_04934513.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 2192] gi|296388799|ref|ZP_06878274.1| integration host factor subunit alpha [Pseudomonas aeruginosa PAb1] gi|313107807|ref|ZP_07793981.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 39016] gi|2495247|sp|Q51472|IHFA_PSEAE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|122259853|sp|Q02NN5|IHFA_PSEAB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918515|sp|A6V491|IHFA_PSEA7 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9948816|gb|AAG06126.1|AE004702_3 integration host factor, alpha subunit [Pseudomonas aeruginosa PAO1] gi|535711|gb|AAA65949.1| integration host factor alpha-subunit [Pseudomonas aeruginosa] gi|115585949|gb|ABJ11964.1| integration host factor, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126167647|gb|EAZ53158.1| integration host factor, alpha subunit [Pseudomonas aeruginosa C3719] gi|126194569|gb|EAZ58632.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 2192] gi|150959786|gb|ABR81811.1| integration host factor, alpha subunit [Pseudomonas aeruginosa PA7] gi|310880483|gb|EFQ39077.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 39016] Length = 100 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|145638882|ref|ZP_01794490.1| integration host factor alpha-subunit [Haemophilus influenzae PittII] gi|145271854|gb|EDK11763.1| integration host factor alpha-subunit [Haemophilus influenzae PittII] gi|301170051|emb|CBW29655.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus influenzae 10810] gi|309750859|gb|ADO80843.1| Integration host factor, alpha subunit [Haemophilus influenzae R2866] Length = 96 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92 >gi|237731275|ref|ZP_04561756.1| integration host factor subunit alpha [Citrobacter sp. 30_2] gi|283833385|ref|ZP_06353126.1| integration host factor, alpha subunit [Citrobacter youngae ATCC 29220] gi|226906814|gb|EEH92732.1| integration host factor subunit alpha [Citrobacter sp. 30_2] gi|291071034|gb|EFE09143.1| integration host factor, alpha subunit [Citrobacter youngae ATCC 29220] Length = 99 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|218961994|ref|YP_001741769.1| DNA-binding protein HU (DNA-binding protein II) (TL29) [Candidatus Cloacamonas acidaminovorans] gi|167730651|emb|CAO81563.1| DNA-binding protein HU (DNA-binding protein II) (TL29) [Candidatus Cloacamonas acidaminovorans] Length = 95 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLVK IS+ G+ RKD V L I DS +G I+I F TF +K + RVG Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T+Q+V + R V FK S K +++ Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVN 91 >gi|189426728|ref|YP_001953904.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189422987|gb|ACD97384.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 93 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ L++ ++++ ++ KD+ V L I + GE++KI+ F F VK+K +R Sbjct: 2 ALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + + I+PR+V+ FK S +L++ I Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAI 91 >gi|326316778|ref|YP_004234450.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373614|gb|ADX45883.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 136 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I++ F +F V ++ R Sbjct: 27 PMTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPR 86 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN ++ + V I +RV FK L++ + Sbjct: 87 MGRNPRSGEAVHIPEKRVPHFKPGKALREAV 117 >gi|261868043|ref|YP_003255965.1| integration host factor subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|293389947|ref|ZP_06634281.1| integration host factor, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413375|gb|ACX82746.1| integration host factor, alpha subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950481|gb|EFE00600.1| integration host factor, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 98 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F LS++++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRV 91 >gi|161503552|ref|YP_001570664.1| integration host factor subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189044705|sp|A9MFB7|IHFA_SALAR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|160864899|gb|ABX21522.1| hypothetical protein SARI_01630 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 99 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|146311386|ref|YP_001176460.1| integration host factor subunit alpha [Enterobacter sp. 638] gi|261339521|ref|ZP_05967379.1| integration host factor, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|166918504|sp|A4W9M9|IHFA_ENT38 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|145318262|gb|ABP60409.1| integration host factor, alpha subunit [Enterobacter sp. 638] gi|288318334|gb|EFC57272.1| integration host factor, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|295096105|emb|CBK85195.1| integration host factor, alpha subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 99 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|262044127|ref|ZP_06017202.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038526|gb|EEW39722.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 99 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|262165483|ref|ZP_06033220.1| integration host factor alpha subunit [Vibrio mimicus VM223] gi|262025199|gb|EEY43867.1| integration host factor alpha subunit [Vibrio mimicus VM223] Length = 98 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEDLFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|296102760|ref|YP_003612906.1| integration host factor subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057219|gb|ADF61957.1| integration host factor subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 99 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|47705|emb|CAA34713.1| integration host factor (AA 1-99) [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 99 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFGLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|52080788|ref|YP_079579.1| non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component [Bacillus licheniformis ATCC 14580] gi|52786158|ref|YP_091987.1| Hbs [Bacillus licheniformis ATCC 14580] gi|319645255|ref|ZP_07999488.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] gi|52003999|gb|AAU23941.1| non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component [Bacillus licheniformis ATCC 14580] gi|52348660|gb|AAU41294.1| Hbs [Bacillus licheniformis ATCC 14580] gi|317393064|gb|EFV73858.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] Length = 92 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ GE I++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGEKIQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALK 86 >gi|304437105|ref|ZP_07397068.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370056|gb|EFM23718.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 100 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 53/87 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +LV +++++ L++KD+ + V LF I + G+ I++ F TF VK + +R Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKIQLIGFGTFEVKDRAARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E++I R VFKA LK Sbjct: 70 GRNPQTGKEIEIAASRNPVFKAGKALK 96 >gi|300722785|ref|YP_003712076.1| integration host factor (IHF) subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297629293|emb|CBJ89892.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Xenorhabdus nematophila ATCC 19061] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRV 91 >gi|229168463|ref|ZP_04296186.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228614869|gb|EEK71971.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 93 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 58/91 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T + T+ I +S GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92 >gi|116492840|ref|YP_804575.1| nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745] gi|116102990|gb|ABJ68133.1| bacterial nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745] Length = 91 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 53/84 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++K GL++KD+T V +F+ I D +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVDNVAKVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FK LK Sbjct: 64 PQTGKEIEIAASKVPAFKPGKALK 87 >gi|288555641|ref|YP_003427576.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus pseudofirmus OF4] gi|288546801|gb|ADC50684.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus pseudofirmus OF4] Length = 90 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S+S++ LS+KD+++ V +F+ I ++ V G +++ F +F V+++ +R G Sbjct: 1 MNKTDLINSVSEQADLSKKDASKAVDAVFDSITNALVEGGKVQLVGFGSFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT QE++I + FK LK + Sbjct: 61 RNPQTGQEIEIPATKNPAFKPGKQLKDAV 89 >gi|194334586|ref|YP_002016446.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] gi|194312404|gb|ACF46799.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] Length = 103 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 57/98 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT T++DLV +IS GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MSKTTTKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ RN +T ++V ++ + V FK S K + ++ Sbjct: 61 ERLARNPRTGEKVSVEAKNVPTFKISKEFKHAVSQSLQ 98 >gi|296131726|ref|YP_003638973.1| histone family protein DNA-binding protein [Thermincola sp. JR] gi|296030304|gb|ADG81072.1| histone family protein DNA-binding protein [Thermincola potens JR] Length = 90 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV S++++ GL++KD+ + V+ +F I ++ +G+ +++ F TF V+++ +R G Sbjct: 1 MNKQDLVSSVAEKAGLTKKDADKAVSAVFASIEEALAKGDKVQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGAVIEIAAAKVPAFKAGKALKDAV 89 >gi|118478949|ref|YP_896100.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228902230|ref|ZP_04066390.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|228909551|ref|ZP_04073374.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228916359|ref|ZP_04079928.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935026|ref|ZP_04097856.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228940802|ref|ZP_04103362.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228947391|ref|ZP_04109682.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954004|ref|ZP_04116033.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959936|ref|ZP_04121601.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966650|ref|ZP_04127696.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228973722|ref|ZP_04134300.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980278|ref|ZP_04140589.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228986865|ref|ZP_04146992.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229031353|ref|ZP_04187356.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|229047408|ref|ZP_04193002.1| DNA-binding protein HU [Bacillus cereus AH676] gi|229071224|ref|ZP_04204448.1| DNA-binding protein HU [Bacillus cereus F65185] gi|229080981|ref|ZP_04213494.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|229092762|ref|ZP_04223900.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|229111199|ref|ZP_04240753.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|229123244|ref|ZP_04252448.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|229129004|ref|ZP_04257977.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|229140371|ref|ZP_04268926.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|229146298|ref|ZP_04274670.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|229151928|ref|ZP_04280124.1| DNA-binding protein HU [Bacillus cereus m1550] gi|229180004|ref|ZP_04307348.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|229185956|ref|ZP_04313127.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|229191850|ref|ZP_04318821.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|229197835|ref|ZP_04324551.1| DNA-binding protein HU [Bacillus cereus m1293] gi|118418174|gb|ABK86593.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228585553|gb|EEK43655.1| DNA-binding protein HU [Bacillus cereus m1293] gi|228591612|gb|EEK49460.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228597508|gb|EEK55157.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|228603213|gb|EEK60690.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|228631483|gb|EEK88116.1| DNA-binding protein HU [Bacillus cereus m1550] gi|228637172|gb|EEK93630.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|228642932|gb|EEK99208.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|228654241|gb|EEL10106.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|228660020|gb|EEL15656.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|228672193|gb|EEL27483.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|228690560|gb|EEL44341.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|228702295|gb|EEL54768.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228711845|gb|EEL63796.1| DNA-binding protein HU [Bacillus cereus F65185] gi|228723937|gb|EEL75288.1| DNA-binding protein HU [Bacillus cereus AH676] gi|228729963|gb|EEL80940.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|228772814|gb|EEM21253.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228779383|gb|EEM27639.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228785968|gb|EEM33969.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793026|gb|EEM40582.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228799679|gb|EEM46631.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805570|gb|EEM52160.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228812244|gb|EEM58574.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228818816|gb|EEM64881.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228824596|gb|EEM70398.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843269|gb|EEM88348.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849840|gb|EEM94671.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228857345|gb|EEN01845.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 93 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 58/91 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92 >gi|110834697|ref|YP_693556.1| integration host factor subunit alpha [Alcanivorax borkumensis SK2] gi|123345421|sp|Q0VNG4|IHFA_ALCBS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|110647808|emb|CAL17284.1| Bacterial nucleoid DNA-binding protein [Alcanivorax borkumensis SK2] Length = 100 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F EI S +K+S F F ++ K R Sbjct: 3 ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLEDNIPVKLSGFGNFDLRDKSERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK+R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRV 92 >gi|300691321|ref|YP_003752316.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum PSI07] gi|299078381|emb|CBJ51031.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum PSI07] Length = 135 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V FN I ++ +G+++K+S F F ++ K R Sbjct: 34 TLTKAELAEMLFEQVGLNKRESKDMVEAFFNVIREALEQGDSVKLSGFGNFQLRDKPQRP 93 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK + Sbjct: 94 GRNPKTGEIIPITARRVVTFHASQKLKALV 123 >gi|319762546|ref|YP_004126483.1| integration host factor, beta subunit [Alicycliphilus denitrificans BC] gi|330824563|ref|YP_004387866.1| integration host factor subunit beta [Alicycliphilus denitrificans K601] gi|317117107|gb|ADU99595.1| integration host factor, beta subunit [Alicycliphilus denitrificans BC] gi|329309935|gb|AEB84350.1| integration host factor, beta subunit [Alicycliphilus denitrificans K601] Length = 100 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I+I F +F V + R+ Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVSHRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV 90 >gi|330009679|ref|ZP_08306553.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3] gi|328534767|gb|EGF61323.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3] Length = 94 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|31789462|gb|AAP58576.1| putative DNA-binding protein [uncultured Acidobacteria bacterium] Length = 116 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ +++ L++KD+ R V +F I ++ +GE I++ F +F V+++G+R G Sbjct: 1 MTKAELVEDVAEAAELTKKDAERLVEIVFESIIETLNQGEKIELRGFGSFRVRERGARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V I +RV FK LK+ I Sbjct: 61 RNPKTGDPVSIPAKRVPYFKPGKELKELI 89 >gi|400046|sp|P23302|IHFA_SERMA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Length = 99 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|51246635|ref|YP_066519.1| integration host factor, alpha-subunit [Desulfotalea psychrophila LSv54] gi|50877672|emb|CAG37512.1| probable integration host factor, alpha-subunit [Desulfotalea psychrophila LSv54] Length = 94 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T++DL++ + K+ GL++ +T V D+ + G + +S F F+VK K SR Sbjct: 2 TLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E+ ++ RRVV FK S IL+ +I Sbjct: 62 RGRNPQTGDELTLEARRVVTFKPSGILRDKI 92 >gi|21231892|ref|NP_637809.1| integration host factor subunit alpha [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21243319|ref|NP_642901.1| integration host factor subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|58582804|ref|YP_201820.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzae KACC10331] gi|66767980|ref|YP_242742.1| integration host factor subunit alpha [Xanthomonas campestris pv. campestris str. 8004] gi|78048345|ref|YP_364520.1| integration host factor subunit alpha [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84624678|ref|YP_452050.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711594|ref|ZP_02242801.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzicola BLS256] gi|188991106|ref|YP_001903116.1| integration host factor subunit alpha [Xanthomonas campestris pv. campestris str. B100] gi|289661755|ref|ZP_06483336.1| integration host factor subunit alpha [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668707|ref|ZP_06489782.1| integration host factor subunit alpha [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325919872|ref|ZP_08181862.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325927163|ref|ZP_08188426.1| integration host factor, alpha subunit [Xanthomonas perforans 91-118] gi|59799768|sp|P0A0T9|IHFA_XANCP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|59799769|sp|P0A0U0|IHFA_XANAC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|75508131|sp|Q5GXY6|IHFA_XANOR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81306043|sp|Q4UW51|IHFA_XANC8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123730273|sp|Q3BRU3|IHFA_XANC5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123739069|sp|Q2P101|IHFA_XANOM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709759|sp|B0RRH5|IHFA_XANCB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1172091|gb|AAA86369.1| GumA [Xanthomonas campestris] gi|21108861|gb|AAM37437.1| integration host factor alpha subunit [Xanthomonas axonopodis pv. citri str. 306] gi|21113616|gb|AAM41733.1| integration host factor alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58427398|gb|AAW76435.1| integration host factor alpha subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|66573312|gb|AAY48722.1| integration host factor alpha chain [Xanthomonas campestris pv. campestris str. 8004] gi|78036775|emb|CAJ24468.1| Integration host factor alpha subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84368618|dbj|BAE69776.1| Integration host factor alpha-subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|167732866|emb|CAP51060.1| integration host factor alpha chain [Xanthomonas campestris pv. campestris] gi|325542476|gb|EGD13955.1| integration host factor, alpha subunit [Xanthomonas perforans 91-118] gi|325549656|gb|EGD20520.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC 19865] Length = 99 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + D+ +G +K+S F F +++K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91 >gi|158521048|ref|YP_001528918.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158509874|gb|ABW66841.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 94 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+S ++ S+ +E GL RK V L I ++ GE + +S F F VK+K +R Sbjct: 2 TLTKSRIIDSVQEETGLPRKRCDELVEELLEIIKETLANGENLMVSGFGKFCVKEKKARK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T ++ +D R+VV FK S L+++I Sbjct: 62 GRNPATGDDLMLDERKVVTFKCSQGLREKI 91 >gi|255021995|ref|ZP_05294002.1| integration host factor, alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254968563|gb|EET26118.1| integration host factor, alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 101 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ DL + G + ++ V F+ I ++ RGE +K+S F F ++ K +R Sbjct: 2 TVTKLDLTNHLYDTIGFKKAEAAELVDLFFDTIRETLARGEEVKLSGFGNFTLRDKRARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + V+I RRVV F AS +LK Sbjct: 62 GRNPRTRELVEISARRVVTFHASPVLK 88 >gi|152831|gb|AAA26558.1| integration host factor alpha-subunit [Serratia marcescens] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|78045062|ref|YP_359077.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901] gi|77997177|gb|ABB16076.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901] Length = 89 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ +++KD+ + + + I ++ +GE +++ F TF V+++ +R G Sbjct: 1 MNKAELVSVIAEKAEMTKKDAEKALNAVLAAIEEALKKGEKVQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT QE++I +V VFK +LK++I Sbjct: 61 RNPQTGQEIEIPASKVPVFKPGKLLKEKI 89 >gi|251792548|ref|YP_003007274.1| integration host factor subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533941|gb|ACS97187.1| integration host factor, alpha subunit [Aggregatibacter aphrophilus NJ8700] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F LS++++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRSRV 91 >gi|153875700|ref|ZP_02003384.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS] gi|152067837|gb|EDN66617.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 55/93 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ + + + E GL+++++ V F E+ + +GE++K+S F F ++ K R Sbjct: 2 ALTKAAMAEKLFDEVGLNKREAKDMVDRFFEEVRAALEKGESVKLSGFGNFDLRDKKQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T QE+ I RRVV F+ L+ R+ ++ Sbjct: 62 GRNPKTGQEIPISARRVVTFRPGQKLRARVEEN 94 >gi|157370390|ref|YP_001478379.1| integration host factor subunit alpha [Serratia proteamaculans 568] gi|270261563|ref|ZP_06189836.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13] gi|293396364|ref|ZP_06640642.1| integration host factor subunit alpha [Serratia odorifera DSM 4582] gi|166918522|sp|A8GDR1|IHFA_SERP5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157322154|gb|ABV41251.1| integration host factor, alpha subunit [Serratia proteamaculans 568] gi|270045047|gb|EFA18138.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13] gi|291421153|gb|EFE94404.1| integration host factor subunit alpha [Serratia odorifera DSM 4582] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|104781112|ref|YP_607610.1| integration host factor subunit alpha [Pseudomonas entomophila L48] gi|123079215|sp|Q1IC09|IHFA_PSEE4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|95110099|emb|CAK14804.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Pseudomonas entomophila L48] Length = 100 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|153833703|ref|ZP_01986370.1| integration host factor, alpha subunit [Vibrio harveyi HY01] gi|156974397|ref|YP_001445304.1| integration host factor subunit alpha [Vibrio harveyi ATCC BAA-1116] gi|269962174|ref|ZP_06176527.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3] gi|166918532|sp|A7MVH4|IHFA_VIBHB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148869982|gb|EDL68942.1| integration host factor, alpha subunit [Vibrio harveyi HY01] gi|156525991|gb|ABU71077.1| hypothetical protein VIBHAR_02112 [Vibrio harveyi ATCC BAA-1116] gi|269833005|gb|EEZ87111.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|238753681|ref|ZP_04615043.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC 29473] gi|238708233|gb|EEQ00589.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC 29473] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|238783379|ref|ZP_04627402.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC 43970] gi|238791696|ref|ZP_04635333.1| Integration host factor subunit alpha [Yersinia intermedia ATCC 29909] gi|238797375|ref|ZP_04640875.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC 43969] gi|238715624|gb|EEQ07613.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC 43970] gi|238718806|gb|EEQ10622.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC 43969] gi|238728800|gb|EEQ20317.1| Integration host factor subunit alpha [Yersinia intermedia ATCC 29909] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|148543996|ref|YP_001271366.1| nucleoid protein Hbs [Lactobacillus reuteri DSM 20016] gi|184153390|ref|YP_001841731.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112] gi|194467924|ref|ZP_03073910.1| histone family protein DNA-binding protein [Lactobacillus reuteri 100-23] gi|227364909|ref|ZP_03848954.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3] gi|227543423|ref|ZP_03973472.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A] gi|300910089|ref|ZP_07127549.1| DNA-binding protein HU [Lactobacillus reuteri SD2112] gi|325682466|ref|ZP_08161983.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A] gi|133930435|gb|ABO43789.1| DNA-binding protein [Lactobacillus reuteri] gi|148531030|gb|ABQ83029.1| bacterial nucleoid protein Hbs [Lactobacillus reuteri DSM 20016] gi|183224734|dbj|BAG25251.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112] gi|194452777|gb|EDX41675.1| histone family protein DNA-binding protein [Lactobacillus reuteri 100-23] gi|227070056|gb|EEI08434.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3] gi|227186602|gb|EEI66673.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A] gi|300892737|gb|EFK86097.1| DNA-binding protein HU [Lactobacillus reuteri SD2112] gi|324978305|gb|EGC15255.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A] Length = 91 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GRN Sbjct: 4 KAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FK LK Sbjct: 64 PQTGEEINIPASKVPAFKPGKALK 87 >gi|218667321|ref|YP_002425542.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519534|gb|ACK80120.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 91 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ DL + +S GL+ K+ V +F+ I + GE +K+S F F + +K +R Sbjct: 2 TITKLDLTRHLSDTMGLTAKECAALVNAMFDTIRATLASGEDVKLSGFGNFILHEKRARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN + + +I RRVV F+AS ++++R Sbjct: 62 GRNPKNGEPFEIKARRVVTFRASQLVRER 90 >gi|56420750|ref|YP_148068.1| DNA-binding protein HU [Geobacillus kaustophilus HTA426] gi|138895793|ref|YP_001126246.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2] gi|196248675|ref|ZP_03147375.1| histone family protein DNA-binding protein [Geobacillus sp. G11MC16] gi|261417947|ref|YP_003251629.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC61] gi|297529615|ref|YP_003670890.1| histone family protein DNA-binding protein [Geobacillus sp. C56-T3] gi|319767241|ref|YP_004132742.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC52] gi|61222554|sp|P0A3H0|DBH_BACST RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|61222555|sp|P0A3H1|DBH_BACCL RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|61222556|sp|P0A3H2|DBH_BACCA RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|1311345|pdb|1HUE|A Chain A, Histone-Like Protein gi|1311346|pdb|1HUE|B Chain B, Histone-Like Protein gi|4389195|pdb|1HUU|A Chain A, Dna-Binding Protein Hu From Bacillus Stearothermophilus gi|4389196|pdb|1HUU|B Chain B, Dna-Binding Protein Hu From Bacillus Stearothermophilus gi|4389197|pdb|1HUU|C Chain C, Dna-Binding Protein Hu From Bacillus Stearothermophilus gi|143065|gb|AAA22532.1| hubst [Geobacillus stearothermophilus] gi|143067|gb|AAA22533.1| hubcalx [Bacillus caldotenax] gi|143069|gb|AAA22534.1| hubcald [Bacillus caldolyticus] gi|1065992|dbj|BAA07273.1| DNA binding protein HU [Geobacillus stearothermophilus] gi|56380592|dbj|BAD76500.1| DNA-binding protein HU (DNA-binding protein II) [Geobacillus kaustophilus HTA426] gi|134267306|gb|ABO67501.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2] gi|196211551|gb|EDY06310.1| histone family protein DNA-binding protein [Geobacillus sp. G11MC16] gi|261374404|gb|ACX77147.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC61] gi|297252867|gb|ADI26313.1| histone family protein DNA-binding protein [Geobacillus sp. C56-T3] gi|317112107|gb|ADU94599.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC52] Length = 90 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 56/86 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALK 86 >gi|28898068|ref|NP_797673.1| integration host factor subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|153839847|ref|ZP_01992514.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|260366369|ref|ZP_05778808.1| integration host factor, alpha subunit [Vibrio parahaemolyticus K5030] gi|260878417|ref|ZP_05890772.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260896996|ref|ZP_05905492.1| integration host factor, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901794|ref|ZP_05910189.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|33301264|sp|Q87Q56|IHFA_VIBPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|28806282|dbj|BAC59557.1| integration host factor, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746630|gb|EDM57618.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|308087674|gb|EFO37369.1| integration host factor, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308091287|gb|EFO40982.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108021|gb|EFO45561.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308113197|gb|EFO50737.1| integration host factor, alpha subunit [Vibrio parahaemolyticus K5030] gi|328472975|gb|EGF43823.1| integration host factor subunit alpha [Vibrio parahaemolyticus 10329] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|329666305|pdb|3RHI|A Chain A, Dna-Binding Protein Hu From Bacillus Anthracis gi|329666306|pdb|3RHI|B Chain B, Dna-Binding Protein Hu From Bacillus Anthracis gi|329666307|pdb|3RHI|C Chain C, Dna-Binding Protein Hu From Bacillus Anthracis gi|329666308|pdb|3RHI|D Chain D, Dna-Binding Protein Hu From Bacillus Anthracis Length = 93 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 58/92 (63%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ + Sbjct: 1 SNAMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN QT +E++I +V FKA LK+ + Sbjct: 61 RTGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92 >gi|146307010|ref|YP_001187475.1| integration host factor subunit alpha [Pseudomonas mendocina ymp] gi|166918516|sp|A4XTS7|IHFA_PSEMY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|145575211|gb|ABP84743.1| integration host factor, alpha subunit [Pseudomonas mendocina ymp] Length = 100 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|332141057|ref|YP_004426795.1| integration host factor subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] gi|226707368|sp|B4RS41|IHFA_ALTMD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|327551079|gb|AEA97797.1| integration host factor subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] Length = 99 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91 >gi|37526554|ref|NP_929898.1| integration host factor subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|253989352|ref|YP_003040708.1| integration host factor subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|81707667|sp|Q7N3Q2|IHFA_PHOLL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|36785985|emb|CAE15037.1| integration host factor alpha chain (IHF-alpha) [Photorhabdus luminescens subsp. laumondii TTO1] gi|253780802|emb|CAQ83964.1| integration host factor subunit alpha (ihf-alpha) [Photorhabdus asymbiotica] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|85059402|ref|YP_455104.1| integration host factor subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|123725404|sp|Q2NT26|IHFA_SODGM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|84779922|dbj|BAE74699.1| integration host factor alpha subunit [Sodalis glossinidius str. 'morsitans'] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKEIVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|81428626|ref|YP_395626.1| histone-like DNA-binding protein HU [Lactobacillus sakei subsp. sakei 23K] gi|78610268|emb|CAI55317.1| Histone-like DNA-binding protein HU [Lactobacillus sakei subsp. sakei 23K] Length = 91 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 53/84 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L+++++ + GL++KD+T V +F I D+ +G+ +++ F TF V+++ +R GRN Sbjct: 4 KAQLIENVASKTGLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGTFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+KI +V FK LK Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALK 87 >gi|22125804|ref|NP_669227.1| integration host factor subunit alpha [Yersinia pestis KIM 10] gi|45442004|ref|NP_993543.1| integration host factor subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|51596659|ref|YP_070850.1| integration host factor subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|108807766|ref|YP_651682.1| integration host factor subunit alpha [Yersinia pestis Antiqua] gi|108812043|ref|YP_647810.1| integration host factor subunit alpha [Yersinia pestis Nepal516] gi|123442195|ref|YP_001006176.1| integration host factor subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145598026|ref|YP_001162102.1| integration host factor subunit alpha [Yersinia pestis Pestoides F] gi|149365665|ref|ZP_01887700.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125] gi|153948307|ref|YP_001400695.1| integration host factor subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|162420689|ref|YP_001607026.1| integration host factor subunit alpha [Yersinia pestis Angola] gi|165927499|ref|ZP_02223331.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939484|ref|ZP_02228030.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011822|ref|ZP_02232720.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211124|ref|ZP_02237159.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400951|ref|ZP_02306457.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422126|ref|ZP_02313879.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424960|ref|ZP_02316713.1| integration host factor, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024065|ref|YP_001720570.1| integration host factor subunit alpha [Yersinia pseudotuberculosis YPIII] gi|186895716|ref|YP_001872828.1| integration host factor subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|218929515|ref|YP_002347390.1| integration host factor subunit alpha [Yersinia pestis CO92] gi|229837952|ref|ZP_04458111.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895112|ref|ZP_04510288.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Pestoides A] gi|229898513|ref|ZP_04513658.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229902354|ref|ZP_04517474.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Nepal516] gi|238749476|ref|ZP_04610981.1| Integration host factor subunit alpha [Yersinia rohdei ATCC 43380] gi|238765301|ref|ZP_04626228.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC 33638] gi|238787094|ref|ZP_04630894.1| Integration host factor subunit alpha [Yersinia frederiksenii ATCC 33641] gi|270490464|ref|ZP_06207538.1| integration host factor, alpha subunit [Yersinia pestis KIM D27] gi|332161617|ref|YP_004298194.1| integration host factor subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|21362607|sp|Q8ZDX2|IHFA_YERPE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|55977891|sp|Q9X9F6|IHFA_YERPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|122979583|sp|Q1C735|IHFA_YERPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123373196|sp|Q1CIH0|IHFA_YERPN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918533|sp|A1JMM4|IHFA_YERE8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918534|sp|A7FHG7|IHFA_YERP3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918535|sp|A4TIL7|IHFA_YERPP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709763|sp|B2K662|IHFA_YERPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709764|sp|A9R0A2|IHFA_YERPG RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709765|sp|B1JJ23|IHFA_YERPY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|21958730|gb|AAM85478.1|AE013793_14 integration host factor (IHF), alpha subunit [Yersinia pestis KIM 10] gi|45436867|gb|AAS62420.1| integration host factor alpha-subunit [Yersinia pestis biovar Microtus str. 91001] gi|51589941|emb|CAH21573.1| integration host factor alpha-subunit [Yersinia pseudotuberculosis IP 32953] gi|108775691|gb|ABG18210.1| integration host factor alpha-subunit [Yersinia pestis Nepal516] gi|108779679|gb|ABG13737.1| integration host factor alpha-subunit [Yersinia pestis Antiqua] gi|115348126|emb|CAL21054.1| integration host factor alpha-subunit [Yersinia pestis CO92] gi|122089156|emb|CAL11998.1| integration host factor alpha-subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145209722|gb|ABP39129.1| integration host factor alpha-subunit [Yersinia pestis Pestoides F] gi|149292078|gb|EDM42152.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125] gi|152959802|gb|ABS47263.1| integration host factor, alpha subunit [Yersinia pseudotuberculosis IP 31758] gi|162353504|gb|ABX87452.1| integration host factor, alpha subunit [Yersinia pestis Angola] gi|165912533|gb|EDR31164.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920554|gb|EDR37831.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989287|gb|EDR41588.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166208304|gb|EDR52784.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958938|gb|EDR55959.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049804|gb|EDR61212.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056147|gb|EDR65925.1| integration host factor, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750599|gb|ACA68117.1| integration host factor, alpha subunit [Yersinia pseudotuberculosis YPIII] gi|186698742|gb|ACC89371.1| integration host factor, alpha subunit [Yersinia pseudotuberculosis PB1/+] gi|229680689|gb|EEO76785.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Nepal516] gi|229688061|gb|EEO80132.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229694318|gb|EEO84365.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701874|gb|EEO89897.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Pestoides A] gi|238696474|gb|EEP89264.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC 33638] gi|238712131|gb|EEQ04344.1| Integration host factor subunit alpha [Yersinia rohdei ATCC 43380] gi|238724882|gb|EEQ16522.1| Integration host factor subunit alpha [Yersinia frederiksenii ATCC 33641] gi|270338968|gb|EFA49745.1| integration host factor, alpha subunit [Yersinia pestis KIM D27] gi|318605892|emb|CBY27390.1| integration host factor alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|320015082|gb|ADV98653.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325665847|gb|ADZ42491.1| integration host factor subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|317491936|ref|ZP_07950370.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|322833533|ref|YP_004213560.1| integration host factor, subunit alpha [Rahnella sp. Y9602] gi|316920057|gb|EFV41382.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|321168734|gb|ADW74433.1| integration host factor, alpha subunit [Rahnella sp. Y9602] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVEIFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|126735022|ref|ZP_01750768.1| integration host factor, beta subunit [Roseobacter sp. CCS2] gi|126715577|gb|EBA12442.1| integration host factor, beta subunit [Roseobacter sp. CCS2] Length = 93 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++ E L ++D R V T+F EI ++ RG+ +++ F F VK++ R+ Sbjct: 1 MIRSELIQKLADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDQRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++D + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRL 90 >gi|28869581|ref|NP_792200.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|66045408|ref|YP_235249.1| integration host factor subunit alpha [Pseudomonas syringae pv. syringae B728a] gi|70729487|ref|YP_259225.1| integration host factor subunit alpha [Pseudomonas fluorescens Pf-5] gi|71737728|ref|YP_274360.1| integration host factor subunit alpha [Pseudomonas syringae pv. phaseolicola 1448A] gi|77458164|ref|YP_347669.1| integration host factor subunit alpha [Pseudomonas fluorescens Pf0-1] gi|213970489|ref|ZP_03398616.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato T1] gi|229591573|ref|YP_002873692.1| integration host factor subunit alpha [Pseudomonas fluorescens SBW25] gi|237801009|ref|ZP_04589470.1| integration host factor subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|257486166|ref|ZP_05640207.1| integration host factor subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623630|ref|ZP_06456584.1| integration host factor subunit alpha [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647152|ref|ZP_06478495.1| integration host factor subunit alpha [Pseudomonas syringae pv. aesculi str. 2250] gi|289673310|ref|ZP_06494200.1| integration host factor subunit alpha [Pseudomonas syringae pv. syringae FF5] gi|298486707|ref|ZP_07004764.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385321|ref|ZP_07233739.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato Max13] gi|302062680|ref|ZP_07254221.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato K40] gi|302132637|ref|ZP_07258627.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187619|ref|ZP_07264292.1| integration host factor subunit alpha [Pseudomonas syringae pv. syringae 642] gi|312961937|ref|ZP_07776434.1| integration host factor, alpha subunit [Pseudomonas fluorescens WH6] gi|38372323|sp|Q883H6|IHFA_PSESM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81308305|sp|Q4ZUG1|IHFA_PSEU2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123605197|sp|Q3KEX6|IHFA_PSEPF RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123747651|sp|Q48JR7|IHFA_PSE14 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123748498|sp|Q4KEV8|IHFA_PSEF5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|259491533|sp|C3JZN1|IHFA_PSEFS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|28852823|gb|AAO55895.1| integration host factor, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|63256115|gb|AAY37211.1| Integration host factor, alpha subunit [Pseudomonas syringae pv. syringae B728a] gi|68343786|gb|AAY91392.1| integration host factor, alpha subunit [Pseudomonas fluorescens Pf-5] gi|71558281|gb|AAZ37492.1| integration host factor, alpha subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|77382167|gb|ABA73680.1| integration host factor alpha-subunit [Pseudomonas fluorescens Pf0-1] gi|213924660|gb|EEB58228.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato T1] gi|229363439|emb|CAY50633.1| integration host factor alpha-subunit [Pseudomonas fluorescens SBW25] gi|298158790|gb|EFH99853.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|311283747|gb|EFQ62331.1| integration host factor, alpha subunit [Pseudomonas fluorescens WH6] gi|320324308|gb|EFW80387.1| integration host factor subunit alpha [Pseudomonas syringae pv. glycinea str. B076] gi|320328570|gb|EFW84572.1| integration host factor subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330867701|gb|EGH02410.1| integration host factor subunit alpha [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876795|gb|EGH10944.1| integration host factor subunit alpha [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330885570|gb|EGH19719.1| integration host factor subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330888323|gb|EGH20984.1| integration host factor subunit alpha [Pseudomonas syringae pv. mori str. 301020] gi|330898072|gb|EGH29491.1| integration host factor subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943383|gb|EGH45746.1| integration host factor subunit alpha [Pseudomonas syringae pv. pisi str. 1704B] gi|330951872|gb|EGH52132.1| integration host factor subunit alpha [Pseudomonas syringae Cit 7] gi|330958893|gb|EGH59153.1| integration host factor subunit alpha [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967292|gb|EGH67552.1| integration host factor subunit alpha [Pseudomonas syringae pv. actinidiae str. M302091] gi|330973946|gb|EGH74012.1| integration host factor subunit alpha [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977715|gb|EGH77618.1| integration host factor subunit alpha [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330989235|gb|EGH87338.1| integration host factor subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010496|gb|EGH90552.1| integration host factor subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331016133|gb|EGH96189.1| integration host factor subunit alpha [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331023866|gb|EGI03923.1| integration host factor subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 100 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV 92 >gi|332993560|gb|AEF03615.1| integration host factor subunit alpha [Alteromonas sp. SN2] Length = 99 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALEAGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91 >gi|325917703|ref|ZP_08179894.1| integration host factor, alpha subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536097|gb|EGD07902.1| integration host factor, alpha subunit [Xanthomonas vesicatoria ATCC 35937] Length = 99 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + D+ +G +K+S F F ++ K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRPKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91 >gi|238757777|ref|ZP_04618960.1| Integration host factor subunit alpha [Yersinia aldovae ATCC 35236] gi|238704020|gb|EEP96554.1| Integration host factor subunit alpha [Yersinia aldovae ATCC 35236] Length = 98 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|114332285|ref|YP_748507.1| integration host factor subunit alpha [Nitrosomonas eutropha C91] gi|122313054|sp|Q0ADP0|IHFA_NITEC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114309299|gb|ABI60542.1| integration host factor, alpha subunit [Nitrosomonas eutropha C91] Length = 102 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 54/96 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + GL+++++ V + E+ + G+ +K+S F F ++ K R Sbjct: 2 ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRTALQNGDGVKLSGFGNFQLRTKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F AS LK + + RG Sbjct: 62 GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRG 97 >gi|21673134|ref|NP_661199.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS] gi|21646210|gb|AAM71541.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS] Length = 101 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 58/101 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T T++DLV I++ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGQTTTKADLVNVIAQRTGLTKNETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R RN +T ++V ++P+ V FK S K + + ++ K Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLKANK 101 >gi|56963393|ref|YP_175124.1| DNA-binding protein HU [Bacillus clausii KSM-K16] gi|56909636|dbj|BAD64163.1| DNA-binding protein HU [Bacillus clausii KSM-K16] Length = 91 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 56/86 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++S++ +S+KD+++ V +FN I +S V+G +++ F +F V+++ +R G Sbjct: 1 MNKTDLINAVSEQAEISKKDASKAVDAVFNGITESLVKGAKVQLVGFGSFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + FK LK Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLK 86 >gi|315634292|ref|ZP_07889579.1| integration host factor subunit alpha [Aggregatibacter segnis ATCC 33393] gi|315476882|gb|EFU67627.1| integration host factor subunit alpha [Aggregatibacter segnis ATCC 33393] Length = 98 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F LS++++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRIALETGNDVKLSGFGNFELRDKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRV 91 >gi|91223955|ref|ZP_01259219.1| integration host factor alpha subunit [Vibrio alginolyticus 12G01] gi|262394474|ref|YP_003286328.1| integration host factor subunit alpha [Vibrio sp. Ex25] gi|269966318|ref|ZP_06180405.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B] gi|91191447|gb|EAS77712.1| integration host factor alpha subunit [Vibrio alginolyticus 12G01] gi|262338068|gb|ACY51863.1| integration host factor alpha subunit [Vibrio sp. Ex25] gi|269829057|gb|EEZ83304.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B] Length = 98 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|254481702|ref|ZP_05094945.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2148] gi|214037831|gb|EEB78495.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2148] Length = 102 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S++ + + +E GL+++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRACLENNEQVKLSGFGNFDLRDKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F+ LK R+ + Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94 >gi|134104523|pdb|2IIF|A Chain A, Single Chain Integration Host Factor Mutant Protein (Scihf2- K45ae) In Complex With Dna Length = 204 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 56/101 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++++ + + + GLS++D+ V F EI + GE +++S F F ++ K Sbjct: 44 SGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVELSGFGNFDLRDKNQ 103 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 R GRN +T +++ I RRVV F+ LK R+ + G + Sbjct: 104 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144 >gi|30248955|ref|NP_841025.1| integration host factor subunit alpha [Nitrosomonas europaea ATCC 19718] gi|81722208|sp|Q82VV7|IHFA_NITEU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|30138572|emb|CAD84863.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] Length = 102 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 54/96 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + GL+++++ V + E+ + G+ +K+S F F ++ K R Sbjct: 2 ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRAALQNGDGVKLSGFGNFQLRTKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F AS LK + + RG Sbjct: 62 GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRG 97 >gi|239996231|ref|ZP_04716755.1| integration host factor subunit alpha [Alteromonas macleodii ATCC 27126] Length = 99 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRV 91 >gi|183598822|ref|ZP_02960315.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC 25827] gi|188021030|gb|EDU59070.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC 25827] Length = 98 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V + F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGVSKRDAKDLVESFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|301059179|ref|ZP_07200119.1| integration host factor subunit alpha [delta proteobacterium NaphS2] gi|300446727|gb|EFK10552.1| integration host factor subunit alpha [delta proteobacterium NaphS2] Length = 94 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ SI + GLS+ S L I ++ GE + IS F F VK+K SR Sbjct: 2 ALTKEKIIDSIYHQVGLSKSQSRAAAEGLLEIIKETLENGEDLLISGFGKFLVKEKASRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +++++ RRVVVFK S +L+ +I Sbjct: 62 GRNPQTTEDLQLRARRVVVFKTSGVLRDKI 91 >gi|118595083|ref|ZP_01552430.1| integration host factor subunit alpha [Methylophilales bacterium HTCC2181] gi|118440861|gb|EAV47488.1| integration host factor subunit alpha [Methylophilales bacterium HTCC2181] Length = 100 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 57/99 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + + GL++ ++ V F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELSEILFDQVGLNKSEAKEMVEAFFEEIRSALENGDSVKLSGFGNFDLRTKAERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +E+ I RRVV F +S LK + + G++ Sbjct: 62 GRNPKTGEEIPIKARRVVTFHSSQKLKTSVEEKTAGKQT 100 >gi|326202457|ref|ZP_08192326.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] gi|325987575|gb|EGD48402.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] Length = 91 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++++ GLS+KDS + + + + ++ G+ +++ F +F VKQ+ +R G Sbjct: 1 MNKSELVDKMAEKSGLSKKDSDKALNAMLESVEEALTSGDKVQLIGFGSFEVKQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + VFKA LK+ I Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMI 89 >gi|116747454|ref|YP_844141.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116696518|gb|ABK15706.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 95 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ +V+++ + ++ +S + + TLF + + GE + IS F F VK+K R Sbjct: 2 TLTKAHIVENLFAKNIFTKTESAQIIETLFEIVKQTLEHGEDVLISGFGKFSVKEKNQRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + + PR+VV FK S +L++RI Sbjct: 62 GRNPQTGDPIMLSPRKVVTFKCSGVLRERI 91 >gi|261821457|ref|YP_003259563.1| integration host factor subunit alpha [Pectobacterium wasabiae WPP163] gi|261605470|gb|ACX87956.1| integration host factor, alpha subunit [Pectobacterium wasabiae WPP163] Length = 98 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|319776256|ref|YP_004138744.1| integration host factor (IHF), DNA-binding protein subunit alpha [Haemophilus influenzae F3047] gi|329123395|ref|ZP_08251959.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC 11116] gi|317450847|emb|CBY87071.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus influenzae F3047] gi|327470977|gb|EGF16432.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC 11116] Length = 96 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+V+ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKIDIVEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVAFKPGQKLRARV 92 >gi|52425144|ref|YP_088281.1| HimA protein [Mannheimia succiniciproducens MBEL55E] gi|81691393|sp|Q65TL4|IHFA_MANSM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|52307196|gb|AAU37696.1| HimA protein [Mannheimia succiniciproducens MBEL55E] Length = 98 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L ++ ++ GL++ ++ V F EI + +G +K+S F F +++K SR Sbjct: 2 TLTKVELADNLIEKHGLNKSEAKALVEDFFEEIRVALEKGNDVKLSGFGNFELREKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRARV 91 >gi|332686553|ref|YP_004456327.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311] gi|332370562|dbj|BAK21518.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311] Length = 91 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+ +++ GLS+KD+T V +F I +S +GE +++ F F V+++ +R GRN Sbjct: 4 KAELIDNVASTTGLSKKDATSAVDAVFATIQESLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I+ +V FK LK + Sbjct: 64 PQTGDEIQIEASKVPAFKPGKALKDAV 90 >gi|238919788|ref|YP_002933303.1| integration host factor subunit alpha [Edwardsiella ictaluri 93-146] gi|259491531|sp|C5B852|IHFA_EDWI9 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|238869357|gb|ACR69068.1| integration host factor, alpha subunit, putative [Edwardsiella ictaluri 93-146] Length = 98 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKCRV 91 >gi|224826508|ref|ZP_03699609.1| integration host factor, alpha subunit [Lutiella nitroferrum 2002] gi|224601109|gb|EEG07291.1| integration host factor, alpha subunit [Lutiella nitroferrum 2002] Length = 98 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 53/87 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + GL+++++ V + F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFDKVGLNKREAKDMVESFFEEIRQALESGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I RRVV F AS LK Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLK 88 >gi|121594811|ref|YP_986707.1| integration host factor subunit beta [Acidovorax sp. JS42] gi|222110590|ref|YP_002552854.1| integration host factor subunit beta [Acidovorax ebreus TPSY] gi|120606891|gb|ABM42631.1| integration host factor, beta subunit [Acidovorax sp. JS42] gi|221730034|gb|ACM32854.1| integration host factor, beta subunit [Acidovorax ebreus TPSY] Length = 103 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I+I F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVNRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALRETV 90 >gi|311030279|ref|ZP_07708369.1| DNA-binding protein HU [Bacillus sp. m3-13] Length = 90 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEASELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAV 89 >gi|120611942|ref|YP_971620.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|120590406|gb|ABM33846.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] Length = 109 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I++ F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV 90 >gi|124267071|ref|YP_001021075.1| integration host factor alpha-subunit [Methylibium petroleiphilum PM1] gi|124259846|gb|ABM94840.1| integration host factor alpha-subunit [Methylibium petroleiphilum PM1] Length = 113 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 54/96 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F I V G+ +K+S F F +++K Sbjct: 11 TPTLTKAELAELLFERLGLNKRESKDMVEAFFELIHGQLVEGQDVKLSGFGNFQIRRKAP 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R GRN +T + + I R VV F AS LK + D+ Sbjct: 71 RPGRNPRTGEAIPIKARNVVTFHASHKLKGVVQGDI 106 >gi|292669443|ref|ZP_06602869.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541] gi|292648896|gb|EFF66868.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541] Length = 111 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 54/87 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +LV +++++ GL++KD+ + V +F + + +G+ I++ F TF VK + +R Sbjct: 21 TLNKQELVANVAEQAGLTKKDAEKAVNAVFETVKGALSKGDKIQLIGFGTFEVKARKARK 80 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E+ I + VFKA LK Sbjct: 81 GRNPQTGKEINIPASKNPVFKAGKALK 107 >gi|114766575|ref|ZP_01445531.1| integration host factor beta subunit [Pelagibaca bermudensis HTCC2601] gi|114541191|gb|EAU44243.1| integration host factor beta subunit [Roseovarius sp. HTCC2601] Length = 93 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I++E L ++D R V T+F EI ++ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRL 90 >gi|88810671|ref|ZP_01125928.1| Integration host factor, alpha subunit [Nitrococcus mobilis Nb-231] gi|88792301|gb|EAR23411.1| Integration host factor, alpha subunit [Nitrococcus mobilis Nb-231] Length = 100 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ V + F EI + +G +K+S F F ++ K R Sbjct: 2 ALTKAEMAERLFDELGLNKREAKELVESFFEEIRCALEQGTPVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPICARRVVTFRPGQKLKARV 91 >gi|119356262|ref|YP_910906.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353611|gb|ABL64482.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 102 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGTTTTKADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V +DP+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98 >gi|329118112|ref|ZP_08246824.1| integration host factor subunit alpha [Neisseria bacilliformis ATCC BAA-1200] gi|327465772|gb|EGF12045.1| integration host factor subunit alpha [Neisseria bacilliformis ATCC BAA-1200] Length = 95 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 3/81 (3%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 LV +SK +S+ D+ V F EI + RGE IKIS F F ++ K R GRN +T Sbjct: 5 LVDKVSK---VSKNDAKEIVELFFEEIRTTLARGEEIKISGFGNFQLRDKPQRPGRNPKT 61 Query: 70 NQEVKIDPRRVVVFKASSILK 90 +EV I RRVV F AS LK Sbjct: 62 GEEVPITARRVVTFHASQKLK 82 >gi|163801038|ref|ZP_02194938.1| integration host factor alpha subunit [Vibrio sp. AND4] gi|159175387|gb|EDP60184.1| integration host factor alpha subunit [Vibrio sp. AND4] Length = 98 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEDLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARV 91 >gi|88859784|ref|ZP_01134424.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas tunicata D2] gi|88818801|gb|EAR28616.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas tunicata D2] Length = 99 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + + G+++KD+ V + F I + GE IK+S F F ++ K R Sbjct: 2 ALTKADIAEHLFVKLGINKKDAKELVESFFENIRAALESGEQIKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|260431167|ref|ZP_05785138.1| integration host factor, beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414995|gb|EEX08254.1| integration host factor, beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 94 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F EI D+ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEITDAMARGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRL 90 >gi|228900190|ref|ZP_04064422.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|228907242|ref|ZP_04071102.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228914185|ref|ZP_04077801.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926640|ref|ZP_04089709.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945209|ref|ZP_04107565.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228964584|ref|ZP_04125693.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228971603|ref|ZP_04132226.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228990624|ref|ZP_04150589.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228996722|ref|ZP_04156359.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|229004383|ref|ZP_04162146.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|229010917|ref|ZP_04168113.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|229016866|ref|ZP_04173794.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|229023072|ref|ZP_04179586.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|229058245|ref|ZP_04196633.1| DNA-binding protein HU [Bacillus cereus AH603] gi|229069162|ref|ZP_04202453.1| DNA-binding protein HU [Bacillus cereus F65185] gi|229084613|ref|ZP_04216882.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|229090571|ref|ZP_04221806.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|229121152|ref|ZP_04250389.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|229126923|ref|ZP_04255934.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|229132417|ref|ZP_04261271.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|229138303|ref|ZP_04266898.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|229155175|ref|ZP_04283287.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|229160560|ref|ZP_04288555.1| DNA-binding protein HU [Bacillus cereus R309803] gi|229172247|ref|ZP_04299811.1| DNA-binding protein HU [Bacillus cereus MM3] gi|229189691|ref|ZP_04316705.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|229195810|ref|ZP_04322570.1| DNA-binding protein HU [Bacillus cereus m1293] gi|228587707|gb|EEK45765.1| DNA-binding protein HU [Bacillus cereus m1293] gi|228593740|gb|EEK51545.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228611235|gb|EEK68493.1| DNA-binding protein HU [Bacillus cereus MM3] gi|228622970|gb|EEK79801.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228628302|gb|EEK85017.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|228645195|gb|EEL01432.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|228651123|gb|EEL07104.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|228656523|gb|EEL12350.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|228662271|gb|EEL17874.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|228692774|gb|EEL46498.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|228698689|gb|EEL51405.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|228713914|gb|EEL65798.1| DNA-binding protein HU [Bacillus cereus F65185] gi|228720109|gb|EEL71693.1| DNA-binding protein HU [Bacillus cereus AH603] gi|228738218|gb|EEL88700.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|228744427|gb|EEL94501.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|228750317|gb|EEM00147.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|228756868|gb|EEM06150.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228763041|gb|EEM11951.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|228769150|gb|EEM17748.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228788126|gb|EEM36082.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795118|gb|EEM42615.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228814444|gb|EEM60709.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833016|gb|EEM78584.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845389|gb|EEM90424.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852382|gb|EEM97176.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228859460|gb|EEN03888.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 93 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 4 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 64 RNPQTGEEIEIAASKVPAFKPGKALKDAV 92 >gi|320539031|ref|ZP_08038706.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Serratia symbiotica str. Tucson] gi|320030964|gb|EFW12968.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Serratia symbiotica str. Tucson] Length = 98 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F++ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRSGQKLKSRV 91 >gi|257793014|ref|YP_003186413.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479706|gb|ACV60024.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 91 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ ++E GLS+KD + TLF+ I + GE ++I F TF ++++ +R Sbjct: 1 MNKRDLIRKTAEETGLSQKDCEAVINTLFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V++ RRV FK + LK+ + Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAV 89 >gi|229822881|ref|ZP_04448951.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC 51271] gi|229787694|gb|EEP23808.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC 51271] Length = 91 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 53/84 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV+ ++ + L++KD T V LF I ++ +GE +++ F TF V+++ +R GRN Sbjct: 4 KAELVEKVAAKTNLTKKDVTATVEALFETIQETLSKGEKVQVIGFGTFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPGFKAGKALK 87 >gi|254282572|ref|ZP_04957540.1| integration host factor, alpha subunit [gamma proteobacterium NOR51-B] gi|219678775|gb|EED35124.1| integration host factor, alpha subunit [gamma proteobacterium NOR51-B] Length = 104 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S++ + + +E GL+++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKSEMAEKLFEELGLNKREAKELVEQFFEEIRICLENNEQMKLSGFGNFDLRDKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARV 92 >gi|241764284|ref|ZP_04762314.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241366353|gb|EER60883.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 116 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + GL++++S + F+ I V G+ +K+S F F ++ K Sbjct: 21 TPALTKAQLADLLFDQIGLNKRESKDMIDAFFDLIAQRLVDGKDVKLSGFGNFQIRTKAP 80 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F ASS LK++I Sbjct: 81 RPGRNPRTGEAIPIQARRVVTFHASSKLKEQI 112 >gi|189345899|ref|YP_001942428.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] gi|189340046|gb|ACD89449.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] Length = 102 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 57/98 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV +I+ + G+++ ++ V LF I +S G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNAIAHKTGMTKNETEAVVDCLFESIIESLKAGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V +DP+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98 >gi|254467817|ref|ZP_05081223.1| integration host factor, alpha subunit [beta proteobacterium KB13] gi|207086627|gb|EDZ63910.1| integration host factor, alpha subunit [beta proteobacterium KB13] Length = 98 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL++ +S V F +I + GE++K+S F F ++ K R Sbjct: 2 TLTKANLSNLLFEQVGLNKTESKEMVEAFFEQIKIALENGESVKLSGFGNFELRTKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +EV I RRVV F +S LK + Sbjct: 62 GRNPKTGEEVPIKARRVVTFHSSQKLKSSV 91 >gi|91792960|ref|YP_562611.1| integration host factor, alpha subunit [Shewanella denitrificans OS217] gi|123356864|sp|Q12NT8|IHFA_SHEDO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91714962|gb|ABE54888.1| integration host factor, alpha subunit [Shewanella denitrificans OS217] Length = 99 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GL+++ + V + F EI ++ GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ G+K Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEAANSGKK 99 >gi|228994303|ref|ZP_04154194.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228765453|gb|EEM14116.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] Length = 93 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 60/91 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+KS+++ +S+K+++ V ++F+ I ++ G+ +++ F TF V+++ +R Sbjct: 2 KKMNKTELIKSVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAV 92 >gi|145633212|ref|ZP_01788943.1| translation initiation factor IF-3 [Haemophilus influenzae 3655] gi|145634922|ref|ZP_01790629.1| integration host factor alpha-subunit [Haemophilus influenzae PittAA] gi|229845127|ref|ZP_04465262.1| integration host factor alpha-subunit [Haemophilus influenzae 6P18H1] gi|144986058|gb|EDJ92648.1| translation initiation factor IF-3 [Haemophilus influenzae 3655] gi|145267788|gb|EDK07785.1| integration host factor alpha-subunit [Haemophilus influenzae PittAA] gi|229811963|gb|EEP47657.1| integration host factor alpha-subunit [Haemophilus influenzae 6P18H1] Length = 96 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92 >gi|260914041|ref|ZP_05920514.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC 43325] gi|260631674|gb|EEX49852.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC 43325] Length = 98 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++ L+++D+ V F EI + GE +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKLNLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVV FK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVSFKPGQKLRTRV 91 >gi|110597798|ref|ZP_01386081.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340523|gb|EAT59006.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 102 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNVIAHRTGLTKNETESVVDCLFESIIDSLKSGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V +DP+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98 >gi|89900357|ref|YP_522828.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens T118] gi|89345094|gb|ABD69297.1| histone-like DNA-binding protein [Rhodoferax ferrireducens T118] Length = 103 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL++ ++ FG L+R+D+ V + + I D+ VRG I+I F +F + + R+ Sbjct: 1 MTRSDLIEELAARFGQLTRRDAEFAVKAILDAINDALVRGHRIEIRGFGSFAINHRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + + V I +RV+ FK L++ + Sbjct: 61 GRNPRNGESVAIPEKRVLHFKPGKALREAV 90 >gi|189500914|ref|YP_001960384.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] gi|189496355|gb|ACE04903.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] Length = 99 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 56/98 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV +IS GL++ ++ V LF+ I DS G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNTISHRTGLTKHETESVVDCLFDSIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ RN +T ++V +D + V FK S K + ++ Sbjct: 61 ERLARNPRTGEKVSVDAKNVPTFKISKEFKSAVSQSLK 98 >gi|269958260|ref|YP_003328047.1| integration host factor, alpha subunit [Anaplasma centrale str. Israel] gi|269848089|gb|ACZ48733.1| integration host factor, alpha subunit [Anaplasma centrale str. Israel] Length = 98 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 56/93 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+TR+ L +I++E G+SR+D+ V + +E+ S VR +KISSF TF V +K Sbjct: 1 MAQTLTRAQLADTINREIGISREDALVLVGEMLDEMVSSLVRDGLLKISSFGTFKVIRKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RV RN +T ++ + V F S +K+ I Sbjct: 61 ERVCRNPKTLEQFIVKEHNTVTFCPSVTMKRLI 93 >gi|163940149|ref|YP_001645033.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|229011627|ref|ZP_04168810.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048] gi|229060025|ref|ZP_04197396.1| DNA-binding protein HU 1 [Bacillus cereus AH603] gi|229133208|ref|ZP_04262040.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196] gi|229167194|ref|ZP_04294935.1| DNA-binding protein HU 1 [Bacillus cereus AH621] gi|163862346|gb|ABY43405.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|228616232|gb|EEK73316.1| DNA-binding protein HU 1 [Bacillus cereus AH621] gi|228650227|gb|EEL06230.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196] gi|228719244|gb|EEL70852.1| DNA-binding protein HU 1 [Bacillus cereus AH603] gi|228749585|gb|EEL99427.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048] Length = 90 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVK++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELVKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|88706038|ref|ZP_01103746.1| Integration host factor alpha-subunit [Congregibacter litoralis KT71] gi|254515023|ref|ZP_05127084.1| integration host factor, alpha subunit [gamma proteobacterium NOR5-3] gi|88699752|gb|EAQ96863.1| Integration host factor alpha-subunit [Congregibacter litoralis KT71] gi|219677266|gb|EED33631.1| integration host factor, alpha subunit [gamma proteobacterium NOR5-3] Length = 101 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S++ + + +E GL+++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRVCLENNEQVKLSGFGNFDLRDKNQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F+ LK R+ + Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94 >gi|16273225|ref|NP_439464.1| integration host factor subunit alpha [Haemophilus influenzae Rd KW20] gi|68249973|ref|YP_249085.1| integration host factor subunit alpha [Haemophilus influenzae 86-028NP] gi|145630800|ref|ZP_01786578.1| predicted transporter [Haemophilus influenzae R3021] gi|145641673|ref|ZP_01797250.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae R3021] gi|260581340|ref|ZP_05849156.1| integration host factor, alpha subunit [Haemophilus influenzae RdAW] gi|260582472|ref|ZP_05850263.1| integration host factor, alpha subunit [Haemophilus influenzae NT127] gi|319897114|ref|YP_004135309.1| integration host factor (ihf), DNA-binding protein, alpha subunit [Haemophilus influenzae F3031] gi|1170524|sp|P43723|IHFA_HAEIN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81335603|sp|Q4QKM2|IHFA_HAEI8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1574771|gb|AAC22959.1| integration host factor, alpha-subunit (himA) [Haemophilus influenzae Rd KW20] gi|68058172|gb|AAX88425.1| integration host factor alpha-subunit [Haemophilus influenzae 86-028NP] gi|144983682|gb|EDJ91142.1| predicted transporter [Haemophilus influenzae R3021] gi|145273720|gb|EDK13589.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae 22.4-21] gi|260092007|gb|EEW75954.1| integration host factor, alpha subunit [Haemophilus influenzae RdAW] gi|260094452|gb|EEW78349.1| integration host factor, alpha subunit [Haemophilus influenzae NT127] gi|309973174|gb|ADO96375.1| Integration host factor, alpha subunit [Haemophilus influenzae R2846] gi|317432618|emb|CBY80979.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus influenzae F3031] Length = 96 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92 >gi|145589020|ref|YP_001155617.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047426|gb|ABP34053.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 107 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+T+++L +++ + GL+++++ + F+ I S G +KIS F F ++ K + Sbjct: 7 SDTVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGQSLEAGTEVKISGFGNFQLRNKSA 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T Q + I RRVV F AS LK Sbjct: 67 RPGRNPKTGQMIPIAARRVVTFHASQKLK 95 >gi|322381812|ref|ZP_08055766.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154200|gb|EFX46522.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 90 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ LS+KD+T+ V +F I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKSDLIAKVAEASELSKKDATKAVDAVFEAIAEALKEGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK+ I Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKEGI 89 >gi|167816064|ref|ZP_02447744.1| integration host factor subunit alpha [Burkholderia pseudomallei 91] Length = 134 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|34496809|ref|NP_901024.1| integration host factor subunit alpha [Chromobacterium violaceum ATCC 12472] gi|81711870|sp|Q7NYC0|IHFA_CHRVO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|34102664|gb|AAQ59029.1| integration host factor alpha-subunit [Chromobacterium violaceum ATCC 12472] Length = 100 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 53/87 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + GL+++++ V + F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFDQVGLNKREAKDMVESFFEEIRLALESGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I RRVV F AS LK Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLK 88 >gi|83720646|ref|YP_443105.1| integration host factor subunit alpha [Burkholderia thailandensis E264] gi|167582112|ref|ZP_02374986.1| integration host factor subunit alpha [Burkholderia thailandensis TXDOH] gi|167620270|ref|ZP_02388901.1| integration host factor subunit alpha [Burkholderia thailandensis Bt4] gi|257139334|ref|ZP_05587596.1| integration host factor subunit alpha [Burkholderia thailandensis E264] gi|83654471|gb|ABC38534.1| integration host factor, alpha subunit [Burkholderia thailandensis E264] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|167562961|ref|ZP_02355877.1| integration host factor subunit alpha [Burkholderia oklahomensis EO147] gi|167570150|ref|ZP_02363024.1| integration host factor subunit alpha [Burkholderia oklahomensis C6786] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|30261605|ref|NP_843982.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42780711|ref|NP_977958.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47526805|ref|YP_018154.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|49184437|ref|YP_027689.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49481024|ref|YP_035726.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143837|ref|YP_082990.1| DNA-binding protein HU [Bacillus cereus E33L] gi|152975033|ref|YP_001374550.1| histone family protein DNA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|163939425|ref|YP_001644309.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|165869502|ref|ZP_02214161.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167633255|ref|ZP_02391580.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|167639174|ref|ZP_02397447.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|170686317|ref|ZP_02877539.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|170706435|ref|ZP_02896895.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|177650638|ref|ZP_02933605.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190568652|ref|ZP_03021557.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|196033321|ref|ZP_03100733.1| DNA-binding protein HU [Bacillus cereus W] gi|196039102|ref|ZP_03106409.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|196046571|ref|ZP_03113795.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|206970635|ref|ZP_03231587.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|206975002|ref|ZP_03235917.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217959087|ref|YP_002337635.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218233805|ref|YP_002366291.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218896539|ref|YP_002444950.1| DNA-binding protein HU [Bacillus cereus G9842] gi|218902721|ref|YP_002450555.1| DNA-binding protein HU [Bacillus cereus AH820] gi|222095239|ref|YP_002529299.1| DNA-binding protein hu [Bacillus cereus Q1] gi|225863473|ref|YP_002748851.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227815643|ref|YP_002815652.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228920320|ref|ZP_04083667.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228932897|ref|ZP_04095763.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229029289|ref|ZP_04185379.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|229166456|ref|ZP_04294212.1| DNA-binding protein HU [Bacillus cereus AH621] gi|229601774|ref|YP_002866013.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|254683097|ref|ZP_05146958.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066] gi|254723685|ref|ZP_05185471.1| DNA-binding protein HU [Bacillus anthracis str. A1055] gi|254734446|ref|ZP_05192158.1| DNA-binding protein HU [Bacillus anthracis str. Western North America USA6153] gi|254740857|ref|ZP_05198545.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B] gi|254755095|ref|ZP_05207129.1| DNA-binding protein HU [Bacillus anthracis str. Vollum] gi|254759632|ref|ZP_05211656.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94] gi|296502179|ref|YP_003663879.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|300117462|ref|ZP_07055252.1| DNA-binding protein HU [Bacillus cereus SJ1] gi|301053147|ref|YP_003791358.1| DNA-binding protein HU [Bacillus anthracis CI] gi|30255459|gb|AAP25468.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42736631|gb|AAS40566.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47501953|gb|AAT30629.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|49178364|gb|AAT53740.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49332580|gb|AAT63226.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977306|gb|AAU18856.1| DNA-binding protein HU [Bacillus cereus E33L] gi|152023785|gb|ABS21555.1| histone family protein DNA-binding protein [Bacillus cytotoxicus NVH 391-98] gi|163861622|gb|ABY42681.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|164714942|gb|EDR20460.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167512964|gb|EDR88337.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|167531293|gb|EDR93971.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|170128533|gb|EDS97400.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|170670014|gb|EDT20755.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|172083782|gb|EDT68842.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190560252|gb|EDV14232.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|195993755|gb|EDX57711.1| DNA-binding protein HU [Bacillus cereus W] gi|196022504|gb|EDX61187.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|196030247|gb|EDX68847.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|206734271|gb|EDZ51441.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|206747021|gb|EDZ58413.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217064829|gb|ACJ79079.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218161762|gb|ACK61754.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218539449|gb|ACK91847.1| DNA-binding protein HU [Bacillus cereus AH820] gi|218542908|gb|ACK95302.1| DNA-binding protein HU [Bacillus cereus G9842] gi|221239297|gb|ACM12007.1| DNA-binding protein HU [Bacillus cereus Q1] gi|225788998|gb|ACO29215.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227005725|gb|ACP15468.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228617030|gb|EEK74099.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228732037|gb|EEL82929.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|228826763|gb|EEM72531.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228839343|gb|EEM84637.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229266182|gb|ACQ47819.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|296323231|gb|ADH06159.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|298725297|gb|EFI65949.1| DNA-binding protein HU [Bacillus cereus SJ1] gi|300375316|gb|ADK04220.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI] gi|324325626|gb|ADY20886.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus YBT-020] gi|326939227|gb|AEA15123.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAV 89 >gi|254466998|ref|ZP_05080409.1| integration host factor, beta subunit [Rhodobacterales bacterium Y4I] gi|206687906|gb|EDZ48388.1| integration host factor, beta subunit [Rhodobacterales bacterium Y4I] Length = 94 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ ++ RG+ +++ F F VK++ SRV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMARGDRVELRGFGAFSVKKRDSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|162456892|ref|YP_001619259.1| integration host factor alpha-subunit [Sorangium cellulosum 'So ce 56'] gi|161167474|emb|CAN98779.1| integration host factor alpha-subunit [Sorangium cellulosum 'So ce 56'] Length = 101 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V+++ S+ G S+K+S V +F + ++ RGE IKIS F F ++ K R Sbjct: 1 MTKAEIVQAVYSRLGGFSKKESADLVDLVFETMKETLGRGEKIKISGFGNFVLRDKRQRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + I RRV+ FKAS ILK+ + Sbjct: 61 GRNPQTGDPILITERRVLNFKASQILKQAL 90 >gi|71278524|ref|YP_269693.1| integration host factor subunit alpha [Colwellia psychrerythraea 34H] gi|123747380|sp|Q47ZS6|IHFA_COLP3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|71144264|gb|AAZ24737.1| integration host factor, alpha subunit [Colwellia psychrerythraea 34H] Length = 97 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F EI ++ G+ +K+S F F ++ K R Sbjct: 2 ALTKAEVAEHLFEKVGLSKRDAKDMVEIFFEEIRETLESGDQVKLSGFGNFDLRLKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I R+VV F+ LK R+ D Sbjct: 62 GRNPKTGEDIPISARKVVTFRPGQKLKSRVED 93 >gi|229174387|ref|ZP_04301919.1| DNA-binding protein HU [Bacillus cereus MM3] gi|228608947|gb|EEK66237.1| DNA-binding protein HU [Bacillus cereus MM3] Length = 93 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 58/91 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T + T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAV 92 >gi|225076633|ref|ZP_03719832.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens NRL30031/H210] gi|241758592|ref|ZP_04756707.1| integration host factor, alpha subunit [Neisseria flavescens SK114] gi|261379897|ref|ZP_05984470.1| integration host factor, alpha subunit [Neisseria subflava NJ9703] gi|319637854|ref|ZP_07992620.1| integration host factor subunit alpha [Neisseria mucosa C102] gi|224952039|gb|EEG33248.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens NRL30031/H210] gi|241321244|gb|EER57416.1| integration host factor, alpha subunit [Neisseria flavescens SK114] gi|284797599|gb|EFC52946.1| integration host factor, alpha subunit [Neisseria subflava NJ9703] gi|317401009|gb|EFV81664.1| integration host factor subunit alpha [Neisseria mucosa C102] Length = 100 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +++ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89 >gi|85711630|ref|ZP_01042687.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina baltica OS145] gi|85694490|gb|EAQ32431.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina baltica OS145] Length = 98 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + ++G+S++D+ V F EI GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEVLFDKYGVSKQDAKDLVEAFFEEIRSVLESGEMVKLSGFGNFELRTKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV FK K R+ Sbjct: 62 GRNPKTGEDIPISARRVVSFKPGQKFKSRV 91 >gi|254178583|ref|ZP_04885238.1| integration host factor alpha subunit [Burkholderia mallei ATCC 10399] gi|160699622|gb|EDP89592.1| integration host factor alpha subunit [Burkholderia mallei ATCC 10399] Length = 115 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 14 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 74 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 105 >gi|53719552|ref|YP_108538.1| integration host factor subunit alpha [Burkholderia pseudomallei K96243] gi|81690335|sp|Q63TM8|IHFA_BURPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|52209966|emb|CAH35938.1| integration host factor alpha-subunit [Burkholderia pseudomallei K96243] Length = 115 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 14 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 74 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 105 >gi|53725309|ref|YP_102781.1| integration host factor subunit alpha [Burkholderia mallei ATCC 23344] gi|121600745|ref|YP_992860.1| integration host factor subunit alpha [Burkholderia mallei SAVP1] gi|124384579|ref|YP_001026200.1| integration host factor subunit alpha [Burkholderia mallei NCTC 10229] gi|126450691|ref|YP_001080530.1| integration host factor subunit alpha [Burkholderia mallei NCTC 10247] gi|134282277|ref|ZP_01768982.1| integration host factor alpha subunit [Burkholderia pseudomallei 305] gi|167003084|ref|ZP_02268874.1| integration host factor alpha subunit [Burkholderia mallei PRL-20] gi|167719842|ref|ZP_02403078.1| integration host factor subunit alpha [Burkholderia pseudomallei DM98] gi|167824439|ref|ZP_02455910.1| integration host factor subunit alpha [Burkholderia pseudomallei 9] gi|167902953|ref|ZP_02490158.1| integration host factor subunit alpha [Burkholderia pseudomallei NCTC 13177] gi|217423737|ref|ZP_03455238.1| integration host factor alpha subunit [Burkholderia pseudomallei 576] gi|237812022|ref|YP_002896473.1| integration host factor, alpha subunit [Burkholderia pseudomallei MSHR346] gi|238562599|ref|ZP_00440142.2| integration host factor, alpha subunit [Burkholderia mallei GB8 horse 4] gi|254179998|ref|ZP_04886597.1| integration host factor alpha subunit [Burkholderia pseudomallei 1655] gi|254197506|ref|ZP_04903928.1| integration host factor alpha subunit [Burkholderia pseudomallei S13] gi|254199733|ref|ZP_04906099.1| integration host factor alpha subunit [Burkholderia mallei FMH] gi|254206055|ref|ZP_04912407.1| integration host factor alpha subunit [Burkholderia mallei JHU] gi|254358426|ref|ZP_04974699.1| integration host factor alpha subunit [Burkholderia mallei 2002721280] gi|52428732|gb|AAU49325.1| integration host factor, alpha subunit [Burkholderia mallei ATCC 23344] gi|121229555|gb|ABM52073.1| integration host factor, alpha subunit [Burkholderia mallei SAVP1] gi|124292599|gb|ABN01868.1| integration host factor, alpha subunit [Burkholderia mallei NCTC 10229] gi|126243561|gb|ABO06654.1| integration host factor alpha subunit [Burkholderia mallei NCTC 10247] gi|134246315|gb|EBA46404.1| integration host factor alpha subunit [Burkholderia pseudomallei 305] gi|147749329|gb|EDK56403.1| integration host factor alpha subunit [Burkholderia mallei FMH] gi|147753498|gb|EDK60563.1| integration host factor alpha subunit [Burkholderia mallei JHU] gi|148027553|gb|EDK85574.1| integration host factor alpha subunit [Burkholderia mallei 2002721280] gi|169654247|gb|EDS86940.1| integration host factor alpha subunit [Burkholderia pseudomallei S13] gi|184210538|gb|EDU07581.1| integration host factor alpha subunit [Burkholderia pseudomallei 1655] gi|217393595|gb|EEC33616.1| integration host factor alpha subunit [Burkholderia pseudomallei 576] gi|237505242|gb|ACQ97560.1| integration host factor, alpha subunit [Burkholderia pseudomallei MSHR346] gi|238522284|gb|EEP85729.1| integration host factor, alpha subunit [Burkholderia mallei GB8 horse 4] gi|243061335|gb|EES43521.1| integration host factor alpha subunit [Burkholderia mallei PRL-20] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|255066467|ref|ZP_05318322.1| integration host factor, alpha subunit [Neisseria sicca ATCC 29256] gi|261365588|ref|ZP_05978471.1| integration host factor, alpha subunit [Neisseria mucosa ATCC 25996] gi|261377866|ref|ZP_05982439.1| integration host factor, alpha subunit [Neisseria cinerea ATCC 14685] gi|261400410|ref|ZP_05986535.1| integration host factor, alpha subunit [Neisseria lactamica ATCC 23970] gi|296314669|ref|ZP_06864610.1| integration host factor, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|298369375|ref|ZP_06980693.1| integration host factor, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|313668794|ref|YP_004049078.1| integration host factor alpha-subunit [Neisseria lactamica ST-640] gi|255049347|gb|EET44811.1| integration host factor, alpha subunit [Neisseria sicca ATCC 29256] gi|269145715|gb|EEZ72133.1| integration host factor, alpha subunit [Neisseria cinerea ATCC 14685] gi|269209855|gb|EEZ76310.1| integration host factor, alpha subunit [Neisseria lactamica ATCC 23970] gi|288565913|gb|EFC87473.1| integration host factor, alpha subunit [Neisseria mucosa ATCC 25996] gi|296838496|gb|EFH22434.1| integration host factor, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|298283378|gb|EFI24865.1| integration host factor, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|309378771|emb|CBX22597.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006256|emb|CBN87718.1| putative integration host factor alpha-subunit [Neisseria lactamica 020-06] Length = 100 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +++ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89 >gi|126454482|ref|YP_001066011.1| integration host factor subunit alpha [Burkholderia pseudomallei 1106a] gi|167845972|ref|ZP_02471480.1| integration host factor subunit alpha [Burkholderia pseudomallei B7210] gi|242316112|ref|ZP_04815128.1| integration host factor alpha subunit [Burkholderia pseudomallei 1106b] gi|126228124|gb|ABN91664.1| integration host factor alpha subunit [Burkholderia pseudomallei 1106a] gi|242139351|gb|EES25753.1| integration host factor alpha subunit [Burkholderia pseudomallei 1106b] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|76811001|ref|YP_333297.1| integration host factor subunit alpha [Burkholderia pseudomallei 1710b] gi|167738844|ref|ZP_02411618.1| integration host factor subunit alpha [Burkholderia pseudomallei 14] gi|167894550|ref|ZP_02481952.1| integration host factor subunit alpha [Burkholderia pseudomallei 7894] gi|167911190|ref|ZP_02498281.1| integration host factor subunit alpha [Burkholderia pseudomallei 112] gi|167919213|ref|ZP_02506304.1| integration host factor subunit alpha [Burkholderia pseudomallei BCC215] gi|254261246|ref|ZP_04952300.1| integration host factor alpha subunit [Burkholderia pseudomallei 1710a] gi|254297833|ref|ZP_04965286.1| integration host factor alpha subunit [Burkholderia pseudomallei 406e] gi|76580454|gb|ABA49929.1| integration host factor, alpha subunit [Burkholderia pseudomallei 1710b] gi|157807473|gb|EDO84643.1| integration host factor alpha subunit [Burkholderia pseudomallei 406e] gi|254219935|gb|EET09319.1| integration host factor alpha subunit [Burkholderia pseudomallei 1710a] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|229025157|ref|ZP_04181581.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|228736090|gb|EEL86661.1| DNA-binding protein HU [Bacillus cereus AH1272] Length = 90 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89 >gi|94971131|ref|YP_593179.1| nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345] gi|94553181|gb|ABF43105.1| bacterial nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345] Length = 110 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +S+ L+RKDS V T+F+ I S G+ I+I F +F +Q+ RVG Sbjct: 1 MTKADLIDEVSRLAELTRKDSEVIVETIFDSIVHSLRAGDKIEIRGFGSFRTRQRKPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V++ +++ FK S LK + D Sbjct: 61 RNPKTGDRVEVPAKKIPFFKPSKELKDMVND 91 >gi|226199688|ref|ZP_03795241.1| integration host factor alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|225928274|gb|EEH24308.1| integration host factor alpha subunit [Burkholderia pseudomallei Pakistan 9] Length = 131 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 30 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 90 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 121 >gi|325528721|gb|EGD05791.1| integration host factor subunit alpha [Burkholderia sp. TJI49] Length = 131 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|254188588|ref|ZP_04895099.1| integration host factor alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|157936267|gb|EDO91937.1| integration host factor alpha subunit [Burkholderia pseudomallei Pasteur 52237] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|30019658|ref|NP_831289.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|75764066|ref|ZP_00743668.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|29895202|gb|AAP08490.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|74488445|gb|EAO52059.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 25 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 84 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 85 RNPQTGEEIEIAASKVPAFKPGKALKDAV 113 >gi|167836846|ref|ZP_02463729.1| integration host factor subunit alpha [Burkholderia thailandensis MSMB43] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|118477063|ref|YP_894214.1| DNA-binding protein HU [Bacillus thuringiensis str. Al Hakam] gi|118416288|gb|ABK84707.1| bacterial nucleoid protein Hbs [Bacillus thuringiensis str. Al Hakam] Length = 117 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 28 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 88 RNPQTGEEIEIAASKVPAFKPGKALKDAV 116 >gi|238027725|ref|YP_002911956.1| integration host factor subunit alpha [Burkholderia glumae BGR1] gi|237876919|gb|ACR29252.1| Integration host factor alpha subunit [Burkholderia glumae BGR1] Length = 133 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123 >gi|65318875|ref|ZP_00391834.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis str. A2012] gi|228938721|ref|ZP_04101325.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951986|ref|ZP_04114083.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957885|ref|ZP_04119625.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228978213|ref|ZP_04138590.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228984688|ref|ZP_04144861.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229043354|ref|ZP_04191072.1| DNA-binding protein HU [Bacillus cereus AH676] gi|229078792|ref|ZP_04211345.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|229096101|ref|ZP_04227074.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|229102213|ref|ZP_04232922.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|229109065|ref|ZP_04238665.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|229115057|ref|ZP_04244467.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|229144208|ref|ZP_04272622.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|229149807|ref|ZP_04278036.1| DNA-binding protein HU [Bacillus cereus m1550] gi|229178017|ref|ZP_04305389.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|229183804|ref|ZP_04311021.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|228599653|gb|EEK57256.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|228605505|gb|EEK62954.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|228633671|gb|EEK90271.1| DNA-binding protein HU [Bacillus cereus m1550] gi|228639216|gb|EEK95632.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|228668197|gb|EEL23629.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228674343|gb|EEL29587.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|228681114|gb|EEL35282.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|228687061|gb|EEL40966.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|228704474|gb|EEL56907.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228726002|gb|EEL77241.1| DNA-binding protein HU [Bacillus cereus AH676] gi|228775082|gb|EEM23475.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781230|gb|EEM29431.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228801801|gb|EEM48678.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807711|gb|EEM54233.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820962|gb|EEM66983.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 104 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 15 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 74 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 75 RNPQTGEEIEIAASKVPAFKPGKALKDAV 103 >gi|255019929|ref|ZP_05292003.1| Integration host factor alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254970588|gb|EET28076.1| Integration host factor alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 99 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V + GL+++++ V + F+ I ++ RGE +K+S F F +++K R G Sbjct: 3 VTKAEIVDMLYDTMGLNKREAKGIVESFFDSIRETLARGEEVKLSGFGNFTLREKNPRPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+ I RRVV F S LK + Sbjct: 63 RNPKTGVEITITARRVVTFHPSQKLKAYV 91 >gi|126438744|ref|YP_001058758.1| integration host factor subunit alpha [Burkholderia pseudomallei 668] gi|126218237|gb|ABN81743.1| integration host factor alpha subunit [Burkholderia pseudomallei 668] Length = 134 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 124 >gi|167587357|ref|ZP_02379745.1| integration host factor subunit alpha [Burkholderia ubonensis Bu] Length = 133 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123 >gi|146319301|ref|YP_001199013.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33] gi|146321504|ref|YP_001201215.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33] gi|223932925|ref|ZP_03624920.1| histone family protein DNA-binding protein [Streptococcus suis 89/1591] gi|253752334|ref|YP_003025475.1| DNA-binding protein HU [Streptococcus suis SC84] gi|253754160|ref|YP_003027301.1| DNA-binding protein HU [Streptococcus suis P1/7] gi|253756094|ref|YP_003029234.1| DNA-binding protein HU [Streptococcus suis BM407] gi|330833271|ref|YP_004402096.1| nucleoid DNA-binding protein [Streptococcus suis ST3] gi|145690107|gb|ABP90613.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33] gi|145692310|gb|ABP92815.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33] gi|223898371|gb|EEF64737.1| histone family protein DNA-binding protein [Streptococcus suis 89/1591] gi|251816623|emb|CAZ52263.1| DNA-binding protein HU [Streptococcus suis SC84] gi|251818558|emb|CAZ56391.1| DNA-binding protein HU [Streptococcus suis BM407] gi|251820406|emb|CAR47035.1| DNA-binding protein HU [Streptococcus suis P1/7] gi|292558933|gb|ADE31934.1| Histone-like bacterial DNA-binding protein [Streptococcus suis GZ1] gi|329307494|gb|AEB81910.1| nucleoid DNA-binding protein [Streptococcus suis ST3] Length = 91 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E+KI +V FKA LK + Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALKDAV 90 >gi|78066092|ref|YP_368861.1| integration host factor subunit alpha [Burkholderia sp. 383] gi|107022554|ref|YP_620881.1| integration host factor subunit alpha [Burkholderia cenocepacia AU 1054] gi|116689503|ref|YP_835126.1| integration host factor subunit alpha [Burkholderia cenocepacia HI2424] gi|170732808|ref|YP_001764755.1| integration host factor subunit alpha [Burkholderia cenocepacia MC0-3] gi|206559853|ref|YP_002230617.1| integration host factor subunit alpha [Burkholderia cenocepacia J2315] gi|254245604|ref|ZP_04938925.1| Integration host factor alpha subunit [Burkholderia cenocepacia PC184] gi|254252552|ref|ZP_04945870.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158] gi|77966837|gb|ABB08217.1| Integration host factor, alpha subunit [Burkholderia sp. 383] gi|105892743|gb|ABF75908.1| integration host factor, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116647592|gb|ABK08233.1| integration host factor, alpha subunit [Burkholderia cenocepacia HI2424] gi|124870380|gb|EAY62096.1| Integration host factor alpha subunit [Burkholderia cenocepacia PC184] gi|124895161|gb|EAY69041.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158] gi|169816050|gb|ACA90633.1| integration host factor, alpha subunit [Burkholderia cenocepacia MC0-3] gi|198035894|emb|CAR51786.1| integration host factor alpha-subunit [Burkholderia cenocepacia J2315] Length = 131 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|313884094|ref|ZP_07817860.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8] gi|312620541|gb|EFR31964.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8] Length = 91 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 52/84 (61%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV+ ++ + L++KD T V LF I ++ GE +++ F TF V+++ +R GRN Sbjct: 4 KAELVEQVAAKTNLTKKDVTATVEALFETIQETLANGEKVQVIGFGTFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FKA LK Sbjct: 64 PQTGEEIEIAATKVPGFKAGKALK 87 >gi|16079336|ref|NP_390160.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. 168] gi|154686527|ref|YP_001421688.1| hypothetical protein RBAM_020950 [Bacillus amyloliquefaciens FZB42] gi|221310195|ref|ZP_03592042.1| hypothetical protein Bsubs1_12521 [Bacillus subtilis subsp. subtilis str. 168] gi|221314518|ref|ZP_03596323.1| hypothetical protein BsubsN3_12437 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319440|ref|ZP_03600734.1| hypothetical protein BsubsJ_12363 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323716|ref|ZP_03605010.1| hypothetical protein BsubsS_12492 [Bacillus subtilis subsp. subtilis str. SMY] gi|296332983|ref|ZP_06875440.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674913|ref|YP_003866585.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. spizizenii str. W23] gi|308174071|ref|YP_003920776.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens DSM 7] gi|311068794|ref|YP_003973717.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus atrophaeus 1942] gi|321311749|ref|YP_004204036.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis BSn5] gi|118263|sp|P08821|DBH1_BACSU RecName: Full=DNA-binding protein HU 1; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|39936|emb|CAA36669.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. JH642] gi|39938|emb|CAA47064.1| hbsu [Bacillus subtilis] gi|143071|gb|AAA22535.1| hubgl [Bacillus subtilis] gi|143073|gb|AAA22536.1| hubsub [Bacillus subtilis] gi|2634697|emb|CAB14195.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. 168] gi|154352378|gb|ABS74457.1| HupA [Bacillus amyloliquefaciens FZB42] gi|291484703|dbj|BAI85778.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. natto BEST195] gi|296149834|gb|EFG90726.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413157|gb|ADM38276.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. spizizenii str. W23] gi|307606935|emb|CBI43306.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens DSM 7] gi|310869311|gb|ADP32786.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus atrophaeus 1942] gi|320018023|gb|ADV93009.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis BSn5] gi|328552803|gb|AEB23295.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus amyloliquefaciens TA208] gi|328912401|gb|AEB63997.1| DNA-binding protein HU 1 [Bacillus amyloliquefaciens LL3] gi|383705|prf||1904151A DNA-binding protein HBsu Length = 92 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >gi|152976119|ref|YP_001375636.1| histone family protein DNA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024871|gb|ABS22641.1| histone family protein DNA-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 90 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+KS++++ +S+K++T V ++ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKSVAQKAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89 >gi|161524946|ref|YP_001579958.1| integration host factor subunit alpha [Burkholderia multivorans ATCC 17616] gi|160342375|gb|ABX15461.1| integration host factor, alpha subunit [Burkholderia multivorans ATCC 17616] Length = 136 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|56695706|ref|YP_166057.1| integration host factor subunit beta [Ruegeria pomeroyi DSS-3] gi|81676380|sp|Q5LV98|IHFB_SILPO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|56677443|gb|AAV94109.1| integration host factor, beta subunit [Ruegeria pomeroyi DSS-3] Length = 94 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ D+ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDTVHVEEKHVPFFKTGKLLRDRL 90 >gi|147676456|ref|YP_001210671.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] gi|146272553|dbj|BAF58302.1| bacterial nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 91 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ L++KD+ + ++ + + ++ RG+ +++ F TF ++++ +R G Sbjct: 1 MNKAELISNVAEKTELTKKDAEKAISAFLDTVGEALARGDKVQLVGFGTFEIRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I RV VFKA L+ ++ Sbjct: 61 RNPQTGEEINIAAARVPVFKAGKALRDAVL 90 >gi|225023835|ref|ZP_03713027.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC 23834] gi|224943309|gb|EEG24518.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC 23834] Length = 100 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +S+ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSNISKNDAKEIVELFFEEIRATLERGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGKEVPITARRVVTFHASQKLK 89 >gi|115351418|ref|YP_773257.1| integration host factor subunit alpha [Burkholderia ambifaria AMMD] gi|172060457|ref|YP_001808109.1| integration host factor subunit alpha [Burkholderia ambifaria MC40-6] gi|115281406|gb|ABI86923.1| integration host factor, alpha subunit [Burkholderia ambifaria AMMD] gi|171992974|gb|ACB63893.1| integration host factor, alpha subunit [Burkholderia ambifaria MC40-6] Length = 131 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|30021822|ref|NP_833453.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|30263731|ref|NP_846108.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42782806|ref|NP_980053.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47529146|ref|YP_020495.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47568219|ref|ZP_00238922.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49186575|ref|YP_029827.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49479195|ref|YP_037793.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141761|ref|YP_085068.1| DNA-binding protein HU [Bacillus cereus E33L] gi|167636022|ref|ZP_02394328.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|167639780|ref|ZP_02398049.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|170706770|ref|ZP_02897228.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|177652045|ref|ZP_02934591.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190568477|ref|ZP_03021384.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|196034180|ref|ZP_03101590.1| DNA-binding protein HU [Bacillus cereus W] gi|196038306|ref|ZP_03105615.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|196044455|ref|ZP_03111690.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|206968651|ref|ZP_03229606.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|217961152|ref|YP_002339720.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218235888|ref|YP_002368531.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218898826|ref|YP_002447237.1| DNA-binding protein HU [Bacillus cereus G9842] gi|218904856|ref|YP_002452690.1| DNA-binding protein HU [Bacillus cereus AH820] gi|222097183|ref|YP_002531240.1| DNA-binding protein hu [Bacillus cereus Q1] gi|225865703|ref|YP_002751081.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227813371|ref|YP_002813380.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228922442|ref|ZP_04085744.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228928776|ref|ZP_04091810.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229157305|ref|ZP_04285383.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|229162660|ref|ZP_04290617.1| DNA-binding protein HU [Bacillus cereus R309803] gi|229604479|ref|YP_002867967.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|254683564|ref|ZP_05147424.1| HU family DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254721154|ref|ZP_05182945.1| HU family DNA-binding protein [Bacillus anthracis str. A1055] gi|254735764|ref|ZP_05193470.1| HU family DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254739537|ref|ZP_05197232.1| HU family DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751106|ref|ZP_05203145.1| HU family DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759423|ref|ZP_05211448.1| HU family DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296504231|ref|YP_003665931.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|301055218|ref|YP_003793429.1| histone family protein DNA-binding protein [Bacillus anthracis CI] gi|29897378|gb|AAP10654.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|30258375|gb|AAP27594.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42738733|gb|AAS42661.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47504294|gb|AAT32970.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47555047|gb|EAL13395.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49180502|gb|AAT55878.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49330751|gb|AAT61397.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975230|gb|AAU16780.1| DNA-binding protein HU [Bacillus cereus E33L] gi|167512181|gb|EDR87558.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|167528534|gb|EDR91296.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|170128188|gb|EDS97057.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|172082414|gb|EDT67479.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190560481|gb|EDV14459.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|195993254|gb|EDX57212.1| DNA-binding protein HU [Bacillus cereus W] gi|196024490|gb|EDX63162.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|196030714|gb|EDX69312.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|206735692|gb|EDZ52850.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|217063322|gb|ACJ77572.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218163845|gb|ACK63837.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218538783|gb|ACK91181.1| DNA-binding protein HU [Bacillus cereus AH820] gi|218545282|gb|ACK97676.1| DNA-binding protein HU [Bacillus cereus G9842] gi|221241241|gb|ACM13951.1| DNA-binding protein HU [Bacillus cereus Q1] gi|225787211|gb|ACO27428.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227004634|gb|ACP14377.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228620542|gb|EEK77411.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228626032|gb|EEK82781.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|228830861|gb|EEM76464.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228837156|gb|EEM82495.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229268887|gb|ACQ50524.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|296325283|gb|ADH08211.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|300377387|gb|ADK06291.1| histone family protein DNA-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324327620|gb|ADY22880.1| HU family DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326941437|gb|AEA17333.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89 >gi|149183707|ref|ZP_01862118.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. SG-1] gi|148848589|gb|EDL62828.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. SG-1] Length = 90 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEAAELSKKDATKAVDAVFESIQDALANGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEISASKVPAFKPGKALKDAV 89 >gi|149204022|ref|ZP_01880990.1| integration host factor subunit beta [Roseovarius sp. TM1035] gi|149142464|gb|EDM30509.1| integration host factor subunit beta [Roseovarius sp. TM1035] Length = 93 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+FNEI D+ G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFNEITDALAEGNRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVHVEEKNVPFFKTGKLLRDRL 90 >gi|190575245|ref|YP_001973090.1| integration host factor subunit alpha [Stenotrophomonas maltophilia K279a] gi|194366572|ref|YP_002029182.1| integration host factor subunit alpha [Stenotrophomonas maltophilia R551-3] gi|254522974|ref|ZP_05135029.1| integration host factor, alpha subunit [Stenotrophomonas sp. SKA14] gi|226709756|sp|B4SQG8|IHFA_STRM5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709757|sp|B2FN73|IHFA_STRMK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|190013167|emb|CAQ46800.1| putative Integration host factor alpha-subunit [Stenotrophomonas maltophilia K279a] gi|194349376|gb|ACF52499.1| integration host factor, alpha subunit [Stenotrophomonas maltophilia R551-3] gi|219720565|gb|EED39090.1| integration host factor, alpha subunit [Stenotrophomonas sp. SKA14] Length = 99 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + ++ +G +K+S F F +++K R Sbjct: 2 ALTKAEMAEKLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91 >gi|330816675|ref|YP_004360380.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3] gi|327369068|gb|AEA60424.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3] Length = 133 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123 >gi|134295553|ref|YP_001119288.1| integration host factor subunit alpha [Burkholderia vietnamiensis G4] gi|134138710|gb|ABO54453.1| integration host factor, alpha subunit [Burkholderia vietnamiensis G4] Length = 128 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123 >gi|225181422|ref|ZP_03734865.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225167820|gb|EEG76628.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 90 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ GL++KD+ + V +F+ I D+ +G+ +++ F TF V+++ +R G Sbjct: 1 MNKSELISNVAENAGLTKKDTEKVVNAIFDTIGDALAKGDKVQVIGFGTFDVRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + I +V VFKA LK Sbjct: 61 RNPATGDTITIPAVKVPVFKAGKALK 86 >gi|30020445|ref|NP_832076.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|75762127|ref|ZP_00742029.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206971712|ref|ZP_03232662.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|218232049|ref|YP_002367059.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218897327|ref|YP_002445738.1| DNA-binding protein HU [Bacillus cereus G9842] gi|228900972|ref|ZP_04065185.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222] gi|228908124|ref|ZP_04071972.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] gi|228921073|ref|ZP_04084408.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939512|ref|ZP_04102100.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952694|ref|ZP_04114768.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958629|ref|ZP_04120347.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228965347|ref|ZP_04126439.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228972365|ref|ZP_04132976.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978978|ref|ZP_04139343.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407] gi|229044105|ref|ZP_04191791.1| DNA-binding protein HU 1 [Bacillus cereus AH676] gi|229069884|ref|ZP_04203166.1| DNA-binding protein HU 1 [Bacillus cereus F65185] gi|229109797|ref|ZP_04239382.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15] gi|229127753|ref|ZP_04256742.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4] gi|229144952|ref|ZP_04273348.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24] gi|229150577|ref|ZP_04278792.1| DNA-binding protein HU 1 [Bacillus cereus m1550] gi|229178719|ref|ZP_04306083.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] gi|229190436|ref|ZP_04317436.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876] gi|296502915|ref|YP_003664615.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|29895996|gb|AAP09277.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|74490387|gb|EAO53701.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206733697|gb|EDZ50869.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|218160006|gb|ACK59998.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218543334|gb|ACK95728.1| DNA-binding protein HU [Bacillus cereus G9842] gi|228593049|gb|EEK50868.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876] gi|228604877|gb|EEK62334.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] gi|228632886|gb|EEK89500.1| DNA-binding protein HU 1 [Bacillus cereus m1550] gi|228638474|gb|EEK94908.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24] gi|228655830|gb|EEL11679.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4] gi|228673642|gb|EEL28901.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15] gi|228713287|gb|EEL65180.1| DNA-binding protein HU 1 [Bacillus cereus F65185] gi|228725218|gb|EEL76489.1| DNA-binding protein HU 1 [Bacillus cereus AH676] gi|228780760|gb|EEM28973.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407] gi|228787382|gb|EEM35350.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794337|gb|EEM41851.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228801050|gb|EEM47949.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228806970|gb|EEM53515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820212|gb|EEM66249.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838619|gb|EEM83925.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228851542|gb|EEM96348.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] gi|228858670|gb|EEN03117.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222] gi|296323967|gb|ADH06895.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|326940059|gb|AEA15955.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|207999|gb|AAA72912.1| HBsu protein [synthetic construct] Length = 98 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R G Sbjct: 7 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 66 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 67 RNPQTGEEIEIPASKVPAFKPGKALKDAV 95 >gi|163941411|ref|YP_001646295.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|229012904|ref|ZP_04170069.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|229065846|ref|ZP_04201044.1| DNA-binding protein HU [Bacillus cereus AH603] gi|229134528|ref|ZP_04263339.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|163863608|gb|ABY44667.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|228648921|gb|EEL04945.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|228715422|gb|EEL67252.1| DNA-binding protein HU [Bacillus cereus AH603] gi|228748158|gb|EEL98018.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] Length = 90 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T + T+ I +S GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89 >gi|170701126|ref|ZP_02892100.1| integration host factor, alpha subunit [Burkholderia ambifaria IOP40-10] gi|171318448|ref|ZP_02907603.1| integration host factor, alpha subunit [Burkholderia ambifaria MEX-5] gi|170133948|gb|EDT02302.1| integration host factor, alpha subunit [Burkholderia ambifaria IOP40-10] gi|171096362|gb|EDT41264.1| integration host factor, alpha subunit [Burkholderia ambifaria MEX-5] Length = 128 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123 >gi|82701627|ref|YP_411193.1| integration host factor subunit alpha [Nitrosospira multiformis ATCC 25196] gi|123727231|sp|Q2YBS0|IHFA_NITMU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|82409692|gb|ABB73801.1| integration host factor, alpha subunit [Nitrosospira multiformis ATCC 25196] Length = 101 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 56/97 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ G +++++ V + + E+ + G+ +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +E+ I RRVV F AS LK + + G+ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKAMVEKNQHGK 98 >gi|260428004|ref|ZP_05781983.1| integration host factor, beta subunit [Citreicella sp. SE45] gi|260422496|gb|EEX15747.1| integration host factor, beta subunit [Citreicella sp. SE45] Length = 93 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I++E L ++D R V T+F EI ++ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDAVEVEEKHVPFFKTGKLLRDRL 90 >gi|15602493|ref|NP_245565.1| hypothetical protein PM0628 [Pasteurella multocida subsp. multocida str. Pm70] gi|14194851|sp|Q9CN18|IHFA_PASMU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|12720902|gb|AAK02712.1| HimA [Pasteurella multocida subsp. multocida str. Pm70] Length = 98 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L ++ ++ L+++D+ V F EI + GE +K+S F F ++ K SR Sbjct: 2 TLTKVELADNLIEKLHLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVV FK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVAFKPGQKLRARV 91 >gi|189350306|ref|YP_001945934.1| integration host factor subunit alpha [Burkholderia multivorans ATCC 17616] gi|189334328|dbj|BAG43398.1| integration host factor alpha subunit [Burkholderia multivorans ATCC 17616] Length = 133 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 123 >gi|319794585|ref|YP_004156225.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] gi|315597048|gb|ADU38114.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] Length = 123 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + ++ GL++++S V F + S + G +KIS F F ++ K Sbjct: 13 TPALTKAHLADLLFEQIGLNKRESKDMVEAFFELVASSLIEGTDVKISGFGNFQIRVKAP 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRV F AS+ LK++I Sbjct: 73 RPGRNPRTGEAIPIGERRVATFHASAKLKEQI 104 >gi|221197740|ref|ZP_03570786.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2M] gi|221204702|ref|ZP_03577719.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2] gi|221214897|ref|ZP_03587865.1| integration host factor, alpha subunit [Burkholderia multivorans CGD1] gi|221165124|gb|EED97602.1| integration host factor, alpha subunit [Burkholderia multivorans CGD1] gi|221175559|gb|EEE07989.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2] gi|221181672|gb|EEE14073.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2M] Length = 114 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 13 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T + + I RRVV F AS LK Sbjct: 73 RPGRNPKTGEAIPIAARRVVTFHASQKLK 101 >gi|239814620|ref|YP_002943530.1| integration host factor, subunit beta [Variovorax paradoxus S110] gi|239801197|gb|ACS18264.1| integration host factor, beta subunit [Variovorax paradoxus S110] Length = 104 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 6/104 (5%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ F L+ +D+ V T+ + + D+ VRG I+I F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVTRRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-----DMRGRKC 102 GRN ++ + V+I +RV FK L++ + D +GRK Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELDAKGRKA 104 >gi|217976981|ref|YP_002361128.1| histone family protein DNA-binding protein [Methylocella silvestris BL2] gi|217502357|gb|ACK49766.1| histone family protein DNA-binding protein [Methylocella silvestris BL2] Length = 118 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 3 KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T TR+ L+ ++ + LSR + EI ++ VRG+ +K+ SF F V+ K Sbjct: 16 RTATRAALLDAVYEACPNLSRAQARDIFEMALEEIAEALVRGDCVKLRSFGLFSVRAKRE 75 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R+GRN +T E I PRRV+ FK S +L Sbjct: 76 RIGRNPRTGVEAPIKPRRVLTFKPSPVL 103 >gi|300703884|ref|YP_003745486.1| integration host factor (ihf) subunit alpha [Ralstonia solanacearum CFBP2957] gi|299071547|emb|CBJ42871.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum CFBP2957] Length = 140 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 39 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK + Sbjct: 99 GRNPKTGEIIPITARRVVTFHASQKLKALV 128 >gi|148826992|ref|YP_001291745.1| integration host factor subunit alpha [Haemophilus influenzae PittGG] gi|166918507|sp|A5UF06|IHFA_HAEIG RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148718234|gb|ABQ99361.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG] Length = 96 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92 >gi|207724057|ref|YP_002254455.1| integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum MolK2] gi|206589266|emb|CAQ36228.1| integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum MolK2] Length = 140 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 39 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK + Sbjct: 99 GRNPKTGEIIPITARRVVTFHASQKLKALV 128 >gi|299066592|emb|CBJ37782.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum CMR15] Length = 139 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 38 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 97 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK + Sbjct: 98 GRNPKTGEIIPITARRVVTFHASQKLKALV 127 >gi|187929051|ref|YP_001899538.1| integration host factor subunit alpha [Ralstonia pickettii 12J] gi|187725941|gb|ACD27106.1| integration host factor, alpha subunit [Ralstonia pickettii 12J] Length = 138 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 55/87 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 37 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 96 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 97 GRNPKTGEIIPITARRVVTFHASQKLK 123 >gi|295398952|ref|ZP_06808934.1| histone family protein DNA-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110441|ref|YP_003988757.1| histone family protein DNA-binding protein [Geobacillus sp. Y4.1MC1] gi|294978418|gb|EFG54014.1| histone family protein DNA-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215542|gb|ADP74146.1| histone family protein DNA-binding protein [Geobacillus sp. Y4.1MC1] gi|227370|prf||1702428A DNA binding protein HU Length = 90 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+T+ V +F I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINTVAEISGLSKKDATKAVDAVFESITEALKKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALK 86 >gi|207742952|ref|YP_002259344.1| integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum IPO1609] gi|206594347|emb|CAQ61274.1| probable integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum IPO1609] Length = 140 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 39 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK + Sbjct: 99 GRNPKTGEIIPITARRVVTFHASQKLKALV 128 >gi|238022788|ref|ZP_04603214.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147] gi|237865991|gb|EEP67127.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147] Length = 120 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +S+ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 24 TLTKAELADILVEKVSSISKHDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQR 83 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 84 PGRNPKTGEEVAITARRVVTFHASQKLK 111 >gi|285017870|ref|YP_003375581.1| integration host factor alpha-subunit (ihf-alpha) protein [Xanthomonas albilineans GPE PC73] gi|283473088|emb|CBA15593.1| putative integration host factor alpha-subunit (ihf-alpha) protein [Xanthomonas albilineans] Length = 99 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + ++ +G +K+S F F +++K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91 >gi|145636219|ref|ZP_01791889.1| predicted transporter [Haemophilus influenzae PittHH] gi|145270741|gb|EDK10674.1| predicted transporter [Haemophilus influenzae PittHH] Length = 96 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS+ D+ V EI S G +K+S F F ++ K SR Sbjct: 3 TITKIDIIEYLSDKYQLSKYDTKNVVENFLEEIRSSLESGHDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARV 92 >gi|212638931|ref|YP_002315451.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus flavithermus WK1] gi|212560411|gb|ACJ33466.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus flavithermus WK1] Length = 101 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+++ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 12 MNKTELINAVAEASGLSKKDASKAVDAVFDAITEALKNGDKVQLIGFGNFEVRERAARKG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 72 RNPQTGEEIEIAASKVPAFKPGKALKDAV 100 >gi|229096853|ref|ZP_04227822.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29] gi|229102961|ref|ZP_04233650.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28] gi|229115841|ref|ZP_04245239.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3] gi|229161324|ref|ZP_04289309.1| DNA-binding protein HU 1 [Bacillus cereus R309803] gi|228622138|gb|EEK78979.1| DNA-binding protein HU 1 [Bacillus cereus R309803] gi|228667584|gb|EEL23028.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3] gi|228680376|gb|EEL34564.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28] gi|228686463|gb|EEL40372.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29] Length = 90 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|254460326|ref|ZP_05073742.1| integration host factor, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206676915|gb|EDZ41402.1| integration host factor, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 93 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++ E L ++D R V T+F EI ++ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKLADENPHLYQRDVERIVNTVFEEITETMARGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVPVEEKHVPFFKTGKLLRDRL 90 >gi|90961862|ref|YP_535778.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] gi|301299465|ref|ZP_07205740.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821056|gb|ABD99695.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] gi|300852928|gb|EFK80537.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] Length = 91 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 53/84 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L++ ++++ GL++KD+T V +F I D+ V GE +++ F F V+++ +R GRN Sbjct: 4 KAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FK LK Sbjct: 64 PQTGEEIEIPASKVPAFKPGKSLK 87 >gi|83748303|ref|ZP_00945328.1| Integration host factor alpha-subunit [Ralstonia solanacearum UW551] gi|83725035|gb|EAP72188.1| Integration host factor alpha-subunit [Ralstonia solanacearum UW551] Length = 175 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 56/91 (61%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 73 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 132 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F AS LK + Sbjct: 133 PGRNPKTGEIIPITARRVVTFHASQKLKALV 163 >gi|126731019|ref|ZP_01746827.1| integration host factor beta subunit [Sagittula stellata E-37] gi|126708321|gb|EBA07379.1| integration host factor beta subunit [Sagittula stellata E-37] Length = 93 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F EI ++ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDSVEVEEKHVPFFKTGKLLRDRL 90 >gi|152975541|ref|YP_001375058.1| histone family protein DNA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024293|gb|ABS22063.1| histone family protein DNA-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 90 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQSADISQKDASVAVQSVFDTITNALQNGDKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|309782533|ref|ZP_07677256.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA] gi|308918624|gb|EFP64298.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA] Length = 138 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 55/87 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 37 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 96 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 97 GRNPKTGEIIPITARRVVTFHASQKLK 123 >gi|73540975|ref|YP_295495.1| integration host factor subunit alpha [Ralstonia eutropha JMP134] gi|72118388|gb|AAZ60651.1| Integration host factor, alpha subunit [Ralstonia eutropha JMP134] Length = 138 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 54/87 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + + GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 39 TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 99 GRNPKTGEVIPITARRVVTFHASQKLK 125 >gi|261367126|ref|ZP_05980009.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176] gi|282571249|gb|EFB76784.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176] Length = 90 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ +++ E L++KD+ + V T N I ++ G+ + + F TF V+++ +R G Sbjct: 1 MTKVELIAAVANEANLTKKDAEQAVNTALNAITEALKNGDKVTLVGFGTFEVRERPARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+ I+ ++ FKA LK Sbjct: 61 RNPQTGAEITIEASKLPAFKAGKALK 86 >gi|227890888|ref|ZP_04008693.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius ATCC 11741] gi|227867297|gb|EEJ74718.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius ATCC 11741] Length = 100 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 54/87 (62%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L++ ++++ GL++KD+T V +F I D+ V GE +++ F F V+++ +R GRN Sbjct: 13 KAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGRN 72 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I +V FK LK + Sbjct: 73 PQTGEEIEIPASKVPAFKPGKSLKDAV 99 >gi|119476516|ref|ZP_01616867.1| integration host factor alpha subunit [marine gamma proteobacterium HTCC2143] gi|119450380|gb|EAW31615.1| integration host factor alpha subunit [marine gamma proteobacterium HTCC2143] Length = 102 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S + + + +E GL+++++ V F EI S E +K+S F F ++ K R Sbjct: 3 ALTKSVMAEKLYEELGLNKREAKEVVEHFFEEIRYSLEDNEQVKLSGFGNFDLRDKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKVRV 92 >gi|17546302|ref|NP_519704.1| integration host factor subunit alpha [Ralstonia solanacearum GMI1000] gi|21362602|sp|Q8XZ23|IHFA_RALSO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|17428599|emb|CAD15285.1| probable integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum GMI1000] Length = 104 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 55/87 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 3 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 63 GRNPKTGEIIPITARRVVTFHASQKLK 89 >gi|294670490|ref|ZP_06735370.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307769|gb|EFE49012.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 102 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +++ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSSVTKNDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPISARRVVTFHASQKLK 89 >gi|261406040|ref|YP_003242281.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|315646418|ref|ZP_07899536.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] gi|329929885|ref|ZP_08283561.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5] gi|261282503|gb|ACX64474.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|315278061|gb|EFU41381.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] gi|328935863|gb|EGG32324.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5] Length = 90 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ LS+KD+T+ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKSDLITQVAESTELSKKDATKAVDAVFDAISEALQSGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I ++ FK LK I Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGI 89 >gi|116333426|ref|YP_794953.1| nucleoid DNA-binding protein [Lactobacillus brevis ATCC 367] gi|116098773|gb|ABJ63922.1| bacterial nucleoid protein Hbs [Lactobacillus brevis ATCC 367] Length = 91 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV ++ GL++KD+T V +F+ + + +GE +++ F F V+++ +R GRN Sbjct: 4 KAQLVSDVATATGLTKKDATAAVDAVFDSVQATLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT QE++I +V FK LK + Sbjct: 64 PQTGQEIQIPASKVPAFKPGKALKDAV 90 >gi|241663237|ref|YP_002981597.1| integration host factor subunit alpha [Ralstonia pickettii 12D] gi|240865264|gb|ACS62925.1| integration host factor, alpha subunit [Ralstonia pickettii 12D] Length = 138 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 55/87 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 37 TLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 96 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 97 GRNPKTGEIIPITARRVVTFHASQKLK 123 >gi|319792456|ref|YP_004154096.1| integration host factor, beta subunit [Variovorax paradoxus EPS] gi|315594919|gb|ADU35985.1| integration host factor, beta subunit [Variovorax paradoxus EPS] Length = 107 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ F L+ +D+ V T+ + + D+ VRG I+I F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVNRRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V+I +RV FK L++ + Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAV 90 >gi|32472422|ref|NP_865416.1| DNA-binding protein HU [Rhodopirellula baltica SH 1] gi|32443658|emb|CAD73100.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1] gi|327538485|gb|EGF25149.1| DNA-binding protein HU [Rhodopirellula baltica WH47] Length = 139 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++V+ IS+E GL+++++ V F+ I ++ VR I++ +F F VK + +R Sbjct: 1 MTKKEIVRVISEELGLTQQETKEVVQRTFDSIVETLVREGRIELRNFGVFEVKPRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q+V + + VV FK ++++R+ Sbjct: 61 RNPKTGQQVDVPEKYVVTFKPGKVMEQRV 89 >gi|294497364|ref|YP_003561064.1| DNA-binding protein HU [Bacillus megaterium QM B1551] gi|295702737|ref|YP_003595812.1| DNA-binding protein HU [Bacillus megaterium DSM 319] gi|294347301|gb|ADE67630.1| DNA-binding protein HU [Bacillus megaterium QM B1551] gi|294800396|gb|ADF37462.1| DNA-binding protein HU [Bacillus megaterium DSM 319] Length = 90 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ + L++ D+++ V L I + GE I++ F TF V+++ +R G Sbjct: 1 MNKTDLVNAVATKSELTKADASKAVDALLETISSTLGEGEKIQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIPASKVPAFKAGKELKEAV 89 >gi|194289389|ref|YP_002005296.1| integration host factor subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193223224|emb|CAQ69229.1| integration host factor (IHF), alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 136 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 54/87 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + + GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 39 TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 98 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 99 GRNPKTGEVIPITARRVVTFHASQKLK 125 >gi|326692493|ref|ZP_08229498.1| nucleoid DNA-binding protein [Leuconostoc argentinum KCTC 3773] Length = 91 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV S++K GL++KD+T V +F I ++ GE +++ F F V+ + +R GRN Sbjct: 4 KQELVDSVAKATGLTKKDATAAVDAVFTSIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I +V FK LK+ + Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90 >gi|114562885|ref|YP_750398.1| integration host factor, alpha subunit [Shewanella frigidimarina NCIMB 400] gi|122299977|sp|Q083K5|IHFA_SHEFN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114334178|gb|ABI71560.1| integration host factor, alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 99 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI ++ GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ G+K Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEAANSGKK 99 >gi|260887856|ref|ZP_05899119.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185] gi|330838724|ref|YP_004413304.1| histone family protein DNA-binding protein [Selenomonas sputigena ATCC 35185] gi|260862362|gb|EEX76862.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185] gi|329746488|gb|AEB99844.1| histone family protein DNA-binding protein [Selenomonas sputigena ATCC 35185] Length = 92 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GLS+K + + + + I ++ V G+ +++ F TF VK + +R G Sbjct: 1 MNKTELVANVAEKAGLSKKVAEQALGAIIESIEEALVEGDKVQLIGFGTFEVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI R VFKA LK Sbjct: 61 RNPQTGKEIKIAASRNPVFKAGKALK 86 >gi|198284326|ref|YP_002220647.1| integration host factor subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|218668129|ref|YP_002426987.1| integration host factor, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248847|gb|ACH84440.1| integration host factor, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520342|gb|ACK80928.1| integration host factor, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 99 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V + + GL+++++ V LF+ I ++ +GE +K+S F F ++ K R Sbjct: 2 AVTKAEIVDMLFESMGLNKREAKGIVEALFDGIRENLAKGEEVKLSGFGNFTLRDKNPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T E+ I RRVV F S LK + Sbjct: 62 GRNPKTGVEITITARRVVTFHPSQKLKAYV 91 >gi|220930448|ref|YP_002507357.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] gi|220000776|gb|ACL77377.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] Length = 91 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ GL++KDS + + + + ++ G+ +++ F +F VKQ+ +R G Sbjct: 1 MNKSELIDKMAEKSGLTKKDSDKALNAMLESVEEALTGGDKVQLIGFGSFEVKQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + VFKA LK+ I Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMI 89 >gi|88607772|ref|YP_505798.1| integration host factor, alpha subunit [Anaplasma phagocytophilum HZ] gi|88598835|gb|ABD44305.1| integration host factor, alpha subunit [Anaplasma phagocytophilum HZ] Length = 106 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 57/96 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+T++ + I++E GLSR+DS V + +E+ S VR ++KISSF F V +K Sbjct: 9 MVQTLTKARIASMINREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKK 68 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T ++ ++ V F S +K+ I D Sbjct: 69 ERVGRNPKTLEKFVVEEHNTVTFCPSVTVKRFINGD 104 >gi|228997443|ref|ZP_04157062.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|229005088|ref|ZP_04162812.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228756190|gb|EEM05511.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228762319|gb|EEM11246.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] Length = 93 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 60/91 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K+++ V ++F+ I ++ G+ +++ F TF V+++ +R Sbjct: 2 KKMNKTELIKNVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAV 92 >gi|163747513|ref|ZP_02154863.1| integration host factor subunit beta [Oceanibulbus indolifex HEL-45] gi|161379191|gb|EDQ03610.1| integration host factor subunit beta [Oceanibulbus indolifex HEL-45] Length = 94 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F+EI + RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTVFDEITGAMSRGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + V FK +L+ R+ Sbjct: 61 GRNPRTGETVNVDEKHVPFFKTGKLLRDRL 90 >gi|113867363|ref|YP_725852.1| integration host factor subunit alpha [Ralstonia eutropha H16] gi|113526139|emb|CAJ92484.1| integration host factor alpha subunit [Ralstonia eutropha H16] Length = 128 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 54/87 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + + GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 31 TLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRP 90 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + + I RRVV F AS LK Sbjct: 91 GRNPKTGEVIPITARRVVTFHASQKLK 117 >gi|332967814|gb|EGK06913.1| integration host factor subunit alpha [Kingella kingae ATCC 23330] Length = 102 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K L + D+ V F EI + +GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNLGKNDAKEIVELFFEEIRTTLAQGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVAITARRVVTFHASQKLK 89 >gi|319651353|ref|ZP_08005482.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2] gi|317396884|gb|EFV77593.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2] Length = 90 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F+ I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEAGELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAV 89 >gi|254512178|ref|ZP_05124245.1| integration host factor, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221535889|gb|EEE38877.1| integration host factor, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 94 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ D+ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRL 90 >gi|126640672|ref|YP_001083656.1| integration host factor subunit alpha [Acinetobacter baumannii ATCC 17978] Length = 90 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 48/77 (62%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L+R+++ + V F+EI + + GE +K+S F F ++ K R GRN +T +E+ I RR Sbjct: 11 LNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGRNPKTGEEIPISARR 70 Query: 80 VVVFKASSILKKRIMDD 96 VV F+A ++R+ ++ Sbjct: 71 VVTFRAGQKFRQRVGNE 87 >gi|58584918|ref|YP_198491.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419234|gb|AAW71249.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 102 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ + + I++E GLS++DS + + +EI S V+ +KISSF TF +K+K R Sbjct: 10 TVTKATIAEDINQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKERP 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T+++V I R V F+ S ++KK I Sbjct: 70 GNVPNTSKKVVIQARNSVSFRPSKVIKKLI 99 >gi|229085283|ref|ZP_04217525.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|228698002|gb|EEL50745.1| DNA-binding protein HU [Bacillus cereus Rock3-44] Length = 90 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTADISQKDASVAVQSVFDAITNALQTGDKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|228918447|ref|ZP_04081894.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841197|gb|EEM86392.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 93 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K I+++ L++KD+ L + I ++ GE ++I F TF V++K +R G Sbjct: 4 MNKTELTKVIAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVREKSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|163752059|ref|ZP_02159267.1| integration host factor, alpha subunit [Shewanella benthica KT99] gi|161328059|gb|EDP99229.1| integration host factor, alpha subunit [Shewanella benthica KT99] Length = 98 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93 >gi|229543995|ref|ZP_04433054.1| histone family protein DNA-binding protein [Bacillus coagulans 36D1] gi|229325134|gb|EEN90810.1| histone family protein DNA-binding protein [Bacillus coagulans 36D1] Length = 90 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEATELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FK LK + Sbjct: 61 RNPQTGEEIDIAASKVPAFKPGKALKDAV 89 >gi|251794085|ref|YP_003008816.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] gi|247541711|gb|ACS98729.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] Length = 90 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ + GL+++D + E+ D+ G+ +++ F TF +++ RVG Sbjct: 1 MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALAGGDKVQLIGFGTFETRKRSGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FKA + LK I Sbjct: 61 RNPQTGKEISIPESKVPAFKAGNKLKDAI 89 >gi|126667906|ref|ZP_01738871.1| integration host factor subunit alpha [Marinobacter sp. ELB17] gi|126627566|gb|EAZ98198.1| integration host factor subunit alpha [Marinobacter sp. ELB17] Length = 100 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ V F+E+ + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYDELGLNKREAKEMVEAFFDEVRGALGHNEQVKLSGFGNFDLRDKKERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+ LK ++ Sbjct: 63 GRNPKTGEEIPICARRVVTFRPGQKLKAKV 92 >gi|193213379|ref|YP_001999332.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] gi|193086856|gb|ACF12132.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] Length = 100 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 56/99 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T T++DLV I++ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R RN +T ++V + P+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVGPKNVPTFKISKEFKHAVSESLKA 99 >gi|149916117|ref|ZP_01904639.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b] gi|149809972|gb|EDM69821.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b] Length = 94 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I++E L ++D R V T+FNEI ++ G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFNEITNAMAEGNRVELRGFGAFSVKRRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVYVEEKHVPFFKTGKLLRDRL 90 >gi|157375731|ref|YP_001474331.1| integration host factor, alpha subunit [Shewanella sediminis HAW-EB3] gi|157962289|ref|YP_001502323.1| integration host factor subunit alpha [Shewanella pealeana ATCC 700345] gi|167623744|ref|YP_001674038.1| integration host factor subunit alpha [Shewanella halifaxensis HAW-EB4] gi|212635793|ref|YP_002312318.1| integration host factor subunit alpha [Shewanella piezotolerans WP3] gi|189045030|sp|B0TQY4|IHFA_SHEHH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189045031|sp|A8H5F1|IHFA_SHEPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189045032|sp|A8FWI0|IHFA_SHESH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709753|sp|B8CR59|IHFA_SHEPW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157318105|gb|ABV37203.1| integration host factor, alpha subunit [Shewanella sediminis HAW-EB3] gi|157847289|gb|ABV87788.1| integration host factor, alpha subunit [Shewanella pealeana ATCC 700345] gi|167353766|gb|ABZ76379.1| integration host factor, alpha subunit [Shewanella halifaxensis HAW-EB4] gi|212557277|gb|ACJ29731.1| Integration host factor, alpha subunit [Shewanella piezotolerans WP3] Length = 98 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93 >gi|157692778|ref|YP_001487240.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032] gi|194016903|ref|ZP_03055516.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus pumilus ATCC 7061] gi|157681536|gb|ABV62680.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032] gi|194011509|gb|EDW21078.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus pumilus ATCC 7061] Length = 92 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAV 89 >gi|126727662|ref|ZP_01743494.1| integration host factor beta subunit [Rhodobacterales bacterium HTCC2150] gi|126703078|gb|EBA02179.1| integration host factor beta subunit [Rhodobacterales bacterium HTCC2150] Length = 94 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ E L ++D R V TLF EI ++ G+ +++ F F VKQ+ +R+ Sbjct: 1 MIRSELVQKIADENPQLFQRDVERIVNTLFEEIINALADGDRVELRGFGAFSVKQRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRSGESVEVEAKNVPFFKTGKLLRDRL 90 >gi|294141285|ref|YP_003557263.1| integration host factor subunit alpha [Shewanella violacea DSS12] gi|293327754|dbj|BAJ02485.1| integration host factor, alpha subunit [Shewanella violacea DSS12] Length = 98 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93 >gi|83313103|ref|YP_423367.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82947944|dbj|BAE52808.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 99 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 1/92 (1%) Query: 3 KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K++T+S+L+ +++ L ++D R VTT+F+EI + RG+ +++ F F VK++ Sbjct: 2 KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T + V +D + V FK L++++ Sbjct: 62 RVGRNPRTGETVSVDGKAVPFFKTGKQLREKL 93 >gi|89056076|ref|YP_511527.1| integration host factor subunit beta [Jannaschia sp. CCS1] gi|123400948|sp|Q28LB0|IHFB_JANSC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|88865625|gb|ABD56502.1| integration host factor beta subunit [Jannaschia sp. CCS1] Length = 95 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +S E L ++D R V ++F E+ D+ G+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKLSDENPHLYQRDVERIVNSIFEEVIDALAAGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FKA +L+ R+ Sbjct: 61 GRNPRTGESVSVEEKHVPFFKAGKLLRDRL 90 >gi|78187578|ref|YP_375621.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273] gi|78167480|gb|ABB24578.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273] Length = 102 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 55/98 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V LF I DS G I+I F +F+++ K Sbjct: 1 MGTTTTKADLVNVIAHRTGLTKNETETVVDALFESIIDSLKAGRRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V ++P+ V FK S K+ + + ++ Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLK 98 >gi|144899229|emb|CAM76093.1| Histone-like bacterial DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 95 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ K L ++D R VTT+F+EI ++ RG+ +++ F F VK + +R Sbjct: 1 MTKSELIARLAEKNPHLYQRDVERIVTTIFDEIAEALARGDRVELRGFGAFSVKSRDARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V +D + V FK L++R+ Sbjct: 61 GRNPRTGEQVAVDGKVVPFFKTGKQLRERL 90 >gi|317486374|ref|ZP_07945202.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316922363|gb|EFV43621.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 91 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK+++ + +S ++T V T + + DS + G ++I F +F VK+ GS G Sbjct: 1 MNKSELVKALADQANISLDEATLVVNTFVDSMKDSLLEGGRVEIRGFGSFKVKEYGSYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++P+R+ F+A LK+ + Sbjct: 61 RNPRTGEKVAVEPKRLPFFRAGKELKEYL 89 >gi|289522945|ref|ZP_06439799.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503488|gb|EFD24652.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 92 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SD+V ++K G+S+KD+ V + D+ +GE ++I F TF V+ + +R G Sbjct: 1 MTKSDIVSEVAKATGMSKKDAAVAVDAFIKSVVDALSKGEEVQIMGFGTFEVRNRAARKG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILK 90 RN Q +E ++I + V F+A +LK Sbjct: 61 RNPQNPEEIIEIPEKTVPAFRAGKMLK 87 >gi|30262382|ref|NP_844759.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42781470|ref|NP_978717.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47527672|ref|YP_019021.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47565733|ref|ZP_00236773.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49185222|ref|YP_028474.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49479951|ref|YP_036479.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143101|ref|YP_083727.1| DNA-binding protein HU [Bacillus cereus E33L] gi|65319674|ref|ZP_00392633.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis str. A2012] gi|118477778|ref|YP_894929.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|165870548|ref|ZP_02215202.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167633079|ref|ZP_02391405.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|167639624|ref|ZP_02397894.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|170686924|ref|ZP_02878143.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|170706668|ref|ZP_02897127.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|177649761|ref|ZP_02932763.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190565679|ref|ZP_03018599.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|196034013|ref|ZP_03101424.1| DNA-binding protein HU [Bacillus cereus W] gi|196039953|ref|ZP_03107256.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|196043718|ref|ZP_03110956.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|206973759|ref|ZP_03234677.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217959874|ref|YP_002338430.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218903511|ref|YP_002451345.1| DNA-binding protein HU [Bacillus cereus AH820] gi|222095963|ref|YP_002530020.1| DNA-binding protein hu [Bacillus cereus Q1] gi|225864340|ref|YP_002749718.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227814812|ref|YP_002814821.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228914965|ref|ZP_04078570.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927433|ref|ZP_04090489.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933667|ref|ZP_04096515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945981|ref|ZP_04108323.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985463|ref|ZP_04145620.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229030079|ref|ZP_04186143.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] gi|229091352|ref|ZP_04222567.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42] gi|229121924|ref|ZP_04251143.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201] gi|229139067|ref|ZP_04267644.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26] gi|229155954|ref|ZP_04284055.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342] gi|229184586|ref|ZP_04311788.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1] gi|229196589|ref|ZP_04323333.1| DNA-binding protein HU 1 [Bacillus cereus m1293] gi|229602245|ref|YP_002866714.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|254684954|ref|ZP_05148814.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066] gi|254722361|ref|ZP_05184149.1| DNA-binding protein HU [Bacillus anthracis str. A1055] gi|254737402|ref|ZP_05195106.1| DNA-binding protein HU [Bacillus anthracis str. Western North America USA6153] gi|254743414|ref|ZP_05201099.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B] gi|254751717|ref|ZP_05203754.1| DNA-binding protein HU [Bacillus anthracis str. Vollum] gi|254760236|ref|ZP_05212260.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94] gi|301053896|ref|YP_003792107.1| DNA-binding protein HU [Bacillus anthracis CI] gi|30257013|gb|AAP26245.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42737392|gb|AAS41325.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47502820|gb|AAT31496.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47557369|gb|EAL15697.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49179149|gb|AAT54525.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49331507|gb|AAT62153.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976570|gb|AAU18120.1| DNA-binding protein HU [Bacillus cereus E33L] gi|118417003|gb|ABK85422.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164713703|gb|EDR19226.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167512333|gb|EDR87709.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|167531891|gb|EDR94556.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|170128399|gb|EDS97267.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|170668975|gb|EDT19719.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|172084835|gb|EDT69893.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190563706|gb|EDV17671.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|195993693|gb|EDX57650.1| DNA-binding protein HU [Bacillus cereus W] gi|196026027|gb|EDX64696.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|196029212|gb|EDX67816.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|206747915|gb|EDZ59304.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217067193|gb|ACJ81443.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218535688|gb|ACK88086.1| DNA-binding protein HU [Bacillus cereus AH820] gi|221240021|gb|ACM12731.1| DNA-binding protein HU [Bacillus cereus Q1] gi|225788591|gb|ACO28808.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227004414|gb|ACP14157.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228586945|gb|EEK45019.1| DNA-binding protein HU 1 [Bacillus cereus m1293] gi|228598903|gb|EEK56521.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1] gi|228627561|gb|EEK84287.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342] gi|228644422|gb|EEL00677.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26] gi|228661573|gb|EEL17194.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201] gi|228691981|gb|EEL45723.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42] gi|228731249|gb|EEL82167.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] gi|228774228|gb|EEM22637.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813729|gb|EEM60008.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825994|gb|EEM71779.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832226|gb|EEM77807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844761|gb|EEM89807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266653|gb|ACQ48290.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|300376065|gb|ADK04969.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI] gi|324326392|gb|ADY21652.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus YBT-020] Length = 90 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I + G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQSADISQKDASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|94264784|ref|ZP_01288562.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93454773|gb|EAT05028.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 91 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++ E +++ D+ R V + + DS GE I I F TF V+++ ++ G Sbjct: 1 MNKGELVDKVAAEGKITKADADRLVKVVLGSMTDSLTNGEKITIPGFGTFEVRERAAKQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT V+I R+ V FK LK Sbjct: 61 RNPQTGATVEIPARKAVAFKPGKTLK 86 >gi|114798281|ref|YP_759882.1| putative integration host factor subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114738455|gb|ABI76580.1| putative integration host factor, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 98 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 57/94 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+++ +I +E G++R++S + + I + + + +K++ F F V+ K +R Sbjct: 4 RTLTRAEVTDAIVREVGVTRQESADLLDRTLDLIGAALEQEQEVKLARFGNFVVRSKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E I RRVV F+ S +LK ++ D Sbjct: 64 EGRNPKTGEEAPIAARRVVTFRPSPMLKSQVGGD 97 >gi|119775086|ref|YP_927826.1| integration host factor subunit alpha [Shewanella amazonensis SB2B] gi|166918523|sp|A1S700|IHFA_SHEAM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119767586|gb|ABM00157.1| integration host factor, alpha subunit [Shewanella amazonensis SB2B] Length = 98 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRSALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRV 91 >gi|302878220|ref|YP_003846784.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] gi|302581009|gb|ADL55020.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] Length = 101 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 54/96 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRVKLEQSEEVKLSGFGNFQLRDKQQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F S+ LK + + G Sbjct: 62 GRNPKTGEEIPISARRVVTFHPSAKLKNLVEKNYHG 97 >gi|241764521|ref|ZP_04762541.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241366057|gb|EER60661.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 106 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++TRSDLV+ ++ F L+ +D+ V TL + + D+ VRG I+I F +F V ++ R Sbjct: 5 SMTRSDLVEELAARFSQLTHRDAEFAVKTLLDAVGDALVRGHRIEIRGFGSFSVNRRPPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN ++ + V I +RV FK L++ + Sbjct: 65 MGRNPRSGEAVAIPEKRVPHFKPGKALREAV 95 >gi|320355221|ref|YP_004196560.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320123723|gb|ADW19269.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 93 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SDL+++++++ L KD+ V T+ + D+ G +++ F +F V++ G Sbjct: 1 MTKSDLIQALAEQMNLPVKDAKSIVDTIIGTMVDALAEGRGVELRGFGSFQVREYEGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++K+ P+++ FK L+ RI Sbjct: 61 RNPKTGEQIKVAPKKLPFFKVGKDLRDRI 89 >gi|116491040|ref|YP_810584.1| nucleoid protein Hbs [Oenococcus oeni PSU-1] gi|290890520|ref|ZP_06553595.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429] gi|116091765|gb|ABJ56919.1| bacterial nucleoid protein Hbs [Oenococcus oeni PSU-1] gi|290479916|gb|EFD88565.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429] Length = 91 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV S++K L++KD+T V +F+ I +GE +++ F F V+ + +R GRN Sbjct: 4 KQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+KI +V FK LK Sbjct: 64 PQTGAEIKIPASKVPAFKPGKALK 87 >gi|15924463|ref|NP_371997.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50] gi|15927054|ref|NP_374587.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315] gi|21283091|ref|NP_646179.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2] gi|27468078|ref|NP_764715.1| DNA-binding protein II [Staphylococcus epidermidis ATCC 12228] gi|49483660|ref|YP_040884.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA252] gi|49486312|ref|YP_043533.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MSSA476] gi|57650428|ref|YP_186357.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL] gi|57866986|ref|YP_188618.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A] gi|82751070|ref|YP_416811.1| DNA-binding protein II [Staphylococcus aureus RF122] gi|87160505|ref|YP_494059.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195207|ref|YP_500008.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267957|ref|YP_001246900.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus JH9] gi|150394021|ref|YP_001316696.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|151221594|ref|YP_001332416.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. Newman] gi|156979792|ref|YP_001442051.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3] gi|161509640|ref|YP_001575299.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140960|ref|ZP_03565453.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. JKD6009] gi|239636854|ref|ZP_04677853.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603] gi|242242752|ref|ZP_04797197.1| DNA-binding protein II [Staphylococcus epidermidis W23144] gi|242373780|ref|ZP_04819354.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1] gi|251810895|ref|ZP_04825368.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060] gi|253315980|ref|ZP_04839193.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732115|ref|ZP_04866280.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733280|ref|ZP_04867445.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus TCH130] gi|255006259|ref|ZP_05144860.2| DNA-binding protein HU [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425537|ref|ZP_05601962.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428196|ref|ZP_05604594.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus 65-1322] gi|257430826|ref|ZP_05607208.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433585|ref|ZP_05609943.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257436426|ref|ZP_05612473.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876] gi|257795472|ref|ZP_05644451.1| DNA-binding protein HU [Staphylococcus aureus A9781] gi|258413280|ref|ZP_05681556.1| DNA-binding protein HU [Staphylococcus aureus A9763] gi|258420613|ref|ZP_05683555.1| DNA-binding protein II [Staphylococcus aureus A9719] gi|258422496|ref|ZP_05685404.1| DNA-binding protein II [Staphylococcus aureus A9635] gi|258426808|ref|ZP_05688028.1| DNA-binding protein HU [Staphylococcus aureus A9299] gi|258444806|ref|ZP_05693135.1| DNA-binding protein II [Staphylococcus aureus A8115] gi|258447360|ref|ZP_05695504.1| DNA-binding protein HU [Staphylococcus aureus A6300] gi|258449755|ref|ZP_05697856.1| DNA-binding protein II [Staphylococcus aureus A6224] gi|258451131|ref|ZP_05699166.1| DNA-binding protein HU [Staphylococcus aureus A5948] gi|258454575|ref|ZP_05702539.1| histone family protein DNA-binding protein [Staphylococcus aureus A5937] gi|262048995|ref|ZP_06021874.1| DNA-binding protein II [Staphylococcus aureus D30] gi|262051642|ref|ZP_06023862.1| DNA-binding protein II [Staphylococcus aureus 930918-3] gi|269203098|ref|YP_003282367.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98] gi|282876095|ref|ZP_06284962.1| DNA-binding protein HU [Staphylococcus epidermidis SK135] gi|282892970|ref|ZP_06301205.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117] gi|282904055|ref|ZP_06311943.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160] gi|282905819|ref|ZP_06313674.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus Btn1260] gi|282908789|ref|ZP_06316607.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911050|ref|ZP_06318852.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282914263|ref|ZP_06322050.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899] gi|282916740|ref|ZP_06324498.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus D139] gi|282919186|ref|ZP_06326921.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus C427] gi|282921720|ref|ZP_06329437.1| DNA-binding protein HU [Staphylococcus aureus A9765] gi|282924370|ref|ZP_06332044.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101] gi|282928001|ref|ZP_06335610.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102] gi|283770545|ref|ZP_06343437.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus H19] gi|283958237|ref|ZP_06375688.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus A017934/97] gi|284024471|ref|ZP_06378869.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus 132] gi|293366560|ref|ZP_06613237.1| DNA-binding protein HU [Staphylococcus epidermidis M23864:W2(grey)] gi|293501288|ref|ZP_06667139.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus 58-424] gi|293510250|ref|ZP_06668958.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809] gi|293526845|ref|ZP_06671529.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M1015] gi|294848436|ref|ZP_06789182.1| DNA-binding protein HU [Staphylococcus aureus A9754] gi|295407222|ref|ZP_06817022.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819] gi|295427981|ref|ZP_06820613.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275330|ref|ZP_06857837.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MR1] gi|297207868|ref|ZP_06924301.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244646|ref|ZP_06928529.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796] gi|297591049|ref|ZP_06949687.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8] gi|300911953|ref|ZP_07129396.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TCH70] gi|304380944|ref|ZP_07363603.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694468|sp|Q5HFV0|DBH_STAAC RecName: Full=DNA-binding protein HU gi|81696318|sp|Q6G990|DBH_STAAS RecName: Full=DNA-binding protein HU gi|81696482|sp|Q6GGT8|DBH_STAAR RecName: Full=DNA-binding protein HU gi|81704412|sp|Q7A0U9|DBH_STAAW RecName: Full=DNA-binding protein HU gi|81705666|sp|Q7A5J1|DBH_STAAN RecName: Full=DNA-binding protein HU gi|81781570|sp|Q99U17|DBH_STAAM RecName: Full=DNA-binding protein HU gi|27315623|gb|AAO04757.1|AE016747_254 DNA-binding protein II [Staphylococcus epidermidis ATCC 12228] gi|13701272|dbj|BAB42566.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315] gi|14247244|dbj|BAB57635.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50] gi|21204531|dbj|BAB95227.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2] gi|49241789|emb|CAG40480.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA252] gi|49244755|emb|CAG43191.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MSSA476] gi|57284614|gb|AAW36708.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL] gi|57637644|gb|AAW54432.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A] gi|82656601|emb|CAI81024.1| DNA-binding protein II [Staphylococcus aureus RF122] gi|87126479|gb|ABD20993.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202765|gb|ABD30575.1| DNA-binding protein HU, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741026|gb|ABQ49324.1| bacterial nucleoid protein Hbs [Staphylococcus aureus subsp. aureus JH9] gi|149946473|gb|ABR52409.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|150374394|dbj|BAF67654.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. Newman] gi|156721927|dbj|BAF78344.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3] gi|160368449|gb|ABX29420.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|239597528|gb|EEQ80026.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603] gi|242233888|gb|EES36200.1| DNA-binding protein II [Staphylococcus epidermidis W23144] gi|242348517|gb|EES40119.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1] gi|251805575|gb|EES58232.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060] gi|253724162|gb|EES92891.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728820|gb|EES97549.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus TCH130] gi|257271994|gb|EEV04132.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275037|gb|EEV06524.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus 65-1322] gi|257278954|gb|EEV09573.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281678|gb|EEV11815.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257284708|gb|EEV14828.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876] gi|257789444|gb|EEV27784.1| DNA-binding protein HU [Staphylococcus aureus A9781] gi|257839844|gb|EEV64312.1| DNA-binding protein HU [Staphylococcus aureus A9763] gi|257843561|gb|EEV67968.1| DNA-binding protein II [Staphylococcus aureus A9719] gi|257847253|gb|EEV71259.1| DNA-binding protein II [Staphylococcus aureus A9635] gi|257849969|gb|EEV73927.1| DNA-binding protein HU [Staphylococcus aureus A9299] gi|257850299|gb|EEV74252.1| DNA-binding protein II [Staphylococcus aureus A8115] gi|257853551|gb|EEV76510.1| DNA-binding protein HU [Staphylococcus aureus A6300] gi|257857003|gb|EEV79903.1| DNA-binding protein II [Staphylococcus aureus A6224] gi|257861186|gb|EEV83999.1| DNA-binding protein HU [Staphylococcus aureus A5948] gi|257862958|gb|EEV85722.1| histone family protein DNA-binding protein [Staphylococcus aureus A5937] gi|259160483|gb|EEW45507.1| DNA-binding protein II [Staphylococcus aureus 930918-3] gi|259162927|gb|EEW47490.1| DNA-binding protein II [Staphylococcus aureus D30] gi|262075388|gb|ACY11361.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98] gi|269940964|emb|CBI49348.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TW20] gi|281295120|gb|EFA87647.1| DNA-binding protein HU [Staphylococcus epidermidis SK135] gi|282313757|gb|EFB44150.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101] gi|282316996|gb|EFB47370.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus C427] gi|282319227|gb|EFB49579.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus D139] gi|282322331|gb|EFB52655.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899] gi|282324745|gb|EFB55055.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327053|gb|EFB57348.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331111|gb|EFB60625.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus Btn1260] gi|282590298|gb|EFB95378.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102] gi|282593982|gb|EFB98971.1| DNA-binding protein HU [Staphylococcus aureus A9765] gi|282595673|gb|EFC00637.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160] gi|282764967|gb|EFC05092.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117] gi|283460692|gb|EFC07782.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus H19] gi|283470684|emb|CAQ49895.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus aureus subsp. aureus ST398] gi|283790386|gb|EFC29203.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus A017934/97] gi|285817153|gb|ADC37640.1| DNA-binding protein II HBsu [Staphylococcus aureus 04-02981] gi|290920403|gb|EFD97467.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M1015] gi|291096293|gb|EFE26554.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus 58-424] gi|291319329|gb|EFE59698.1| DNA-binding protein HU [Staphylococcus epidermidis M23864:W2(grey)] gi|291467194|gb|EFF09712.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809] gi|294824462|gb|EFG40885.1| DNA-binding protein HU [Staphylococcus aureus A9754] gi|294967935|gb|EFG43964.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819] gi|295128339|gb|EFG57973.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887442|gb|EFH26342.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178676|gb|EFH37922.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796] gi|297575935|gb|EFH94651.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8] gi|298694762|gb|ADI97984.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus ED133] gi|300886199|gb|EFK81401.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TCH70] gi|302333083|gb|ADL23276.1| histone family protein DNA-binding protein HU [Staphylococcus aureus subsp. aureus JKD6159] gi|302751303|gb|ADL65480.1| histone family protein DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340530|gb|EFM06465.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438124|gb|ADQ77195.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TCH60] gi|312829863|emb|CBX34705.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129189|gb|EFT85184.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus CGS03] gi|315195370|gb|EFU25757.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus CGS00] gi|315197780|gb|EFU28114.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus CGS01] gi|319400822|gb|EFV89041.1| DNA-binding protein HU 1 [Staphylococcus epidermidis FRI909] gi|320140355|gb|EFW32211.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA131] gi|320142718|gb|EFW34521.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA177] gi|323439525|gb|EGA97246.1| DNA-binding protein II [Staphylococcus aureus O11] gi|323442236|gb|EGA99867.1| DNA-binding protein II [Staphylococcus aureus O46] gi|329314149|gb|AEB88562.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus T0131] gi|329723176|gb|EGG59707.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus 21189] gi|329725443|gb|EGG61926.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU144] gi|329727498|gb|EGG63954.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus 21172] gi|329731360|gb|EGG67726.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus 21193] gi|329735377|gb|EGG71669.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU045] gi|329737246|gb|EGG73500.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU028] gi|330686039|gb|EGG97662.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU121] Length = 90 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I +S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V FKA LK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86 >gi|148244734|ref|YP_001219428.1| integration host factor, alpha subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326561|dbj|BAF61704.1| integration host factor, alpha subunit [Candidatus Vesicomyosocius okutanii HA] Length = 109 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 52/87 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +IT+ D+ + K ++ + F++I + GE++K+SSF F +++K SRV Sbjct: 2 SITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + V+I RRVVVFK+ LK Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLK 88 >gi|253576405|ref|ZP_04853735.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844298|gb|EES72316.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 90 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ LS+KD+T+ V +F+ I + G+ +++ F F V+++ +R G Sbjct: 1 MNKSDLIAQVAESTELSKKDATKAVDAVFDAISTALQNGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I ++ FK LK I Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGI 89 >gi|99080043|ref|YP_612197.1| integration host factor subunit beta [Ruegeria sp. TM1040] gi|259415365|ref|ZP_05739286.1| integration host factor, beta subunit [Silicibacter sp. TrichCH4B] gi|122984465|sp|Q1GK81|IHFB_SILST RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|99036323|gb|ABF62935.1| integration host factor beta subunit [Ruegeria sp. TM1040] gi|259348595|gb|EEW60357.1| integration host factor, beta subunit [Silicibacter sp. TrichCH4B] Length = 95 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ ++ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMSRGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|319786727|ref|YP_004146202.1| integration host factor subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317465239|gb|ADV26971.1| integration host factor, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 101 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + ++ G +K+S F F +++K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALQDGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERV 91 >gi|229086297|ref|ZP_04218475.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|228696992|gb|EEL49799.1| DNA-binding protein HU [Bacillus cereus Rock3-44] Length = 90 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V ++ + I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTAEISQKEATVVVQSVVDSITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89 >gi|170017043|ref|YP_001727962.1| nucleoid DNA-binding protein [Leuconostoc citreum KM20] gi|169803900|gb|ACA82518.1| Bacterial nucleoid DNA-binding protein [Leuconostoc citreum KM20] Length = 91 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV S++K GL++KD+T V +F I ++ GE +++ F F V+ + +R GRN Sbjct: 4 KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I +V FK LK+ + Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90 >gi|149919502|ref|ZP_01907982.1| integration host factor, alpha subunit [Plesiocystis pacifica SIR-1] gi|149819627|gb|EDM79054.1| integration host factor, alpha subunit [Plesiocystis pacifica SIR-1] Length = 94 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V + G S+K++ V +F+ + GE IKIS F F V+ K R Sbjct: 1 MTKADIVDKVCDRVGGFSKKEAADLVDQVFDTMKQVLETGEKIKISGFGNFVVRDKKPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT E+ I+ RRV+ FK S++LK Sbjct: 61 GRNPQTGDEITIEARRVLTFKPSNVLK 87 >gi|28378532|ref|NP_785424.1| DNA-binding protein II [Lactobacillus plantarum WCFS1] gi|254556746|ref|YP_003063163.1| DNA-binding protein II [Lactobacillus plantarum JDM1] gi|300767478|ref|ZP_07077390.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180690|ref|YP_003924818.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271368|emb|CAD64273.1| DNA-binding protein II [Lactobacillus plantarum WCFS1] gi|254045673|gb|ACT62466.1| DNA-binding protein II [Lactobacillus plantarum JDM1] gi|300495297|gb|EFK30453.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046181|gb|ADN98724.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum subsp. plantarum ST-III] Length = 91 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV +++ L++KD+T V +F I D+ +GE +++ F F V+++ +R GRN Sbjct: 4 KAELVNNVAAATNLTKKDATAAVDAVFASIQDTLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I +V FK LK + Sbjct: 64 PQTGDEIQIPASKVPAFKPGKALKDAV 90 >gi|116618389|ref|YP_818760.1| nucleoid protein Hbs [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431692|ref|ZP_03913722.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116097236|gb|ABJ62387.1| bacterial nucleoid protein Hbs [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352516|gb|EEJ42712.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 91 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV S++K GL++KD+T V +F I ++ GE +++ F F V+ + +R GRN Sbjct: 4 KQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I +V FK LK + Sbjct: 64 PQTGEEIQIAASKVPAFKPGKALKDAV 90 >gi|308066881|ref|YP_003868486.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus polymyxa E681] gi|310639519|ref|YP_003944277.1| DNA-binding protein hu-alpha (histone-like protein) [Paenibacillus polymyxa SC2] gi|305856160|gb|ADM67948.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus polymyxa E681] gi|309244469|gb|ADO54036.1| DNA-binding protein HU-alpha (Histone-like protein) [Paenibacillus polymyxa SC2] Length = 90 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +IS + GLS++D + + EI D+ G+ +++ F TF +++ SR G Sbjct: 1 MNKTDLINNISSKSGLSKRDVEAVLNGVLGEITDALASGDKVQLIGFGTFETRKRSSRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I V FKA + LK+ + Sbjct: 61 RNPQTGNTIEIPESTVPAFKAGNKLKEAV 89 >gi|330720848|gb|EGG99044.1| Integration host factor alpha subunit [gamma proteobacterium IMCC2047] Length = 100 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ + + + E GL+++++ V F E+ S + + +K+S F F ++ K R Sbjct: 3 ALTKAAIAEKLFDELGLNKREAKEIVEMFFGEVRQSLINNDQVKLSGFGNFGLRDKKERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK ++ D Sbjct: 63 GRNPKTGEDIPISARRVVTFRPGQKLKAKVED 94 >gi|297584429|ref|YP_003700209.1| histone family protein DNA-binding protein [Bacillus selenitireducens MLS10] gi|297142886|gb|ADH99643.1| histone family protein DNA-binding protein [Bacillus selenitireducens MLS10] Length = 90 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T V +F I DS +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAESADLSKKDATSAVDAVFEVITDSLKKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I V FK LK + Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAV 89 >gi|228476046|ref|ZP_04060754.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119] gi|314936394|ref|ZP_07843741.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis C80] gi|228269869|gb|EEK11349.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119] gi|313655013|gb|EFS18758.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis C80] Length = 90 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I +S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FKA LK Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALK 86 >gi|47565972|ref|ZP_00237010.1| DNA-binding protein HU [Bacillus cereus G9241] gi|47556889|gb|EAL15219.1| DNA-binding protein HU [Bacillus cereus G9241] Length = 90 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK K + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKAFKDAV 89 >gi|110681046|ref|YP_684053.1| integration host factor subunit beta [Roseobacter denitrificans OCh 114] gi|122972521|sp|Q161H6|IHFB_ROSDO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|109457162|gb|ABG33367.1| integration host factor, beta subunit [Roseobacter denitrificans OCh 114] Length = 94 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+F E+ + RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTGAMARGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|118586877|ref|ZP_01544311.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163] gi|118432709|gb|EAV39441.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163] Length = 107 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV S++K L++KD+T V +F+ I +GE +++ F F V+ + +R GRN Sbjct: 20 KQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGRN 79 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+KI +V FK LK Sbjct: 80 PQTGAEIKIPASKVPAFKPGKALK 103 >gi|77465590|ref|YP_355093.1| integration host factor subunit beta [Rhodobacter sphaeroides 2.4.1] gi|14194882|sp|Q9X4E2|IHFB_RHOS4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|4761124|gb|AAD29258.1|AF107093_3 integration host factor beta-subunit [Rhodobacter sphaeroides] gi|77390008|gb|ABA81192.1| Integration host factor beta-subunit [Rhodobacter sphaeroides 2.4.1] Length = 93 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L+++ R V T+F EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90 >gi|78223040|ref|YP_384787.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78194295|gb|ABB32062.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 93 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ E GL+ K + V+ +F+ + D+ VR E I+I F +F VK + G Sbjct: 1 MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++ P+++ FK LK+R+ Sbjct: 61 RNPKTGDPIEVKPKKLPFFKVGKELKERV 89 >gi|194336507|ref|YP_002018301.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308984|gb|ACF43684.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 102 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 55/98 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T+ DLV I+ GL++ ++ V +LF I DS G+ I+I F +F+++ K Sbjct: 1 MGTTTTKVDLVNVIAHRTGLTKNETESVVNSLFESIIDSLKAGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V ++P+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVEPKNVPAFKISKEFKLAVSESLK 98 >gi|146279885|ref|YP_001170043.1| integration host factor subunit beta [Rhodobacter sphaeroides ATCC 17025] gi|145558126|gb|ABP72738.1| hypothetical protein Rsph17025_3883 [Rhodobacter sphaeroides ATCC 17025] Length = 93 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L+++ R V T+F EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKSRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90 >gi|121605691|ref|YP_983020.1| integration host factor subunit beta [Polaromonas naphthalenivorans CJ2] gi|120594660|gb|ABM38099.1| integration host factor, beta subunit [Polaromonas naphthalenivorans CJ2] Length = 104 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ F L+ +D+ V TL + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEELAARFSQLTHRDAEHAVKTLLDAMSDTLVRGNRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|126464029|ref|YP_001045142.1| integration host factor subunit beta [Rhodobacter sphaeroides ATCC 17029] gi|221369597|ref|YP_002520693.1| integration host factor subunit beta [Rhodobacter sphaeroides KD131] gi|332561262|ref|ZP_08415580.1| integration host factor subunit beta [Rhodobacter sphaeroides WS8N] gi|166975885|sp|A3PPV4|IHFB_RHOS1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803538|sp|B9KU92|IHFB_RHOSK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|126105840|gb|ABN78370.1| integration host factor, beta subunit [Rhodobacter sphaeroides ATCC 17029] gi|221162649|gb|ACM03620.1| Integration host factor subunit beta [Rhodobacter sphaeroides KD131] gi|332275060|gb|EGJ20376.1| integration host factor subunit beta [Rhodobacter sphaeroides WS8N] Length = 93 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L+++ R V T+F EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90 >gi|83951656|ref|ZP_00960388.1| integration host factor, beta subunit [Roseovarius nubinhibens ISM] gi|83836662|gb|EAP75959.1| integration host factor, beta subunit [Roseovarius nubinhibens ISM] Length = 94 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D + V T+FNEI D+ +G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLFQRDVEKIVNTIFNEITDAMAKGNRVELRGFGAFSVKKRDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRL 90 >gi|171463686|ref|YP_001797799.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193224|gb|ACB44185.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 107 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L +++ + GL+++++ + F+ I S G +KIS F F ++ K +R Sbjct: 9 TVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGRSLEAGVEVKISGFGNFQLRNKSARP 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T Q + I RRVV F AS LK Sbjct: 69 GRNPKTGQMIPIAARRVVTFHASQKLK 95 >gi|291544066|emb|CBL17175.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. 18P13] Length = 91 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLVK++S++ +KD+ + T+ + I D+ +GE ++I F TF V+++G + Sbjct: 1 MTKADLVKAVSEKANCPKKDAEMAINTVIDCITDAVAQGEKVQIVGFGTFEVRERGEKKC 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T +E+ ++ VFKA LK Sbjct: 61 KNPRTGEEMITPAKKAPVFKAGKALK 86 >gi|127513142|ref|YP_001094339.1| integration host factor, alpha subunit [Shewanella loihica PV-4] gi|166918526|sp|A3QF32|IHFA_SHELP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|126638437|gb|ABO24080.1| integration host factor, alpha subunit [Shewanella loihica PV-4] Length = 98 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ + G+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAGK 98 >gi|121730318|ref|ZP_01682684.1| integration host factor, alpha subunit [Vibrio cholerae V52] gi|121627928|gb|EAX60500.1| integration host factor, alpha subunit [Vibrio cholerae V52] Length = 85 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASS 87 GRN +T +++ I RRVV F+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQ 85 >gi|104774450|ref|YP_619430.1| histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514550|ref|YP_813456.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300812638|ref|ZP_07093050.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|21633218|gb|AAM22481.1| HlbB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423531|emb|CAI98435.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093865|gb|ABJ59018.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300496368|gb|EFK31478.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325126261|gb|ADY85591.1| HlbB protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685672|gb|EGD27753.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 90 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +S++ S+K+S + V LF I ++ +GE +++ F TF V+++ +R G Sbjct: 1 MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I +V FK LK Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALK 86 >gi|152979083|ref|YP_001344712.1| integration host factor, alpha subunit [Actinobacillus succinogenes 130Z] gi|171704314|sp|A6VP80|IHFA_ACTSZ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|150840806|gb|ABR74777.1| integration host factor, alpha subunit [Actinobacillus succinogenes 130Z] Length = 98 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ ++ ++++++ L++ ++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVEIAENLTRKLELNKTEAKAMVESFFEEIRATLADGHNVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + + RRVVVF+ L+ R+ Sbjct: 62 GRNPKTGENIPVSARRVVVFRPGQKLRARV 91 >gi|228988924|ref|ZP_04148973.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770838|gb|EEM19354.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 90 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K +++ L++KD++ + + I ++ + GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKQVAENTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKAAV 89 >gi|258406020|ref|YP_003198762.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798247|gb|ACV69184.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 90 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++++ GL++ D+ R V + D+ V+ + ++ F TF V+++ +R G Sbjct: 1 MTKADLIGKVAEKSGLTKADAERAVNGFLESVEDTLVKEGKLTMTGFGTFSVEERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT QE+ I +VV F+ +LK Sbjct: 61 RNPQTGQEITIPASKVVKFRPGKLLK 86 >gi|228994795|ref|ZP_04154593.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228998490|ref|ZP_04158078.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|229005965|ref|ZP_04163656.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228755282|gb|EEM04636.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228761215|gb|EEM10173.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|228764903|gb|EEM13659.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] Length = 90 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 57/89 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V ++ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAV 89 >gi|225873248|ref|YP_002754707.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] gi|225792876|gb|ACO32966.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] Length = 107 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ ++K L+R+D V T+F+ + + G+ I+I F +F V+Q+ RVG Sbjct: 1 MTKADLVEELTKSGELTRRDGEVIVDTIFDSVIAALKSGDKIEIRGFGSFRVRQRNPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +V + ++V FK S L+ Sbjct: 61 RNPKTGAKVDVPAKKVPYFKPSKELR 86 >gi|328957353|ref|YP_004374739.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Carnobacterium sp. 17-4] gi|328673677|gb|AEB29723.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Carnobacterium sp. 17-4] Length = 91 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+++++ GL++KD+T V +F I S GE ++I F F V+ + +R GRN Sbjct: 4 KAELIENVATSTGLTKKDATSAVDAVFESIQTSLSEGEKVQIIGFGNFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I +V FK LK + Sbjct: 64 PQTGEEIQIAASKVPAFKPGKALKDAV 90 >gi|209516669|ref|ZP_03265522.1| integration host factor, alpha subunit [Burkholderia sp. H160] gi|295677042|ref|YP_003605566.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002] gi|209502944|gb|EEA02947.1| integration host factor, alpha subunit [Burkholderia sp. H160] gi|295436885|gb|ADG16055.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|255263556|ref|ZP_05342898.1| integration host factor, beta subunit [Thalassiobium sp. R2A62] gi|255105891|gb|EET48565.1| integration host factor, beta subunit [Thalassiobium sp. R2A62] Length = 93 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ E L ++D + V T+F+EI ++ G+ +++ F F VK++ +R Sbjct: 1 MIRSELVQKIADENPHLYQRDVEKIVNTIFDEITEAMADGDRVELRGFGAFSVKRRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FKA +L+ R+ Sbjct: 61 GRNPRTGESVHVEEKHVPFFKAGKLLRDRL 90 >gi|213649077|ref|ZP_03379130.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 92 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 43/76 (56%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 GLS++D+ V F EI + GE +K+S F F ++ K R GRN +T +++ I Sbjct: 9 LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 68 Query: 78 RRVVVFKASSILKKRI 93 RRVV F+ LK R+ Sbjct: 69 RRVVTFRPGQKLKSRV 84 >gi|134297994|ref|YP_001111490.1| histone family protein DNA-binding protein [Desulfotomaculum reducens MI-1] gi|134050694|gb|ABO48665.1| bacterial nucleoid protein Hbs [Desulfotomaculum reducens MI-1] Length = 95 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V+ + I ++ +G+ I++ F TF K + +R G Sbjct: 1 MNKAELISAVAEKTELSKKDAEKAVSAVLGSIEEALAKGDKIQLVGFGTFESKPRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I RV VFKA +LK + + Sbjct: 61 RNPQTGDTIQIPATRVPVFKAGKVLKDAVAN 91 >gi|332759234|gb|EGJ89543.1| integration host factor, alpha subunit [Shigella flexneri K-671] Length = 92 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 43/76 (56%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 GLS++D+ V F EI + GE +K+S F F ++ K R GRN +T +++ I Sbjct: 9 LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 68 Query: 78 RRVVVFKASSILKKRI 93 RRVV F+ LK R+ Sbjct: 69 RRVVTFRPGQKLKSRV 84 >gi|56964681|ref|YP_176412.1| DNA-binding protein HU [Bacillus clausii KSM-K16] gi|56910924|dbj|BAD65451.1| DNA-binding protein HU [Bacillus clausii KSM-K16] Length = 90 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD++ V ++F+ I +S +GE++++ F F V+++ +R G Sbjct: 1 MNKTELINALAERTQLSKKDASAAVNSMFDLISESLGKGESVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + FKA LK Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLK 86 >gi|297616318|ref|YP_003701477.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297144155|gb|ADI00912.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 90 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ + +++KD + + TLF I ++ G +++ F TF V+++ +R G Sbjct: 1 MNKTDLVAKVASKANMTKKDVEKVINTLFATIEEALKDGSKVQLVGFGTFEVRERQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I R+ FKA LK ++ Sbjct: 61 RNPQTGEEIEIPAARIPAFKAGKALKDAVV 90 >gi|24379067|ref|NP_721022.1| putative DNA-binding protein [Streptococcus mutans UA159] gi|290580914|ref|YP_003485306.1| putative DNA-binding protein [Streptococcus mutans NN2025] gi|14194638|sp|Q9XB21|DBH_STRMU RecName: Full=DNA-binding protein HU gi|5209332|gb|AAD40810.1|L40355_1 histone-like DNA-binding protein [Streptococcus mutans] gi|24376965|gb|AAN58328.1|AE014903_4 putative DNA-binding protein [Streptococcus mutans UA159] gi|254997813|dbj|BAH88414.1| putative DNA-binding protein [Streptococcus mutans NN2025] Length = 91 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGEEIKIKASKVPAFKAGKALK 87 >gi|114328684|ref|YP_745841.1| integration host factor subunit beta [Granulibacter bethesdensis CGDNIH1] gi|122326362|sp|Q0BQI4|IHFB_GRABC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114316858|gb|ABI62918.1| integration host factor beta-subunit [Granulibacter bethesdensis CGDNIH1] Length = 107 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ S+ + L+ +D V+T+F+EI ++ RG +++ F F +K++ +RV Sbjct: 1 MTKSELIASLKADNPHLTERDVETIVSTIFDEISNALARGARVELRGFGAFTIKRRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V +D + V FKA L++R+ + R Sbjct: 61 GRNPRTGETVSVDEKVVPFFKAGKELRERVNNGTR 95 >gi|186476310|ref|YP_001857780.1| integration host factor subunit alpha [Burkholderia phymatum STM815] gi|184192769|gb|ACC70734.1| integration host factor, alpha subunit [Burkholderia phymatum STM815] Length = 117 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 16 APTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 75 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 76 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 107 >gi|269468801|gb|EEZ80405.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium] Length = 90 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ GLS+ D+ R + I + +G+ ++I+ F +F V+ + +R G Sbjct: 1 MNKSELIDAIASTSGLSKADAGRALNATTGAITSAMAKGDGVQITGFGSFVVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK+ + Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89 >gi|325266870|ref|ZP_08133541.1| integration host factor subunit alpha [Kingella denitrificans ATCC 33394] gi|324981611|gb|EGC17252.1| integration host factor subunit alpha [Kingella denitrificans ATCC 33394] Length = 102 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +S+ ++ V F EI RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSSVSKTEAKEIVELFFEEIRSVLARGEEIKISGFGNFQLRNKPER 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGKEVAISARRVVTFHASQKLK 89 >gi|91784422|ref|YP_559628.1| integration host factor subunit alpha [Burkholderia xenovorans LB400] gi|296163121|ref|ZP_06845892.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1] gi|91688376|gb|ABE31576.1| Integration host factor, alpha subunit [Burkholderia xenovorans LB400] gi|295886623|gb|EFG66470.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1] Length = 136 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|170695990|ref|ZP_02887128.1| integration host factor, alpha subunit [Burkholderia graminis C4D1M] gi|307730396|ref|YP_003907620.1| integration host factor subunit alpha [Burkholderia sp. CCGE1003] gi|323526730|ref|YP_004228883.1| integration host factor subunit alpha [Burkholderia sp. CCGE1001] gi|170139070|gb|EDT07260.1| integration host factor, alpha subunit [Burkholderia graminis C4D1M] gi|307584931|gb|ADN58329.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1003] gi|323383732|gb|ADX55823.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1001] Length = 136 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|120598987|ref|YP_963561.1| integration host factor subunit alpha [Shewanella sp. W3-18-1] gi|126174101|ref|YP_001050250.1| integration host factor subunit alpha [Shewanella baltica OS155] gi|146292928|ref|YP_001183352.1| integration host factor subunit alpha [Shewanella putrefaciens CN-32] gi|153000427|ref|YP_001366108.1| integration host factor subunit alpha [Shewanella baltica OS185] gi|160875024|ref|YP_001554340.1| integration host factor subunit alpha [Shewanella baltica OS195] gi|217973584|ref|YP_002358335.1| integration host factor subunit alpha [Shewanella baltica OS223] gi|304411359|ref|ZP_07392973.1| integration host factor, alpha subunit [Shewanella baltica OS183] gi|307305319|ref|ZP_07585067.1| integration host factor, alpha subunit [Shewanella baltica BA175] gi|166918524|sp|A3D3R8|IHFA_SHEB5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918525|sp|A6WMK6|IHFA_SHEB8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918527|sp|A4Y6H0|IHFA_SHEPC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918529|sp|A1RK12|IHFA_SHESW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189045029|sp|A9KYZ2|IHFA_SHEB9 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803521|sp|B8E7F3|IHFA_SHEB2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120559080|gb|ABM25007.1| integration host factor, alpha subunit [Shewanella sp. W3-18-1] gi|125997306|gb|ABN61381.1| integration host factor, alpha subunit [Shewanella baltica OS155] gi|145564618|gb|ABP75553.1| integration host factor, alpha subunit [Shewanella putrefaciens CN-32] gi|151365045|gb|ABS08045.1| integration host factor, alpha subunit [Shewanella baltica OS185] gi|160860546|gb|ABX49080.1| integration host factor, alpha subunit [Shewanella baltica OS195] gi|217498719|gb|ACK46912.1| integration host factor, alpha subunit [Shewanella baltica OS223] gi|304350214|gb|EFM14618.1| integration host factor, alpha subunit [Shewanella baltica OS183] gi|306911622|gb|EFN42047.1| integration host factor, alpha subunit [Shewanella baltica BA175] gi|315267256|gb|ADT94109.1| integration host factor, alpha subunit [Shewanella baltica OS678] gi|319426543|gb|ADV54617.1| integration host factor, alpha subunit [Shewanella putrefaciens 200] Length = 98 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGMNKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|218777883|ref|YP_002429201.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218759267|gb|ACL01733.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 91 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++ G+S+ D+ + V F+ + D+ GE ++I +F VK+ S G Sbjct: 1 MNKLELVSTLKNRAGISKTDAAKIVQIFFDSMADALAEGERVEIRGLCSFFVKEYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VKI P+++ FK LK+R+ Sbjct: 61 RNPKTGEPVKISPKKLPFFKCGKELKERV 89 >gi|154502285|ref|ZP_02039345.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC 29149] gi|153797164|gb|EDN79584.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC 29149] Length = 92 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+K+I+++ G++++ + V + I D+ G+ ++ F +F V+++ R Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN Q E+ I+P + V FKA LK ++ Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKV 90 >gi|187924726|ref|YP_001896368.1| integration host factor subunit alpha [Burkholderia phytofirmans PsJN] gi|187715920|gb|ACD17144.1| integration host factor, alpha subunit [Burkholderia phytofirmans PsJN] Length = 136 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + + I RRVV F AS LK + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALV 126 >gi|70726439|ref|YP_253353.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435] gi|68447163|dbj|BAE04747.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435] Length = 90 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQQSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FKA LK Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALK 86 >gi|291530746|emb|CBK96331.1| bacterial nucleoid protein Hbs [Eubacterium siraeum 70/3] gi|291557742|emb|CBL34859.1| bacterial nucleoid protein Hbs [Eubacterium siraeum V10Sc8a] Length = 91 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ L++KD+ + ++ L I ++ +GE I++ F TF V+++ +R G Sbjct: 1 MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T ++KI +V FKA S LK Sbjct: 61 VNPRTGDKIKIAASKVPAFKAGSALK 86 >gi|228949548|ref|ZP_04111797.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810128|gb|EEM56500.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 90 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +S++ L++KD+T V + ++I S + E++++ F TF V+++ +R G Sbjct: 1 MNKTELINQVSEKTSLTKKDATASVQAVLDQITQSLQKDESVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + FKA LK+ + Sbjct: 61 RNPQTGEEMHIPGGKAPAFKAGKALKEAV 89 >gi|313124300|ref|YP_004034559.1| DNA-binding protein hu-alpha (histone-like protein) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280863|gb|ADQ61582.1| DNA-binding protein HU-alpha (Histone-like protein) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 90 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +S++ S+K+S + V LF I ++ +GE +++ F TF ++++ +R G Sbjct: 1 MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEIRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I +V FK LK Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALK 86 >gi|189424909|ref|YP_001952086.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421168|gb|ACD95566.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 93 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++ + + +S K + V +FN + ++ GE I+I +F VK+ G+ G Sbjct: 1 MNKSELIETFALQREISHKRAEEVVNMIFNSMSEAMTAGERIEIRGLGSFVVKEYGAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +++ P+++ FK LK+RI+D Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERILD 91 >gi|227551167|ref|ZP_03981216.1| DNA-binding protein II [Enterococcus faecium TX1330] gi|257877996|ref|ZP_05657649.1| DNA binding protein HU [Enterococcus faecium 1,230,933] gi|257881217|ref|ZP_05660870.1| DNA binding protein HU [Enterococcus faecium 1,231,502] gi|257884881|ref|ZP_05664534.1| DNA binding protein HU [Enterococcus faecium 1,231,501] gi|257887715|ref|ZP_05667368.1| DNA binding protein HU [Enterococcus faecium 1,141,733] gi|257889805|ref|ZP_05669458.1| DNA binding protein HU [Enterococcus faecium 1,231,410] gi|257892258|ref|ZP_05671911.1| DNA binding protein HU [Enterococcus faecium 1,231,408] gi|257896209|ref|ZP_05675862.1| DNA binding protein HU [Enterococcus faecium Com12] gi|257898847|ref|ZP_05678500.1| DNA binding protein HU [Enterococcus faecium Com15] gi|258616517|ref|ZP_05714287.1| DNA-binding protein HU [Enterococcus faecium DO] gi|260559047|ref|ZP_05831233.1| DNA binding protein HU [Enterococcus faecium C68] gi|261207581|ref|ZP_05922266.1| DNA binding protein HU [Enterococcus faecium TC 6] gi|289565093|ref|ZP_06445546.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF] gi|293379549|ref|ZP_06625691.1| DNA-binding protein HU [Enterococcus faecium PC4.1] gi|293556740|ref|ZP_06675303.1| DNA-binding protein HU [Enterococcus faecium E1039] gi|293563398|ref|ZP_06677847.1| DNA-binding protein HU 1 [Enterococcus faecium E1162] gi|293568056|ref|ZP_06679394.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Enterococcus faecium E1071] gi|293570250|ref|ZP_06681319.1| DNA-binding protein HU 1 [Enterococcus faecium E980] gi|294614845|ref|ZP_06694740.1| DNA-binding protein HU 1 [Enterococcus faecium E1636] gi|294618676|ref|ZP_06698210.1| DNA-binding protein HU 1 [Enterococcus faecium E1679] gi|294621938|ref|ZP_06701086.1| DNA-binding protein HU 1 [Enterococcus faecium U0317] gi|314938009|ref|ZP_07845319.1| DNA-binding protein HU [Enterococcus faecium TX0133a04] gi|314942005|ref|ZP_07848866.1| DNA-binding protein HU [Enterococcus faecium TX0133C] gi|314948742|ref|ZP_07852114.1| DNA-binding protein HU [Enterococcus faecium TX0082] gi|314951760|ref|ZP_07854799.1| DNA-binding protein HU [Enterococcus faecium TX0133A] gi|314991833|ref|ZP_07857291.1| DNA-binding protein HU [Enterococcus faecium TX0133B] gi|314995874|ref|ZP_07860961.1| DNA-binding protein HU [Enterococcus faecium TX0133a01] gi|227179729|gb|EEI60701.1| DNA-binding protein II [Enterococcus faecium TX1330] gi|257812224|gb|EEV40982.1| DNA binding protein HU [Enterococcus faecium 1,230,933] gi|257816875|gb|EEV44203.1| DNA binding protein HU [Enterococcus faecium 1,231,502] gi|257820719|gb|EEV47867.1| DNA binding protein HU [Enterococcus faecium 1,231,501] gi|257823769|gb|EEV50701.1| DNA binding protein HU [Enterococcus faecium 1,141,733] gi|257826165|gb|EEV52791.1| DNA binding protein HU [Enterococcus faecium 1,231,410] gi|257828637|gb|EEV55244.1| DNA binding protein HU [Enterococcus faecium 1,231,408] gi|257832774|gb|EEV59195.1| DNA binding protein HU [Enterococcus faecium Com12] gi|257836759|gb|EEV61833.1| DNA binding protein HU [Enterococcus faecium Com15] gi|260074804|gb|EEW63120.1| DNA binding protein HU [Enterococcus faecium C68] gi|260077964|gb|EEW65670.1| DNA binding protein HU [Enterococcus faecium TC 6] gi|289163100|gb|EFD10947.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF] gi|291589277|gb|EFF21087.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Enterococcus faecium E1071] gi|291592307|gb|EFF23921.1| DNA-binding protein HU 1 [Enterococcus faecium E1636] gi|291595059|gb|EFF26402.1| DNA-binding protein HU 1 [Enterococcus faecium E1679] gi|291598487|gb|EFF29556.1| DNA-binding protein HU 1 [Enterococcus faecium U0317] gi|291601072|gb|EFF31361.1| DNA-binding protein HU [Enterococcus faecium E1039] gi|291604659|gb|EFF34144.1| DNA-binding protein HU 1 [Enterococcus faecium E1162] gi|291609657|gb|EFF38918.1| DNA-binding protein HU 1 [Enterococcus faecium E980] gi|292641858|gb|EFF60026.1| DNA-binding protein HU [Enterococcus faecium PC4.1] gi|313589978|gb|EFR68823.1| DNA-binding protein HU [Enterococcus faecium TX0133a01] gi|313593644|gb|EFR72489.1| DNA-binding protein HU [Enterococcus faecium TX0133B] gi|313596039|gb|EFR74884.1| DNA-binding protein HU [Enterococcus faecium TX0133A] gi|313599257|gb|EFR78102.1| DNA-binding protein HU [Enterococcus faecium TX0133C] gi|313642584|gb|EFS07164.1| DNA-binding protein HU [Enterococcus faecium TX0133a04] gi|313644808|gb|EFS09388.1| DNA-binding protein HU [Enterococcus faecium TX0082] Length = 91 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 52/87 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++ ++ L++KD+T V +F+ I D+ GE +++ F F V+++ +R GRN Sbjct: 4 KAELIEKVASATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I +V FK LK + Sbjct: 64 PQTGEEIEIPASKVPAFKPGKALKDAV 90 >gi|167754539|ref|ZP_02426666.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402] gi|167705371|gb|EDS19950.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402] Length = 94 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 54/90 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M + + +LV+++SKE L++KD+ V T+FN I S V G+ + IS F TF V + Sbjct: 1 MEVVMNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +R G + +T +E+ I + V FK S+ LK Sbjct: 61 ARKGISPKTQEEMVIPASKTVTFKPSNRLK 90 >gi|59800752|ref|YP_207464.1| IfhA [Neisseria gonorrhoeae FA 1090] gi|194098031|ref|YP_002001079.1| integration host factor subunit alpha [Neisseria gonorrhoeae NCCP11945] gi|239998494|ref|ZP_04718418.1| integration host factor subunit alpha [Neisseria gonorrhoeae 35/02] gi|240013619|ref|ZP_04720532.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI18] gi|240016058|ref|ZP_04722598.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA6140] gi|240080200|ref|ZP_04724743.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA19] gi|240112413|ref|ZP_04726903.1| integration host factor subunit alpha [Neisseria gonorrhoeae MS11] gi|240115153|ref|ZP_04729215.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID18] gi|240117437|ref|ZP_04731499.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID1] gi|240120689|ref|ZP_04733651.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID24-1] gi|240122993|ref|ZP_04735949.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID332] gi|240125245|ref|ZP_04738131.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|240127699|ref|ZP_04740360.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|254493213|ref|ZP_05106384.1| integration host factor subunit alpha [Neisseria gonorrhoeae 1291] gi|260441029|ref|ZP_05794845.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI2] gi|268594353|ref|ZP_06128520.1| integration host factor subunit alpha [Neisseria gonorrhoeae 35/02] gi|268596349|ref|ZP_06130516.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA19] gi|268598476|ref|ZP_06132643.1| integration host factor subunit alpha [Neisseria gonorrhoeae MS11] gi|268600829|ref|ZP_06134996.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID18] gi|268603134|ref|ZP_06137301.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID1] gi|268681615|ref|ZP_06148477.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID332] gi|268683843|ref|ZP_06150705.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268686084|ref|ZP_06152946.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291044361|ref|ZP_06570070.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI2] gi|293399547|ref|ZP_06643700.1| integration host factor, alpha subunit [Neisseria gonorrhoeae F62] gi|75507418|sp|Q5F9T5|IHFA_NEIG1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709736|sp|B4RJZ4|IHFA_NEIG2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|59717647|gb|AAW89052.1| integration host factor alpha subunit [Neisseria gonorrhoeae FA 1090] gi|193933321|gb|ACF29145.1| IfhA [Neisseria gonorrhoeae NCCP11945] gi|226512253|gb|EEH61598.1| integration host factor subunit alpha [Neisseria gonorrhoeae 1291] gi|268547742|gb|EEZ43160.1| integration host factor subunit alpha [Neisseria gonorrhoeae 35/02] gi|268550137|gb|EEZ45156.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA19] gi|268582607|gb|EEZ47283.1| integration host factor subunit alpha [Neisseria gonorrhoeae MS11] gi|268584960|gb|EEZ49636.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID18] gi|268587265|gb|EEZ51941.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID1] gi|268621899|gb|EEZ54299.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID332] gi|268624127|gb|EEZ56527.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268626368|gb|EEZ58768.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291011255|gb|EFE03251.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI2] gi|291610116|gb|EFF39238.1| integration host factor, alpha subunit [Neisseria gonorrhoeae F62] gi|317163772|gb|ADV07313.1| integration host factor subunit alpha [Neisseria gonorrhoeae TCDC-NG08107] Length = 100 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +++ D+ V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89 >gi|218289480|ref|ZP_03493708.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|218240348|gb|EED07530.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] Length = 91 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ +++ GLS+KD + LF+ I + GE ++I F TF ++++ +R Sbjct: 1 MNKRDLIRKTAEQTGLSQKDCEAVINALFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V++ RRV FK + LK+ + Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAV 89 >gi|325571136|ref|ZP_08146708.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755] gi|325156221|gb|EGC68407.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755] Length = 103 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++ ++ L++KD+T V +F+ I D+ GE +++ F F V+ + R GRN Sbjct: 16 KAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGRN 75 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FK LK Sbjct: 76 PQTGEEIKIPASKVPAFKPGKALK 99 >gi|84515231|ref|ZP_01002593.1| integration host factor beta subunit [Loktanella vestfoldensis SKA53] gi|84510514|gb|EAQ06969.1| integration host factor beta subunit [Loktanella vestfoldensis SKA53] Length = 93 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D + V T+F+ I D+ +G +++ F F VK++ R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVEKIVNTIFDRITDAMAQGNRVELRGFGAFSVKKRDPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++D + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRL 90 >gi|15676627|ref|NP_273771.1| integration host factor, alpha subunit [Neisseria meningitidis MC58] gi|121634526|ref|YP_974771.1| putative integration host factor alpha-subunit [Neisseria meningitidis FAM18] gi|161869670|ref|YP_001598837.1| integration host factor subunit alpha [Neisseria meningitidis 053442] gi|218767850|ref|YP_002342362.1| integration host factor subunit alpha [Neisseria meningitidis Z2491] gi|254804610|ref|YP_003082831.1| integration host factor alpha-subunit [Neisseria meningitidis alpha14] gi|304387969|ref|ZP_07370141.1| integration host factor [Neisseria meningitidis ATCC 13091] gi|54037413|sp|P64393|IHFA_NEIMB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|54041368|sp|P64392|IHFA_NEIMA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918511|sp|A1KSZ1|IHFA_NEIMF RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044703|sp|A9M383|IHFA_NEIM0 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|7225956|gb|AAF41142.1| integration host factor, alpha subunit [Neisseria meningitidis MC58] gi|120866232|emb|CAM09972.1| putative integration host factor alpha-subunit [Neisseria meningitidis FAM18] gi|121051858|emb|CAM08164.1| putative integration host factor alpha-subunit [Neisseria meningitidis Z2491] gi|161595223|gb|ABX72883.1| integration host factor alpha-subunit [Neisseria meningitidis 053442] gi|254668152|emb|CBA04795.1| integration host factor alpha-subunit [Neisseria meningitidis alpha14] gi|254669798|emb|CBA04109.1| integration host factor alpha-subunit [Neisseria meningitidis alpha153] gi|261392903|emb|CAX50484.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria meningitidis 8013] gi|304337968|gb|EFM04106.1| integration host factor [Neisseria meningitidis ATCC 13091] gi|308388919|gb|ADO31239.1| putative integration host factor alpha-subunit [Neisseria meningitidis alpha710] gi|316983711|gb|EFV62692.1| integration host factor, alpha subunit [Neisseria meningitidis H44/76] gi|319410097|emb|CBY90433.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria meningitidis WUE 2594] gi|325127847|gb|EGC50754.1| integration host factor, alpha subunit [Neisseria meningitidis N1568] gi|325129888|gb|EGC52691.1| integration host factor, alpha subunit [Neisseria meningitidis OX99.30304] gi|325131817|gb|EGC54517.1| integration host factor, alpha subunit [Neisseria meningitidis M6190] gi|325133756|gb|EGC56412.1| integration host factor, alpha subunit [Neisseria meningitidis M13399] gi|325136047|gb|EGC58657.1| integration host factor, alpha subunit [Neisseria meningitidis M0579] gi|325137867|gb|EGC60442.1| integration host factor, alpha subunit [Neisseria meningitidis ES14902] gi|325140115|gb|EGC62644.1| integration host factor, alpha subunit [Neisseria meningitidis CU385] gi|325144067|gb|EGC66375.1| integration host factor, alpha subunit [Neisseria meningitidis M01-240013] gi|325197949|gb|ADY93405.1| integration host factor, alpha subunit [Neisseria meningitidis G2136] gi|325200586|gb|ADY96041.1| integration host factor, alpha subunit [Neisseria meningitidis H44/76] gi|325202474|gb|ADY97928.1| integration host factor, alpha subunit [Neisseria meningitidis M01-240149] gi|325203816|gb|ADY99269.1| integration host factor, alpha subunit [Neisseria meningitidis M01-240355] gi|325206428|gb|ADZ01881.1| integration host factor, alpha subunit [Neisseria meningitidis M04-240196] gi|325207774|gb|ADZ03226.1| integration host factor, alpha subunit [Neisseria meningitidis NZ-05/33] Length = 100 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +++ D+ V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89 >gi|332637851|ref|ZP_08416714.1| DNA-binding protein HU [Weissella cibaria KACC 11862] Length = 91 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV ++ GL++KD+T V +F I D+ +G+ +++ F F V+ + +R GRN Sbjct: 4 KQELVNDVATTTGLTKKDATAAVDAVFASIQDTLAKGDKVQLIGFGNFEVRTRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I ++ FK LK I Sbjct: 64 PQTGEEIEIAASKIPAFKPGKALKDAI 90 >gi|229017681|ref|ZP_04174572.1| DNA-binding protein HU 1 [Bacillus cereus AH1273] gi|229023899|ref|ZP_04180382.1| DNA-binding protein HU 1 [Bacillus cereus AH1272] gi|229173057|ref|ZP_04300608.1| DNA-binding protein HU 1 [Bacillus cereus MM3] gi|228610390|gb|EEK67661.1| DNA-binding protein HU 1 [Bacillus cereus MM3] gi|228737412|gb|EEL87924.1| DNA-binding protein HU 1 [Bacillus cereus AH1272] gi|228743607|gb|EEL93716.1| DNA-binding protein HU 1 [Bacillus cereus AH1273] Length = 90 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVK++++ +S+K+++ V ++F+ I + G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELVKNVAQSADISQKEASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAV 89 >gi|223043293|ref|ZP_03613340.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus capitis SK14] gi|314933655|ref|ZP_07841020.1| DNA-binding protein HU [Staphylococcus caprae C87] gi|222443504|gb|EEE49602.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus capitis SK14] gi|313653805|gb|EFS17562.1| DNA-binding protein HU [Staphylococcus caprae C87] Length = 90 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V FKA LK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86 >gi|229918705|ref|YP_002887351.1| histone family protein DNA-binding protein [Exiguobacterium sp. AT1b] gi|229470134|gb|ACQ71906.1| histone family protein DNA-binding protein [Exiguobacterium sp. AT1b] Length = 90 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 56/86 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++++ +S+K++T+ V F I ++ GE I++ F TF V+++ +R G Sbjct: 1 MNKTELIQAVTEKADVSKKEATKIVEATFESITEALQNGEKIQLIGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T ++++I +V FKA LK Sbjct: 61 RNPRTKEDIEIPASKVPAFKAGKALK 86 >gi|87312362|ref|ZP_01094454.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645] gi|87284927|gb|EAQ76869.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645] Length = 159 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 56/92 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ +T+ ++VK+IS+E GL++ + V FN I D+ V I++ +F F VK++ + Sbjct: 17 SRVVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAA 76 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R RN +T ++V + + VV FK +++R+ Sbjct: 77 RKARNPRTGEKVYVPSKFVVTFKPGKEMEERV 108 >gi|307709231|ref|ZP_07645690.1| DNA-binding protein [Streptococcus mitis SK564] gi|307620177|gb|EFN99294.1| DNA-binding protein [Streptococcus mitis SK564] Length = 91 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFSAVADYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87 >gi|194333137|ref|YP_002014997.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] gi|194310955|gb|ACF45350.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] Length = 94 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V + + + DS GE + + F TF V ++ R G Sbjct: 4 MSKAELVEKIASQAGLTKADAERAVNSFVSVVTDSLKAGEDVTLVGFGTFSVGERAERQG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I R+ V FK LK+ + Sbjct: 64 RNPQTGETITIAARKAVKFKPGKALKEEV 92 >gi|292490922|ref|YP_003526361.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291579517|gb|ADE13974.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 90 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S+++ L++ + R V ++ + D+ RG+ + I F TF V+ + +R G Sbjct: 1 MNKSELIESVAESGDLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGEEIKIKASKIPSFKAGKALKDAV 89 >gi|78224250|ref|YP_385997.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78195505|gb|ABB33272.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 97 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL I + +K++ V + + D+ +KIS F F V+QK R G Sbjct: 1 MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I R+V+ FK S ILK RI Sbjct: 61 RNPQTGETITISSRKVLTFKPSVILKNRI 89 >gi|294787803|ref|ZP_06753047.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC 29453] gi|294484096|gb|EFG31779.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC 29453] Length = 100 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +S+ D+ V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSSVSKNDAKEIVELFFEEIRTTLESGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89 >gi|259046865|ref|ZP_05737266.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175] gi|259036488|gb|EEW37743.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175] Length = 92 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 51/84 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++K+ L++KD + V LF I ++ GE +++ F F V+++ +R GRN Sbjct: 4 KAELVDRVAKKTQLTKKDVSATVEALFETIQEALKAGEKVQVIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIKASKVPAFKAGKALK 87 >gi|257867662|ref|ZP_05647315.1| DNA binding protein HU [Enterococcus casseliflavus EC30] gi|257869557|ref|ZP_05649210.1| DNA binding protein HU [Enterococcus gallinarum EG2] gi|257873990|ref|ZP_05653643.1| DNA binding protein HU [Enterococcus casseliflavus EC10] gi|257876569|ref|ZP_05656222.1| DNA binding protein HU [Enterococcus casseliflavus EC20] gi|257801745|gb|EEV30648.1| DNA binding protein HU [Enterococcus casseliflavus EC30] gi|257803721|gb|EEV32543.1| DNA binding protein HU [Enterococcus gallinarum EG2] gi|257808154|gb|EEV36976.1| DNA binding protein HU [Enterococcus casseliflavus EC10] gi|257810735|gb|EEV39555.1| DNA binding protein HU [Enterococcus casseliflavus EC20] Length = 91 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++ ++ L++KD+T V +F+ I D+ GE +++ F F V+ + R GRN Sbjct: 4 KAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E+KI +V FK LK + Sbjct: 64 PQTGEEIKIPASKVPAFKPGKALKDAV 90 >gi|226944153|ref|YP_002799226.1| integration host factor subunit alpha [Azotobacter vinelandii DJ] gi|226719080|gb|ACO78251.1| integration host factor, alpha subunit [Azotobacter vinelandii DJ] Length = 92 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84 >gi|114770171|ref|ZP_01447709.1| integration host factor beta subunit [alpha proteobacterium HTCC2255] gi|114549008|gb|EAU51891.1| integration host factor beta subunit [alpha proteobacterium HTCC2255] Length = 93 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ E L ++D R + T+F+EI D+ G +++ F +F VKQ+ +R Sbjct: 1 MIRSELVEKIAAENPHLFQRDIERIIGTVFDEIIDAMSNGNRVELRGFGSFSVKQREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ D Sbjct: 61 GRNPRTGETVDVEEKHVPFFKTGKLLRDRLND 92 >gi|253576875|ref|ZP_04854200.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843742|gb|EES71765.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 90 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +IS + GL++KD + EI D+ G+ +++ F TF +++ R G Sbjct: 1 MNKTDLINNISSKSGLTKKDVESVLNGFLGEITDALASGDKVQLIGFGTFETRKRSGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I V FKA + LK+ + Sbjct: 61 RNPQTGKTIEIPASTVPAFKAGNKLKEAV 89 >gi|170726421|ref|YP_001760447.1| integration host factor subunit alpha [Shewanella woodyi ATCC 51908] gi|226709754|sp|B1KRE5|IHFA_SHEWM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|169811768|gb|ACA86352.1| integration host factor, alpha subunit [Shewanella woodyi ATCC 51908] Length = 97 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEE 93 >gi|145298939|ref|YP_001141780.1| integration host factor alpha-subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142851711|gb|ABO90032.1| integration host factor alpha-subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 81 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 44/74 (59%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +S++++ V F EI + RGE +KIS F F +++K R GRN +T +++ I RR Sbjct: 1 MSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPGRNPKTGEDIPISARR 60 Query: 80 VVVFKASSILKKRI 93 VV F+ LK R+ Sbjct: 61 VVTFRPGQKLKARV 74 >gi|291460214|ref|ZP_06599604.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str. F0262] gi|291417161|gb|EFE90880.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str. F0262] Length = 95 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DLV +++K+ LS+KD+ V +F+ I +S + E +++ F TF V ++ +R G Sbjct: 6 MNRMDLVAAVAKKAELSKKDAEAAVKAVFDSISESLEKDEKVQLIGFGTFEVSKRAAREG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI + FKA LK RI Sbjct: 66 RNPRTGETMKIAESKAPRFKAGKALKDRI 94 >gi|117920310|ref|YP_869502.1| integration host factor subunit alpha [Shewanella sp. ANA-3] gi|166918528|sp|A0KWC7|IHFA_SHESA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|117612642|gb|ABK48096.1| integration host factor, alpha subunit [Shewanella sp. ANA-3] Length = 98 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|113970148|ref|YP_733941.1| integration host factor subunit alpha [Shewanella sp. MR-4] gi|114047662|ref|YP_738212.1| integration host factor subunit alpha [Shewanella sp. MR-7] gi|123029698|sp|Q0HJ83|IHFA_SHESM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123030574|sp|Q0HUQ0|IHFA_SHESR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|113884832|gb|ABI38884.1| integration host factor, alpha subunit [Shewanella sp. MR-4] gi|113889104|gb|ABI43155.1| integration host factor, alpha subunit [Shewanella sp. MR-7] Length = 98 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|78222088|ref|YP_383835.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78193343|gb|ABB31110.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 95 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ K L+RKDS V +F+ I D+ RGE ++I F +F V+++G+R Sbjct: 1 MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ VKI ++ FK L++R+ Sbjct: 61 ARNPKSGDVVKIPAKKTPFFKTGKELRERV 90 >gi|332525932|ref|ZP_08402073.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus JA2] gi|332109483|gb|EGJ10406.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus JA2] Length = 119 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + GL++++S V F + + V G+ +K+S F F++++K Sbjct: 17 TPTLTKAELADLLFDRLGLNKRESKDMVEAFFEIVHGTLVEGDDVKLSGFGNFNIRRKAP 76 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I R VV F AS LK + D Sbjct: 77 RPGRNPRTGELIPIKARNVVTFHASHKLKAIVQGD 111 >gi|225851130|ref|YP_002731364.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] gi|225645754|gb|ACO03940.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] Length = 90 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++ E G+++ + R V + ++ +GE + + F+VK++ +R G Sbjct: 1 MTKAELVAKVAAEAGVTKASAERCVNAFVKALTEALEKGERVALPGLGVFNVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I R+VV F A+ LK+++ Sbjct: 61 RNPRTGEEITIPARKVVTFHAAKALKEKV 89 >gi|261403920|ref|YP_003240161.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|329925507|ref|ZP_08280381.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5] gi|261280383|gb|ACX62354.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|328939790|gb|EGG36130.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5] Length = 90 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +IS + GL++KD + EI ++ G+ +++ F TF +++ R G Sbjct: 1 MNKTDLINNISGKSGLTKKDVENVLNGFLGEITEALANGDKVQLIGFGTFETRKRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I V FKA + LK+ + Sbjct: 61 RNPQTGNTIEIPESNVPAFKAGNKLKEAV 89 >gi|167750745|ref|ZP_02422872.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702] gi|167656180|gb|EDS00310.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702] Length = 105 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 55/86 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ L++KD+ + ++ L I ++ +GE I++ F TF V+++ +R G Sbjct: 15 MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 74 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T ++KI +V FKA S LK Sbjct: 75 VNPRTGDKIKIAASKVPAFKAGSALK 100 >gi|317128573|ref|YP_004094855.1| histone family protein DNA-binding protein [Bacillus cellulosilyticus DSM 2522] gi|315473521|gb|ADU30124.1| histone family protein DNA-binding protein [Bacillus cellulosilyticus DSM 2522] Length = 90 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+T V +F+ I S GE +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEKSDLSKKDATSAVDAVFDVITGSLQNGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I V FK LK + Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAV 89 >gi|24373647|ref|NP_717690.1| integration host factor, alpha subunit [Shewanella oneidensis MR-1] gi|81744784|sp|Q8EF98|IHFA_SHEON RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|24347991|gb|AAN55134.1|AE015650_4 integration host factor, alpha subunit [Shewanella oneidensis MR-1] Length = 98 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRV 91 >gi|241896283|ref|ZP_04783579.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313] gi|241870524|gb|EER74275.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313] Length = 91 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV ++ GL++KD+T V +F I ++ +GE +++ F F V+ + +R GRN Sbjct: 4 KQELVTDVATATGLTKKDATAAVDAVFASIQETLAKGEKVQLIGFGNFEVRSRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I ++ FK LK I Sbjct: 64 PQTGEEIEIAASKIPAFKPGKALKDAI 90 >gi|313499440|gb|ADR60806.1| IhfA [Pseudomonas putida BIRD-1] Length = 92 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84 >gi|296112017|ref|YP_003622399.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154] gi|300173423|ref|YP_003772589.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811] gi|295833549|gb|ADG41430.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154] gi|299887802|emb|CBL91770.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811] Length = 91 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV S++K GL++KD+T V +F I + GE +++ F F V+ + +R GRN Sbjct: 4 KQELVDSVAKATGLTKKDATASVDAVFASIEAALKNGEKVQLIGFGNFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I +V FK LK+ + Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90 >gi|85705352|ref|ZP_01036451.1| integration host factor, beta subunit [Roseovarius sp. 217] gi|85670225|gb|EAQ25087.1| integration host factor, beta subunit [Roseovarius sp. 217] Length = 93 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D R V T+FN I D+ G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFNAITDALAEGNRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVHVEEKYVPFFKTGKLLRDRL 90 >gi|23016137|ref|ZP_00055896.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 99 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 3 KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K++T+S+L+ +++ L ++D R VTT+F+EI + RG+ +++ F F VK++ Sbjct: 2 KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + V +D + V FK L++++ Sbjct: 62 RTGRNPRTGETVSVDGKAVPFFKTGKQLREKL 93 >gi|228949928|ref|ZP_04112122.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229060100|ref|ZP_04197470.1| DNA-binding protein HU [Bacillus cereus AH603] gi|229082875|ref|ZP_04215299.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228700413|gb|EEL52975.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228719140|gb|EEL70750.1| DNA-binding protein HU [Bacillus cereus AH603] gi|228809749|gb|EEM56176.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 93 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|218280828|ref|ZP_03487461.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989] gi|218217859|gb|EEC91397.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989] Length = 94 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 53/93 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS I + DL + +++EFG S+KD+T +V +F+ + D+ + + F F + ++ Sbjct: 1 MSNVINKKDLAEKLAEEFGCSKKDATAYVQFVFDTVADTLKDNGTVDVFGFGKFSISERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R G N T ++++I + V FKAS LK + Sbjct: 61 ARTGINPATKEKIEIAASKSVKFKASKALKDAV 93 >gi|198283417|ref|YP_002219738.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247938|gb|ACH83531.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 107 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ DL + + G + + +FV F + + + +K+S F F V+ K SR Sbjct: 2 TITKKDLANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T Q +I RRVV F AS++L+ + Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90 >gi|319892463|ref|YP_004149338.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius HKU10-03] gi|317162159|gb|ADV05702.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius HKU10-03] gi|323464434|gb|ADX76587.1| DNA-binding protein HU [Staphylococcus pseudintermedius ED99] Length = 90 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGLAVDAVFEAIQTSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V FKA LK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86 >gi|262276275|ref|ZP_06054084.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886] gi|262220083|gb|EEY71399.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886] Length = 93 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 48/88 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +S L+ I++ LS+ + R + L + DS GE + + F TF V+++ +R Sbjct: 2 KKVNKSQLIDKIAENADLSKAAAGRALDALIEAVSDSLKEGEQVALVGFGTFSVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT E+KI +V FKA LK Sbjct: 62 TGRNPQTGAEIKIAAAKVPGFKAGKALK 89 >gi|163793688|ref|ZP_02187662.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium BAL199] gi|159180799|gb|EDP65316.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium BAL199] Length = 92 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ L ++D R V+T+F+EI ++ RG+ +++ F F VKQ+ +RV Sbjct: 1 MTKSELIARLAEANPHLFQRDVERIVSTIFDEISNALARGDRVELRGFGAFSVKQREARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+ + V FK +L+ ++ Sbjct: 61 GRNPRTGEAVKVSSKFVPFFKTGKLLRDKL 90 >gi|283769425|ref|ZP_06342323.1| DNA-binding protein HU [Bulleidia extructa W1219] gi|283103950|gb|EFC05335.1| DNA-binding protein HU [Bulleidia extructa W1219] Length = 96 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T+ L + I+ E+ +S+KD+ V +F++I + +GE + I+ F F V +K Sbjct: 1 MAEQVTKKTLAEGIAAEYEVSKKDANELVNFVFDQITTAIKKGEEVSINGFGKFVVVEKA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +R G N T +++KI + FKAS LK Sbjct: 61 AREGLNPATGEKIKIKASKAPKFKASKTLK 90 >gi|188997447|ref|YP_001931698.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932514|gb|ACD67144.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 92 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ ++++ GL + ++ R V + ++ +GE I F+VK++ +R G Sbjct: 1 MTKSELIAKVAEKAGLKKSEAERAVNVAIEALVEALSKGERTAIPGLGVFNVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI R+VV F A+ LK+ + Sbjct: 61 RNPRTGKEIKIPKRKVVAFTAAKSLKEAV 89 >gi|294676676|ref|YP_003577291.1| integration host factor subunit beta [Rhodobacter capsulatus SB 1003] gi|547714|sp|Q06607|IHFB_RHOCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|294661|gb|AAA03551.1| HIP [Rhodobacter capsulatus] gi|294475496|gb|ADE84884.1| integration host factor, beta subunit [Rhodobacter capsulatus SB 1003] Length = 95 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ I++E L ++D + V T+F EI ++ RG+ +++ F F VK++ +R Sbjct: 1 MIRSELIAKIAEENPHLFQRDVEKIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V +D + V FK +L+ R+ Sbjct: 61 GRNPRTGTSVAVDEKHVPFFKTGKLLRDRL 90 >gi|310642570|ref|YP_003947328.1| DNA-binding protein hu-alpha (histone-like protein) [Paenibacillus polymyxa SC2] gi|309247520|gb|ADO57087.1| DNA-binding protein HU-alpha (Histone-like protein) [Paenibacillus polymyxa SC2] Length = 91 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +S+ LS+KD T+ + +F I + G+ +++ F F V+++ +R G Sbjct: 2 LNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I ++ FK LK I Sbjct: 62 RNPQTGEEIEIPASKIPAFKPGKALKDGI 90 >gi|15615918|ref|NP_244222.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] gi|14194648|sp|Q9K7K5|DBH2_BACHD RecName: Full=DNA-binding protein HU-1 gi|10175979|dbj|BAB07075.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] Length = 90 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ +S+KD+ V T+F+ I +S +G+++++ F F V+++ +R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + FKA LK Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLK 86 >gi|229170488|ref|ZP_04298139.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228612958|gb|EEK70132.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 90 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89 >gi|307704962|ref|ZP_07641850.1| DNA-binding protein HU [Streptococcus mitis SK597] gi|307621472|gb|EFO00521.1| DNA-binding protein HU [Streptococcus mitis SK597] Length = 91 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFSAVTDYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87 >gi|260574086|ref|ZP_05842091.1| integration host factor, beta subunit [Rhodobacter sp. SW2] gi|259023552|gb|EEW26843.1| integration host factor, beta subunit [Rhodobacter sp. SW2] Length = 93 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L+++ R V T+F EI ++ +G+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALAKGDRVELRGFGAFSVKARDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRL 90 >gi|256828814|ref|YP_003157542.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256577990|gb|ACU89126.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 91 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 60/95 (63%), Gaps = 4/95 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++++ +S +++ V + F+ + D+ +RG+ I+I F +F +KQ +G Sbjct: 1 MNKSELIQSLAEKIKISNDEASTIVDSFFDSMRDALLRGDRIEIRGFGSFKIKQYEGYIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RN +T + V++ P+++ FKA K ++D + G Sbjct: 61 RNPKTGESVQVKPKKMPFFKAG----KGLLDYLNG 91 >gi|190571140|ref|YP_001975498.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018544|ref|ZP_03334352.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357412|emb|CAQ54846.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995495|gb|EEB56135.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 99 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ + + I++E GLS++DS + + +EI S + +KISSF TF VK K R Sbjct: 7 TVTKATIAECINQEIGLSKEDSIAIIDDILDEIKTSLAKDGIVKISSFGTFLVKNKKERP 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G +T++ V I R+ + F+ S ++KK I Sbjct: 67 GNIPKTSERVVIKARKSISFRPSKMMKKLI 96 >gi|91787670|ref|YP_548622.1| integration host factor subunit beta [Polaromonas sp. JS666] gi|91696895|gb|ABE43724.1| integration host factor, beta subunit [Polaromonas sp. JS666] Length = 104 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ F L+ +D+ V T+ + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEELAARFSQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|84500257|ref|ZP_00998523.1| integration host factor beta subunit [Oceanicola batsensis HTCC2597] gi|84392191|gb|EAQ04459.1| integration host factor beta subunit [Oceanicola batsensis HTCC2597] Length = 94 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L ++D + V +F+EI ++ RG+ +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVEKIVNVIFDEIIEAMARGDRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRL 90 >gi|205373831|ref|ZP_03226633.1| hypothetical protein Bcoam_11505 [Bacillus coahuilensis m4-4] Length = 90 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEATELSKKDATKAVDAVFESIQNALANGDKVQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALK 86 >gi|117925344|ref|YP_865961.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117926106|ref|YP_866723.1| nucleoid protein Hbs [Magnetococcus sp. MC-1] gi|117609100|gb|ABK44555.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609862|gb|ABK45317.1| bacterial nucleoid protein Hbs [Magnetococcus sp. MC-1] Length = 91 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 ++L K++++ GLS+ ++ + + F + D+ G+ + IS F F + ++ +R GRN Sbjct: 4 TELKKAVAESSGLSQANADKAIKATFAAMTDALKGGDGVSISGFGAFQIDERAARTGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 +T QE+KI + V FKA +LK + Sbjct: 64 KTGQEIKIAASKNVKFKAGKVLKDAV 89 >gi|225849331|ref|YP_002729495.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644673|gb|ACN99723.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] Length = 94 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ ++++ GL + ++ R V + ++ +GE I F+V+++ +R G Sbjct: 1 MTKSELIAKVAEKAGLKKAEAERAVNAAIEAVVEALSKGERTAIPGLGVFNVRERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI R+VV F A+ LK+ + Sbjct: 61 RNPRTGKEIKIPARKVVAFTAAKSLKEAL 89 >gi|40062781|gb|AAR37675.1| DNA-binding protein HU [uncultured marine bacterium 439] Length = 90 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +I+ GL++ D+ R ++ I + G+ + I+ F +F V+ + +R G Sbjct: 1 MNKSDLVAAIADGSGLTKADAARALSATTGAISGALASGDKVSITGFGSFLVRSRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I +V FKA +LK+ + Sbjct: 61 RNPQTGATIHISASKVPAFKAGKLLKESV 89 >gi|258513573|ref|YP_003189795.1| histone family protein DNA-binding protein [Desulfotomaculum acetoxidans DSM 771] gi|257777278|gb|ACV61172.1| histone family protein DNA-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 96 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S+++E L++KD+ + V + I + +GE +++ F TF +K + +R G Sbjct: 1 MNKADLISSVAEEAELTKKDAEKAVNGVLKCIEMALAKGEKVQLVGFGTFDIKYRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I+ V VFKA L+ + Sbjct: 61 RNPQTGEEIDIEAANVPVFKAGKDLRDAV 89 >gi|323340746|ref|ZP_08080998.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644] gi|323091869|gb|EFZ34489.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644] Length = 91 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 52/84 (61%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L+++++++ GL++KD+T V +F I D +G+ +++ F F V+++ +R GRN Sbjct: 4 KAQLIETVAEKTGLTKKDATVAVDAVFGSIQDFLEKGDKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87 >gi|251796413|ref|YP_003011144.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] gi|247544039|gb|ACT01058.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] Length = 103 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 52/88 (59%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +++ LS+KD+T+ V +F I D+ G+ +++ F F V+++ +R Sbjct: 11 KQMNKTDLINKVAELSDLSKKDATKAVDAVFEAISDALQSGDKVQLVGFGNFEVRERQAR 70 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E+ I ++ FK LK Sbjct: 71 KGRNPQTGEEIDIAASKMPAFKPGKSLK 98 >gi|301629532|ref|XP_002943892.1| PREDICTED: integration host factor subunit beta-like [Xenopus (Silurana) tropicalis] Length = 99 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV++++ F L+ +D+ V + + + D+ VRG+ I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEALATRFRQLTHRDAEHAVRAILDAVGDALVRGQRIEIRGFGSFSITRRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V+I +RV FK L++ + Sbjct: 61 GRNPRSGEAVQIPEKRVPHFKPGKALRESV 90 >gi|188577593|ref|YP_001914522.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522045|gb|ACD59990.1| integration host factor, alpha subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 92 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + E GL+++++ FV F+ + D+ +G +K+S F F +++K R GRN +T Sbjct: 1 MAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I R VV F+ LK+R+ Sbjct: 61 GEEIPISARTVVTFRPGQKLKERV 84 >gi|94499185|ref|ZP_01305723.1| integration host factor alpha subunit [Oceanobacter sp. RED65] gi|94428817|gb|EAT13789.1| integration host factor alpha subunit [Oceanobacter sp. RED65] Length = 104 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + E GL+++++ V F EI E +K+S F F +++K R Sbjct: 3 AVTKADMAEKLFDELGLNKREAKEMVDIFFEEIRHCLTEKEQVKLSGFGNFDLREKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I R VV F+ LK ++ Sbjct: 63 GRNPKTGEEIPISARCVVTFRPGQKLKVQV 92 >gi|237733822|ref|ZP_04564303.1| DNA-binding protein HU [Mollicutes bacterium D7] gi|229383160|gb|EEO33251.1| DNA-binding protein HU [Coprobacillus sp. D7] Length = 90 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+++SKE L++KD+ V T+FN I S V G+ + IS F TF V + +R G Sbjct: 1 MNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 + +T +E+ I + V FK S+ LK Sbjct: 61 ISPKTQEEMVIPASKTVTFKPSNRLK 86 >gi|229177513|ref|ZP_04304892.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|228605960|gb|EEK63402.1| DNA-binding protein HU [Bacillus cereus 172560W] Length = 93 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|320353542|ref|YP_004194881.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320122044|gb|ADW17590.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 96 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 57/91 (62%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +TR +L S++++ G+S++++ V T+F + + V GE+IK+ F T V+ K R Sbjct: 4 KNVTRKELAISVNEKLGVSQRNAAEIVDTVFAIMKTTMVAGESIKLVQFGTLTVRDKSPR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I R++V F+ S L++R+ Sbjct: 64 RGRNPRTGESMTITKRQMVSFRPSKRLRERL 94 >gi|77165249|ref|YP_343774.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|254433630|ref|ZP_05047138.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|300114007|ref|YP_003760582.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] gi|76883563|gb|ABA58244.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|207089963|gb|EDZ67234.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|299539944|gb|ADJ28261.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] Length = 90 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ L++ + R V ++ + D+ RG+ + I F TF V+ + +R G Sbjct: 1 MNKSELIESVADAGNLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGEEIKIKASKMPSFKAGKALKDAV 89 >gi|16801114|ref|NP_471382.1| hypothetical protein lin2048 [Listeria innocua Clip11262] gi|16803973|ref|NP_465458.1| hypothetical protein lmo1934 [Listeria monocytogenes EGD-e] gi|46908167|ref|YP_014556.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str. F2365] gi|47094458|ref|ZP_00232138.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858] gi|47097574|ref|ZP_00235105.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854] gi|116873376|ref|YP_850157.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963914|ref|YP_002349592.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes HCC23] gi|224498616|ref|ZP_03666965.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes Finland 1988] gi|224501267|ref|ZP_03669574.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes FSL R2-561] gi|226224538|ref|YP_002758645.1| non-specific DNA-binding protein HU [Listeria monocytogenes Clip81459] gi|254825571|ref|ZP_05230572.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194] gi|254827181|ref|ZP_05231868.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165] gi|254831465|ref|ZP_05236120.1| non-specific DNA-binding protein HU [Listeria monocytogenes 10403S] gi|254852837|ref|ZP_05242185.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503] gi|254899369|ref|ZP_05259293.1| non-specific DNA-binding protein HU [Listeria monocytogenes J0161] gi|254912492|ref|ZP_05262504.1| DNA-binding protein HU [Listeria monocytogenes J2818] gi|254931895|ref|ZP_05265254.1| DNA-binding protein HU [Listeria monocytogenes HPB2262] gi|254936819|ref|ZP_05268516.1| DNA-binding protein HU [Listeria monocytogenes F6900] gi|254993467|ref|ZP_05275657.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL J2-064] gi|255522325|ref|ZP_05389562.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL J1-175] gi|284802379|ref|YP_003414244.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578] gi|284995521|ref|YP_003417289.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923] gi|289435283|ref|YP_003465155.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892094|ref|ZP_06555090.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071] gi|300763756|ref|ZP_07073753.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017] gi|315282964|ref|ZP_07871256.1| DNA-binding protein HU [Listeria marthii FSL S4-120] gi|315303883|ref|ZP_07874360.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596] gi|16411387|emb|CAD00012.1| hup [Listeria monocytogenes EGD-e] gi|16414549|emb|CAC97278.1| hup [Listeria innocua Clip11262] gi|46881437|gb|AAT04733.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str. F2365] gi|47014049|gb|EAL05051.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854] gi|47017173|gb|EAL08026.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858] gi|116742254|emb|CAK21378.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333184|gb|ACK38978.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes HCC23] gi|225877000|emb|CAS05709.1| Putative non-specific DNA-binding protein HU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599564|gb|EEW12889.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165] gi|258606166|gb|EEW18774.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503] gi|258609414|gb|EEW22022.1| DNA-binding protein HU [Listeria monocytogenes F6900] gi|284057941|gb|ADB68882.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578] gi|284060988|gb|ADB71927.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923] gi|289171527|emb|CBH28071.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290558217|gb|EFD91735.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071] gi|293583447|gb|EFF95479.1| DNA-binding protein HU [Listeria monocytogenes HPB2262] gi|293590474|gb|EFF98808.1| DNA-binding protein HU [Listeria monocytogenes J2818] gi|293594814|gb|EFG02575.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194] gi|300515492|gb|EFK42542.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017] gi|307571516|emb|CAR84695.1| DNA-binding protein [Listeria monocytogenes L99] gi|313607937|gb|EFR84075.1| DNA-binding protein HU [Listeria monocytogenes FSL F2-208] gi|313613391|gb|EFR87243.1| DNA-binding protein HU [Listeria marthii FSL S4-120] gi|313618142|gb|EFR90235.1| DNA-binding protein HU [Listeria innocua FSL S4-378] gi|313623144|gb|EFR93410.1| DNA-binding protein HU [Listeria innocua FSL J1-023] gi|313627747|gb|EFR96403.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596] gi|313632625|gb|EFR99610.1| DNA-binding protein HU [Listeria seeligeri FSL N1-067] gi|313637161|gb|EFS02693.1| DNA-binding protein HU [Listeria seeligeri FSL S4-171] gi|328466283|gb|EGF37440.1| DNA-binding protein HU [Listeria monocytogenes 1816] gi|328472777|gb|EGF43626.1| DNA-binding protein HU [Listeria monocytogenes 220] gi|332312374|gb|EGJ25469.1| DNA-binding protein HU 1 [Listeria monocytogenes str. Scott A] Length = 91 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 52/87 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DLV S+++ LS+KD+ + V +F I S +GE +++ F F V+++ +R GRN Sbjct: 4 KTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T +E+ I +V FK LK+ + Sbjct: 64 PRTKEEIDIPASKVPAFKPGKALKEAV 90 >gi|301061080|ref|ZP_07201877.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2] gi|300444874|gb|EFK08842.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2] Length = 95 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ L+ ++ ++ L +K +T V +LF I + V GE + IS F F VK K R Sbjct: 2 TITKNKLIDAVDEKTELPKKTATSAVESLFEIIKRTLVSGEDVLISGFGKFVVKDKKKRK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + +D RR+V FK S+ L+ ++ D Sbjct: 62 GRNPETGKGLILDARRIVSFKCSNKLRDKMND 93 >gi|149920506|ref|ZP_01908974.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1] gi|149818687|gb|EDM78132.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1] Length = 128 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L++ +++E GL++ + V T+F + + V G+ I+I F +F V+Q + G Sbjct: 1 MTKSELIERVAQESGLTKGRAEMVVNTIFESMTHALVAGDGIEIRGFGSFTVRQYKAYEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V + P+R+ FK L++R+ Sbjct: 61 RNPRTGDVVHVAPKRLPFFKVGKELRERV 89 >gi|294102069|ref|YP_003553927.1| histone family protein DNA-binding protein [Aminobacterium colombiense DSM 12261] gi|293617049|gb|ADE57203.1| histone family protein DNA-binding protein [Aminobacterium colombiense DSM 12261] Length = 91 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV +++K GL+++++ V + I +S +G+ +++ F TF V+++ +R G Sbjct: 1 MTKTDLVNAVAKATGLNKREAGAAVGAVLQAIENSLAKGDKVQLVGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN Q ++V KI ++V VF+ LK+++ Sbjct: 61 RNPQDPKKVIKIPAKKVPVFRPGKALKEKV 90 >gi|269468958|gb|EEZ80539.1| histone family protein DNA-binding [uncultured SUP05 cluster bacterium] Length = 91 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +I++ GL++ D+ R + I + G+ + I+ F +F V+ + +R G Sbjct: 1 MNKSDLVAAIAETSGLTKADAARALDATTGAITSALSGGDNVAITGFGSFLVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA +LK+ + Sbjct: 61 RNPQTGASIQIKASKVPAFKAGKLLKESV 89 >gi|315658244|ref|ZP_07911116.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590] gi|315496573|gb|EFU84896.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590] Length = 105 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K + V +F I S +GE +++ F F V+++ +R G Sbjct: 16 MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 75 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK + Sbjct: 76 RNPQTGKEIEIPASKVPAFKAGKALKDAV 104 >gi|229070625|ref|ZP_04203863.1| DNA-binding protein HU [Bacillus cereus F65185] gi|228712530|gb|EEL64467.1| DNA-binding protein HU [Bacillus cereus F65185] Length = 93 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + + ++ GE ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQALLDTVTNALANGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|40062481|gb|AAR37433.1| integration host factor, beta subunit, putative [uncultured marine bacterium 105] Length = 115 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ +S+ L++K S V T+F I + RGE I++ F +F ++Q+ R G Sbjct: 1 MTKAELVEEVSRVSELTKKHSEVIVDTVFKSIVTALHRGEKIELRGFGSFRLRQREPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V + P++V FK LK+ I Sbjct: 61 RNPKTGDRVDVPPKKVPYFKPGKDLKELI 89 >gi|260583468|ref|ZP_05851216.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633] gi|260158094|gb|EEW93162.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633] Length = 92 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 52/85 (61%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++K+ L++KD + V LF I ++ GE +++ F F V+++ +R GR Sbjct: 3 NKAELVDRVAKKTQLTKKDVSAAVDALFETIQEALQAGEKVQVIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N Q+ +E++I+ +V FKA LK Sbjct: 63 NPQSGEEIQIEASKVPAFKAGKALK 87 >gi|73662582|ref|YP_301363.1| nucleoid DNA-binding protein HU [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495097|dbj|BAE18418.1| bacterial nucleoid DNA-binding protein HU [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 90 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V FKA LK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86 >gi|238927161|ref|ZP_04658921.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531] gi|238884943|gb|EEQ48581.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531] Length = 100 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +LV +++++ L++KD+ + V LF I + G+ +++ F TF VK + +R Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKVQLIGFGTFEVKDRKARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT + ++I R VFKA LK Sbjct: 70 GRNPQTGKVIEIAASRNPVFKAGKALK 96 >gi|238898892|ref|YP_002924574.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466652|gb|ACQ68426.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 107 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 8/105 (7%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA----IKISSFATFHVKQK 59 TIT++D++ +S++FGL K+S + F EI + G+ +K S F F+++ K Sbjct: 2 TITKADILDDVSEKFGLEPKESKDLLELFFEEI--RCILGDEECSELKFSGFGNFNLRDK 59 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +R GRN +T ++V I RRVV F A LK + + + KC+K Sbjct: 60 KARPGRNPKTGEDVLIKKRRVVTFHAG--LKLKTLIENGNEKCSK 102 >gi|169350831|ref|ZP_02867769.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM 1552] gi|169292417|gb|EDS74550.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM 1552] Length = 91 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+ +++ D + +T+ + D+ V+GE + + F F ++++G R G Sbjct: 1 MNKTELVEAIASNTNMTKTDVDKVITSFIEVVTDALVKGEKVSLKGFGNFEIRERGERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + FKASS LK + Sbjct: 61 RNPRTGETMTISASKAPAFKASSALKNAV 89 >gi|39996845|ref|NP_952796.1| integration host factor subunit beta [Geobacter sulfurreducens PCA] gi|39983733|gb|AAR35123.1| integration host factor, beta subunit [Geobacter sulfurreducens PCA] gi|298505860|gb|ADI84583.1| integration host factor, beta subunit [Geobacter sulfurreducens KN400] Length = 92 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ E GL+ K + V +F+ + + +R E I+I F +F VK S G Sbjct: 1 MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ P+++ FK LK+R+ Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERV 89 >gi|330503833|ref|YP_004380702.1| integration host factor subunit alpha [Pseudomonas mendocina NK-01] gi|328918119|gb|AEB58950.1| integration host factor subunit alpha [Pseudomonas mendocina NK-01] Length = 92 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84 >gi|89099134|ref|ZP_01172013.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. NRRL B-14911] gi|89086264|gb|EAR65386.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. NRRL B-14911] Length = 90 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEAGELSKKDATKAVDAVFDTILNALKNGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGDEIEIAASKVPAFKPGKALKDAV 89 >gi|301156331|emb|CBW15802.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus parainfluenzae T3T1] Length = 99 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+ + + ++ L + ++ V F EI S G +K+S F F ++ K SR Sbjct: 3 TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + + RRVV FK L+ R+ Sbjct: 63 GRNPKTGESIPVSARRVVAFKPGQKLRARV 92 >gi|289550748|ref|YP_003471652.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01] gi|289180280|gb|ADC87525.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01] Length = 90 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K + V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FKA LK Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALK 86 >gi|83591632|ref|YP_425384.1| integration host factor, subunit beta [Rhodospirillum rubrum ATCC 11170] gi|123726093|sp|Q2RXP8|IHFB_RHORT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|83574546|gb|ABC21097.1| Integration host factor, beta subunit [Rhodospirillum rubrum ATCC 11170] Length = 100 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ I+ + L ++D R V+T+F+EI D+ RG+ +++ F F VK++ +R+ Sbjct: 1 MTKSELIARIAERNPHLYQRDVERIVSTIFDEIADALARGDRVELRGFGAFSVKRRDARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN +T + V +D + FK L++ Sbjct: 61 GRNPRTGETVDVDAKVAPYFKTGKQLRE 88 >gi|302876598|ref|YP_003845231.1| histone family protein DNA-binding protein [Clostridium cellulovorans 743B] gi|307687272|ref|ZP_07629718.1| histone family protein DNA-binding protein [Clostridium cellulovorans 743B] gi|302579455|gb|ADL53467.1| histone family protein DNA-binding protein [Clostridium cellulovorans 743B] Length = 91 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ SI+++ GL++KD+ + I ++ + E +++ F TF VK++ R G Sbjct: 1 MNKTELISSIAEKSGLTKKDAEAALKGFMESIQEALEKKEKVQLVGFGTFEVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V FKA LK R+ Sbjct: 61 RNPRTKEEIKIPASSVPSFKAGKELKDRV 89 >gi|227873321|ref|ZP_03991583.1| DNA-binding protein HU [Oribacterium sinus F0268] gi|227840836|gb|EEJ51204.1| DNA-binding protein HU [Oribacterium sinus F0268] Length = 90 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++K+ LS+KD+ V +F+ I ++ +G+ +++ F TF V ++ +R G Sbjct: 1 MNKVDLVSAVAKQAELSKKDAGLAVEAVFDAISEALEKGDKVQLIGFGTFDVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI + FKA LK R+ Sbjct: 61 RNPRTGETMKIAASKAPRFKAGKALKDRV 89 >gi|330810587|ref|YP_004355049.1| transcription factor, unclassified [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378695|gb|AEA70045.1| putative Transcription factor, unclassified [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 92 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARV 84 >gi|325578436|ref|ZP_08148571.1| integration host factor subunit alpha [Haemophilus parainfluenzae ATCC 33392] gi|325160172|gb|EGC72301.1| integration host factor subunit alpha [Haemophilus parainfluenzae ATCC 33392] Length = 110 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+ + + ++ L + ++ V F EI S G +K+S F F ++ K SR Sbjct: 14 TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + + RRVV FK L+ R+ Sbjct: 74 GRNPKTGESIPVSARRVVAFKPGQKLRARV 103 >gi|14194639|sp|Q9XB22|DBH_STRDO RecName: Full=DNA-binding protein HU gi|5209330|gb|AAD40809.1|L38959_1 histone-like DNA-binding protein [Streptococcus sobrinus] Length = 91 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V T+F+ I +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+KI +V FKA LK Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALK 87 >gi|253996481|ref|YP_003048545.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] gi|253983160|gb|ACT48018.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] Length = 90 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++ E G+++ D+ R + + N + ++ G+ + + F TF V +K +R G Sbjct: 1 MNKSELVAKVAAEAGVTQADTNRVLDAIINTVGEALKAGDNVALVGFGTFQVTKKAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T ++I R VFKA LK ++ Sbjct: 61 RNPSTGATIQIAARNAPVFKAGKTLKDKV 89 >gi|319789111|ref|YP_004150744.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] gi|317113613|gb|ADU96103.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] Length = 99 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 56/94 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+LV +I+++ G+ +KD+ + + ++ +GE ++I F TF +K++ RV Sbjct: 1 MTKSELVAAIAEKAGIRKKDAEAALNAFIAVVTEALKKGEKVEIRGFGTFLMKERAQRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T ++V + P+ V FK LK+ +++ Sbjct: 61 RNPKTGEKVTVPPKLVPAFKPGKDLKEATEQELK 94 >gi|290968877|ref|ZP_06560414.1| putative integration host factor, beta subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781173|gb|EFD93764.1| putative integration host factor, beta subunit [Megasphaera genomosp. type_1 str. 28L] Length = 92 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + L++KD+ + V +F I +S +G+ ++I F TF V+Q+ +R G Sbjct: 1 MNKTELIANVATKSDLTKKDAEKAVKAVFESISESLTKGDKVQIIGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN + N+ ++I+ + FKA LK Sbjct: 61 RNPRNNEPIQIEASKTPAFKAGKQLK 86 >gi|315661119|gb|ADU54569.1| histone-like DNA binding protein [Lactobacillus agilis] Length = 101 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 51/85 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L+++++++ GL++KD+T V +F I D GE +++ F F V+++ +R GR Sbjct: 13 NKAQLIENVAEKTGLTKKDATVAVDAVFGSIQDFLKDGEKVQLIGFGNFEVRERAARKGR 72 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT E++I +V FK LK Sbjct: 73 NPQTGAEIEIPASKVPAFKPGKALK 97 >gi|224476592|ref|YP_002634198.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus TM300] gi|222421199|emb|CAL28013.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus TM300] Length = 90 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQAELTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V FKA LK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALK 86 >gi|9630187|ref|NP_046614.1| histone-like prokaryotic DNA-binding protein family [Bacillus phage SPBc2] gi|16079164|ref|NP_389988.1| HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|221310012|ref|ZP_03591859.1| hypothetical protein Bsubs1_11596 [Bacillus subtilis subsp. subtilis str. 168] gi|221314334|ref|ZP_03596139.1| hypothetical protein BsubsN3_11517 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319256|ref|ZP_03600550.1| hypothetical protein BsubsJ_11443 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323532|ref|ZP_03604826.1| hypothetical protein BsubsS_11572 [Bacillus subtilis subsp. subtilis str. SMY] gi|56405013|sp|P68573|DBH2_BACSU RecName: Full=SPBc2 prophage-derived DNA-binding protein HU 2 gi|56405014|sp|P68574|DBH2_BPSPC RecName: Full=DNA-binding protein HU 2 gi|2634525|emb|CAB14023.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025540|gb|AAC13035.1| histone-like prokaryotic DNA-binding protein family [Bacillus phage SPbeta] Length = 92 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G+S+K+ V +F+ I ++ GE + I F TF V+++ +R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + FK + LK Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALK 86 >gi|284043331|ref|YP_003393671.1| histone family protein DNA-binding protein [Conexibacter woesei DSM 14684] gi|283947552|gb|ADB50296.1| histone family protein DNA-binding protein [Conexibacter woesei DSM 14684] Length = 91 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+ V ++ GLS+KD+ V + I ++ RG + S F FHV ++G+R G Sbjct: 1 MTKSEFVDQVAANSGLSKKDAGDAVDAVLQTIEEALKRGSEVTFSGFGKFHVAERGAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T ++++I RV F S LK+ + Sbjct: 61 RNPSTGEKIQIAASRVPRFTPGSGLKRAV 89 >gi|228925137|ref|ZP_04088247.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834476|gb|EEM80005.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 93 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K I+++ L++KD+ + + I ++ GE ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|308069517|ref|YP_003871122.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus polymyxa E681] gi|305858796|gb|ADM70584.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus polymyxa E681] Length = 90 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +S+ LS+KD T+ + +F I + G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINQVSESTELSKKDVTKAIDAVFEAISGALQSGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I ++ FK LK I Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGI 89 >gi|257455234|ref|ZP_05620469.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60] gi|257447196|gb|EEV22204.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60] Length = 90 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+K+ GLS+ ST + I ++ + + + F TF VK++ +R G Sbjct: 1 MNKSELVDSIAKKSGLSKAQSTEALNAFIATIGEAMKANDTVSLVGFGTFSVKERQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FKA LK Sbjct: 61 RNPQTKEEIQIPASKVPSFKAGKSLK 86 >gi|326943503|gb|AEA19396.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K I+++ L++KD+ + + I ++ GE ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89 >gi|311068519|ref|YP_003973442.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus atrophaeus 1942] gi|310869036|gb|ADP32511.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus atrophaeus 1942] Length = 91 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 50/71 (70%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+++K++T V +F + ++ +GE IK+S F TF V+++ +R G Sbjct: 1 MNKAELVGAVAEKLGVTKKEATPKVEAVFEVLAETLSKGEEIKVSGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKI 75 RN Q+ +E+ I Sbjct: 61 RNPQSGEEIDI 71 >gi|42519971|ref|NP_965886.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225677276|ref|ZP_03788259.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|42409708|gb|AAS13820.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590696|gb|EEH11940.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 101 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 49/80 (61%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I++E GLS++DS + + +EI S V+ +KISSF TF VK+K R G T+++V Sbjct: 20 INQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKV 79 Query: 74 KIDPRRVVVFKASSILKKRI 93 I R V F+ S I+KK I Sbjct: 80 MIQARNSVSFRPSKIIKKSI 99 >gi|241889358|ref|ZP_04776659.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379] gi|317496555|ref|ZP_07954904.1| DNA-binding protein [Gemella moribillum M424] gi|329767598|ref|ZP_08259119.1| DNA-binding protein HU [Gemella haemolysans M341] gi|329768861|ref|ZP_08260289.1| DNA-binding protein HU [Gemella sanguinis M325] gi|241863901|gb|EER68282.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379] gi|316913358|gb|EFV34855.1| DNA-binding protein [Gemella moribillum M424] gi|328837224|gb|EGF86861.1| DNA-binding protein HU [Gemella sanguinis M325] gi|328839225|gb|EGF88809.1| DNA-binding protein HU [Gemella haemolysans M341] Length = 90 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ GL +K +T + + ++ +GE I+I F F V+++ +R G Sbjct: 1 MNKSELISKVAEKSGLQKKQATAAIEAFVETVEETLAKGEKIQIIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QTN+ ++I +V FKA LK Sbjct: 61 RNPQTNEVIEIAASKVPAFKAGKALK 86 >gi|228899754|ref|ZP_04064001.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|228912379|ref|ZP_04076069.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228847234|gb|EEM92198.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228859868|gb|EEN04281.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 90 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +S++ L++K++T V + ++I S + E++++ F TF V+++ +R G Sbjct: 1 MNKTELINQVSEKTSLTKKEATASVQAILDQITQSLQKEESVQLIGFGTFEVRKRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FKA LK+ + Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKALKEAV 89 >gi|209965767|ref|YP_002298682.1| integration host factor, beta subunit [Rhodospirillum centenum SW] gi|226709803|sp|B6IUP4|IHFB_RHOCS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|209959233|gb|ACI99869.1| integration host factor, beta subunit [Rhodospirillum centenum SW] Length = 93 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ + L ++D + VTT+F+EI D+ RG+ +++ F F VK++ +R+ Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + + FK L++R+ D Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93 >gi|154498745|ref|ZP_02037123.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC 29799] gi|150272135|gb|EDM99339.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC 29799] Length = 91 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ + +++ GLS+KD+ + + I + G+ I++ F +F VK + +R+G Sbjct: 1 MNKAELINAAAEKAGLSKKDTENALNAALDVIAAALAEGDKIQLVGFGSFEVKSRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I +V VFK LK Sbjct: 61 RNPKTKEEITIPASKVPVFKPGKALK 86 >gi|148244747|ref|YP_001219441.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii HA] gi|146326574|dbj|BAF61717.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii HA] Length = 91 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV IS+ L++ DS R + + I + G+ + I+ F +F V+ + +R G Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I +V FKA +LK+ + Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESV 89 >gi|269468323|gb|EEZ79999.1| bacterial nucleoid DNA-binding protein [uncultured SUP05 cluster bacterium] Length = 95 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 49/87 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T+ D+V ++ + +S + F+ I + GE +K+S F F+++QK +R Sbjct: 2 SVTKKDIVDALVERLSMSHNQALVVTNEFFDSIKQTLALGEDVKLSGFGNFNIRQKSARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + V I R+VV FKA LK Sbjct: 62 GRNPKTGETVTISARKVVTFKAGPKLK 88 >gi|288575052|ref|ZP_06393409.1| histone family protein DNA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570793|gb|EFC92350.1| histone family protein DNA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 91 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+++++K LS+K + V+ + + ++ V+GE +++ F TF V+++ +R G Sbjct: 1 MTKTELIEAVAKSAELSKKAAGEAVSAVLESVEEALVKGEKVQLVGFGTFEVRERAARTG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93 RN Q ++ ++I ++V VF+ LK R+ Sbjct: 61 RNPQDPEKTIEIPAKKVPVFRPGKALKDRV 90 >gi|148260716|ref|YP_001234843.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5] gi|326403912|ref|YP_004283994.1| integration host factor beta subunit [Acidiphilium multivorum AIU301] gi|146402397|gb|ABQ30924.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5] gi|325050774|dbj|BAJ81112.1| integration host factor beta subunit [Acidiphilium multivorum AIU301] Length = 113 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ +++ + L+ D R VT +F+E+ + G +++ F F VKQ+ +R Sbjct: 1 MTRSELIAALAADHPHLTLADVERIVTAMFDEMTATLAAGGRVELRGFGAFSVKQRQARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + VK+D + V F+A L++ + M+ Sbjct: 61 GRNPRTGETVKVDEKTVPFFRAGRELREMVNAGMK 95 >gi|295424943|ref|ZP_06817655.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] gi|295065382|gb|EFG56278.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] Length = 94 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +++LVK I+++ + +KD+ + ++ + I D V+G +++ F TF V+ + +R Sbjct: 3 SVNKAELVKEIAEKTEMKKKDAEAVLESVISTIQDELVKGNKVQLIGFGTFEVRHRAARK 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E+ I +V FK LK+ + Sbjct: 63 GRNPQTGKEITIPATQVPAFKPGKALKESV 92 >gi|187729724|ref|YP_001837313.1| integration host factor subunit A-like protein [Acidithiobacillus caldus] gi|167782109|gb|ACA00180.1| integration host factor subunit A-like protein [Acidithiobacillus caldus] Length = 112 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL ++ G + ++ V F++I + +GE +K+S F F ++ K +R Sbjct: 2 TVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T V+I RRVV F AS LK Sbjct: 62 GRNPKTKVPVEITARRVVTFHASQSLK 88 >gi|303326346|ref|ZP_07356789.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] gi|302864262|gb|EFL87193.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] Length = 122 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59 M KT+T++D+V++I +E +R D V L EI +A++ + A+ IS F F K Sbjct: 28 MKKTLTKADIVEAIYEETDKNRVDVKNVVEQLL-EIMKTAIKKDRALLISGFGKFECYDK 86 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86 SR GRN QT++ + + PR+V+VF+ S Sbjct: 87 ASRKGRNPQTDETITLPPRKVMVFRLS 113 >gi|212702487|ref|ZP_03310615.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC 29098] gi|212674148|gb|EEB34631.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC 29098] Length = 91 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++++E L D++ V T + + DS + G+ I+I F +F +K+ G Sbjct: 1 MNKSELIKALAEESNLPFDDASLVVNTFIDAMKDSLIAGDRIEIRGFGSFKIKEYSGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + P+R+ F+A LK+ I Sbjct: 61 RNPKTGESVSVVPKRLPFFRAGKELKEYI 89 >gi|58699046|ref|ZP_00373888.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225629912|ref|YP_002726703.1| DNA-binding protein, HU family [Wolbachia sp. wRi] gi|58534440|gb|EAL58597.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225591893|gb|ACN94912.1| DNA-binding protein, HU family [Wolbachia sp. wRi] Length = 101 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 50/84 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 +V I++E GLS++DS + + +EI S + +KISSF TF VK+K R G T Sbjct: 16 IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +++V I R V F+ S I+KK I Sbjct: 76 SEKVMIQARNSVSFRPSKIIKKSI 99 >gi|297569210|ref|YP_003690554.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296925125|gb|ADH85935.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 97 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR DL K+I+++ G S++ + V +F+ + + + E IK+ F TF+V++K R Sbjct: 5 NLTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQ 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++I R ++ F+ S +++RI Sbjct: 65 GRNPRTGDPMEISKRSMISFRPSKSVRERI 94 >gi|169350609|ref|ZP_02867547.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552] gi|169292663|gb|EDS74796.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552] Length = 103 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++S+SKE L++KD+ V T+FN I S + G+ + IS F TF V + +R G Sbjct: 14 MNKKELIESVSKERNLTKKDAEILVDTVFNTITRSVIEGDKVLISGFGTFKVNDRKARKG 73 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 + +T +E+ I + V FK S+ LK Sbjct: 74 ISPKTQEEMIIPASKTVTFKPSNRLK 99 >gi|124494290|gb|ABN13185.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. subtilis str. 168] gi|124494310|gb|ABN13204.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494330|gb|ABN13223.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494350|gb|ABN13242.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. spizizenii str. W23] gi|124494370|gb|ABN13261.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494390|gb|ABN13280.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494410|gb|ABN13299.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494429|gb|ABN13317.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494450|gb|ABN13337.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. subtilis str. SMY] gi|124494470|gb|ABN13356.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494490|gb|ABN13375.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494510|gb|ABN13394.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494530|gb|ABN13413.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] Length = 86 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 51/83 (61%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 + ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R GRN QT Sbjct: 1 INAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRNPQTG 60 Query: 71 QEVKIDPRRVVVFKASSILKKRI 93 +E++I +V FK LK + Sbjct: 61 EEIEIPASKVPAFKPGKALKDAV 83 >gi|299821635|ref|ZP_07053523.1| DNA-binding protein HU [Listeria grayi DSM 20601] gi|299817300|gb|EFI84536.1| DNA-binding protein HU [Listeria grayi DSM 20601] Length = 112 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 52/87 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DLV ++++ LS+KD+ + V +F I S +GE +++ F F V+++ +R GRN Sbjct: 25 KTDLVNNVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGRN 84 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T +E+ I +V FK LK+ + Sbjct: 85 PRTKEEIDIPASKVPAFKPGKALKEAV 111 >gi|323701600|ref|ZP_08113272.1| histone family protein DNA-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533373|gb|EGB23240.1| histone family protein DNA-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 95 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ L++KD+ + V+ + + I ++ +G+ I++ F TF K + +R G Sbjct: 1 MNKAELISAVAEKTELTKKDAEKAVSAVLDSIQEAMAKGDKIQLVGFGTFESKARKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I RV VFK LK + + Sbjct: 61 RNPQTGETIQIPATRVPVFKPGKALKDAVAN 91 >gi|30468180|ref|NP_849067.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D] gi|19911236|dbj|BAB86889.1| histone-like protein of chloroplast [Cyanidioschyzon merolae] gi|30409280|dbj|BAC76229.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D] Length = 112 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 60/102 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GLS+K + + ++I V G+ +K+ F TF + + +R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN +T + + I R VVVF S LK+++ + M+ +++D Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQASQSQED 102 >gi|218848087|ref|YP_002454740.1| DNA-binding protein HU [Bacillus cereus G9842] gi|218546218|gb|ACK98611.1| DNA-binding protein HU [Bacillus cereus G9842] Length = 90 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+K +++ L++KD++ + + I ++ + GE +++ F TF V+++ +R G Sbjct: 1 MNKTALIKHVAEHTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V FKA LK Sbjct: 61 RNPQTGEEMHIAASKVPAFKAGKELK 86 >gi|328953615|ref|YP_004370949.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328453939|gb|AEB09768.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 98 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV+ + ++ LS+ ++ + V +F I + E + IS F + VK K R G Sbjct: 3 LTKASLVQVLFEKEILSKAEAAKVVDAVFRIIKQTLAEKEDVLISGFGKWLVKTKKERRG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT Q++ ID RRVV F+AS +L++ I Sbjct: 63 RNPQTGQDLTIDARRVVTFRASGVLRRLI 91 >gi|149180539|ref|ZP_01859043.1| non-specific DNA-binding protein [Bacillus sp. SG-1] gi|148851692|gb|EDL65838.1| non-specific DNA-binding protein [Bacillus sp. SG-1] Length = 91 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+ V + I D+ +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAESAELSKKDAENAVKAVLQNIEDTLAKGEKVQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + FK LK Sbjct: 61 RNPQTGEEMEIPATKQPAFKPGKALK 86 >gi|33602628|ref|NP_890188.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50] gi|33577070|emb|CAE35626.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50] Length = 93 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T+ DL+ ++S E G SR+D+ V L + I + + GE + F Q+ +R Sbjct: 2 SLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + V+I V F AS LK ++ Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQV 91 >gi|167469217|ref|ZP_02333921.1| integration host factor, alpha subunit [Yersinia pestis FV-1] Length = 98 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 43/76 (56%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 GLS++D+ V F E+ + GE +K+S F F ++ K R GRN +T +++ I Sbjct: 16 LGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 75 Query: 78 RRVVVFKASSILKKRI 93 RRVV F+ LK R+ Sbjct: 76 RRVVTFRPGQKLKSRV 91 >gi|89892939|ref|YP_516426.1| hypothetical protein DSY0193 [Desulfitobacterium hafniense Y51] gi|219666205|ref|YP_002456640.1| histone family protein DNA-binding protein [Desulfitobacterium hafniense DCB-2] gi|89332387|dbj|BAE81982.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536465|gb|ACL18204.1| histone family protein DNA-binding protein [Desulfitobacterium hafniense DCB-2] Length = 91 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ +S+KD+ + V +F I ++ + E +++ F TF VK + R G Sbjct: 1 MNKADLVAAVAEKAEVSKKDAEKAVNAVFASIEEALAKNEKVQLVGFGTFEVKDRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I +V FKA LK Sbjct: 61 RNPQTKEAIVIPASKVPGFKAGKALK 86 >gi|317120952|ref|YP_004100955.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM 12885] gi|315590932|gb|ADU50228.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM 12885] Length = 90 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+++ GL+RKDS + V I ++ +GE + + F TF V+ + +R G Sbjct: 1 MNKPELVNAIAEKTGLNRKDSEKAVNAFVESISEALAKGEKVSLVGFGTFEVRTRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T Q + I +V FK L++ Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLRE 87 >gi|218666994|ref|YP_002426010.1| integration host factor, alpha subunit, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519207|gb|ACK79793.1| integration host factor, alpha subunit, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 107 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+ + + G + + +FV F + + + +K+S F F V+ K SR Sbjct: 2 TITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T Q +I RRVV F AS++L+ + Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90 >gi|51894365|ref|YP_077056.1| non-specific DNA-binding protein [Symbiobacterium thermophilum IAM 14863] gi|51858054|dbj|BAD42212.1| non-specific DNA-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 89 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV S++++ GL++KD+ + + + I ++ +G+ + + F TF V+ + +R G Sbjct: 1 MNKQDLVASVAEKSGLTKKDAEKALNAVVESIKEALKKGDKVSLVGFGTFEVRNRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI +V F+ LK+ + Sbjct: 61 RNPQTGEPIKIPAGKVPAFRPGKELKESV 89 >gi|229193754|ref|ZP_04320694.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228589726|gb|EEK47605.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] Length = 93 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I ++ GE ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|254488430|ref|ZP_05101635.1| integration host factor, beta subunit [Roseobacter sp. GAI101] gi|214045299|gb|EEB85937.1| integration host factor, beta subunit [Roseobacter sp. GAI101] Length = 94 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F EI + G+ +++ F F VK++ SRV Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITSAMSAGDRVELRGFGAFSVKKRDSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|303327861|ref|ZP_07358301.1| integration host factor, beta subunit [Desulfovibrio sp. 3_1_syn3] gi|302862222|gb|EFL85156.1| integration host factor, beta subunit [Desulfovibrio sp. 3_1_syn3] Length = 91 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++++E + D++ V T + + S + GE I+I F +F +K+ G G Sbjct: 1 MNKSELIKALAEETNIPFDDASLVVNTFIDAMKKSLIAGERIEIRGFGSFKIKEYGGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + P+R+ F+A LK+ I Sbjct: 61 RNPKTGESVSVIPKRLPFFRAGKELKEFI 89 >gi|228911916|ref|ZP_04075657.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] gi|228924999|ref|ZP_04088129.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834662|gb|EEM80171.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228847725|gb|EEM92638.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] Length = 93 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ G+ ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|92114165|ref|YP_574093.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] gi|91797255|gb|ABE59394.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ + + + R + + + + DS +G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIEAIAASADIPKAAAGRALDAMVDTVTDSLKKGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT Q ++I +V FKA LK + Sbjct: 61 RNPQTGQTIEISAAKVPTFKAGKALKDSV 89 >gi|254501804|ref|ZP_05113955.1| integration host factor, beta subunit [Labrenzia alexandrii DFL-11] gi|222437875|gb|EEE44554.1| integration host factor, beta subunit [Labrenzia alexandrii DFL-11] Length = 99 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +EI ++ +RG+ +++ F F VK + +R+ Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T Q+V++D + V FK ++ R+ D Sbjct: 61 GRNPRTGQKVEVDEKHVPFFKTGKEMRIRLND 92 >gi|119505267|ref|ZP_01627342.1| integration host factor subunit alpha [marine gamma proteobacterium HTCC2080] gi|119458958|gb|EAW40058.1| integration host factor subunit alpha [marine gamma proteobacterium HTCC2080] Length = 104 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S++ + +E GL+++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKSEMADKLFEELGLNKREAKELVEQFFEEIRICLENNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVV F+ LK ++ Sbjct: 63 GRNPKTGEAIPISARRVVTFRPGQKLKAKV 92 >gi|56551140|ref|YP_161979.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761496|ref|ZP_04759584.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753209|ref|YP_003226102.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542714|gb|AAV88868.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374403|gb|EER63900.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552572|gb|ACV75518.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 91 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +DLV I+ GL++ D+ + V +F+ I D+AV GE I ++ F F VK +R G Sbjct: 1 MNSNDLVDRIASGQGLTKTDAKKLVDAVFSTIVDAAVAGEEIALNGFGKFKVKHSAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T QE++I + F ++ +K R+ Sbjct: 61 HNPATLQEIEIPASNRLTFTSAKAVKDRL 89 >gi|304405810|ref|ZP_07387468.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] gi|304345053|gb|EFM10889.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ + GL+++D + E+ D+ G+ +++ F TF +++ R G Sbjct: 1 MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALASGDKVQLIGFGTFETRKRSGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA + LK I Sbjct: 61 RNPQTGNPIEIAESKVPAFKAGNKLKDAI 89 >gi|194595686|gb|ACF77129.1| bacterial nucleoid DNA-binding protein [Azospirillum brasilense] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ GLS+ D+T+ V +F+ I DS GE +++ F TF V ++ + G Sbjct: 1 MNKNDLVAHVADAVGLSKTDATKAVDAIFDGIADSLKNGEEVRLVGFGTFAVSERAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +++ I + FK LK Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKTLK 86 >gi|315641242|ref|ZP_07896319.1| DNA-binding protein HU [Enterococcus italicus DSM 15952] gi|315483009|gb|EFU73528.1| DNA-binding protein HU [Enterococcus italicus DSM 15952] Length = 91 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L++ ++ L++KD+T V +F+ I ++ GE +++ F F V+ + R GRN Sbjct: 4 KAELIEKVAAATDLTKKDATLAVDAVFSSIQEALANGEKVQLIGFGNFEVRTRAERKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FK LK Sbjct: 64 PQTGEEIKIPASKVPAFKPGKALK 87 >gi|313902512|ref|ZP_07835913.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM 13965] gi|313467198|gb|EFR62711.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM 13965] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+++ GL++KDS R V I ++ RG+ + + F TF V+ + +R G Sbjct: 1 MNKPELVNAIAEKTGLNKKDSERAVNAFVESISEALARGDKVSLVGFGTFEVRTRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T Q + I +V FK L+ Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLR 86 >gi|206972956|ref|ZP_03233878.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] gi|206731840|gb|EDZ49040.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 1 MNKTKLTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89 >gi|228918712|ref|ZP_04082132.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840929|gb|EEM86151.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 93 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K I+++ L++KD+ + + I ++ G+ ++I F TF V+++ R G Sbjct: 4 MNKTELTKVIAEKAELTQKDAATATQAVLDTITNALANGDKVQILGFGTFEVRERSERTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKVPAFKAGKELKEAV 92 >gi|307544939|ref|YP_003897418.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581] gi|307216963|emb|CBV42233.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ + + ++R + + + + DS +G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIEAIAASADIPKAAASRALDAMVDAVADSLKKGDSVSLVGFGTFTVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I +V FKA LK + Sbjct: 61 RNPQTGEPIQISAAKVPSFKAGKALKDSV 89 >gi|332798190|ref|YP_004459689.1| histone family protein DNA-binding protein [Tepidanaerobacter sp. Re1] gi|332695925|gb|AEE90382.1| histone family protein DNA-binding protein [Tepidanaerobacter sp. Re1] Length = 91 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GL++KDS + + + ++ V+ + +++ F TF V+++ SR G Sbjct: 1 MNKAELITAMAEKSGLTKKDSEKALNAFIESVEEALVKRDKVQLVGFGTFEVRERSSRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + FKA LK I Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSI 89 >gi|172057810|ref|YP_001814270.1| histone family protein DNA-binding protein [Exiguobacterium sibiricum 255-15] gi|171990331|gb|ACB61253.1| histone family protein DNA-binding protein [Exiguobacterium sibiricum 255-15] Length = 90 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++++ ++ GL++KD T+ V + F I ++ GE +++ F F V+++ +R G Sbjct: 1 MNKTELIQAVVEKSGLTKKDVTKVVESTFESITETLQSGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T ++++I +V FK LK Sbjct: 61 RNPRTKEDIEIPASKVPAFKPGKALK 86 >gi|288553957|ref|YP_003425892.1| DNA-binding protein HU [Bacillus pseudofirmus OF4] gi|288545117|gb|ADC49000.1| DNA-binding protein HU, Hbsu-like protein [Bacillus pseudofirmus OF4] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ LS+KD+ V +F+ I ++ +GE +++ F F V+++ +R G Sbjct: 1 MNKTELINEVAERTQLSKKDAGNAVNEVFDVISETMSKGETVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + FKA LK Sbjct: 61 RNPQTGEEIDIPATKTPAFKAGKQLK 86 >gi|159899915|ref|YP_001546162.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] gi|159892954|gb|ABX06034.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 92 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDL+K+I+++ GLS+ + + V L I ++ G+ + ++ F TF V+++ +R G N Sbjct: 3 QSDLIKAIAEKSGLSQAQAGKAVNALLESITEALAAGDRVVLTGFGTFEVRERQARTGFN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + ++I R F A S LKK + + Sbjct: 63 PKTREPLEIPATRAPAFSAGSNLKKAVTE 91 >gi|332653755|ref|ZP_08419499.1| DNA-binding protein HU [Ruminococcaceae bacterium D16] gi|332516841|gb|EGJ46446.1| DNA-binding protein HU [Ruminococcaceae bacterium D16] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + LS+KD+ +T I ++ R E +++ F +F VK + +RVG Sbjct: 1 MNKTELINAVADKTQLSKKDAEAAITATVEAIAEALTREEKVQLVGFGSFEVKTRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T E++I + VFKA LK Sbjct: 61 RNPKTGTEIEIPQTKTPVFKAGKALK 86 >gi|255318959|ref|ZP_05360184.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82] gi|262378305|ref|ZP_06071462.1| integration host factor, beta subunit [Acinetobacter radioresistens SH164] gi|255303976|gb|EET83168.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82] gi|262299590|gb|EEY87502.1| integration host factor, beta subunit [Acinetobacter radioresistens SH164] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKQGDTVTLVGFGTFGVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSV 89 >gi|289450416|ref|YP_003475021.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184963|gb|ADC91388.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 R+DL+ SI+K L++K S + + N I D+ ++G+ + ++ F TF V+ + +R GRN Sbjct: 3 RNDLIASIAKAANLTKKSSEEALDAVLNTISDALIKGDKVILTGFGTFEVRARAARKGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T E+ I + FK LK+++ Sbjct: 63 PATKTEIMIPASKSPAFKPGKRLKEQV 89 >gi|225017256|ref|ZP_03706448.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum DSM 5476] gi|224950031|gb|EEG31240.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum DSM 5476] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SDL+ +++ + LS+KD+ + V ++ + I ++ V G+ +++ F TF V+++ +R G Sbjct: 1 MTKSDLINAVAAKAELSKKDAEKAVLSMIDAITEALVEGDKVQLVGFGTFEVRERKARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN + + I V FKA LK + Sbjct: 61 RNPLNGEPMHIPATTVPAFKAGKALKDAV 89 >gi|149376912|ref|ZP_01894667.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola DG893] gi|149358804|gb|EDM47273.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola DG893] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +++ + GLSR ++ +T ++I +A RGE + F TF+++ + +R GRN Sbjct: 3 KPELAAAVADKTGLSRDKASEVITAFTDQISAAAARGEDTTLIGFGTFNIRSREARDGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +KI + V FKA LK I Sbjct: 63 PQTGATIKIPASKTVGFKAGKALKDSI 89 >gi|85859096|ref|YP_461298.1| integration host factor beta-subunit [Syntrophus aciditrophicus SB] gi|85722187|gb|ABC77130.1| integration host factor beta-subunit [Syntrophus aciditrophicus SB] Length = 93 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++SK+ GL+ K + + LF + +G I+I F +F V+ + G Sbjct: 1 MNKSELIEALSKKEGLTEKKAIEVINLLFKGFTEELQKGGRIEIRGFGSFVVRNYNAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +K+ P+R+ FK LK+R+ Sbjct: 61 RNPKTGKNIKVSPKRLPFFKVGKELKERV 89 >gi|116623390|ref|YP_825546.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|116226552|gb|ABJ85261.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 112 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL++ +S+ ++RK+S V +F+ I S G+ I+I F +F +Q+ R+G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T V++ +++ FK S LK Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELK 86 >gi|88703270|ref|ZP_01100986.1| Histone-like bacterial DNA-binding protein [Congregibacter litoralis KT71] gi|88701984|gb|EAQ99087.1| Histone-like bacterial DNA-binding protein [Congregibacter litoralis KT71] Length = 115 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +I+ +++ D+ R + + + I D+ +G+ + + F TF VK + +R G Sbjct: 25 VNKSDLIDAIASAADINKSDAGRALDAVVDSITDTLKKGDQVSLVGFGTFSVKHRAARDG 84 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI V FKA LK + Sbjct: 85 RNPQTGETIKIKASNVPGFKAGKALKDAV 113 >gi|296112837|ref|YP_003626775.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4] gi|295920531|gb|ADG60882.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4] gi|326561078|gb|EGE11443.1| DNA-binding protein HU-beta [Moraxella catarrhalis 7169] gi|326561504|gb|EGE11848.1| DNA-binding protein HU-beta [Moraxella catarrhalis 46P47B1] gi|326565372|gb|EGE15550.1| DNA-binding protein HU-beta [Moraxella catarrhalis 12P80B1] gi|326566699|gb|EGE16838.1| DNA-binding protein HU-beta [Moraxella catarrhalis 103P14B1] gi|326567537|gb|EGE17652.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC1] gi|326569385|gb|EGE19445.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC8] gi|326571416|gb|EGE21431.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC7] gi|326575302|gb|EGE25230.1| DNA-binding protein HU-beta [Moraxella catarrhalis CO72] gi|326576613|gb|EGE26520.1| DNA-binding protein HU-beta [Moraxella catarrhalis 101P30B1] gi|326577520|gb|EGE27400.1| DNA-binding protein HU-beta [Moraxella catarrhalis O35E] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI++ GL+++ + + V + + RG+ + + F TF VK++ +R+G Sbjct: 1 MNKSELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I +V FKA +LK+ + Sbjct: 61 RNPKTGEAIQIAASKVPSFKAGKVLKESV 89 >gi|323705550|ref|ZP_08117124.1| histone family protein DNA-binding protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535027|gb|EGB24804.1| histone family protein DNA-binding protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 92 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + + ++ +G+ +++ F TF V+++ R G Sbjct: 2 VNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + VFKA LK Sbjct: 62 RNPQTKEEITIPASKAPVFKAGKALK 87 >gi|326204212|ref|ZP_08194072.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] gi|325985723|gb|EGD46559.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ SI+ + GL++K+S + + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNV 89 >gi|311696395|gb|ADP99268.1| histone-like bacterial DNA-binding protein [marine bacterium HP15] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+ GL+R+ ++ +T +++ +A RGE + + F TF+++ + +R GRN Sbjct: 3 KPELAAAIADRTGLTREKASEVITAFTDQVSAAASRGEDVTLIGFGTFNIRSREARDGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + ++I + V FKA LK I Sbjct: 63 PQTGETIRIPASKTVGFKAGKALKDEI 89 >gi|42519018|ref|NP_964948.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533] gi|227889872|ref|ZP_04007677.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200] gi|268319592|ref|YP_003293248.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785] gi|41583305|gb|AAS08914.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533] gi|227849736|gb|EEJ59822.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200] gi|262397967|emb|CAX66981.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785] gi|329667447|gb|AEB93395.1| DNA-binding protein HU [Lactobacillus johnsonii DPC 6026] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K+ V +FN I + +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVAAKTDLTKKEVAAAVDAIFNSIQEDLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87 >gi|220929825|ref|YP_002506734.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] gi|220000153|gb|ACL76754.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ SI+ + GL++K+S + + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNV 89 >gi|332702002|ref|ZP_08422090.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332552151|gb|EGJ49195.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 120 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 52/86 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++KT+T++++V I ++ L+R + V TL + + S R ++ IS F F K Sbjct: 21 LNKTLTKAEIVDYIYEKTDLNRAEIKAHVETLLDIMKQSIKRDHSLLISGFGKFEAYDKR 80 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN QTN+ + + PR+VVVF+ S Sbjct: 81 ARKGRNPQTNETITLPPRKVVVFRLS 106 >gi|229170534|ref|ZP_04298182.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228612883|gb|EEK70060.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 93 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + N I ++ E ++I F TF V+++ +R G Sbjct: 4 MNKAELTKMVAEKAELTQKDAAAATQAVLNAITNALANEEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|298529692|ref|ZP_07017095.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511128|gb|EFI35031.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++++ L++ DS + + + + D+ V+ + ++ F TF V+++ SR G Sbjct: 1 MTKADLVSKMAEKASLTKADSEKALNAFLDSVQDTLVKEGKLTLTGFGTFAVEERKSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +VV F+ ILK Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKILK 86 >gi|212704733|ref|ZP_03312861.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC 29098] gi|212671860|gb|EEB32343.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC 29098] Length = 95 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59 M KT+T++D+V+ I + +R D V L EI SA++ + A+ IS F F K Sbjct: 1 MKKTLTKADIVERIYESTDKNRVDVKNVVEKLL-EIMKSAIKKDNALLISGFGKFEAYDK 59 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86 SR GRN QT++ + + PR+VVVF+ S Sbjct: 60 ASRKGRNPQTDEAITLPPRKVVVFRLS 86 >gi|120554755|ref|YP_959106.1| histone family protein DNA-binding protein [Marinobacter aquaeolei VT8] gi|120324604|gb|ABM18919.1| bacterial nucleoid protein HU beta subunit [Marinobacter aquaeolei VT8] gi|311695073|gb|ADP97946.1| histone-like bacterial DNA-binding protein [marine bacterium HP15] Length = 90 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I++ +S+ + R + + N I + +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAESADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI +V FKA LK + Sbjct: 61 RNPQTGAEIKIPASKVPGFKAGKALKDAV 89 >gi|258542769|ref|YP_003188202.1| integration host factor DNA-binding subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633847|dbj|BAH99822.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636906|dbj|BAI02875.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639959|dbj|BAI05921.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643015|dbj|BAI08970.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646070|dbj|BAI12018.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649123|dbj|BAI15064.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652110|dbj|BAI18044.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655167|dbj|BAI21094.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 104 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ K L K++TR V +F I S G +++ F F VK++ R+ Sbjct: 1 MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN +T +VK+ + V FK L +R+ + G K ++ V Sbjct: 61 GRNPKTGVQVKVGKKLVPFFKTGKELHQRLNKPVAGSKRSRSSV 104 >gi|229074054|ref|ZP_04207110.1| DNA-binding protein HU [Bacillus cereus F65185] gi|229194173|ref|ZP_04321032.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228589314|gb|EEK47274.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228709071|gb|EEL61189.1| DNA-binding protein HU [Bacillus cereus F65185] Length = 93 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA K+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKEFKEAV 92 >gi|332529386|ref|ZP_08405347.1| integration host factor subunit beta [Hylemonella gracilis ATCC 19624] gi|332041184|gb|EGI77549.1| integration host factor subunit beta [Hylemonella gracilis ATCC 19624] Length = 100 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV++++ F L+ +D+ V + + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEALAARFEQLTHRDAESAVKAILDAMNDALVRGRRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|116515025|ref|YP_802654.1| hypothetical protein BCc_084 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285579|sp|Q057Y8|IHFA_BUCCC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|116256879|gb|ABJ90561.1| integration host factor alpha-subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 104 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + LS+++ V F E+ S GE++K+S F F+++ K R Sbjct: 2 VLTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I RRVVVFK L+ R+ Sbjct: 62 GRNPKTGEYIPISARRVVVFKPGQKLRSRV 91 >gi|225573957|ref|ZP_03782602.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM 10507] gi|225038795|gb|EEG49041.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM 10507] Length = 102 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ +++LV +++KE L++KD + + + + D +GE +++ F TF V ++ +R Sbjct: 10 TMNKTELVAAMAKETKLAKKDVEAVLKSFIDVVSDELKKGEKVQLVGFGTFEVSKRAARE 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT + +KI + FKA LK + ++ Sbjct: 70 GRNPQTGETMKISASKAPKFKAGKALKDLVNEE 102 >gi|168335347|ref|ZP_02693443.1| Bacterial nucleoid DNA-binding protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 93 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S++++ GL++KD+ + + + D G I++ F TF V + +RVG Sbjct: 1 MNKTELVASMAEKSGLTKKDTEKALKAFEESVMDELKSGGKIQLVGFGTFEVTNRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +TN+E+ I V FKA LK Sbjct: 61 RNPKTNEEIHIPESNVPKFKAGKALK 86 >gi|156564019|ref|YP_001429759.1| DNA-binding HU protein [Bacillus phage 0305phi8-36] gi|154622716|gb|ABS83596.1| DNA-binding HU protein [Bacillus phage 0305phi8-36] Length = 111 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ +S+KD+T+ V +F I ++ G +++ F TF + + +R G Sbjct: 22 MNKTELINHVAETAEISKKDATKAVDAVFGGITNALAEGNKVQLIGFGTFETRDRAARKG 81 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FKA LK Sbjct: 82 RNPQTGEEIEIAATKVPAFKAGKELK 107 >gi|117924551|ref|YP_865168.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117926183|ref|YP_866800.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117608307|gb|ABK43762.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609939|gb|ABK45394.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 49/83 (59%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 ++L K+++++ +S+ D+ + + F I D+ GE +++ F TF + ++ +R GRN Sbjct: 4 AELKKAVAEKAEMSQSDANQVIKACFEAISDALGNGETVQLPGFGTFSLGERAARTGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT E++I + V FKA LK Sbjct: 64 QTGAEIQIAASKSVKFKAGKALK 86 >gi|108759553|ref|YP_633781.1| integration host factor subunit beta [Myxococcus xanthus DK 1622] gi|108463433|gb|ABF88618.1| integration host factor, beta subunit [Myxococcus xanthus DK 1622] Length = 117 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F + D+ RGE I+I FHVK G Sbjct: 1 MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q + + P+R ++F+ L+ R+ Sbjct: 61 RNPKTGQVIPVKPKRGLLFRTGKELRDRV 89 >gi|14194853|sp|Q9F297|IHFA_NEIGO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9965582|gb|AAG10094.1| IfhB [Neisseria gonorrhoeae] Length = 96 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 4 TITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + K +++ + V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNSAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +EV I RRVV F AS LK Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLK 89 >gi|328953678|ref|YP_004371012.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328454002|gb|AEB09831.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 95 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +I+ + GLS++++ V + + I ++ + E + IS F F V+ K R Sbjct: 2 ALTKEKVINAINLKLGLSKQEARSAVERVLHLIKEALAQEEDVLISGFGKFTVRSKNPRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +++ + R+VVVFK S +L+ RI Sbjct: 62 GRNPQTKEDLILRARKVVVFKTSGVLRHRI 91 >gi|326803714|ref|YP_004321532.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a] gi|326651370|gb|AEA01553.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a] Length = 92 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV+ +++ G S+K+ V +F+ I + GE ++I F F V+++ +R GR Sbjct: 3 NKADLVQKVAESTGESKKNVQPVVDAVFSSIENFLADGENVQIIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT +E++I +V FKA LK Sbjct: 63 NPQTGEEIQIPASKVPAFKAGKGLK 87 >gi|218779503|ref|YP_002430821.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218760887|gb|ACL03353.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 97 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 48/96 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ +V+ I + GL K V L I S G+ + IS F F V+ K R Sbjct: 2 ALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN T + +D R+VV F S +L+ RI + +G Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRINSNEKG 97 >gi|315499460|ref|YP_004088263.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315417472|gb|ADU14112.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 SDL+ I+ E G+++ + V T+F I ++AV G+ + + SF F V+ K +R GRN Sbjct: 4 SDLIDKIATEHGVTKVAAKAIVDTVFGSIVEAAVLGQEVNLPSFGKFKVQDKPAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + +VF+ LK R+ Sbjct: 64 STGATIQIAASKKLVFQPGKALKDRL 89 >gi|218886875|ref|YP_002436196.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757829|gb|ACL08728.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+++++E L +D+T V T F+ + D+ + G+ ++I F +F +K G Sbjct: 1 MNKSELVRALAEEHELPVEDATVVVNTFFDCVRDALLEGDRVEIRGFGSFKIKGYRGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T V + P+R+ VF+A LK Sbjct: 61 RNPKTGDSVAVPPKRLPVFRAGKELK 86 >gi|328545805|ref|YP_004305914.1| integration host factor subunit beta [polymorphum gilvum SL003B-26A1] gi|326415545|gb|ADZ72608.1| Integration host factor subunit beta [Polymorphum gilvum SL003B-26A1] Length = 101 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +EI ++ +RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQRIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T Q+V +D + V FK +++R+ Sbjct: 61 GRNPRTGQKVDVDEKYVPFFKTGKEMRERL 90 >gi|312865869|ref|ZP_07726090.1| DNA-binding protein HU-alpha [Streptococcus downei F0415] gi|311098273|gb|EFQ56496.1| DNA-binding protein HU-alpha [Streptococcus downei F0415] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+KI +V FKA LK Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALK 87 >gi|304315774|ref|YP_003850919.1| histone family protein DNA-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777276|gb|ADL67835.1| histone family protein DNA-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + + ++ +G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + VFKA LK Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKALK 86 >gi|222153394|ref|YP_002562571.1| DNA-binding protein HU [Streptococcus uberis 0140J] gi|222114207|emb|CAR42760.1| DNA-binding protein HU [Streptococcus uberis 0140J] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIEGFLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+KI +V FKA LK Sbjct: 64 PQTGAEIKIAASKVPAFKAGKALK 87 >gi|212709200|ref|ZP_03317328.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens DSM 30120] gi|212688112|gb|EEB47640.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens DSM 30120] Length = 96 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ E +S+ + R V + S +G+ + + F TF+V+Q+ +R G Sbjct: 6 VNKSQLIEKIAAEANISKAAAGRVVDAFVASVTTSLSKGDDVTLVGFGTFNVRQRAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V F+A LK Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLK 91 >gi|83854722|ref|ZP_00948252.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1] gi|83941245|ref|ZP_00953707.1| integration host factor beta subunit [Sulfitobacter sp. EE-36] gi|83842565|gb|EAP81732.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1] gi|83847065|gb|EAP84940.1| integration host factor beta subunit [Sulfitobacter sp. EE-36] Length = 94 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F EI + G+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITGAMSDGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRL 90 >gi|152979637|ref|YP_001345266.1| histone family protein DNA-binding protein [Actinobacillus succinogenes 130Z] gi|150841360|gb|ABR75331.1| histone family protein DNA-binding protein [Actinobacillus succinogenes 130Z] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++KD+ + + I S +G+A+++ F TF V ++ +R+G Sbjct: 1 MNKTDLIDAIASAASLTKKDAKAALEATLDAITASLKKGDAVQLIGFGTFKVNERKARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI + F A LK + Sbjct: 61 RNPQTGAEIKIAASKAPAFVAGKALKDEV 89 >gi|58698807|ref|ZP_00373686.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|58534682|gb|EAL58802.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] Length = 115 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 54/91 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 +V I++E GLS++DS + + +EI S + +KISSF TF VK+K R G T Sbjct: 16 IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +++V I R V F+ S I+K + + + +G+ Sbjct: 76 SEKVMIQARNSVSFRPSKIIKNQSIINEQGK 106 >gi|291279805|ref|YP_003496640.1| integration host factor, subunit beta [Deferribacter desulfuricans SSM1] gi|290754507|dbj|BAI80884.1| integration host factor, beta subunit [Deferribacter desulfuricans SSM1] Length = 97 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ I++++ L++K V +FN I ++ GE ++I F +F ++QK ++V Sbjct: 1 MTKSQLIEIITEKYPKLTKKQIEFIVNGVFNTIKEALKNGEPVEIRGFGSFKIRQKEAKV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+I ++V FK +K+++++ Sbjct: 61 GRNPKTGETVQIPAKKVPYFKPGKEIKEQLIE 92 >gi|332977211|gb|EGK14007.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 94 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 53/88 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L+ ++++ +++KD+T+ V + + I ++ GE +++ F F V+++ +R Sbjct: 2 RVVNKTELISQVAEKTNMTKKDATQAVDAVLDTITEALKAGEKVQLIGFGNFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E+ I +V FK LK Sbjct: 62 KGRNPQTGKEIDIPASKVPAFKPGKALK 89 >gi|304406950|ref|ZP_07388604.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] gi|304343937|gb|EFM09777.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ LS+KD+T+ V +F+ I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELIAKVAELTELSKKDATKAVDAVFDAISDALQTGDKVQLVGFGNFEVRERQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I ++ FK LK Sbjct: 61 RNPQTGEEIEIAASKMPAFKPGKSLK 86 >gi|226312045|ref|YP_002771939.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599] gi|226094993|dbj|BAH43435.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599] Length = 90 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ L++KD+T+ V + + I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELIAKVAETTELTKKDATKAVDAVLDAIADALKTGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK I Sbjct: 61 RNPQTGEEIEIASSKVPAFKPGKQLKDSI 89 >gi|227893493|ref|ZP_04011298.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047] gi|227864718|gb|EEJ72139.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K+ V +F I D+ +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I V FK LK+ + Sbjct: 64 PQTGDEIQIPASEVPAFKPGKALKEAV 90 >gi|310815217|ref|YP_003963181.1| integration host factor subunit beta [Ketogulonicigenium vulgare Y25] gi|308753952|gb|ADO41881.1| integration host factor subunit beta [Ketogulonicigenium vulgare Y25] Length = 93 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ E L +D V T+F+EI ++ +G +++ F F VK + SR Sbjct: 1 MIRSELIQKIADENPHLYHRDVENIVNTIFDEITEALAKGNRVELRGFGAFSVKHRDSRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDPVDVEEKSVPFFKTGKLLRDRL 90 >gi|229008753|ref|ZP_04166148.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228752514|gb|EEM02147.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] Length = 90 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + LS+KD+T V + ++I + + E++++ F TF V+++ +R G Sbjct: 1 MNKTELINQVAVKSSLSKKDATASVQAILDQITKALQKEESVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FKA LK+ + Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKSLKEAV 89 >gi|169830293|ref|YP_001716275.1| histone family protein DNA-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|169637137|gb|ACA58643.1| histone family protein DNA-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 91 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + ++ + I ++ G+ +++ F TF +++ +R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V VFKA L++ + Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >gi|58337267|ref|YP_193852.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM] gi|227903852|ref|ZP_04021657.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796] gi|315038200|ref|YP_004031768.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112] gi|325956652|ref|YP_004292064.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC] gi|58254584|gb|AAV42821.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM] gi|227868739|gb|EEJ76160.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796] gi|312276333|gb|ADQ58973.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112] gi|323466655|gb|ADX70342.1| Integration host factor, beta subunit [Lactobacillus helveticus H10] gi|325333217|gb|ADZ07125.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC] gi|327183477|gb|AEA31924.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1118] Length = 91 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K+ V +F I D+ +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I V FK LK+ + Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90 >gi|117924422|ref|YP_865039.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] gi|117608178|gb|ABK43633.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +++ K+++ GLS+ D+ + + F I D+ G +++ F TF V ++ +R GRN Sbjct: 4 TEMKKTVADATGLSQADADKAIKASFAAIQDALAGGATVQLPGFGTFSVGERAARTGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 QT E++I + V FKA LK + D Sbjct: 64 QTGAEIQIAASKSVKFKAGKNLKDALND 91 >gi|161507461|ref|YP_001577415.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571] gi|260101627|ref|ZP_05751864.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075] gi|160348450|gb|ABX27124.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571] gi|260084560|gb|EEW68680.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K+ V +F I D+ +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I V FK LK+ + Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90 >gi|51245274|ref|YP_065158.1| integration host factor, alpha subunit [Desulfotalea psychrophila LSv54] gi|50876311|emb|CAG36151.1| related to integration host factor, alpha subunit [Desulfotalea psychrophila LSv54] Length = 103 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR ++ + ++ + G S+ + V + ++ D+ + GE+IK+ F TF V+ K R G Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I R+ V F+ S L++++ Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQV 101 >gi|124515663|gb|EAY57172.1| putative integration host factor, beta-subunit [Leptospirillum rubarum] gi|206602281|gb|EDZ38763.1| Putative integration host factor, beta-subunit [Leptospirillum sp. Group II '5-way CG'] Length = 98 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR DL+K I+ K G+S DS V LF + + GE+++I F F + + R+ Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V + R+ ++F+ ILK R+ Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRM 90 >gi|95930400|ref|ZP_01313136.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95133440|gb|EAT15103.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 90 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +I+++ LS+ DS + + + + ++ G+ I + F TF V + +RVG Sbjct: 1 MTKTELVTAIAEKAELSKSDSEKALKAFVDTVTEALKGGDKIALVGFGTFSVGDRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT E+KI +V FKA LK + Sbjct: 61 KNPQTGAEIKIPAAKVPKFKAGKALKDAV 89 >gi|290476984|ref|YP_003469895.1| DNA-binding protein HU-alpha [Xenorhabdus bovienii SS-2004] gi|289176328|emb|CBJ83133.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation [Xenorhabdus bovienii SS-2004] Length = 90 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ GL++ + + + N I +S G+++++ F TF V + R G Sbjct: 1 MNKTELVDAIAEQAGLTKTQAKTALESTLNAITESLRNGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI V F A LK + Sbjct: 61 RNPQTGNEIKIAAANVPAFSAGKALKDAV 89 >gi|195977763|ref|YP_002123007.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868935|ref|YP_002744883.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus] gi|225870057|ref|YP_002746004.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047] gi|195974468|gb|ACG61994.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699461|emb|CAW92972.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047] gi|225702211|emb|CAW99942.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FKA LK Sbjct: 64 PQTGEEIEIAASKVPAFKAGKALK 87 >gi|270158045|ref|ZP_06186702.1| integration host factor alpha subunit [Legionella longbeachae D-4968] gi|289163687|ref|YP_003453825.1| integration host factor, alpha subunit [Legionella longbeachae NSW150] gi|269990070|gb|EEZ96324.1| integration host factor alpha subunit [Legionella longbeachae D-4968] gi|288856860|emb|CBJ10671.1| putative integration host factor, alpha subunit [Legionella longbeachae NSW150] Length = 97 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++++ + +++ E LS+ S V F E+ + G +K+S F F ++ K R Sbjct: 3 ALSKAIMAETLCDELNLSKPASKEMVENFFEELRHALEHGHHVKLSGFGNFTLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ + RRVV FK LK +I Sbjct: 63 GRNPKTGEEIPVVARRVVTFKPGLKLKSKI 92 >gi|269218721|ref|ZP_06162575.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str. F0332] gi|269211832|gb|EEZ78172.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str. F0332] Length = 95 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 54/95 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +I R++L+ I+++ LS+ D+ + V L + + DS +GEA+KI+ ++ Sbjct: 1 MGMSINRTELIAKIAEKANLSKTDADKAVAALQDVLVDSLSKGEAVKITGLLAVERTERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN +T +E++I V A S LKK + + Sbjct: 61 ARKGRNPRTGEEIQIPAGYGVKLTAGSALKKAVTE 95 >gi|258405990|ref|YP_003198732.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798217|gb|ACV69154.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK+++ L+++++ V T F+ I D+ +G+ ++I F +F +K G Sbjct: 1 MNKSELVKALADAHNLTQEEAKDMVNTFFDSIKDALEQGDRVEIRGFGSFKIKHYEGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + P+R+ F+A LK+ + Sbjct: 61 RNPKTGEVVDVQPKRLPFFRAGKGLKEHL 89 >gi|117925417|ref|YP_866034.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609173|gb|ABK44628.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S L++ I+++ LS++++ V+ + EI + RGE +++ F F V+ + SR Sbjct: 1 MTKSQLIQMIAEQHNLSKQNAELAVSLVLGEIVKAMERGERVELRGFGVFEVRHRQSRQA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V + +RV FKA +++R+ Sbjct: 61 RNPKTGDSVAVSEKRVPFFKAGKEMRERV 89 >gi|121535091|ref|ZP_01666908.1| histone family protein DNA-binding protein [Thermosinus carboxydivorans Nor1] gi|121306341|gb|EAX47266.1| histone family protein DNA-binding protein [Thermosinus carboxydivorans Nor1] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ G+++KD+ + + +F I ++ + + ++I F TF V+ + +R G Sbjct: 1 MNKTELIASVAEKAGMTKKDAEKALNAVFASIEEALAQNDKVQIIGFGTFEVRTREARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + VFKA LK Sbjct: 61 RNPQTGKEIDIPASKSPVFKAGKGLK 86 >gi|220931899|ref|YP_002508807.1| histone family protein DNA-binding protein [Halothermothrix orenii H 168] gi|219993209|gb|ACL69812.1| histone family protein DNA-binding protein [Halothermothrix orenii H 168] Length = 137 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 8/97 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEIC----DSAVRGE----AIKISSFATFHV 56 +T++DLV +++ + GL++KDS + V +F+ I D + + E +++I F TF V Sbjct: 39 MTKTDLVDAVAAKTGLTKKDSNKAVKAVFDSIVEHLSDESKKAEGDRDSVQIIGFGTFEV 98 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 K + +R GRN QT +E+ I R V VF+ K+ + Sbjct: 99 KDRSARKGRNPQTGEEITIPARTVPVFRPGKSFKEAV 135 >gi|307942847|ref|ZP_07658192.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4] gi|307773643|gb|EFO32859.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4] Length = 99 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +EI ++ +RG+ +++ F F VK + +R+ Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T Q+V+++ + V FK ++ R+ D Sbjct: 61 GRNPRTGQKVEVEEKHVPFFKTGKEMRLRLND 92 >gi|329114632|ref|ZP_08243391.1| Integration host factor subunit beta [Acetobacter pomorum DM001] gi|326696112|gb|EGE47794.1| Integration host factor subunit beta [Acetobacter pomorum DM001] Length = 109 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ K L K++TR V +F I S G +++ F F VK++ RV Sbjct: 6 MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRV 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN +T +V++ + V FK L +R+ + G K ++ V Sbjct: 66 GRNPKTGVQVQVGKKLVPFFKTGKELHQRLNKPVSGSKRSRSSV 109 >gi|291523826|emb|CBK89413.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale DSM 17629] gi|291528706|emb|CBK94292.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale M104/1] Length = 90 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ G+S+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+ I + FKA LK Sbjct: 61 RNPQTGAEMTIAASKAPKFKAGKALK 86 >gi|15672484|ref|NP_266658.1| HU like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|116511328|ref|YP_808544.1| nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11] gi|125623363|ref|YP_001031846.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|281490996|ref|YP_003352976.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147] gi|14194595|sp|Q9CI64|DBH_LACLA RecName: Full=DNA-binding protein HU gi|12723384|gb|AAK04600.1|AE006285_8 HU like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|12830838|gb|AAK08212.1|AF320913_2 HllA [Lactococcus lactis] gi|12830846|gb|AAK08218.1|AF320915_2 HllA [Lactococcus lactis subsp. cremoris MG1363] gi|12830851|gb|AAK08222.1|AF320916_3 HllA [Lactococcus lactis] gi|116106982|gb|ABJ72122.1| bacterial nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11] gi|124492171|emb|CAL97100.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|281374754|gb|ADA64274.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis subsp. lactis KF147] gi|300070111|gb|ADJ59511.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326406030|gb|ADZ63101.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis CV56] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ ++ + GL++KDS + V + + +GE +++ F TF +++ +R GRN Sbjct: 4 KQDLIAEVAAKTGLTKKDSEKAVNAFGEVVTEFLAKGEKVQLIGFGTFETRERAAREGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + +KI V FKA LK Sbjct: 64 PQTGEAIKIAATVVPAFKAGKALK 87 >gi|5420132|emb|CAB46606.1| HimA protein [Yersinia pseudotuberculosis] Length = 98 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS + V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSNEMLKILVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 >gi|317131350|ref|YP_004090664.1| histone family protein DNA-binding protein [Ethanoligenens harbinense YUAN-3] gi|315469329|gb|ADU25933.1| histone family protein DNA-binding protein [Ethanoligenens harbinense YUAN-3] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ ++++ GLS+KD+ + L + I +S V E +++ F TF V + +R G Sbjct: 1 MTKAELIAKVAEKSGLSKKDAEKATGALIDSIVESLVAEEKVQLVGFGTFEVHHREARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I VFKA K Sbjct: 61 RNPRTKEEITIPASAYPVFKAGKPFK 86 >gi|297205895|ref|ZP_06923290.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16] gi|297149021|gb|EFH29319.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++KD V +F I D +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVAEVAAKTKLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALK 87 >gi|153003612|ref|YP_001377937.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. Fw109-5] gi|152027185|gb|ABS24953.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 126 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F+ + D+ RGE I+I FHVK G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + P+R ++F+ L+ R+ Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >gi|78356842|ref|YP_388291.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219247|gb|ABB38596.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K +S+E +S +++T VTT + + D+ G+ ++I F +F VKQ G Sbjct: 1 MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V + P+++ F+A LK+ + D Sbjct: 61 RNPKTGEIVNVQPKQLPFFRAGKELKEFLND 91 >gi|91774372|ref|YP_544128.1| nucleoid protein HU beta subunit [Methylobacillus flagellatus KT] gi|91708359|gb|ABE48287.1| bacterial nucleoid protein HU beta subunit [Methylobacillus flagellatus KT] Length = 90 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+KE G+S+ + + V + + G+ + + F TF V ++ +R G Sbjct: 1 MNKTELIEEIAKEAGISKAAAGKAVDAFTASVTAALKSGDTVTLIGFGTFGVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI R+ FKA LK Sbjct: 61 RNPQTGKEIKIAARKAPSFKAGKALK 86 >gi|99034453|ref|ZP_01314451.1| hypothetical protein Wendoof_01000745 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 101 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 48/80 (60%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I++E GLS++D + + +EI S V+ +KISSF TF VK+K R G T+++V Sbjct: 20 INQEIGLSKEDYVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKV 79 Query: 74 KIDPRRVVVFKASSILKKRI 93 I R V F+ S I+KK I Sbjct: 80 MIQARNSVSFRPSKIIKKSI 99 >gi|295696966|ref|YP_003590204.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] gi|295412568|gb|ADG07060.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] Length = 92 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ ++++ GL++K ++ V + + I ++ GE++ ++ F +F V+++ +R G Sbjct: 1 MTKQDLIAKVAEKSGLTKKAASAAVDAVLDTIQEALQAGESVGLTGFGSFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + VF+ LK+ + Sbjct: 61 RNPQTGETIEIAGGKTPVFRPGKTLKEAV 89 >gi|118602642|ref|YP_903857.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567581|gb|ABL02386.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 95 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 52/87 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +IT+ D+ ++ K ++ + F++I + GE++K+SSF F +++K SR Sbjct: 2 SITKKDIASALVKSMDITHVQALAITHDFFDQIKQTLASGESVKLSSFGNFVIREKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + V+I R+VVVFK+ LK Sbjct: 62 GRNPKTGELVEILARKVVVFKSGLKLK 88 >gi|294023740|ref|YP_003547059.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] gi|292677520|dbj|BAI99036.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] Length = 91 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL ++++ GLS+ D+ + V T+F+ I ++A +G+ I ++ F F VK R G Sbjct: 1 MNNSDLAEAVAGAHGLSKADAKKVVDTVFSTIGEAAAKGDEISLNGFGKFKVKASSERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + I + + F + ++K ++ Sbjct: 61 RNPATGETITIKASKKLGFTPAKVIKDKL 89 >gi|260220853|emb|CBA28834.1| Integration host factor subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 103 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ F L+ +D+ V + + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEELANRFSQLTHRDAEFAVKAILDAMNDALVRGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|254499149|ref|ZP_05111836.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351628|gb|EET10476.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 92 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + I D+ G+ + I F +F + +R G Sbjct: 1 MNKSELVDAIASGSGLTKADASRVLETFTSTITDALKSGDQVVIPGFGSFSTGNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I RV FKA LK+ + + Sbjct: 61 RNPQTGKVIEIKASRVAKFKAGKNLKEAVQE 91 >gi|115380144|ref|ZP_01467177.1| integration host factor, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|310823549|ref|YP_003955907.1| integration host factor subunit beta [Stigmatella aurantiaca DW4/3-1] gi|115362849|gb|EAU62051.1| integration host factor, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|309396621|gb|ADO74080.1| Integration host factor, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 113 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + V T+F + ++ RGE I+I FHVK G Sbjct: 1 MLKSDLINILVTKRGVTQKQAEATVETIFESMKEALCRGENIEIRGLGAFHVKNYQGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN +T Q + + P+R ++F+ L+ R+ + + + D++ PS Sbjct: 61 RNPKTGQVIPVKPKRGLLFRTGKELRDRV--NRPAAQSAQPDLSDPS 105 >gi|104773912|ref|YP_618892.1| histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300812170|ref|ZP_07092614.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123538|ref|YP_004033797.1| histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|21633223|gb|AAM22485.1| HlbA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422993|emb|CAI97675.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300496855|gb|EFK31933.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280101|gb|ADQ60820.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684299|gb|EGD26472.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 91 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++KD + V +F I + +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87 >gi|282855424|ref|ZP_06264745.1| DNA-binding protein HU [Pyramidobacter piscolens W5455] gi|282586720|gb|EFB91967.1| DNA-binding protein HU [Pyramidobacter piscolens W5455] Length = 91 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ G+S+K + ++ F I + +G+ +++ F TF V+++ +RVG Sbjct: 1 MTKNDLINEVAANAGMSKKAAGEAISATFAAIEKALAKGDRVQLVGFGTFEVRKRAARVG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + ++I ++V VF+A LK+++ Sbjct: 61 RNPQDPKKTIQIPAKKVPVFRAGKGLKEQV 90 >gi|256823167|ref|YP_003147130.1| histone family protein DNA-binding protein [Kangiella koreensis DSM 16069] gi|256796706|gb|ACV27362.1| histone family protein DNA-binding protein [Kangiella koreensis DSM 16069] Length = 90 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + R + ++ I DS +GE + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAAGADISKAAAGRALDSMLGAITDSLQKGEQVSLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I +V FKA LK + Sbjct: 61 RNPKTGETIQIKAAKVPGFKAGKALKDAV 89 >gi|254514390|ref|ZP_05126451.1| DNA-binding protein HU [gamma proteobacterium NOR5-3] gi|219676633|gb|EED32998.1| DNA-binding protein HU [gamma proteobacterium NOR5-3] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +I+ +++ D+ R + + + I ++ RG+ + + F TF VK + +R G Sbjct: 1 MNKSDLIDAIASAADINKSDAGRALDAVVDSITETLKRGDQVSLVGFGTFSVKHRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI V FKA LK + Sbjct: 61 RNPQTGETIKIKASNVPGFKAGKALKDAV 89 >gi|328467367|gb|EGF38445.1| DNA-binding protein II HB [Lactobacillus helveticus MTCC 5463] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K+ + +F I D+ +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVASKTKLTKKEVAAAIDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I V FK LK+ + Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALKEAV 90 >gi|154250603|ref|YP_001411427.1| integration host factor subunit beta [Parvibaculum lavamentivorans DS-1] gi|171769416|sp|A7HPD7|IHFB_PARL1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|154154553|gb|ABS61770.1| integration host factor, beta subunit [Parvibaculum lavamentivorans DS-1] Length = 110 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV +++ L ++D R V+T+F+EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + V FK L++R+ Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERL 90 >gi|294501077|ref|YP_003564777.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM B1551] gi|295706425|ref|YP_003599500.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM 319] gi|294351014|gb|ADE71343.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM B1551] gi|294804084|gb|ADF41150.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM 319] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F+ I ++ + +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDAVFDTILEALKAEDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALK 86 >gi|158523217|ref|YP_001531087.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158512043|gb|ABW69010.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++ + G+S+ ++ + V T F+ + D+ GE +++ +F VK+ S G Sbjct: 1 MNKLELVTALKDKTGVSKVEAAKIVKTFFDTMADTLATGERVEVRGLCSFFVKEYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V I P+++ FK LK+RI Sbjct: 61 RNPKTGEKVTIAPKKLPFFKCGKELKERI 89 >gi|270156948|ref|ZP_06185605.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|289164628|ref|YP_003454766.1| DNA-binding protein HU-beta [Legionella longbeachae NSW150] gi|269988973|gb|EEZ95227.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|288857801|emb|CBJ11645.1| putative DNA-binding protein HU-beta [Legionella longbeachae NSW150] Length = 92 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + I D+ G+ + I F +F + +R G Sbjct: 1 MNKSELVDAIASGSGLTKADASRVLETFTSTITDALRSGDQVVIPGFGSFSTGNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I RV FKA LK+ + + Sbjct: 61 RNPQTGKVIQIKASRVAKFKAGKNLKEAVQE 91 >gi|154253667|ref|YP_001414491.1| histone family DNA-binding protein [Parvibaculum lavamentivorans DS-1] gi|154157617|gb|ABS64834.1| histone family protein DNA-binding protein [Parvibaculum lavamentivorans DS-1] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ GLS+ D+T+ V +F+ I DS +GE +++ F TF+V + + G Sbjct: 1 MNKNDLIAEVADRSGLSKADATKAVDYVFDIITDSLKKGEEVRLVGFGTFNVSNRAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKQPKFKAGKGLKDAV 89 >gi|46580273|ref|YP_011081.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|120602345|ref|YP_966745.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46449690|gb|AAS96340.1| DNA-binding protein HU, beta subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120562574|gb|ABM28318.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311233745|gb|ADP86599.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 93 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 54/87 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++S+E + +++T V T + + DS + G+ ++I F +F +K G G Sbjct: 1 MNKSELIRTLSEETNIPIEEATIVVNTFIDNMKDSLLAGDRVEIRGFGSFKIKDYGGYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T + V ++P+R+ F+A LK+ Sbjct: 61 RNPKTGKMVDVEPKRLPFFRAGKELKE 87 >gi|149177307|ref|ZP_01855912.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797] gi|148843832|gb|EDL58190.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797] Length = 148 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++VK IS+E GL++ + V F+ I D+ V + I++ +F F VK++ +R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V ++ + VV FK ++KR+ Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRV 89 >gi|39997696|ref|NP_953647.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|39984588|gb|AAR35974.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|298506629|gb|ADI85352.1| integration host factor, beta subunit [Geobacter sulfurreducens KN400] Length = 96 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ K L+RKDS V +F+ I D+ GE ++I F +F V+++G+R Sbjct: 1 MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ VKI ++ FK L++R+ Sbjct: 61 ARNPKSGAIVKIPAKKTPFFKTGKELRERV 90 >gi|189499304|ref|YP_001958774.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] gi|189494745|gb|ACE03293.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V+ N + G+ I + F TF ++ +R G Sbjct: 1 MSKAELVEKIASQAGLTKADAERAVSAFVNVVTAGLKAGDDITLVGFGTFSTGERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FKA L+ + Sbjct: 61 RNPQTGETISIAAKKVVKFKAGKALRDEV 89 >gi|313894803|ref|ZP_07828363.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str. F0430] gi|320530142|ref|ZP_08031212.1| putative integration host factor, beta subunit [Selenomonas artemidis F0399] gi|312976484|gb|EFR41939.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str. F0430] gi|320137575|gb|EFW29487.1| putative integration host factor, beta subunit [Selenomonas artemidis F0399] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ L++KD+ + V +F I + G+ +++ F TF VK + +R G Sbjct: 1 MNKQELVANVAEQANLTKKDAEKAVNAIFETIKGALSEGDRVQLIGFGTFEVKARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I + VFKA LK Sbjct: 61 RNPRTGKEINIPASKTPVFKAGKALK 86 >gi|15613872|ref|NP_242175.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] gi|14194649|sp|Q9KDA5|DBH1_BACHD RecName: Full=DNA-binding protein HU-1 gi|10173925|dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ LS+KD+++ V +F I + G +++ F +F V+++ +R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FK LK + Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAV 89 >gi|118593738|ref|ZP_01551107.1| integration host factor subunit beta [Stappia aggregata IAM 12614] gi|118433648|gb|EAV40311.1| integration host factor subunit beta [Stappia aggregata IAM 12614] Length = 99 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +E+ ++ +RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T Q+V++D + V FK ++ R+ D Sbjct: 61 GRNPRTGQKVEVDEKFVPFFKTGKEMRIRLND 92 >gi|78188818|ref|YP_379156.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] gi|78171017|gb|ABB28113.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] Length = 102 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 56/98 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T+ DLV +I++ GL++ ++ V LF I +S G I+I F +F+++QK Sbjct: 1 MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V ++ ++V FK S K + + ++ Sbjct: 61 VRKARNPRTGEKVMVESKQVPSFKISREFKLAVSESLK 98 >gi|303242803|ref|ZP_07329270.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] gi|302589653|gb|EFL59434.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] Length = 92 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV SI+ + GL++K+S + L + + ++ +G+ + + F TF V+ + +R G Sbjct: 1 MNKTELVNSIASKSGLNKKNSEAALNALISSVEETLEKGDKVVLVGFGTFEVRNRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + VFKA LK Sbjct: 61 RNPQTKKEITIPASKAPVFKAGKGLK 86 >gi|220903465|ref|YP_002478777.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867764|gb|ACL48099.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 95 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59 M KT+T++D+V++I +E +R D V L EI +A++ + A+ IS F F K Sbjct: 1 MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLL-EIMKTAIKKDRALLISGFGKFECYDK 59 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86 SR GRN +T++ + + PR+V+VF+ S Sbjct: 60 ASRKGRNPKTDETITLPPRKVMVFRLS 86 >gi|52842083|ref|YP_095882.1| hypothetical protein lpg1858 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629194|gb|AAU27935.1| HupB DNA binding protein HU-beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 100 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + D +G+ + I F +F + +R G Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I RV FKA LK+ + Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 97 >gi|298528155|ref|ZP_07015559.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511807|gb|EFI35709.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K +++E LS +++T VT F+ + ++ G+ ++I F +F +K+ G Sbjct: 1 MNKSELIKRLAEERDLSLEEATEIVTIFFDSMKEALQNGDRVEIRGFGSFKIKEYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + P+R+ F+A LK+ + Sbjct: 61 RNPKTGKPVNVSPKRLPFFRAGKELKEYL 89 >gi|254449408|ref|ZP_05062845.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|198263814|gb|EDY88084.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] Length = 117 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + RS+L +I+++ L ++D R V T+F I ++ G+ +++ F F VK++ Sbjct: 22 ERQMIRSELTDTIAEQNPHLYQRDVERIVNTIFGRIIEAMSNGDRVELRGFGAFSVKKRD 81 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R+GRN +T + V+++ + V FK +L+ R+ Sbjct: 82 ARLGRNPRTGEAVQVEEKHVPFFKTGKLLRDRL 114 >gi|226953082|ref|ZP_03823546.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244] gi|294650671|ref|ZP_06728025.1| DNA-binding protein HU-beta family protein [Acinetobacter haemolyticus ATCC 19194] gi|226836174|gb|EEH68557.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244] gi|292823462|gb|EFF82311.1| DNA-binding protein HU-beta family protein [Acinetobacter haemolyticus ATCC 19194] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ G+S+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSV 89 >gi|295704900|ref|YP_003597975.1| DNA-binding protein HU [Bacillus megaterium DSM 319] gi|294802559|gb|ADF39625.1| DNA-binding protein HU [Bacillus megaterium DSM 319] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 52/87 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+ +++ + L+++D+ + V LF I ++ E I++ F TF V+++ +R GRN Sbjct: 3 KAELIDAVATKSELTKQDTKKAVDALFETISNTLANEEKIQLIGFGTFEVRERAARTGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E+ I +V FK LK+ + Sbjct: 63 PQTGEEMTIPASKVPAFKPGKELKEAL 89 >gi|291614503|ref|YP_003524660.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291584615|gb|ADE12273.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 94 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++++ G S+ D+ R + L + + + +G+ + + F TF V+++ +R G Sbjct: 1 MNRKELIDALAEKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T E+KI +V FKA + LK + Sbjct: 61 RNPATGAELKIKASKVPAFKAGATLKATV 89 >gi|288904847|ref|YP_003430069.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34] gi|306830879|ref|ZP_07464041.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977779|ref|YP_004287495.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731573|emb|CBI13128.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34] gi|304426902|gb|EFM30012.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177707|emb|CBZ47751.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FKA LK Sbjct: 64 PQTGEEIEIAASKVPAFKAGKALK 87 >gi|238917311|ref|YP_002930828.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750] gi|238872671|gb|ACR72381.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750] Length = 99 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+++ LS+KD+ + V + + + GE I++ F TF V ++ +R G Sbjct: 1 MNKSELVAAIAEKAELSKKDAEKAVKAFTDTVAEQLKAGEKIQLVGFGTFEVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT + ++I + FKA LK Sbjct: 61 KNPQTGKAIQIPASKAPKFKAGKALK 86 >gi|206973313|ref|ZP_03234235.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] gi|206732197|gb|EDZ49397.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] Length = 93 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I +++L K ++++ L +KD T+ + I ++ GE ++I SF TF V+++ +R G Sbjct: 4 INKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILSFCTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++++I + FKA LK+ + Sbjct: 64 RNPQTGKKMQIAASKAPAFKAGKELKEAV 92 >gi|91763239|ref|ZP_01265203.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique HTCC1002] gi|91717652|gb|EAS84303.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique HTCC1002] Length = 100 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 47/82 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ SI + G S+ S + I D+ + +K+S F TF ++ K SR+G Sbjct: 6 LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN +T ++ I R VV+FKAS Sbjct: 66 RNPKTKEQTTISNRDVVLFKAS 87 >gi|78485524|ref|YP_391449.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2] gi|78363810|gb|ABB41775.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2] Length = 90 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E GL++ D+ + + + + + G+++ I F TF V ++ +R G Sbjct: 1 MNKTELVSAIAEEAGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTFKVGERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F A LK+ + Sbjct: 61 RNPQTGAEMQIPAAKVPKFSAGKALKEAV 89 >gi|71083725|ref|YP_266445.1| DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062838|gb|AAZ21841.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062] Length = 102 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 47/82 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ SI + G S+ S + I D+ + +K+S F TF ++ K SR+G Sbjct: 8 LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN +T ++ I R VV+FKAS Sbjct: 68 RNPKTKEQTTISNRDVVLFKAS 89 >gi|238922939|ref|YP_002936452.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656] gi|238874611|gb|ACR74318.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656] Length = 99 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ G+S+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 10 MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 69 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+ I + FKA LK Sbjct: 70 RNPQTGAEMTIAASKAPKFKAGKALK 95 >gi|291542886|emb|CBL15996.1| bacterial nucleoid protein Hbs [Ruminococcus bromii L2-63] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 54/86 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GLS+KD+ + V++ + I ++ GE I+I+ F TF +Q+ +R G Sbjct: 1 MNKTELIAAVAEQSGLSKKDAEKAVSSTIDTIINTVAEGEKIQIAGFGTFEQRQRNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 + +T + ++I +V FKA K Sbjct: 61 CDPRTGKSIEIPASKVPAFKAGKGFK 86 >gi|256005929|ref|ZP_05430873.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281416578|ref|ZP_06247598.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|255990100|gb|EEU00238.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281407980|gb|EFB38238.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|316939684|gb|ADU73718.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 1313] Length = 91 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ SI+ + GLS+K+S + + ++ +G+ + + F TF VK + +R G Sbjct: 1 MNKTELINSIASKSGLSKKNSEAALNAFIASVEEALKKGDKVVLVGFGTFEVKNRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + VFKA LK Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLK 86 >gi|54294745|ref|YP_127160.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens] gi|54297775|ref|YP_124144.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris] gi|148359403|ref|YP_001250610.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby] gi|296107449|ref|YP_003619149.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99 Alcoy] gi|53751560|emb|CAH12978.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris] gi|53754577|emb|CAH16061.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens] gi|148281176|gb|ABQ55264.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby] gi|295649350|gb|ADG25197.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99 Alcoy] gi|307610561|emb|CBX00149.1| hypothetical protein LPW_18941 [Legionella pneumophila 130b] Length = 92 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + D +G+ + I F +F + +R G Sbjct: 1 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I RV FKA LK+ + Sbjct: 61 RNPQTGKTIQIKASRVAKFKAGKNLKEAV 89 >gi|159043576|ref|YP_001532370.1| integration host factor subunit beta [Dinoroseobacter shibae DFL 12] gi|189045035|sp|A8LSF5|IHFB_DINSH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|157911336|gb|ABV92769.1| integration host factor, beta subunit [Dinoroseobacter shibae DFL 12] Length = 95 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++ E L ++D R V T+F EI ++ G+ +++ F F VK + +R Sbjct: 1 MIRSELIQIVADENPHLYQRDVERIVNTVFEEIIEAMSNGDRVELRGFGAFSVKHRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVAVEAKSVPFFKTGKLLRDRL 90 >gi|269468161|gb|EEZ79863.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium] Length = 91 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++I+ GLS+ D+ + + + I + +G+ ++I+ F +F + + +R G Sbjct: 1 MNKTELIEAIASAAGLSKADAGKALNATTDAITGAMAKGDGVQITGFGSFITRARAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I V FKA LK+ + Sbjct: 61 RNPQTGATIQIKASTVAAFKAGKALKEAV 89 >gi|218134050|ref|ZP_03462854.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC 43243] gi|217991425|gb|EEC57431.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC 43243] Length = 96 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + L I + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAEKAELSKKDAEAALKALTATIAEELTKGEKVQLVGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT + +KI + FKA LK Sbjct: 61 KNPQTGKAIKIPASKAPKFKAGKALK 86 >gi|108805105|ref|YP_645042.1| nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941] gi|108766348|gb|ABG05230.1| bacterial nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+++ S+ ++ RF + DS +GE ++I+ F F+V+++ +R G Sbjct: 1 MNKSELIQEIAEKTNGSKSEAQRFFDAFAEVVRDSLKKGEPVQITGFGKFYVQEREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT Q++ I P +V F A + LK+ I Sbjct: 61 INPQTKQKITIPPSKVPKFTAGNSLKEAI 89 >gi|227892085|ref|ZP_04009890.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] gi|227866124|gb|EEJ73545.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] Length = 91 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV I+++ G+S+K++ + + + G I++ F TF V+++ +R G Sbjct: 1 MNKSELVSVIAEKMGVSKKEAEIATNAFISTVSTALTEGRKIQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ + R V VFKA LK+ + Sbjct: 61 RNPQTGKEMLLPGRNVPVFKAGKSLKEAV 89 >gi|317476991|ref|ZP_07936233.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316906784|gb|EFV28496.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +S+ G + KD++ VT+L +++ G I I F TF VK+K R+ N Sbjct: 5 EFTSELSRRLGYTLKDTSELVTSLLSDMTRQLEEGNVISIQGFGTFEVKKKAERISVNPT 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T Q + + P+ V+ +K S++LK Sbjct: 65 TKQRMLVPPKLVLTYKPSTLLK 86 >gi|163751872|ref|ZP_02159086.1| DNA-binding protein, HU family [Shewanella benthica KT99] gi|161328222|gb|EDP99386.1| DNA-binding protein, HU family [Shewanella benthica KT99] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + DS G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIATGADISKAAAGRALDSFIGAVTDSLKNGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI + FKA LK + Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAV 89 >gi|291529702|emb|CBK95288.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale M104/1] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++++ GL+ KD V + ++ V+G+ +++ F TF V ++ +R+G Sbjct: 1 MTKAELVSAMAEKTGLTNKDVAAAVNAFTESVKEALVKGDKVQLVGFGTFEVAERAARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + ++I + +K SS LK Sbjct: 61 RNPSTGESIQIAASKTAKWKPSSALK 86 >gi|254469062|ref|ZP_05082468.1| DNA-binding protein HU-beta [beta proteobacterium KB13] gi|207087872|gb|EDZ65155.1| DNA-binding protein HU-beta [beta proteobacterium KB13] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+++I+ G ++ D+ R + I + +G+ + + F TF V ++ +R G Sbjct: 1 MNKGELIEAIASATGSTKADAGRALDATIENITKALKKGDTVTLIGFGTFKVSKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+KI R+V FKA + LK Sbjct: 61 RNPQTGAELKIPARKVPSFKAGAGLK 86 >gi|320355050|ref|YP_004196389.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320123552|gb|ADW19098.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 95 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ + +++ T+ + D+ RGE+I+I F +F VK+ S G Sbjct: 1 MNKSELIEALAEAMNIPIREAASITNTIIETMSDALARGESIEIRGFGSFVVKEYESYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++K+ P+++ FK L++++ Sbjct: 61 RNPKTGEKIKVKPKKLPFFKVGKDLREQV 89 >gi|206890254|ref|YP_002249563.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742192|gb|ACI21249.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 92 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Query: 7 RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +S+L++ +SK+ L++K + +F+ + ++ RGE I+I FA F VKQ+ R+ R Sbjct: 3 KSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERIAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKK 91 N +T +++K+ +R + FK S LK+ Sbjct: 63 NPKTGEQIKVPTQRAINFKMSKALKE 88 >gi|126641682|ref|YP_001084666.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978] gi|169633492|ref|YP_001707228.1| DNA-binding protein HU-beta [Acinetobacter baumannii SDF] gi|169796090|ref|YP_001713883.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE] gi|184157983|ref|YP_001846322.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|213157177|ref|YP_002319222.1| DNA-binding protein HU [Acinetobacter baumannii AB0057] gi|215483545|ref|YP_002325764.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB307-0294] gi|239501896|ref|ZP_04661206.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB900] gi|260550155|ref|ZP_05824369.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260555139|ref|ZP_05827360.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC 19606] gi|262278966|ref|ZP_06056751.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202] gi|293608200|ref|ZP_06690503.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299770349|ref|YP_003732375.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1] gi|301347498|ref|ZP_07228239.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB056] gi|301511278|ref|ZP_07236515.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB058] gi|301597453|ref|ZP_07242461.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB059] gi|332851741|ref|ZP_08433666.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332865884|ref|ZP_08436664.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] gi|332874442|ref|ZP_08442345.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059] gi|126387566|gb|ABO12064.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978] gi|169149017|emb|CAM86894.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE] gi|169152284|emb|CAP01194.1| DNA-binding protein HU-beta [Acinetobacter baumannii] gi|183209577|gb|ACC56975.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|213056337|gb|ACJ41239.1| DNA-binding protein HU [Acinetobacter baumannii AB0057] gi|213986875|gb|ACJ57174.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB307-0294] gi|260406910|gb|EEX00389.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260411681|gb|EEX04978.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC 19606] gi|262259317|gb|EEY78050.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202] gi|292828773|gb|EFF87135.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298700437|gb|ADI91002.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1] gi|322508301|gb|ADX03755.1| hupB [Acinetobacter baumannii 1656-2] gi|323517927|gb|ADX92308.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715] gi|325122069|gb|ADY81592.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus PHEA-2] gi|332729748|gb|EGJ61083.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332734934|gb|EGJ66020.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] gi|332737286|gb|EGJ68210.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ G+S+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSV 89 >gi|163943398|ref|YP_001642628.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|163865595|gb|ABY46653.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ G+ ++ F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQTLGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAV 89 >gi|50084585|ref|YP_046095.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1] gi|49530561|emb|CAG68273.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + + ++ +G+ + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAEKGGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTFSVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSV 89 >gi|219681418|ref|YP_002467803.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471092|ref|ZP_05635091.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624261|gb|ACL30416.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 92 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ISK+ LS+ + + T + I DS +GE+++I F TF V + SR G Sbjct: 1 MNKTQLINVISKKSNLSKTQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V F + LK I Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAI 89 >gi|319787633|ref|YP_004147108.1| histone family protein DNA-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317466145|gb|ADV27877.1| histone family protein DNA-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ E +++ +++R V + N + + +G+A+ + F TF V+++ +R G Sbjct: 1 MNKTDLIDAVASEAEITKAEASRAVDAVVNSVTKALKKGDAVTLVGFGTFQVRKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + FKA LK Sbjct: 61 RNPKTGETIKIKASKNPAFKAGKALK 86 >gi|187477853|ref|YP_785877.1| integration host factor subunit beta [Bordetella avium 197N] gi|115422439|emb|CAJ48964.1| integration host factor beta-subunit [Bordetella avium 197N] Length = 119 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 60/102 (58%), Gaps = 3/102 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++S + L+ +D+ V T+ + + + G+ I+I F +F + Q+ RV Sbjct: 1 VTKSELIAALSARYPQLAARDTDLAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN ++ ++V + ++V FKA L++R+ D+ G + D Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGNEAGGD 100 >gi|325661342|ref|ZP_08149968.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472291|gb|EGC75503.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium 4_1_37FAA] Length = 91 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K +S GL++ + V + + I + ++GE + I+ F TF V+++ R+G Sbjct: 1 MNKLELIKEVSGRTGLTQVATKDVVEAVLDVITNQLIKGEKVAIAGFGTFEVRERAERMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q+ +E+ I + V FKA LK ++ Sbjct: 61 RNPQSGEEMLIAASKNVKFKAGKALKDKV 89 >gi|228472724|ref|ZP_04057482.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] gi|228275775|gb|EEK14541.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] Length = 90 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 52/85 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++E GLS+ D+ + + + + +G+ I + F ++ V +K +R G Sbjct: 1 MNKTELIDAIAQEAGLSKADAKKALEAFLATVEKTLKKGDKISLVGFGSWSVTEKAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI ++VV FKA + L Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTEL 85 >gi|319942323|ref|ZP_08016638.1| integration host factor subunit alpha [Sutterella wadsworthensis 3_1_45B] gi|319804196|gb|EFW01096.1| integration host factor subunit alpha [Sutterella wadsworthensis 3_1_45B] Length = 114 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+ ++ L +++ GL R + V T F + + +G+ +KI F V+ K +R Sbjct: 14 TLNKASLAEALVDHVAGLDRPHAKLIVETFFELVAEHLEKGDTVKIPGLGNFSVRDKVAR 73 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRNL+T + V I RRVV F S L R+ ++ Sbjct: 74 PGRNLKTGETVTITERRVVTFHPSGTLNSRVTTNL 108 >gi|304382715|ref|ZP_07365207.1| integration host factor subunit alpha [Prevotella marshii DSM 16973] gi|304336166|gb|EFM02410.1| integration host factor subunit alpha [Prevotella marshii DSM 16973] Length = 96 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + D + +S+ G + +D+ + + TL + +CD GE + + F TF VK++ RV Sbjct: 1 MNNKDFITELSRRSGYTPEDTQKLIHTLIDGLCDGFDAGEPVVWAGFGTFEVKKRLERVI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T Q++ I P+ V+ FK S K+R+ Sbjct: 61 TNPSTGQKMLIPPKLVLNFKPVSSAKERL 89 >gi|283780883|ref|YP_003371638.1| histone family protein DNA-binding protein [Pirellula staleyi DSM 6068] gi|283439336|gb|ADB17778.1| histone family protein DNA-binding protein [Pirellula staleyi DSM 6068] Length = 180 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T+ ++VK+IS+E GL++ + V F+ I ++ V I++ +F F VK++ + Sbjct: 54 SPVVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAA 113 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R RN +T Q V + + VV FK +++++ Sbjct: 114 RKARNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145 >gi|94495282|ref|ZP_01301863.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] gi|94425548|gb|EAT10568.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] Length = 91 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL ++++ E +++ D+ + V +F I D+A +GE I ++ F F VK + +R G Sbjct: 1 MNNSDLAEALAAEHDVTKADARKLVDAVFANIADAAAKGEEISLNGFGKFKVKDQPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T+ ++I + + F + +K ++ Sbjct: 61 RNPSTSATIQIAASKKLAFTPAKAVKDQL 89 >gi|113461005|ref|YP_719072.1| integration host factor subunit alpha [Haemophilus somnus 129PT] gi|170717573|ref|YP_001784659.1| integration host factor subunit alpha [Haemophilus somnus 2336] gi|123031334|sp|Q0I3K4|IHFA_HAES1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044702|sp|B0UU60|IHFA_HAES2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|112823048|gb|ABI25137.1| integration host factor, alpha-subunit [Haemophilus somnus 129PT] gi|168825702|gb|ACA31073.1| integration host factor, alpha subunit [Haemophilus somnus 2336] Length = 97 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +L S+ ++ GL++ ++ + V F +I S GE +K+S F F ++ K SR Sbjct: 2 ALTKIELKNSLIEQ-GLNKLEAKKVVEGFFEQIRVSLENGEDVKLSGFGNFELRDKSSRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + + RRVVVF+ L+ R+ Sbjct: 61 GRNPKTGEAIPVSARRVVVFRPGQKLRSRV 90 >gi|251782882|ref|YP_002997185.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391512|dbj|BAH81971.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322412211|gb|EFY03119.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323127685|gb|ADX24982.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 91 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FKA LK Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87 >gi|325294223|ref|YP_004280737.1| histone family protein DNA-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064671|gb|ADY72678.1| histone family protein DNA-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 93 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 53/87 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SDLV +I+++ G+ +KD+ + + + ++ +GE ++I F TF +K++ RV Sbjct: 1 MTKSDLVAAIAEKAGIRKKDAEAALNGFIDVVTEALAKGEKVEIRGFGTFLMKERAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++V++ + FK LK+ Sbjct: 61 RNPRTGEKVEVPAKLSPAFKPGKDLKE 87 >gi|167624683|ref|YP_001674977.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] gi|212636024|ref|YP_002312549.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3] gi|167354705|gb|ABZ77318.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] gi|212557508|gb|ACJ29962.1| Histone-like bacterial DNA-binding protein [Shewanella piezotolerans WP3] Length = 90 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKIALVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89 >gi|332704210|ref|ZP_08424298.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332554359|gb|EGJ51403.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 90 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV IS++ +S+ D+ R + + + + V + ++ F TF V+++ R G Sbjct: 1 MTKADLVAKISEKAAISKADAERSLNAFLDAVGSTLVGEGKLTLTGFGTFAVEERKERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +VV F+ +LK Sbjct: 61 RNPRTGEEIKIPATKVVKFRPGKLLK 86 >gi|167036676|ref|YP_001664254.1| histone family protein DNA-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039345|ref|YP_001662330.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X514] gi|256752345|ref|ZP_05493206.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913985|ref|ZP_07131302.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X561] gi|307725332|ref|YP_003905083.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X513] gi|320115103|ref|YP_004185262.1| histone family protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853585|gb|ABY91994.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X514] gi|166855510|gb|ABY93918.1| histone family protein DNA-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748756|gb|EEU61799.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300890670|gb|EFK85815.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X561] gi|307582393|gb|ADN55792.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X513] gi|319928194|gb|ADV78879.1| histone family protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 91 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + +FKA LK Sbjct: 61 RNPQTKEEITIPASKAPIFKAGKALK 86 >gi|118602049|ref|YP_908749.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|118614789|ref|YP_908572.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|134044455|ref|YP_001101716.1| DNA-binding protein HU [Yersinia ruckeri] gi|134044925|ref|YP_001102091.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str. IP275] gi|134047232|ref|YP_001101901.1| DNA-binding protein HU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165937926|ref|ZP_02226486.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|229516100|ref|ZP_04405550.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|237640210|ref|YP_002891065.1| hypothetical protein peH4H_0022 [Escherichia coli] gi|237809930|ref|YP_002894369.1| hypothetical protein pAR060302_0023 [Escherichia coli] gi|237810119|ref|YP_002894558.1| hypothetical protein pAM04528_0022 [Salmonella enterica] gi|300925740|ref|ZP_07141598.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|118596880|dbj|BAF38184.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|118597058|dbj|BAF38361.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|133904818|gb|ABO40835.1| DNA-binding protein HU [Yersinia ruckeri] gi|133905151|gb|ABO41166.1| DNA-binding protein HU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905459|gb|ABO42221.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str. IP275] gi|165913949|gb|EDR32566.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|229346880|gb|EEO11848.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|229561429|gb|ACQ77632.1| conserved hypothetical protein [Escherichia coli] gi|229561603|gb|ACQ77805.1| conserved hypothetical protein [Salmonella enterica] gi|229561785|gb|ACQ77986.1| conserved hypothetical protein [Escherichia coli] gi|300418162|gb|EFK01473.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|324007578|gb|EGB76797.1| DNA-binding protein HU [Escherichia coli MS 57-2] gi|327536459|gb|AEA95292.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Dublin] gi|332144534|dbj|BAK19754.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 90 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TFHVK++ +R G Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFHVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSV 89 >gi|77919284|ref|YP_357099.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus DSM 2380] gi|77545367|gb|ABA88929.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus DSM 2380] Length = 90 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV +++++ GLS+ ++ + + + I ++ GE + + F TF V ++ +RVG Sbjct: 1 MTKADLVNAMAEKAGLSKAETEKAIKAFTDVITEALKAGEKVALVGFGTFSVGERAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT +++ I +V FK LK Sbjct: 61 QNPQTGEKMNIPAAKVPKFKPGKALK 86 >gi|303239804|ref|ZP_07326328.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] gi|302592741|gb|EFL62465.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] Length = 91 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV S++++ LS+KD+ + + + ++ +G+ I++ F +F V+++ +R G Sbjct: 1 MNKTDLVASMAEKGDLSKKDAEKALNAFIESVEEALSQGDKIQLVGFGSFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + +FK LK Sbjct: 61 RNPQTKEEINIPATKAPIFKVGKGLK 86 >gi|94987336|ref|YP_595269.1| nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] gi|94731585|emb|CAJ54948.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] Length = 91 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVKS+S++ +S ++T V T + + +S ++G +++ F +F VK+ G Sbjct: 1 MNKSELVKSLSEQANISLDEATLVVNTFVDSMKESLLKGGRVEVRGFGSFKVKEYEGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V + P+R+ F+A LK+ + Sbjct: 61 RNPRTGEKVVVQPKRLPFFRAGKELKEYL 89 >gi|291518256|emb|CBK73477.1| Bacterial nucleoid DNA-binding protein [Butyrivibrio fibrisolvens 16/4] Length = 90 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + +S+KD+ V + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIASKANISKKDAEASVKAFTEVVAEELKKGEKIQLVGFGTFEVSKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI + FKA LK I Sbjct: 61 RNPQTGAEMKIPASKAPKFKAGKALKDSI 89 >gi|218777981|ref|YP_002429299.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218759365|gb|ACL01831.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 95 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D+V+ I + G ++K+S V L I DS G+ + IS F F +KQK R Sbjct: 2 ALTKCDIVEKIY-DMGFTKKESVDVVEQLIEIIKDSLQEGDDVLISGFGKFCIKQKDQRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T +++ + R+VV FK S L+ I D Sbjct: 61 GRNPATGKDLMLRERKVVTFKCSGKLRDLIND 92 >gi|157374683|ref|YP_001473283.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157317057|gb|ABV36155.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 90 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89 >gi|119356085|ref|YP_910729.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353434|gb|ABL64305.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 91 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V N + +S GE + + F TF ++ R G Sbjct: 1 MSKAELVEKIASQAGLTKVDAERAVNAFMNVVTESLKEGEDVTLVGFGTFTTGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + + I ++VV FK LK + Sbjct: 61 RNPQNGETITIAAKKVVKFKPGKALKAGV 89 >gi|313889131|ref|ZP_07822787.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844871|gb|EFR32276.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b] Length = 92 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++KD+ + + + + ++ GE +++ F TF V+Q+ +R G Sbjct: 1 MNKSELVASIAEKSGLTKKDAEQALNGFISSVQEALADGEKVQLVGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90 >gi|322436183|ref|YP_004218395.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321163910|gb|ADW69615.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 108 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++ L+R+D V LF+ + + G+ I+I F +F +Q+ SR+G Sbjct: 1 MTKADLVDKVTSLGDLTRRDGEVIVDLLFDSVIGALKSGDKIEIRGFGSFRTRQRNSRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +V + ++V FK S L+ Sbjct: 61 RNPKTGAKVDVPAKKVPFFKPSKELR 86 >gi|328949956|ref|YP_004367291.1| histone family protein DNA-binding protein [Marinithermus hydrothermalis DSM 14884] gi|328450280|gb|AEB11181.1| histone family protein DNA-binding protein [Marinithermus hydrothermalis DSM 14884] Length = 97 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 51/91 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL +KD V +E+ D R ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVNHVAETTGLKKKDVKAVVDAFLSEVADMLDRDYKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK+++ Sbjct: 65 TGVKPGTTEKIKIPASKYPAFKPGKALKEKV 95 >gi|262370473|ref|ZP_06063799.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046] gi|262314815|gb|EEY95856.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046] Length = 90 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + I ++ G+ + + F TF+VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKSGDTVTLVGFGTFNVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDSV 89 >gi|228942908|ref|ZP_04105421.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976135|ref|ZP_04136633.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783586|gb|EEM31667.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816760|gb|EEM62872.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 93 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + N I + E ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAELTQKDAAAATQAVLNTITSALTNEEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|293374971|ref|ZP_06621266.1| DNA-binding protein HU [Turicibacter sanguinis PC909] gi|325843341|ref|ZP_08167924.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1] gi|292646381|gb|EFF64396.1| DNA-binding protein HU [Turicibacter sanguinis PC909] gi|325489370|gb|EGC91743.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1] Length = 90 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS LV I+++ L++KD+ +F++ + ++ + + + F TF V+++ +R G Sbjct: 1 MNRSQLVDKIAEKAELTKKDADKFLSAYIEAVTEALQADDKVALVGFGTFEVRERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RNL T + ++I+ + FKA LK Sbjct: 61 RNLHTGETIEIEASKYPAFKAGKALK 86 >gi|312143872|ref|YP_003995318.1| histone family protein DNA-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311904523|gb|ADQ14964.1| histone family protein DNA-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 99 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 59/98 (60%), Gaps = 10/98 (10%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA---------IKISSFATFH 55 +T+++L+ ++++ G+++KD+ + + + I + +R EA +++ F TF Sbjct: 1 MTKNELIDAVAENTGITKKDTGEVINNMIDTIMNH-LRAEAKKPEDDRDNVQLIGFGTFE 59 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 V+ + +R GRN QTN+E++I R+V VF++ K+ + Sbjct: 60 VRDRSARKGRNPQTNEEIQIPARKVPVFRSGKSFKETV 97 >gi|288958754|ref|YP_003449095.1| DNA-binding protein HU-beta [Azospirillum sp. B510] gi|288911062|dbj|BAI72551.1| DNA-binding protein HU-beta [Azospirillum sp. B510] Length = 90 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+T+ V +F+ I +S G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLVAHVAEASGLSKTDATKAVDAVFDSIAESLKNGDEVRLVGFGTFAVAERPATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +++ I + FKA LK Sbjct: 61 RNPRTGEKIDIPASKQPKFKAGKTLK 86 >gi|242279078|ref|YP_002991207.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121972|gb|ACS79668.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 90 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ G+++ D+ R + + + ++ V + ++ F TF V ++ RVG Sbjct: 1 MTKAELVVKIAEKAGMTKADAERCLNYFLDTVEETLVNEGKLTLTGFGTFQVDERKERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +VV F+ +LK Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKLLK 86 >gi|15675394|ref|NP_269568.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS] gi|21910682|ref|NP_664950.1| putative histone-like DNA-binding protein [Streptococcus pyogenes MGAS315] gi|28895628|ref|NP_801978.1| histone-like DNA-binding protein [Streptococcus pyogenes SSI-1] gi|50914589|ref|YP_060561.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394] gi|71903824|ref|YP_280627.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180] gi|71911036|ref|YP_282586.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005] gi|94988847|ref|YP_596948.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429] gi|94990748|ref|YP_598848.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270] gi|94992738|ref|YP_600837.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096] gi|94994725|ref|YP_602823.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750] gi|139473485|ref|YP_001128201.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo] gi|209559658|ref|YP_002286130.1| DNA-binding protein HU [Streptococcus pyogenes NZ131] gi|306827059|ref|ZP_07460357.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782] gi|61222559|sp|P0A3I0|DBH_STRP3 RecName: Full=DNA-binding protein HU gi|73919007|sp|Q5XB35|DBH_STRP6 RecName: Full=DNA-binding protein HU gi|73919008|sp|P0C097|DBH_STRP8 RecName: Full=DNA-binding protein HU gi|76365063|sp|P0C0H2|DBH_STRPY RecName: Full=DNA-binding protein HU gi|81175249|sp|P0C0H3|DBH_STRP1 RecName: Full=DNA-binding protein HU gi|5209328|gb|AAD40808.1|L38946_1 histone-like DNA-binding protein [Streptococcus pyogenes] gi|13622579|gb|AAK34289.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS] gi|21904884|gb|AAM79753.1| putative histone-like DNA-binding protein [Streptococcus pyogenes MGAS315] gi|28810877|dbj|BAC63811.1| putative histone-like DNA-binding protein [Streptococcus pyogenes SSI-1] gi|50903663|gb|AAT87378.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394] gi|71802919|gb|AAX72272.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180] gi|71853818|gb|AAZ51841.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005] gi|94542355|gb|ABF32404.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429] gi|94544256|gb|ABF34304.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270] gi|94546246|gb|ABF36293.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096] gi|94548233|gb|ABF38279.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750] gi|134271732|emb|CAM29965.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo] gi|209540859|gb|ACI61435.1| DNA-binding protein HU [Streptococcus pyogenes NZ131] gi|304430805|gb|EFM33816.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782] Length = 91 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FKA LK Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87 >gi|289579291|ref|YP_003477918.1| histone family protein DNA-binding protein [Thermoanaerobacter italicus Ab9] gi|297545442|ref|YP_003677744.1| histone family protein DNA-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|307264995|ref|ZP_07546556.1| histone family protein DNA-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390096|ref|ZP_08211658.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus JW 200] gi|289529004|gb|ADD03356.1| histone family protein DNA-binding protein [Thermoanaerobacter italicus Ab9] gi|296843217|gb|ADH61733.1| histone family protein DNA-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|306919980|gb|EFN50193.1| histone family protein DNA-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993961|gb|EGD52391.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus JW 200] Length = 91 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + +FKA LK Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALK 86 >gi|54295550|ref|YP_127965.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens] gi|54298700|ref|YP_125069.1| integration host factor subunit alpha [Legionella pneumophila str. Paris] gi|148358554|ref|YP_001249761.1| integration host factor subunit alpha [Legionella pneumophila str. Corby] gi|296108357|ref|YP_003620058.1| integration host factor (IHF) alpha subunit [Legionella pneumophila 2300/99 Alcoy] gi|81679131|sp|Q5WT88|IHFA_LEGPL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81679385|sp|Q5X1H9|IHFA_LEGPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|172047871|sp|A5IAL5|IHFA_LEGPC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|53752485|emb|CAH13917.1| hypothetical protein lpp2764 [Legionella pneumophila str. Paris] gi|53755382|emb|CAH16878.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens] gi|148280327|gb|ABQ54415.1| integration host factor (IHF) alpha subunit [Legionella pneumophila str. Corby] gi|295650259|gb|ADG26106.1| integration host factor (IHF) alpha subunit [Legionella pneumophila 2300/99 Alcoy] gi|307611586|emb|CBX01268.1| hypothetical protein LPW_29661 [Legionella pneumophila 130b] Length = 97 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++++ + +++ E L++ + V F E+ + G+ +K+S F F ++ K R Sbjct: 3 ALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ ++ RRVV FK LK +I Sbjct: 63 GRNPKTGEEIPVEARRVVTFKPGLKLKTKI 92 >gi|313891625|ref|ZP_07825232.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E] gi|329122095|ref|ZP_08250703.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965] gi|313119903|gb|EFR43088.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E] gi|327466902|gb|EGF12418.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965] Length = 92 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ +++KD+ + V + + I D+ V+GE +++ F TF V+++ +R G Sbjct: 1 MNKTELITAVAQKAEMTKKDAEKAVKAVIDVISDAMVKGEKVQLIGFGTFEVRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + +KI + F+ S LK+++ Sbjct: 61 HNPSTQKPIKIPASKAPAFRVSKQLKEKV 89 >gi|171778666|ref|ZP_02919762.1| hypothetical protein STRINF_00614 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|306833010|ref|ZP_07466142.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338] gi|320546358|ref|ZP_08040675.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812] gi|171282623|gb|EDT48047.1| hypothetical protein STRINF_00614 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|304424909|gb|EFM28043.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338] gi|320449012|gb|EFW89738.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812] Length = 91 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAVAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FKA LK Sbjct: 64 PQTGEEIEIAASKVPAFKAGKALK 87 >gi|83644982|ref|YP_433417.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] gi|83633025|gb|ABC28992.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] Length = 90 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +S+ + R + + + ++ +GE + + F TF VK++ +R G Sbjct: 1 MNKSELIDAVAASADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KID +V FKA LK + Sbjct: 61 RNPQTGATIKIDAAKVPSFKAGKALKDAV 89 >gi|117926190|ref|YP_866807.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609946|gb|ABK45401.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +I+ + GL+++ + V +FNEI + +GE +++ F F + + R Sbjct: 1 MTKSELILTIAAQKGLTKQAAAMVVDMVFNEIGKAMAKGERVELRGFGVFEPRARKPRAA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++ + V FK ++KR+ Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >gi|89069006|ref|ZP_01156387.1| integration host factor beta subunit [Oceanicola granulosus HTCC2516] gi|89045375|gb|EAR51440.1| integration host factor beta subunit [Oceanicola granulosus HTCC2516] Length = 93 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D + V T+F+ I + G+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADDNPHLYQRDVEKIVNTVFDRIIGAMANGDRVELRGFGAFSVKRREARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ D Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLND 92 >gi|197121150|ref|YP_002133101.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|220915851|ref|YP_002491155.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196170999|gb|ACG71972.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|219953705|gb|ACL64089.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 115 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F+ + D+ +GE I+I FHVK G Sbjct: 1 MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + P+R ++F+ L+ R+ Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >gi|33152141|ref|NP_873494.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP] gi|33148363|gb|AAP95883.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP] Length = 90 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I + LS+KD+ + N I S G+++++ F TF V ++ R+G Sbjct: 1 MNKTELIDAIVADTALSKKDAKAALEATLNAISGSLKNGDSVQLIGFGTFKVNERSERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +V F A LK Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALK 86 >gi|325288394|ref|YP_004264575.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM 8271] gi|324963795|gb|ADY54574.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM 8271] Length = 90 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ ++KD+ + V + I + G+ +++ F TF VK++ RVG Sbjct: 1 MNKAELVSAVAEKIDFTKKDAEKAVAAVIETISQALAAGDKVQLVGFGTFEVKKREERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I V FKA LK Sbjct: 61 RNPQTKEEIIIPACNVPGFKAGKALK 86 >gi|86157126|ref|YP_463911.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773637|gb|ABC80474.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 116 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F+ + D+ +GE I+I FHVK G Sbjct: 1 MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + P+R ++F+ L+ R+ Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >gi|123430771|ref|XP_001307951.1| DNA-binding protein HU [Trichomonas vaginalis G3] gi|121889606|gb|EAX95021.1| DNA-binding protein HU, putative [Trichomonas vaginalis G3] Length = 92 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++KD+ + + + ++ GE +++ F TF V+Q+ +R G Sbjct: 1 MNKSELVASIAEKSGLTKKDAEQALNGFITSVQEALADGEKVQLVGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90 >gi|320108132|ref|YP_004183722.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] gi|319926653|gb|ADV83728.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] Length = 107 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++ L+R+D V TLF + + + ++I F +F +Q+ SR+G Sbjct: 1 MTKADLVDKVTDLGDLTRRDGEIIVETLFEGVVSALKADDKVEIRGFGSFRTRQRNSRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + V + +RV FK S L+ Sbjct: 61 RNPKTGERVDVPAKRVPFFKPSKELR 86 >gi|52842915|ref|YP_096714.1| integration host factor subunit alpha [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81680386|sp|Q5ZS10|IHFA_LEGPH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|52630026|gb|AAU28767.1| integration host factor (IHF) alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 99 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++++ + +++ E L++ + V F E+ + G+ +K+S F F ++ K R Sbjct: 5 ALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRP 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ ++ RRVV FK LK +I Sbjct: 65 GRNPKTGEEIPVEARRVVTFKPGLKLKTKI 94 >gi|322515115|ref|ZP_08068120.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976] gi|322118880|gb|EFX91067.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976] Length = 90 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ LS+KD+ + I +S +G+A+++ F TF V ++ +R G Sbjct: 1 MNKTELIDAIAAGAELSKKDAKAALEATLEAISESLKKGDAVQLIGFGTFKVNERNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +V F A LK Sbjct: 61 RNPRTGEEIKIAAAKVPAFVAGKALK 86 >gi|269837198|ref|YP_003319426.1| histone family protein DNA-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786461|gb|ACZ38604.1| histone family protein DNA-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 97 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLVK+++++ + V F+ I ++ G+ + I+ F TF + ++G+R GRN Sbjct: 3 KSDLVKAVARKVQQPESHVSTVVNATFDAIREALASGDEVAITGFGTFRISERGAREGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + + I RR FK + LK+ + Sbjct: 63 PQTGERITIPSRRSPSFKPGTQLKRAV 89 >gi|238899357|ref|YP_002925039.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467118|gb|ACQ68891.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 113 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + GL++ ST VT +F+ I DS + E ++I FATF V + R+ Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 R+ +T +++K R V VF A LK Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLK 86 >gi|229106597|ref|ZP_04236839.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|228676835|gb|EEL31439.1| DNA-binding protein HU [Bacillus cereus Rock3-28] Length = 93 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K ++ + L++KD+ + + I ++ E ++I F TF V+++ +R G Sbjct: 4 MNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEIQIAASKAPAFKAGKELKEAV 92 >gi|121610067|ref|YP_997874.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] gi|121554707|gb|ABM58856.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 112 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++TRSDLV+ ++ L+R D+ V + + + + VRG I+I F +F V R Sbjct: 5 SMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN ++ + V I +RV FK L++ + Sbjct: 65 MGRNPRSGEAVAIPQKRVPHFKPGKALREAV 95 >gi|3334235|sp|P95516|IHFA_PASHA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1842235|gb|AAC44843.1| integration host factor Alpha subunit [Mannheimia haemolytica] Length = 99 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 57/90 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ ++FGL ++ + FV F EI S GE +K+S F F +++K +R Sbjct: 3 ALTKIEIAENLIEKFGLEKRVANEFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFKA L++R+ Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERV 92 >gi|304415444|ref|ZP_07396093.1| integration host factor (IHF) DNA-binding protein alpha subunit [Candidatus Regiella insecticola LSR1] gi|304282708|gb|EFL91222.1| integration host factor (IHF) DNA-binding protein alpha subunit [Candidatus Regiella insecticola LSR1] Length = 97 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ ++++++ G+ + + + V + F+EIC +K+S F F V+ K R Sbjct: 2 ALTKDNIAENLTEKLGIDKPVAKQLVESFFDEICLILKEERELKVSKFGNFVVRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + + I R VV FK+ LKK + Sbjct: 62 GRNPKTGEGIPISARSVVTFKSGQRLKKEV 91 >gi|116629549|ref|YP_814721.1| nucleoid DNA-binding protein [Lactobacillus gasseri ATCC 33323] gi|238852699|ref|ZP_04643109.1| DNA-binding protein HU [Lactobacillus gasseri 202-4] gi|282852068|ref|ZP_06261426.1| DNA-binding protein HU [Lactobacillus gasseri 224-1] gi|300361578|ref|ZP_07057755.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03] gi|311110808|ref|ZP_07712205.1| DNA-binding protein HU [Lactobacillus gasseri MV-22] gi|116095131|gb|ABJ60283.1| bacterial nucleoid protein Hbs [Lactobacillus gasseri ATCC 33323] gi|238834845|gb|EEQ27072.1| DNA-binding protein HU [Lactobacillus gasseri 202-4] gi|282556828|gb|EFB62432.1| DNA-binding protein HU [Lactobacillus gasseri 224-1] gi|300354197|gb|EFJ70068.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03] gi|311065962|gb|EFQ46302.1| DNA-binding protein HU [Lactobacillus gasseri MV-22] Length = 91 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K+ V +F+ I + +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVAAKTDLTKKEVAAAVDAIFSSIQEDLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALK 87 >gi|46199286|ref|YP_004953.1| putative DNA binding protein [Thermus thermophilus HB27] gi|55981318|ref|YP_144615.1| DNA-binding protein HU [Thermus thermophilus HB8] gi|46196911|gb|AAS81326.1| putative DNA binding protein [Thermus thermophilus HB27] gi|55772731|dbj|BAD71172.1| DNA-binding protein HU (DNA-binding protein II) [Thermus thermophilus HB8] Length = 97 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL +KD V L ++ ++ G ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK ++ Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 95 >gi|229170573|ref|ZP_04298221.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228612922|gb|EEK70099.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 93 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I ++ E ++I F TF V+++ +R G Sbjct: 4 MNKTELTKMVAEKAELTQKDAAVATQAVLDAITNALANEEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK + Sbjct: 64 RNPQTGEEMQIAASKVPAFKAGKELKAAV 92 >gi|93006477|ref|YP_580914.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] gi|92394155|gb|ABE75430.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] Length = 90 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+++ GL++ + + + + ++ G++I + F TF VK + +R G Sbjct: 1 MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I +V FKA LK+R+ Sbjct: 61 RNPKTGEELSIPASKVPSFKAGKNLKERL 89 >gi|254470707|ref|ZP_05084110.1| integration host factor, beta subunit [Pseudovibrio sp. JE062] gi|211959849|gb|EEA95046.1| integration host factor, beta subunit [Pseudovibrio sp. JE062] Length = 99 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++I+ + L ++D V + +E+ ++ +RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQTIAERNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T Q+V++ + V FK +++R+ D Sbjct: 61 GRNPRTGQKVEVGEKFVPFFKTGKEMRERLND 92 >gi|188584712|ref|YP_001916257.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349399|gb|ACB83669.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF] Length = 92 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ +++KD+ + V +F+ I D + + +++ F TF V+++ +R G Sbjct: 1 MNKTELISKVAERSEMTKKDTEKVVNEVFDVISDQLAKEDKVQLIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I+ +V FKA LK+++ Sbjct: 61 RNPSTGEVIQIEATKVPAFKAGKALKEKV 89 >gi|332971263|gb|EGK10226.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 91 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 53/87 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K +++E G S+ ++ + V + ++I ++ RGE + + F F V+++ +R+ Sbjct: 1 MNKTELTKRVAQETGKSKTEAGQMVDVVLDQISEALQRGEKVSLFGFGNFEVRERAARMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T + + ++ +R+ FK LK+ Sbjct: 61 RNPKTGETIHVEAKRIPAFKPGKQLKE 87 >gi|15616661|ref|NP_239873.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681974|ref|YP_002468358.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11131509|sp|P57144|DBH_BUCAI RecName: Full=DNA-binding protein HU gi|25294374|pir||G84933 DNA-binding protein hu-alpha [imported] - Buchnera sp. (strain APS) gi|10038724|dbj|BAB12759.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621707|gb|ACL29863.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085779|gb|ADP65861.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086354|gb|ADP66435.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086932|gb|ADP67012.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087520|gb|ADP67599.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 92 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ISK+ LS+ + + T + I DS +GE+++I F TF V + SR G Sbjct: 1 MNKTQLINVISKKSNLSKIQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V F + LK I Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAI 89 >gi|323136116|ref|ZP_08071199.1| integration host factor, beta subunit [Methylocystis sp. ATCC 49242] gi|322399207|gb|EFY01726.1| integration host factor, beta subunit [Methylocystis sp. ATCC 49242] Length = 96 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++ G L ++D V+T+ +EI + RG+ +++ F F VK++ +R Sbjct: 1 MIKSELIQRIARRNGHLYQRDVETIVSTILDEITAALARGDRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +V + + V FK +++R+ ++ +G Sbjct: 61 GRNPRTGAQVSVQEKSVPFFKTGKEMRERLNENYQG 96 >gi|261492544|ref|ZP_05989097.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311703|gb|EEY12853.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 99 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 58/90 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ ++FGL ++ + +FV F EI S GE +K+S F F +++K +R Sbjct: 3 ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFKA L++R+ Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERV 92 >gi|148653424|ref|YP_001280517.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] gi|148572508|gb|ABQ94567.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++ + + + + ++ + I + F TF VK++ +R G Sbjct: 1 MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I RV FKA LK R+ Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRL 89 >gi|295694764|ref|YP_003588002.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] gi|295410366|gb|ADG04858.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] Length = 87 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 50/83 (60%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L+ +++ GL +K++ V ++F+ I ++ GE +++ F TF +++ +R+GRN Q Sbjct: 2 ELIAKVAERSGLKKKEAEAAVNSVFDVIGEALAGGEKVQLVGFGTFEPRRRAARIGRNPQ 61 Query: 69 TNQEVKIDPRRVVVFKASSILKK 91 T +E+ I V FK + LK+ Sbjct: 62 TGEEISIPESVVPAFKPGNKLKE 84 >gi|238897931|ref|YP_002923611.1| HU, DNA-binding transcriptional regulator, alpha subunit-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|238898508|ref|YP_002924189.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465689|gb|ACQ67463.1| HU, DNA-binding transcriptional regulator, alpha subunit-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466267|gb|ACQ68041.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 119 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + GL++ ST VT +F+ I ++ + E ++I F TF V+ + R+ Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +++K R V VF A LK Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLK 86 >gi|120556663|ref|YP_961014.1| histone family protein DNA-binding protein [Marinobacter aquaeolei VT8] gi|120326512|gb|ABM20827.1| histone family protein DNA-binding protein [Marinobacter aquaeolei VT8] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 49/87 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+ + GL+R+ + + +++ +A RGE + + F TF+++ + +R GRN Sbjct: 3 KPELAAAIADKTGLTREKAGEVINAFTDQVSAAAARGEDVTLIGFGTFNIRSREARNGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT ++I + V FKA LK I Sbjct: 63 PQTGASIQIPASKTVGFKAGKALKDAI 89 >gi|242347958|ref|YP_002995519.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila] gi|224831777|gb|ACN66908.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TFHVK + +R G Sbjct: 1 MNKSELIMKVAEDADISKAQAEAAVNALINSVTEELKSGGTVALTGFGTFHVKARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDTV 89 >gi|160878293|ref|YP_001557261.1| histone family protein DNA-binding protein [Clostridium phytofermentans ISDg] gi|160426959|gb|ABX40522.1| histone family protein DNA-binding protein [Clostridium phytofermentans ISDg] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KDS + + + + + +GE +++ F TF V + +R G Sbjct: 1 MNKAELVAAIAEKTELSKKDSEKALKAFIDVVTEELTKGEKVQLVGFGTFEVSARPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT Q + I + FKA LK Sbjct: 61 RNPQTKQTITIAASKAPKFKAGKALK 86 >gi|332971724|gb|EGK10672.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ +++ G ++K+S V + + I ++ GE + + F F V+++ +R G Sbjct: 1 MNKTELIERVAESTGKTKKESAHLVEAVLDSIAEALRNGEKVSLIGFGNFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I +V FK LK+ + Sbjct: 61 RNPQTGEPIEIGASKVPAFKPGKQLKEAV 89 >gi|90962747|ref|YP_536662.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] gi|90821941|gb|ABE00579.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+++ G ++K++ V+ + ++ V G+ ++I F F V+++ +R G Sbjct: 1 MNKNELVEAIAEKMGATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLK 86 >gi|320537407|ref|ZP_08037357.1| putative integration host factor subunit alpha [Treponema phagedenis F0421] gi|320145733|gb|EFW37399.1| putative integration host factor subunit alpha [Treponema phagedenis F0421] Length = 103 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 TR+ L I ++FG + + V +L E+ + RGE I++ +F F ++ + S +GR Sbjct: 7 TRASLTDLIYRKFGYDYRITATIVDSLIEEMASALKRGETIELRNFGVFELQHRKSSIGR 66 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N+ VKI R VV F+ L++ + D Sbjct: 67 NISAGTAVKIPERYVVAFRPGKNLREAVKD 96 >gi|114799692|ref|YP_759440.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] gi|114739866|gb|ABI77991.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] Length = 88 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L K+++ GLS+ D+ + V LF + +A + + I+ F TF K + +R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + +KI + + FK +S LK Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALK 86 >gi|171057653|ref|YP_001790002.1| integration host factor subunit beta [Leptothrix cholodnii SP-6] gi|170775098|gb|ACB33237.1| integration host factor, beta subunit [Leptothrix cholodnii SP-6] Length = 112 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV +++ F L+ +D+ V T+ + + D+ RG I+I F +F + ++ RV Sbjct: 1 MTRSDLVALLAERFSQLTHRDAEFAVKTMLDAMSDALARGHRIEIRGFGSFAINRRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V I + V FK L++ + Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90 >gi|254362042|ref|ZP_04978168.1| integration host factor alpha subunit [Mannheimia haemolytica PHL213] gi|261495203|ref|ZP_05991665.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093596|gb|EDN74564.1| integration host factor alpha subunit [Mannheimia haemolytica PHL213] gi|261309128|gb|EEY10369.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 98 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 58/90 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ ++FGL ++ + +FV F EI S GE +K+S F F +++K +R Sbjct: 2 ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFKA L++R+ Sbjct: 62 GRNPKTGENVAVSARRVVVFKAGQKLRERV 91 >gi|62296616|sp|P19436|DBH_THET8 RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=TL29 Length = 96 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL +KD V L ++ ++ G ++++ F TF V+++ +R Sbjct: 4 KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK ++ Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 94 >gi|238855192|ref|ZP_04645511.1| DNA-binding protein HU [Lactobacillus jensenii 269-3] gi|260664555|ref|ZP_05865407.1| integration host factor, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|282932514|ref|ZP_06337939.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] gi|313471979|ref|ZP_07812471.1| DNA-binding protein HU [Lactobacillus jensenii 1153] gi|238832084|gb|EEQ24402.1| DNA-binding protein HU [Lactobacillus jensenii 269-3] gi|239529089|gb|EEQ68090.1| DNA-binding protein HU [Lactobacillus jensenii 1153] gi|260561620|gb|EEX27592.1| integration host factor, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|281303463|gb|EFA95640.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++KD V +F I + +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVAEVAAKTKLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALK 87 >gi|238897499|ref|YP_002923178.1| HU, DNA-binding transcriptional regulator, alpha subunit-1 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465256|gb|ACQ67030.1| HU, DNA-binding transcriptional regulator, alpha subunit-1 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 113 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + GL++ ST VT +F+ I ++ + E ++I F TF V+ + R+ Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +++K R V VF A LK Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLK 86 >gi|39933146|ref|NP_945422.1| integration host factor subunit beta [Rhodopseudomonas palustris CGA009] gi|192288502|ref|YP_001989107.1| integration host factor subunit beta [Rhodopseudomonas palustris TIE-1] gi|81698457|sp|Q6NDN9|IHFB_RHOPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709804|sp|B3Q602|IHFB_RHOPT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|39652771|emb|CAE25510.1| integration host factor beta chain [Rhodopseudomonas palustris CGA009] gi|192282251|gb|ACE98631.1| integration host factor, beta subunit [Rhodopseudomonas palustris TIE-1] Length = 104 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRD 93 >gi|312898729|ref|ZP_07758118.1| putative integration host factor, beta subunit [Megasphaera micronuciformis F0359] gi|310620160|gb|EFQ03731.1| putative integration host factor, beta subunit [Megasphaera micronuciformis F0359] Length = 92 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F + ++ +G+ ++I F TF V+ + +R G Sbjct: 1 MNKTELIASVAQKSDLTKKDAEKAVKAVFEAVSETLKKGDKVQIIGFGTFEVRARKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN + N+ +KI + FKA LK Sbjct: 61 RNPRNNEVIKIPASKTPAFKAGKQLK 86 >gi|32034579|ref|ZP_00134735.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207602|ref|YP_001052827.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae L20] gi|165975570|ref|YP_001651163.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149383|ref|YP_001967908.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249818|ref|ZP_07336022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251938|ref|ZP_07338109.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244922|ref|ZP_07527019.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247097|ref|ZP_07529149.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249318|ref|ZP_07531312.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251641|ref|ZP_07533546.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253876|ref|ZP_07535728.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256139|ref|ZP_07537926.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258330|ref|ZP_07540071.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260571|ref|ZP_07542263.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262701|ref|ZP_07544329.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096394|gb|ABN73222.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875671|gb|ABY68719.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914514|gb|ACE60766.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649368|gb|EFL79553.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651385|gb|EFL81537.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854087|gb|EFM86295.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856346|gb|EFM88497.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858612|gb|EFM90674.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860838|gb|EFM92846.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863080|gb|EFM95022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865320|gb|EFM97216.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867514|gb|EFM99361.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869648|gb|EFN01433.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871956|gb|EFN03672.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ LS+KD+ + N I +S G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIDAIAAGAELSKKDAKAALEATLNAISESLKNGDTVQLIGFGTFKVNERNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +V F A LK Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALK 86 >gi|325678265|ref|ZP_08157893.1| DNA-binding protein HU-beta [Ruminococcus albus 8] gi|324110028|gb|EGC04216.1| DNA-binding protein HU-beta [Ruminococcus albus 8] Length = 92 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ G S+K++ + + + + I D+ +GE + + F TF V+ + ++V Sbjct: 1 MNKAELINVIAEKGGYSKKEADKALAAVLDSITDALEKGEKVTLVGFGTFEVRDRAAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T V + R+V FKA S LK + Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALKAAV 89 >gi|127513433|ref|YP_001094630.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] gi|126638728|gb|ABO24371.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFISAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89 >gi|313679460|ref|YP_004057199.1| bacterial nucleoid protein hbs [Oceanithermus profundus DSM 14977] gi|313152175|gb|ADR36026.1| bacterial nucleoid protein Hbs [Oceanithermus profundus DSM 14977] Length = 98 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 52/91 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T+SDLV +++ GL +KD+ + T +EI R ++++ F TF V+++ +R Sbjct: 6 KTVTKSDLVNHVAEITGLKKKDAKACIDTFLDEIATFLDRDYKVQLTGFGTFEVRKRKAR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK+++ Sbjct: 66 TGVKPGTTEKIKIPASKYPAFKPGKALKEKV 96 >gi|227892106|ref|ZP_04009911.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] gi|301300365|ref|ZP_07206569.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866089|gb|EEJ73510.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] gi|300852049|gb|EFK79729.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 53/86 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+++ G ++K++ V+ + ++ V G+ ++I F F V+++ +R G Sbjct: 1 MNKNELVEAIAEKMGTTKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FK LK Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLK 86 >gi|134288835|ref|YP_001111235.1| gp35 [Burkholderia phage phiE255] gi|134132171|gb|ABO60692.1| gp35 [Burkholderia phage phiE255] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++ E GL++ DS + + I S +G+ + ++ F F V + +R G Sbjct: 1 MNKSDLINHVAAETGLTKADSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +E+KI + FKA LK + Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >gi|329117127|ref|ZP_08245844.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020] gi|326907532|gb|EGE54446.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLSEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FKA LK Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87 >gi|291521609|emb|CBK79902.1| Bacterial nucleoid DNA-binding protein [Coprococcus catus GD/7] Length = 91 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+ + D+ + + + + D V+GE I++ F TF V ++ R G Sbjct: 1 MNKAELVAAMAEKTGMKKNDAEKALKAFVDVVTDELVKGEKIQLVGFGTFEVSERPEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI + FKA LK I Sbjct: 61 RNPRTGETMKIAASKAPKFKAGKALKDMI 89 >gi|190015583|ref|YP_001967304.1| DNA-binding protein HU [Bacillus cereus] gi|208702183|ref|YP_002267334.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97] gi|217956824|ref|YP_002335918.1| DNA-binding protein HU 1 [Bacillus cereus AH187] gi|229142798|ref|ZP_04271251.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|116584490|gb|ABK00607.1| DNA-binding protein HU [Bacillus cereus] gi|208658038|gb|ACI30408.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97] gi|217068469|gb|ACJ82717.1| DNA-binding protein HU 1 [Bacillus cereus AH187] gi|228640666|gb|EEK97044.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] Length = 90 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL K I+++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTDLTKVIAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + FKA LK Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86 >gi|254437270|ref|ZP_05050764.1| integration host factor, beta subunit [Octadecabacter antarcticus 307] gi|198252716|gb|EDY77030.1| integration host factor, beta subunit [Octadecabacter antarcticus 307] Length = 93 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L +I+++ L ++D R V T+F + ++ G+ +++ F F VK++ +R+ Sbjct: 1 MIRSELTDTIAEQNPHLYQRDVERIVNTIFERVIEAMSNGDRVELRGFGAFSVKKRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRL 90 >gi|325142000|gb|EGC64435.1| integration host factor subunit alpha [Neisseria meningitidis 961-5945] Length = 72 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 34/59 (57%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 F EI + GE IKIS F F ++ K R GRN +T +EV I RRVV F AS LK Sbjct: 3 FFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLK 61 >gi|77919056|ref|YP_356871.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380] gi|77545139|gb|ABA88701.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380] Length = 92 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++++ GL+ K + V + + + D+ V G I+I F + VK + +G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+++ P+++ FK L++RI Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERI 89 >gi|229077218|ref|ZP_04209912.1| DNA-binding protein HU [Bacillus cereus Rock4-18] gi|229119652|ref|ZP_04248924.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228663818|gb|EEL19387.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228706049|gb|EEL58344.1| DNA-binding protein HU [Bacillus cereus Rock4-18] Length = 93 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K ++ + L++KD+ + + I ++ E ++I F TF V+++ +R G Sbjct: 4 MNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|326795822|ref|YP_004313642.1| histone family protein DNA-binding protein [Marinomonas mediterranea MMB-1] gi|326546586|gb|ADZ91806.1| histone family protein DNA-binding protein [Marinomonas mediterranea MMB-1] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ ++ + I ++ V+G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADLSKAAASNALDATLKTIEEALVKGDQVTLVGFGTFQVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIKAAKVPSFKAGKGLKDAV 89 >gi|294141765|ref|YP_003557743.1| HU family DNA-binding protein [Shewanella violacea DSS12] gi|293328234|dbj|BAJ02965.1| DNA-binding protein, HU family [Shewanella violacea DSS12] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI + FKA LK + Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAV 89 >gi|91974676|ref|YP_567335.1| integration host factor subunit beta [Rhodopseudomonas palustris BisB5] gi|123722247|sp|Q13EQ5|IHFB_RHOPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91681132|gb|ABE37434.1| integration host factor, beta subunit [Rhodopseudomonas palustris BisB5] Length = 101 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V +D + V FK +++R+ Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERL 90 >gi|226946415|ref|YP_002801488.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226721342|gb|ACO80513.1| histone-like bacterial DNA-binding protein, hupB family [Azotobacter vinelandii DJ] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S+S L + +T+ V L I G + + F TF VK++ +R G Sbjct: 1 MNKSELIASVSTHADLDKNTATKVVNALLETITAELKAGHEVGLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGKEIEIAAAKTPGFKAGKGLKEAV 89 >gi|117921099|ref|YP_870291.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] gi|117613431|gb|ABK48885.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+++ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT QE+KI ++ FKA LK Sbjct: 61 RNPQTGQEIKIAAAKIPAFKAGKALK 86 >gi|323487339|ref|ZP_08092639.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum WAL-14163] gi|323694222|ref|ZP_08108398.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673] gi|323399384|gb|EGA91782.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum WAL-14163] gi|323501695|gb|EGB17581.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673] Length = 91 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + + + + D V+GE I++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAIKAFTDVVSDELVKGEKIQLVGFGTFEVAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + FKA LK Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALK 86 >gi|262372261|ref|ZP_06065540.1| integration host factor, beta subunit [Acinetobacter junii SH205] gi|262312286|gb|EEY93371.1| integration host factor, beta subunit [Acinetobacter junii SH205] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ G+S+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FK LK + Sbjct: 61 RNPKTGEELQIKASKVPSFKPGKGLKDSV 89 >gi|330994450|ref|ZP_08318375.1| Integration host factor subunit beta [Gluconacetobacter sp. SXCC-1] gi|329758450|gb|EGG74969.1| Integration host factor subunit beta [Gluconacetobacter sp. SXCC-1] Length = 105 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ L ++ R V +F E+ ++ +RG+ +++ F F VK++ +R Sbjct: 8 MTRSELIAELAAARPHLPVREVERIVQVIFAEVSNALMRGDRVELRGFGAFTVKKRDART 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + V FKA L++R+ Sbjct: 68 GRNPRTGETVSVDEKVVPFFKAGKELRERV 97 >gi|209964552|ref|YP_002297467.1| DNA-binding protein HupA [Rhodospirillum centenum SW] gi|209958018|gb|ACI98654.1| DNA-binding protein HupA [Rhodospirillum centenum SW] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++++ GLS+ D+ + V +F+ I + +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLVAAVAEAAGLSKADANKAVDAVFDGITSALTKGDEVRLVGFGTFGVAERAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +++ I + FKA LK Sbjct: 61 RNPRTGEKISIPASKQPKFKAGKGLK 86 >gi|86747764|ref|YP_484260.1| integration host factor subunit beta [Rhodopseudomonas palustris HaA2] gi|123004672|sp|Q2J2G1|IHFB_RHOP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|86570792|gb|ABD05349.1| integration host factor, beta subunit [Rhodopseudomonas palustris HaA2] Length = 101 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V +D + V FK +++R+ Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERL 90 >gi|194337655|ref|YP_002019449.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310132|gb|ACF44832.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 91 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + L++ D+ R V N + DS G+ + + F TF V ++ R+G Sbjct: 1 MSKAELVEKIADQAKLTKVDAERAVNAFINVVIDSLKDGDDVTLVGFGTFAVGKRAERLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + VV FK L+ I Sbjct: 61 RNPQTGEAITIAAKNVVKFKPGKALRDGI 89 >gi|262376135|ref|ZP_06069365.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145] gi|262308736|gb|EEY89869.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + + ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGLSKADAGKALDATIASVTEALKSGDTVTLVGFGTFGVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDAV 89 >gi|238026976|ref|YP_002911207.1| putative dna-binding protein hu-beta [Burkholderia glumae BGR1] gi|237876170|gb|ACR28503.1| Probable dna-binding protein hu-beta [Burkholderia glumae BGR1] Length = 90 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I++E LS+ + R + L + + G ++ ++ F TF V ++ +R G Sbjct: 1 MNKTDLIDHIAREADLSKASAGRALDALIGGVMQALESGGSVTLAGFGTFEVGERIARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + ++I+ RV F+A LK Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALK 86 >gi|302669370|ref|YP_003832520.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302397034|gb|ADL35938.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 94 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+KE GLS+KDS + V + + +++ F TF ++ +R G Sbjct: 1 MNKTELVDAIAKETGLSKKDSEKAVKAFTEAVSKELKKKGKVQLVGFGTFETAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +N QT +KI V FKA LK D + G+K Sbjct: 61 KNPQTGAAIKIPAATVPKFKAGKALK----DAVNGKK 93 >gi|42522297|ref|NP_967677.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100] gi|39574828|emb|CAE78670.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100] Length = 97 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ IS++ G++R + V T+F+ + ++ +R + I+I F +F +Q G+ G Sbjct: 1 MTKADLINLISEKAGITRVKAETVVNTIFDSMVEALMRDDRIEIRGFGSFVNRQYGAYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + +D +++ FK LK+ I Sbjct: 61 RNPRTGEIINVDEKKLPFFKVGKELKEDI 89 >gi|255009412|ref|ZP_05281538.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis 3_1_12] gi|313147171|ref|ZP_07809364.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313135938|gb|EFR53298.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 96 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +S+ G + KD++ +TTL ++I G AI I F F VK+K R+ N Sbjct: 5 EFTSELSRRLGYNTKDTSDLITTLLSDIIQELQEGNAIGIQGFGAFEVKKKAERIVINPV 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 T + + P+ V+ FK S ILK + Sbjct: 65 TRLRLLVPPKLVLAFKPSPILKDK 88 >gi|307546664|ref|YP_003899143.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581] gi|307218688|emb|CBV43958.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581] Length = 91 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK I+ LS+ + R +T + + + +G+ + + F TF +++ +R G Sbjct: 1 MNKSELVKQIATTAELSQAQAERCLTAFTDSVAKTLSQGDKLTLLGFGTFETRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGEEMTIPAAKVPAFKAGQGLKDAV 89 >gi|297624967|ref|YP_003706401.1| histone family protein DNA-binding protein [Truepera radiovictrix DSM 17093] gi|297166147|gb|ADI15858.1| histone family protein DNA-binding protein [Truepera radiovictrix DSM 17093] Length = 99 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT++++DLV ++++ G+ +KD V T+ +++ G+ ++++ F TF V+++ + Sbjct: 4 AKTVSKADLVDKVAEDTGMRKKDVKTIVDTMIDQVSQHLNNGDKVQLTGFGTFEVRERRA 63 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R G T + ++I + FK LK++I Sbjct: 64 RTGVKPGTTERIEIPASKYPAFKPGKALKEKI 95 >gi|225571163|ref|ZP_03780161.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM 15053] gi|225159994|gb|EEG72613.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM 15053] Length = 91 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KDS + + + I +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEQAELSKKDSEKALKAFVDVITAELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI + FKA LK Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALK 86 >gi|332527560|ref|ZP_08403607.1| putative integration host factor subunit beta (ihf-beta) protein [Rubrivivax benzoatilyticus JA2] gi|332111963|gb|EGJ11940.1| putative integration host factor subunit beta (ihf-beta) protein [Rubrivivax benzoatilyticus JA2] Length = 103 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV +++ F L+++D+ V T+ + + D+ RG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVARLAERFSQLTQRDTEFAVKTILDAMTDALARGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V I + V FK L++ + Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90 >gi|308271747|emb|CBX28355.1| Integration host factor subunit beta [uncultured Desulfobacterium sp.] Length = 92 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +I + +S+ ++ R V F+ + D+ G+ I+I +F+VK S G Sbjct: 1 MNKLELISAIKDKANISKAEAARVVQIFFDSMTDAMANGDRIEIRGLCSFYVKNYKSYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V I P+++ FK+ LK+R+ Sbjct: 61 RNPKTGKKVVIKPKKLPFFKSGKELKERV 89 >gi|308049131|ref|YP_003912697.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] gi|307631321|gb|ADN75623.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] Length = 93 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R L+K +++ +S+ + R + L N I + GE + + F V+ R G Sbjct: 1 MNRQQLIKRMAELSEMSQAECKRVLAALENTIAQALHEGETVYLPPLGVFEVRHHLPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + ++I R V FKA++ LKK + + Sbjct: 61 RNPQTGETIEIPLRTVPAFKAAAPLKKAVAEQ 92 >gi|304320496|ref|YP_003854139.1| integration host factor beta chain [Parvularcula bermudensis HTCC2503] gi|303299398|gb|ADM08997.1| integration host factor beta chain [Parvularcula bermudensis HTCC2503] Length = 113 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 9/107 (8%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ E L KD + V+ +F+ I + +G+ +++ F TF VK + +R Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 GRN +T + V+++ + V FKA +MR R K D+ +P Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGK--------EMRERLNKKTDLVAP 99 >gi|259500655|ref|ZP_05743557.1| DNA-binding protein HU [Lactobacillus iners DSM 13335] gi|302191344|ref|ZP_07267598.1| DNA-binding protein HU [Lactobacillus iners AB-1] gi|309804184|ref|ZP_07698262.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d] gi|309805716|ref|ZP_07699756.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c] gi|309806743|ref|ZP_07700737.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b] gi|309809245|ref|ZP_07703114.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D] gi|312871445|ref|ZP_07731540.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a] gi|312872380|ref|ZP_07732450.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1] gi|312873981|ref|ZP_07734017.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d] gi|312875460|ref|ZP_07735463.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b] gi|315653510|ref|ZP_07906431.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195] gi|325912002|ref|ZP_08174404.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D] gi|325912845|ref|ZP_08175223.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B] gi|329921293|ref|ZP_08277731.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G] gi|259168039|gb|EEW52534.1| DNA-binding protein HU [Lactobacillus iners DSM 13335] gi|308163767|gb|EFO66036.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d] gi|308164969|gb|EFO67212.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c] gi|308166858|gb|EFO69043.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b] gi|308170358|gb|EFO72382.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D] gi|311088971|gb|EFQ47412.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b] gi|311090530|gb|EFQ48938.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d] gi|311092203|gb|EFQ50577.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1] gi|311093098|gb|EFQ51447.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a] gi|315489201|gb|EFU78842.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195] gi|325476187|gb|EGC79351.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D] gi|325477838|gb|EGC80972.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B] gi|328934585|gb|EGG31089.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G] Length = 91 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DLV ++ LS+K++ V +FN + ++ + E +++ F TF V+++ +R GRN Sbjct: 4 KADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT E++I +V FK LK+ + Sbjct: 64 PQTGAEIEIPASKVPAFKPGKALKEAV 90 >gi|317968906|ref|ZP_07970296.1| DNA-binding protein HU [Synechococcus sp. CB0205] Length = 91 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T Q++KI +RV F A + K R+ Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKLFKDRV 89 >gi|270160386|ref|ZP_06189035.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|308051556|ref|YP_003915130.1| HU, DNA-binding transcriptional regulator, beta subunit [Legionella longbeachae NSW150] gi|269987096|gb|EEZ93358.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|288859981|emb|CBJ13969.1| HU, DNA-binding transcriptional regulator, beta subunit [Legionella longbeachae NSW150] Length = 92 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +IS GLS+ DS + + + + + +G++I + FA+ VK+ +R G Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T Q ++I +VV FK + LK+ I Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAI 89 >gi|332971083|gb|EGK10053.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 90 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+++ G+++KD V E+ + GE +++ F TF +++ R G Sbjct: 1 MNKNDLIHNIAQKSGMTKKDVETVVNGFLEEVTHALGSGEKVQLIGFGTFETRKRSGRSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I V FKA + LK+ + Sbjct: 61 RNPQTGAVIEIPESTVPAFKAGTRLKEAV 89 >gi|294084820|ref|YP_003551580.1| integration host factor subunit beta [Candidatus Puniceispirillum marinum IMCC1322] gi|292664395|gb|ADE39496.1| integration host factor, beta subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 92 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ K L +D R V T+ +EI + RG+ +++ F F V+ + +R+ Sbjct: 1 MTRSELIARMAAKNPALYHRDIERLVGTILDEISGALERGDRVELRGFGAFSVRHRKARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++ ++V FK +++R+ Sbjct: 61 GRNPRTGTSVQVAEKKVPFFKMGKGMRERL 90 >gi|237834245|ref|XP_002366420.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49] gi|211964084|gb|EEA99279.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49] Length = 235 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 55/103 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR DLV S++ E + R + + V+ I S +G+ + +S F + ++++G RV Sbjct: 121 VTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN +T +++ + F S +LK ++ + + + +++D Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223 >gi|221508402|gb|EEE33989.1| DNA-binding protein HU, putative [Toxoplasma gondii VEG] Length = 235 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 55/104 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR DLV S++ E + R + + V+ I S +G+ + +S F + ++++G RV Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN +T +++ + F S +LK ++ + + + +++D Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223 >gi|167855819|ref|ZP_02478571.1| DNA-binding protein HU [Haemophilus parasuis 29755] gi|219871002|ref|YP_002475377.1| DNA-binding protein HU/transcriptional regulator [Haemophilus parasuis SH0165] gi|167853032|gb|EDS24294.1| DNA-binding protein HU [Haemophilus parasuis 29755] gi|219691206|gb|ACL32429.1| DNA-binding protein HU/transcriptional regulator [Haemophilus parasuis SH0165] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ LS+KD+ + N I +S +G+++++ F TF V + +R G Sbjct: 1 MNKTELVDAIAAGADLSKKDAKAALEATLNAISESLKKGDSVQLIGFGTFKVNHRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +TN+ ++I V F A LK Sbjct: 61 RNPKTNEAIEIPAANVPAFVAGKALK 86 >gi|302388378|ref|YP_003824200.1| histone family protein DNA-binding protein [Clostridium saccharolyticum WM1] gi|302199006|gb|ADL06577.1| histone family protein DNA-binding protein [Clostridium saccharolyticum WM1] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V L + I + V+GE I++ F TF V ++ +R G Sbjct: 1 MNKAELIAAVAEKAELSKKDAEKAVKALTDVISEELVKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN ++ + + I + FKA LK Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALK 86 >gi|296447327|ref|ZP_06889255.1| integration host factor, beta subunit [Methylosinus trichosporium OB3b] gi|296255192|gb|EFH02291.1| integration host factor, beta subunit [Methylosinus trichosporium OB3b] Length = 96 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ G L ++D VTT+ +EI + RG+ +++ F F VK++ +R Sbjct: 1 MIKSELIQRIASRNGHLYQRDVETIVTTILDEIALALARGDRVELRGFGAFSVKRREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T ++V ++ + V FK +++R+ + G Sbjct: 61 GRNPRTGEQVSVEEKSVPFFKTGKEMRERLNETSNG 96 >gi|302391837|ref|YP_003827657.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM 5501] gi|302203914|gb|ADL12592.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM 5501] Length = 99 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 10/98 (10%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA---------IKISSFATFH 55 +T+++LV I+ + GL++KD T+ F E+ ++ EA +++ F +F Sbjct: 1 MTKTELVDRIADKTGLTKKD-TKETVDAFTEVVTETLQEEANKDEDERDKVQLIGFGSFE 59 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 V+ + +R GRN QT +E++I R+V FKA LK+ + Sbjct: 60 VRDRSARKGRNPQTGEEIEIPARKVPAFKAGKGLKEAV 97 >gi|323489683|ref|ZP_08094910.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus donghaensis MPA1U2] gi|323396814|gb|EGA89633.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus donghaensis MPA1U2] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+++ LSRKD+ + V F I D+ +GE +++ F F V+++ +R G Sbjct: 1 MNKTELVNSVAEAAELSRKDAAKAVDAAFETIQDALTKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I +V FK LK Sbjct: 61 RNPQTGAEIEIAASKVPAFKPGKALK 86 >gi|170727450|ref|YP_001761476.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] gi|169812797|gb|ACA87381.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIEAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI + FKA LK + Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAV 89 >gi|228476872|ref|ZP_04061517.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126] gi|322372800|ref|ZP_08047336.1| DNA-binding protein HU [Streptococcus sp. C150] gi|228251446|gb|EEK10591.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126] gi|321277842|gb|EFX54911.1| DNA-binding protein HU [Streptococcus sp. C150] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F I + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + + I +V FKA LK + Sbjct: 64 PQTGEAISIAASKVPAFKAGKALKDAV 90 >gi|221486645|gb|EEE24906.1| DNA-binding protein HU, putative [Toxoplasma gondii GT1] Length = 235 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/104 (24%), Positives = 55/104 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR DLV S++ E + R + + V+ I S +G+ + +S F + ++++G RV Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN +T +++ + F S +LK ++ + + + +++D Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223 >gi|195953425|ref|YP_002121715.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195933037|gb|ACG57737.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 89 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ +++ + + V +F+ + +S + E I F TF V + +R G Sbjct: 1 MTKTELVSYVAQQADITKAKAEKCVNAVFSALAESLKKKERTTIPGFGTFTVSTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T QE+KI R V++ S LKK Sbjct: 61 RNPKTGQEIKIPARTTAVWRPSKELKK 87 >gi|295105343|emb|CBL02887.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii SL3/3] Length = 89 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + + V+ +F + + GE I IS F TF V+++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + I R +VFK LK Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLK 86 >gi|160945509|ref|ZP_02092735.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii M21/2] gi|158443240|gb|EDP20245.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii M21/2] Length = 108 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + + V+ +F + + GE I IS F TF V+++ R G Sbjct: 20 MTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + I R +VFK LK Sbjct: 80 INPRTREPITIAASRSIVFKPGKSLK 105 >gi|189345750|ref|YP_001942279.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] gi|189339897|gb|ACD89300.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V N + S G+ + + F TF + R G Sbjct: 1 MSKAELVEKIASQAGLTKADAERAVNAFINVVTASLKDGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK + Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEV 89 >gi|332850673|ref|ZP_08432920.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332867047|ref|ZP_08437344.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] gi|332730510|gb|EGJ61826.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332734240|gb|EGJ65369.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K I+ L++ +T + + + I + GE + + F TF VK++ +R G Sbjct: 1 MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGEDVALIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FKA LK+ + Sbjct: 61 RNPKTGEELQIAASKVPSFKAGKALKEAV 89 >gi|256851012|ref|ZP_05556401.1| integration host factor, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260661224|ref|ZP_05862138.1| integration host factor, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|282932035|ref|ZP_06337493.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] gi|256616074|gb|EEU21262.1| integration host factor, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260548161|gb|EEX24137.1| integration host factor, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|281303802|gb|EFA95946.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++KD V +F I +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVAEVAAKTKLTKKDVAAAVDAIFASIQQDLAKGEKVQLIGFGTFEVRNRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FK LK Sbjct: 64 PQTGVEIEIPASKVPAFKPGKALK 87 >gi|193214421|ref|YP_001995620.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] gi|193087898|gb|ACF13173.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 93 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ E GL++ DS R + + + G+++ + F TF V + R G Sbjct: 1 MTKADLVEKIAAESGLTKADSERALNAFVKTVSAALKSGDSVTLVGFGTFTVMDRSEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I ++V FK + LK + Sbjct: 61 RNPKTGESMTIAAKKVPKFKPGATLKNEV 89 >gi|239906700|ref|YP_002953441.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239796566|dbj|BAH75555.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+++ GL++ ++ R + I ++ V I ++ F TF V ++ +R G Sbjct: 1 MTKADLVGKIAEKTGLTKANAERALNAFIEAIEETLVGEGKITLTGFGTFMVDERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+ I +VV F+ +LK I Sbjct: 61 RNPRTGAEINIPASKVVKFRPGKLLKDAI 89 >gi|167841225|ref|ZP_02467909.1| integration host factor subunit beta [Burkholderia thailandensis MSMB43] Length = 107 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 61/103 (59%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ +RV FK L++R+ D R + K+D Sbjct: 61 GRNPKSGEKVQVPEKRVPHFKPGKELRERV--DGRAGEPLKND 101 >gi|261344361|ref|ZP_05972005.1| DNA-binding protein HU [Providencia rustigianii DSM 4541] gi|282567632|gb|EFB73167.1| DNA-binding protein HU [Providencia rustigianii DSM 4541] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + I DS +GEA+++ F TF V + +R G Sbjct: 1 MNKTELVDAIAESTDLTKTQAKSALEATLSAISDSLKKGEAVQLVGFGTFKVSHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I V F A LK + Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAV 89 >gi|332971824|gb|EGK10771.1| DNA-binding protein HU-beta [Psychrobacter sp. 1501(2011)] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++ + + + + ++ + I + F TF VK + +R G Sbjct: 1 MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKDRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I RV FKA LK R+ Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRL 89 >gi|328552929|gb|AEB23421.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus amyloliquefaciens TA208] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 48/71 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ +++++ G+++K++T V +FN I ++ +GE+IKI TF V+++ +R G Sbjct: 1 MNKTEFAGAVAEKLGVTKKEATPKVEAVFNVIVETLTKGESIKIPGVGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKI 75 RN ++ +E+ I Sbjct: 61 RNPKSGEEIDI 71 >gi|288957040|ref|YP_003447381.1| integration host factor subunit beta [Azospirillum sp. B510] gi|288909348|dbj|BAI70837.1| integration host factor subunit beta [Azospirillum sp. B510] Length = 93 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + L ++D + V T+F+EI ++ RG+ +++ F F +K++ +R Sbjct: 1 MTKSELIQRLAERNPHLYQRDIEKIVGTIFDEITEALARGDRVELRGFGAFSIKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + + FK L++R+ D Sbjct: 61 GRNPRTGESVDVGEKCIPFFKTGKQLRERLNTD 93 >gi|226324137|ref|ZP_03799655.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758] gi|225207686|gb|EEG90040.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ +S+KD+ + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAVAEQADISKKDAEKVLKAFVDVVTEEMKKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI+ + FKA LK Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALK 86 >gi|78188340|ref|YP_378678.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] gi|78170539|gb|ABB27635.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+K+ L++ D+ R +T + + S G+ + + F TF V + R G Sbjct: 1 MSKAELVEKIAKQADLTKADAERALTAFVDVMTASLKAGDDVALVGFGTFSVGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK I Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89 >gi|296116409|ref|ZP_06835023.1| integration host factor subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295977002|gb|EFG83766.1| integration host factor subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 98 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L +D + V T+F+EI + RG+ +++ F F VK++ SR Sbjct: 1 MTKSELIAELAAANPHLPARDIEQIVQTIFHEISAALARGDRVELRGFGAFTVKKRDSRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FKA L++R+ Sbjct: 61 GRNPRTGEIVAVEEKVVPFFKAGKELRERV 90 >gi|157962499|ref|YP_001502533.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] gi|157847499|gb|ABV87998.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI + FKA LK Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALK 86 >gi|327405558|ref|YP_004346396.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] gi|327321066|gb|AEA45558.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 49/85 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GLS+ D+ + + + +G+ I + F +F V ++ +R G Sbjct: 1 MNKAELIDAIASEAGLSKADAKKALDAFVGATAGALKKGDRISLVGFGSFSVSKREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT +E+ I + VV FKA + L Sbjct: 61 RNPQTGKEIAIAAKNVVRFKAGAEL 85 >gi|75674257|ref|YP_316678.1| integration host factor subunit beta [Nitrobacter winogradskyi Nb-255] gi|123759426|sp|Q3SWL5|IHFB_NITWN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|74419127|gb|ABA03326.1| integration host factor, beta subunit [Nitrobacter winogradskyi Nb-255] Length = 101 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 10/110 (9%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN +T + V +D + V FK +++R+ N+D+ TS + + Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERL---------NRDNATSEANA 101 >gi|114568651|ref|YP_755331.1| integration host factor subunit beta [Maricaulis maris MCS10] gi|122317015|sp|Q0ATJ4|IHFB_MARMM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114339113|gb|ABI64393.1| integration host factor, beta subunit [Maricaulis maris MCS10] Length = 101 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ +++ L +D R V T+ + I D+ RGE +++ F F V+ + +RV Sbjct: 1 MIKSELIDQLAEANPHLYHRDVERVVNTILDGITDALARGERVELRGFGAFSVRHRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPRTGESVAVKEKHVPFFKTGKELRERV 90 >gi|20808810|ref|NP_623981.1| nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis MB4] gi|20517460|gb|AAM25585.1| Bacterial nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis MB4] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKAELVAKIAEKSELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + +FKA LK Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALK 86 >gi|116513919|ref|YP_812825.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093234|gb|ABJ58387.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 91 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++KD + V +F I + +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I + FK LK Sbjct: 64 PQTGAEIEIPASKGPAFKPGKALK 87 >gi|167755951|ref|ZP_02428078.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402] gi|237733268|ref|ZP_04563749.1| predicted protein [Mollicutes bacterium D7] gi|167703943|gb|EDS18522.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402] gi|229383649|gb|EEO33740.1| predicted protein [Coprobacillus sp. D7] Length = 91 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+ +++ D + VT + + ++ V+G+ + + F F V+++G R G Sbjct: 1 MNKTELVEAIASSTEMTKTDVDKVVTAFVDVVTEALVKGDKVSLKGFGNFEVRERGERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + FK+SS LK + Sbjct: 61 RNPRTGETMTIAASKAPAFKSSSALKNAV 89 >gi|326335932|ref|ZP_08202109.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691896|gb|EGD33858.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 52/85 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++E GL++ D+ + + + + +G+ I + F ++ V +K +R G Sbjct: 1 MNKTELIDAIAEEAGLTKADAKKALEAFLACVEKTLKKGDKISLVGFGSWSVAEKAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI ++VV FKA + L Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTEL 85 >gi|55821216|ref|YP_139658.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55823128|ref|YP_141569.1| histone-like DNA-binding protein [Streptococcus thermophilus CNRZ1066] gi|116627943|ref|YP_820562.1| histone-like DNA-binding protein [Streptococcus thermophilus LMD-9] gi|3334160|sp|P96045|DBH_STRTR RecName: Full=DNA-binding protein HU gi|1850896|emb|CAA72098.1| hsth [Streptococcus thermophilus] gi|55737201|gb|AAV60843.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55739113|gb|AAV62754.1| histone-like DNA-binding protein [Streptococcus thermophilus CNRZ1066] gi|116101220|gb|ABJ66366.1| bacterial nucleoid protein Hbs [Streptococcus thermophilus LMD-9] gi|312278530|gb|ADQ63187.1| Histone-like DNA binding protein [Streptococcus thermophilus ND03] Length = 91 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F I + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + + I +V FKA LK + Sbjct: 64 PQTGETISIAASKVPAFKAGKALKDAV 90 >gi|302388697|ref|YP_003824518.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM 16646] gi|302199325|gb|ADL06895.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM 16646] Length = 91 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ GL++KDS + + + ++ + + +++ F TF V+++ R G Sbjct: 1 MNKAELVSVMAEKSGLTKKDSEKALNAFIEAVSEALSKRDKVQLVGFGTFEVRERSQRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + FKA LK I Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSI 89 >gi|144899463|emb|CAM76327.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+ + V +F+ I + G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLVTAVAASAGLSKADAAKAVDGVFDAISGALAGGDDVRLVGFGTFAVSERAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI + FKA LK + Sbjct: 61 RNPRTGETIKIPASKQPKFKAGKGLKDSV 89 >gi|229829761|ref|ZP_04455830.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM 14600] gi|229791750|gb|EEP27864.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM 14600] Length = 122 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KD+ + + + S +GE I++ F TF V ++ +R G Sbjct: 32 MNKTELVAAIAEQADLSKKDAEAALKAFTDVVSKSLKKGEKIQLVGFGTFEVSKRSARTG 91 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI + FKA LK Sbjct: 92 RNPQTGKTMKIAASKAPKFKAGKALK 117 >gi|167461596|ref|ZP_02326685.1| DNA-binding protein HU [Paenibacillus larvae subsp. larvae BRL-230010] Length = 114 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ ++K G S+K++ + VT + + I ++ +G+ +++ F F V+ + +R+G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV++ +V VF A LKK + Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKAL 111 >gi|46581376|ref|YP_012184.1| integration host factor subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|120601447|ref|YP_965847.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46450798|gb|AAS97444.1| integration host factor, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120561676|gb|ABM27420.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311235034|gb|ADP87888.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 91 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK +++ + ++S+ V F+ + D+ ++G+ ++I F +F VK G Sbjct: 1 MNKSELVKMLAENHEIPAEESSVIVNLFFDSVRDALLQGDRVEIRGFGSFKVKGYRGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V++ P+R+ VF+A LK+ I Sbjct: 61 RNPKTGDNVEVPPKRLPVFRAGKELKEII 89 >gi|322381499|ref|ZP_08055479.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|322382684|ref|ZP_08056542.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153345|gb|EFX45775.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154541|gb|EFX46837.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 119 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ ++K G S+K++ + VT + + I ++ +G+ +++ F F V+ + +R+G Sbjct: 28 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV++ +V VF A LKK + Sbjct: 88 RNRKTGEEVELPAGKVPVFTAGITLKKAL 116 >gi|148251722|ref|YP_001236307.1| integration host factor subunit beta [Bradyrhizobium sp. BTAi1] gi|166918540|sp|A5E8A7|IHFB_BRASB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|146403895|gb|ABQ32401.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp. BTAi1] Length = 103 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T V +D + V FK +++R+ D + DD Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNPAGAADTDD 103 >gi|229014688|ref|ZP_04171798.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|228746594|gb|EEL96487.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] Length = 93 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++K++ + N I ++ + ++I F TF V+++ +R G Sbjct: 4 MNKTELTKMVAEKAELTQKEAAAATQAVLNAITNALANEDKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|308050305|ref|YP_003913871.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] gi|307632495|gb|ADN76797.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + I S GE I + F TF V+++ R G Sbjct: 1 MNKSQLIDQIASGADISKAAAGRALDSFIDAITASLKDGEKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGKEIKIAAAKIPAFKAGKALKDAV 89 >gi|48696914|ref|YP_024677.1| gp04 [Burkholderia phage BcepMu] gi|197295397|ref|YP_002153938.1| HU DNA-binding protein [Burkholderia cenocepacia J2315] gi|44829477|gb|AAS47844.1| gp04 [Burkholderia phage BcepMu] gi|195944876|emb|CAR57482.1| HU DNA-binding protein [Burkholderia cenocepacia J2315] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++ E G+++ DS + + I S +G+ + ++ F F V + +R G Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +E+KI + FKA LK + Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >gi|332288957|ref|YP_004419809.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis UMN179] gi|330431853|gb|AEC16912.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis UMN179] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ LS+KDS + I +S G+A+++ F TF V Q+ R G Sbjct: 1 MNKTELVDVIAEKTKLSKKDSKAALEAALEAITESLKAGDAVQLIGFGTFKVNQRQERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V F + LK Sbjct: 61 RNPQTGKEIKIPATKVPAFVSGKALK 86 >gi|312862684|ref|ZP_07722924.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396] gi|322516639|ref|ZP_08069553.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124] gi|311101544|gb|EFQ59747.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396] gi|322124909|gb|EFX96333.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124] Length = 91 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F I + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLATGEKVQLIGFGNFEVRERAARQGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + + I +V FKA LK + Sbjct: 64 PQTGETISIAASKVPAFKAGKALKDAV 90 >gi|317133959|ref|YP_004089870.1| histone family protein DNA-binding protein [Ruminococcus albus 7] gi|315450421|gb|ADU23984.1| histone family protein DNA-binding protein [Ruminococcus albus 7] Length = 96 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ G ++K++ + +TT+ + I + GE + + F TF V+++ ++V Sbjct: 1 MNKAELINVIAEKGGYTKKEADKVLTTVLDTIAGALENGEKVTLVGFGTFEVRERAAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T V + R+V FKA LK+ + Sbjct: 61 LNPVTKAPVDVPARKVPAFKAGQALKEAV 89 >gi|300721652|ref|YP_003710927.1| DNA-binding protein HU-alpha [Xenorhabdus nematophila ATCC 19061] gi|297628144|emb|CBJ88695.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation [Xenorhabdus nematophila ATCC 19061] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ L++ + + + N I +S G+A+++ F TF V + R G Sbjct: 1 MNKTELVDAIAAGADLTKTQAKAALESTLNAITESLKNGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F A LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFSAGKALKDAV 89 >gi|269138351|ref|YP_003295051.1| transcriptional regulator HU subunit beta [Edwardsiella tarda EIB202] gi|267984011|gb|ACY83840.1| transcriptional regulator HU subunit beta [Edwardsiella tarda EIB202] gi|304558383|gb|ADM41047.1| DNA-binding protein HU-beta [Edwardsiella tarda FL6-60] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I++ +S+ + R + + +S G+A+ + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQEGDAVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT QE+ I +V F+A LK + Sbjct: 61 RNPQTGQEIDIPAAKVPGFRAGKALKDAV 89 >gi|304392325|ref|ZP_07374266.1| integration host factor, beta subunit [Ahrensia sp. R2A130] gi|303295429|gb|EFL89788.1| integration host factor, beta subunit [Ahrensia sp. R2A130] Length = 93 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S LV++IS L ++D V + +EI ++ RG+ +++ F F VK + RV Sbjct: 1 MIKSSLVQTISDNNPHLYQRDVENIVNAILDEITEALARGDRVELRGFGAFSVKNRNPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V+++ + V FK L+ R+ D Sbjct: 61 GRNPRTGERVEVEEKWVPFFKTGKDLRDRLNAD 93 >gi|71066029|ref|YP_264756.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus 273-4] gi|71039014|gb|AAZ19322.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus 273-4] Length = 90 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+++ GL++ + + + + ++ G++I + F TF VK + +R G Sbjct: 1 MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I + FKA LK+R+ Sbjct: 61 RNPKTGEELSIPASKAPSFKAGKNLKERL 89 >gi|309796446|ref|ZP_07690854.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|308119951|gb|EFO57213.1| DNA-binding protein HU [Escherichia coli MS 145-7] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TFHVK++ +R G Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVKEVLKAGGTVALTGFGTFHVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSV 89 >gi|163856201|ref|YP_001630499.1| integration host factor beta-subunit [Bordetella petrii DSM 12804] gi|226709770|sp|A9IJJ1|IHFB_BORPD RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|163259929|emb|CAP42230.1| integration host factor beta-subunit [Bordetella petrii] Length = 119 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 62/109 (56%), Gaps = 7/109 (6%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ RV Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 GRN ++ ++V + ++V FKA L++R+ D+ G + T P G Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGGLAD----TQPDG 103 >gi|323519066|gb|ADX93447.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K I+ L++ +T + + + I + G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGDDVALIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI +V FKA LK+ + Sbjct: 61 RNPKTGEELKIAAAKVPSFKAGKALKEAV 89 >gi|330817268|ref|YP_004360973.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3] gi|327369661|gb|AEA61017.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I++E LS+ + R + L + + G ++ ++ F TF V ++ +R G Sbjct: 1 MNKTDLIDHIAREADLSKASAGRALDALIAGVVQALESGGSVTLAGFGTFEVGERIARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + ++I+ RV F+A LK Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALK 86 >gi|311104917|ref|YP_003977770.1| integration host factor subunit beta [Achromobacter xylosoxidans A8] gi|310759606|gb|ADP15055.1| integration host factor, beta subunit [Achromobacter xylosoxidans A8] Length = 119 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ ++V + ++V FKA L++R+ D+ G N +D S SGS Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAG--GNDEDAQS-SGS 105 >gi|242279062|ref|YP_002991191.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121956|gb|ACS79652.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 91 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+KS+++E GL +S V + I ++ VRG+ ++I F +F +K+ G Sbjct: 1 MNKSELIKSLAEEKGLHVDESAEIVDAFVDAIKEALVRGDRVEIRGFGSFKMKEYKGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V + P+++ F+ LK+ + Sbjct: 61 RNPKTGDVVDVTPKKLPFFRPGKELKEYL 89 >gi|313159521|gb|EFR58884.1| DNA-binding protein HU-beta [Alistipes sp. HGB5] Length = 86 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 49/82 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + +S+ D+ + V + S GE + ++ TF V+QK +RVG Sbjct: 1 MNKAQLVEAIALDANISKIDARKAVDAIIRVTVQSLREGERLTLTGLGTFSVQQKAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN +T+ VKI PR+ V F+ + Sbjct: 61 RNPRTSAAVKIPPRKAVKFRPT 82 >gi|290474660|ref|YP_003467540.1| DNA-binding protein HU-beta [Xenorhabdus bovienii SS-2004] gi|289173973|emb|CBJ80760.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Xenorhabdus bovienii SS-2004] Length = 96 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + D+ G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSDALKDGDDVVLVGFGTFTVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+A LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAV 94 >gi|297570483|ref|YP_003691827.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296926398|gb|ADH87208.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 91 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ L +++ T+ + + RGE I+I F +F VK+ S G Sbjct: 1 MNKSELIEALARNTELPIREAGAVTGTILEAMTAAMARGENIEIRGFGSFVVKEYESYYG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++K+ P+R+ FK L++++ Sbjct: 61 RNPKTGEKIKVPPKRLPFFKVGKELREKL 89 >gi|254000458|ref|YP_003052521.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|313202418|ref|YP_004041076.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] gi|253987137|gb|ACT51994.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|312441734|gb|ADQ85840.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ G+S+ + + + + + + +G+++ + F TF V ++ +R G Sbjct: 1 MNKQELIEEIATSAGISKAAAGKVIDAFTSSVTGALKKGDSVTLIGFGTFAVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI R+ F+A LK Sbjct: 61 RNPQTGKEIKIAARKAPAFRAGKALK 86 >gi|298208491|ref|YP_003716670.1| probable DNA-binding protein HU [Croceibacter atlanticus HTCC2559] gi|83848414|gb|EAP86283.1| probable DNA-binding protein HU [Croceibacter atlanticus HTCC2559] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++++ G+S+ + + + + I +G+ I + F ++ V ++ +R G Sbjct: 1 MNKSDLIDAMAEDAGVSKAAAKKALESFLGHIEKGLKKGDRISLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA S L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAV 89 >gi|303245326|ref|ZP_07331610.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|302493175|gb|EFL53037.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 +T++DLV I+++ GL++ ++ R + F E ++ + GE I ++ F TF V ++ +R Sbjct: 1 MTKADLVGKIAEKTGLTKANAERALNA-FIEAIEATLVGEGKITLTGFGTFMVDERKART 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T E+ I +VV F+ +LK I Sbjct: 60 GRNPRTGAEINIPASKVVKFRPGKLLKDAI 89 >gi|117926043|ref|YP_866660.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609799|gb|ABK45254.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +++++ L ++ + V +FNE+ + +GE +++ F F + + R Sbjct: 1 MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T ++V ++P+ V FK ++KR+ Sbjct: 61 KNPKTGEKVNVEPKTAVHFKPGLDMRKRV 89 >gi|303230302|ref|ZP_07317069.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a] gi|302515085|gb|EFL57060.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a] Length = 99 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + + I + FKA LK+++ Sbjct: 61 RNPQNGKTITIKASKSPAFKAGKGLKEQV 89 >gi|229021542|ref|ZP_04178141.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|229027531|ref|ZP_04183759.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|229112981|ref|ZP_04242483.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|229164897|ref|ZP_04292713.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228618548|gb|EEK75558.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228670462|gb|EEL25803.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|228733777|gb|EEL84543.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|228739775|gb|EEL90173.1| DNA-binding protein HU [Bacillus cereus AH1273] Length = 90 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALASEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I +V FKA LK Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELK 86 >gi|145596669|ref|YP_001160966.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] gi|145306006|gb|ABP56588.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] Length = 91 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 LV++++ + GL++ + + + I D+ GE + I F TF VK + +R GRN +T Sbjct: 6 LVETVAAKAGLTKTAAESALDAMVEAISDALADGEKVAIPGFGTFEVKDRPARTGRNPRT 65 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + ++I R+ FK ++ LK + Sbjct: 66 GETMEIAARKAPGFKPATALKNEV 89 >gi|282600358|ref|ZP_05974005.2| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541] gi|282565675|gb|EFB71210.1| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541] Length = 96 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ ++ E +S+ + R V + S +G+ + + F TF V+++ +R+G Sbjct: 6 VNKSQLIEKVASEANISKAAAGRVVDAFVASVTGSLKKGDDVTLVGFGTFSVRKRAARIG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI V F+A LK Sbjct: 66 RNPQTGKEIKIAAATVPAFRAGKGLK 91 >gi|153815229|ref|ZP_01967897.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC 27756] gi|317502314|ref|ZP_07960483.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA] gi|331089918|ref|ZP_08338810.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA] gi|145847488|gb|EDK24406.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC 27756] gi|316896270|gb|EFV18372.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA] gi|330403150|gb|EGG82711.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA] Length = 90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++ +S+KDS + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELITAIAESADISKKDSEKALKAFVDVVTEELKKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI+ + FKA LK I Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAI 89 >gi|296533549|ref|ZP_06896119.1| integration host factor beta subunit [Roseomonas cervicalis ATCC 49957] gi|296266119|gb|EFH12174.1| integration host factor beta subunit [Roseomonas cervicalis ATCC 49957] Length = 108 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L + D V T+FNEI + RG+ +++ F F KQ+ +R Sbjct: 1 MTKSELIAQLAAANPHLRQPDVELIVGTIFNEITAALSRGDRVELRGFGAFSAKQRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK L++R+ Sbjct: 61 GRNPRTGEAVEVAGKAVPYFKPGKELRERV 90 >gi|254490897|ref|ZP_05104079.1| integration host factor, beta subunit [Methylophaga thiooxidans DMS010] gi|224463806|gb|EEF80073.1| integration host factor, beta subunit [Methylophaga thiooxydans DMS010] Length = 96 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ +S K+ L+ +D V + ++ DS +G+ I+I F +F + + RV Sbjct: 1 MTKSDLIEVLSEKQSLLNYRDVELAVKLILEQMSDSLSQGDRIEIRGFGSFTLHHRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN ++ + VK+D + V FK L+ R+ D Sbjct: 61 GRNPKSGESVKLDEKYVPHFKPGKELRDRVND 92 >gi|118594371|ref|ZP_01551718.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium HTCC2181] gi|118440149|gb|EAV46776.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium HTCC2181] Length = 90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+++++ G ++ ++ R + + + +G+++ + F TF V ++ +R G Sbjct: 1 MNKGELIEAVASATGSTKAEAGRAIDATVAAVTGALKKGDSVTLIGFGTFKVAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI R V FKA + LK + Sbjct: 61 RNPQTGAELKIAARTVPSFKAGAALKAAV 89 >gi|325264325|ref|ZP_08131056.1| DNA-binding protein HU [Clostridium sp. D5] gi|324030396|gb|EGB91680.1| DNA-binding protein HU [Clostridium sp. D5] Length = 91 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ +S+KDS + + + + D +G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEKAEISKKDSEKALKAFIDVVSDQLKKGDKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + FKA LK + Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDEV 89 >gi|289207761|ref|YP_003459827.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. K90mix] gi|288943392|gb|ADC71091.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. K90mix] Length = 90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ E + + + R + + + D+ +G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIDAIAAEADVPKAQAGRMLDAMVTVVGDTLAKGDQVSLVGFGTFLVREREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q ++I + FKA LK R+ Sbjct: 61 RNPRTGQSIQIAASKTPSFKAGKALKDRV 89 >gi|21672413|ref|NP_660480.1| integration host factor alpha-subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008628|sp|Q8KA11|IHFA_BUCAP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|21623022|gb|AAM67691.1| integration host factor Alpha-subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 100 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ + +++ ++ L+++DS FV F E+ S +GE +K+S F F +K K R G Sbjct: 3 VTKAAISENLFEKLKLTKRDSKEFVEFFFEEVRKSLEKGEDVKLSGFGNFQLKNKKERPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RRVV+FKA LK R+ Sbjct: 63 RNPRTGENILITQRRVVIFKAGQKLKNRV 91 >gi|326385528|ref|ZP_08207167.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326210067|gb|EGD60845.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ GLS+ D+T+ V +F+ I S +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLISAVADASGLSKGDATKAVEAVFDSITGSLAKGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAV 89 >gi|300703991|ref|YP_003745593.1| DNA-binding protein hu-beta, transcriptional regulator subunit beta [Ralstonia solanacearum CFBP2957] gi|299071654|emb|CBJ42978.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum CFBP2957] Length = 90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + GL + D+ R + + + I + G + ++ F +F V + +R+G Sbjct: 1 MNKAVLIAHIADQAGLKKTDANRALDAVLDGIRSTLADGGTVSLTGFGSFSVGARPARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV+I VV FKA S LK + Sbjct: 61 RNPRTGEEVEIAASHVVKFKAGSDLKAAV 89 >gi|218961276|ref|YP_001741051.1| HU, DNA-binding transcriptional regulator, alpha subunit [Candidatus Cloacamonas acidaminovorans] gi|167729933|emb|CAO80845.1| HU, DNA-binding transcriptional regulator, alpha subunit [Candidatus Cloacamonas acidaminovorans] Length = 93 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++R +LVK I+ G S+K ++ +T + I +S +GE + + F +F V + +R G Sbjct: 1 MSRDELVKKIAANAGTSQKVASAALTAVLEGITESLKKGEKVSLVGFGSFSVAHRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + +KI R V VFKA LK+ + Sbjct: 61 INPKTKKPLKIPARNVPVFKAGKNLKEAV 89 >gi|329894936|ref|ZP_08270735.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088] gi|328922665|gb|EGG30000.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088] Length = 91 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + R + + I + +G+++ + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADISKASAGRALDAVVESITGALQKGDSVSLVGFGTFQVKPRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I V FKA LK + Sbjct: 61 RNPQTGAEIQIAAANVPGFKAGKALKDAV 89 >gi|297571677|ref|YP_003697451.1| histone family protein DNA-binding protein [Arcanobacterium haemolyticum DSM 20595] gi|296932024|gb|ADH92832.1| histone family protein DNA-binding protein [Arcanobacterium haemolyticum DSM 20595] Length = 93 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++L+ I++E +++ D+ + ++ L + + +S +GEA+KI+ + ++ +R Sbjct: 2 SLNRTELIAKIAEEASITKTDADKAISALQSVLVESLAKGEAVKITGLMSVERTERAARK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAV 91 >gi|162148929|ref|YP_001603390.1| integration host factor subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209545315|ref|YP_002277544.1| integration host factor subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|189045037|sp|A9H0B5|IHFB_GLUDA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|161787506|emb|CAP57102.1| putative integration host factor beta-subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209532992|gb|ACI52929.1| integration host factor, beta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 98 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L +D V T+F+EI + RG+ +++ F F VK++ +R Sbjct: 1 MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + V FKA L++R+ Sbjct: 61 GRNPRTGEMVAVDEKVVPFFKAGKELRERV 90 >gi|313905493|ref|ZP_07838857.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] gi|313469677|gb|EFR65015.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] Length = 90 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +IS++ L++K S + + + D+ +G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAISEQTDLTKKQSEEALKAFVDVVADALKKGDKVQLVGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+ ++I + FKA LK I Sbjct: 61 RNPRTNETIEIAASKTPKFKAGKALKDLI 89 >gi|310829349|ref|YP_003961706.1| histone family protein DNA-binding protein [Eubacterium limosum KIST612] gi|308741083|gb|ADO38743.1| histone family protein DNA-binding protein [Eubacterium limosum KIST612] Length = 91 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++++ GLS+KDS + + + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIAAMAEKSGLSKKDSEKALGAFMDTVVDALKDGDKVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + ++I + FKA K + Sbjct: 61 LNPRTKEPIEIAASKAPAFKAGKAFKDEL 89 >gi|295099668|emb|CBK88757.1| bacterial nucleoid protein Hbs [Eubacterium cylindroides T2-87] Length = 94 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 50/93 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+ + DL + E+ LS+K + + T+F EI ++ + I F F + ++ Sbjct: 1 MSTTVNKKDLAAKLVAEYDLSKKVAEGCINTVFEEIMNTLKEDGVVDIYGFGKFSLSERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R+G N T ++++I + V FKAS LK + Sbjct: 61 ARMGLNPATGEKIEIPASKAVKFKASKSLKDAV 93 >gi|316931463|ref|YP_004106445.1| integration host factor subunit beta [Rhodopseudomonas palustris DX-1] gi|315599177|gb|ADU41712.1| integration host factor, beta subunit [Rhodopseudomonas palustris DX-1] Length = 104 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V ++ + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVEQKTVPFFKTGKEMRERLNRD 93 >gi|238018754|ref|ZP_04599180.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC 17748] gi|237864520|gb|EEP65810.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC 17748] Length = 99 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + + I + FKA LK+++ Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQV 89 >gi|262197073|ref|YP_003268282.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] gi|262080420|gb|ACY16389.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] Length = 106 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 50/88 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+SDL++ +S L + + V+ +F + ++ GE I+I F +F V+ + GR Sbjct: 4 TKSDLIEQLSSAAKLPKAKAELVVSVMFECMAEALQHGERIEIRGFGSFEVRDYKAYEGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + V++D +R+ FK L++RI Sbjct: 64 NPRTGEPVQVDAKRLPFFKIGKELRERI 91 >gi|313892973|ref|ZP_07826550.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str. F0412] gi|313442326|gb|EFR60741.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str. F0412] Length = 99 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + + I + FKA LK+++ Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQV 89 >gi|219849666|ref|YP_002464099.1| histone family protein DNA-binding protein [Chloroflexus aggregans DSM 9485] gi|219543925|gb|ACL25663.1| histone family protein DNA-binding protein [Chloroflexus aggregans DSM 9485] Length = 91 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ +S+K++ + + T I ++ RGE + ++ F TF V+ + +R G Sbjct: 1 MQKTDFIKAVAERAKVSQKETKQIIDTALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT +++ I + F ASS LK+ + Sbjct: 61 VNPQTREKIHIPATKTPGFSASSTLKEAV 89 >gi|49073542|gb|AAT49327.1| PA5348 [synthetic construct] Length = 91 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + L +EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK L+ Sbjct: 63 PQTGQPVKIKASNTVAFKPGKALR 86 >gi|46578812|ref|YP_009620.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120603581|ref|YP_967981.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46448224|gb|AAS94879.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120563810|gb|ABM29554.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311232675|gb|ADP85529.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 95 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 51/86 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT+T++++V +I ++ +R + V +L + + + A+ IS F F K Sbjct: 1 MSKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN QT++ + + PR+VVVF+ S Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLS 86 >gi|300312982|ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae SmR1] gi|300075767|gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein [Herbaspirillum seropedicae SmR1] Length = 101 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L KD+ V T+ + + D+ G+ I+I F +F + ++ R+ Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN ++ +V + +RV FK L++R+ D M G+ +D Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKELRERV-DAMVGQPIRED 101 >gi|220905203|ref|YP_002480515.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869502|gb|ACL49837.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 91 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K+++ E + D++ V T F+ + S + GE I+I F +F +K+ G Sbjct: 1 MNKSELIKALADETNIPFDDASMVVNTFFDAMKQSLLAGERIEIRGFGSFKIKEYEGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + +R+ F+A LK+ I Sbjct: 61 RNPKTGESVTVASKRLPFFRAGKELKEFI 89 >gi|192359929|ref|YP_001980677.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107] gi|190686094|gb|ACE83772.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107] Length = 91 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D+V +++ LS + V+ +I ++ RGE++ + F +F V ++ +R G Sbjct: 1 MNKTDIVVAVANTVELSAHKADLVVSAFVEQITNALARGESVALLGFGSFQVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + V FKA LK + Sbjct: 61 RNPQTGEAIQIAASKSVSFKAGKALKDAV 89 >gi|319902105|ref|YP_004161833.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319417136|gb|ADV44247.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 90 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 45/82 (54%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +S++ G + KD++ V +L +++ G + + F TF VK+K R+ N Sbjct: 5 EFTSELSRKLGYTLKDTSELVASLLSDMTRQLEEGNIVSVQGFGTFEVKKKAERISVNPN 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T Q + + P+ V+ +K S++LK Sbjct: 65 TKQRMLVPPKLVLTYKPSTLLK 86 >gi|1094409|prf||2106156A DNA-binding protein HU Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 55/87 (63%), Gaps = 2/87 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+T+ V +F+ I ++ +G+ +++ F F +++ +R G Sbjct: 1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFE-RERAARKG 59 Query: 65 R-NLQTNQEVKIDPRRVVVFKASSILK 90 R N QT +E++I +V FK LK Sbjct: 60 RVNPQTGEEMEIPASKVPAFKPGKALK 86 >gi|24373363|ref|NP_717406.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] gi|113970827|ref|YP_734620.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|114048052|ref|YP_738602.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|120599411|ref|YP_963985.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|126173841|ref|YP_001049990.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|146292593|ref|YP_001183017.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|153000125|ref|YP_001365806.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160874747|ref|YP_001554063.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217973907|ref|YP_002358658.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304409714|ref|ZP_07391334.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|307304070|ref|ZP_07583823.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|24347626|gb|AAN54850.1|AE015624_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1] gi|113885511|gb|ABI39563.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|113889494|gb|ABI43545.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|120559504|gb|ABM25431.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|125997046|gb|ABN61121.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|145564283|gb|ABP75218.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|151364743|gb|ABS07743.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160860269|gb|ABX48803.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217499042|gb|ACK47235.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304352232|gb|EFM16630.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|306912968|gb|EFN43391.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|315266989|gb|ADT93842.1| histone family protein DNA-binding protein [Shewanella baltica OS678] gi|319425895|gb|ADV53969.1| histone family protein DNA-binding protein [Shewanella putrefaciens 200] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+++ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI ++ FKA LK Sbjct: 61 RNPQTGEEIKIAAAKIPAFKAGKALK 86 >gi|296491988|ref|YP_003662455.1| DNA-binding protein HU-beta [Xenorhabdus nematophila ATCC 19061] gi|289176875|emb|CBJ93046.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Xenorhabdus nematophila ATCC 19061] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TF VK++ +R G Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFQVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I ++ FKA LK + Sbjct: 61 RNPQTGENIQIAAAKIPGFKAGKGLKDSV 89 >gi|255282032|ref|ZP_05346587.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469] gi|255267351|gb|EET60556.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469] Length = 91 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+KE LS+KD+ V + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAIAKETELSKKDAELAVKAFTDVVTAELKKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I + FKA LK Sbjct: 61 RNPQTGESMSIQASKTPKFKAGKALK 86 >gi|212709049|ref|ZP_03317177.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens DSM 30120] gi|212688338|gb|EEB47866.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens DSM 30120] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + I DS GEA+++ F TF V + +R G Sbjct: 1 MNKTELVDAIAESADLTKTQAKAALEATLSAISDSLKSGEAVQLVGFGTFKVSHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I V F A LK + Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAV 89 >gi|295112033|emb|CBL28783.1| bacterial nucleoid protein Hbs [Synergistetes bacterium SGP1] Length = 100 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +I+++ L +KD V +F I + RGE F F VK++ +R G Sbjct: 1 MTKAELIDAIAEKLLLKKKDVVPVVEEVFASIEGALSRGEKCTFVGFGVFEVKERAAREG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN Q + VKI ++V VF+ LK++++ ++G+K Sbjct: 61 RNPQDPTKVVKIPAKKVPVFRPGKDLKEKVL-AIKGKK 97 >gi|114777720|ref|ZP_01452680.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] gi|114551936|gb|EAU54470.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] Length = 94 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+ ++ G++R+++ V T+F+ I D+ G+ +++ F +F K + +R+ Sbjct: 1 MTKSELVEIIAEQQAGITRREAEVVVNTIFSVIGDALAVGDHVELRGFGSFTTKARQARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + + FK L++R+ Sbjct: 61 GRNPKTGEAVSVPAKSIPHFKPGKDLRERV 90 >gi|298373677|ref|ZP_06983666.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058] gi|298274729|gb|EFI16281.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058] Length = 93 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 50/82 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +S++ G+SR + R + + + + +S +GE + + +F +F VKQ+ ++ Sbjct: 1 MTKADIVNEVSRKTGISRDEVLRTLESFMDTVKNSLGKGENVYMRTFGSFIVKQRAAKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N +KI ++ FK S Sbjct: 61 RNITKNTTIKIPAHKIPAFKPS 82 >gi|148658098|ref|YP_001278303.1| histone family protein DNA-binding protein [Roseiflexus sp. RS-1] gi|148570208|gb|ABQ92353.1| bacterial nucleoid protein Hbs [Roseiflexus sp. RS-1] Length = 92 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ S+K++ V I ++ RGE + ++ F TF V+Q+ +R G Sbjct: 1 MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT +++I + F ASS LK + D Sbjct: 61 VNPQTRSKIQIPATKTPGFSASSTLKNAVKD 91 >gi|332294986|ref|YP_004436909.1| histone family protein DNA-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178089|gb|AEE13778.1| histone family protein DNA-binding protein [Thermodesulfobium narugense DSM 14796] Length = 106 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 7 RSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DL+ +++++ G+++KD T V +F+ I D+ R E +++ F TF V+++ R GR Sbjct: 3 KTDLINAVAEKCKGMTKKDCTVVVEAVFDSIKDALKRNEKVQLIGFGTFEVRERKERKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N ++ +E+ I + FKA LK+ + Sbjct: 63 NPRSKEEIVIPAMKTPGFKAGKALKEAV 90 >gi|303231969|ref|ZP_07318677.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6] gi|302513398|gb|EFL55432.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6] Length = 99 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + I + FKA LK+++ Sbjct: 61 RNPQNGDTITIKASKSPAFKAGKGLKEQV 89 >gi|160889558|ref|ZP_02070561.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC 8492] gi|270296682|ref|ZP_06202881.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480050|ref|ZP_07939162.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|156861075|gb|EDO54506.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC 8492] gi|270272669|gb|EFA18532.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903792|gb|EFV25634.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 43/82 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +S+ G + KD++ V +L ++ G I I F TF VK+K R+ N Sbjct: 5 EFTSELSRRLGYTLKDTSELVASLLADMTRQLEEGNIISIQGFGTFEVKKKAERISVNPT 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T Q + + P+ V+ +K S++LK Sbjct: 65 TKQRMLVPPKLVLTYKPSTLLK 86 >gi|114798899|ref|YP_758925.1| integration host factor subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739073|gb|ABI77198.1| integration host factor, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 99 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S L++ ++ E L +D + V + EI D+ RG+ +++ F F V+++ +R Sbjct: 1 MLKSQLIEKLAAENAHLRHEDVEKVVNVILGEIGDALTRGDRVELRGFGAFSVRKRDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+ + V FKA L+ R+ Sbjct: 61 GRNPRTGEPVKVPAKAVPFFKAGKELRARV 90 >gi|325521368|gb|EGD00211.1| histone family protein DNA-binding protein [Burkholderia sp. TJI49] Length = 92 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+++ V + + I D+ RGE++++ F F Q+ +R G Sbjct: 1 MNKQELIDAVATGAGVSKTDASKTVQAVLDAITDAVSRGESVQLIGFGAFSQGQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T E+ I V F A K + Sbjct: 61 RNPTTGAEIAIPAANTVKFTAGKAFKDGV 89 >gi|294146438|ref|YP_003559104.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] gi|292676855|dbj|BAI98372.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] Length = 91 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++L ++++ + GL++ D+ ++V +F+ I +A +GE + ++ F F VK + +R G Sbjct: 1 MNNTELAEALAADHGLTKADARKYVDGVFSAIAGAAAKGEEVSLNGFGKFKVKDQPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T ++I + + F + +K ++ Sbjct: 61 RNPSTGAVIQIAASKKLTFTPAKAVKDQL 89 >gi|291548185|emb|CBL21293.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. SR1/5] Length = 92 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++K+ LS+KD + + + + D +GE I++ F TF V + +R G Sbjct: 1 MNKTELVAAMAKDTNLSKKDVEAVLKSFIDVVTDELKKGEKIQLVGFGTFEVSTRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I+ + FKA LK Sbjct: 61 RNPQTGETMTIEASKSPKFKAGKALK 86 >gi|325922711|ref|ZP_08184451.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC 19865] gi|325546828|gb|EGD17942.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC 19865] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +GEA+ + F TF V+++ R G Sbjct: 1 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGEAVTLVGFGTFQVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAV 89 >gi|124267432|ref|YP_001021436.1| putative integration host factor subunit beta (ihf-beta) protein [Methylibium petroleiphilum PM1] gi|124260207|gb|ABM95201.1| putative integration host factor beta-subunit (ihf-beta) protein [Methylibium petroleiphilum PM1] Length = 111 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV + + F L+ +D+ V T+ + + D+ RG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVALLGERFSQLTHRDTEFAVKTILDAMSDALARGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V I + V FK L++ + Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90 >gi|15600541|ref|NP_254035.1| DNA-binding protein [Pseudomonas aeruginosa PAO1] gi|107104450|ref|ZP_01368368.1| hypothetical protein PaerPA_01005527 [Pseudomonas aeruginosa PACS2] gi|116053495|ref|YP_793822.1| HU family DNA-binding protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218894451|ref|YP_002443321.1| putative DNA-binding protein [Pseudomonas aeruginosa LESB58] gi|254237960|ref|ZP_04931283.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719] gi|254243767|ref|ZP_04937089.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192] gi|296392208|ref|ZP_06881683.1| putative DNA-binding protein [Pseudomonas aeruginosa PAb1] gi|313106776|ref|ZP_07792992.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016] gi|14194645|sp|Q9HTL0|DBHA_PSEAE RecName: Full=DNA-binding protein HU-alpha gi|9951668|gb|AAG08733.1|AE004947_3 probable DNA-binding protein [Pseudomonas aeruginosa PAO1] gi|115588716|gb|ABJ14731.1| putative DNA-binding protein HU family [Pseudomonas aeruginosa UCBPP-PA14] gi|126169891|gb|EAZ55402.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719] gi|126197145|gb|EAZ61208.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192] gi|218774680|emb|CAW30497.1| probable DNA-binding protein [Pseudomonas aeruginosa LESB58] gi|310879494|gb|EFQ38088.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + L +EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK L+ Sbjct: 63 PQTGQPVKIKASNTVAFKPGKALR 86 >gi|317402986|gb|EFV83525.1| integration host factor beta-subunit [Achromobacter xylosoxidans C54] Length = 119 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ ++V + ++V FKA L++R+ D+ G N +D S SGS Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLVG--GNDEDAQS-SGS 105 >gi|187777484|ref|ZP_02993957.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC 15579] gi|187774412|gb|EDU38214.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC 15579] Length = 109 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD+ + + + ++ GE +++ F TF +++ RVG Sbjct: 18 VNKSELITSMAEKSKLTKKDAEAALKSFIESVEEALEGGEKVQLVGFGTFETRERAERVG 77 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I VFKA LK+++ Sbjct: 78 RNPRTKEEITIPASIAPVFKAGKELKEKV 106 >gi|159474730|ref|XP_001695478.1| predicted protein [Chlamydomonas reinhardtii] gi|158275961|gb|EDP01736.1| predicted protein [Chlamydomonas reinhardtii] Length = 87 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV++I+ E GL++ + + +L I D+ + G+ + I F TF V+++ +R GRN Sbjct: 1 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 60 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + VFKAS LK + Sbjct: 61 PSTGAVLQIAASKAPVFKASVGLKDAV 87 >gi|119946633|ref|YP_944313.1| integration host factor, beta subunit [Psychromonas ingrahamii 37] gi|166975884|sp|A1SYZ9|IHFB_PSYIN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119865237|gb|ABM04714.1| integration host factor, beta subunit [Psychromonas ingrahamii 37] Length = 95 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ + SK F LS K+ V + +S +GE I++ F +F + + RV Sbjct: 1 MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++D + V FK L++R+ Sbjct: 61 GRNPKTGDRVELDGKYVPHFKPGKALRERV 90 >gi|255016156|ref|ZP_05288282.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|256842574|ref|ZP_05548076.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|256735930|gb|EEU49262.1| integration host factor, alpha subunit [Parabacteroides sp. D13] Length = 98 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSR 62 ++ R +LV+S+ +E GL K+ R V + +R GE+I + F +F Q+ R Sbjct: 7 SMNRGELVQSLVEETGLP-KNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSER 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + RN +T +EV I PR V FKA S L K + Sbjct: 66 LARNPKTGEEVMITPRVSVKFKAGSDLLKEL 96 >gi|317485299|ref|ZP_07944179.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316923425|gb|EFV44631.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 100 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 51/86 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T++D+V++I ++ +R D V L + + + +A+ +S F F K Sbjct: 1 MNRALTKADIVEAIYEKTDRNRADVKNTVEILLGLMKQAIKKDDALLVSGFGKFEAYDKE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN QT++ + + PR+VVVF+ S Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLS 86 >gi|319941268|ref|ZP_08015599.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319805189|gb|EFW02012.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 91 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +++++ GLS+ D+ + + F + + +G+A++I F F V +R G Sbjct: 1 MNKTELTAAVAQKAGLSKSDAAKVLGAFFETVSEELSKGQAVQIIGFGNFEVADYKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + F A S LKK + Sbjct: 61 RNPQTGAVLEIPAGKRPKFTAGSALKKAV 89 >gi|150395249|ref|YP_001325716.1| integration host factor subunit beta [Sinorhizobium medicae WSM419] gi|166975894|sp|A6U5F1|IHFB_SINMW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150026764|gb|ABR58881.1| integration host factor, beta subunit [Sinorhizobium medicae WSM419] Length = 103 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T V ++ + V FK L++R+ M G +DD Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNGNDNGEDD 103 >gi|193215171|ref|YP_001996370.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] gi|193088648|gb|ACF13923.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 100 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 53/94 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+ GL+++++ V + ++ GE I+I F T++V++K R+ Sbjct: 1 MTKADIVSIIASRTGLTKQETETVVDGFIEAVIEALKAGERIEIRGFGTYNVRKKNKRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T ++V ID + V FK S K + D + Sbjct: 61 RNPRTGEKVVIDEKYVPTFKISKEFKSAVSDSYK 94 >gi|193213517|ref|YP_001999470.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] gi|193086994|gb|ACF12270.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] Length = 91 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ E G+++ ++ R V N + + G+ + + F TF + R G Sbjct: 1 MSKAELVEQIAAETGMTKAEAERAVNAFINVVTSTLKGGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK I Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89 >gi|77360230|ref|YP_339805.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875141|emb|CAI86362.1| DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation [Pseudoalteromonas haloplanktis TAC125] Length = 89 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +++++ L++KD+ +T+L I S G+ ++I+ F TF + +R G Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT ++I+ VFKAS LK Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALK 86 >gi|170718718|ref|YP_001783908.1| histone family protein DNA-binding protein [Haemophilus somnus 2336] gi|168826847|gb|ACA32218.1| histone family protein DNA-binding protein [Haemophilus somnus 2336] Length = 91 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S GEA+++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIAGAAELNKKQAKAALEATLGAIAGSLKAGEAVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I +V F A LK Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALK 86 >gi|240948534|ref|ZP_04752907.1| DNA-binding protein HU [Actinobacillus minor NM305] gi|257464750|ref|ZP_05629121.1| DNA-binding protein HU [Actinobacillus minor 202] gi|240297042|gb|EER47613.1| DNA-binding protein HU [Actinobacillus minor NM305] gi|257450410|gb|EEV24453.1| DNA-binding protein HU [Actinobacillus minor 202] Length = 90 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + LS+KD+ + + +S G+ +++ F TF V ++ +R G Sbjct: 1 MNKSELIDAIAAKAELSKKDAKAALEATLEAVSESLKAGDTVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI ++ F A LK Sbjct: 61 RNPRTGEEIKIAAAKIPAFVAGKALK 86 >gi|167855104|ref|ZP_02477876.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755] gi|219870700|ref|YP_002475075.1| integration host factor subunit beta [Haemophilus parasuis SH0165] gi|254803535|sp|B8F475|IHFB_HAEPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|167853739|gb|EDS24981.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755] gi|219690904|gb|ACL32127.1| integration host factor, beta subunit/bacterial nucleoid DNA-binding protein [Haemophilus parasuis SH0165] Length = 93 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ ++ LS K V + +I S +GE I++ F +F + + RV Sbjct: 1 MTKSELIANLVAQYPSLSVKSVDESVKEILEQIMGSLEQGERIEVRGFGSFSLHYRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKELKERV 90 >gi|78065633|ref|YP_368402.1| integration host factor subunit beta [Burkholderia sp. 383] gi|206561284|ref|YP_002232049.1| integration host factor subunit beta [Burkholderia cenocepacia J2315] gi|123770067|sp|Q39IF8|IHFB_BURS3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709775|sp|B4EB39|IHFB_BURCJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|77966378|gb|ABB07758.1| Integration host factor, beta subunit [Burkholderia sp. 383] gi|198037326|emb|CAR53251.1| integration host factor beta-subunit [Burkholderia cenocepacia J2315] gi|325520509|gb|EGC99605.1| integration host factor subunit beta [Burkholderia sp. TJI49] Length = 107 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D G DD Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADD 102 >gi|262196426|ref|YP_003267635.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] gi|262079773|gb|ACY15742.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] Length = 168 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L++ +S+ L + + V +F+ + + G+ I+I F +F V+Q + G Sbjct: 1 MTKSELIEQVSELLKLPNGKAEQIVNCIFDSMVSALQDGDGIEIRGFGSFTVRQYKAYEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + P+R+ FK L++R+ Sbjct: 61 RNPRTGETVHVAPKRLPFFKVGKDLRERV 89 >gi|320354725|ref|YP_004196064.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320123227|gb|ADW18773.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 92 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL++SI+ +S+ + R + L + + + G+ + + F +F V + R G Sbjct: 1 MNKSDLIESIAHSAQISKIAAERGLNGLLSTLSAAITEGKRVTLVGFGSFSVVDRAPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + V I PRRVV F+ L +I+ D Sbjct: 61 RNPKTGETVPIPPRRVVKFRPGKELAGKILCD 92 >gi|317051936|ref|YP_004113052.1| histone family protein DNA-binding protein [Desulfurispirillum indicum S5] gi|316947020|gb|ADU66496.1| histone family protein DNA-binding protein [Desulfurispirillum indicum S5] Length = 93 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV+ I K +++K + V LF I D+ G+ +++ F +F +++G R Sbjct: 1 MTKADLVERICEKTDSVNKKQAEAVVNGLFECIIDALEEGDKVELRGFGSFKTRERGPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V + +RV FK L++R+ Sbjct: 61 GRNPKTGDKVSVPSKRVPYFKPGKELRERV 90 >gi|146280834|ref|YP_001170987.1| HU family DNA-binding protein [Pseudomonas stutzeri A1501] gi|145569039|gb|ABP78145.1| DNA-binding protein, HU family [Pseudomonas stutzeri A1501] Length = 105 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ LS+ + R + + +EI ++ R +++ + F TF + +G+R G+N Sbjct: 18 KPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTGKN 77 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT Q V I V FK +LK + Sbjct: 78 PQTGQPVTIKASNTVAFKPGKMLKDAV 104 >gi|85859597|ref|YP_461799.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85722688|gb|ABC77631.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 93 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ + + +SRK+ V + F I +G + IS F + V+ K R G Sbjct: 3 LTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT +++ I R+VV FKAS L Sbjct: 63 RNPQTGEDLTITARKVVTFKASPNL 87 >gi|15616751|ref|NP_239963.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681506|ref|YP_002467891.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682062|ref|YP_002468446.1| integration host factor alpha-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471187|ref|ZP_05635186.1| integration host factor subunit alpha [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132925|sp|P57231|IHFA_BUCAI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803511|sp|B8D8T2|IHFA_BUCA5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803512|sp|B8D736|IHFA_BUCAT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|25294341|pir||A84945 integration host factor alpha-subunit [imported] - Buchnera sp. (strain APS) gi|10038814|dbj|BAB12849.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621795|gb|ACL29951.1| integration host factor alpha-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624349|gb|ACL30504.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085875|gb|ADP65957.1| integration host factor subunit alpha [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087027|gb|ADP67107.1| integration host factor subunit alpha [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087593|gb|ADP67672.1| integration host factor subunit alpha [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 102 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 58/93 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ + +++ ++ L++K+S FV F E+ S +GEA+K+S F F +K+K +R G Sbjct: 3 LTKAAISENLFEKLQLTKKESKEFVEFFFEEVRKSLEKGEAVKLSGFGNFQIKKKKARPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN +T + I RRVV FKA LK +I + + Sbjct: 63 RNPRTGEIFLITARRVVTFKAGQKLKNKINNYL 95 >gi|326385372|ref|ZP_08207017.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326210178|gb|EGD60950.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ ++L ++++ GL++ + V +FN I ++A +GE I +++F F VK +R Sbjct: 2 TMNTAELAEAVASSQGLTKAAARELVDAVFNAIVEAATKGEEISLNAFGKFKVKDTPARE 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + I R + F + +K +I Sbjct: 62 GRNPSTGAVIAIAASRKLTFAPAKAVKDKI 91 >gi|309792618|ref|ZP_07687079.1| histone family protein DNA-binding protein [Oscillochloris trichoides DG6] gi|308225340|gb|EFO79107.1| histone family protein DNA-binding protein [Oscillochloris trichoides DG6] Length = 91 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K+++++ G+S+K++ V + + I ++ RGE + ++ F TF V+ + +R G Sbjct: 1 MQKTDFIKAVAEKAGVSQKETKLVVDSALDVITEALARGEKVTLTGFGTFEVRSRRAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N QT ++ I + F ASS LK Sbjct: 61 VNPQTRDKIHIPETKTPGFSASSTLK 86 >gi|313207044|ref|YP_004046221.1| histone family protein DNA-binding protein [Riemerella anatipestifer DSM 15868] gi|312446360|gb|ADQ82715.1| histone family protein DNA-binding protein [Riemerella anatipestifer DSM 15868] gi|315022562|gb|EFT35589.1| DNA-binding protein HU [Riemerella anatipestifer RA-YM] gi|325335519|gb|ADZ11793.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer RA-GD] Length = 97 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +IS + G+ + D+ + + EI S G + + F +F +K + ++ G Sbjct: 1 MTKAELVNTISNKLGIEKNDTQKVIEAFMQEIRGSLYEGNNVYLRGFGSFIIKTRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N ++I + FK S +R+ Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKSFAERV 89 >gi|297538181|ref|YP_003673950.1| histone family protein DNA-binding protein [Methylotenera sp. 301] gi|297257528|gb|ADI29373.1| histone family protein DNA-binding protein [Methylotenera sp. 301] Length = 90 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ GL++ D+ R + I + G+A+ + F TF V Q+ +R G Sbjct: 1 MNKSELIDAIAASAGLTKADAGRAIDATTAAITAALKNGDAVTLVGFGTFKVTQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T E+KI R+ F A LK Sbjct: 61 RNPRTGAELKIAARKAPAFTAGKTLK 86 >gi|269467813|gb|EEZ79565.1| histone family protein [uncultured SUP05 cluster bacterium] Length = 90 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ D+ R + I + G+ ++I+ F +F V+ + +R G Sbjct: 1 MNKSELIDAIASAANLSKADAGRALNATTGAITSALSGGDGVQITGFGSFVVRARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + FKA LK+ + Sbjct: 61 RNPQTGATIQIKASKNAAFKAGKALKEAV 89 >gi|107022126|ref|YP_620453.1| integration host factor subunit beta [Burkholderia cenocepacia AU 1054] gi|116689071|ref|YP_834694.1| integration host factor subunit beta [Burkholderia cenocepacia HI2424] gi|170732359|ref|YP_001764306.1| integration host factor subunit beta [Burkholderia cenocepacia MC0-3] gi|123072317|sp|Q1BY25|IHFB_BURCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709773|sp|B1JXS2|IHFB_BURCC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709774|sp|A0K5M4|IHFB_BURCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|105892315|gb|ABF75480.1| integration host factor, beta subunit [Burkholderia cenocepacia AU 1054] gi|116647160|gb|ABK07801.1| integration host factor, beta subunit [Burkholderia cenocepacia HI2424] gi|169815601|gb|ACA90184.1| integration host factor, beta subunit [Burkholderia cenocepacia MC0-3] Length = 107 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D G DD Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADD 102 >gi|299139694|ref|ZP_07032867.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] gi|298598318|gb|EFI54483.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] Length = 117 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV + L+R+D V TLF+ I + G+ +++ F +F +Q+ R G Sbjct: 1 MTKAELVDHVIALGDLTRRDGEVIVDTLFDSIIGAVKSGDKVEVRGFGSFRTRQRKPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V + +RV FK S L+ I Sbjct: 61 RNPKTGASVSVPAKRVPYFKPSKDLRDLI 89 >gi|1706310|sp|P52681|DBHB_SERMA RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|802008|gb|AAA65988.1| HU beta [Serratia marcescens] gi|1586263|prf||2203354B heterodimeric HU protein Length = 90 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F +F V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKAGDDVALVGFGSFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI R+V F+A LK + Sbjct: 61 RNPQTGKEIKIAARKVPAFRAGKALKDAV 89 >gi|288817831|ref|YP_003432178.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus TK-6] gi|288787230|dbj|BAI68977.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus TK-6] gi|308751429|gb|ADO44912.1| histone family protein DNA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 90 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K G+++K + + + + I S +GE + I F F V+++ +R G Sbjct: 1 MTKAELVSAVAKGAGITKKQADAALKSAISAIAGSLKKGERVAIPGFGIFTVRKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + I R+VV F+ + L++ I Sbjct: 61 RNPRTGAVINIPARKVVTFRPAKDLRESI 89 >gi|87199383|ref|YP_496640.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87135064|gb|ABD25806.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 90 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S++ GLS+ D+T+ V +F I + +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLIGSVADASGLSKGDATKAVEAVFESISGALAKGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAV 89 >gi|325111062|ref|YP_004272130.1| histone family protein DNA-binding protein [Planctomyces brasiliensis DSM 5305] gi|324971330|gb|ADY62108.1| histone family protein DNA-binding protein [Planctomyces brasiliensis DSM 5305] Length = 136 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA--IKISSFATFHVKQKGSR 62 +T+ ++VK+IS E GL++ + V F I ++ V I++ +F F VK++ +R Sbjct: 1 MTKKEIVKAISDELGLTQLQTKAIVQRTFESIIETLVHDPKHRIELRNFGVFEVKKRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +TN+ V ++ + VV FK +++++ M+ + Sbjct: 61 KARNPRTNERVDVEEKYVVTFKPGKEMEEKVRQLMKAEE 99 >gi|152995752|ref|YP_001340587.1| histone family protein DNA-binding protein [Marinomonas sp. MWYL1] gi|150836676|gb|ABR70652.1| histone family protein DNA-binding protein [Marinomonas sp. MWYL1] Length = 90 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ ++ + I + +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADLSKASASNALDATLKAIEAALAKGDQVTLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGEEIQIKAAKVPGFKAGKGLKDAV 89 >gi|322381185|ref|ZP_08055188.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154761|gb|EFX47032.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 90 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +I+ + GL++KD + E+ ++ G+ +++ F TF + + R G Sbjct: 1 MNKVDLINNIATKSGLTKKDVETVLNGFLGEVTEALSSGDKVQLIGFGTFETRVRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I +V FKA + LK+ + Sbjct: 61 RNPQTGKTITIPESKVPAFKAGNKLKEAV 89 >gi|21673001|ref|NP_661066.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS] gi|21646065|gb|AAM71408.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS] Length = 91 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++L + I+++ GL++ D+ R V N + + G+ + + F TF + R G Sbjct: 1 MSKAELAEKIAEQTGLTKADAERAVNAFINVVTSTLKSGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK+ + Sbjct: 61 RNPQTGKTITIAAKKVVKFKPGKALKEEV 89 >gi|327399206|ref|YP_004340075.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] gi|327181835|gb|AEA34016.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] Length = 91 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L++ ++++ G ++ + + + I D+ GE + + F TF+V ++ +R+G Sbjct: 1 MTKAELIEKVAEKTGATKSQTKKVIDAALETIMDAVAAGEKVGFAGFGTFYVSKRSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++++I+ + FK I K+++ Sbjct: 61 RNPRTGEKLQIEAFNLPSFKCGRIFKEKV 89 >gi|110834074|ref|YP_692933.1| DNA-binding protein HU [Alcanivorax borkumensis SK2] gi|110647185|emb|CAL16661.1| DNA-binding protein HU [Alcanivorax borkumensis SK2] Length = 90 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ D+ R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT Q +KI V FKA LK + Sbjct: 61 RNPQTGQTIKIAAANVPGFKAGKALKDAV 89 >gi|283851059|ref|ZP_06368343.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|283573455|gb|EFC21431.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] Length = 90 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 +T++DLV I+++ GL++ ++ R + F E ++ + GE + ++ F TF V ++ +R Sbjct: 1 MTKADLVGKIAEKTGLTKANAERALNA-FIEAIEATLVGEGKLTLTGFGTFMVDERKART 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T E+ I +VV F+ +LK I Sbjct: 60 GRNPRTGTEINIPASKVVKFRPGKLLKDAI 89 >gi|218885662|ref|YP_002434983.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756616|gb|ACL07515.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 91 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++S+E + +++ V T + + ++ G+ ++I F +F VK G G Sbjct: 1 MNKSELIKTLSEETNIPIEEAAMVVNTFVDNMKEALADGDRVEIRGFGSFKVKDYGGYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V + P+R+ F+A LK+ + D Sbjct: 61 RNPKTGDMVVVQPKRLPFFRAGKELKEFLND 91 >gi|254498715|ref|ZP_05111431.1| integration host factor (IHF) alpha subunit [Legionella drancourtii LLAP12] gi|254352043|gb|EET10862.1| integration host factor (IHF) alpha subunit [Legionella drancourtii LLAP12] Length = 97 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++++ + +++ E LS+ S V F + + G +K+S F F ++ K R Sbjct: 3 ALSKAIMAETLCDELKLSKPASKEMVENFFEVLRHALEHGHHVKLSGFGNFTLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ + RRVV FK+ LK +I Sbjct: 63 GRNPKTGEEIPVVARRVVTFKSGLKLKTKI 92 >gi|125975139|ref|YP_001039049.1| nucleoid protein Hbs [Clostridium thermocellum ATCC 27405] gi|256003205|ref|ZP_05428197.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281418440|ref|ZP_06249459.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|125715364|gb|ABN53856.1| bacterial nucleoid protein Hbs [Clostridium thermocellum ATCC 27405] gi|255992896|gb|EEU02986.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281407524|gb|EFB37783.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|316939306|gb|ADU73340.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 1313] Length = 91 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ LS+KD+ + + + ++ +G+ I++ F +F V+++ R G Sbjct: 1 MNKTELIASMAEKSQLSKKDAEKALNAFIESVEEALAKGDKIQLVGFGSFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + +FK LK+ + Sbjct: 61 RNPQTKEEIVIPATKTPIFKVGKGLKELV 89 >gi|254507806|ref|ZP_05119937.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16] gi|219549331|gb|EED26325.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16] Length = 90 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + L + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDALIEAVSDTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86 >gi|293604178|ref|ZP_06686586.1| integration host factor beta subunit [Achromobacter piechaudii ATCC 43553] gi|292817403|gb|EFF76476.1| integration host factor beta subunit [Achromobacter piechaudii ATCC 43553] Length = 119 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ ++V + ++V FKA L++R+ D+ G N +D S SGS Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLVG--GNDEDAQS-SGS 105 >gi|320451084|ref|YP_004203180.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01] gi|320151253|gb|ADW22631.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01] Length = 97 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV ++ GL +KD V +++ ++ G ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVDQVAAATGLKKKDVKAAVDAFLSKVEEALASGNKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK+++ Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKEKV 95 >gi|309378123|emb|CBX23232.1| DNA-binding protein HU-beta [Neisseria lactamica Y92-1009] Length = 94 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + D+ +G+ + + F TF+V ++ R G Sbjct: 6 VNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 66 RNPKTGEPLTIAAAKTPKFRAGKALK 91 >gi|298377242|ref|ZP_06987195.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19] gi|298265656|gb|EFI07316.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19] Length = 91 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + R +LV+S+ +E GL K+ R V + +R GE+I + F +F Q+ R+ Sbjct: 1 MNRGELVQSLVEETGLP-KNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV I PR V FKA S L K + Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKEL 89 >gi|294635327|ref|ZP_06713824.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] gi|291091303|gb|EFE23864.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I++ +S+ + R + + +S +G+A+ + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQQGDAVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V F+A LK + Sbjct: 61 RNPQTGKEIEISAAKVPGFRAGKALKDAV 89 >gi|218297163|ref|ZP_03497825.1| histone family protein DNA-binding protein [Thermus aquaticus Y51MC23] gi|218242440|gb|EED08979.1| histone family protein DNA-binding protein [Thermus aquaticus Y51MC23] Length = 97 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV ++ GL +KD+ + ++ ++ G ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVDQVAAAAGLKKKDAKAAIDAFLAKVEEALAAGNKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK ++ Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 95 >gi|15607110|ref|NP_214492.1| integration host factor beta subunit [Aquifex aeolicus VF5] gi|2984363|gb|AAC07882.1| integration host factor beta subunit [Aquifex aeolicus VF5] Length = 100 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 52/98 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SD+ K +++ G+S K + V F + + GE +++ TF +K+K R Sbjct: 1 MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 +N +T E+ + R V +K S +L+K++ D +C Sbjct: 61 KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREEC 98 >gi|315635141|ref|ZP_07890419.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393] gi|315476103|gb|EFU66857.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S +GEA+++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+KI +V F + LK Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALK 86 >gi|188026554|ref|ZP_02962557.2| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC 25827] gi|188019405|gb|EDU57445.1| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC 25827] Length = 96 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ E +S+ + R V + S +G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDQIASEANISKAAAGRVVDAFVASVTTSLSKGDDVALVGFGTFTVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+ LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAV 94 >gi|110597679|ref|ZP_01385964.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340799|gb|EAT59276.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 91 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+++ L++ D+ R V N + S +G+ + + F TF + R G Sbjct: 1 MSKAELVEKIAEQANLTKVDAERAVNAFINVVTGSLKQGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I ++VV FK LK+ + Sbjct: 61 RNPQTGAAITISAKKVVKFKPGKALKEEV 89 >gi|320528538|ref|ZP_08029695.1| DNA-binding protein HU [Solobacterium moorei F0204] gi|320131124|gb|EFW23697.1| DNA-binding protein HU [Solobacterium moorei F0204] Length = 96 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 50/88 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L +++++GL++K + V +F+EI + +G + ++ F F V +K +R Sbjct: 5 KVVTKKTLADDLAEKYGLTKKAAGEAVNYVFDEIATTIKKGGEVSLNGFGKFTVVKKKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 G N T +++KI + FKAS LK Sbjct: 65 TGLNPATGEKIKIKATKAPKFKASKTLK 92 >gi|326804607|ref|YP_004327478.1| DNA binding protein [Salmonella phage Vi01] gi|301795257|emb|CBW37975.1| DNA binding protein [Salmonella phage Vi01] Length = 92 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+D + I++ G+++ ++ + V + N + + G++++ F F VK + +R G Sbjct: 1 MNRTDFIAHIAQTQGMTKGEAEKIVASFINGVKTAVAAGQSVQFVGFGAFEVKHQEARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN Q ++I+ + VV FK LK Sbjct: 61 RNPLNGQAIQIEAKNVVKFKVGEGLK 86 >gi|295426287|ref|ZP_06818947.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] gi|295064026|gb|EFG54974.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] Length = 117 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 48/88 (54%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V LF+ I ++ +G +++ F TF V+ + +R GR Sbjct: 29 NKAELVSEVASKTDLTKKEVAAAVEALFSSIQENLSKGNKVQLIGFGTFEVRHRAARKGR 88 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT E++I V FK LK + Sbjct: 89 NPQTGAEIQIPASEVPAFKPGKALKYAV 116 >gi|148381474|ref|YP_001256015.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502] gi|153931858|ref|YP_001385849.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397] gi|153937038|ref|YP_001389256.1| DNA-binding protein HU [Clostridium botulinum A str. Hall] gi|153939802|ref|YP_001392888.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland] gi|168181003|ref|ZP_02615667.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916] gi|170755876|ref|YP_001783174.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra] gi|170761658|ref|YP_001788874.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree] gi|226950990|ref|YP_002806081.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto] gi|148290958|emb|CAL85094.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502] gi|152927902|gb|ABS33402.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397] gi|152932952|gb|ABS38451.1| DNA-binding protein HU [Clostridium botulinum A str. Hall] gi|152935698|gb|ABS41196.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland] gi|169121088|gb|ACA44924.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra] gi|169408647|gb|ACA57058.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree] gi|182668057|gb|EDT80036.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916] gi|226841522|gb|ACO84188.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto] gi|295320865|gb|ADG01243.1| DNA-binding protein HU [Clostridium botulinum F str. 230613] gi|322807859|emb|CBZ05434.1| DNA-binding protein HBsu [Clostridium botulinum H04402 065] Length = 92 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD+ + + ++ GE +++ F TF +++ RVG Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I VFKA LK+++ Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89 >gi|168183614|ref|ZP_02618278.1| DNA-binding protein HU [Clostridium botulinum Bf] gi|237796995|ref|YP_002864547.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657] gi|182673203|gb|EDT85164.1| DNA-binding protein HU [Clostridium botulinum Bf] gi|229261295|gb|ACQ52328.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657] Length = 93 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD+ + + ++ GE +++ F TF +++ RVG Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I VFKA LK+++ Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89 >gi|295109533|emb|CBL23486.1| Bacterial nucleoid DNA-binding protein [Ruminococcus obeum A2-162] Length = 91 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++KE LS+KD + + + + D +G I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVADELKKGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I + FKA LK Sbjct: 61 RNPQTGETMTIAASKAPKFKAGKALK 86 >gi|297568603|ref|YP_003689947.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296924518|gb|ADH85328.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 49/85 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+ ++K G+S+ + + + + I + +G+ + + F TF V ++ +R G Sbjct: 1 MNKSELVEQMAKAGGISKATAEKALAGALDGITKALKKGDKVTLVGFGTFSVTKRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + + I R+V FKA S L Sbjct: 61 RNPQTGKPITIKARKVARFKAGSKL 85 >gi|261867382|ref|YP_003255304.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390874|ref|ZP_06635208.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412714|gb|ACX82085.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951408|gb|EFE01527.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D7S-1] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S +GEA+++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASSAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+KI +V F + LK Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALK 86 >gi|253565663|ref|ZP_04843118.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] gi|251945942|gb|EES86349.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] Length = 96 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +S+ G + K ++ +T+L ++I G AI I F TF VK+K R+ N Sbjct: 5 EFTSELSRRLGYNTKYTSELITSLLSDITQELQEGNAIGIQGFGTFEVKKKAERIVINPV 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T + + P+ V+ FK S ILK Sbjct: 65 TKLRLLVPPKLVLAFKPSPILK 86 >gi|192361790|ref|YP_001982469.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107] gi|190687955|gb|ACE85633.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++I+ + + + R + + I + G+++ + F TF VK++ +R G Sbjct: 1 MNKTELIEAIAASADIPKAAAGRALDAVVESITGALKNGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V FKA LK + Sbjct: 61 RNPQTGEEIKIAAAKVPGFKAGKALKDAV 89 >gi|150025716|ref|YP_001296542.1| histone-like DNA-binding protein HU-alpha [Flavobacterium psychrophilum JIP02/86] gi|149772257|emb|CAL43733.1| Histone-like bacterial DNA-binding protein HU-alpha [Flavobacterium psychrophilum JIP02/86] Length = 98 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 7/104 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ GL + D V T E+ +S G+ + + F +F VK + + G Sbjct: 1 MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 RN+ N +KI + FK + + + G K N + T Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF-------VEGVKTNNEATT 97 >gi|28872577|ref|NP_795196.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000] gi|28855832|gb|AAO58891.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 23 KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 82 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 83 PQTGEPVKIKASNTVAFKPGKALK 106 >gi|190015068|ref|YP_001966692.1| DNA-binding protein HU [Bacillus cereus] gi|190015334|ref|YP_001967017.1| DNA-binding protein HU [Bacillus cereus] gi|218848460|ref|YP_002455066.1| DNA-binding protein HU 1 [Bacillus cereus AH820] gi|228943061|ref|ZP_04105556.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975886|ref|ZP_04136415.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|71025122|gb|AAZ17499.1| HbsU-like protein [Bacillus thuringiensis] gi|116584744|gb|ABK00859.1| DNA-binding protein HU [Bacillus cereus] gi|116585015|gb|ABK01124.1| DNA-binding protein HU [Bacillus cereus] gi|218540511|gb|ACK92907.1| DNA-binding protein HU 1 [Bacillus cereus AH820] gi|228783849|gb|EEM31899.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816590|gb|EEM62720.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943313|gb|AEA19208.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + FKA LK Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86 >gi|78046640|ref|YP_362815.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035070|emb|CAJ22715.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ +++R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 1 MNKTELIDGVAAAADISKAEASRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAV 89 >gi|56477449|ref|YP_159038.1| DNA-binding protein HU-alpha [Aromatoleum aromaticum EbN1] gi|56313492|emb|CAI08137.1| DNA-binding protein hu-alpha [Aromatoleum aromaticum EbN1] Length = 92 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V++++ +SR + R ++T+ + I + GE + + F +F V ++ R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI RV F A + LK I Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAI 89 >gi|262384433|ref|ZP_06077568.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|262294136|gb|EEY82069.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] Length = 91 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + R +LV+S+ +E GL K+ R V + +R GE+I + F +F Q+ R+ Sbjct: 1 MNRGELVQSLVEETGLP-KNVVRTVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV I PR V FKA S L K + Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKEL 89 >gi|33597659|ref|NP_885302.1| integration host factor beta-subunit [Bordetella parapertussis 12822] gi|81713696|sp|Q7W605|IHFB_BORPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|33574087|emb|CAE38412.1| integration host factor beta-subunit [Bordetella parapertussis] Length = 119 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + ++V FKA L++R+ Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV 90 >gi|317056256|ref|YP_004104723.1| histone family protein DNA-binding protein [Ruminococcus albus 7] gi|315448525|gb|ADU22089.1| histone family protein DNA-binding protein [Ruminococcus albus 7] Length = 92 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ G S+K++ + + T+ + I + GE + + F TF V+ + ++V Sbjct: 1 MNKAELINVIAEKGGYSKKEADKALATVLDSITGALENGEKVTLVGFGTFEVRDRAAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T V + R+V FKA S LK Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALK 86 >gi|254432410|ref|ZP_05046113.1| DNA-binding protein HU [Cyanobium sp. PCC 7001] gi|197626863|gb|EDY39422.1| DNA-binding protein HU [Cyanobium sp. PCC 7001] Length = 91 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D ++ V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89 >gi|58038619|ref|YP_190583.1| integration host factor beta-subunit [Gluconobacter oxydans 621H] gi|58001033|gb|AAW59927.1| Integration host factor beta-subunit [Gluconobacter oxydans 621H] Length = 101 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ + L +D R V +F+EI + RG+ +++ F F +++ +R Sbjct: 1 MTRSELIAELAAAYPHLLTRDIERIVHAVFDEIGAALARGDRVELRGFGAFLPRERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T V ++ + V FK L++R+ + RK Sbjct: 61 GRNPRTGDVVPVEEKSVPFFKVGKELRERVNQRLSTRK 98 >gi|33863662|ref|NP_895222.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9313] gi|124022281|ref|YP_001016588.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9303] gi|33635245|emb|CAE21570.1| Bacterial DNA-binding protein [Prochlorococcus marinus str. MIT 9313] gi|123962567|gb|ABM77323.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9303] Length = 91 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T Q++KI +RV F A + K R+ Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKMFKDRV 89 >gi|327479102|gb|AEA82412.1| HU family DNA-binding protein [Pseudomonas stutzeri DSM 4166] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ LS+ + R + + +EI ++ R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT Q V I V FK +LK + Sbjct: 63 PQTGQPVTIKASNTVAFKPGKMLKDAV 89 >gi|292487472|ref|YP_003530344.1| transcriptional regulator HU subunit beta [Erwinia amylovora CFBP1430] gi|292898714|ref|YP_003538083.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946] gi|291198562|emb|CBJ45670.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946] gi|291552891|emb|CBA19936.1| transcriptional regulator HU subunit beta [Erwinia amylovora CFBP1430] gi|312171577|emb|CBX79835.1| transcriptional regulator HU subunit beta [Erwinia amylovora ATCC BAA-2158] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ E +S+ + R + + +S G+ + + F TF V+++ RVG Sbjct: 1 MNKSQLIDKIAAEADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKALKDAV 89 >gi|269798417|ref|YP_003312317.1| histone family protein DNA-binding protein [Veillonella parvula DSM 2008] gi|282850654|ref|ZP_06260033.1| DNA-binding protein HU [Veillonella parvula ATCC 17745] gi|294792285|ref|ZP_06757433.1| DNA-binding protein HU [Veillonella sp. 6_1_27] gi|294794144|ref|ZP_06759281.1| DNA-binding protein HU [Veillonella sp. 3_1_44] gi|269095046|gb|ACZ25037.1| histone family protein DNA-binding protein [Veillonella parvula DSM 2008] gi|282580147|gb|EFB85551.1| DNA-binding protein HU [Veillonella parvula ATCC 17745] gi|294455714|gb|EFG24086.1| DNA-binding protein HU [Veillonella sp. 3_1_44] gi|294457515|gb|EFG25877.1| DNA-binding protein HU [Veillonella sp. 6_1_27] Length = 99 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAQELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + + I + FKA LK+++ Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQV 89 >gi|94497483|ref|ZP_01304053.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] gi|94423114|gb|EAT08145.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] Length = 90 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++++ GLS+ D+T+ V +F+ I + +G+ +++ F TF V Q+ + G Sbjct: 1 MNKQDLISTVAESSGLSKNDATKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSV 89 >gi|213968551|ref|ZP_03396694.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|301383523|ref|ZP_07231941.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato Max13] gi|302062573|ref|ZP_07254114.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato K40] gi|302130240|ref|ZP_07256230.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926839|gb|EEB60391.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|330967966|gb|EGH68226.1| DNA-binding protein HU family [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017834|gb|EGH97890.1| DNA-binding protein HU family [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 91 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|53804258|ref|YP_113869.1| integration host factor subunit beta [Methylococcus capsulatus str. Bath] gi|81682135|sp|Q608S8|IHFB_METCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|53758019|gb|AAU92310.1| integration host factor, beta subunit [Methylococcus capsulatus str. Bath] Length = 95 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S++ ++ LS +D + + + ++ GE I+I F +F + + RV Sbjct: 1 MTKSELIESLAGKYPHLSPRDIEHAIKEMIGCMSEALAGGERIEIRGFGSFSLHHRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRV FK L+ R+ Sbjct: 61 GRNPKTGESVHLPSRRVPHFKPGKELRDRV 90 >gi|114563759|ref|YP_751272.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] gi|114335052|gb|ABI72434.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 91 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAV 89 >gi|227358099|ref|ZP_03842441.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906] gi|227161834|gb|EEI46866.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906] Length = 96 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 50/91 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K++ ++ L+ I+ +++ + R V + I +S +G+ + + F TF V+ + +R Sbjct: 4 KSVNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I +V F+A LK + Sbjct: 64 TGRNPQTGKEIQIAAAKVPAFRAGKGLKDAV 94 >gi|39998222|ref|NP_954173.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|39985168|gb|AAR36523.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|298507158|gb|ADI85881.1| histone-like protein [Geobacter sulfurreducens KN400] Length = 94 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 4/97 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K L++ + + V + + + D+ +G+ + + F +F V + +R G Sbjct: 1 MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN QT +E+KI +V F+ LK D + G+K Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK----DAVAGKK 93 >gi|66048251|ref|YP_238092.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|63258958|gb|AAY40054.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae pv. syringae B728a] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|302344529|ref|YP_003809058.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301641142|gb|ADK86464.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 93 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D++ + L++ ++ + I ++ G+ + +S F + V+ K R Sbjct: 2 TLTKADIIARVYANGQLTKAEAADSIEESLRLIKEALGSGDEVLVSGFGKWSVRDKNQRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + + PRRVV F+ S +LK +I Sbjct: 62 GRNPQTGDPLTLPPRRVVTFRPSRVLKAKI 91 >gi|209883627|ref|YP_002287484.1| integration host factor, beta subunit [Oligotropha carboxidovorans OM5] gi|226709797|sp|B6JCN9|IHFB_OLICO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|209871823|gb|ACI91619.1| integration host factor, beta subunit [Oligotropha carboxidovorans OM5] Length = 106 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 GRN +T + V ++ + V FK +++R+ D D T PS Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD------GLDGATPPS 102 >gi|261401368|ref|ZP_05987493.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970] gi|313668345|ref|YP_004048629.1| DNA-binding protein [Neisseria lactamica ST-640] gi|269208663|gb|EEZ75118.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970] gi|313005807|emb|CBN87261.1| putative DNA-binding protein [Neisseria lactamica 020-06] Length = 89 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + D+ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86 >gi|189461332|ref|ZP_03010117.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM 17136] gi|189431861|gb|EDV00846.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM 17136] Length = 96 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 48/85 (56%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L+ +S+ G + KD+ R +T++ + + G+ I I F TF VK+K R+ N Sbjct: 5 ELIGELSRRLGYTNKDAARLLTSVTGIMGEELQEGKVIAIQDFGTFEVKKKMERITVNPV 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T Q + P+ ++ F+ S++ K+R+ Sbjct: 65 TKQRFLVPPKLILNFRPSNLWKERL 89 >gi|118602405|ref|YP_903620.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567344|gb|ABL02149.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ D++R + + I + + ++++ F +F V+ + +R G Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK+ + Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89 >gi|312867148|ref|ZP_07727358.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405] gi|322389040|ref|ZP_08062608.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903] gi|311097277|gb|EFQ55511.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405] gi|321144263|gb|EFX39673.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E+KI +V FKA LK+ + Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALKEAV 90 >gi|300857295|ref|YP_003782279.1| putative DNA-binding protein HU [Clostridium ljungdahlii DSM 13528] gi|300437410|gb|ADK17177.1| predicted DNA-binding protein HU [Clostridium ljungdahlii DSM 13528] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+++ L++KD + + ++ +G+ +++ F TF +++ R+G Sbjct: 1 MNKSELIAGIAEKSKLTKKDVEAALKGFIESVEETLEKGDKVQLVGFGTFETRKRAERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V VFKA K R+ Sbjct: 61 RNPRTKEEIKIPESTVPVFKAGKEFKDRV 89 >gi|291515643|emb|CBK64853.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 86 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ V++I+ + +S+ D+ + V + S GE + ++ TF V+QK RVG Sbjct: 1 MNKAQFVEAIALDANISKIDARKAVDAMIRVTVQSLREGERLTLTGLGTFSVQQKSERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN +T VKI PR+V+ F+ ++ Sbjct: 61 RNPRTGAAVKIPPRKVIKFRPTA 83 >gi|94971730|ref|YP_593778.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|94553780|gb|ABF43704.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 93 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+ G+S+ ++ + L + + S +GE + + F TF V Q+ +R G Sbjct: 1 MNKADLVDKIAAASGISKTSASEAIDALVDGVTTSLKKGERVTLVGFGTFAVSQRRARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI R+V F LKK + Sbjct: 61 RNPQTGSVIKIAARKVAKFTPGVELKKAV 89 >gi|83720765|ref|YP_442176.1| integration host factor subunit beta [Burkholderia thailandensis E264] gi|167581054|ref|ZP_02373928.1| integration host factor subunit beta [Burkholderia thailandensis TXDOH] gi|167619132|ref|ZP_02387763.1| integration host factor subunit beta [Burkholderia thailandensis Bt4] gi|257138365|ref|ZP_05586627.1| integration host factor subunit beta [Burkholderia thailandensis E264] gi|123767673|sp|Q2SY23|IHFB_BURTA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|83654590|gb|ABC38653.1| integration host factor, beta subunit [Burkholderia thailandensis E264] Length = 107 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D R + K+D Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV--DGRAGEPLKND 101 >gi|84498266|ref|ZP_00997063.1| DNA-binding protein HU [Janibacter sp. HTCC2649] gi|84381766|gb|EAP97649.1| DNA-binding protein HU [Janibacter sp. HTCC2649] Length = 92 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+DL + + LS D+ R + + I D+ V G+ + + F F +++ +R G Sbjct: 1 MNRTDLKNKVVDKAELSGADADRAIDAVLGAITDALVAGDKVSLPGFGIFETRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I FK ++ LK+++ Sbjct: 61 RNPQTGEALEIKASTAAAFKPAAELKRKL 89 >gi|330878102|gb|EGH12251.1| DNA-binding protein HU family [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 92 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|224542695|ref|ZP_03683234.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM 15897] gi|224524405|gb|EEF93510.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM 15897] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 50/84 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV+ +++ L++ D+ R + L + + + V G+ + + TF V+++ +R G N Sbjct: 3 KNELVEKVAEGASLTKADAERAINALVDAVSGALVEGDKVALKGLGTFEVRERKARTGIN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 +T + ++I +V FKASS LK Sbjct: 63 PRTRETIEIPASKVPAFKASSTLK 86 >gi|119945204|ref|YP_942884.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37] gi|119863808|gb|ABM03285.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +I++ +S+ + R + + + V G+ + + F F VK++ +R G Sbjct: 1 MNKGQLIDNIAESADISKAAAGRALDAFIESVTGALVEGDNVSLIGFGAFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QTN+ ++I +V FKA LK I Sbjct: 61 RNPQTNEPIQIAAAKVPAFKAGKSLKDAI 89 >gi|313829872|gb|EFS67586.1| DNA-binding protein HU [Propionibacterium acnes HL007PA1] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L ++I + +GE +++ T ++ +R G Sbjct: 1 MTKSELIKTVAKQASLTEAQTNEAVKALTDDITAALAKGEKVQLPGLFTAETVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|238919015|ref|YP_002932529.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146] gi|238868583|gb|ACR68294.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146] Length = 90 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I++ +S+ + R + + +S G+A+ + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESVQEGDAVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEINIPAAKVPGFRAGKALKDAV 89 >gi|92115698|ref|YP_575427.1| integration host factor subunit beta [Nitrobacter hamburgensis X14] gi|123083883|sp|Q1QS30|IHFB_NITHX RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91798592|gb|ABE60967.1| integration host factor, beta subunit [Nitrobacter hamburgensis X14] Length = 101 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + V FK +++R+ Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERL 90 >gi|297564907|ref|YP_003683879.1| histone family protein DNA-binding protein [Meiothermus silvanus DSM 9946] gi|296849356|gb|ADH62371.1| histone family protein DNA-binding protein [Meiothermus silvanus DSM 9946] Length = 96 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT T++DL+ I+ G+ +KD+ V + + D+ G ++++ F TF V+++ +R Sbjct: 4 KTKTKADLIDMIASSSGMKKKDAKTAVDHFLSHLQDALASGNKVQLTGFGTFEVRKRKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T Q++KI FK LK+++ Sbjct: 64 TGVKPGTTQKIKIPASSYPAFKPGKALKEKV 94 >gi|239817235|ref|YP_002946145.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|239803812|gb|ACS20879.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] Length = 93 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ LS+ D+ R + ++ + VRGE +++ F TF V + R G Sbjct: 1 MNKTELIAAIAEDTNLSKADAGRAFDSALEQLSRALVRGETVQLIGFGTFSVADRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +++ I + F A LK I Sbjct: 61 RNPSTGEQITIKASKSAKFAAGKALKDAI 89 >gi|239907543|ref|YP_002954284.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239797409|dbj|BAH76398.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 92 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K++ +++ L + + FV + F I + V G+ +++ F +F VK+ G Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +V++ P+++ FK K + Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYL 89 >gi|53720124|ref|YP_109110.1| integration host factor subunit beta [Burkholderia pseudomallei K96243] gi|53724786|ref|YP_102240.1| integration host factor subunit beta [Burkholderia mallei ATCC 23344] gi|76810828|ref|YP_334371.1| integration host factor subunit beta [Burkholderia pseudomallei 1710b] gi|121598535|ref|YP_993873.1| integration host factor subunit beta [Burkholderia mallei SAVP1] gi|124385018|ref|YP_001026936.1| integration host factor subunit beta [Burkholderia mallei NCTC 10229] gi|126441395|ref|YP_001059900.1| integration host factor subunit beta [Burkholderia pseudomallei 668] gi|126451382|ref|YP_001079777.1| integration host factor subunit beta [Burkholderia mallei NCTC 10247] gi|126452191|ref|YP_001067189.1| integration host factor subunit beta [Burkholderia pseudomallei 1106a] gi|134277133|ref|ZP_01763848.1| integration host factor, beta subunit [Burkholderia pseudomallei 305] gi|166999733|ref|ZP_02265567.1| integration host factor, beta subunit [Burkholderia mallei PRL-20] gi|167720665|ref|ZP_02403901.1| integration host factor subunit beta [Burkholderia pseudomallei DM98] gi|167739652|ref|ZP_02412426.1| integration host factor subunit beta [Burkholderia pseudomallei 14] gi|167816857|ref|ZP_02448537.1| integration host factor subunit beta [Burkholderia pseudomallei 91] gi|167825257|ref|ZP_02456728.1| integration host factor subunit beta [Burkholderia pseudomallei 9] gi|167846761|ref|ZP_02472269.1| integration host factor subunit beta [Burkholderia pseudomallei B7210] gi|167895349|ref|ZP_02482751.1| integration host factor subunit beta [Burkholderia pseudomallei 7894] gi|167903735|ref|ZP_02490940.1| integration host factor subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167911984|ref|ZP_02499075.1| integration host factor subunit beta [Burkholderia pseudomallei 112] gi|167919975|ref|ZP_02507066.1| integration host factor subunit beta [Burkholderia pseudomallei BCC215] gi|217420526|ref|ZP_03452031.1| integration host factor, beta subunit [Burkholderia pseudomallei 576] gi|237813294|ref|YP_002897745.1| integration host factor, beta subunit [Burkholderia pseudomallei MSHR346] gi|238561682|ref|ZP_00441665.2| integration host factor, beta subunit [Burkholderia mallei GB8 horse 4] gi|242317605|ref|ZP_04816621.1| integration host factor, beta subunit [Burkholderia pseudomallei 1106b] gi|254177019|ref|ZP_04883676.1| integration host factor, beta subunit [Burkholderia mallei ATCC 10399] gi|254181090|ref|ZP_04887688.1| integration host factor, beta subunit [Burkholderia pseudomallei 1655] gi|254191994|ref|ZP_04898494.1| integration host factor, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195591|ref|ZP_04902018.1| integration host factor, beta subunit [Burkholderia pseudomallei S13] gi|254203924|ref|ZP_04910284.1| integration host factor, beta subunit [Burkholderia mallei FMH] gi|254208904|ref|ZP_04915252.1| integration host factor, beta subunit [Burkholderia mallei JHU] gi|254258262|ref|ZP_04949316.1| integration host factor, beta subunit [Burkholderia pseudomallei 1710a] gi|254360041|ref|ZP_04976311.1| integration host factor, beta subunit [Burkholderia mallei 2002721280] gi|81685156|sp|Q62M28|IHFB_BURMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81690265|sp|Q63S07|IHFB_BURPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123598384|sp|Q3JPY2|IHFB_BURP1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709777|sp|A3MHP1|IHFB_BURM7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709778|sp|A2S4R7|IHFB_BURM9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709779|sp|A1V6M0|IHFB_BURMS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709780|sp|A3NXW8|IHFB_BURP0 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709781|sp|A3NC29|IHFB_BURP6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|52210538|emb|CAH36521.1| integration host factor beta-subunit [Burkholderia pseudomallei K96243] gi|52428209|gb|AAU48802.1| integration host factor, beta subunit [Burkholderia mallei ATCC 23344] gi|76580281|gb|ABA49756.1| integration host factor, beta subunit [Burkholderia pseudomallei 1710b] gi|121227345|gb|ABM49863.1| integration host factor, beta subunit [Burkholderia mallei SAVP1] gi|124293038|gb|ABN02307.1| integration host factor, beta subunit [Burkholderia mallei NCTC 10229] gi|126220888|gb|ABN84394.1| integration host factor, beta subunit [Burkholderia pseudomallei 668] gi|126225833|gb|ABN89373.1| integration host factor, beta subunit [Burkholderia pseudomallei 1106a] gi|126244252|gb|ABO07345.1| integration host factor, beta subunit [Burkholderia mallei NCTC 10247] gi|134250783|gb|EBA50862.1| integration host factor, beta subunit [Burkholderia pseudomallei 305] gi|147745436|gb|EDK52516.1| integration host factor, beta subunit [Burkholderia mallei FMH] gi|147750780|gb|EDK57849.1| integration host factor, beta subunit [Burkholderia mallei JHU] gi|148029281|gb|EDK87186.1| integration host factor, beta subunit [Burkholderia mallei 2002721280] gi|157987816|gb|EDO95581.1| integration host factor, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160698060|gb|EDP88030.1| integration host factor, beta subunit [Burkholderia mallei ATCC 10399] gi|169652337|gb|EDS85030.1| integration host factor, beta subunit [Burkholderia pseudomallei S13] gi|184211629|gb|EDU08672.1| integration host factor, beta subunit [Burkholderia pseudomallei 1655] gi|217395938|gb|EEC35955.1| integration host factor, beta subunit [Burkholderia pseudomallei 576] gi|237504544|gb|ACQ96862.1| integration host factor, beta subunit [Burkholderia pseudomallei MSHR346] gi|238524131|gb|EEP87566.1| integration host factor, beta subunit [Burkholderia mallei GB8 horse 4] gi|242140844|gb|EES27246.1| integration host factor, beta subunit [Burkholderia pseudomallei 1106b] gi|243064226|gb|EES46412.1| integration host factor, beta subunit [Burkholderia mallei PRL-20] gi|254216951|gb|EET06335.1| integration host factor, beta subunit [Burkholderia pseudomallei 1710a] Length = 107 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D R + K+D Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV--DGRAGEPLKND 101 >gi|23013445|ref|ZP_00053339.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 90 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+ + V +F I + G+ +++ F TF V + + G Sbjct: 1 MNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++KI + FKA LK I Sbjct: 61 RNPRTGEKIKIPASKQPKFKAGKGLKDGI 89 >gi|309972413|gb|ADO95614.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2846] Length = 90 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S +GE +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89 >gi|301308636|ref|ZP_07214588.1| putative virulence-associated protein [Bacteroides sp. 20_3] gi|300833160|gb|EFK63778.1| putative virulence-associated protein [Bacteroides sp. 20_3] Length = 91 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+S+ +E GL + V L + GE+I + F +F Q+ R+ Sbjct: 1 MNRGELVQSLVEETGLPKNVVRTVVNALPTVVAKGMREGESISMKGFGSFVPWQQSERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +EV I PR V FKA S L K + Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKEL 89 >gi|256830230|ref|YP_003158958.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256579406|gb|ACU90542.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 90 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ GL++ ++ R +T + ++ V + + ++ F TF V+++ +R G Sbjct: 1 MTKAELVAKMAEKAGLTKANAERALTEFLKAVQETLVTEKKMTLTGFGTFVVEERQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI +VV F+ LK I Sbjct: 61 RNPRTGEELKIPACKVVKFRPGKELKDAI 89 >gi|227879097|ref|ZP_03996986.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256843086|ref|ZP_05548574.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN] gi|256850262|ref|ZP_05555691.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US] gi|262046346|ref|ZP_06019308.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US] gi|293379769|ref|ZP_06625901.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295692882|ref|YP_003601492.1| DNA-binding protein hu [Lactobacillus crispatus ST1] gi|227861338|gb|EEJ68968.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256614506|gb|EEU19707.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN] gi|256712899|gb|EEU27891.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US] gi|260573217|gb|EEX29775.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US] gi|290923678|gb|EFE00549.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295030988|emb|CBL50467.1| DNA-binding protein HU [Lactobacillus crispatus ST1] Length = 91 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++K V + + I ++ +GE +++ F TF V+ + +R GRN Sbjct: 4 KAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I V FK LK Sbjct: 64 PQTGDEIEIPASEVPAFKPGKALK 87 >gi|119469331|ref|ZP_01612270.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium TW-7] gi|119447195|gb|EAW28464.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium TW-7] Length = 89 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++K L++KDS +T++ I S G+ ++I+ F TF + +R G Sbjct: 1 MNKTQLIAEMAKHSELTKKDSQAALTSIQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I+ VFK + LK R+ Sbjct: 61 RNPQTGETIEIEGANKAVFKPAKALKDRL 89 >gi|156740686|ref|YP_001430815.1| histone family protein DNA-binding protein [Roseiflexus castenholzii DSM 13941] gi|156232014|gb|ABU56797.1| histone family protein DNA-binding protein [Roseiflexus castenholzii DSM 13941] Length = 92 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ S+K++ V I ++ RGE + ++ F TF V+Q+ +R G Sbjct: 1 MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT ++ I R F ASS LK + + Sbjct: 61 VNPQTRSKIHIPATRTPGFSASSTLKNAVKE 91 >gi|308185911|ref|YP_003930042.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|308056421|gb|ADO08593.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] Length = 93 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+ + +R Sbjct: 2 KRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E+ I +V F+A LK + Sbjct: 62 TGRNPQTGKEITIPAGKVPGFRAGKALKDAV 92 >gi|228912344|ref|ZP_04076038.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228847292|gb|EEM92252.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] Length = 93 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 4 MNKTELTKVVAEKAVLTQKDADAATQAVLDTITSALANEEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK+ + Sbjct: 64 RNPQTGEEMQIAASKAPAFKAGKELKEAV 92 >gi|85714140|ref|ZP_01045129.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A] gi|85699266|gb|EAQ37134.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A] Length = 101 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 10/106 (9%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN +T + V +D + V FK +++R+ N+++ TS Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERL---------NRENATS 97 >gi|332981382|ref|YP_004462823.1| nucleoid protein Hbs [Mahella australiensis 50-1 BON] gi|332699060|gb|AEE96001.1| bacterial nucleoid protein Hbs [Mahella australiensis 50-1 BON] Length = 91 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +++KD+ + + + + ++ V G+ +++ F TF V + +R G Sbjct: 1 MNKAELIAKMAEKGEMTKKDAEKALNAFVDAVTEALVNGDTVQLVGFGTFRVSPRSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 R+ QT +E+ I + VFKA LK Sbjct: 61 RDPQTQKEIMIPASKAPVFKAGKALK 86 >gi|332535436|ref|ZP_08411223.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] gi|332035160|gb|EGI71672.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] Length = 91 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ +TR + + S G+++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I + FKA LK ++ Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQV 89 >gi|218710171|ref|YP_002417792.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] gi|218323190|emb|CAV19367.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] Length = 97 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+ ++ LV+SI++ +S+ + R + + + G+ + + F TF V+ + + Sbjct: 5 GKTVNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAA 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T +E++I +V FKA LK Sbjct: 65 RTGRNPKTGEEIQIAEAKVPGFKAGKALK 93 >gi|114565657|ref|YP_752811.1| DNA-binding protein HU [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336592|gb|ABI67440.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 90 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++ + G+++KD + V F+ + + +++ F TF V+ + +R G Sbjct: 1 MNKTELVGQVAAKTGMTKKDVEKVVNAFFDTVEGVLKEDDKVQLIGFGTFEVRARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK ++ Sbjct: 61 RNPQTGEEINIPATKVPAFKAGKALKDALV 90 >gi|154248715|ref|YP_001409540.1| histone family protein DNA-binding protein [Fervidobacterium nodosum Rt17-B1] gi|154152651|gb|ABS59883.1| histone family protein DNA-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 91 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 48/84 (57%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 LV +++++ L +KD V +F I ++ +GE +++ F TF VK+ R G N +T Sbjct: 6 LVNAVAEKTQLKKKDVKAVVDAVFETIAEALEKGEKVQLVDFGTFEVKKMAGRTGVNPRT 65 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 ++KI R+V F+ +LK ++ Sbjct: 66 KSKIKIPSRKVPKFRPGKVLKSKV 89 >gi|113461674|ref|YP_719743.1| DNA-binding protein HU [Haemophilus somnus 129PT] gi|112823717|gb|ABI25806.1| DNA-binding protein HU [Haemophilus somnus 129PT] Length = 91 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S GEA+++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEAVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F A LK + Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALKDSV 89 >gi|87198191|ref|YP_495448.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87133872|gb|ABD24614.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 93 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+++++KE G+ ++ R V F+EI G +++ F F +++ +R Sbjct: 1 MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ ++V FKA +++R+ D Sbjct: 61 GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD 93 >gi|73542253|ref|YP_296773.1| integration host factor subunit beta [Ralstonia eutropha JMP134] gi|123760154|sp|Q46Y54|IHFB_RALEJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|72119666|gb|AAZ61929.1| Integration host factor, beta subunit [Ralstonia eutropha JMP134] Length = 137 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI---MDDMRGRKCNKDDVTSPSG 112 GRN ++ + V + +RV FKA L++R+ + G N +PSG Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRNLTPSSGGSGNGHLTGTPSG 112 >gi|313113523|ref|ZP_07799112.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255] gi|310624250|gb|EFQ07616.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255] Length = 89 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + + V +F + + GE I IS F TF ++++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAEQAVNAVFEALSKAMSEGEKITISGFGTFEMRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + I R +VFK LK Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLK 86 >gi|318042379|ref|ZP_07974335.1| DNA-binding protein HU [Synechococcus sp. CB0101] Length = 91 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T ++KI +RV F A + K R+ Sbjct: 61 LNPKTGDKIKIPAKRVPAFTAGKLFKDRV 89 >gi|251793493|ref|YP_003008222.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700] gi|247534889|gb|ACS98135.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700] Length = 90 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S +GEA+++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASSAELNKKQAKAALEATLEAITGSLKKGEAVQLIGFGTFKVNARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+KI +V F + LK Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALK 86 >gi|83945692|ref|ZP_00958037.1| integration host factor beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83850893|gb|EAP88753.1| integration host factor beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 94 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ +++E L +KD R V T+ EI + RG+ +++ F F V+ + R Sbjct: 1 MIKSELIEKLAEENPHLYQKDLERVVNTVLEEITQALERGDRVELRGFGAFSVRNRPPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPRTGEPVSVKEKHVPFFKTGKELRERV 90 >gi|90421919|ref|YP_530289.1| integration host factor subunit beta [Rhodopseudomonas palustris BisB18] gi|123275679|sp|Q21CB6|IHFB_RHOPB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|90103933|gb|ABD85970.1| integration host factor, beta subunit [Rhodopseudomonas palustris BisB18] Length = 101 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD 93 >gi|325579267|ref|ZP_08149223.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392] gi|301155512|emb|CBW14979.1| HU, DNA-binding transcriptional regulator, alpha subunit [Haemophilus parainfluenzae T3T1] gi|325159502|gb|EGC71636.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392] Length = 90 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S +GE +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLAAITGSLKKGEPVQLIGFGTFKVNKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI +V F + LK I Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAI 89 >gi|153812530|ref|ZP_01965198.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174] gi|149831455|gb|EDM86543.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174] Length = 91 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++KE LS+KD + + + + +G I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVASELKKGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI + FKA LK Sbjct: 61 RNPQTGETMKIAASKAPKFKAGKALK 86 >gi|119897364|ref|YP_932577.1| integration host factor subunit beta [Azoarcus sp. BH72] gi|166918539|sp|A1K4D5|IHFB_AZOSB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119669777|emb|CAL93690.1| probable integration host factor, beta-subunit [Azoarcus sp. BH72] Length = 94 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ F L KD+ V + + + D+ RG+ I+I F +F + + RV Sbjct: 1 MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA L++R+ Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKELRERV 90 >gi|146337267|ref|YP_001202315.1| integration host factor subunit beta [Bradyrhizobium sp. ORS278] gi|166918541|sp|A4YJI9|IHFB_BRASO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|146190073|emb|CAL74065.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp. ORS278] Length = 105 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD 93 >gi|320353405|ref|YP_004194744.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320121907|gb|ADW17453.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 94 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++KE LS+ + + V ++F+ I ++ G+ + ++ F TF + +R G Sbjct: 1 MNKTELIDKVAKESALSKSAAEQVVNSVFSAIAEAMKTGDKVTLAGFGTFSTADRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN Q+ +++ I ++ V FK S L Sbjct: 61 RNPQSGEKIAIPAKKAVKFKPGSKL 85 >gi|113953503|ref|YP_731390.1| DNA-binding protein HU [Synechococcus sp. CC9311] gi|113880854|gb|ABI45812.1| DNA-binding protein HU [Synechococcus sp. CC9311] Length = 91 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89 >gi|125717537|ref|YP_001034670.1| DNA-binding protein HU [Streptococcus sanguinis SK36] gi|323352711|ref|ZP_08087681.1| DNA-binding protein HU [Streptococcus sanguinis VMC66] gi|125497454|gb|ABN44120.1| DNA-binding protein HU, putative [Streptococcus sanguinis SK36] gi|322121747|gb|EFX93493.1| DNA-binding protein HU [Streptococcus sanguinis VMC66] gi|324990641|gb|EGC22577.1| DNA-binding protein HU [Streptococcus sanguinis SK353] gi|324993379|gb|EGC25299.1| DNA-binding protein HU [Streptococcus sanguinis SK405] gi|324995308|gb|EGC27220.1| DNA-binding protein HU [Streptococcus sanguinis SK678] gi|325688248|gb|EGD30267.1| DNA-binding protein HU [Streptococcus sanguinis SK72] gi|325690171|gb|EGD32175.1| DNA-binding protein HU [Streptococcus sanguinis SK115] gi|325694095|gb|EGD36013.1| DNA-binding protein HU [Streptococcus sanguinis SK150] gi|325697097|gb|EGD38984.1| DNA-binding protein HU [Streptococcus sanguinis SK160] gi|327458737|gb|EGF05085.1| DNA-binding protein HU [Streptococcus sanguinis SK1057] gi|327461654|gb|EGF07985.1| DNA-binding protein HU [Streptococcus sanguinis SK1] gi|327468999|gb|EGF14471.1| DNA-binding protein HU [Streptococcus sanguinis SK330] gi|327473374|gb|EGF18794.1| DNA-binding protein HU [Streptococcus sanguinis SK408] gi|327489507|gb|EGF21300.1| DNA-binding protein HU [Streptococcus sanguinis SK1058] gi|328945552|gb|EGG39703.1| DNA-binding protein HU [Streptococcus sanguinis SK1087] gi|332361741|gb|EGJ39545.1| DNA-binding protein HU [Streptococcus sanguinis SK1056] gi|332362906|gb|EGJ40699.1| DNA-binding protein HU [Streptococcus sanguinis SK49] gi|332363445|gb|EGJ41228.1| DNA-binding protein HU [Streptococcus sanguinis SK355] gi|332366058|gb|EGJ43814.1| DNA-binding protein HU [Streptococcus sanguinis SK1059] Length = 91 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 49/84 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87 >gi|78224249|ref|YP_385996.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78195504|gb|ABB33271.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 70 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 V L +I + R + IKI+ F F VK+K R GRN QT + + I RRV+ FK S+ Sbjct: 1 MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA 60 Query: 88 ILKKRI 93 +LK I Sbjct: 61 VLKNSI 66 >gi|288818327|ref|YP_003432675.1| integration host factor alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288787727|dbj|BAI69474.1| integration host factor alpha subunit [Hydrogenobacter thermophilus TK-6] gi|308751924|gb|ADO45407.1| histone family protein DNA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 100 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%) Query: 5 ITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TR +V + K+ GLS+K + +F++I + V G+ +KIS F TF V+ R Sbjct: 1 MTRKSIVDDLWKDGNSGLSKKTLYSIINYIFDQINQALVEGQEVKISGFGTFRVRHTKGR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 GRN +T + I P+R V K S L Sbjct: 61 RGRNPRTGEMRVIHPKRTVQLKPSKKL 87 >gi|134095741|ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas arsenicoxydans] gi|152980763|ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp. Marseille] gi|166918551|sp|A4G858|IHFB_HERAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918552|sp|A6T1G0|IHFB_JANMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|133739644|emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas arsenicoxydans] gi|151280840|gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp. Marseille] Length = 101 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L KD+ V T+ + + D+ G+ I+I F +F + + R+ Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN ++ +V + +RV FK L++R+ D M G+ +D Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERV-DAMVGQPIIED 101 >gi|325955263|ref|YP_004238923.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] gi|323437881|gb|ADX68345.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] Length = 92 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + G+S++ + + + + + ++ +GE + + F TF ++ +R G Sbjct: 1 MNKSELIDAIAADAGISKEAAKKALNSFTTNVTNALAKGEKVALVGFGTFSTSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N QT +E++I + V FKA S L Sbjct: 61 INPQTKKEIQIAAKTVAKFKAGSEL 85 >gi|299066877|emb|CBJ38072.1| Integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum CMR15] Length = 140 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ ++V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92 >gi|167621360|ref|ZP_02389991.1| Bacterial nucleoid DNA-binding protein [Burkholderia thailandensis Bt4] Length = 90 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ E GL++ DS + + I + +G + ++ F F V + +R G Sbjct: 1 MNKADLINHVAAETGLTKADSGFALEAVLEGITKALRKGGTVTLTGFGVFSVGARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +E+KI + FKA LK + Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAV 89 >gi|87121305|ref|ZP_01077195.1| DNA-binding protein HU-beta [Marinomonas sp. MED121] gi|86163462|gb|EAQ64737.1| DNA-binding protein HU-beta [Marinomonas sp. MED121] Length = 90 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ + + I + +G+ + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADLSKAAAGNALDATLEAITGALAKGDQVTLVGFGTFAVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGEEIAIKAAKVPGFKAGKGLKDSV 89 >gi|322418662|ref|YP_004197885.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320125049|gb|ADW12609.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 91 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E L++ D+ + +T + + + D G+ + + F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEEAQLTKVDADKALTGILDALTDCLAAGDKVTLVGFGTFSVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT ++++I FK + LK I Sbjct: 61 QNPQTGKKIEIAASTAPKFKPGNTLKALI 89 >gi|322436189|ref|YP_004218401.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321163916|gb|ADW69621.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 93 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M + + DL++ + + GL R + V +F + S V GE I++ F F VK + Sbjct: 1 MRHDLIKQDLIQRVVERTGLVRTKAEAAVDAIFESMKQSLVEGERIELRGFGVFTVKPRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 + VGRN +T EV I P + V FK L Sbjct: 61 TGVGRNPRTGAEVSIAPGKAVRFKPGKDL 89 >gi|291616552|ref|YP_003519294.1| HupB [Pantoea ananatis LMG 20103] gi|317047178|ref|YP_004114826.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] gi|291151582|gb|ADD76166.1| HupB [Pantoea ananatis LMG 20103] gi|316948795|gb|ADU68270.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] gi|327392984|dbj|BAK10406.1| DNA-binding protein HU-beta HupB [Pantoea ananatis AJ13355] Length = 93 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+++ +R G Sbjct: 4 VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAV 92 >gi|268593005|ref|ZP_06127226.1| DNA-binding protein HU [Providencia rettgeri DSM 1131] gi|291311478|gb|EFE51931.1| DNA-binding protein HU [Providencia rettgeri DSM 1131] Length = 90 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I ++ +GE +++ F TF V + +R G Sbjct: 1 MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I V F A LK+ + Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKEAV 89 >gi|77362371|ref|YP_341945.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas haloplanktis TAC125] gi|76877282|emb|CAI89499.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas haloplanktis TAC125] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ +TR + + S G+++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I + FKA LK ++ Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQV 89 >gi|241662464|ref|YP_002980824.1| integration host factor subunit beta [Ralstonia pickettii 12D] gi|309781046|ref|ZP_07675784.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA] gi|240864491|gb|ACS62152.1| integration host factor, beta subunit [Ralstonia pickettii 12D] gi|308920112|gb|EFP65771.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 142 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ ++V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92 >gi|319947464|ref|ZP_08021696.1| DNA-binding protein HU [Streptococcus australis ATCC 700641] gi|315419725|gb|ADU15832.1| histone-like protein [Streptococcus parasanguinis] gi|319746404|gb|EFV98665.1| DNA-binding protein HU [Streptococcus australis ATCC 700641] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT +E+KI +V FKA LK Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALK 87 >gi|239629128|ref|ZP_04672159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519274|gb|EEQ59140.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V+G +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVAEELVKGGKVQLVGFGTFEVAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + I + FKA LK + Sbjct: 61 RNPKTGNAMPIPASKTPKFKAGKALKDEV 89 >gi|332879942|ref|ZP_08447627.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682153|gb|EGJ55065.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GLS+ D+ + V F+ + + G+ + I F + V +K +R Sbjct: 1 MNKTELIDAIAAEAGLSKVDAKKAVEAFFSSVEKALTNGDKVSIVGFGAWSVAEKEARDA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T + +K+ ++VV FKA + L Sbjct: 61 RNPRTGEVIKVPAKKVVKFKAGTEL 85 >gi|255524045|ref|ZP_05391007.1| histone family protein DNA-binding protein [Clostridium carboxidivorans P7] gi|296186901|ref|ZP_06855302.1| putative integration host factor, beta subunit [Clostridium carboxidivorans P7] gi|255512332|gb|EET88610.1| histone family protein DNA-binding protein [Clostridium carboxidivorans P7] gi|296048615|gb|EFG88048.1| putative integration host factor, beta subunit [Clostridium carboxidivorans P7] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+++ L++KD + + ++ +G+ +++ F TF +++ +RVG Sbjct: 1 MNKSELIASIAEKSKLTKKDVEVVLKGFIESVEETLEKGDKVQLVGFGTFETRKRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I V VFKA K ++ Sbjct: 61 RNPRTKEEIEIPESTVPVFKAGKEFKDKV 89 >gi|227485001|ref|ZP_03915317.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172] gi|227236998|gb|EEI87013.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172] Length = 92 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SIS++ GL + +S + + + ++ V+G+ +++ F TF V+ + +R G Sbjct: 1 MNKSELLNSISEKSGLKKVESEKALNAFLETVQEALVKGDKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV +I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90 >gi|295101017|emb|CBK98562.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii L2-6] Length = 89 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + V F + + GE I IS F TF V+++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAEMAVNAAFEALGKAMAEGEKISISGFGTFEVRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + I + +VFK LK Sbjct: 61 INPRTREPITIAASKSIVFKPGKALK 86 >gi|295134367|ref|YP_003585043.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982382|gb|ADF52847.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 90 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ G+S+ + + + + I S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTDLIDAMAEDAGISKAAAKKALESFLGGIETSLKKGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA + L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAV 89 >gi|225375853|ref|ZP_03753074.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans DSM 16841] gi|225212288|gb|EEG94642.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans DSM 16841] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + + + + +GE I++ F TF V ++ R G Sbjct: 1 MNKAELVAAMAEKAELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN Q+ +E+ I + FKA LK Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALK 86 >gi|157364264|ref|YP_001471031.1| histone family protein DNA-binding protein [Thermotoga lettingae TMO] gi|157314868|gb|ABV33967.1| histone family protein DNA-binding protein [Thermotoga lettingae TMO] Length = 90 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +SK+ GL +KD + V +F+ + D+ +GE +++ F +F V++ R G Sbjct: 1 MNKKELVDKVSKKAGLKKKDVKKVVDMVFDTVTDALAKGEKVQLVGFGSFEVRKAAQRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTKKPITIPSRKVPKFKPGKALKEKV 89 >gi|53805229|ref|YP_113051.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath] gi|53758990|gb|AAU93281.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath] Length = 90 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++I+ L++ D+ R + + + I D+ +G+ + + F +F VK++ R G Sbjct: 1 MNKAELIEAIADAANLTKADAGRALDAVIDAITDALKKGDTVSLVGFGSFAVKERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I ++ FK LK + Sbjct: 61 RNPQTGDSITIKAAKIPSFKCGKALKDAV 89 >gi|253584243|ref|ZP_04861441.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] gi|251834815|gb|EES63378.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] Length = 90 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V+ +K G ++K++ R V + D+ V+G+ I + + VK++ +R Sbjct: 1 MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDNITFVGWGKWEVKERAAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QTN++++I+ ++ V FK L +I Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKI 89 >gi|210613799|ref|ZP_03289913.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787] gi|210151008|gb|EEA82016.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 51/86 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +I+++ LS+KD+ + + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTEFISAIAEKAELSKKDAEKALKAFTDVVEEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI+ + FKA LK Sbjct: 61 RNPQTGETMKIEACKAPKFKAGKALK 86 >gi|258645647|ref|ZP_05733116.1| DNA-binding protein HU [Dialister invisus DSM 15470] gi|260403011|gb|EEW96558.1| DNA-binding protein HU [Dialister invisus DSM 15470] Length = 100 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +++KDS + V + + I + V+G+ +++ F TF V+Q+ +R G Sbjct: 1 MNKTELISAVAQTAEMTKKDSEKAVKAVIDVISQALVKGDKVQLIGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + +KI + ++ S LK+R+ Sbjct: 61 HNPATQKAIKIPASKSPAWRVSKQLKERV 89 >gi|134290950|ref|YP_001114719.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] gi|134134139|gb|ABO58464.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] Length = 92 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+++ V + + I D+ R EA+++ F F Q+ +R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +E+ I V F A K + Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 89 >gi|218134789|ref|ZP_03463593.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC 43243] gi|217990174|gb|EEC56185.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC 43243] Length = 126 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++S++ L++KDS + + + + + + E I++ F TF V ++ +R G Sbjct: 36 MNKTELVAAMSEKSELTKKDSEKALKAFMDVVAEELKKDEKIQLVGFGTFEVAKRAARTG 95 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT + +KI + FKA LK Sbjct: 96 KNPQTGKAIKIPATKAPKFKAGKALK 121 >gi|167566113|ref|ZP_02359029.1| histone family protein DNA-binding protein [Burkholderia oklahomensis EO147] Length = 92 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+++ V + + I D+ R EA+++ F F Q+ +R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLVGFGAFSRGQRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +E+ I V F A K + Sbjct: 61 RNPTTGEEIAIAAANTVKFTAGKAFKDAV 89 >gi|315419727|gb|ADU15833.1| histone-like protein [Streptococcus parasanguinis] Length = 91 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT +E+KI +V FKA LK Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALK 87 >gi|188992772|ref|YP_001904782.1| histone-like protein [Xanthomonas campestris pv. campestris str. B100] gi|167734532|emb|CAP52742.1| histone-like protein [Xanthomonas campestris pv. campestris] Length = 132 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 43 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 102 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 103 RNPKTGDSIKIAASKNPAFKAGKALKDAV 131 >gi|167764650|ref|ZP_02436771.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC 43183] gi|167697319|gb|EDS13898.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC 43183] Length = 101 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I++E G+++K+S + + + + + + + + F TF VKQK +R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 N T ++I +RVV F+ S+ L ++ RGRK Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNS-LLKRKRGRK 96 >gi|160871772|ref|ZP_02061904.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella grylli] gi|159120571|gb|EDP45909.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella grylli] Length = 102 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL+ S+ +E LSR + + V F +I + +GE++KIS F + K R Sbjct: 4 LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 GRN QT ++ R VV+F+AS Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQAS 86 >gi|91775279|ref|YP_545035.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] gi|91775423|ref|YP_545179.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] gi|91709266|gb|ABE49194.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] gi|91709410|gb|ABE49338.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] Length = 95 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V T+ + + ++ GE I+I F +F + + R+ Sbjct: 1 MTKSELIANLAARFPQLVVKDAELSVKTILDSMTENLASGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V++ + V FKA L++R+ Sbjct: 61 GRNPKTGEKVQVPEKHVPHFKAGKELRERV 90 >gi|217976340|ref|YP_002360487.1| integration host factor, beta subunit [Methylocella silvestris BL2] gi|254803537|sp|B8EMZ0|IHFB_METSB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|217501716|gb|ACK49125.1| integration host factor, beta subunit [Methylocella silvestris BL2] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L +D + V + +EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITNALSRGDRVELRGFGAFSVKHRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V +D + V FK +++R+ Sbjct: 61 GRNPRTGAHVSVDEKVVPFFKTGKEMRERL 90 >gi|295398577|ref|ZP_06808609.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563] gi|294973178|gb|EFG48973.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563] Length = 106 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 46/85 (54%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV++++ G S+K V +F +I GE +++ F +F V+ + +R GR Sbjct: 18 NKAELVQNVANAVGDSKKSVAPVVDAVFEQIEAFLADGEKVQLIGFGSFEVRDRAARKGR 77 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT E++I +V FK LK Sbjct: 78 NPQTGDEIEIPASKVPAFKPGKALK 102 >gi|289167992|ref|YP_003446261.1| histone-like protein [Streptococcus mitis B6] gi|288907559|emb|CBJ22396.1| histone-like protein [Streptococcus mitis B6] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87 >gi|284009059|emb|CBA76026.1| DNA-binding protein HU-alpha (HU-2) [Arsenophonus nasoniae] Length = 98 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 51/93 (54%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +++T+ + D+V+ + ++ L++ + + L I D+ GE ++ F TF + Sbjct: 5 VNETMKKGDVVQYVMQKANLNKTQAKNALEALIECITDALKEGEQVQFVGFGTFRTNHRA 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R+GRN +T E+KI+ V VF A LK+ + Sbjct: 65 ARIGRNPKTGAELKIEAANVPVFVAGKSLKEAV 97 >gi|270292588|ref|ZP_06198799.1| DNA-binding protein HU [Streptococcus sp. M143] gi|293365596|ref|ZP_06612305.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|306829650|ref|ZP_07462840.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249] gi|307703547|ref|ZP_07640489.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|315613311|ref|ZP_07888220.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296] gi|322375383|ref|ZP_08049896.1| DNA-binding protein HU [Streptococcus sp. C300] gi|331266215|ref|YP_004325845.1| histone-like protein [Streptococcus oralis Uo5] gi|270278567|gb|EFA24413.1| DNA-binding protein HU [Streptococcus sp. M143] gi|291315964|gb|EFE56408.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|304428736|gb|EFM31826.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249] gi|307622954|gb|EFO01949.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|315314546|gb|EFU62589.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296] gi|315419705|gb|ADU15822.1| histone-like protein [Streptococcus oralis] gi|321279646|gb|EFX56686.1| DNA-binding protein HU [Streptococcus sp. C300] gi|326682887|emb|CBZ00504.1| histone-like protein [Streptococcus oralis Uo5] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87 >gi|94270519|ref|ZP_01291761.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93450767|gb|EAT01823.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E +S+ + + V +F+ + ++ +GE I F TF + + ++ Sbjct: 1 MNKKELVEKLAAEGEISKAAADKLVKGVFDNMAEALAKGEKITFPGFGTFETRDRAAKES 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V++ R+ V FK LK ++ Sbjct: 61 RNPRTGEPVQVPARKAVAFKPGKTLKDQV 89 >gi|160935949|ref|ZP_02083323.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC BAA-613] gi|158441191|gb|EDP18908.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC BAA-613] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V+G +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVSEELVKGGKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I+ + FKA LK + Sbjct: 61 RNPKTGKTMTIEASKTPKFKAGKALKDEV 89 >gi|78221576|ref|YP_383323.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78192831|gb|ABB30598.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K L++ + + V + + + D+ +G+ + + F +F V + +R G Sbjct: 1 MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V F+ LK Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK 86 >gi|21230442|ref|NP_636359.1| histone-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21241841|ref|NP_641423.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306] gi|66769564|ref|YP_244326.1| histone-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|84622592|ref|YP_449964.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710932|ref|ZP_02242139.1| histone-like protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188578368|ref|YP_001915297.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A] gi|289664181|ref|ZP_06485762.1| histone-like protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668773|ref|ZP_06489848.1| histone-like protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325914923|ref|ZP_08177255.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325927444|ref|ZP_08188691.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans 91-118] gi|21107221|gb|AAM35959.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306] gi|21112004|gb|AAM40283.1| histone-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574896|gb|AAY50306.1| histone-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|84366532|dbj|BAE67690.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522820|gb|ACD60765.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A] gi|325538816|gb|EGD10480.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325542194|gb|EGD13689.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans 91-118] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 1 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAV 89 >gi|217076815|ref|YP_002334531.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B] gi|217036668|gb|ACJ75190.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B] Length = 92 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +++ +LV I+++ L +KD V +F I D+ +GE +++ F TF V++ R Sbjct: 1 MSKKELVNMIAEKIPELKKKDIKAVVDAVFESISDALAKGEKVQLIGFGTFEVRKAEERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N +T +++KI R+V FK LK+++ Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKV 90 >gi|167563627|ref|ZP_02356543.1| integration host factor subunit beta [Burkholderia oklahomensis EO147] gi|167570789|ref|ZP_02363663.1| integration host factor subunit beta [Burkholderia oklahomensis C6786] Length = 107 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D R + K+D Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV--DGRAGEPLKND 101 >gi|91793844|ref|YP_563495.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] gi|91715846|gb|ABE55772.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKSLKDAV 89 >gi|78355564|ref|YP_387013.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217969|gb|ABB37318.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 97 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 49/85 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++D+V +I ++ +R + V +L + + + A+ IS F F K + Sbjct: 3 GKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86 R GRN QT++ + + PR+VVVF+ S Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLS 87 >gi|260776379|ref|ZP_05885274.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450] gi|261253456|ref|ZP_05946029.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891] gi|323495053|ref|ZP_08100142.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546] gi|260607602|gb|EEX33867.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450] gi|260936847|gb|EEX92836.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891] gi|323310710|gb|EGA63885.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDAFIEAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86 >gi|94263644|ref|ZP_01287453.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94267151|ref|ZP_01290783.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93452119|gb|EAT02793.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93455949|gb|EAT06104.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 92 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+++++ + +++ T+ + D+ G+ I+I F +F VK+ S G Sbjct: 1 MNKSDLIEALATASEIPNREAAAITRTILAAMGDALSDGDNIEIRGFGSFTVKEYDSYYG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++++ P+R+ FK L++R+ Sbjct: 61 RNPKTGEKIRVAPKRMPFFKMGKELRERL 89 >gi|300704749|ref|YP_003746352.1| integration host factor subunit beta [Ralstonia solanacearum CFBP2957] gi|299072413|emb|CBJ43758.1| Integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum CFBP2957] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ ++V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92 >gi|83749857|ref|ZP_00946825.1| Integration host factor beta-subunit [Ralstonia solanacearum UW551] gi|207725367|ref|YP_002255763.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum MolK2] gi|207743934|ref|YP_002260326.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum IPO1609] gi|83723470|gb|EAP70680.1| Integration host factor beta-subunit [Ralstonia solanacearum UW551] gi|206590603|emb|CAQ37565.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum MolK2] gi|206595336|emb|CAQ62263.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum IPO1609] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ ++V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92 >gi|160903339|ref|YP_001568920.1| histone family protein DNA-binding protein [Petrotoga mobilis SJ95] gi|160360983|gb|ABX32597.1| histone family protein DNA-binding protein [Petrotoga mobilis SJ95] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV + +K+ +++KD+ FV + + ++ +GE +K+ F TF V+++ +R G Sbjct: 1 MNKKDLVDAFAKKANVTKKDAESFVDAFVDVVSEALSKGEEVKLVGFGTFKVQKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N QT + +KI + V F LK Sbjct: 61 VNPQTGKAIKIPEKMVPKFVPGKELK 86 >gi|27375853|ref|NP_767382.1| integration host factor subunit beta [Bradyrhizobium japonicum USDA 110] gi|81740124|sp|Q89WE8|IHFB_BRAJA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|27348991|dbj|BAC46007.1| integration host factor beta subunit [Bradyrhizobium japonicum USDA 110] Length = 101 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRD 93 >gi|294012141|ref|YP_003545601.1| integration host factor beta subunit [Sphingobium japonicum UT26S] gi|292675471|dbj|BAI96989.1| integration host factor beta subunit [Sphingobium japonicum UT26S] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++E L+ ++ R V F EI D G +++ F F + + +R Sbjct: 1 MIRSELIQKLAEENPNLNLQEVERIVDLFFKEIVDRLSSGGRVELRGFGAFTTRAREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V +D +RV FK +++R+ Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERL 90 >gi|269796894|ref|YP_003316349.1| nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542] gi|269099079|gb|ACZ23515.1| bacterial nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R+DLV +I+ + GL++ D+ ++ L + +S GEA+K++ + ++ +R Sbjct: 2 SLNRTDLVSAIAGKSGLTKTDADAALSALQEVLVESLSAGEAVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I V A S+LKK + Sbjct: 62 GRNPRTGEEISIPAGFGVKISAGSLLKKAV 91 >gi|21672326|ref|NP_660393.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008343|sp|Q8KA69|DBH_BUCAP RecName: Full=DNA-binding protein HU gi|21622927|gb|AAM67604.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+K ISK+ LS+ + + + I +S +GE+++I F TF V + SR G Sbjct: 1 MNKTQLIKIISKQSNLSKIQIKSTLEKILSAIIESLKKGESVQIVGFGTFKVNSRASRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F + LK I Sbjct: 61 RNPQTGKEIIIPATKVPSFISGKTLKNAI 89 >gi|17545629|ref|NP_519031.1| integration host factor subunit beta [Ralstonia solanacearum GMI1000] gi|21362603|sp|Q8Y0Y3|IHFB_RALSO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|17427922|emb|CAD14612.1| putative integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum GMI1000] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + +RV FKA L++R+ Sbjct: 61 GRNPKSGEKVLVPEKRVPHFKAGKELRERV 90 >gi|300692112|ref|YP_003753107.1| integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum PSI07] gi|299079172|emb|CBJ51840.1| Integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum PSI07] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ ++V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92 >gi|256833715|ref|YP_003162442.1| histone family protein DNA-binding protein [Jonesia denitrificans DSM 20603] gi|256687246|gb|ACV10139.1| histone family protein DNA-binding protein [Jonesia denitrificans DSM 20603] Length = 93 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV +I+ + GL++ D+ ++ L + + + GEA+KI+ + ++ +R Sbjct: 2 ALNRSELVSAIAAKSGLTKTDADAALSALQDVLVEQLSAGEAVKITGLLSVERVERKART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E++I V A SILKK + Sbjct: 62 GRNPRTGEEIEIPAGYGVKISAGSILKKAV 91 >gi|240144365|ref|ZP_04742966.1| DNA-binding protein HU [Roseburia intestinalis L1-82] gi|257203616|gb|EEV01901.1| DNA-binding protein HU [Roseburia intestinalis L1-82] gi|291535593|emb|CBL08705.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis M50/1] gi|291540838|emb|CBL13949.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis XB6B4] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + + + + +GE I++ F TF V ++ R G Sbjct: 1 MNKAELVAAMAEKTELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN Q+ +E+ I + FKA LK Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALK 86 >gi|83745916|ref|ZP_00942973.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|83727606|gb|EAP74727.1| DNA-binding protein HU [Ralstonia solanacearum UW551] Length = 123 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++DL+ ++ + +S+ + R + L I D+ G ++ + F TF V Q+ +R Sbjct: 33 AMNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARA 92 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +KI+ +V FK LK Sbjct: 93 GRNPRTGATIKIEGAKVAKFKPGKALK 119 >gi|322507540|gb|ADX02994.1| Putative bacterial nucleoid DNA-binding protein [Acinetobacter baumannii 1656-2] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + ++I+K+ G+S+ + + T + I S G+ + + F TF VK + +R G Sbjct: 4 VTKKHIAETIAKKVGISKSQAEEALNTFESIIQGSLADGDQVTLVGFGTFAVKDRAARKG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V FK LK+ + Sbjct: 64 RNPKTGEEIQIAATKVPTFKPGKALKEAV 92 >gi|315419713|gb|ADU15826.1| histone-like protein [Streptococcus oralis] gi|315419715|gb|ADU15827.1| histone-like protein [Streptococcus oralis] gi|315419721|gb|ADU15830.1| histone-like protein [Streptococcus oralis] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87 >gi|294083695|ref|YP_003550452.1| histone family protein DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663267|gb|ADE38368.1| histone family protein DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GL++ D+ R V +F I + G ++I F TF V + + G Sbjct: 1 MNKNDLVSEVAESSGLTKADAGRAVDAVFESIQGALKSGGDVRIVGFGTFSVAHRAATTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA + LK+ + Sbjct: 61 RNPRTGETIQIKASKQPKFKAGAPLKEAV 89 >gi|282882471|ref|ZP_06291092.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B] gi|300814663|ref|ZP_07094914.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297613|gb|EFA90088.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B] gi|300511282|gb|EFK38531.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 92 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV SI+ + L++KD+ + + + ++ +GE +++ F TF V+Q+ +R G Sbjct: 1 MNKQELVASIATKSSLTKKDAEKALNGFLASVEEALAKGEKVQLVGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90 >gi|30995375|ref|NP_438591.2| DNA-binding protein HU-alpha [Haemophilus influenzae Rd KW20] gi|145628799|ref|ZP_01784599.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21] gi|145630394|ref|ZP_01786175.1| NADH pyrophosphatase [Haemophilus influenzae R3021] gi|145632675|ref|ZP_01788409.1| DNA-binding protein HU [Haemophilus influenzae 3655] gi|145634573|ref|ZP_01790282.1| NADH pyrophosphatase [Haemophilus influenzae PittAA] gi|145636301|ref|ZP_01791970.1| NADH pyrophosphatase [Haemophilus influenzae PittHH] gi|145638660|ref|ZP_01794269.1| NADH pyrophosphatase [Haemophilus influenzae PittII] gi|145640395|ref|ZP_01795979.1| DNA-binding protein HU [Haemophilus influenzae R3021] gi|148825290|ref|YP_001290043.1| NADH pyrophosphatase [Haemophilus influenzae PittEE] gi|148827627|ref|YP_001292380.1| DNA-binding protein HU [Haemophilus influenzae PittGG] gi|229844410|ref|ZP_04464550.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1] gi|229846516|ref|ZP_04466624.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1] gi|319775643|ref|YP_004138131.1| DNA-binding protein HU [Haemophilus influenzae F3047] gi|1169231|sp|P43722|DBH_HAEIN RecName: Full=DNA-binding protein HU gi|144979269|gb|EDJ88955.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21] gi|144984129|gb|EDJ91566.1| NADH pyrophosphatase [Haemophilus influenzae R3021] gi|144986870|gb|EDJ93422.1| DNA-binding protein HU [Haemophilus influenzae 3655] gi|145268118|gb|EDK08113.1| NADH pyrophosphatase [Haemophilus influenzae PittAA] gi|145270466|gb|EDK10400.1| NADH pyrophosphatase [Haemophilus influenzae PittHH] gi|145272255|gb|EDK12163.1| NADH pyrophosphatase [Haemophilus influenzae PittII] gi|145274981|gb|EDK14843.1| DNA-binding protein HU [Haemophilus influenzae 22.4-21] gi|148715450|gb|ABQ97660.1| NADH pyrophosphatase [Haemophilus influenzae PittEE] gi|148718869|gb|ABQ99996.1| DNA-binding protein HU [Haemophilus influenzae PittGG] gi|229810609|gb|EEP46327.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1] gi|229812659|gb|EEP48348.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1] gi|301169130|emb|CBW28727.1| HU, DNA-binding transcriptional regulator, alpha subunit [Haemophilus influenzae 10810] gi|309750154|gb|ADO80138.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2866] gi|317450234|emb|CBY86450.1| DNA-binding protein HU [Haemophilus influenzae F3047] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89 >gi|188534629|ref|YP_001908426.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia tasmaniensis Et1/99] gi|188029671|emb|CAO97550.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia tasmaniensis Et1/99] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ + +S+ + R + + +S G+ + + F TF V+++ RVG Sbjct: 1 MNKSELIDKIATDADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKTLKDAV 89 >gi|183597477|ref|ZP_02958970.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC 25827] gi|188023227|gb|EDU61267.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC 25827] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I ++ +GE +++ F TF V + R G Sbjct: 1 MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I V F A LK+ + Sbjct: 61 RNPQTREEITIPATNVPAFSAGKALKEAV 89 >gi|148826039|ref|YP_001290792.1| integration host factor subunit alpha [Haemophilus influenzae PittEE] gi|229847462|ref|ZP_04467559.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1] gi|166918506|sp|A5UCA8|IHFA_HAEIE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148716199|gb|ABQ98409.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] gi|229809603|gb|EEP45330.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVAVSARRVVTFKPGQKLRARV 92 >gi|110633525|ref|YP_673733.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1] gi|110284509|gb|ABG62568.1| bacterial nucleoid protein Hbs [Chelativorans sp. BNC1] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GLS+ D+ V +F+ I G +++ F F V ++ + G Sbjct: 1 MNKNELVSAVAEKAGLSKGDAQSAVDAVFSVITGELKSGGDVRLVGFGNFSVSRREASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT EVKI R V F A LK I Sbjct: 61 RNPQTGAEVKIPARNVPKFSAGKGLKDAI 89 >gi|302878113|ref|YP_003846677.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302580902|gb|ADL54913.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 93 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G ++ ++ R + + ++ G+ I + F TF V+++ +R G Sbjct: 1 MNRKELIDALAAKTGSTKTEAERNIAAFIEVVTETLAAGDDIALVGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T E+KI + FKA + LK + Sbjct: 61 RNPATGAELKIAASKQAAFKAGATLKAAV 89 >gi|58580659|ref|YP_199675.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425253|gb|AAW74290.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 145 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 56 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 115 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 116 RNPKTGDSIKIAASKNPAFKAGKALKDAV 144 >gi|257439404|ref|ZP_05615159.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165] gi|257198279|gb|EEU96563.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165] Length = 89 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + V F+ + + GE I IS F TF ++++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAELAVNAAFDALSKAMAEGEKITISGFGTFEIRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + I + +VFK LK Sbjct: 61 INPRTREPITIAASKSIVFKPGKALK 86 >gi|71908179|ref|YP_285766.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71847800|gb|AAZ47296.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 126 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ +++ F L +KD+ VT + I + V G ++I F F + + R Sbjct: 1 MTRSELIALLAERFPQLVQKDAEMAVTEILGAIHAALVHGYRVEIRGFGVFDLNHRTPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V + + V FKA L++R+M Sbjct: 61 ARNPKTGEPVAVPAKWVPAFKAGKELRERVM 91 >gi|300721988|ref|YP_003711268.1| DNA-binding protein HU-beta, NS1 [Xenorhabdus nematophila ATCC 19061] gi|297628485|emb|CBJ89050.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Xenorhabdus nematophila ATCC 19061] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + ++ G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSEALKDGDDVALVGFGTFSVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F++ LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRSGKGLKDAV 94 >gi|110635997|ref|YP_676205.1| integration host factor, beta subunit [Mesorhizobium sp. BNC1] gi|123161580|sp|Q11C35|IHFB_MESSB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|110286981|gb|ABG65040.1| integration host factor, beta subunit [Chelativorans sp. BNC1] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++I+ + L +D V +F+EI ++ +G +++ F F VK + +R Sbjct: 1 MIKSELVQTIANRNPHLFLRDVENIVNAIFDEITEALAQGNRVELRGFGAFSVKNRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK L++R+ D Sbjct: 61 GRNPRTGESVHVEEKWVPFFKTGKELRERLNAD 93 >gi|187927876|ref|YP_001898363.1| integration host factor subunit beta [Ralstonia pickettii 12J] gi|187724766|gb|ACD25931.1| integration host factor, beta subunit [Ralstonia pickettii 12J] Length = 142 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ ++V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGEKVLVPEKRVPHFKAGKELRERV 92 >gi|71906916|ref|YP_284503.1| integration host factor, beta subunit [Dechloromonas aromatica RCB] gi|123733294|sp|Q47GJ8|IHFB_DECAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|71846537|gb|AAZ46033.1| Integration host factor, beta subunit [Dechloromonas aromatica RCB] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + ++ VRG+ I+I F +F + + RV Sbjct: 1 MTKSELIAQLAERFPQLVAKDADFAVKMILDAMSEALVRGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA L++R+ Sbjct: 61 GRNPKSGEKVSVPAKWVPHFKAGKELRERV 90 >gi|117924544|ref|YP_865161.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117608300|gb|ABK43755.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +I+ + GL+++ + V +F+E+ + +GE +++ F F + + R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++ + V FK ++KR+ Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >gi|269792401|ref|YP_003317305.1| histone family protein DNA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100036|gb|ACZ19023.1| histone family protein DNA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 93 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV + K +S+K ++ V +FN I ++ V+G+ +++ F TF V+++ +R Sbjct: 1 MTKADLVNELVKSVEDISKKKASEAVDAIFNIIQEALVKGDKVQLVGFGTFEVQERAARQ 60 Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILK 90 GRN Q + ++I ++ VF+A LK Sbjct: 61 GRNPQDPTKTIEIPAKKAPVFRAGKSLK 88 >gi|167759629|ref|ZP_02431756.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC 35704] gi|167662755|gb|EDS06885.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC 35704] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + LS+KDS + + + + D + +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIADQAELSKKDSEKALKAFIDVVTDELKKDHKVQLVGFGTFEVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI+ + FKA LK Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALK 86 >gi|330961377|gb|EGH61637.1| HU family DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + ++V +I+++ L++ ST + + I D+ R +++ + F TF + +G+R G+N Sbjct: 3 KPEVVAAIAEKADLTKDQSTLVLNAILEHITDALSRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + VKI V FK LK + Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALKDSV 89 >gi|307292730|ref|ZP_07572576.1| integration host factor, beta subunit [Sphingobium chlorophenolicum L-1] gi|306880796|gb|EFN12012.1| integration host factor, beta subunit [Sphingobium chlorophenolicum L-1] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++E L+ ++ R V F EI D G +++ F F + + +R Sbjct: 1 MIRSELIQKLAEENQNLNLQEVERIVDLFFKEIVDRLSTGGRVELRGFGAFTTRARDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V +D +RV FK +++R+ Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERL 90 >gi|17988077|ref|NP_540711.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. 16M] gi|17983827|gb|AAL52975.1| integration host factor beta-subunit [Brucella melitensis bv. 1 str. 16M] Length = 101 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + Sbjct: 5 SKAVIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T + V ++ + V FK L+ R+ Sbjct: 65 ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRL 97 >gi|157369341|ref|YP_001477330.1| histone family protein DNA-binding protein [Serratia proteamaculans 568] gi|157321105|gb|ABV40202.1| histone family protein DNA-binding protein [Serratia proteamaculans 568] Length = 101 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F +F V+++ +R G Sbjct: 12 VNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKEGDDVALVGFGSFTVRERSARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V F+A LK Sbjct: 72 RNPQTGKEIKIAAAKVPAFRAGKALK 97 >gi|319758735|gb|ADV70677.1| nucleoid DNA-binding protein [Streptococcus suis JS14] Length = 89 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGRN 63 Query: 67 LQTNQEVK 74 QT E+K Sbjct: 64 PQTGAEIK 71 >gi|304395502|ref|ZP_07377385.1| histone family protein DNA-binding protein [Pantoea sp. aB] gi|304356796|gb|EFM21160.1| histone family protein DNA-binding protein [Pantoea sp. aB] Length = 93 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 4 VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAV 92 >gi|71282434|ref|YP_268603.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H] gi|71148174|gb|AAZ28647.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+ I++ +S+ + R + +L + G + + F T+ V + +R G Sbjct: 1 MNKSELVEKIAEGADISKASAGRALDSLIGSVTTELANGGDVALVGFGTYKVNDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAV 89 >gi|157151424|ref|YP_001450003.1| DNA-binding histone-like protein HU [Streptococcus gordonii str. Challis substr. CH1] gi|262282714|ref|ZP_06060482.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA] gi|157076218|gb|ABV10901.1| DNA-binding histone-like protein HU [Streptococcus gordonii str. Challis substr. CH1] gi|262262005|gb|EEY80703.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ ++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87 >gi|222055876|ref|YP_002538238.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|221565165|gb|ACM21137.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ + GLS K + + ++F + ++ + G+ I+I F +F VK S +G Sbjct: 1 MNKSELIEALAAKKGLSYKKAEEIINSIFESMTNALLTGDRIEIRGFGSFVVKSYQSYMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKV 89 >gi|300023830|ref|YP_003756441.1| integration host factor subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299525651|gb|ADJ24120.1| integration host factor, beta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 99 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ L +D R + +F+EI D+ RG+ +++ F F VK + SR Sbjct: 1 MIKSELVQKIATANPHLYHRDVERIINVIFDEIVDALSRGDRVELRGFGAFTVKHRASRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L+ R+ Sbjct: 61 GRNPRTGTTVAVAEKFVPFFKTGKELRDRL 90 >gi|115350978|ref|YP_772817.1| integration host factor subunit beta [Burkholderia ambifaria AMMD] gi|134295080|ref|YP_001118815.1| integration host factor subunit beta [Burkholderia vietnamiensis G4] gi|170698414|ref|ZP_02889487.1| integration host factor, beta subunit [Burkholderia ambifaria IOP40-10] gi|171316179|ref|ZP_02905403.1| integration host factor, beta subunit [Burkholderia ambifaria MEX-5] gi|172059983|ref|YP_001807635.1| integration host factor subunit beta [Burkholderia ambifaria MC40-6] gi|122323724|sp|Q0BH90|IHFB_BURCM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709772|sp|B1YV36|IHFB_BURA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709784|sp|A4JCH7|IHFB_BURVG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|115280966|gb|ABI86483.1| integration host factor, beta subunit [Burkholderia ambifaria AMMD] gi|134138237|gb|ABO53980.1| integration host factor, beta subunit [Burkholderia vietnamiensis G4] gi|170136667|gb|EDT04922.1| integration host factor, beta subunit [Burkholderia ambifaria IOP40-10] gi|171098688|gb|EDT43483.1| integration host factor, beta subunit [Burkholderia ambifaria MEX-5] gi|171992500|gb|ACB63419.1| integration host factor, beta subunit [Burkholderia ambifaria MC40-6] Length = 107 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D G DD Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADD 102 >gi|295136313|ref|YP_003586989.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294984328|gb|ADF54793.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS++ G+ + D + T E+ S G+ + + F +F VK + + G Sbjct: 1 MTKADIVANISEKLGMEKGDVQATIETFMEEVKSSLESGDNVYLRGFGSFVVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 RN+ N +KI + FK + I + G K N D Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIF-------VEGVKSNVD 94 >gi|299066734|emb|CBJ37928.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum CMR15] Length = 90 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V Q+ +R G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI+ +V FK LK Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALK 86 >gi|237749146|ref|ZP_04579626.1| integration host factor subunit beta [Oxalobacter formigenes OXCC13] gi|229380508|gb|EEO30599.1| integration host factor subunit beta [Oxalobacter formigenes OXCC13] Length = 97 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ S++ + L KD+ V T+ + + D+ G+ I+I F +F + + RV Sbjct: 1 MTKSELIVSLAGSYPQLLAKDAELTVKTILDAMSDALANGQRIEIRGFGSFALSVRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V ++ +RV FK L++R+ Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRV 90 >gi|325479553|gb|EGC82649.1| DNA-binding protein HU-beta [Anaerococcus prevotii ACS-065-V-Col13] Length = 92 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + +S + + + ++ + GE +++ F TF V+ + +R G Sbjct: 1 MNKSELLINISEKSGLKKSESEKALNAFLETVTEALIEGEKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV +I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90 >gi|251772900|gb|EES53459.1| putative integration host factor, beta-subunit [Leptospirillum ferrodiazotrophum] Length = 91 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++F R++ R + LF E +R G+ +++ F ++ + R Sbjct: 1 MTKSELIIRLARQFPGIRREDAREMLDLFLEAMKEGLRSGDTVELRDFGVLRIRSRSQRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++V ++ R+VV FK S LK R++ Sbjct: 61 ARNPKTGEKVTVEARKVVYFKQSRTLKGRLL 91 >gi|121998363|ref|YP_001003150.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] gi|121589768|gb|ABM62348.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] Length = 91 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL + ++ E G+S++ +T V+ +F I +S GE + I F F V + R G Sbjct: 1 MNKADLAEKVAAETGVSKRVATDAVSAVFTGIEESLASGEDVSIPGFGKFAVVARPERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I V FK + LK+ + Sbjct: 61 RNPQTGELIDIPAGMNVRFKPGAPLKRSV 89 >gi|319938218|ref|ZP_08012616.1| histone family protein DNA-binding protein [Coprobacillus sp. 29_1] gi|319806739|gb|EFW03388.1| histone family protein DNA-binding protein [Coprobacillus sp. 29_1] Length = 92 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+ I+ GL++ + V + D G+ I + F TF V+ + +R G Sbjct: 1 MNKTELVEKIAATAGLTKTQAEAAVNAFVATVTDGLKDGDKITLKGFGTFEVRAREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I +V FKASS LK Sbjct: 61 RNPRTGETMEIAASKVPAFKASSALK 86 >gi|302878589|ref|YP_003847153.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302581378|gb|ADL55389.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 91 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G ++ + + + L I ++ +G++I + F TF V+++ +R G Sbjct: 1 MNRKELIDALATKTGSTKIVAEQNIAALIEVIGETLAKGDSISLVGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+KI +V FK + LK + Sbjct: 61 RNPKTGAELKIAASKVPAFKPGATLKSAV 89 >gi|294851552|ref|ZP_06792225.1| integration host factor [Brucella sp. NVSL 07-0026] gi|294820141|gb|EFG37140.1| integration host factor [Brucella sp. NVSL 07-0026] Length = 101 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + Sbjct: 5 SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T + V ++ + V FK L+ R+ Sbjct: 65 ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRL 97 >gi|229035244|ref|ZP_04189179.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] gi|228728056|gb|EEL79097.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] Length = 90 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L + ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTRVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + FKA LK Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86 >gi|87123689|ref|ZP_01079539.1| DNA binding protein HU [Synechococcus sp. RS9917] gi|88807469|ref|ZP_01122981.1| DNA binding protein HU [Synechococcus sp. WH 7805] gi|116073586|ref|ZP_01470848.1| DNA binding protein HU [Synechococcus sp. RS9916] gi|148240264|ref|YP_001225651.1| DNA-binding protein HU [Synechococcus sp. WH 7803] gi|86168258|gb|EAQ69515.1| DNA binding protein HU [Synechococcus sp. RS9917] gi|88788683|gb|EAR19838.1| DNA binding protein HU [Synechococcus sp. WH 7805] gi|116068891|gb|EAU74643.1| DNA binding protein HU [Synechococcus sp. RS9916] gi|147848803|emb|CAK24354.1| DNA-binding protein HU [Synechococcus sp. WH 7803] Length = 91 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89 >gi|306820791|ref|ZP_07454416.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551181|gb|EFM39147.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 102 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ GL++KDS + + ++ V+ E +++ F TF +++ +R G Sbjct: 1 MNKADLVSKIAEKSGLTKKDSETALNAFMASVEEALVKQEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93 RN + + ++KI + VFKA LK+++ Sbjct: 61 RNPRDPKVKIKIPASKAPVFKAGKGLKEKV 90 >gi|253581050|ref|ZP_04858311.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847713|gb|EES75682.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 92 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++KE LS+KD + + + + G I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAKETNLSKKDVEDVLKSFVDVVSKELKNGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI+ + FKA LK Sbjct: 61 RNPQTGETMKIEASKSPKFKAGKALK 86 >gi|238026537|ref|YP_002910768.1| integration host factor subunit beta [Burkholderia glumae BGR1] gi|237875731|gb|ACR28064.1| Integration host factor, beta subunit [Burkholderia glumae BGR1] Length = 108 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V++ + V FK L++R+ Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV 90 >gi|83311888|ref|YP_422152.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82946729|dbj|BAE51593.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 136 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+ + V +F I + G+ +++ F TF V + + G Sbjct: 47 VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++ I + FKA LK I Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGI 135 >gi|332703826|ref|ZP_08423914.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553975|gb|EGJ51019.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 91 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 52/87 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K+++++ + ++++ V + I DS ++GE ++I F +F +K+ G Sbjct: 1 MNKSELIKTLAEDKDIHVDEASKIVNAFVDSIKDSLLQGERVEIRGFGSFKIKEYKGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T V ++P+R+ F+ LK+ Sbjct: 61 RNPKTGDIVDVEPKRLPFFRPGKELKE 87 >gi|238021485|ref|ZP_04601911.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC 51147] gi|237868465|gb|EEP69471.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC 51147] Length = 101 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+++ GL++ D+ + V + D+ G++I + F TF V ++ +R G Sbjct: 1 MNKSELIEAIAQQAGLTKTDAGKAVDAFTAVVKDALKSGDSIALVGFGTFKVAERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + +KI RV F A LK Sbjct: 61 LNPRTKEAIKIPAARVPKFTAGKTLK 86 >gi|167646182|ref|YP_001683845.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167348612|gb|ABZ71347.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 8 SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 SDLV +++ E L++ + + +F + D+AV+GE + I F F V+ K +R GRN Sbjct: 4 SDLVDAAVAAEPKLTKTQAKALIDGVFKALSDAAVKGEEVSIPGFGKFKVQAKPARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + V F A+ LK + Sbjct: 64 PATGGTIEIAASKKVAFTAAKQLKDAV 90 >gi|258592137|emb|CBE68442.1| DNA-binding protein HU (DNA-binding protein II) (HB) [NC10 bacterium 'Dutch sediment'] Length = 93 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ SI E GL++K + V + + ++ +GE I++ F +F VK K +R G Sbjct: 1 MTKADIA-SIVAERGLAKKQAMEAVEATLDIVKNALKKGEKIQLVGFGSFQVKAKRARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + I R+V+ FK L Sbjct: 60 RNPQTGDPITISARKVLKFKPGKAL 84 >gi|330815898|ref|YP_004359603.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3] gi|327368291|gb|AEA59647.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3] Length = 106 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D R + K+D Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV--DGRAGEPLKND 101 >gi|315419719|gb|ADU15829.1| histone-like protein [Streptococcus gordonii] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ ++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+KI +V FKA LK Sbjct: 64 PQTGKEIKIAASKVPAFKAGKALK 87 >gi|312882504|ref|ZP_07742245.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309369904|gb|EFP97415.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAESADLSKASAGRALDAFIDAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86 >gi|126662500|ref|ZP_01733499.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] gi|126625879|gb|EAZ96568.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] Length = 97 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ GL + D V T E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|237746993|ref|ZP_04577473.1| integration host factor subunit beta [Oxalobacter formigenes HOxBLS] gi|229378344|gb|EEO28435.1| integration host factor subunit beta [Oxalobacter formigenes HOxBLS] Length = 97 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ S++ + L KD+ V T+ + + D+ G+ I+I F +F + + R+ Sbjct: 1 MTKSELIVSLANSYPQLLAKDAELTVKTILDAMADALADGQRIEIRGFGSFALSVRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V ++ +RV FK L++R+ Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRV 90 >gi|186475512|ref|YP_001856982.1| integration host factor subunit beta [Burkholderia phymatum STM815] gi|226709782|sp|B2JF07|IHFB_BURP8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|184191971|gb|ACC69936.1| integration host factor, beta subunit [Burkholderia phymatum STM815] Length = 107 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FK L++R+ Sbjct: 61 GRNPKSGEKVLVPEKHVPHFKPGKELRERV 90 >gi|225626692|ref|ZP_03784731.1| integration host factor, beta subunit [Brucella ceti str. Cudo] gi|306842560|ref|ZP_07475211.1| integration host factor, beta subunit [Brucella sp. BO2] gi|225618349|gb|EEH15392.1| integration host factor, beta subunit [Brucella ceti str. Cudo] gi|306287416|gb|EFM58896.1| integration host factor, beta subunit [Brucella sp. BO2] Length = 117 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + Sbjct: 21 SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T + V ++ + V FK L+ R+ Sbjct: 81 ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRL 113 >gi|163781827|ref|ZP_02176827.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1] gi|159883047|gb|EDP76551.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++K+ G+++K++ + I + +GE I I F VK++ +R G Sbjct: 1 MTKAELVAEVAKQAGITKKEADAALKAAVAAIAKALKKGERIAIPGLGIFTVKKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q ++I R+VV FK + L++ I Sbjct: 61 RNPRTGQVIQIPARKVVAFKPAKDLRESI 89 >gi|37520401|ref|NP_923778.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] gi|35211394|dbj|BAC88773.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] Length = 94 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 52/92 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LVK++++ ++ K++ ++ +F+EI D+ GE + + F TF +++ R G Sbjct: 1 MNKGELVKAVAERTKITLKEADAVISAVFDEIQDTVAGGEKVTLVGFGTFEARKRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +TN+++ I F A K+ ++ + Sbjct: 61 RNPKTNEKMIIPATVAPAFSAGKTFKEAVLTN 92 >gi|269102132|ref|ZP_06154829.1| DNA-binding protein HU-beta [Photobacterium damselae subsp. damselae CIP 102761] gi|268162030|gb|EEZ40526.1| DNA-binding protein HU-beta [Photobacterium damselae subsp. damselae CIP 102761] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAENADISKASAGRALDAFIEAVSDTLKSGDQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIAAAKVPGFKAGKALKDSV 89 >gi|254467848|ref|ZP_05081254.1| integration host factor, beta subunit [beta proteobacterium KB13] gi|207086658|gb|EDZ63941.1| integration host factor, beta subunit [beta proteobacterium KB13] Length = 92 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ +S +F L +KD+ V + + + + G+ I+I F +F + ++ +R+ Sbjct: 1 MTRSELIEKLSSQFQHLLQKDAELVVKNILDSMSSTLNNGKRIEIRGFGSFSLNKRPARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V I + V FKA L+ R+ Sbjct: 61 GRNPKTGEKVHISEKLVPHFKAGKELRSRV 90 >gi|50120090|ref|YP_049257.1| transcriptional regulator HU subunit beta [Pectobacterium atrosepticum SCRI1043] gi|227113468|ref|ZP_03827124.1| transcriptional regulator HU subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328851|ref|ZP_03832875.1| transcriptional regulator HU subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687446|ref|YP_003016636.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822504|ref|YP_003260610.1| transcriptional regulator HU subunit beta [Pectobacterium wasabiae WPP163] gi|49610616|emb|CAG74061.1| DNA-binding protein HU-beta [Pectobacterium atrosepticum SCRI1043] gi|251754024|gb|ACT12100.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606517|gb|ACX89003.1| histone family protein DNA-binding protein [Pectobacterium wasabiae WPP163] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKEGDDVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKTLKDAV 89 >gi|256822124|ref|YP_003146087.1| integration host factor subunit beta [Kangiella koreensis DSM 16069] gi|256795663|gb|ACV26319.1| integration host factor, beta subunit [Kangiella koreensis DSM 16069] Length = 100 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ + K LS +D V ++ +++ +S G+ I+I F +F + + RV Sbjct: 1 MTKSQLIERLVDKNPQLSVRDVELVVKSMIDQMSESLSDGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + VK+D + V FK L++R+ D Sbjct: 61 GRNPKTGESVKLDGKYVPHFKPGKELRERVND 92 >gi|206900402|ref|YP_002251223.1| non-specific DNA-binding protein [Dictyoglomus thermophilum H-6-12] gi|217967896|ref|YP_002353402.1| histone family protein DNA-binding protein [Dictyoglomus turgidum DSM 6724] gi|206739505|gb|ACI18563.1| non-specific DNA-binding protein [Dictyoglomus thermophilum H-6-12] gi|217336995|gb|ACK42788.1| histone family protein DNA-binding protein [Dictyoglomus turgidum DSM 6724] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 53/87 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ + ++++ +++K++T+ V + I ++ +G+ ++ F TF V+++ +R GRN Sbjct: 3 KAEFIAKVAEKAKITKKEATKVVNAVLETITEALSKGDTVQFVGFGTFSVRKRAAREGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T Q +KI +V VF+ L++ + Sbjct: 63 PRTQQPIKIPATKVPVFRPGKELREAV 89 >gi|330806808|ref|YP_004351270.1| DNA-binding protein, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374916|gb|AEA66266.1| Putative DNA-binding protein, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKFLK 86 >gi|194476545|ref|YP_002048724.1| DNA binding protein HU [Paulinella chromatophora] gi|171191552|gb|ACB42514.1| DNA binding protein HU [Paulinella chromatophora] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPTFTAGKMFKDRV 89 >gi|237814623|ref|ZP_04593621.1| integration host factor, beta subunit [Brucella abortus str. 2308 A] gi|237789460|gb|EEP63670.1| integration host factor, beta subunit [Brucella abortus str. 2308 A] Length = 117 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + Sbjct: 21 SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T + V ++ + V FK L+ R+ Sbjct: 81 ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRL 113 >gi|154505532|ref|ZP_02042270.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC 29149] gi|153794190|gb|EDN76610.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC 29149] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ +S+KD+ + + + + + GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAIAEQAEISKKDAEKALKAFVDVVTEQLKEGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI + FKA LK Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALK 86 >gi|293392542|ref|ZP_06636862.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] gi|291424944|gb|EFE98153.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F +F V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTDSLKEGDDVALVGFGSFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+A LK + Sbjct: 61 RNPQTGKEIKIAAAKVPAFRAGKALKDAV 89 >gi|94497991|ref|ZP_01304555.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] gi|94422574|gb|EAT07611.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] Length = 96 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++E GL+ + R V F EI D G +++ F F + + +R Sbjct: 1 MIRSELIQKLAEENPGLTVPEVERIVDLFFREIVDRLASGGRVELRGFGAFTTRARDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V + +RV FK +++R+ Sbjct: 61 GRNPRTGEQVPVCAKRVPYFKPGKEMRERL 90 >gi|218131482|ref|ZP_03460286.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM 20697] gi|217986414|gb|EEC52751.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM 20697] Length = 88 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ RVG Sbjct: 1 MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVTERAGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++V F+A S L Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85 >gi|188996798|ref|YP_001931049.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931865|gb|ACD66495.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 92 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +++ G+++ + R V + + +GE + I F+VKQ+ +R G Sbjct: 1 MTKSELISKTAEKAGITKAAAERAVNAAIEAVVGALSKGERVAIPGLGVFNVKQRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I R+VV F A+ LK Sbjct: 61 RNPRTGKEITIPARKVVAFTAAKSLK 86 >gi|261493979|ref|ZP_05990487.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494737|ref|ZP_05991216.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309554|gb|EEY10778.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310411|gb|EEY11606.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ L++KD+ + + I S G+A+++ F TF V ++ +R G Sbjct: 1 MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +V F + LK Sbjct: 61 RNPKTGEEIKIAAAKVPAFVSGKALK 86 >gi|119470902|ref|ZP_01613486.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales bacterium TW-7] gi|119445924|gb|EAW27204.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales bacterium TW-7] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ +TR + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSALKEGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I + FKA LK ++ Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQV 89 >gi|17546433|ref|NP_519835.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000] gi|207723583|ref|YP_002253982.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2] gi|207743053|ref|YP_002259445.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609] gi|300691407|ref|YP_003752402.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum PSI07] gi|300703975|ref|YP_003745577.1| DNA-binding protein hu-beta, transcriptional regulator subunit beta [Ralstonia solanacearum CFBP2957] gi|17428731|emb|CAD15416.1| probable dna-binding protein hu-beta [Ralstonia solanacearum GMI1000] gi|206588785|emb|CAQ35748.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2] gi|206594450|emb|CAQ61377.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609] gi|299071638|emb|CBJ42962.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum CFBP2957] gi|299078467|emb|CBJ51119.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum PSI07] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L I D+ G ++ + F TF V Q+ +R G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI+ +V FK LK Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALK 86 >gi|91217978|ref|ZP_01254930.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755] gi|91183836|gb|EAS70227.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755] Length = 96 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS + GL + + V T +E+ +S G+ + + F +F VK + + G Sbjct: 1 MTKADIVANISDKLGLEKGEVQATVETFMDEVKNSLEGGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + I Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIF 85 >gi|227495757|ref|ZP_03926068.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434] gi|226834686|gb|EEH67069.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434] Length = 93 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++L+ +I+++ GL++ D+ F+ + ++ +GEA+KI+ ++ +R Sbjct: 2 SVNRTELIAAIAEKAGLTKTDADAFLGAFQEVLVENVAKGEAVKITGLMGVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E++I V S LKK + Sbjct: 62 GRNPRTGEEIQIPAGYGVKLTVGSALKKAV 91 >gi|301061082|ref|ZP_07201879.1| putative integration host factor subunit alpha [delta proteobacterium NaphS2] gi|300444876|gb|EFK08844.1| putative integration host factor subunit alpha [delta proteobacterium NaphS2] Length = 93 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +++ I K+ + + R +L + + GE I IS F F V++K +R Sbjct: 2 TLTKERIIERIWKDTDQKKAEIQRTFESLVEIMKQTLASGEDIMISGFGKFCVREKKARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + + +D R+VV FK S L++++ Sbjct: 62 GRNPQTGEAMDLDGRKVVTFKCSGKLREKL 91 >gi|254785728|ref|YP_003073157.1| DNA-binding protein HU-beta [Teredinibacter turnerae T7901] gi|239918950|gb|ACR13101.2| DNA-binding protein HU-beta [Teredinibacter turnerae T7901] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV++I+ +S+ + R + + I ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELVEAIAASADISKAAAGRALDAVTESIANALKEGDQVALVGFGTFLVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I ++ FKA LK + Sbjct: 61 RNPQTGDPIEIAAAKIPSFKAGKALKDAV 89 >gi|117924222|ref|YP_864839.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] gi|117607978|gb|ABK43433.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +L K ++ + G+S+ D+ R V I +S + + + F TF V ++ +R GRN Sbjct: 4 GELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 QT +++ I R + FKA L++++ Sbjct: 64 QTGEKINISASRTIRFKAGQSLREKV 89 >gi|317476442|ref|ZP_07935691.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316907468|gb|EFV29173.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 88 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ RVG Sbjct: 1 MNKSELISAMAAEAGLSKADSKRALDAFIASVTTALKAGDKVALVGFGTFSVTERAGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++V F+A S L Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85 >gi|83643450|ref|YP_431885.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] gi|83631493|gb|ABC27460.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 44/84 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+ LS+ + + L +EI D+ R E + + F TF + + +R G+N Sbjct: 3 KPELAAAIAARTNLSKSKAAEVLNALTDEIADAVSRNETVSLIGFGTFSQRNRSARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 +T +KI + V FKA +LK Sbjct: 63 PKTGAAIKIPASKTVGFKAGKLLK 86 >gi|260582305|ref|ZP_05850098.1| integration host factor, beta subunit [Haemophilus influenzae NT127] gi|260094673|gb|EEW78568.1| integration host factor, beta subunit [Haemophilus influenzae NT127] Length = 116 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 25 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E++I +V F + LK I Sbjct: 85 TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 115 >gi|307292720|ref|ZP_07572566.1| histone family protein DNA-binding protein [Sphingobium chlorophenolicum L-1] gi|306880786|gb|EFN12002.1| histone family protein DNA-binding protein [Sphingobium chlorophenolicum L-1] Length = 90 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++++ GLS+ D+++ V +F+ I + +G+ +++ F TF V Q+ + G Sbjct: 1 MNKQDLIGAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSV 89 >gi|296876928|ref|ZP_06900973.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912] gi|296432059|gb|EFH17861.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912] Length = 91 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 51/87 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E++I +V FKA LK+ + Sbjct: 64 PQTGKEIEIAASKVPAFKAGKALKEAV 90 >gi|260580507|ref|ZP_05848335.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] gi|260092849|gb|EEW76784.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] Length = 112 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 21 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 80 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E++I +V F + LK I Sbjct: 81 TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 111 >gi|145588688|ref|YP_001155285.1| integration host factor, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047094|gb|ABP33721.1| integration host factor, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 114 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + ITRS+LV+S++++F L +D V TL + + + G+ I++ +F + + Sbjct: 6 QQAITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTQALAEGKRIELRGVGSFVLHHRP 65 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN ++ ++V I +RV FK L++R+ Sbjct: 66 ARTGRNPKSGEKVLIPEKRVPHFKPGKELRERV 98 >gi|294012154|ref|YP_003545614.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S] gi|292675484|dbj|BAI97002.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++++ GLS+ D+++ V +F+ I + +G+ +++ F TF V Q+ + G Sbjct: 1 MNKQDLISAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSV 89 >gi|257469846|ref|ZP_05633938.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317064075|ref|ZP_07928560.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|313689751|gb|EFS26586.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V+ +K G ++K++ R V + D+ V+G+ I + + VK++ +R Sbjct: 1 MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDDITFVGWGKWEVKERAAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QTN++++I+ ++ V FK L ++ Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKV 89 >gi|253584037|ref|ZP_04861235.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] gi|251834609|gb|EES63172.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D K++ K +S+ +S R V + EI + GE + + F V QK R+ Sbjct: 1 MTKKDFAKALFEKGIFVSKAESERKVEAILTEIEEVLKSGEELNFIGWGKFEVVQKAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI+ ++ V FKA L +I Sbjct: 61 GRNPKTGEEIKIEAKKSVKFKAGKTLVDKI 90 >gi|83814878|ref|YP_445501.1| DNA-binding protein HU [Salinibacter ruber DSM 13855] gi|83756272|gb|ABC44385.1| DNA-binding protein HU [Salinibacter ruber DSM 13855] Length = 100 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL+ I+ GL++ ++ V + + G I++ F F V+ + R Sbjct: 2 SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QTN+ V+I+ R VF+ S L + + Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91 >gi|320534610|ref|ZP_08035057.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str. F0337] gi|325068381|ref|ZP_08127054.1| histone family protein DNA-binding protein [Actinomyces oris K20] gi|326773734|ref|ZP_08233017.1| DNA-binding protein HU [Actinomyces viscosus C505] gi|329947427|ref|ZP_08294631.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str. F0386] gi|320133176|gb|EFW25677.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str. F0337] gi|326636964|gb|EGE37867.1| DNA-binding protein HU [Actinomyces viscosus C505] gi|328525177|gb|EGF52228.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str. F0386] Length = 93 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++L+ +I+++ GL++ D+ F+ + + ++ +GEA+KI+ ++ +R Sbjct: 2 SVNRTELIAAIAEKAGLTKTDADAFLGAFQDVLVENVAKGEAVKITGLMGIERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E++I V S LKK + + Sbjct: 62 GRNPRTGEEIQIPAGYGVKVTVGSSLKKAVAE 93 >gi|223986260|ref|ZP_03636274.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM 12042] gi|223961755|gb|EEF66253.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM 12042] Length = 94 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 49/93 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + LV ++ + G+++K + V +F+EI + G + IS F F VK + Sbjct: 1 MSELLNKKALVDIVANQMGMTKKAAGETVDLIFDEITSTLKDGGKVDISGFGKFEVKTRA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R G N T +++ + +V FKA+ LK + Sbjct: 61 ERTGINPATKEKITVPATKVPGFKAAKALKDAV 93 >gi|149186802|ref|ZP_01865112.1| histone-like protein [Erythrobacter sp. SD-21] gi|148829469|gb|EDL47910.1| histone-like protein [Erythrobacter sp. SD-21] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ GLS+ D++ V +F+ I S +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLIGAVAEASGLSKSDASSAVEGVFDAITKSLSKGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMNIPASNQPKFKAGKGLKDAV 89 >gi|146299294|ref|YP_001193885.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] gi|146153712|gb|ABQ04566.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] Length = 96 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ GL + D V T E+ S G+ + + F +F VK + + G Sbjct: 1 MTKADIVAKISEKLGLEKGDVQATVETFMEEVKTSLETGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|94312469|ref|YP_585679.1| HU family DNA-binding protein [Cupriavidus metallidurans CH34] gi|93356321|gb|ABF10410.1| histone-like DNA-binding protein (HU) [Cupriavidus metallidurans CH34] Length = 92 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I D+ +GE + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLGAIMDAVAKGETLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+K++ + V FKA K Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFK 87 >gi|115522479|ref|YP_779390.1| integration host factor subunit beta [Rhodopseudomonas palustris BisA53] gi|122297854|sp|Q07UH4|IHFB_RHOP5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|115516426|gb|ABJ04410.1| integration host factor, beta subunit [Rhodopseudomonas palustris BisA53] Length = 102 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK +++R+ D Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD 93 >gi|332520146|ref|ZP_08396610.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] gi|332044705|gb|EGI80899.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] Length = 96 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV IS++ G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADLVAKISEKLGIEKGDVQATVETFMEEVKTSLEAGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 RN+ N +KI + FK + + + G K N D Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF-------VEGVKTNVD 94 >gi|330721962|gb|EGG99900.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC2047] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ E +S+ + R + + + + +G + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAAEADISKASAGRALDAAVDAVTNELKKGGQVSLVGFGTFSVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + ++I ++ FKA LK Sbjct: 61 RNPQTGETIQIKAAKIPSFKAGKALK 86 >gi|86157913|ref|YP_464698.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197122784|ref|YP_002134735.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|220917567|ref|YP_002492871.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85774424|gb|ABC81261.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|196172633|gb|ACG73606.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|219955421|gb|ACL65805.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL++ + LS++ V ++F + + + + F TF VK++ RV Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E++I P + V FK + LKK + Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >gi|225420306|ref|ZP_03762609.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme DSM 15981] gi|225041123|gb|EEG51369.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme DSM 15981] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V+GE +++ F F V + +RV Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVTEELVKGEKVQLVGFGNFEVSARAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + ++ + FKA LK Sbjct: 61 RNPKTGEPMNVEASKTPKFKAGKALK 86 >gi|90407137|ref|ZP_01215325.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3] gi|90311713|gb|EAS39810.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I+++ L++ + V + I DS GE +++ F TF V + +R+G Sbjct: 1 MNKTQLVAQIAEKSELTKVQAKAAVEQILASITDSLKDGEPVQLIGFGTFKVNHRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++++I V F A LK+ + Sbjct: 61 RNPQTGEDIQIKAANVPAFVAGKALKESV 89 >gi|295094507|emb|CBK83598.1| Bacterial nucleoid DNA-binding protein [Coprococcus sp. ART55/1] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KD+ + + + D +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEKTELSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + FKA LK I Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSI 89 >gi|289549079|ref|YP_003474067.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] gi|289182696|gb|ADC89940.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 53/87 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +I+K G+++K++ + + D+ +GE + I F F V+Q+ +R G Sbjct: 1 MTKAELVSAIAKGAGITKKEADAALKAAVAAVADALKKGERVAIPGFGIFTVRQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T + I R+VVVF+ + L++ Sbjct: 61 RNPRTGAVINIPARKVVVFRPAKDLRE 87 >gi|260773191|ref|ZP_05882107.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14] gi|260612330|gb|EEX37533.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADISKASAGRALDAFIEAVTDTLQSGDQVALVGFGTFSVRSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86 >gi|260596812|ref|YP_003209383.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032] gi|260215989|emb|CBA28644.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032] Length = 113 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + + +S G+ + + F TF V+++ +R G Sbjct: 24 VNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFAVRERAARTG 83 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V F+A LK Sbjct: 84 RNPQTGKEITIAAAKVPGFRAGKALK 109 >gi|323498279|ref|ZP_08103281.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326] gi|323316707|gb|EGA69716.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + L + ++ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDALIEAVGETLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86 >gi|307706517|ref|ZP_07643324.1| DNA-binding protein HU [Streptococcus mitis SK321] gi|322376730|ref|ZP_08051223.1| DNA-binding protein HU [Streptococcus sp. M334] gi|307617972|gb|EFN97132.1| DNA-binding protein HU [Streptococcus mitis SK321] gi|321282537|gb|EFX59544.1| DNA-binding protein HU [Streptococcus sp. M334] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87 >gi|291326896|ref|ZP_06126254.2| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131] gi|291312425|gb|EFE52878.1| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131] Length = 96 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + +S+ + R V + S +G+ + + F TF V+++ +R G Sbjct: 6 VNKAQLIDQIASDANISKAAAGRVVDAFVATVTGSLSKGDDVALVGFGTFSVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+ LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAV 94 >gi|78187799|ref|YP_375842.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273] gi|78167701|gb|ABB24799.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + L++ D+ R V N + S G+ + + F TF + +R G Sbjct: 1 MSKAELVEKIAAQAKLTKVDAERAVNAFINVVTSSLKGGDDVTLVGFGTFTTGDRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK + Sbjct: 61 RNPQTGKAITIPAKKVVKFKPGKALKDEV 89 >gi|332534858|ref|ZP_08410681.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis ANT/505] gi|332035718|gb|EGI72206.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis ANT/505] Length = 89 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ L++KDS +++L I S G+ ++I+ F TF + +R G Sbjct: 1 MNKAELVAAIAQKSELTKKDSQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT ++I+ VFK + LK Sbjct: 61 RNPQTGAAIEIEGANKAVFKPAKALK 86 >gi|294507387|ref|YP_003571445.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8] gi|294343715|emb|CBH24493.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8] Length = 100 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL+ I+ GL++ ++ V + + G I++ F F V+ + R Sbjct: 2 SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QTN+ V+I+ R VF+ S L + + Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91 >gi|120435797|ref|YP_861483.1| histone-like DNA-binding protein [Gramella forsetii KT0803] gi|117577947|emb|CAL66416.1| histone-like bacterial DNA-binding protein [Gramella forsetii KT0803] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ G+S+ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTDLIDAMAENAGISKAAAKKALESFLENVEKSLKKGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA + L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAV 89 >gi|148263534|ref|YP_001230240.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146397034|gb|ABQ25667.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] Length = 93 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV + + G LSRK+S ++ +F+ +C++ GE ++I F +F ++ + +R Sbjct: 1 MTKSELVDKLVEVNGILSRKESEAIISIVFDSMCEALKSGEKVEIRGFGSFTIRDREARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + VKI ++ FK L++R+ Sbjct: 61 ARNPKSGEIVKIASKKTPFFKTGKELRERV 90 >gi|94707|pir||S12888 DNA-binding protein II - Thermus aquaticus gi|227284|prf||1701290A DNA binding protein II Length = 95 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 49/91 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL D V L ++ ++ G ++++ F TF V+++ +R Sbjct: 4 KTVTKADLVDQVAQATGLKLLDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK ++ Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKV 94 >gi|156935007|ref|YP_001438923.1| transcriptional regulator HU subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156533261|gb|ABU78087.1| hypothetical protein ESA_02858 [Cronobacter sakazakii ATCC BAA-894] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89 >gi|117617689|ref|YP_858134.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145300512|ref|YP_001143353.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp. salmonicida A449] gi|7288222|gb|AAF45030.1|AF146598_1 putative DNA-binding protein HU [Aeromonas hydrophila] gi|42768703|gb|AAS45567.1| putative DNA-binding protein HU [Aeromonas hydrophila] gi|117559096|gb|ABK36044.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|142853284|gb|ABO91605.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp. salmonicida A449] Length = 98 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +I+ + LS+ + + + N I S G+A+++ F TF V + R G Sbjct: 9 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 68 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I V F A LK + Sbjct: 69 RNPQTGKEIQIAAANVPSFVAGKALKDAV 97 >gi|315123478|ref|YP_004065484.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp. SM9913] gi|315017238|gb|ADT70575.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp. SM9913] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ IS + +S+ +TR + + S G ++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKISTDAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I + FK LK ++ Sbjct: 61 RNPQTGAEIQISAATIPSFKPGKGLKDQV 89 >gi|307822661|ref|ZP_07652892.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] gi|307736265|gb|EFO07111.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I++ L++ D+ R + + + G+++ + F T+ VK++ R G Sbjct: 1 MNKSELIDAIAESAELTKADAGRALDGFIGAVTKALSSGDSVALVGFGTYAVKERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I ++ FKA LK + Sbjct: 61 RNPQTGAEITIKAAKIPSFKAGKSLKDAV 89 >gi|251790645|ref|YP_003005366.1| transcriptional regulator HU subunit beta [Dickeya zeae Ech1591] gi|271499600|ref|YP_003332625.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|307129930|ref|YP_003881946.1| HU, DNA-binding transcriptional regulator, subunit beta [Dickeya dadantii 3937] gi|247539266|gb|ACT07887.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591] gi|270343155|gb|ACZ75920.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|306527459|gb|ADM97389.1| HU, DNA-binding transcriptional regulator, beta subunit [Dickeya dadantii 3937] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDSV 89 >gi|254252926|ref|ZP_04946244.1| Integration host factor [Burkholderia dolosa AUO158] gi|124895535|gb|EAY69415.1| Integration host factor [Burkholderia dolosa AUO158] Length = 107 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V++ + V FK L++R+ Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV 90 >gi|121997363|ref|YP_001002150.1| integration host factor subunit beta [Halorhodospira halophila SL1] gi|166918550|sp|A1WUI6|IHFB_HALHL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|121588768|gb|ABM61348.1| integration host factor, beta subunit [Halorhodospira halophila SL1] Length = 102 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I SK+ L+ KD V + + ++ G+ I+I F +F + + +R+ Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERV 90 >gi|315419723|gb|ADU15831.1| histone-like protein [Streptococcus mitis] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87 >gi|261415071|ref|YP_003248754.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371527|gb|ACX74272.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326666|gb|ADL25867.1| DNA-binding protein HU [Fibrobacter succinogenes subsp. succinogenes S85] Length = 124 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 IT+ L++ I+K G R D V + + + + G I+I F TF K + +R Sbjct: 4 ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V ID R V FK S+ +K +I Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKI 92 >gi|163814658|ref|ZP_02206047.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC 27759] gi|158450293|gb|EDP27288.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC 27759] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KD+ + + + D +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEKTKLSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + FKA LK I Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSI 89 >gi|308273400|emb|CBX30002.1| Integration host factor subunit alpha [uncultured Desulfobacterium sp.] Length = 94 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V + E G ++K S + +L I ++ G+ + IS F F VK+K R Sbjct: 2 ALTKNDIVARVH-ELGFTKKKSVDIIESLLMIIKNNLENGDDVLISGFGKFCVKKKSQRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T ++ + RRVV FK S L+ +I Sbjct: 61 GRNPATGSDLILRQRRVVTFKCSGKLRDKI 90 >gi|302344119|ref|YP_003808648.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301640732|gb|ADK86054.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 92 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+++++K L+ K + V TLF I ++ V+G+ ++I F +F VK G Sbjct: 1 MNKSQLIEALAKAENLTIKKAEMVVNTLFGAIEEALVQGDRVEIRGFGSFKVKNYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ +++ FK LK R+ Sbjct: 61 RNPKTGEIIQVGQKKLPFFKVGKELKDRV 89 >gi|283796888|ref|ZP_06346041.1| DNA-binding protein HU [Clostridium sp. M62/1] gi|291075298|gb|EFE12662.1| DNA-binding protein HU [Clostridium sp. M62/1] gi|295089874|emb|CBK75981.1| Bacterial nucleoid DNA-binding protein [Clostridium cf. saccharolyticum K10] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + + + + + V+G I++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAIKAFTDTVSEELVKGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + FKA LK Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALK 86 >gi|167763758|ref|ZP_02435885.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC 43183] gi|167697874|gb|EDS14453.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC 43183] Length = 88 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ R+G Sbjct: 1 MNKSELISAMAAEGGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I+ ++V FK S L Sbjct: 61 INPATKKPIQIEAKKVAKFKPGSEL 85 >gi|150005790|ref|YP_001300534.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|254882028|ref|ZP_05254738.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|294776169|ref|ZP_06741658.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|319640964|ref|ZP_07995672.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] gi|149934214|gb|ABR40912.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|254834821|gb|EET15130.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|294449992|gb|EFG18503.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|317387409|gb|EFV68280.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + +S++ G + KD+++ V+++ + G I I F TF VK+K R+ N Sbjct: 5 EFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERISINPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 T Q + I P+ V+ +K S LK++ Sbjct: 65 TQQRMLIPPKLVLTYKPSVTLKEK 88 >gi|253987885|ref|YP_003039241.1| DNA binding protein hu-alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779335|emb|CAQ82496.1| dna-binding protein hu-alpha (ns2) (hu-2) [Photorhabdus asymbiotica] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I +S G+++++ F TF V + R G Sbjct: 1 MNKTELVDAIAESTDLTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I V F A LK + Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAV 89 >gi|251771308|gb|EES51889.1| putative integration host factor, alpha subunit HimA like protein [Leptospirillum ferrodiazotrophum] Length = 104 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 5 ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + R+D+V+ GL RK + + EI +S + GE++K++ F TF V+++ Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86 R+GRN +T + + I +VVVF+ + Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPT 85 >gi|71737446|ref|YP_277186.1| HU family DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485720|ref|ZP_05639761.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298489413|ref|ZP_07007424.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557999|gb|AAZ37210.1| DNA-binding protein HU family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155987|gb|EFH97096.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321727|gb|EFW77825.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331477|gb|EFW87417.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880920|gb|EGH15069.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330890628|gb|EGH23289.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330986904|gb|EGH85007.1| HU family DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012004|gb|EGH92060.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + ++ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|226946851|ref|YP_002801924.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226721778|gb|ACO80949.1| histone-like bacterial DNA-binding protein [Azotobacter vinelandii DJ] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+R + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKTDLTRDQANRVLNAMLEEITSALNRKDSVTLVGFGTFVQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK L+ Sbjct: 63 PQTGQPVKIRASNTVAFKPGKSLR 86 >gi|152983749|ref|YP_001351441.1| putative DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150958907|gb|ABR80932.1| probable DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + L +EI + R +++ + F TF + +G+ G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGASTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK L+ Sbjct: 63 PQTGQPVKIKASNTVAFKPGKALR 86 >gi|325954785|ref|YP_004238445.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] gi|323437403|gb|ADX67867.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] Length = 97 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 44/82 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS + GL + D+ R + +E+ S GE + + F +F +K++ + G Sbjct: 1 MTKADIVNNISSKLGLEKGDTQRVIEAFMDEVIKSLENGENVYLRGFGSFTIKKRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ + I V FK + Sbjct: 61 RNITKGTSIIIPAHNVPGFKPA 82 >gi|163753443|ref|ZP_02160567.1| DNA-binding protein HU [Kordia algicida OT-1] gi|161327175|gb|EDP98500.1| DNA-binding protein HU [Kordia algicida OT-1] Length = 96 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V T E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGMEKGDVQATVETFMEEVKNSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|163783706|ref|ZP_02178693.1| integration host factor beta subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881031|gb|EDP74548.1| integration host factor beta subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 94 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SD+ K I+K G+S++ + V +F + ++ RGE ++I TF +K+K SR Sbjct: 1 MKKSDITKEIAKRRGISQRKARIIVDQIFQAMAEALTRGEKVEIRGLGTFKIKKKPSRFV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 ++ +T E+ + R V FK ++K Sbjct: 61 KDPRTGVEIFVKERYVPTFKMGKLIK 86 >gi|221067986|ref|ZP_03544091.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|221068049|ref|ZP_03544154.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|220713009|gb|EED68377.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|220713072|gb|EED68440.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL++ ISK +S++ + R ++ + I + +G+ ++I F TF V ++ R G Sbjct: 1 MNKSDLIEHISKSAEVSKQAADRALSATLDGIRQALKKGKVVQIIGFGTFSVGRRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T ++V I RV FK LK Sbjct: 61 RNPRTGEKVTIAATRVAKFKPGKHLK 86 >gi|218886655|ref|YP_002435976.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757609|gb|ACL08508.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 97 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 53/95 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++++V +I ++ +R + V +L + + + A+ IS F F K + Sbjct: 3 GKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QT++ + + PR+VVVF+ S + + D+ Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLSRKFRAELNDE 97 >gi|320104532|ref|YP_004180123.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC 43644] gi|319751814|gb|ADV63574.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC 43644] Length = 126 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 6/103 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ D+VK IS E GL++ + + V + I + V+ I++ +F F VK++ +R Sbjct: 1 MTKKDIVKRISDEVGLTQLKTKQIVQLTLDAIIQTLVQEGQIELRNFGVFKVKRRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN +T +V + + VV FK + M+D+ R N DD+ Sbjct: 61 RNPRTGAKVTVPAKTVVTFKPG-----KEMEDL-VRSMNPDDL 97 >gi|62464771|ref|YP_220382.1| hypothetical protein p49879_1p05 [Leptospirillum ferrooxidans] gi|60739072|gb|AAX36038.1| ORF98 [Leptospirillum ferrooxidans] Length = 98 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+S+S LS+KD + I DS +GE + + F TF +K +R G Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I R V F A L++ I Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89 >gi|325578218|ref|ZP_08148353.1| integration host factor beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|301156124|emb|CBW15595.1| integration host factor (IHF), DNA-binding protein, beta subunit [Haemophilus parainfluenzae T3T1] gi|325159954|gb|EGC72083.1| integration host factor beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 94 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++++S K LS K+ V + I S G I++ F +F + + RV Sbjct: 1 MTKSELIENLSTKHPTLSAKEVEGIVKDILELIAQSLEEGNRIEVRGFGSFSLHHRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T VK+D + V FKA LK R+ Sbjct: 61 GRNPKTGDSVKLDAKSVPHFKAGKELKDRV 90 >gi|300715594|ref|YP_003740397.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661] gi|299061430|emb|CAX58542.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661] Length = 90 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + DS G+ + + F TF V+++ R G Sbjct: 1 MNKSQLIDKIAASADISKAAAGRVLDAFMGSVSDSLKEGDEVALVGFGTFSVRERSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIPAGKVPGFRAGKALKDAV 89 >gi|228961970|ref|ZP_04123500.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797708|gb|EEM44791.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + GL + ++ V TL I + G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELITQVAVKTGLKKSQASLAVDTLLESIQQALQNGDNVQLLGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + I ++ FKA +LK+ + Sbjct: 61 RNPSTGESLVIPAKKAPAFKAGKVLKEAV 89 >gi|70733385|ref|YP_263160.1| integration host factor subunit beta [Pseudomonas fluorescens Pf-5] gi|68347684|gb|AAY95290.1| integration host factor, beta subunit, putative [Pseudomonas fluorescens Pf-5] Length = 91 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86 >gi|289677399|ref|ZP_06498289.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae FF5] gi|302187085|ref|ZP_07263758.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae 642] gi|330898762|gb|EGH30181.1| histone-like DNA-binding protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937458|gb|EGH41423.1| histone-like DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952450|gb|EGH52710.1| histone-like DNA-binding protein [Pseudomonas syringae Cit 7] gi|330976274|gb|EGH76336.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 91 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + ++ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPEVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|113869620|ref|YP_728109.1| HU family DNA-binding protein [Ralstonia eutropha H16] gi|113528396|emb|CAJ94741.1| DNA-binding protein HU family [Ralstonia eutropha H16] Length = 92 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + + I D+ +GE + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKSKAEQALNVTLSAIMDAVAKGETLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|114330422|ref|YP_746644.1| integration host factor, beta subunit [Nitrosomonas eutropha C91] gi|122314557|sp|Q0AIZ2|IHFB_NITEC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114307436|gb|ABI58679.1| integration host factor, beta subunit [Nitrosomonas eutropha C91] Length = 105 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + S RGE I+I F +F + + SRV Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA +++ I Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90 >gi|167586533|ref|ZP_02378921.1| integration host factor, beta subunit [Burkholderia ubonensis Bu] Length = 107 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V++ + V FK L++R+ Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV 90 >gi|152968975|ref|YP_001334084.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578345|ref|YP_002240080.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342] gi|238893389|ref|YP_002918123.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|261341041|ref|ZP_05968899.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|262042476|ref|ZP_06015635.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936831|ref|YP_003440890.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|290510113|ref|ZP_06549483.1| transcriptional regulator HU subunit alpha [Klebsiella sp. 1_1_55] gi|296101562|ref|YP_003611708.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|311280663|ref|YP_003942894.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|330011536|ref|ZP_08307122.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3] gi|150953824|gb|ABR75854.1| DNA-binding protein HU-beta, NS1 (HU-1) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567403|gb|ACI09179.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342] gi|238545705|dbj|BAH62056.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040180|gb|EEW41292.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288316906|gb|EFC55844.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|288891540|gb|ADC59858.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|289776829|gb|EFD84827.1| transcriptional regulator HU subunit alpha [Klebsiella sp. 1_1_55] gi|295056021|gb|ADF60759.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|308749858|gb|ADO49610.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|328534153|gb|EGF60788.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3] Length = 90 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89 >gi|27363508|ref|NP_759036.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6] gi|37679291|ref|NP_933900.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016] gi|27359624|gb|AAO08563.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6] gi|37198034|dbj|BAC93871.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016] Length = 97 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ ++ LV+SI+ +S+ + R + + + G+ + + F TF V+ + +R Sbjct: 7 TVNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E++I +V FKA LK Sbjct: 67 GRNPKTGEEIQIAEAKVPSFKAGKALK 93 >gi|159903915|ref|YP_001551259.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9211] gi|159889091|gb|ABX09305.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9211] Length = 92 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + + I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVALVIDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRV 89 >gi|225012358|ref|ZP_03702794.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] gi|225003335|gb|EEG41309.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] Length = 97 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS + G+ R D V E+ S +GE + + F +F +K + + G Sbjct: 1 MTKADIVSNISDQLGIDRADVQATVEKFMKEVKGSLEKGENVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N +KI + FK + I K + Sbjct: 61 RNISKNIALKIPAHNIPSFKPAKIFVKGV 89 >gi|161525426|ref|YP_001580438.1| integration host factor subunit beta [Burkholderia multivorans ATCC 17616] gi|189349837|ref|YP_001945465.1| integration host factor subunit beta [Burkholderia multivorans ATCC 17616] gi|221201262|ref|ZP_03574302.1| integration host factor, beta subunit [Burkholderia multivorans CGD2M] gi|221206284|ref|ZP_03579297.1| integration host factor, beta subunit [Burkholderia multivorans CGD2] gi|221213565|ref|ZP_03586539.1| integration host factor, beta subunit [Burkholderia multivorans CGD1] gi|226709776|sp|A9ADV3|IHFB_BURM1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|160342855|gb|ABX15941.1| integration host factor, beta subunit [Burkholderia multivorans ATCC 17616] gi|189333859|dbj|BAG42929.1| integration host factor beta subunit [Burkholderia multivorans ATCC 17616] gi|221166354|gb|EED98826.1| integration host factor, beta subunit [Burkholderia multivorans CGD1] gi|221173593|gb|EEE06027.1| integration host factor, beta subunit [Burkholderia multivorans CGD2] gi|221179112|gb|EEE11519.1| integration host factor, beta subunit [Burkholderia multivorans CGD2M] Length = 107 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V++ + V FK L++R+ Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV 90 >gi|15603597|ref|NP_246671.1| hypothetical protein PM1732 [Pasteurella multocida subsp. multocida str. Pm70] gi|14194596|sp|Q9CK94|DBH_PASMU RecName: Full=DNA-binding protein HU gi|12722146|gb|AAK03816.1| HupA [Pasteurella multocida subsp. multocida str. Pm70] Length = 90 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S GE +++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEPVQLIGFGTFKVNSRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+KI +V F A LK Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALK 86 >gi|229496747|ref|ZP_04390458.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC 35406] gi|229316293|gb|EEN82215.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC 35406] Length = 88 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 51/85 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ GL++ D+ R V + ++ +G+ + + F TF V Q+ +R G Sbjct: 1 MNKTEFIAAVAEKAGLTKADAQRAVNAFTEVVKETMEKGDRLPLVGFGTFSVSQRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 +N +T + +KI R+VV FK + L Sbjct: 61 KNPRTGETIKIAARKVVHFKPGANL 85 >gi|50843144|ref|YP_056371.1| DNA-binding protein HU [Propionibacterium acnes KPA171202] gi|282855020|ref|ZP_06264352.1| DNA-binding protein HU [Propionibacterium acnes J139] gi|289425014|ref|ZP_06426793.1| DNA-binding protein HU [Propionibacterium acnes SK187] gi|289427803|ref|ZP_06429512.1| DNA-binding protein HU [Propionibacterium acnes J165] gi|295131204|ref|YP_003581867.1| DNA-binding protein HU [Propionibacterium acnes SK137] gi|50840746|gb|AAT83413.1| DNA-binding protein HU [Propionibacterium acnes KPA171202] gi|282581608|gb|EFB86993.1| DNA-binding protein HU [Propionibacterium acnes J139] gi|289154713|gb|EFD03399.1| DNA-binding protein HU [Propionibacterium acnes SK187] gi|289158985|gb|EFD07180.1| DNA-binding protein HU [Propionibacterium acnes J165] gi|291377085|gb|ADE00940.1| DNA-binding protein HU [Propionibacterium acnes SK137] gi|313763392|gb|EFS34756.1| DNA-binding protein HU [Propionibacterium acnes HL013PA1] gi|313773269|gb|EFS39235.1| DNA-binding protein HU [Propionibacterium acnes HL074PA1] gi|313793448|gb|EFS41499.1| DNA-binding protein HU [Propionibacterium acnes HL110PA1] gi|313801153|gb|EFS42416.1| DNA-binding protein HU [Propionibacterium acnes HL110PA2] gi|313808502|gb|EFS46967.1| DNA-binding protein HU [Propionibacterium acnes HL087PA2] gi|313812075|gb|EFS49789.1| DNA-binding protein HU [Propionibacterium acnes HL083PA1] gi|313812345|gb|EFS50059.1| DNA-binding protein HU [Propionibacterium acnes HL025PA1] gi|313814684|gb|EFS52398.1| DNA-binding protein HU [Propionibacterium acnes HL059PA1] gi|313819237|gb|EFS56951.1| DNA-binding protein HU [Propionibacterium acnes HL046PA2] gi|313821091|gb|EFS58805.1| DNA-binding protein HU [Propionibacterium acnes HL036PA1] gi|313823483|gb|EFS61197.1| DNA-binding protein HU [Propionibacterium acnes HL036PA2] gi|313827014|gb|EFS64728.1| DNA-binding protein HU [Propionibacterium acnes HL063PA1] gi|313834714|gb|EFS72428.1| DNA-binding protein HU [Propionibacterium acnes HL056PA1] gi|313837917|gb|EFS75631.1| DNA-binding protein HU [Propionibacterium acnes HL086PA1] gi|314917598|gb|EFS81429.1| DNA-binding protein HU [Propionibacterium acnes HL050PA1] gi|314919646|gb|EFS83477.1| DNA-binding protein HU [Propionibacterium acnes HL050PA3] gi|314924276|gb|EFS88107.1| DNA-binding protein HU [Propionibacterium acnes HL001PA1] gi|314925924|gb|EFS89755.1| DNA-binding protein HU [Propionibacterium acnes HL036PA3] gi|314930281|gb|EFS94112.1| DNA-binding protein HU [Propionibacterium acnes HL067PA1] gi|314956860|gb|EFT01014.1| DNA-binding protein HU [Propionibacterium acnes HL027PA1] gi|314957637|gb|EFT01740.1| DNA-binding protein HU [Propionibacterium acnes HL002PA1] gi|314960899|gb|EFT05000.1| DNA-binding protein HU [Propionibacterium acnes HL002PA2] gi|314963337|gb|EFT07437.1| DNA-binding protein HU [Propionibacterium acnes HL082PA1] gi|314967386|gb|EFT11485.1| DNA-binding protein HU [Propionibacterium acnes HL082PA2] gi|314968980|gb|EFT13078.1| DNA-binding protein HU [Propionibacterium acnes HL037PA1] gi|314974014|gb|EFT18110.1| DNA-binding protein HU [Propionibacterium acnes HL053PA1] gi|314975440|gb|EFT19535.1| DNA-binding protein HU [Propionibacterium acnes HL045PA1] gi|314979461|gb|EFT23555.1| DNA-binding protein HU [Propionibacterium acnes HL072PA2] gi|314982105|gb|EFT26198.1| DNA-binding protein HU [Propionibacterium acnes HL110PA3] gi|314984200|gb|EFT28292.1| DNA-binding protein HU [Propionibacterium acnes HL005PA1] gi|314988445|gb|EFT32536.1| DNA-binding protein HU [Propionibacterium acnes HL005PA2] gi|314988636|gb|EFT32727.1| DNA-binding protein HU [Propionibacterium acnes HL005PA3] gi|315079383|gb|EFT51381.1| DNA-binding protein HU [Propionibacterium acnes HL053PA2] gi|315080039|gb|EFT52015.1| DNA-binding protein HU [Propionibacterium acnes HL078PA1] gi|315083409|gb|EFT55385.1| DNA-binding protein HU [Propionibacterium acnes HL027PA2] gi|315086796|gb|EFT58772.1| DNA-binding protein HU [Propionibacterium acnes HL002PA3] gi|315089443|gb|EFT61419.1| DNA-binding protein HU [Propionibacterium acnes HL072PA1] gi|315090344|gb|EFT62320.1| DNA-binding protein HU [Propionibacterium acnes HL110PA4] gi|315093627|gb|EFT65603.1| DNA-binding protein HU [Propionibacterium acnes HL060PA1] gi|315097786|gb|EFT69762.1| DNA-binding protein HU [Propionibacterium acnes HL038PA1] gi|315098017|gb|EFT69993.1| DNA-binding protein HU [Propionibacterium acnes HL059PA2] gi|315102637|gb|EFT74613.1| DNA-binding protein HU [Propionibacterium acnes HL046PA1] gi|315104472|gb|EFT76448.1| DNA-binding protein HU [Propionibacterium acnes HL050PA2] gi|315106215|gb|EFT78191.1| DNA-binding protein HU [Propionibacterium acnes HL030PA1] gi|315110452|gb|EFT82428.1| DNA-binding protein HU [Propionibacterium acnes HL030PA2] gi|327325389|gb|EGE67194.1| DNA-binding protein HU [Propionibacterium acnes HL096PA2] gi|327325467|gb|EGE67271.1| DNA-binding protein HU [Propionibacterium acnes HL103PA1] gi|327328272|gb|EGE70036.1| DNA-binding protein HU [Propionibacterium acnes HL096PA3] gi|327332409|gb|EGE74145.1| DNA-binding protein HU [Propionibacterium acnes HL097PA1] gi|327443682|gb|EGE90336.1| DNA-binding protein HU [Propionibacterium acnes HL043PA1] gi|327449219|gb|EGE95873.1| DNA-binding protein HU [Propionibacterium acnes HL043PA2] gi|327450187|gb|EGE96841.1| DNA-binding protein HU [Propionibacterium acnes HL013PA2] gi|327451216|gb|EGE97870.1| DNA-binding protein HU [Propionibacterium acnes HL087PA3] gi|327451251|gb|EGE97905.1| DNA-binding protein HU [Propionibacterium acnes HL092PA1] gi|327452573|gb|EGE99227.1| DNA-binding protein HU [Propionibacterium acnes HL083PA2] gi|328751969|gb|EGF65585.1| DNA-binding protein HU [Propionibacterium acnes HL025PA2] gi|328754787|gb|EGF68403.1| DNA-binding protein HU [Propionibacterium acnes HL087PA1] gi|328756757|gb|EGF70373.1| DNA-binding protein HU [Propionibacterium acnes HL020PA1] gi|328761031|gb|EGF74583.1| DNA-binding protein HU [Propionibacterium acnes HL099PA1] gi|332676081|gb|AEE72897.1| DNA-binding protein HU [Propionibacterium acnes 266] Length = 91 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L + I + +GE +++ T ++ +R G Sbjct: 1 MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|89073233|ref|ZP_01159763.1| putative bacterial nucleoid DNA-binding protein [Photobacterium sp. SKA34] gi|90579275|ref|ZP_01235085.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum S14] gi|89050943|gb|EAR56407.1| putative bacterial nucleoid DNA-binding protein [Photobacterium sp. SKA34] gi|90440108|gb|EAS65289.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum S14] Length = 90 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + D+ GE + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAESADISKASAGRALDAFIEAVSDTLKDGEQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSV 89 >gi|289628106|ref|ZP_06461060.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651294|ref|ZP_06482637.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330870971|gb|EGH05680.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 92 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + ++ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|38637989|ref|NP_942963.1| putative histone-like protein [Ralstonia eutropha H16] gi|32527327|gb|AAP86077.1| putative histone-like protein [Ralstonia eutropha H16] Length = 114 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 3 KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T+++L+++I+ GL++ + + + I D+ +G+A+ + F TF ++ Sbjct: 20 RIMTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAE 79 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86 R+ RN +T +E+K++ R V FKA Sbjct: 80 RMARNPRTGEEIKVEAARTVKFKAG 104 >gi|237653695|ref|YP_002890009.1| integration host factor subunit beta [Thauera sp. MZ1T] gi|237624942|gb|ACR01632.1| integration host factor, beta subunit [Thauera sp. MZ1T] Length = 95 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ RG+ I+I F +F + + R Sbjct: 1 MTKSELIAQLAERFPQLVAKDADYAVKMILDAMTDALARGDRIEIRGFGSFALNYRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA L++R+ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKAGKELRERV 90 >gi|90419402|ref|ZP_01227312.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336339|gb|EAS50080.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 92 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++S++ LS++D++ V +F + + +G+ I++ F TF V + + G Sbjct: 1 MNKNELIAAVSEKAELSKQDASSAVDAVFETLQATMAKGDDIRLVGFGTFSVSHRAASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFAAGKGLKDAV 89 >gi|317492906|ref|ZP_07951330.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919028|gb|EFV40363.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I++ +S+ + R + + + +S G+++ + F TF V+++ +R G Sbjct: 1 MNKSQLVDKIAEGADISKAAAGRALDAIIASVTESLQSGDSVALVGFGTFDVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAV 89 >gi|302878720|ref|YP_003847284.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302581509|gb|ADL55520.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 93 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G ++ D+ R + + ++ G+ I + F +F V+++ +R G Sbjct: 1 MNRKELIDALATKTGSTKADAARNFAAFIDVVTETLTAGDDISLVGFGSFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+KI + FK + LK + D Sbjct: 61 RNPATGAELKIAASKSPAFKPGATLKSAVND 91 >gi|255065928|ref|ZP_05317783.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256] gi|261364607|ref|ZP_05977490.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996] gi|261378756|ref|ZP_05983329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685] gi|255049839|gb|EET45303.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256] gi|269144911|gb|EEZ71329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685] gi|288567196|gb|EFC88756.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996] Length = 89 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKAAAQKALDATTNAVTNALKKGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86 >gi|57339942|gb|AAW49958.1| hypothetical protein FTT0627 [synthetic construct] Length = 125 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 27 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI +V FKAS LK + Sbjct: 87 RNPKTGETIKIPASKVPSFKASKGLKDAV 115 >gi|313828230|gb|EFS65944.1| DNA-binding protein HU [Propionibacterium acnes HL063PA2] gi|314914530|gb|EFS78361.1| DNA-binding protein HU [Propionibacterium acnes HL005PA4] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L + I + +GE +++ T ++ +R G Sbjct: 1 MTKSELIKTVAKQASLTEAQTNEAVKALPDVITAALAKGEKVQLPGLFTAETVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|326790215|ref|YP_004308036.1| histone family protein DNA-binding protein [Clostridium lentocellum DSM 5427] gi|326540979|gb|ADZ82838.1| histone family protein DNA-binding protein [Clostridium lentocellum DSM 5427] Length = 92 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++S + +S+KD+ + + + + + G I++ F TF V ++ RVG Sbjct: 1 MNKSELVAAMSAKAEISKKDAEKALKAFEDVVMEELQAGGKIQLVGFGTFEVTERKPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +TN+E+ I + FK LK Sbjct: 61 RNPKTNEEMPIPGGKAPKFKPGKALK 86 >gi|187734792|ref|YP_001876904.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|187424844|gb|ACD04123.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 101 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KT+T+ DLV IS E ++ + V + I + G+ + I +F TF VK+ Sbjct: 1 MAKTLTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVK 60 Query: 61 SRVGRNLQT-NQEVKIDPRRVVVFKASSILKKRI 93 +VGRN + +Q+V I R VV FK LK ++ Sbjct: 61 PKVGRNPKNPDQDVPIPARSVVKFKVGKELKDQV 94 >gi|88857365|ref|ZP_01132008.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] gi|88820562|gb|EAR30374.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ ++R + + +S G ++ + F TF VK + +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAASRALDAFTGAVSNSLKEGNSVALVGFGTFSVKARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I + FKA LK + Sbjct: 61 RNPQTGEEIQISAANIPSFKAGKGLKDSV 89 >gi|317152780|ref|YP_004120828.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316943031|gb|ADU62082.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ G S+ + + + + I G + ++ F TF V ++ +R G Sbjct: 1 MTKAELVAKIAEKNGTSKAQAEASMNAILDVIQGELAAGNKLTLTGFGTFSVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI +V FK +LK+ + Sbjct: 61 RNPRTGKEIKIPACKVAQFKPGKVLKEAV 89 >gi|315419707|gb|ADU15823.1| histone-like protein [Streptococcus parasanguinis] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 49/85 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT +E++I +V FKA LK Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALK 87 >gi|213963105|ref|ZP_03391363.1| DNA-binding protein HU [Capnocytophaga sputigena Capno] gi|213954189|gb|EEB65513.1| DNA-binding protein HU [Capnocytophaga sputigena Capno] Length = 116 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + GL R D V +E+ +S G+ + + F +F +K + + G Sbjct: 20 MTKAEIVSKISDKLGLDRNDVQLTVENFMDEVINSLESGQNVYLRGFGSFIIKTRAEKTG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 80 RNISKNTTIKIPAHNIPAFKPAKVF 104 >gi|33240850|ref|NP_875792.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238379|gb|AAQ00445.1| Bacterial nucleoid DNA-binding protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D V I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVALVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRV 89 >gi|37524501|ref|NP_927845.1| Na-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783925|emb|CAE12787.1| NA-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I +S G+++++ F TF V + R G Sbjct: 1 MNKTELVDAIAESTELTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I V F A LK + Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAV 89 >gi|86143784|ref|ZP_01062160.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217] gi|85829827|gb|EAQ48289.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217] Length = 98 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V T E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGIEKNDVQATVETFMTEVKNSLEGGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|330970215|gb|EGH70281.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+ +I+++ L+++ S R + + EI + R +++ + TF + +G+R G+N Sbjct: 3 KPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGLGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKALK 86 >gi|149910317|ref|ZP_01898961.1| DNA-binding protein, HU family [Moritella sp. PE36] gi|149806677|gb|EDM66644.1| DNA-binding protein, HU family [Moritella sp. PE36] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++ + +S+ + R + + + ++ V E++ + F TF V+ + +R G Sbjct: 1 MNKAQLIDCVAAKADISKAAAGRAIDAMIESVTETLVTEESVTLVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I ++ FKA +LK Sbjct: 61 RNPQTGAEIQIAASKLPAFKAGKLLK 86 >gi|311745198|ref|ZP_07718983.1| DNA-binding protein HU [Algoriphagus sp. PR1] gi|126577721|gb|EAZ81941.1| DNA-binding protein HU [Algoriphagus sp. PR1] Length = 102 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 53/102 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS + G+ + D T+ V F + DS GE I + F +F K++ ++ Sbjct: 1 MTKAEVITKISDKTGIQKDDVTQTVEAFFKVVKDSMSEGENIYVRGFGSFINKKRAKKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN+ N + ID + FK S + ++I + + ++ D Sbjct: 61 RNISKNTAIVIDEHYIPAFKPSKVFVEKIKNSKKIKELAPQD 102 >gi|146309415|ref|YP_001189880.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp] gi|145577616|gb|ABP87148.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L++ + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK LK Sbjct: 63 PQTGQPVKIKASNTVAFKPGKSLK 86 >gi|213963610|ref|ZP_03391862.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno] gi|213953738|gb|EEB65068.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno] Length = 92 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 51/85 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GL++ D+ + V F+ + S +G+ + I F ++ V +K +R Sbjct: 1 MNKTELIDAIAAEAGLTKADAKKAVEAFFSNVEKSLKQGKKVAIVGFGSWSVTKKEARDA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T +K+ ++VV FKA + L Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGTEL 85 >gi|167854637|ref|ZP_02477417.1| integration host factor, alpha chain [Haemophilus parasuis 29755] gi|219870912|ref|YP_002475287.1| integration host factor subunit alpha [Haemophilus parasuis SH0165] gi|254803517|sp|B8F4T7|IHFA_HAEPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|167854174|gb|EDS25408.1| integration host factor, alpha chain [Haemophilus parasuis 29755] gi|219691116|gb|ACL32339.1| integration host factor, alpha chain/bacterial nucleoid DNA-binding protein [Haemophilus parasuis SH0165] Length = 98 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 56/90 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ + GL ++ + +FV F EI S GE +K+S F F V+ K +R Sbjct: 2 ALTKIEIAENLVERCGLDKRIAKQFVEDFFEEIRRSLESGEEVKLSGFGNFTVRDKKARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V + RRVVVFKA L++R+ Sbjct: 62 GRNPKTGEDVAVSARRVVVFKAGQKLRERV 91 >gi|71278109|ref|YP_268791.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H] gi|71143849|gb|AAZ24322.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ IS+ +++ + R + +L + + G + + F T+ V + +R G Sbjct: 1 MNKSELIAKISEGADITKASAGRALDSLIDSVTTELASGGDVALVGFGTYKVNDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAV 89 >gi|13472793|ref|NP_104360.1| integration host factor subunit beta [Mesorhizobium loti MAFF303099] gi|260460500|ref|ZP_05808751.1| integration host factor, beta subunit [Mesorhizobium opportunistum WSM2075] gi|319781467|ref|YP_004140943.1| integration host factor, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|21362613|sp|Q98GS0|IHFB_RHILO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|14023540|dbj|BAB50146.1| integration host factor beta chain [Mesorhizobium loti MAFF303099] gi|259033605|gb|EEW34865.1| integration host factor, beta subunit [Mesorhizobium opportunistum WSM2075] gi|317167355|gb|ADV10893.1| integration host factor, beta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 94 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L +D V +F+EI D+ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V+++ + V FK L++R+ Sbjct: 61 GRNPRTGESVEVEEKWVPFFKTGKELRERL 90 >gi|283852456|ref|ZP_06369725.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|303249426|ref|ZP_07335647.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|283572194|gb|EFC20185.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|302489168|gb|EFL49139.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 100 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++D+V I ++ +R + V L + S + ++ +S F F K +R Sbjct: 4 KTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKKDHSLLVSGFGKFESYDKKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS 86 GRN QTN+ + + PR+VVVF+ S Sbjct: 64 KGRNPQTNESIMLPPRKVVVFRLS 87 >gi|14194654|sp|Q9LA96|DBHA_AERHY RecName: Full=DNA-binding protein HU-alpha Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +I+ + LS+ + + + N I S G+A+++ F TF V + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I V F A LK + Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89 >gi|254520528|ref|ZP_05132584.1| histone family protein DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226914277|gb|EEH99478.1| histone family protein DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S+S++ L++KD+ + + + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMSEKSKLTKKDAELALKSFIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I V VFKA K+++ Sbjct: 61 RNPRTKETINIPASTVPVFKAGKEFKEKV 89 >gi|319898049|ref|YP_004136246.1| DNA-binding protein hu [Haemophilus influenzae F3031] gi|317433555|emb|CBY81939.1| DNA-binding protein HU [Haemophilus influenzae F3031] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ L++K + + + I S +GE +++ F TF V ++ +R G Sbjct: 1 MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89 >gi|291615208|ref|YP_003525365.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291585320|gb|ADE12978.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 94 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G S+ D+ R + L + + + +G+ + + F TF V+++ +R G Sbjct: 1 MNRKELIDALATKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +KI + FKA + LK + Sbjct: 61 RNPSTGAAIKIKASKQPAFKAGATLKAAV 89 >gi|109898780|ref|YP_662035.1| integration host factor, beta subunit [Pseudoalteromonas atlantica T6c] gi|332306875|ref|YP_004434726.1| integration host factor, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|123171106|sp|Q15T07|IHFB_PSEA6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|109701061|gb|ABG40981.1| integration host factor, beta subunit [Pseudoalteromonas atlantica T6c] gi|332174204|gb|AEE23458.1| integration host factor, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 96 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ K + +D + + ++ + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLADKARHVPSRDVELAIKEMLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V++D + V FK L++R+ +D+ Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRERVNEDL 94 >gi|242240289|ref|YP_002988470.1| transcriptional regulator HU subunit beta [Dickeya dadantii Ech703] gi|242132346|gb|ACS86648.1| histone family protein DNA-binding protein [Dickeya dadantii Ech703] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAV 89 >gi|260768944|ref|ZP_05877878.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972] gi|260616974|gb|EEX42159.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972] gi|315180640|gb|ADT87554.1| DNA-binding protein HU-beta [Vibrio furnissii NCTC 11218] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ +S+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAANADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFAVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86 >gi|14194637|sp|Q9XB20|DBH_STRGN RecName: Full=DNA-binding protein HU gi|5209334|gb|AAD40811.1|L40356_1 histone-like DNA-binding protein [Streptococcus gordonii] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ ++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E KI +V FKA LK Sbjct: 64 PQTGKETKIAASKVPAFKAGKALK 87 >gi|306825075|ref|ZP_07458417.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432511|gb|EFM35485.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATDLTKKDSAAAVDAVFAAVTEYLTAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FKA LK Sbjct: 64 PQTGKEIEIAASKVPAFKAGKALK 87 >gi|33592108|ref|NP_879752.1| integration host factor beta-subunit [Bordetella pertussis Tohama I] gi|33571752|emb|CAE41253.1| integration host factor beta-subunit [Bordetella pertussis Tohama I] gi|332381524|gb|AEE66371.1| integration host factor beta-subunit [Bordetella pertussis CS] Length = 119 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 58/102 (56%), Gaps = 3/102 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN ++ ++V + ++V FKA L++ + D+ G D Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELREWV--DLVGNDQGDD 100 >gi|330505647|ref|YP_004382516.1| nucleoid protein HU subunit alpha [Pseudomonas mendocina NK-01] gi|328919933|gb|AEB60764.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina NK-01] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L++ + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKTDLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK LK Sbjct: 63 PQTGQPVKIKASNTVAFKPGKSLK 86 >gi|260587366|ref|ZP_05853279.1| DNA-binding protein HU [Blautia hansenii DSM 20583] gi|331083667|ref|ZP_08332778.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA] gi|260542233|gb|EEX22802.1| DNA-binding protein HU [Blautia hansenii DSM 20583] gi|330403878|gb|EGG83430.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV +++++ LS+KD+ + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNRTELVAAMAEKTQLSKKDADLALKAFIDVVSEEMQKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I + FKA LK Sbjct: 61 RNPQTGETMTIAASKSPKFKAGKALK 86 >gi|119476199|ref|ZP_01616551.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143] gi|119450826|gb|EAW32060.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143] Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ L + + R + + + + G+ + + F TF VK + +R G Sbjct: 1 MNKSELIEAIAASADLPKAAAGRALDAMVETVTGALKDGDQVVLVGFGTFAVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIKAAKVPGFKAGKALKDAV 89 >gi|312879957|ref|ZP_07739757.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260] gi|310783248|gb|EFQ23646.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260] Length = 93 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV ++K L++K + V LF + + +G+ +++ F TF V+++ +R Sbjct: 1 MTKADLVNELAKAVEDLTKKKAAEIVDALFETVQGALAKGDKVQVVGFGTFEVQRRAARQ 60 Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILK 90 GRN Q + + I + V VF+A LK Sbjct: 61 GRNPQDPKKTINIPAKNVPVFRAGKALK 88 >gi|71083518|ref|YP_266237.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1062] gi|91762063|ref|ZP_01264028.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1002] gi|71062631|gb|AAZ21634.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1062] gi|91717865|gb|EAS84515.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1002] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 49/87 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +S LS+ D+ R T+ N I D+ + +KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87 >gi|315419711|gb|ADU15825.1| histone-like protein [Streptococcus parasanguinis] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 49/84 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I +V FKA LK Sbjct: 64 PQTGKEIEIAASKVPTFKAGKALK 87 >gi|253996886|ref|YP_003048950.1| integration host factor subunit beta [Methylotenera mobilis JLW8] gi|253983565|gb|ACT48423.1| integration host factor, beta subunit [Methylotenera mobilis JLW8] Length = 93 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ GE I+I F +F + + R+ Sbjct: 1 MTKSELITLLAERFPQLVMKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FKA L++R+ Sbjct: 61 GRNPKTGSKVEVPEKHVPHFKAGKELRERV 90 >gi|218282473|ref|ZP_03488732.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989] gi|218216569|gb|EEC90107.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989] Length = 95 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 9/104 (8%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + L +++S + +S+KD+ V +FNE+ D+ + I++F F + + Sbjct: 1 MGKYVNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 SR+G N T + + I ++ F+ S LK KCNK Sbjct: 61 SRMGINPVTKERMMIQATKLPKFRPSQTLK---------NKCNK 95 >gi|16759431|ref|NP_455048.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763832|ref|NP_459447.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142797|ref|NP_806139.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414393|ref|YP_151468.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179063|ref|YP_215480.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161504372|ref|YP_001571484.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615354|ref|YP_001589319.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551733|ref|ZP_02345486.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990435|ref|ZP_02571535.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231440|ref|ZP_02656498.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237566|ref|ZP_02662624.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240280|ref|ZP_02665212.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261112|ref|ZP_02683085.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465545|ref|ZP_02699427.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818937|ref|ZP_02830937.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446645|ref|YP_002039694.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449059|ref|YP_002044486.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469706|ref|ZP_03075690.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735846|ref|YP_002113482.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249293|ref|YP_002145432.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265364|ref|ZP_03165438.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363313|ref|YP_002142950.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246187|ref|YP_002214405.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390435|ref|ZP_03217046.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930591|ref|ZP_03221521.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351762|ref|YP_002225563.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855931|ref|YP_002242582.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213160791|ref|ZP_03346501.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419827|ref|ZP_03352893.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425853|ref|ZP_03358603.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582252|ref|ZP_03364078.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622866|ref|ZP_03375649.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646002|ref|ZP_03376055.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850135|ref|ZP_03381033.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582289|ref|YP_002636087.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911418|ref|ZP_04655255.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289811835|ref|ZP_06542464.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|60392171|sp|P0A1R8|DBHB_SALTY RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|60392172|sp|P0A1R9|DBHB_SALTI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|25294358|pir||AF0558 DNA-binding protein HU-beta [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|581767|emb|CAA30692.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418958|gb|AAL19406.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501722|emb|CAD08910.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhi] gi|29138429|gb|AAO69999.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128650|gb|AAV78156.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126696|gb|AAX64399.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160865719|gb|ABX22342.1| hypothetical protein SARI_02483 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364718|gb|ABX68486.1| hypothetical protein SPAB_03125 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405308|gb|ACF65530.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407363|gb|ACF67582.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456070|gb|EDX44909.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711348|gb|ACF90569.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631882|gb|EDX50402.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094790|emb|CAR60323.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212996|gb|ACH50393.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243619|gb|EDY26239.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289548|gb|EDY28911.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940703|gb|ACH78036.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602880|gb|EDZ01426.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320525|gb|EDZ05728.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271543|emb|CAR36361.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323417|gb|EDZ11256.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330927|gb|EDZ17691.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333955|gb|EDZ20719.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339741|gb|EDZ26505.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344199|gb|EDZ30963.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350073|gb|EDZ36704.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707734|emb|CAR32019.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466816|gb|ACN44646.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245734|emb|CBG23531.1| DNA-binding protein Hu-beta [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992167|gb|ACY87052.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157062|emb|CBW16546.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911484|dbj|BAJ35458.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084725|emb|CBY94516.1| Integration host factor subunit beta IHF-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226029|gb|EFX51080.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614729|gb|EFY11658.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618835|gb|EFY15723.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623542|gb|EFY20381.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629159|gb|EFY25938.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631880|gb|EFY28634.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637383|gb|EFY34085.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642068|gb|EFY38678.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647887|gb|EFY44362.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652565|gb|EFY48919.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653273|gb|EFY49606.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660578|gb|EFY56814.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664730|gb|EFY60923.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669217|gb|EFY65367.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670762|gb|EFY66895.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678999|gb|EFY75054.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682028|gb|EFY78053.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685143|gb|EFY81140.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713524|gb|EFZ05095.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128771|gb|ADX16201.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192963|gb|EFZ78186.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196955|gb|EFZ82097.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203940|gb|EFZ88957.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206975|gb|EFZ91928.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214178|gb|EFZ98936.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214498|gb|EFZ99249.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219160|gb|EGA03657.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227004|gb|EGA11185.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230178|gb|EGA14298.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233916|gb|EGA18005.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238390|gb|EGA22448.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244077|gb|EGA28086.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246238|gb|EGA30221.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251864|gb|EGA35727.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257860|gb|EGA41539.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261126|gb|EGA44718.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264944|gb|EGA48443.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272507|gb|EGA55914.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622154|gb|EGE28499.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626797|gb|EGE33140.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987400|gb|AEF06383.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|226110|prf||1410323A histone-like protein Length = 90 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89 >gi|325279829|ref|YP_004252371.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324311638|gb|ADY32191.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 89 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 52/88 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +I+++ GL++ DS + + + ++ G+ + + F +F V ++ +R G Sbjct: 1 MNKAQLIDAIAEKAGLTKADSKKALEAFVETVGEALKGGDKVALIGFGSFSVSERSARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + + I ++VV FKA + L ++ Sbjct: 61 RNPQTGKTITIPAKKVVKFKAGAELAEK 88 >gi|77461821|ref|YP_351328.1| nucleoid protein HU alpha subunit [Pseudomonas fluorescens Pf0-1] gi|77385824|gb|ABA77337.1| DNA-binding protein HU1 [Pseudomonas fluorescens Pf0-1] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86 >gi|331001373|ref|ZP_08324997.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] gi|329568632|gb|EGG50434.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] Length = 91 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+++++ + +S+ + R V + + I ++ G+ +++ F TF V ++ +R G Sbjct: 2 MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RNL+TN+ + I R+V F A LK Sbjct: 62 RNLRTNKSIDIPARKVPKFVAGKNLK 87 >gi|313904045|ref|ZP_07837425.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] gi|313471194|gb|EFR66516.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] Length = 89 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ V+ I+++ G ++KD+ FV I ++ G+ + F T+ V+++ +R G Sbjct: 1 MNKTEFVQKIAEKTGSTKKDAAAFVDAYAEVITEALKSGDKVAFPGFGTYEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + ++I + FKA LK Sbjct: 61 RNPATGETIQIAASKSPAFKAGKALK 86 >gi|312795456|ref|YP_004028378.1| integration host factor beta-subunit [Burkholderia rhizoxinica HKI 454] gi|312167231|emb|CBW74234.1| Integration host factor beta-subunit [Burkholderia rhizoxinica HKI 454] Length = 109 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V + + + D+ G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKAMLDAMSDALANGHRIEIRGFGSFALNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ + V++ + V FK L++R+ D G+ D V + Sbjct: 61 GRNPKSGERVQVPEKWVPHFKPGKELRERV-DGKAGQPMKADSVEA 105 >gi|310766847|gb|ADP11797.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia sp. Ejp617] Length = 90 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ + +S+ R + + + S GE + + +F TF V+++ R G Sbjct: 1 MNKSQLIEKIAADADVSKAAVGRILEAFIDTVTKSLQAGEEVALLNFGTFSVRERAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I R+V F+A L++ + Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAV 89 >gi|239904866|ref|YP_002951604.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239794729|dbj|BAH73718.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 100 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++D+V I ++ +R + V L + S R ++ +S F F K +R Sbjct: 4 KTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS 86 GRN QTN + + PR+VVVF+ S Sbjct: 64 KGRNPQTNASIMLPPRKVVVFRLS 87 >gi|309813025|ref|ZP_07706753.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185] gi|308433097|gb|EFP57001.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185] Length = 91 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RSDL +I++ G+S KD+T + L + I ++ RG+ I++ T ++ +R G Sbjct: 1 MNRSDLASTIAQRTGVSVKDATAVLAGLNDVIIEAVGRGDKIQLPGLLTIERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I A S LK Sbjct: 61 RNPQTGAEIEIPAGYAAKVTAGSKLK 86 >gi|108760828|ref|YP_631695.1| integration host factor subunit beta [Myxococcus xanthus DK 1622] gi|27804850|gb|AAO22888.1| hypothetical protein [Myxococcus xanthus] gi|108464708|gb|ABF89893.1| integration host factor, beta subunit [Myxococcus xanthus DK 1622] Length = 127 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ I + + R++ V +F E+ + + G I++ F F V+ + +R Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T Q V + RR + F A L++R+ Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERL 90 >gi|260913274|ref|ZP_05919756.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325] gi|260632861|gb|EEX51030.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325] Length = 90 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S G+ +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGQPVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E+KI +V F A LK Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALK 86 >gi|77919476|ref|YP_357291.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380] gi|77545559|gb|ABA89121.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380] Length = 94 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S G LS+K+S V TL + I D+ V G+ ++I F +F V+ + +R Sbjct: 1 MTKSELIEELSYLNGILSKKESELVVNTLLDGIRDALVGGDRVEIRGFGSFTVRTREARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + V I ++ FK L++R+ Sbjct: 61 ARNPKSGEVVAIPAKKTAFFKTGKQLRERV 90 >gi|15964139|ref|NP_384492.1| integration host factor subunit beta [Sinorhizobium meliloti 1021] gi|307301284|ref|ZP_07581046.1| integration host factor, beta subunit [Sinorhizobium meliloti BL225C] gi|307317955|ref|ZP_07597392.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83] gi|21362611|sp|Q92SJ7|IHFB_RHIME RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|15073315|emb|CAC41823.1| Probable integration host factor beta-subunit [Sinorhizobium meliloti 1021] gi|306896357|gb|EFN27106.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83] gi|306903740|gb|EFN34327.1| integration host factor, beta subunit [Sinorhizobium meliloti BL225C] Length = 103 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T V ++ + V FK L++R+ M +DD Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDNNNGEDD 103 >gi|255994801|ref|ZP_05427936.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989] gi|255993514|gb|EEU03603.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989] Length = 92 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ G ++KD+ + + + ++ ++GE +++ F TF + + +R G Sbjct: 1 MNKADLVAVIAEKTGFTKKDAEATINAFVSTVEEALIKGEKVQLIGFGTFEARDRKARKG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + EV KI + VFKA LK + Sbjct: 61 RNPRNPGEVIKIPASKAPVFKAGKALKAAV 90 >gi|288958412|ref|YP_003448753.1| DNA-binding protein HU-beta [Azospirillum sp. B510] gi|288910720|dbj|BAI72209.1| DNA-binding protein HU-beta [Azospirillum sp. B510] Length = 91 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G+ + D+ + V +F I + RGE ++++ F F V ++ +R G Sbjct: 1 MNQAELIETVATNAGIKKADAAKVVQAVFEGISGALGRGEDVRLAGFGIFEVAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + V I + FK + L+ Sbjct: 61 RNPRTGEVVAIAASKAPKFKPAKQLR 86 >gi|32035258|ref|ZP_00135276.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208092|ref|YP_001053317.1| integration host factor subunit alpha [Actinobacillus pleuropneumoniae L20] gi|165976025|ref|YP_001651618.1| integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149925|ref|YP_001968450.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251009|ref|ZP_07337196.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252240|ref|ZP_07338408.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245471|ref|ZP_07527559.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247585|ref|ZP_07529629.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249814|ref|ZP_07531791.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252164|ref|ZP_07534063.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254425|ref|ZP_07536263.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256636|ref|ZP_07538416.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258884|ref|ZP_07540616.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261070|ref|ZP_07542750.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263249|ref|ZP_07544869.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322514396|ref|ZP_08067442.1| integration host factor subunit alpha [Actinobacillus ureae ATCC 25976] gi|166918495|sp|A3MZX6|IHFA_ACTP2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707365|sp|B3H139|IHFA_ACTP7 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707366|sp|B0BNN9|IHFA_ACTPJ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|126096884|gb|ABN73712.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876126|gb|ABY69174.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915056|gb|ACE61308.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649023|gb|EFL79211.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650140|gb|EFL80309.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853812|gb|EFM86029.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855950|gb|EFM88109.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858164|gb|EFM90243.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860464|gb|EFM92478.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862724|gb|EFM94680.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864884|gb|EFM96787.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867235|gb|EFM99091.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869247|gb|EFN01044.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871466|gb|EFN03190.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322119712|gb|EFX91762.1| integration host factor subunit alpha [Actinobacillus ureae ATCC 25976] Length = 98 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +L +S+ ++ G ++ + FV F EI S +GE +K+S F F +++K +R Sbjct: 2 ALTKIELAESLVEKCGFDKRIAKLFVEQFFEEIRSSLEKGEEVKLSGFGNFSLREKNARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGETVAVTARRVVVFKPGQKLRDRV 91 >gi|315924899|ref|ZP_07921116.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC 23263] gi|315621798|gb|EFV01762.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC 23263] Length = 91 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +++++ GL +KD+ + +T + I ++ +G+ + + F TF V+ + +R G Sbjct: 1 MNKSELVAAMAEKTGLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + ++I FKA K Sbjct: 61 LNPRTKEPIEIKASDAPAFKAGKAFK 86 >gi|303257389|ref|ZP_07343402.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|302859746|gb|EFL82824.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] Length = 90 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 52/86 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+++++ + +S+ + R V + + I ++ G+ +++ F TF V ++ +R G Sbjct: 1 MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RNL+TN+ + I R+V F A LK Sbjct: 61 RNLRTNKSIDIPARKVPKFVAGKNLK 86 >gi|229593397|ref|YP_002875516.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25] gi|312963898|ref|ZP_07778369.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6] gi|229365263|emb|CAY53586.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25] gi|311281933|gb|EFQ60543.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6] Length = 91 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G+N Sbjct: 3 KPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86 >gi|257066457|ref|YP_003152713.1| histone family protein DNA-binding protein [Anaerococcus prevotii DSM 20548] gi|256798337|gb|ACV28992.1| histone family protein DNA-binding protein [Anaerococcus prevotii DSM 20548] Length = 92 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ + + + +S V G+ +++ F TF V+ + +R G Sbjct: 1 MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLVEGDKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV +I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90 >gi|218290666|ref|ZP_03494757.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|258510204|ref|YP_003183638.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239331|gb|EED06529.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|257476930|gb|ACV57249.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 90 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ L +KD+ V +F I ++ GE ++I F TF + + +R G Sbjct: 1 MNKMELINRVAEKTNLKKKDAESAVNAVFEIIEEALANGEKVQIIGFGTFETRSRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V FK + LK+ Sbjct: 61 RNPQTGEVIEIPASTVPAFKPGNKLKE 87 >gi|291434889|ref|YP_003518271.1| DNA-binding protein Hu-beta [Cupriavidus metallidurans CH34] gi|288259483|gb|ADC45367.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding protein) [Cupriavidus metallidurans CH34] Length = 144 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++ GL++ + + + + I ++ RGE + + F TF ++G R+ Sbjct: 1 MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++++ + V FKA K Sbjct: 61 ARNPRTGEEIRVEAAKTVKFKAGQRFK 87 >gi|313835866|gb|EFS73580.1| DNA-binding protein HU [Propionibacterium acnes HL037PA2] gi|314927134|gb|EFS90965.1| DNA-binding protein HU [Propionibacterium acnes HL044PA1] gi|314970776|gb|EFT14874.1| DNA-binding protein HU [Propionibacterium acnes HL037PA3] gi|328906040|gb|EGG25815.1| DNA-binding protein HU [Propionibacterium sp. P08] Length = 91 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L + I + GE +++ T ++ +R G Sbjct: 1 MTKSELIKAVAKQASLTEAQTNEAVKALTDVITAALAEGEKVQLPGLFTAEAVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|329296785|ref|ZP_08254121.1| transcriptional regulator HU subunit beta [Plautia stali symbiont] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKDGDEVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F++ LK + Sbjct: 61 RNPQTGKEITIPAGKVPGFRSGKALKDAV 89 >gi|237725389|ref|ZP_04555870.1| DNA-binding protein HU [Bacteroides sp. D4] gi|265753597|ref|ZP_06088952.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] gi|229436076|gb|EEO46153.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4] gi|263235311|gb|EEZ20835.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + +S++ G + KD+++ V+++ + G I I F TF VK+K R+ N Sbjct: 5 EFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERISINPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 T Q + I P+ V+ +K S LK++ Sbjct: 65 TQQRMLIPPKLVLTYKPSVTLKEK 88 >gi|310657656|ref|YP_003935377.1| hu, DNA-binding transcriptional regulator subunit beta [Clostridium sticklandii DSM 519] gi|308824434|emb|CBH20472.1| HU, DNA-binding transcriptional regulator, beta subunit [Clostridium sticklandii] Length = 102 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ G+++KD+ + + + ++ V GE +++ F TF +++ +R G Sbjct: 1 MNKAELVAKMAEKSGMTKKDTEVALNSFMASVEEALVAGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 RN + +++KI + VFKA LK+++ Sbjct: 61 RNPRDPEKKIKIPASKAPVFKAGKGLKEKV 90 >gi|114564684|ref|YP_752198.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] gi|114335977|gb|ABI73359.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I++ L++ ++ R + + + ++ G+ I I F +F Q+ +R G Sbjct: 1 MNKSELIAKIAENAELTKAEAGRALKSFEEAVTEAMKNGDKISIVGFGSFETTQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLK 86 >gi|323485131|ref|ZP_08090483.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum WAL-14163] gi|323694024|ref|ZP_08108208.1| histone family protein DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323401561|gb|EGA93907.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum WAL-14163] gi|323501960|gb|EGB17838.1| histone family protein DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 92 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV S+S + GL+ + S + + L N I G +++ F F V + R+ Sbjct: 1 MNKRQLVDSMSAKSGLTTRQSEKALNGLMNVIHTELSSGGNVQLVGFGVFRVADRKDRIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI R+ VF+A S LK Sbjct: 61 RNPQTGEAMKIKGRKAPVFRAGSTLK 86 >gi|256419984|ref|YP_003120637.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] gi|256034892|gb|ACU58436.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] Length = 95 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 47/80 (58%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DL+ +I+++ G+ + D + +F E+ ++ GE I I F +F K++ +++GRN Sbjct: 3 KADLINNIAEKTGIPKVDVLVTLEAMFKEVKEALANGEHIYIRGFGSFITKKRAAKIGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKAS 86 ++ N V+I + FK S Sbjct: 63 IKKNVAVEIPEHFIPAFKPS 82 >gi|229182102|ref|ZP_04309394.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] gi|228601353|gb|EEK58882.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] Length = 93 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I +++L K ++++ L +KD T+ + I + GE ++I F TF V+++ +R G Sbjct: 4 INKTELTKVVAEKTELIQKDPVAATQTVLDTITSALANGEKVQILGFGTFEVRERSARTG 63 Query: 65 RNLQTNQEVKI 75 RN QT +E++I Sbjct: 64 RNPQTGEEMQI 74 >gi|217970426|ref|YP_002355660.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] gi|217507753|gb|ACK54764.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV SI+++ G+++ D+ R + + ++ + E + + F +F+V ++ +R G Sbjct: 1 MNKQELVASIAEKAGMTKADAARALDATVAAVTEALRQDETVTLVGFGSFYVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V F+A LK Sbjct: 61 RNPRTGKNIKIKAAKVPKFRAGKGLK 86 >gi|56550597|ref|YP_161663.1| DNA-binding protein HU-beta [Cupriavidus metallidurans CH34] gi|56410303|emb|CAI30185.1| hypothetical DNA-binding protein HU-beta NS1 [Cupriavidus metallidurans CH34] Length = 158 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++ GL++ + + + + I ++ RGE + + F TF ++G R+ Sbjct: 15 MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 74 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++++ + V FKA K Sbjct: 75 ARNPRTGEEIRVEAAKTVKFKAGQRFK 101 >gi|1573405|gb|AAC22089.1| DNA-binding protein HU-alpha (hupA) [Haemophilus influenzae Rd KW20] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 45 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E++I +V F + LK I Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 135 >gi|228969379|ref|ZP_04130226.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228790341|gb|EEM38081.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++K++ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKEAAAATQAVLDTITTALANEEKVQILRFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + FKA LK Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELK 86 >gi|256375007|ref|YP_003098667.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] gi|255919310|gb|ACU34821.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ + + +TR + + + I + +G+ + ++ F +F VK++ +R G Sbjct: 1 MNKAELVSAIAEGADVEKAVATRALDAVLDSITKALAQGDDVVLTGFGSFTVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + V FK LK + Sbjct: 61 RNPQTGEAIEIAASKAVGFKVGKALKDAV 89 >gi|134034140|sp|Q1RK52|HLP_RICBR RecName: Full=Histone-like DNA-binding protein Length = 94 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + ++ E G S+ V +F I D A + + + + +F +F VK K SR Sbjct: 2 TITKEKIAFMLNAELGFSKSLCEEVVNAVFTNILDIA-KEQKLILKNFGSFEVKHKNSRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G N T ++ I+P+ ++ F S+ LK I ++ Sbjct: 61 GINFHTKSQITIEPKNILRFVPSAKLKALINEN 93 >gi|323144209|ref|ZP_08078844.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] gi|322416050|gb|EFY06749.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] Length = 92 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+K GLS S R + + + ++ G+ +++ F TF + ++ SR G Sbjct: 1 MNKSELIEQIAKRSGLSLAGSRRALDAVLASVSEALSEGDRVQLVGFGTFKITERNSREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + F A + LKK + Sbjct: 61 RNPKTGEVIQIPASKTPSFTAGAELKKAV 89 >gi|309389063|gb|ADO76943.1| bacterial nucleoid protein Hbs [Halanaerobium praevalens DSM 2228] Length = 99 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 57/97 (58%), Gaps = 8/97 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVT----TLFNEICDSAVRGE----AIKISSFATFHV 56 +T+++L+ ++++ G+++KD+ V T+ N + A + E +++ F TF V Sbjct: 1 MTKNELIDVVAEKTGVTKKDTGEVVNETIDTIMNYLKSEAKKDEDNRDNVQLIGFGTFEV 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 K + +R GRN QT +E++I R+V VF++ K+ + Sbjct: 61 KDRSARKGRNPQTGEELQIPARKVPVFRSGKSFKETV 97 >gi|294139097|ref|YP_003555075.1| HU family DNA-binding protein [Shewanella violacea DSS12] gi|293325566|dbj|BAJ00297.1| DNA-binding protein, HU family [Shewanella violacea DSS12] Length = 91 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ ++ R + + I ++ G+ I I F +F + +R G Sbjct: 1 MNKTELVAKIAENADLTKAEAARALKSFEETITETLKSGDKISIVGFGSFETTNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT QE++I V FKA LK Sbjct: 61 RNPQTGQEIQIPAATVPKFKAGKTLK 86 >gi|167768371|ref|ZP_02440424.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1] gi|317497690|ref|ZP_07956005.1| bacterial DNA-binding protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709895|gb|EDS20474.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1] gi|291560344|emb|CBL39144.1| Bacterial nucleoid DNA-binding protein [butyrate-producing bacterium SSC/2] gi|316895024|gb|EFV17191.1| bacterial DNA-binding protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 91 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+K+ LS+KD+ + + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAKKTELSKKDAEKALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN ++ + + I + FKA LK Sbjct: 61 RNPRSGEVMHIAASKAPKFKAGKALK 86 >gi|212633423|ref|YP_002309948.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3] gi|212554907|gb|ACJ27361.1| Histone-like bacterial DNA-binding protein [Shewanella piezotolerans WP3] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ GE I I F +F ++ +R G Sbjct: 1 MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86 >gi|315499364|ref|YP_004088168.1| integration host factor, beta subunit [Asticcacaulis excentricus CB 48] gi|315417376|gb|ADU14017.1| integration host factor, beta subunit [Asticcacaulis excentricus CB 48] Length = 98 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E+ +++KD R V + + ++ +G +++ F F V+ + +RV Sbjct: 1 MLKSELIERLASEYPHMTQKDVERIVNLILESMIETLEKGGRVELRGFGAFSVRSRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK+ L++R+ Sbjct: 61 GRNPRTGEAVSVPAKHVPFFKSGKELRERL 90 >gi|322387987|ref|ZP_08061594.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779] gi|322392079|ref|ZP_08065541.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780] gi|321141260|gb|EFX36758.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779] gi|321144979|gb|EFX40378.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780] Length = 91 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRKRAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT +E+KI +V FKA LK+ + Sbjct: 64 PQTGKEIKIKASKVPAFKAGKALKEAV 90 >gi|158425340|ref|YP_001526632.1| integration host factor subunit beta [Azorhizobium caulinodans ORS 571] gi|172048041|sp|A8IN83|IHFB_AZOC5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|158332229|dbj|BAF89714.1| integration host factor beta subunit [Azorhizobium caulinodans ORS 571] Length = 94 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + ++I D+ +G+ +++ F F VKQ+ +R Sbjct: 1 MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V + + V FK +++R+ Sbjct: 61 GRNPRTGKQVDVSSKVVPYFKTGKEMRERL 90 >gi|217973689|ref|YP_002358440.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|217498824|gb|ACK47017.1| histone family protein DNA-binding protein [Shewanella baltica OS223] Length = 91 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E S+ + V + +I + GE I + F TF ++ ++ G Sbjct: 1 MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++ID FKAS+ LK++I Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQI 89 >gi|317153210|ref|YP_004121258.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316943461|gb|ADU62512.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ L++ ++ R + + + V + ++ F TF V+Q+ +RVG Sbjct: 1 MTKAELVVKIAEKANLTKANAERALNAFLESVEGNLVSEGKLTLTGFGTFVVEQRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++KI +VV F+ +LK I Sbjct: 61 RNPRTGADIKIPATKVVKFRPGKLLKDAI 89 >gi|330831142|ref|YP_004394094.1| integration host factor subunit beta [Aeromonas veronii B565] gi|328806278|gb|AEB51477.1| Integration host factor, beta subunit [Aeromonas veronii B565] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +I+ + LS+ + + + N I S G+A+++ F TF V + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVTHRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I V F A LK + Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAV 89 >gi|239831002|ref|ZP_04679331.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG 3301] gi|239823269|gb|EEQ94837.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG 3301] Length = 120 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 3 KTITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + + Sbjct: 25 KAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPA 84 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN +T + V ++ + V FK L+ R+ Sbjct: 85 RSGRNPRTGETVDVEEKWVPFFKTGKELRDRL 116 >gi|120437894|ref|YP_863580.1| histone-like DNA-binding protein [Gramella forsetii KT0803] gi|117580044|emb|CAL68513.1| histone-like bacterial DNA-binding protein [Gramella forsetii KT0803] Length = 96 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS++ G+ + D + + +E+ S G+ + + F +F VK + + G Sbjct: 1 MTKADIVANISEKLGMEKGDVQATIESFMDEVKTSLESGDNVYLRGFGSFVVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + I Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIF 85 >gi|28198389|ref|NP_778703.1| histone-like protein [Xylella fastidiosa Temecula1] gi|182681031|ref|YP_001829191.1| histone family protein DNA-binding protein [Xylella fastidiosa M23] gi|32129475|sp|Q87E48|DBH_XYLFT RecName: Full=DNA-binding protein HU gi|28056459|gb|AAO28352.1| histone-like protein [Xylella fastidiosa Temecula1] gi|182631141|gb|ACB91917.1| histone family protein DNA-binding protein [Xylella fastidiosa M23] gi|307579499|gb|ADN63468.1| histone family protein DNA-binding protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 94 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ G+++ + F TF V+Q+ R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FK LK + Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAV 89 >gi|68249030|ref|YP_248142.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP] gi|68057229|gb|AAX87482.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP] Length = 136 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 45 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E++I +V F + LK I Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAI 135 >gi|298293882|ref|YP_003695821.1| integration host factor subunit beta [Starkeya novella DSM 506] gi|296930393|gb|ADH91202.1| integration host factor, beta subunit [Starkeya novella DSM 506] Length = 97 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEANPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V +D + V FK +++R+ Sbjct: 61 GRNPRTGAHVAVDGKAVPYFKTGKEMRERL 90 >gi|283784266|ref|YP_003364131.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168] gi|282947720|emb|CBG87275.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168] Length = 95 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 6 VNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFSVKERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I +V F+A LK Sbjct: 66 RNPQTGKEITIAAAKVPGFRAGKALK 91 >gi|146344069|ref|YP_001201925.1| putative DNA-binding protein HU [Pseudomonas fluorescens SBW25] gi|146187881|emb|CAM96210.1| putative DNA-binding protein Hu [Pseudomonas fluorescens SBW25] Length = 92 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+ V +++++ GL++ D+ R V + I D+ +G+A+ F F VKQ R G Sbjct: 3 LNKSEFVDAVAEKSGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + I + F A LK I Sbjct: 63 RNPSTGAPITIAAAKKPHFAAGKSLKDAI 91 >gi|119774364|ref|YP_927104.1| HU family DNA-binding protein [Shewanella amazonensis SB2B] gi|119766864|gb|ABL99434.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G I + F TF V+++ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGGKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN Q+ +E+KI ++ FKA LK Sbjct: 61 RNPQSGKEIKIPAAKIPAFKAGKALK 86 >gi|126173989|ref|YP_001050138.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|153000280|ref|YP_001365961.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160874914|ref|YP_001554230.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|125997194|gb|ABN61269.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|151364898|gb|ABS07898.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160860436|gb|ABX48970.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|315267151|gb|ADT94004.1| histone family protein DNA-binding protein [Shewanella baltica OS678] Length = 91 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E S+ + V + +I + GE I + F TF ++ ++ G Sbjct: 1 MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++ID FKAS+ LK++I Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQI 89 >gi|330814759|ref|YP_004362934.1| histone family protein DNA-binding protein [Burkholderia gladioli BSR3] gi|327374751|gb|AEA66102.1| histone family protein DNA-binding protein [Burkholderia gladioli BSR3] Length = 92 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+ + V + + I ++ RGE++++ F F Q+ +R G Sbjct: 1 MNKQELIDAVAASVGVSKTDAGKTVQAVLDVITEAVGRGESVQLIGFGAFSQGQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T E+ I V F A K Sbjct: 61 RNPSTGAEIAIPAANTVKFTAGKPFK 86 >gi|322385064|ref|ZP_08058714.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100] gi|321270974|gb|EFX53884.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100] Length = 91 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 48/84 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87 >gi|257469647|ref|ZP_05633739.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317063883|ref|ZP_07928368.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|313689559|gb|EFS26394.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] Length = 91 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D K++ K +S+ +S R V + EI + G+ + + F V QK R+ Sbjct: 1 MTKKDFAKALFEKGIFVSKAESERKVDAILTEIEEVLKSGDELNFIGWGKFEVVQKAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 GRN +T +E+KI+ ++ V FKA L Sbjct: 61 GRNPKTGEEIKIEAKKTVKFKAGKTL 86 >gi|30249908|ref|NP_841978.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] gi|81722152|sp|Q82TD7|IHFB_NITEU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|30180945|emb|CAD85872.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] Length = 105 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + S RGE I+I F +F + + SRV Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLSRGERIEIRGFGSFDLNYRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA +++ I Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90 >gi|114321434|ref|YP_743117.1| histone family protein DNA-binding protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227828|gb|ABI57627.1| histone family protein DNA-binding protein [Alkalilimnicola ehrlichii MLHE-1] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ +S+ ++R V ++ + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIEAVAQSADISKAAASRAVDSMVECVTNALKEGDQVTLVGFGTFQVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I +V FKA LK + Sbjct: 61 RNPRTGETINIAASKVPSFKAGKALKDAV 89 >gi|259909249|ref|YP_002649605.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia pyrifoliae Ep1/96] gi|224964871|emb|CAX56393.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia pyrifoliae Ep1/96] gi|283479300|emb|CAY75216.1| transcriptional regulator HU subunit beta [Erwinia pyrifoliae DSM 12163] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ + +S+ R + + + S GE + + +F TF V+++ R G Sbjct: 1 MNKSQLIEKIAADADVSKASVGRILEAFIDTVTKSLQVGEEVALLNFGTFSVRERAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I R+V F+A L++ + Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAV 89 >gi|91214902|ref|ZP_01251875.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis ATCC 700755] gi|91187329|gb|EAS73699.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis ATCC 700755] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 55/89 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ G+++ ++ + + + + + +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTNLIDAMAEDAGVTKAEAKKALESFLENVEGALKKGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA S L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAV 89 >gi|56707752|ref|YP_169648.1| histone-like protein HU form B [Francisella tularensis subsp. tularensis SCHU S4] gi|89256252|ref|YP_513614.1| histone-like protein HU form B [Francisella tularensis subsp. holarctica LVS] gi|110670223|ref|YP_666780.1| histone-like protein HU form B [Francisella tularensis subsp. tularensis FSC198] gi|115314709|ref|YP_763432.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica OSU18] gi|134302066|ref|YP_001122035.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis WY96-3418] gi|156502313|ref|YP_001428378.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica FTNF002-00] gi|187931474|ref|YP_001891458.1| DNA-binding protein HU-beta [Francisella tularensis subsp. mediasiatica FSC147] gi|224456822|ref|ZP_03665295.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254367591|ref|ZP_04983612.1| histone-like protein hu form B [Francisella tularensis subsp. holarctica 257] gi|254369241|ref|ZP_04985253.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp. holarctica FSC022] gi|254370256|ref|ZP_04986261.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis FSC033] gi|254874565|ref|ZP_05247275.1| DNA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|290953592|ref|ZP_06558213.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica URFT1] gi|295313093|ref|ZP_06803783.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica URFT1] gi|56604244|emb|CAG45260.1| Histone-like protein HU form B [Francisella tularensis subsp. tularensis SCHU S4] gi|89144083|emb|CAJ79334.1| Histone-like protein HU form B [Francisella tularensis subsp. holarctica LVS] gi|110320556|emb|CAL08643.1| Histone-like protein HU form B [Francisella tularensis subsp. tularensis FSC198] gi|115129608|gb|ABI82795.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica OSU18] gi|134049843|gb|ABO46914.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis WY96-3418] gi|134253402|gb|EBA52496.1| histone-like protein hu form B [Francisella tularensis subsp. holarctica 257] gi|151568499|gb|EDN34153.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis FSC033] gi|156252916|gb|ABU61422.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122191|gb|EDO66331.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp. holarctica FSC022] gi|187712383|gb|ACD30680.1| DNA-binding protein HU-beta [Francisella tularensis subsp. mediasiatica FSC147] gi|254840564|gb|EET19000.1| DNA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282158923|gb|ADA78314.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis NE061598] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI +V FKAS LK + Sbjct: 61 RNPKTGETIKIPASKVPSFKASKGLKDAV 89 >gi|326799514|ref|YP_004317333.1| histone family protein DNA-binding protein [Sphingobacterium sp. 21] gi|326550278|gb|ADZ78663.1| histone family protein DNA-binding protein [Sphingobacterium sp. 21] Length = 113 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ ++DL+ I+ + G+++ + + ++++ N + + +GE++ + F TF V Q+ +R Sbjct: 17 TMNKADLITKIAADAGITKVQAEKALSSITNSVTTTLKKGESVSLIGFGTFTVGQRAARS 76 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +KI +V F+ L++ + Sbjct: 77 GRNPNTGAVIKIKATKVPKFRPGKSLREAV 106 >gi|283954472|ref|ZP_06371992.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414] gi|283794089|gb|EFC32838.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414] Length = 98 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + +K+ RVV FK LK+ + Sbjct: 61 RVPSTGKTIKVPATRVVKFKVGKNLKEAV 89 >gi|149372186|ref|ZP_01891456.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified eubacterium SCB49] gi|149354953|gb|EDM43515.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified eubacterium SCB49] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++++ G+++ + + + + + S +G + + F ++ V ++ +R G Sbjct: 1 MNKSDLIDAMAEDAGVTKAAAKKALESFLGNVEGSLKKGNRVSLVGFGSWSVTKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA S L+ + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQSSV 89 >gi|319944338|ref|ZP_08018612.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599] gi|319742299|gb|EFV94712.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599] Length = 93 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS E +S+ + R +T+ N I + G+ + + F TFH ++ SR G Sbjct: 1 MNKSELIDTISSEADISKAAAERALTSAMNAIMKAVAEGDRVTLVGFGTFHASKRASRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T ++++I V F + K Sbjct: 61 LNPRTGEKIEIAAANVPKFTPGAAFK 86 >gi|109899438|ref|YP_662693.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica T6c] gi|332305577|ref|YP_004433428.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|109701719|gb|ABG41639.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica T6c] gi|332172906|gb|AEE22160.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ S R + L + I + G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAASADISKAASGRALDALTDAITAALKEGDQVALVGFGTFSVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + ++I +V FKA LK Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALK 86 >gi|253998814|ref|YP_003050877.1| integration host factor subunit beta [Methylovorus sp. SIP3-4] gi|313200901|ref|YP_004039559.1| integration host factor subunit beta [Methylovorus sp. MP688] gi|253985493|gb|ACT50350.1| integration host factor, beta subunit [Methylovorus sp. SIP3-4] gi|312440217|gb|ADQ84323.1| integration host factor, beta subunit [Methylovorus sp. MP688] Length = 94 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ GE I+I F +F + + R+ Sbjct: 1 MTKSELIANLAARFPQLVVKDAELSVKAIIDSMADNLASGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FKA L++R+ Sbjct: 61 GRNPKTGSKVQVPEKYVPHFKAGKELRERV 90 >gi|197284030|ref|YP_002149902.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320] gi|194681517|emb|CAR40401.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320] Length = 91 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ +++ + R V + I +S +G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V F+A LK + Sbjct: 61 RNPQTGKEIQIAAAKVPAFRAGKGLKDAV 89 >gi|313890818|ref|ZP_07824443.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN 20026] gi|313120919|gb|EFR44033.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN 20026] Length = 91 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLAEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT E++I +V FKA LK Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALK 87 >gi|53715702|ref|YP_101694.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46] gi|60683640|ref|YP_213784.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis NCTC 9343] gi|253566484|ref|ZP_04843937.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5] gi|265767353|ref|ZP_06095019.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|52218567|dbj|BAD51160.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46] gi|60495074|emb|CAH09893.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis NCTC 9343] gi|251944656|gb|EES85131.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5] gi|263252658|gb|EEZ24170.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|301165152|emb|CBW24722.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis 638R] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + F+ + + G+ I + F TF V ++ +R+G Sbjct: 1 MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + ++I ++V FK + L I Sbjct: 61 INPSTKKAIEIPAKKVAKFKPGAELTDAI 89 >gi|332524208|ref|ZP_08400434.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2] gi|332107543|gb|EGJ08767.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2] Length = 90 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I+++ LS+ +TR + + + G+++ I+ F TF V ++ +R G Sbjct: 1 MNKTDLIAHIAQQADLSKASATRALEAALEGVQTALKNGDSVAIAGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +++ +V F+ LK Sbjct: 61 RNPRTGEAIEVKAAKVPKFRPGKALK 86 >gi|53713715|ref|YP_099707.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60681986|ref|YP_212130.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis NCTC 9343] gi|265764039|ref|ZP_06092607.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|52216580|dbj|BAD49173.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60493420|emb|CAH08206.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis NCTC 9343] gi|263256647|gb|EEZ27993.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|301163424|emb|CBW22975.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis 638R] Length = 96 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 42/82 (51%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +S+ G + K ++ +T+L ++I AI I F TF VK+K R+ N Sbjct: 5 EFTSELSRRLGYNTKYTSELITSLLSDITQELQESNAIGIQGFGTFEVKKKAERIVINPV 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T + + P+ V+ FK S ILK Sbjct: 65 TKLRLLVPPKLVLAFKPSPILK 86 >gi|163787183|ref|ZP_02181630.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1] gi|159877071|gb|EDP71128.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1] Length = 96 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV IS + G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADLVAKISDKLGIEKGDVQATVETFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|126668934|ref|ZP_01739875.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17] gi|126626597|gb|EAZ97253.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I++ +S+ + R + + I + + + + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAESADISKAAAGRALDAMTTSITSALKKDDQVTLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIKASKVPGFKAGKALKDAV 89 >gi|325284684|ref|YP_004264147.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] gi|324316173|gb|ADY27287.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] Length = 89 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ ++++ GL++K + V+T+ + + ++ G+A+ + T VK+ +R G Sbjct: 1 MNKSQLVEKVAEQTGLTKKQADEAVSTMLDTVVEALRGGQAVGLPGLGTLSVKETAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++++I + V FK ++ LK + Sbjct: 61 VKPGTTEKIQIPAGKKVAFKVATTLKGNL 89 >gi|323697932|ref|ZP_08109844.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323457864|gb|EGB13729.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ L++ ++ R + + + V + ++ F TF V+ + SRVG Sbjct: 1 MTKAELVVKIAEKANLTKANAERALNAFLETVESTLVSEGKLTLTGFGTFMVELRKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T E+KI +VV F+ ILK Sbjct: 61 RNPRTGLELKIPETKVVKFRPGKILK 86 >gi|78485543|ref|YP_391468.1| integration host factor, beta subunit [Thiomicrospira crunogena XCL-2] gi|78363829|gb|ABB41794.1| integration host factor, beta subunit [Thiomicrospira crunogena XCL-2] Length = 108 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ K+ S+KD + + + + D+ G+ I+I F +F + + +R+ Sbjct: 8 MTKSELIELIARKQTQFSQKDVELAINQILDSMIDTLSEGDRIEIRGFGSFSLHHRKARL 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V++ +RV FK L+ R+ Sbjct: 68 GRNPKTGEKVELSEKRVPHFKPGKSLRDRV 97 >gi|329122306|ref|ZP_08250894.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116] gi|327473867|gb|EGF19284.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ L++K + + + I S GE +++ F TF V ++ +R G Sbjct: 1 MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAI 89 >gi|304440463|ref|ZP_07400352.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371215|gb|EFM24832.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ L++KD+ + + D+ GE +++ F TF V+++ +R G Sbjct: 1 MNKAELIANIAEKSNLTKKDAEMALNGFLTTVQDALASGEKVQLVGFGTFEVRERKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAV 90 >gi|304411460|ref|ZP_07393074.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|307305218|ref|ZP_07584966.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|304350315|gb|EFM14719.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|306911521|gb|EFN41946.1| histone family protein DNA-binding protein [Shewanella baltica BA175] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E S+ + V + +I + GE I + F TF ++ ++ G Sbjct: 1 MNKAQLIQRIAAELNASQSSTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++ID FKAS+ LK++I Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQI 89 >gi|170693720|ref|ZP_02884878.1| integration host factor, beta subunit [Burkholderia graminis C4D1M] gi|209519345|ref|ZP_03268144.1| integration host factor, beta subunit [Burkholderia sp. H160] gi|295677276|ref|YP_003605800.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002] gi|307730619|ref|YP_003907843.1| integration host factor subunit beta [Burkholderia sp. CCGE1003] gi|323526953|ref|YP_004229106.1| integration host factor subunit beta [Burkholderia sp. CCGE1001] gi|170141502|gb|EDT09672.1| integration host factor, beta subunit [Burkholderia graminis C4D1M] gi|209500229|gb|EEA00286.1| integration host factor, beta subunit [Burkholderia sp. H160] gi|295437119|gb|ADG16289.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002] gi|307585154|gb|ADN58552.1| integration host factor, beta subunit [Burkholderia sp. CCGE1003] gi|323383955|gb|ADX56046.1| integration host factor, beta subunit [Burkholderia sp. CCGE1001] Length = 107 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ +G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALAKGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FK L++R+ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90 >gi|169832956|ref|YP_001694534.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Hungary19A-6] gi|168995458|gb|ACA36070.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Hungary19A-6] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFVAVADYLAAGEKVQLIGFGNFEVRERAERKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEMTIAASKVPAFKAGKALK 87 >gi|15900980|ref|NP_345584.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4] gi|15903064|ref|NP_358614.1| DNA-binding protein HU [Streptococcus pneumoniae R6] gi|111658012|ref|ZP_01408716.1| hypothetical protein SpneT_02000809 [Streptococcus pneumoniae TIGR4] gi|116516205|ref|YP_816472.1| DNA-binding protein HU [Streptococcus pneumoniae D39] gi|148985086|ref|ZP_01818329.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71] gi|148989157|ref|ZP_01820547.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73] gi|148994562|ref|ZP_01823721.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68] gi|148998383|ref|ZP_01825825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70] gi|149003768|ref|ZP_01828600.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69] gi|149006210|ref|ZP_01829922.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74] gi|149012891|ref|ZP_01833804.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75] gi|149024915|ref|ZP_01836316.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72] gi|168483191|ref|ZP_02708143.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1873-00] gi|168486472|ref|ZP_02710980.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1087-00] gi|168488958|ref|ZP_02713157.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae SP195] gi|168492008|ref|ZP_02716151.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC0288-04] gi|168493057|ref|ZP_02717200.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC3059-06] gi|168576162|ref|ZP_02722056.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae MLV-016] gi|182684138|ref|YP_001835885.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14] gi|194397873|ref|YP_002037741.1| DNA-binding protein HU [Streptococcus pneumoniae G54] gi|221231850|ref|YP_002511002.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669] gi|225854609|ref|YP_002736121.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae JJA] gi|225856753|ref|YP_002738264.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae P1031] gi|225858923|ref|YP_002740433.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae 70585] gi|225861076|ref|YP_002742585.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Taiwan19F-14] gi|237650781|ref|ZP_04525033.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CCRI 1974] gi|237822369|ref|ZP_04598214.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CCRI 1974M2] gi|298229872|ref|ZP_06963553.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254158|ref|ZP_06977744.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502870|ref|YP_003724810.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A] gi|303254179|ref|ZP_07340291.1| DNA-binding protein HU [Streptococcus pneumoniae BS455] gi|303259776|ref|ZP_07345751.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293] gi|303262951|ref|ZP_07348886.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292] gi|303264913|ref|ZP_07350829.1| DNA-binding protein HU [Streptococcus pneumoniae BS397] gi|303266894|ref|ZP_07352772.1| DNA-binding protein HU [Streptococcus pneumoniae BS457] gi|303268930|ref|ZP_07354715.1| DNA-binding protein HU [Streptococcus pneumoniae BS458] gi|307067705|ref|YP_003876671.1| nucleoid DNA-binding protein [Streptococcus pneumoniae AP200] gi|307127356|ref|YP_003879387.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B] gi|14972589|gb|AAK75224.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4] gi|15458637|gb|AAK99824.1| Histone-like DNA-binding protein [Streptococcus pneumoniae R6] gi|116076781|gb|ABJ54501.1| DNA-binding protein HU [Streptococcus pneumoniae D39] gi|147755780|gb|EDK62825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70] gi|147758214|gb|EDK65216.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69] gi|147761987|gb|EDK68949.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74] gi|147763180|gb|EDK70120.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75] gi|147922784|gb|EDK73901.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71] gi|147925380|gb|EDK76458.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73] gi|147927156|gb|EDK78193.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68] gi|147929538|gb|EDK80532.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72] gi|172043527|gb|EDT51573.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1873-00] gi|182629472|gb|ACB90420.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14] gi|183570502|gb|EDT91030.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1087-00] gi|183572358|gb|EDT92886.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae SP195] gi|183573808|gb|EDT94336.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC0288-04] gi|183576766|gb|EDT97294.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC3059-06] gi|183577917|gb|EDT98445.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae MLV-016] gi|194357540|gb|ACF55988.1| DNA-binding protein HU [Streptococcus pneumoniae G54] gi|220674310|emb|CAR68853.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669] gi|225721544|gb|ACO17398.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae 70585] gi|225723096|gb|ACO18949.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae JJA] gi|225724771|gb|ACO20623.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae P1031] gi|225727077|gb|ACO22928.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Taiwan19F-14] gi|298238465|gb|ADI69596.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A] gi|301794226|emb|CBW36646.1| DNA-binding protein HU [Streptococcus pneumoniae INV104] gi|301800078|emb|CBW32675.1| DNA-binding protein HU [Streptococcus pneumoniae OXC141] gi|301801998|emb|CBW34727.1| DNA-binding protein HU [Streptococcus pneumoniae INV200] gi|302598850|gb|EFL65884.1| DNA-binding protein HU [Streptococcus pneumoniae BS455] gi|302635928|gb|EFL66428.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292] gi|302638981|gb|EFL69441.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293] gi|302641548|gb|EFL71910.1| DNA-binding protein HU [Streptococcus pneumoniae BS458] gi|302643592|gb|EFL73861.1| DNA-binding protein HU [Streptococcus pneumoniae BS457] gi|302645601|gb|EFL75832.1| DNA-binding protein HU [Streptococcus pneumoniae BS397] gi|306409242|gb|ADM84669.1| Bacterial nucleoid DNA-binding protein [Streptococcus pneumoniae AP200] gi|306484418|gb|ADM91287.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B] gi|315419703|gb|ADU15821.1| histone-like protein [Streptococcus pseudopneumoniae] gi|327389329|gb|EGE87674.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA04375] gi|332073475|gb|EGI83954.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA17570] gi|332075067|gb|EGI85538.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA17545] gi|332075447|gb|EGI85916.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA41301] gi|332200509|gb|EGJ14581.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA41317] gi|332201601|gb|EGJ15671.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA47368] gi|332202970|gb|EGJ17038.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA47901] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAERKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEMTIAASKVPAFKAGKALK 87 >gi|257074499|ref|YP_003162896.1| integration host factor, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048720|gb|ACV37905.1| integration host factor, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 95 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ I ++ L+ KD V +F + ++ GE I+I F +F + + R+ Sbjct: 1 MTRSELIAQITARSAALTVKDVETAVKAIFEGMTETLANGERIEIRGFGSFRLAYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T V + + V FKA L R+ D Sbjct: 61 GRNPMTGDTVPVPAKAVPHFKAGRELAARVNSD 93 >gi|237809330|ref|YP_002893770.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] gi|237501591|gb|ACQ94184.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + +S+ + + + I S G+ +++ F TF V + SR G Sbjct: 1 MNKTELVDAIAAKADMSKAQAKVALEQILETITQSLKEGDPVQLVGFGTFKVNHRASRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT QE+ I V F A LK + Sbjct: 61 RNPQTGQEITIAASNVPTFVAGKALKDAV 89 >gi|254423790|ref|ZP_05037508.1| DNA-binding protein HU [Synechococcus sp. PCC 7335] gi|196191279|gb|EDX86243.1| DNA-binding protein HU [Synechococcus sp. PCC 7335] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +S+KD+ +T + + I +S +G+ + + F +F + + +R G Sbjct: 1 MNKAELIDMVAEKADVSKKDADVVLTAVIDSIMESVAKGDKVSLVGFGSFEPRDRKARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI V F A K+ + D Sbjct: 61 RNPQTGETIKIPATTVPAFSAGKGFKQLVAD 91 >gi|281357086|ref|ZP_06243576.1| histone family protein DNA-binding protein [Victivallis vadensis ATCC BAA-548] gi|281316644|gb|EFB00668.1| histone family protein DNA-binding protein [Victivallis vadensis ATCC BAA-548] Length = 99 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DLV I++E G + D V + I + G I++ +F F +K + SR G Sbjct: 1 MTKRDLVVKIARETGFIQNDVAEVVQKTLDYIAQDLIEGHTIELRNFGVFEIKVRKSRKG 60 Query: 65 RNL-QTNQEVKIDPRRVVVFKASSILKKRI 93 RN Q EV I R VV F+A LK+ + Sbjct: 61 RNPNQPKNEVIIPERAVVKFRAGKELKEAV 90 >gi|29346322|ref|NP_809825.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|253568257|ref|ZP_04845668.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298385676|ref|ZP_06995234.1| HimA protein [Bacteroides sp. 1_1_14] gi|29338217|gb|AAO76019.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|251842330|gb|EES70410.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298261817|gb|EFI04683.1| HimA protein [Bacteroides sp. 1_1_14] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 45/84 (53%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + ++ G + KD++ +++L +++ G AI I F +F VK+K R+ N Sbjct: 5 EFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERISINPS 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 T Q + + P+ V+ ++ S+ LK + Sbjct: 65 TKQRMLVPPKLVLTYRPSNTLKDK 88 >gi|95930236|ref|ZP_01312974.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95133699|gb|EAT15360.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++S E L+ K + V +F+ + V+G I+I F +F VK S G Sbjct: 1 MNKSELIEALSLEKDLTYKRAEEIVNLMFDSMTQELVKGGRIEIRGFGSFVVKDYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ +++ FK L++R+ Sbjct: 61 RNPKTGEAIQVKTKKLPFFKVGKELRERV 89 >gi|315186666|gb|EFU20425.1| histone family protein DNA-binding protein [Spirochaeta thermophila DSM 6578] Length = 102 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKG 60 ++ +T++ +V++IS+ LS+KD + + F+E+ + V G+ +++ F TF ++ +KG Sbjct: 5 TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VK++ V VF+ LK + + Sbjct: 65 RERARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99 >gi|299135036|ref|ZP_07028227.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2] gi|298590013|gb|EFI50217.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2] Length = 99 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + +T + +I +GE I+I V+++ +R+ Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDMVTKITKHLKKGERIRIVGLGILQVRKRAARM 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + + I + V F+A+ LK+ + Sbjct: 70 GRNPATGEAIHIKASKKVAFRAAKELKEAV 99 >gi|254427198|ref|ZP_05040905.1| DNA-binding protein HU [Alcanivorax sp. DG881] gi|196193367|gb|EDX88326.1| DNA-binding protein HU [Alcanivorax sp. DG881] Length = 85 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 46/84 (54%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ +I+ +S+ D+ R + + + + +G+++ + F TF VK++ +R GRN QT Sbjct: 1 MIDAIAASADISKADAGRALDSTLEAVTGALKKGDSVSLVGFGTFAVKRREARDGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 Q +KI V FKA LK + Sbjct: 61 GQTIKIAAANVPGFKAGKALKDAV 84 >gi|163782099|ref|ZP_02177098.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1] gi|159882631|gb|EDP76136.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1] Length = 100 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 39/60 (65%) Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 + V+ +F I ++ GE ++IS F TF VK + ++GRN +T +EV + R+V+VFK S Sbjct: 27 QIVSEVFEIIEETLKNGEKVQISGFGTFLVKTRKGKIGRNPRTGEEVPVPDRKVIVFKPS 86 >gi|149192496|ref|ZP_01870681.1| DNA-binding protein HU-beta [Vibrio shilonii AK1] gi|148833669|gb|EDL50721.1| DNA-binding protein HU-beta [Vibrio shilonii AK1] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDAFIEAVSTTLEEGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQISEAKVPAFKAGKALK 86 >gi|299133339|ref|ZP_07026534.1| integration host factor, beta subunit [Afipia sp. 1NLS2] gi|298593476|gb|EFI53676.1| integration host factor, beta subunit [Afipia sp. 1NLS2] Length = 103 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALSRGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK +++R+ Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERL 90 >gi|15800170|ref|NP_286182.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 EDL933] gi|15829748|ref|NP_308521.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16128425|ref|NP_414974.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|24111824|ref|NP_706334.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a str. 301] gi|26246451|ref|NP_752490.1| transcriptional regulator HU subunit beta [Escherichia coli CFT073] gi|30061942|ref|NP_836113.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a str. 2457T] gi|74311015|ref|YP_309434.1| transcriptional regulator HU subunit beta [Shigella sonnei Ss046] gi|82542928|ref|YP_406875.1| transcriptional regulator HU subunit beta [Shigella boydii Sb227] gi|82775653|ref|YP_402000.1| transcriptional regulator HU subunit beta [Shigella dysenteriae Sd197] gi|89107310|ref|AP_001090.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|91209514|ref|YP_539500.1| transcriptional regulator HU subunit beta [Escherichia coli UTI89] gi|110640701|ref|YP_668429.1| transcriptional regulator HU subunit beta [Escherichia coli 536] gi|110804468|ref|YP_687988.1| transcriptional regulator HU subunit beta [Shigella flexneri 5 str. 8401] gi|117622700|ref|YP_851613.1| transcriptional regulator HU subunit beta [Escherichia coli APEC O1] gi|157158595|ref|YP_001461627.1| transcriptional regulator HU subunit beta [Escherichia coli E24377A] gi|157159967|ref|YP_001457285.1| transcriptional regulator HU subunit beta [Escherichia coli HS] gi|168747884|ref|ZP_02772906.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4113] gi|168754545|ref|ZP_02779552.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4401] gi|168760405|ref|ZP_02785412.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4501] gi|168768395|ref|ZP_02793402.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4486] gi|168777136|ref|ZP_02802143.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4196] gi|168778933|ref|ZP_02803940.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4076] gi|168786291|ref|ZP_02811298.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869] gi|168798004|ref|ZP_02823011.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508] gi|170021187|ref|YP_001726141.1| transcriptional regulator HU subunit beta [Escherichia coli ATCC 8739] gi|170080026|ref|YP_001729346.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170681712|ref|YP_001742584.1| transcriptional regulator HU subunit beta [Escherichia coli SMS-3-5] gi|170767837|ref|ZP_02902290.1| DNA-binding protein HU-beta [Escherichia albertii TW07627] gi|187732111|ref|YP_001879151.1| transcriptional regulator HU subunit beta [Shigella boydii CDC 3083-94] gi|188494441|ref|ZP_03001711.1| DNA-binding protein HU-beta [Escherichia coli 53638] gi|191169609|ref|ZP_03031324.1| DNA-binding protein HU-beta [Escherichia coli B7A] gi|191173656|ref|ZP_03035180.1| DNA-binding protein HU-beta [Escherichia coli F11] gi|193064118|ref|ZP_03045202.1| DNA-binding protein HU-beta [Escherichia coli E22] gi|193067526|ref|ZP_03048493.1| DNA-binding protein HU-beta [Escherichia coli E110019] gi|194429030|ref|ZP_03061562.1| DNA-binding protein HU-beta [Escherichia coli B171] gi|194435314|ref|ZP_03067526.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012] gi|194437413|ref|ZP_03069510.1| DNA-binding protein HU-beta [Escherichia coli 101-1] gi|208807585|ref|ZP_03249922.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4206] gi|208815532|ref|ZP_03256711.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4045] gi|208823271|ref|ZP_03263589.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4042] gi|209399224|ref|YP_002269087.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4115] gi|209917657|ref|YP_002291741.1| transcriptional regulator HU subunit beta [Escherichia coli SE11] gi|215485521|ref|YP_002327952.1| transcriptional regulator HU subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|217324840|ref|ZP_03440924.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. TW14588] gi|218549892|ref|YP_002383683.1| transcriptional regulator HU subunit beta [Escherichia fergusonii ATCC 35469] gi|218553007|ref|YP_002385920.1| transcriptional regulator HU subunit beta [Escherichia coli IAI1] gi|218557350|ref|YP_002390263.1| transcriptional regulator HU subunit beta [Escherichia coli S88] gi|218688304|ref|YP_002396516.1| transcriptional regulator HU subunit beta [Escherichia coli ED1a] gi|218693903|ref|YP_002401570.1| transcriptional regulator HU subunit beta [Escherichia coli 55989] gi|218698648|ref|YP_002406277.1| transcriptional regulator HU subunit beta [Escherichia coli IAI39] gi|218703724|ref|YP_002411243.1| transcriptional regulator HU subunit beta [Escherichia coli UMN026] gi|227884549|ref|ZP_04002354.1| DNA-binding protein HU [Escherichia coli 83972] gi|237707565|ref|ZP_04538046.1| transcriptional regulator HU subunit beta [Escherichia sp. 3_2_53FAA] gi|238899728|ref|YP_002925524.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli BW2952] gi|253774569|ref|YP_003037400.1| transcriptional regulator HU subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160510|ref|YP_003043618.1| transcriptional regulator HU subunit beta [Escherichia coli B str. REL606] gi|254791624|ref|YP_003076461.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256020412|ref|ZP_05434277.1| transcriptional regulator HU subunit beta [Shigella sp. D9] gi|256023941|ref|ZP_05437806.1| transcriptional regulator HU subunit beta [Escherichia sp. 4_1_40B] gi|260842641|ref|YP_003220419.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260853663|ref|YP_003227554.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260866601|ref|YP_003233003.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O111:H- str. 11128] gi|261223923|ref|ZP_05938204.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. FRIK2000] gi|261256363|ref|ZP_05948896.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. FRIK966] gi|291281347|ref|YP_003498165.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615] gi|293403561|ref|ZP_06647652.1| transcriptional regulator HU subunit alpha [Escherichia coli FVEC1412] gi|293408590|ref|ZP_06652429.1| conserved hypothetical protein [Escherichia coli B354] gi|293413695|ref|ZP_06656344.1| DNA-binding protein HU-beta [Escherichia coli B185] gi|293418511|ref|ZP_06660946.1| transcriptional regulator HU subunit alpha [Escherichia coli B088] gi|298379173|ref|ZP_06989054.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302] gi|300818228|ref|ZP_07098439.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300820314|ref|ZP_07100466.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300900511|ref|ZP_07118678.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300903292|ref|ZP_07121220.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300918177|ref|ZP_07134784.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300924167|ref|ZP_07140159.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300930257|ref|ZP_07145670.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300937057|ref|ZP_07151923.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300947907|ref|ZP_07162055.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300958008|ref|ZP_07170172.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300988005|ref|ZP_07178485.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300997371|ref|ZP_07181711.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|301022566|ref|ZP_07186438.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|301025664|ref|ZP_07189182.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|301049647|ref|ZP_07196596.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|301301591|ref|ZP_07207726.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|301330693|ref|ZP_07223295.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301647366|ref|ZP_07247178.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|306813092|ref|ZP_07447285.1| transcriptional regulator HU subunit beta [Escherichia coli NC101] gi|307137085|ref|ZP_07496441.1| transcriptional regulator HU subunit beta [Escherichia coli H736] gi|307312182|ref|ZP_07591818.1| histone family protein DNA-binding protein [Escherichia coli W] gi|309794827|ref|ZP_07689248.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|312964535|ref|ZP_07778791.1| DNA-binding protein HU-beta [Escherichia coli 2362-75] gi|312970537|ref|ZP_07784718.1| DNA-binding protein HU-beta [Escherichia coli 1827-70] gi|331640960|ref|ZP_08342095.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736] gi|331645616|ref|ZP_08346720.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605] gi|331651378|ref|ZP_08352403.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718] gi|331656497|ref|ZP_08357459.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206] gi|331661821|ref|ZP_08362744.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143] gi|331666796|ref|ZP_08367670.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271] gi|331676112|ref|ZP_08376824.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591] gi|331681835|ref|ZP_08382468.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299] gi|332281591|ref|ZP_08394004.1| transcriptional regulator HU subunit beta [Shigella sp. D9] gi|82581654|sp|P0ACF6|DBHB_ECO57 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|82581655|sp|P0ACF5|DBHB_ECOL6 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|82581656|sp|P0ACF4|DBHB_ECOLI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|82581657|sp|P0ACF7|DBHB_SHIFL RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|134105079|pdb|2O97|B Chain B, Crystal Structure Of E. Coli Hu Heterodimer gi|12513302|gb|AAG54790.1|AE005223_5 DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli O157:H7 str. EDL933] gi|26106849|gb|AAN79034.1|AE016756_217 DNA-binding protein HU-beta [Escherichia coli CFT073] gi|581106|emb|CAA34539.1| unnamed protein product [Escherichia coli K-12] gi|1773124|gb|AAB40196.1| DNA-binding protein NS1 [Escherichia coli] gi|1786644|gb|AAC73543.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13359951|dbj|BAB33917.1| DNA-binding protein HU-1 [Escherichia coli O157:H7 str. Sakai] gi|24050616|gb|AAN42041.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a str. 301] gi|30040186|gb|AAP15919.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a str. 2457T] gi|73854492|gb|AAZ87199.1| DNA-binding protein HU-beta [Shigella sonnei Ss046] gi|81239801|gb|ABB60511.1| DNA-binding protein HU-beta [Shigella dysenteriae Sd197] gi|81244339|gb|ABB65047.1| DNA-binding protein HU-beta [Shigella boydii Sb227] gi|85674580|dbj|BAE76220.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K12 substr. W3110] gi|91071088|gb|ABE05969.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli UTI89] gi|110342293|gb|ABG68530.1| DNA-binding protein HU-beta [Escherichia coli 536] gi|110614016|gb|ABF02683.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 5 str. 8401] gi|115511824|gb|ABI99898.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli APEC O1] gi|157065647|gb|ABV04902.1| DNA-binding protein HU-beta [Escherichia coli HS] gi|157080625|gb|ABV20333.1| DNA-binding protein HU-beta [Escherichia coli E24377A] gi|169756115|gb|ACA78814.1| histone family protein DNA-binding protein [Escherichia coli ATCC 8739] gi|169887861|gb|ACB01568.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170123325|gb|EDS92256.1| DNA-binding protein HU-beta [Escherichia albertii TW07627] gi|170519430|gb|ACB17608.1| DNA-binding protein HU-beta [Escherichia coli SMS-3-5] gi|187429103|gb|ACD08377.1| DNA-binding protein HU-beta [Shigella boydii CDC 3083-94] gi|187767567|gb|EDU31411.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4196] gi|188017725|gb|EDU55847.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4113] gi|188489640|gb|EDU64743.1| DNA-binding protein HU-beta [Escherichia coli 53638] gi|189002751|gb|EDU71737.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4076] gi|189357994|gb|EDU76413.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4401] gi|189362520|gb|EDU80939.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4486] gi|189369140|gb|EDU87556.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4501] gi|189373754|gb|EDU92170.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869] gi|189379306|gb|EDU97722.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508] gi|190900350|gb|EDV60184.1| DNA-binding protein HU-beta [Escherichia coli B7A] gi|190906014|gb|EDV65629.1| DNA-binding protein HU-beta [Escherichia coli F11] gi|192929147|gb|EDV82757.1| DNA-binding protein HU-beta [Escherichia coli E22] gi|192958938|gb|EDV89374.1| DNA-binding protein HU-beta [Escherichia coli E110019] gi|194412967|gb|EDX29257.1| DNA-binding protein HU-beta [Escherichia coli B171] gi|194416446|gb|EDX32603.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012] gi|194423582|gb|EDX39572.1| DNA-binding protein HU-beta [Escherichia coli 101-1] gi|208727386|gb|EDZ76987.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4206] gi|208732180|gb|EDZ80868.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4045] gi|208737464|gb|EDZ85148.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4042] gi|209160624|gb|ACI38057.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4115] gi|209743824|gb|ACI70219.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743826|gb|ACI70220.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743828|gb|ACI70221.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743830|gb|ACI70222.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743832|gb|ACI70223.1| DNA-binding protein HU-1 [Escherichia coli] gi|209910916|dbj|BAG75990.1| DNA-binding protein HU-beta [Escherichia coli SE11] gi|215263593|emb|CAS07923.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321061|gb|EEC29485.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. TW14588] gi|218350635|emb|CAU96327.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli 55989] gi|218357433|emb|CAQ90072.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia fergusonii ATCC 35469] gi|218359775|emb|CAQ97316.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli IAI1] gi|218364119|emb|CAR01784.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli S88] gi|218368634|emb|CAR16373.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli IAI39] gi|218425868|emb|CAR06674.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli ED1a] gi|218430821|emb|CAR11695.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli UMN026] gi|222032235|emb|CAP74974.1| DNA-binding protein HU-beta [Escherichia coli LF82] gi|226898775|gb|EEH85034.1| transcriptional regulator HU subunit beta [Escherichia sp. 3_2_53FAA] gi|227838635|gb|EEJ49101.1| DNA-binding protein HU [Escherichia coli 83972] gi|238861438|gb|ACR63436.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli BW2952] gi|242376222|emb|CAQ30913.1| transcriptional dual regulator HU-beta, NS1 (HU-1), subunit of HU transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325613|gb|ACT30215.1| histone family protein DNA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972411|gb|ACT38082.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli B str. REL606] gi|253976621|gb|ACT42291.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli BL21(DE3)] gi|254591024|gb|ACT70385.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257752312|dbj|BAI23814.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257757788|dbj|BAI29285.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257762957|dbj|BAI34452.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O111:H- str. 11128] gi|260450373|gb|ACX40795.1| histone family protein DNA-binding protein [Escherichia coli DH1] gi|281177611|dbj|BAI53941.1| DNA-binding protein HU-beta [Escherichia coli SE15] gi|281599780|gb|ADA72764.1| DNA-binding protein HU-beta [Shigella flexneri 2002017] gi|284920250|emb|CBG33309.1| DNA-binding protein HU-beta [Escherichia coli 042] gi|290761220|gb|ADD55181.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615] gi|291325039|gb|EFE64454.1| transcriptional regulator HU subunit alpha [Escherichia coli B088] gi|291429414|gb|EFF02434.1| transcriptional regulator HU subunit alpha [Escherichia coli FVEC1412] gi|291433753|gb|EFF06726.1| DNA-binding protein HU-beta [Escherichia coli B185] gi|291471768|gb|EFF14251.1| conserved hypothetical protein [Escherichia coli B354] gi|294489973|gb|ADE88729.1| DNA-binding protein HU-beta [Escherichia coli IHE3034] gi|298280286|gb|EFI21790.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302] gi|299880018|gb|EFI88229.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|300298584|gb|EFJ54969.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|300304190|gb|EFJ58710.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|300315275|gb|EFJ65059.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300355992|gb|EFJ71862.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300397447|gb|EFJ80985.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|300404587|gb|EFJ88125.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300407557|gb|EFJ91095.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300414628|gb|EFJ97938.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300419620|gb|EFK02931.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300452507|gb|EFK16127.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300457888|gb|EFK21381.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300461829|gb|EFK25322.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300527099|gb|EFK48168.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300529119|gb|EFK50181.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300843088|gb|EFK70848.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|300843354|gb|EFK71114.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301074511|gb|EFK89317.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|305853855|gb|EFM54294.1| transcriptional regulator HU subunit beta [Escherichia coli NC101] gi|306907684|gb|EFN38186.1| histone family protein DNA-binding protein [Escherichia coli W] gi|307552347|gb|ADN45122.1| DNA-binding protein HU [Escherichia coli ABU 83972] gi|307628090|gb|ADN72394.1| transcriptional regulator HU subunit beta [Escherichia coli UM146] gi|308121480|gb|EFO58742.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|309700701|emb|CBI99997.1| DNA-binding protein HU-beta [Escherichia coli ETEC H10407] gi|310337186|gb|EFQ02324.1| DNA-binding protein HU-beta [Escherichia coli 1827-70] gi|312290769|gb|EFR18646.1| DNA-binding protein HU-beta [Escherichia coli 2362-75] gi|312945018|gb|ADR25845.1| transcriptional regulator HU subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313646933|gb|EFS11390.1| DNA-binding protein HU-beta [Shigella flexneri 2a str. 2457T] gi|315059720|gb|ADT74047.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli W] gi|315135122|dbj|BAJ42281.1| DNA-binding protein HU-beta [Escherichia coli DH1] gi|315256268|gb|EFU36236.1| DNA-binding protein HU [Escherichia coli MS 85-1] gi|315289842|gb|EFU49232.1| DNA-binding protein HU [Escherichia coli MS 110-3] gi|315294226|gb|EFU53577.1| DNA-binding protein HU [Escherichia coli MS 153-1] gi|315299564|gb|EFU58812.1| DNA-binding protein HU [Escherichia coli MS 16-3] gi|315616619|gb|EFU97236.1| DNA-binding protein HU-beta [Escherichia coli 3431] gi|320173740|gb|EFW48923.1| DNA-binding protein HU-beta [Shigella dysenteriae CDC 74-1112] gi|320178278|gb|EFW53252.1| DNA-binding protein HU-beta [Shigella boydii ATCC 9905] gi|320186070|gb|EFW60815.1| DNA-binding protein HU-beta [Shigella flexneri CDC 796-83] gi|320192856|gb|EFW67496.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC1212] gi|320197086|gb|EFW71705.1| DNA-binding protein HU-beta [Escherichia coli WV_060327] gi|320201684|gb|EFW76260.1| DNA-binding protein HU-beta [Escherichia coli EC4100B] gi|320638435|gb|EFX08149.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. G5101] gi|320643816|gb|EFX12939.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H- str. 493-89] gi|320649167|gb|EFX17745.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H- str. H 2687] gi|320656060|gb|EFX23976.1| transcriptional regulator HU subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661210|gb|EFX28641.1| transcriptional regulator HU subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320665186|gb|EFX32279.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323153477|gb|EFZ39731.1| DNA-binding protein HU-beta [Escherichia coli EPECa14] gi|323160449|gb|EFZ46397.1| DNA-binding protein HU-beta [Escherichia coli E128010] gi|323164241|gb|EFZ50048.1| DNA-binding protein HU-beta [Shigella sonnei 53G] gi|323170527|gb|EFZ56177.1| DNA-binding protein HU-beta [Escherichia coli LT-68] gi|323178291|gb|EFZ63869.1| DNA-binding protein HU-beta [Escherichia coli 1180] gi|323184729|gb|EFZ70100.1| DNA-binding protein HU-beta [Escherichia coli 1357] gi|323191360|gb|EFZ76623.1| DNA-binding protein HU-beta [Escherichia coli RN587/1] gi|323379715|gb|ADX51983.1| histone family protein DNA-binding protein [Escherichia coli KO11] gi|323938626|gb|EGB34875.1| bacterial DNA-binding protein [Escherichia coli E1520] gi|323943247|gb|EGB39403.1| DNA-binding protein [Escherichia coli E482] gi|323945346|gb|EGB41402.1| bacterial DNA-binding protein [Escherichia coli H120] gi|323952948|gb|EGB48816.1| DNA-binding protein [Escherichia coli H252] gi|323958633|gb|EGB54336.1| DNA-binding protein [Escherichia coli H263] gi|323963430|gb|EGB58992.1| DNA-binding protein [Escherichia coli H489] gi|323965127|gb|EGB60586.1| DNA-binding protein [Escherichia coli M863] gi|323972294|gb|EGB67504.1| DNA-binding protein [Escherichia coli TA007] gi|323976075|gb|EGB71168.1| DNA-binding protein [Escherichia coli TW10509] gi|324010071|gb|EGB79290.1| DNA-binding protein HU [Escherichia coli MS 57-2] gi|324010654|gb|EGB79873.1| DNA-binding protein HU [Escherichia coli MS 60-1] gi|324016699|gb|EGB85918.1| DNA-binding protein HU [Escherichia coli MS 117-3] gi|324114667|gb|EGC08635.1| DNA-binding protein [Escherichia fergusonii B253] gi|324116928|gb|EGC10841.1| DNA-binding protein [Escherichia coli E1167] gi|325498269|gb|EGC96128.1| transcriptional regulator HU subunit beta [Escherichia fergusonii ECD227] gi|326341204|gb|EGD64996.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1044] gi|326346021|gb|EGD69760.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1125] gi|327254768|gb|EGE66384.1| DNA-binding protein HU-beta [Escherichia coli STEC_7v] gi|330910234|gb|EGH38744.1| DNA-binding protein HU-beta [Escherichia coli AA86] gi|331037758|gb|EGI09978.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736] gi|331045778|gb|EGI17904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605] gi|331051119|gb|EGI23171.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718] gi|331054745|gb|EGI26754.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206] gi|331060243|gb|EGI32207.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143] gi|331066020|gb|EGI37904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271] gi|331076170|gb|EGI47452.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591] gi|331081037|gb|EGI52202.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299] gi|332085888|gb|EGI91052.1| DNA-binding protein HU-beta [Shigella dysenteriae 155-74] gi|332094596|gb|EGI99642.1| DNA-binding protein HU-beta [Shigella boydii 5216-82] gi|332098606|gb|EGJ03572.1| DNA-binding protein HU-beta [Shigella boydii 3594-74] gi|332103943|gb|EGJ07289.1| transcriptional regulator HU subunit beta [Shigella sp. D9] gi|332341804|gb|AEE55138.1| transcriptional regulator protein HU, subunit beta HupB [Escherichia coli UMNK88] gi|332761491|gb|EGJ91773.1| DNA-binding protein HU-beta [Shigella flexneri 2747-71] gi|332763739|gb|EGJ93977.1| DNA-binding protein HU-beta [Shigella flexneri K-671] gi|333007920|gb|EGK27396.1| DNA-binding protein HU-beta [Shigella flexneri K-218] gi|333008126|gb|EGK27601.1| DNA-binding protein HU-beta [Shigella flexneri VA-6] gi|333010901|gb|EGK30327.1| DNA-binding protein HU-beta [Shigella flexneri K-272] gi|333020703|gb|EGK39963.1| DNA-binding protein HU-beta [Shigella flexneri K-227] gi|333021963|gb|EGK41211.1| DNA-binding protein HU-beta [Shigella flexneri K-304] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAV 89 >gi|269102460|ref|ZP_06155157.1| integration host factor alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162358|gb|EEZ40854.1| integration host factor alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 72 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + F E+ + GE +K+S F F ++ K R GRN +T +++ I RRVV F+ Sbjct: 1 MEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVTFRPGQK 60 Query: 89 LKKRI 93 LK R+ Sbjct: 61 LKARV 65 >gi|157146943|ref|YP_001454262.1| transcriptional regulator HU subunit beta [Citrobacter koseri ATCC BAA-895] gi|237730417|ref|ZP_04560898.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2] gi|283834241|ref|ZP_06353982.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] gi|157084148|gb|ABV13826.1| hypothetical protein CKO_02720 [Citrobacter koseri ATCC BAA-895] gi|226905956|gb|EEH91874.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2] gi|291069760|gb|EFE07869.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89 >gi|150388012|ref|YP_001318061.1| histone family protein DNA-binding protein [Alkaliphilus metalliredigens QYMF] gi|149947874|gb|ABR46402.1| histone family protein DNA-binding protein [Alkaliphilus metalliredigens QYMF] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++++ L++KD+ + + + ++ V G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + ++V +I + VFKA LK++I Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKI 90 >gi|237709945|ref|ZP_04540426.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|229456038|gb|EEO61759.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + +S+ G + KD+++ V+++ + G I I F TF VK+K R+ N Sbjct: 5 EFISELSRRLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERISINPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 T Q + I P+ V+ +K S LK++ Sbjct: 65 TQQRMLIPPKLVLTYKPSVTLKEK 88 >gi|116748869|ref|YP_845556.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116697933|gb|ABK17121.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++ G+++ + + + L + + +G+ I + F TF V ++ R G Sbjct: 1 MTKADLVIKMADGTGITKAAAEKALNNLIAAVSAALAKGDKITLVGFGTFDVAKRAKREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q + I +VV FKA + L+ I Sbjct: 61 RNPRTGQAITIPASKVVRFKAGNKLRDAI 89 >gi|120553956|ref|YP_958307.1| integration host factor subunit beta [Marinobacter aquaeolei VT8] gi|166918554|sp|A1TZF1|IHFB_MARAV RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|120323805|gb|ABM18120.1| integration host factor, beta subunit [Marinobacter aquaeolei VT8] Length = 98 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I SK+ LS KD V ++ + S G+ I+I F +F + + +R Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKSIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V++ + V FK L++++ D M+ Sbjct: 61 GRNPKTGDAVQLPAKFVPHFKPGKELREQVNDSMK 95 >gi|157963543|ref|YP_001503577.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] gi|157848543|gb|ABV89042.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ G+ I I F +F Q+ +R G Sbjct: 1 MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGDKISIVGFGSFETTQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86 >gi|61658219|gb|AAX49386.1| DNA-binding protein HU [Aeromonas hydrophila] Length = 98 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +I+ + LS+ + + + N I S G A+++ F TF V + R G Sbjct: 9 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGGAVQLVGFGTFKVNHRAGRTG 68 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I V F A LK + Sbjct: 69 RNPQTGKEIQIAAANVPSFVAGKALKDAV 97 >gi|163846249|ref|YP_001634293.1| histone family protein DNA-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222524004|ref|YP_002568474.1| histone family protein DNA-binding protein [Chloroflexus sp. Y-400-fl] gi|163667538|gb|ABY33904.1| histone family protein DNA-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222447883|gb|ACM52149.1| histone family protein DNA-binding protein [Chloroflexus sp. Y-400-fl] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ +S+K++ + I ++ RGE + ++ F TF V+ + +R G Sbjct: 1 MQKTDFIKAVAERAKVSQKETKLIIDAALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT +++ I + F ASS LK+ + Sbjct: 61 VNPQTREKMHIPATKTPGFSASSTLKEAV 89 >gi|297538803|ref|YP_003674572.1| integration host factor subunit beta [Methylotenera sp. 301] gi|297258150|gb|ADI29995.1| integration host factor, beta subunit [Methylotenera sp. 301] Length = 93 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ GE I+I F +F + + R+ Sbjct: 1 MTKSELITLLAERFPQLVVKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FKA L++R+ Sbjct: 61 GRNPKTGSKVQVPEKHVPHFKAGKELRERV 90 >gi|302384103|ref|YP_003819926.1| histone family protein DNA-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302194731|gb|ADL02303.1| histone family protein DNA-binding protein [Brevundimonas subvibrioides ATCC 15264] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ +++K+ G+S+ D+ R + I S + G ++IS+ F + +R GR Sbjct: 3 TQAELIAAVAKDAGVSQADAGRVLEAFVKNIHSSLIAGGDVRISNLGVFDTAARAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +KI + V F+ S LK + Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAV 90 >gi|254456178|ref|ZP_05069607.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter sp. HTCC7211] gi|207083180|gb|EDZ60606.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter sp. HTCC7211] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +S +S+ D+ R T+ N I D+ +++KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLIAQLSGSLNMSKADAERTFDTITNTILDALKGDDSVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87 >gi|291614260|ref|YP_003524417.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291584372|gb|ADE12030.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDL+++I+K +S+ + R + I S +GE + + F TF+V ++ +R GRN Sbjct: 4 KSDLIEAIAKSADISKAAAGRALDATIESIKKSLKKGELVSLVGFGTFYVGKRAARNGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 +T +KI +V F+A LK Sbjct: 64 PRTGATIKIKAAKVPKFRAGKGLK 87 >gi|329890586|ref|ZP_08268929.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568] gi|328845887|gb|EGF95451.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 48/88 (54%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ +++K+ G+S+ D+ + +T + I S G ++IS+ F ++ R GR Sbjct: 3 TQAELIAAVAKDAGVSQADAGKVLTAIVENIHKSLKSGGDVRISNLGVFDTAERAEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +KI + V F+ S LK + Sbjct: 63 NPATGATIKIPASKAVRFRVSKPLKDAV 90 >gi|241758757|ref|ZP_04756870.1| DNA-binding protein HU-beta [Neisseria flavescens SK114] gi|261380122|ref|ZP_05984695.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703] gi|319638329|ref|ZP_07993092.1| DNA-binding protein HU-beta [Neisseria mucosa C102] gi|241320965|gb|EER57178.1| DNA-binding protein HU-beta [Neisseria flavescens SK114] gi|284796958|gb|EFC52305.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703] gi|317400602|gb|EFV81260.1| DNA-binding protein HU-beta [Neisseria mucosa C102] Length = 89 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86 >gi|296314009|ref|ZP_06863950.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] gi|296839379|gb|EFH23317.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] Length = 91 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E L+++D+ FV + + + G+ + + F +FH Q R G Sbjct: 1 MNKSELIQAIADEAELNKRDAAEFVDAFVSVVTQTLKDGKDVTLVGFGSFHAAQSAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I R+ F A LK + Sbjct: 61 RNPKTGEPLIIAARKTPKFHAGKALKDAV 89 >gi|225025737|ref|ZP_03714929.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC 23834] gi|224941518|gb|EEG22727.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC 23834] Length = 100 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEF---GLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++++ G SR KD + V L + + + RG+ I+I F +F + Sbjct: 1 MTKSELMAHLAEKYLAQGHSRLAVKDVEQSVKVLVDAMTRALARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T ++V + + V FKA L++R+ Sbjct: 61 RPARIGRNPKTGEKVNVPEKYVPHFKAGKELRERV 95 >gi|150020327|ref|YP_001305681.1| histone family protein DNA-binding protein [Thermosipho melanesiensis BI429] gi|149792848|gb|ABR30296.1| histone family protein DNA-binding protein [Thermosipho melanesiensis BI429] Length = 92 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +++ +LV ++++ L +KD + +F I D+ GE +++ F TF V++ R Sbjct: 1 MSKKELVNMVAEKMPELKKKDIKAVIDAVFEAISDALANGERVQLIGFGTFEVRKAEERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N +T +++KI R+V FK LK+++ Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKV 90 >gi|146310568|ref|YP_001175642.1| transcriptional regulator HU subunit beta [Enterobacter sp. 638] gi|145317444|gb|ABP59591.1| bacterial nucleoid protein HU beta subunit [Enterobacter sp. 638] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDALIASVTETLQSGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAV 89 >gi|332523074|ref|ZP_08399326.1| DNA-binding protein HU-beta [Streptococcus porcinus str. Jelinkova 176] gi|332314338|gb|EGJ27323.1| DNA-binding protein HU-beta [Streptococcus porcinus str. Jelinkova 176] Length = 91 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N QT E++I +V FKA LK Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALK 87 >gi|209885048|ref|YP_002288905.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5] gi|209873244|gb|ACI93040.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5] Length = 99 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + +T L ++ +G+ I+I V+++ +R+ Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDLVTKVTKHLKKGDRIRIVGLGILQVRKRAARM 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + + I + V F+AS LK+ I Sbjct: 70 GRNPATGEAIHIKASKKVAFRASKELKEAI 99 >gi|225850916|ref|YP_002731150.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] gi|225645576|gb|ACO03762.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] Length = 96 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59 +T++++V+ I +K +S+KD + V +F +I V GE ++IS F TF VK++ Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 ++GRN +T +E I R + FKA LK+ + Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94 >gi|313667657|ref|YP_004047941.1| dna-binding protein HU-beta 2 [Neisseria lactamica ST-640] gi|313005119|emb|CBN86551.1| dna-binding protein HU-beta 2 [Neisseria lactamica 020-06] Length = 91 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E LS+ D+ FV + + + G+ + + F +FH Q R G Sbjct: 1 MNKSELIQAIADEAELSKLDAAAFVDAFVSVVTQAMKDGKDVTLVGFGSFHTAQSAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I R+ F+A LK + Sbjct: 61 RNPKTGEPLIIAARKTPKFRAGKALKDAV 89 >gi|298345223|ref|YP_003717910.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063] gi|304390783|ref|ZP_07372735.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655645|ref|ZP_07908543.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333] gi|315656440|ref|ZP_07909329.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235284|gb|ADI66416.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063] gi|304325666|gb|EFL92912.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315489709|gb|EFU79336.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333] gi|315492999|gb|EFU82601.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 94 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I+K+ GLS+ ++ ++ + DS +GE +K++ + +R Sbjct: 2 SVNRTELVAEIAKKAGLSKTEADGALSAFQEILIDSLKKGETVKVTGLMNVERVSRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAV 91 >gi|94309668|ref|YP_582878.1| integration host factor subunit beta [Cupriavidus metallidurans CH34] gi|123383988|sp|Q1LQG7|IHFB_RALME RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|93353520|gb|ABF07609.1| integration host factor beta subunit [Cupriavidus metallidurans CH34] Length = 135 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + ++ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + +RV FKA L++R+ Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90 >gi|322834043|ref|YP_004214070.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] gi|321169244|gb|ADW74943.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRVLDAVLASVTDTLKAGDEVALVGFGTFSVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIAAAKVPGFRAGKALKDAV 89 >gi|256820307|ref|YP_003141586.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|315223334|ref|ZP_07865193.1| integration host factor subunit alpha [Capnocytophaga ochracea F0287] gi|256581890|gb|ACU93025.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|314946665|gb|EFS98654.1| integration host factor subunit alpha [Capnocytophaga ochracea F0287] Length = 104 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + GL + D V NE+ ++ G+ + + F +F +K + + G Sbjct: 1 MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVF 85 >gi|70724919|ref|YP_257126.1| hypothetical protein pSG3GP_17 [Sodalis glossinidius] gi|68697150|emb|CAI59408.1| hypothetical protein pSG3.17 [Sodalis glossinidius] Length = 90 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++++S++ +S+ + + + + + S G+ +KI+ F TF VK + R G Sbjct: 1 MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RV F+A LK+ + Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89 >gi|94968214|ref|YP_590262.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|94550264|gb|ABF40188.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 107 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+ + D++ + + G+++ + V T+F + + RG+ I++ F F+V+ + + Sbjct: 16 SPTVIKLDIINEVVNKTGVTKTKAELAVETVFESMKKALSRGDRIELRGFGVFNVRPRKT 75 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +GRN +T EV I P + V FK L+ Sbjct: 76 GIGRNPRTGAEVNIPPGKAVRFKPGKELQ 104 >gi|90420560|ref|ZP_01228467.1| integration host factor, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335288|gb|EAS49041.1| integration host factor, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 93 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++I+ + L ++D V +F+EI + +++ F F VK + R Sbjct: 1 MIKSELVQAIATRNPHLYQRDVETIVNAIFDEITGALCESNRVELRGFGAFSVKHRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FKA L++R+ D Sbjct: 61 GRNPRTGEAVAVEEKWVPFFKAGKELRERLNAD 93 >gi|224369803|ref|YP_002603967.1| IhfA [Desulfobacterium autotrophicum HRM2] gi|223692520|gb|ACN15803.1| IhfA [Desulfobacterium autotrophicum HRM2] Length = 108 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++ + K +SR S + I ++ +GE + IS F F V +K +R G Sbjct: 3 LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T++E+ + RRV+ FK S L+ I Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLI 91 >gi|291561223|emb|CBL40022.1| Bacterial nucleoid DNA-binding protein [butyrate-producing bacterium SS3/4] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + + + I V+GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEQAELSKKDAEKALKAFTDVIAAELVKGEKVQLVGFGTFEVSEREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T +++ I + FKA LK Sbjct: 61 RNPLTGEKITIAASKNPKFKAGKALK 86 >gi|225027811|ref|ZP_03717003.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353] gi|224954861|gb|EEG36070.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++KD+ + + + + D +GE I+++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAERTELTKKDADQALKAFIDVVGDELSKGEKIQLAGFGTFEVTERAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + I + FKA LK+++ Sbjct: 61 INPRTKETIHIPASKAPKFKAMKSLKEKV 89 >gi|223041461|ref|ZP_03611664.1| integration host factor, alpha chain [Actinobacillus minor 202] gi|240949160|ref|ZP_04753507.1| integration host factor subunit alpha [Actinobacillus minor NM305] gi|223017719|gb|EEF16126.1| integration host factor, alpha chain [Actinobacillus minor 202] gi|240296463|gb|EER47099.1| integration host factor subunit alpha [Actinobacillus minor NM305] Length = 98 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +L +++ ++ G ++ + F+ F EI + GE +K+S F F V++K +R Sbjct: 2 ALTKIELAEALVEKCGFEKRTAKLFIDQFFEEIKRALTTGEEVKLSGFGNFSVREKNARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + RRVVVFKA ++ R+ Sbjct: 62 GRNPKTGESVAVSARRVVVFKAGQKMRDRV 91 >gi|163759320|ref|ZP_02166406.1| histone-like protein [Hoeflea phototrophica DFL-43] gi|162283724|gb|EDQ34009.1| histone-like protein [Hoeflea phototrophica DFL-43] Length = 90 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+S+ D+T V +F I G +++ F F V ++ + G Sbjct: 1 MNKNELVAAVAEKSGISKGDATSAVEAVFETITGELKNGGDVRLIGFGNFTVSRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +EV I R V F A LK Sbjct: 61 RNPQTGKEVDIPARNVPKFSAGKGLK 86 >gi|150014983|ref|YP_001307237.1| histone family protein DNA-binding protein [Clostridium beijerinckii NCIMB 8052] gi|118264|sp|P05385|DBH_CLOPA RecName: Full=DNA-binding protein HU gi|149901448|gb|ABR32281.1| histone family protein DNA-binding protein [Clostridium beijerinckii NCIMB 8052] gi|224155|prf||1011218A protein II,DNA binding Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + L + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I V VFKA K ++ Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89 >gi|302343276|ref|YP_003807805.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301639889|gb|ADK85211.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 101 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ + + L + S V T I +S + + IS F F VK K +R Sbjct: 2 ALTKDHIISEVFERTQLPKSRSREVVETTLEIIKNSLADSDDLLISGFGKFLVKDKRARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT ++K+ R+VVVFK S +L+K + Sbjct: 62 GRNPQTKADMKLRARKVVVFKTSGVLRKHL 91 >gi|163793185|ref|ZP_02187161.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199] gi|159181831|gb|EDP66343.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199] Length = 90 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ GLS+ DS + V +F+EI +G +++ F TF V + + G Sbjct: 1 MNKNELVAAVADSTGLSKADSGKAVDAVFDEITGQLKKGGDVRLVGFGTFSVASRAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++ I + FK LK + Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKGLKDSV 89 >gi|148264197|ref|YP_001230903.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146397697|gb|ABQ26330.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ + GLS K + + +F+ + ++ + G+ I+I F +F VK + G Sbjct: 1 MNKSELIEALATKKGLSYKKAEEIINVIFDSMTNALLDGDRIEIRGFGSFVVKGYQAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKV 89 >gi|325983542|ref|YP_004295944.1| integration host factor, beta subunit [Nitrosomonas sp. AL212] gi|325533061|gb|ADZ27782.1| integration host factor, beta subunit [Nitrosomonas sp. AL212] Length = 96 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ F L KD+ V T+ + + S G+ I+I F +F + + R+ Sbjct: 1 MTKSELITRLAARFPQLVAKDAELSVKTIIDAMAQSLASGQRIEIRGFGSFDLNYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++VK+ + V FKA +++R+ Sbjct: 61 GRNPKSGEKVKVPEKYVPHFKAGKEMRERV 90 >gi|85860306|ref|YP_462508.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85723397|gb|ABC78340.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV++++K G +K + V + + + ++ +GE++ + F TF V ++ +R G Sbjct: 1 MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI ++V F A LK+ + Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >gi|88799151|ref|ZP_01114731.1| probable DNA-binding protein [Reinekea sp. MED297] gi|88778134|gb|EAR09329.1| probable DNA-binding protein [Reinekea sp. MED297] Length = 95 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I++ LS+ + + L ++I S + E++ + F TF + + R G+N Sbjct: 8 KPELAAAIAERADLSKDKAGEVLNVLLDQITQSVAKKESVTLVGFGTFEARSRAKRKGKN 67 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I V FKA LK Sbjct: 68 PQTGAEIEIPASNTVAFKAGKALK 91 >gi|39936018|ref|NP_948294.1| DNA-binding protein HU-alpha [Rhodopseudomonas palustris CGA009] gi|192291674|ref|YP_001992279.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris TIE-1] gi|316933828|ref|YP_004108810.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris DX-1] gi|39649872|emb|CAE28394.1| possible DNA-binding protein hu-alpha (NS2) (HU-2) [Rhodopseudomonas palustris CGA009] gi|192285423|gb|ACF01804.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris TIE-1] gi|315601542|gb|ADU44077.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris DX-1] Length = 103 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + + + I +GE I+I V+++ +R+ Sbjct: 14 TVTLKHLAAALAEEHELSKKQTEAILGDMVTRITKHLKKGERIRIVGLGILQVRKRAARM 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T ++++I + V F+A+ LK+ I Sbjct: 74 GRNPATGEQIQIKASKKVAFRAAKELKEAI 103 >gi|194288914|ref|YP_002004821.1| integration host factor subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193222749|emb|CAQ68752.1| Integration host factor, beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 141 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+LV+ ++ F L +D+ V T+ + + ++ G I+I F +F + ++ R Sbjct: 2 PMTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNRRPPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VGRN ++ + V + +RV FKA L++R+ Sbjct: 62 VGRNPKSGERVLVPEKRVPHFKAGKELRERV 92 >gi|298207122|ref|YP_003715301.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559] gi|83849756|gb|EAP87624.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559] Length = 97 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 50/97 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+ G+ + + V T E+ S GE + + F +F +K++ + G Sbjct: 1 MTKADIVAKIADRIGMEKNEVQATVETFMEEVKTSLEGGENVYLRGFGSFIIKERAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN+ N +KI + FK + + + + +++ +K Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFMEGVKENVSVKK 97 >gi|298528590|ref|ZP_07015994.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512242|gb|EFI36144.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 90 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +V S++++ G+++ D+ + + + + I + G+ + + F TF V ++ R G Sbjct: 1 MNKKQMVDSLAQKSGMTKADAQKALDGVEDIISEQLKNGDQVALPGFGTFTVAERKPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I RV FK LK+ + Sbjct: 61 RNPQTGAEINIPAARVPKFKPGKKLKEAV 89 >gi|209694401|ref|YP_002262329.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238] gi|208008352|emb|CAQ78507.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238] Length = 98 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 48/87 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ +S LV I++ +S+ + R + L + ++ G+ + + F +F V+++ +R Sbjct: 8 TVNKSQLVDQIAENADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFIVRERAART 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + ++I +V FKA LK Sbjct: 68 GRNPKTGEAIEISAAKVPAFKAGKALK 94 >gi|326408175|gb|ADZ65240.1| integration host factor subunit beta [Brucella melitensis M28] gi|326537888|gb|ADZ86103.1| integration host factor, beta subunit [Brucella melitensis M5-90] Length = 94 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I S+ L ++D V +F+EI ++ G +++ SF F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRSFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90 >gi|88810610|ref|ZP_01125867.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231] gi|88792240|gb|EAR23350.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231] Length = 90 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ +++ LS+ ++R V + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIEVVAQSADLSKAAASRAVDAFVTSVTDALKEGDQVTLVGFGTFAVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + FKA LK + Sbjct: 61 RNPRTGESITIPASKTPGFKAGKALKDAV 89 >gi|296313665|ref|ZP_06863606.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] gi|296839808|gb|EFH23746.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] Length = 89 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKVAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86 >gi|282855395|ref|ZP_06264718.1| histone family protein DNA-binding protein [Pyramidobacter piscolens W5455] gi|282586775|gb|EFB92020.1| histone family protein DNA-binding protein [Pyramidobacter piscolens W5455] Length = 112 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ + ++ L + D+ V + + D+ + ++I F TF V+Q+ +R G Sbjct: 1 MTKAELVEFVREKTNLRKVDAANAVAAMLEGVKDTLQKQGKVQIVGFGTFEVRQRSARTG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 RN Q ++ V I ++V VFKA +L++ + Sbjct: 61 RNPQDPSKTVHIPAKKVPVFKAGKLLREAV 90 >gi|255534616|ref|YP_003094987.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10] gi|255340812|gb|ACU06925.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10] Length = 96 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +IS + G + ++ + V EI S G+ + + F +F +K + ++ G Sbjct: 1 MTKAELVSTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFVIKTRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N ++I + FK S +++ Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKTFVEKV 89 >gi|163788099|ref|ZP_02182545.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Flavobacteriales bacterium ALC-1] gi|159876419|gb|EDP70477.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Flavobacteriales bacterium ALC-1] Length = 90 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ G+++ + + + +L +I S +G + + F ++ V ++ +R G Sbjct: 1 MNKTDLINGMAENAGITKAAAKKALDSLLVDIEGSLQKGNRVSLVGFGSWSVSRRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI + VV FKA S L Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDL 85 >gi|148266417|ref|YP_001233123.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|222056893|ref|YP_002539255.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|146399917|gb|ABQ28550.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|221566182|gb|ACM22154.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 94 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV++++K L++ + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVEAVAKSASLTKGAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V F+ LK Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK 86 >gi|117925353|ref|YP_865970.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609109|gb|ABK44564.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +++++ L ++ + V +FNE+ + +GE +++ F F + + R Sbjct: 1 MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++ + V FK +++R+ Sbjct: 61 RNPKTGKKVNVESKTAVHFKPGLDMRRRV 89 >gi|299144441|ref|ZP_07037521.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518926|gb|EFI42665.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 92 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ L++KD+ + + ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKSELVASIAQKSNLTKKDAEMALNGFLATVEEALAGGEKVQLVGFGTFEVRERKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKK 91 RN + +E +KI + VF+A LK+ Sbjct: 61 RNPRDPKEIIKIPASKAPVFRAGKALKE 88 >gi|194291213|ref|YP_002007120.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] gi|193225048|emb|CAQ71059.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] Length = 92 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + + I D+ +G+ + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|160891545|ref|ZP_02072548.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC 8492] gi|270295354|ref|ZP_06201555.1| DNA-binding protein HU-beta [Bacteroides sp. D20] gi|317478350|ref|ZP_07937514.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|156858952|gb|EDO52383.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC 8492] gi|270274601|gb|EFA20462.1| DNA-binding protein HU-beta [Bacteroides sp. D20] gi|316905509|gb|EFV27299.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 88 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 49/85 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + + + G+ + + F TF V ++G+R+G Sbjct: 1 MNKAELISAMAAESGLSKTDSKKALDAFIASVTKAMKAGDKVSLVGFGTFSVVERGARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++VV FK + L Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGTEL 85 >gi|284928746|ref|YP_003421268.1| nucleoid DNA-binding protein [cyanobacterium UCYN-A] gi|284809205|gb|ADB94910.1| bacterial nucleoid DNA-binding protein [cyanobacterium UCYN-A] Length = 93 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +I+ + L++K++++ + L + I ++ G + + F TF + + R G Sbjct: 1 MNKEDLVNTIAAKTRLTKKETSQILDALTSTIMETVASGNKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N QT Q + I V F A + K ++++ M Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKGKVVESM 93 >gi|113866825|ref|YP_725314.1| integration host factor subunit beta [Ralstonia eutropha H16] gi|113525601|emb|CAJ91946.1| integration host factor beta subunit [Ralstonia eutropha H16] Length = 140 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + ++ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + +RV FKA L++R+ Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90 >gi|218885604|ref|YP_002434925.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756558|gb|ACL07457.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 90 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ + L++ + R + + + D+ + ++ F TF V+ + +R G Sbjct: 1 MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDALAAEGKLTLTGFGTFAVEDRQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+KI +VV F+ LK I Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLKDSI 89 >gi|149369658|ref|ZP_01889510.1| DNA-binding protein HU [unidentified eubacterium SCB49] gi|149357085|gb|EDM45640.1| DNA-binding protein HU [unidentified eubacterium SCB49] Length = 96 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGMEKGDVQATVETFMAEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|227499519|ref|ZP_03929626.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098] gi|227218398|gb|EEI83649.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098] Length = 92 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ + + + +S + G+ +++ F TF V+ + +R G Sbjct: 1 MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLIAGDKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV +I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAV 90 >gi|225174944|ref|ZP_03728941.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225169584|gb|EEG78381.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 84 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D+ +SI+++ + KD+ V L + I +S GEA+K++ F TF ++ R RN Sbjct: 3 KTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAARN 62 Query: 67 LQTNQEVKIDPRRVVVFKA 85 +T + V++ F+A Sbjct: 63 PKTGETVQVPATHYPTFRA 81 >gi|195952487|ref|YP_002120777.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932099|gb|ACG56799.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 102 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 20 LSRKDSTRFVTTLFNEICDSAV--RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 L ++D +R + N + D+ + + I++S F TF++K++ R+GRN +T KI P Sbjct: 21 LKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIKERKPRIGRNPKTGDLYKIPP 80 Query: 78 RRVVVFKASS 87 R + FK S Sbjct: 81 RYNLTFKPSQ 90 >gi|300775502|ref|ZP_07085363.1| integration host factor subunit alpha [Chryseobacterium gleum ATCC 35910] gi|300505529|gb|EFK36666.1| integration host factor subunit alpha [Chryseobacterium gleum ATCC 35910] Length = 96 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 44/82 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +IS + G + ++ + V EI S G+ + + F +F +K + ++ G Sbjct: 1 MTKAELVNTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFIIKTRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N ++I + FK S Sbjct: 61 RNISKNTAIEIPAHNIPAFKPS 82 >gi|218768639|ref|YP_002343151.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491] gi|304386918|ref|ZP_07369179.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|14194646|sp|Q9JR30|DBHC_NEIMA RecName: Full=DNA-binding protein HU-beta 2 gi|6900359|emb|CAB71971.1| putative DNA-binding protein [Neisseria meningitidis] gi|121052647|emb|CAM08987.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491] gi|304339023|gb|EFM05116.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|319410872|emb|CBY91264.1| DNA-binding protein HU-B [Neisseria meningitidis WUE 2594] Length = 91 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E LS++ + FV + + G + + F TFH Q R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I R+ F++ LK + Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAV 89 >gi|226227080|ref|YP_002761186.1| DNA-binding protein [Gemmatimonas aurantiaca T-27] gi|226090271|dbj|BAH38716.1| DNA-binding protein [Gemmatimonas aurantiaca T-27] Length = 110 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T++DLV++++ +S+KD R V + I ++ + I++ F TF ++Q Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+ RN +T V++ R V VFK S L+ + Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95 >gi|282878889|ref|ZP_06287653.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] gi|281298888|gb|EFA91293.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] Length = 95 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 49/85 (57%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + +S+ G +++ + +V TL E+ + GE+I I SF TF VK++ R+ N Sbjct: 5 EFIAELSRRAGYTQEQTQNYVRTLVEEMTNILGEGESIAIPSFGTFEVKKRMERILTNPS 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T +++ + P+ V+ F+ +K+++ Sbjct: 65 TGKKMLVPPKLVLSFRPMPSVKEQL 89 >gi|256820793|ref|YP_003142072.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|315223936|ref|ZP_07865781.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287] gi|256582376|gb|ACU93511.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|314946108|gb|EFS98112.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287] Length = 92 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ GL++ DS + V F+ + + +G+ + + F ++ V +K +R Sbjct: 1 MNKSELIDAIAAGSGLTKTDSKKAVEAFFSSVEKALKKGDKVAVVGFGSWSVAKKEAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +K+ ++VV FKA + L + + Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGAELSEAV 89 >gi|187924976|ref|YP_001896618.1| integration host factor subunit beta [Burkholderia phytofirmans PsJN] gi|226709783|sp|B2T634|IHFB_BURPP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|187716170|gb|ACD17394.1| integration host factor, beta subunit [Burkholderia phytofirmans PsJN] Length = 107 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLAARFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FK L++R+ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90 >gi|127511364|ref|YP_001092561.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] gi|126636659|gb|ABO22302.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] Length = 90 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ ++ R + + + ++ GE I I F +F + +R G Sbjct: 1 MNKTELVAKIAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETTSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIPAAVVPKFKAGKTLK 86 >gi|220907896|ref|YP_002483207.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7425] gi|219864507|gb|ACL44846.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7425] Length = 95 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ + +KD+ +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAQKANVKKKDADAVLTAALETIMETVSSGDKVTLVGFGSFEPRERQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+++ I RV F A + K+++ Sbjct: 61 RNPKTNEKMVIPATRVPAFSAGKLFKEKV 89 >gi|90023476|ref|YP_529303.1| nucleoid protein Hbs [Saccharophagus degradans 2-40] gi|89953076|gb|ABD83091.1| bacterial nucleoid protein Hbs [Saccharophagus degradans 2-40] Length = 91 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV++++ LS + + V+ +F+ I ++ R +++ + F +F +++ +R GRN Sbjct: 3 KSDLVEAVANAADLSPRQADDAVSAIFDHITNALARKDSVNLVGFGSFITRERAARQGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 QT + I + FK LK ++D Sbjct: 63 PQTGAAINIAASVLPAFKPGKKLKDALVD 91 >gi|59711406|ref|YP_204182.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio fischeri ES114] gi|59479507|gb|AAW85294.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio fischeri ES114] Length = 98 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 48/87 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ +S LV I++ +S+ + R + L + ++ G+ + + F +F V+++ +R Sbjct: 8 TVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAART 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + ++I +V FKA LK Sbjct: 68 GRNPKTGEAIEISAAKVPAFKAGKALK 94 >gi|225075294|ref|ZP_03718493.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens NRL30031/H210] gi|224953469|gb|EEG34678.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens NRL30031/H210] Length = 109 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ G+ + + F TF+V ++ R G Sbjct: 21 VNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 80 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 81 RNPKTGEPLTIAAAKTPKFRAGKALK 106 >gi|163757832|ref|ZP_02164921.1| putative integration host factor beta subunit [Hoeflea phototrophica DFL-43] gi|162285334|gb|EDQ35616.1| putative integration host factor beta subunit [Hoeflea phototrophica DFL-43] Length = 96 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++++ + L +D V + +EI D+ +G +++ F F VK + R Sbjct: 1 MIKSELVQAVAARNPHLYHRDVENIVNAVLDEITDALSQGTRVELRGFGAFSVKNRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK L++R+ D Sbjct: 61 GRNPRTGEPVFVEEKWVPFFKTGKELRERLNPD 93 >gi|258406356|ref|YP_003199098.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798583|gb|ACV69520.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 98 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++D+V +I ++ SR + V + + + DS + A+ IS F F K Sbjct: 3 GKTLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEP 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86 R GRN QT + + + R VVVF+ S Sbjct: 63 RKGRNPQTEEAITLPGRTVVVFRLS 87 >gi|218245818|ref|YP_002371189.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|257058864|ref|YP_003136752.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] gi|218166296|gb|ACK65033.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|256589030|gb|ACU99916.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] Length = 98 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV I+ + +++KD+++ + L I ++ GE + + F TF + + R G Sbjct: 1 MNKEDLVNMIAAKTRITKKDTSQILDALTETIMETVASGEKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT Q + I V F A + K+++++ Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKEQVVN 91 >gi|167747374|ref|ZP_02419501.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662] gi|317471104|ref|ZP_07930476.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA] gi|167653352|gb|EDR97481.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662] gi|316901418|gb|EFV23360.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA] Length = 92 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + LS+KD+ + + + I + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIASKTELSKKDAEKALKAFTDVIAEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN ++ + + I + FKA LK Sbjct: 61 RNPRSGEVMNIPASKAPKFKAGKALK 86 >gi|237746607|ref|ZP_04577087.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS] gi|229377958|gb|EEO28049.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS] Length = 90 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ + R + + I ++ + ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEYIAKSADISKAAAARSLDAVMEAITETLKKDGSVTLVGFGTFSVGERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI RV F+A +LK Sbjct: 61 RNPRTGEEIKIKSARVPKFRAGKLLK 86 >gi|307719533|ref|YP_003875065.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192] gi|306533258|gb|ADN02792.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192] Length = 102 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKG 60 ++ +T++ +V++IS+ LS+KD + + F+E+ + V G+ +++ F TF ++ +KG Sbjct: 5 TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VK++ V VF+ LK + + Sbjct: 65 RDRARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99 >gi|198283154|ref|YP_002219475.1| integration host factor subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667528|ref|YP_002425383.1| integration host factor, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247675|gb|ACH83268.1| integration host factor, beta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519741|gb|ACK80327.1| integration host factor, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 101 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+K+IS ++ LS +D + + + D+ GE I+I F +F + + ++ Sbjct: 1 MTKSELIKNISAQYPHLSVRDIEMATRQMLDYLSDALAEGERIEIRGFGSFSMHVRPAKQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + +RV FK L++++ Sbjct: 61 GRNPKTGEPVLVPEKRVPHFKPGKELREQV 90 >gi|323358137|ref|YP_004224533.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum StLB037] gi|323274508|dbj|BAJ74653.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum StLB037] Length = 95 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K+IT+++LV SI+ G S+ + + +LF+ + ++ +G + I + F +R Sbjct: 4 KSITKTELVASIASATGQSQSAVSGVLDSLFSTVSEAVAKGSKVSIPGWIAFEQVATSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E+ I + V A S LK + Sbjct: 64 TGRNPQTGEEISIPAGKRVKVTAGSKLKAAV 94 >gi|294666559|ref|ZP_06731800.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603703|gb|EFF47113.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 122 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 46/81 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 33 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 92 Query: 65 RNLQTNQEVKIDPRRVVVFKA 85 RN +T +KI + FKA Sbjct: 93 RNPKTGDSIKIAASKNPAFKA 113 >gi|91784810|ref|YP_560016.1| integration host factor subunit beta [Burkholderia xenovorans LB400] gi|123062639|sp|Q13VC5|IHFB_BURXL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91688764|gb|ABE31964.1| Integration host factor, beta subunit [Burkholderia xenovorans LB400] Length = 107 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FK L++R+ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90 >gi|327402190|ref|YP_004343028.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] gi|327317698|gb|AEA42190.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] Length = 96 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I++E GL R ++ + V I S +G+ + + F +F VK++ + G Sbjct: 1 MTKADIVAEIAEETGLERNEAQKAVEAFMTSIKTSLTKGQNVYLRGFGSFIVKERAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N + I + FK + K +++++ R Sbjct: 61 RNISKNTTIIIPAHNIPSFKPA----KTFVEEVKNR 92 >gi|315223284|ref|ZP_07865145.1| DNA-binding protein HU [Streptococcus anginosus F0211] gi|319938741|ref|ZP_08013105.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV] gi|315187716|gb|EFU21470.1| DNA-binding protein HU [Streptococcus anginosus F0211] gi|315419709|gb|ADU15824.1| histone-like protein [Streptococcus anginosus SK52] gi|319811791|gb|EFW08057.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+ I +V FKA LK Sbjct: 64 PQTGAEITIAASKVPAFKAGKALK 87 >gi|332664549|ref|YP_004447337.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332333363|gb|AEE50464.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 108 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DLV +IS++ G+ + D + T F E+ S GE + I F +F +K++ ++GR+ Sbjct: 3 KADLVAAISEKTGVPKVDVLVTLETFFKEVKGSLADGENVYIRGFGSFVIKRRAKKIGRH 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 ++ N ++I + FK + I +++ Sbjct: 63 IKKNVAIEIPEHFIPSFKPAKIFVEQV 89 >gi|56460462|ref|YP_155743.1| nucleoid DNA-binding protein, IHF beta subunit [Idiomarina loihiensis L2TR] gi|81678412|sp|Q5QZ46|IHFB_IDILO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|56179472|gb|AAV82194.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit [Idiomarina loihiensis L2TR] Length = 93 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L++ ++ + L K V + ++ S +G+ ++I F +F + + RVG Sbjct: 1 MTKSELIERLTLKHELPPKQVEASVKEILEQMVQSLSQGKRVEIRGFGSFSLHYRAPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V++D + V FKA L++R+ Sbjct: 61 RNPKTGDPVELDGKYVPHFKAGKELRERV 89 >gi|296121526|ref|YP_003629304.1| histone family protein DNA-binding protein [Planctomyces limnophilus DSM 3776] gi|296013866|gb|ADG67105.1| histone family protein DNA-binding protein [Planctomyces limnophilus DSM 3776] Length = 171 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++VK+IS E GL++ + V F+ I ++ V I++ +F F VK++ +R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +V + + VV FK +++++ Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89 >gi|332520714|ref|ZP_08397176.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] gi|332044067|gb|EGI80262.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] Length = 90 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ G+++ S + + EI + +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTDLIDAMAEHAGITKAASKKALECALIEIEGALQKGDRVSLVGFGSWSVSKRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI + VV FKA S L Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDL 85 >gi|257094466|ref|YP_003168107.1| integration host factor subunit beta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046990|gb|ACV36178.1| integration host factor, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 97 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL+ +++ F L KD+ V + + ++ G+ I+I F +F + + RV Sbjct: 1 MTKSDLIAQLAERFPQLVAKDADLSVKMILEAMAEALSNGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA L++R+ Sbjct: 61 GRNPKSGEKVNVPEKWVPHFKAGKELRERV 90 >gi|225850239|ref|YP_002730473.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] gi|225645148|gb|ACO03334.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] Length = 95 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +SDL+ + + F L +KD + F + D+ +G+ ++I +F VK K SR Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V++ +RVV FK +LKK++ Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >gi|103488110|ref|YP_617671.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] gi|98978187|gb|ABF54338.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] Length = 91 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL +++ G+S+ D+ ++V +F I D+A +GE I ++ F F VK +R G Sbjct: 1 MNNSDLADALAASNGISKSDARKYVDGVFAAIADAAAKGEEISLNGFGKFKVKDSPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I + + F + +K ++ Sbjct: 61 RNPSTGETIQIAASKKLTFAPAKAVKDKL 89 >gi|330752075|emb|CBL80585.1| histone-like bacterial DNA-binding protein [uncultured Leeuwenhoekiella sp.] Length = 90 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 49/85 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++++ G+++ + + + + + S G+ + + F ++ V Q+ +R G Sbjct: 1 MNKSDLIDAMAESAGITKAAAKKALESFLGNVEKSLKSGDRVSLVGFGSWSVSQRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + ++I + VV FKA S L Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDL 85 >gi|331092508|ref|ZP_08341330.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA] gi|330400729|gb|EGG80332.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA] Length = 91 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELITAVAENAELSKKDAEKALKAFVEVVTEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I +V FK LK Sbjct: 61 RNPQTGKTMSIAACKVPKFKVGKALK 86 >gi|154483310|ref|ZP_02025758.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC 27560] gi|149735820|gb|EDM51706.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC 27560] Length = 112 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +I++E GLS+ D+ + V + + + +GE I++ F TF V ++ R G Sbjct: 23 MNKTEFIAAIAEEAGLSKTDAAKAVKAFTDVVVEEMKKGEKIQLVGFGTFEVSKRPERQG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T +++ I V FKA + LK Sbjct: 83 INPATKEKITIAAANVPKFKAGAGLK 108 >gi|296159961|ref|ZP_06842781.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1] gi|295889707|gb|EFG69505.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1] Length = 107 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FK L++R+ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV 90 >gi|190573025|ref|YP_001970870.1| putative DNA-binding protein HU-beta [Stenotrophomonas maltophilia K279a] gi|190010947|emb|CAQ44556.1| putative DNA-binding protein HU-beta [Stenotrophomonas maltophilia K279a] Length = 90 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ L++ +S+R V + I + G+A+ + F TF V+ + +R G Sbjct: 1 MNKTELIDAVAEAADLTKAESSRAVDAVVAAITKALKDGDAVTLVGFGTFQVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAV 89 >gi|253990888|ref|YP_003042244.1| DNA-binding protein HU-beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782338|emb|CAQ85502.1| DNA-binding protein HU-beta (NS1) (HU-1) [Photorhabdus asymbiotica] Length = 99 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + + G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+ LK + Sbjct: 66 RNPQTGKELKIAAAKVPAFRPGKSLKDAV 94 >gi|229073027|ref|ZP_04206221.1| DNA-binding protein HU 1 [Bacillus cereus F65185] gi|228710145|gb|EEL62125.1| DNA-binding protein HU 1 [Bacillus cereus F65185] Length = 93 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 43/71 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I +++L K ++++ L +KD T+ + I ++ GE ++I F TF V+++ +R G Sbjct: 4 INKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILGFGTFEVREQSARTG 63 Query: 65 RNLQTNQEVKI 75 N QT +E++I Sbjct: 64 HNPQTGEEMQI 74 >gi|169335876|ref|ZP_02863069.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis DSM 17244] gi|169258614|gb|EDS72580.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis DSM 17244] Length = 90 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++S++ GL++K+ + I ++ + + + + F TF VK++ R G Sbjct: 1 MNKSELVSALSEKTGLTKKECDNCLGAFIETITETLQKQDKVSLVGFGTFEVKERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N QT +++ I VFKA LK Sbjct: 61 INPQTKEKITIPASNAPVFKAGKALK 86 >gi|325285938|ref|YP_004261728.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] gi|324321392|gb|ADY28857.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] Length = 96 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS + G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVSKISDKLGIEKGDVQATVETFMEEVKTSLENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|323698417|ref|ZP_08110329.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323458349|gb|EGB14214.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 90 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ G S+ + + + + I D G + ++ F TF V ++ +R G Sbjct: 1 MTKAELVAKIAEKIGTSKAQAEASMNAILDTIQDELAAGNKLTLTGFGTFSVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I +V FK +LK Sbjct: 61 RNPRTGTALNIPACKVAQFKPGKVLK 86 >gi|315419717|gb|ADU15828.1| histone-like protein [Streptococcus anginosus] Length = 91 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E+ I +V FKA LK Sbjct: 64 PQTGAEITIAASKVPTFKAGKALK 87 >gi|253700777|ref|YP_003021966.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|251775627|gb|ACT18208.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 91 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ + LS K + V +F + D+ + G+ I+I F +F VK+ + G Sbjct: 1 MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGFGSFVVKEYDAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89 >gi|148555324|ref|YP_001262906.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148500514|gb|ABQ68768.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 92 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ +S++ LS K+ + V+TLF+ I G +++ F F + + +R+ Sbjct: 1 MIRSELVQLLSQDNPDLSPKEVEKIVSTLFDAITKRLAEGGRVELRGFGAFSTRARDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + +RV FK ++ R+ Sbjct: 61 GRNPRTGDTVPVSAKRVPYFKPGKEMRVRL 90 >gi|256394110|ref|YP_003115674.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] gi|256360336|gb|ACU73833.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] Length = 167 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 49/106 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL ++++ + D+ ++V +F+ I GE ++I F TF Q+ +R+G Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 RN QT +++ F A + R+ + DV P Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEASAVPAEASQDVAKP 107 >gi|163756383|ref|ZP_02163497.1| fumarate hydratase [Kordia algicida OT-1] gi|161323735|gb|EDP95070.1| fumarate hydratase [Kordia algicida OT-1] Length = 101 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 54/92 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + +++L+ +++ + G+S+ + + + + + + +G+ + + F ++ V ++ + Sbjct: 9 STIMNKTELIDAMAADAGISKAAAKKSLESFLGNVEGALKKGDRVSLVGFGSWSVSERAA 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN QT + ++I ++VV FKA S L K + Sbjct: 69 REGRNPQTGKTIQIAAKKVVKFKAGSDLGKAV 100 >gi|197286600|ref|YP_002152472.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320] gi|226328707|ref|ZP_03804225.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198] gi|227355207|ref|ZP_03839616.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC 29906] gi|194684087|emb|CAR45470.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320] gi|225201893|gb|EEG84247.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198] gi|227164716|gb|EEI49570.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC 29906] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +S++++ L++ + + + + + G+++++ F TF V + R G Sbjct: 1 MNKAELTESVAEKADLTKTQAKAAIEAFIDSVTGALKEGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F A LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFTAGKALKDAV 89 >gi|91775765|ref|YP_545521.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT] gi|91709752|gb|ABE49680.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +S+L++ I+K GLS+ + R + I S +GE + + F TF+V ++ +R GRN Sbjct: 4 KSELIEQIAKSAGLSKAAAGRALDATTAAITKSLKKGELVTLIGFGTFYVGKRAARNGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 +T +KI F+A LK Sbjct: 64 PRTGATIKIKAANSPKFRAGKALK 87 >gi|73543074|ref|YP_297594.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] gi|72120487|gb|AAZ62750.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] Length = 92 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + + I D+ G+ + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVANGDTLSLVGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|22536684|ref|NP_687535.1| DNA-binding protein HU [Streptococcus agalactiae 2603V/R] gi|25010620|ref|NP_735015.1| DNA-binding protein HU [Streptococcus agalactiae NEM316] gi|76786815|ref|YP_329238.1| DNA-binding protein HU [Streptococcus agalactiae A909] gi|77405315|ref|ZP_00782411.1| DNA-binding protein HU [Streptococcus agalactiae H36B] gi|77414015|ref|ZP_00790187.1| DNA-binding protein HU [Streptococcus agalactiae 515] gi|22533525|gb|AAM99407.1|AE014215_1 DNA-binding protein HU [Streptococcus agalactiae 2603V/R] gi|23094974|emb|CAD46195.1| HU like DNA-binding protein [Streptococcus agalactiae NEM316] gi|76561872|gb|ABA44456.1| DNA-binding protein HU [Streptococcus agalactiae A909] gi|77159941|gb|EAO71080.1| DNA-binding protein HU [Streptococcus agalactiae 515] gi|77176110|gb|EAO78883.1| DNA-binding protein HU [Streptococcus agalactiae H36B] gi|319744552|gb|EFV96905.1| DNA-binding protein HU [Streptococcus agalactiae ATCC 13813] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT E++I +V FKA LK Sbjct: 64 PQTGAEIEIAASKVPAFKAGKALK 87 >gi|315127186|ref|YP_004069189.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315015700|gb|ADT69038.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + + G+++ + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGETIQIAAANIPAFKAGKALKDAV 89 >gi|145629383|ref|ZP_01785181.1| integration host factor alpha-subunit [Haemophilus influenzae 22.1-21] gi|144978226|gb|EDJ87990.1| integration host factor alpha-subunit [Haemophilus influenzae 22.1-21] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRN 66 GRN Sbjct: 63 GRN 65 >gi|257463308|ref|ZP_05627706.1| histone family protein DNA-binding protein [Fusobacterium sp. D12] gi|317060887|ref|ZP_07925372.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|313686563|gb|EFS23398.1| DNA-binding protein HU [Fusobacterium sp. D12] Length = 93 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V +++K+ ++ K++ R + + +S V G +K F T+ K++ +R Sbjct: 1 MTKKEFVAALAKKAEVTGKEADRMLKCFLELVEESLVAGNDVKFIGFGTWETKKREARKL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +RVV FK L ++ Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKV 89 >gi|90407417|ref|ZP_01215601.1| DNA-binding protein [Psychromonas sp. CNPT3] gi|90311448|gb|EAS39549.1| DNA-binding protein [Psychromonas sp. CNPT3] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +I++ +S+ ++R + + + + V G+ + + F F VK + +R G Sbjct: 1 MNKGQLIDNIAESADISKAAASRALDAFISSVTQALVEGDNVSLIGFGAFTVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK I Sbjct: 61 RNPQTGAPIEIKAAKVPAFKAGKSLKDAI 89 >gi|121582539|ref|YP_974071.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|309783318|ref|ZP_07678028.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA] gi|330827371|ref|YP_004390609.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|120608597|gb|ABM44336.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|308917862|gb|EFP63549.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA] gi|329312679|gb|AEB87093.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DL+ +I+++ S+ +TRF+ +L + + +G A+K++ F TF +R G Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +KI F + K + D Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVKD 91 >gi|164688880|ref|ZP_02212908.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM 16795] gi|164602084|gb|EDQ95549.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM 16795] Length = 93 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++K++ + L I ++ V G+ +++ F TF +++ +R G Sbjct: 1 MNKAELVSRMAEKSELTKKEAEMALNALMESIQEALVSGDKVQLVGFGTFETRERAARKG 60 Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRI 93 RN + QE+ I + VFKA LK+ I Sbjct: 61 RNPRNPQQEIDIPASKAPVFKAGKSLKEAI 90 >gi|302670433|ref|YP_003830393.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302394906|gb|ADL33811.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 92 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+KE GLS+KD+ + + + + +++ F TF ++ +R G Sbjct: 1 MNKTELIDAIAKEAGLSKKDAAAALNAFTDTVTKELKKKGKVQLVGFGTFETTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT +KI FKA LK Sbjct: 61 KNPQTGAAIKIPASVAPKFKAGKALK 86 >gi|291166397|gb|EFE28443.1| DNA-binding protein HU [Filifactor alocis ATCC 35896] Length = 93 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++KD + + + D+ V GE +++ F +F +++ R G Sbjct: 1 MNKAELVTKMAEKCNLTKKDMEVALNAFMSCVEDALVAGEKVQLVGFGSFETRERAEREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN ++ +EV KI + VFKA LK+++ Sbjct: 61 RNPRSPEEVIKIPASKAPVFKAGKGLKEKV 90 >gi|328948273|ref|YP_004365610.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] gi|328448597|gb|AEB14313.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] Length = 108 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKG 60 SK +T++DL++++ + + + LF+++ + G I++ F TF + +KG Sbjct: 3 SKKVTKNDLLEAVYQNTKYEKLAVQTIMENLFDQMKEVLKDGNTIELRGFGTFEARLRKG 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + RN +T Q++ + P VV F++ LKK + D Sbjct: 63 RQNARNPKTGQQLSVAPHYVVAFRSGQELKKALWD 97 >gi|258513051|ref|YP_003189308.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|329113763|ref|ZP_08242536.1| DNA-binding protein HU [Acetobacter pomorum DM001] gi|256634954|dbj|BAI00929.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256638009|dbj|BAI03977.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256641063|dbj|BAI07024.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256644118|dbj|BAI10072.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256647173|dbj|BAI13120.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256650226|dbj|BAI16166.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256653217|dbj|BAI19150.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656270|dbj|BAI22196.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] gi|326696919|gb|EGE48587.1| DNA-binding protein HU [Acetobacter pomorum DM001] Length = 92 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 44/82 (53%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL++ I + +KD+ + T+F I ++AV+G+ I+ F F V+Q R GRN Q Sbjct: 5 DLIERIVAATDIQKKDAKTALETVFAAITEAAVKGDDTTIAGFGKFVVRQTAERKGRNPQ 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T E+ I R + + + +K Sbjct: 65 TGAELVIPASRKLAYTPAKAVK 86 >gi|160915098|ref|ZP_02077311.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991] gi|158432897|gb|EDP11186.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991] Length = 94 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 45/75 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + L +S++++ +++KD+ V T+F EI +G ++IS F F V ++ Sbjct: 1 MSEILNKKALAESLAEKLEMTKKDAGVAVDTVFEEITAILAKGGKVEISGFGKFEVAERP 60 Query: 61 SRVGRNLQTNQEVKI 75 R+G N T +++KI Sbjct: 61 ERMGINPATKEQIKI 75 >gi|56460110|ref|YP_155391.1| nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR] gi|56179120|gb|AAV81842.1| Bacterial nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + ++ + + D+ + + + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I +V FKA LK + Sbjct: 61 RNPQTGETIQIAAAKVPSFKAGKALKDAV 89 >gi|307547003|ref|YP_003899482.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581] gi|307219027|emb|CBV44297.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I++ LS+ +++ + + +EI S G+ + + F TF V+++ +R G+N Sbjct: 3 KPELAAAIAERADLSKDKASQVLNVILDEITGSVSDGKDVSLIGFGTFTVRERAARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + + I + V FK LK + Sbjct: 63 PQTGEPLTIPASKTVAFKPGKGLKDAV 89 >gi|34540963|ref|NP_905442.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188995257|ref|YP_001929509.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] gi|34397278|gb|AAQ66341.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188594937|dbj|BAG33912.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] Length = 92 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +I+K G+ ++ + + V + + I DS G+ + + F +F VK++ + Sbjct: 1 MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ + I R + FK S I ++ D Sbjct: 61 RNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD 92 >gi|84387165|ref|ZP_00990187.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01] gi|84378026|gb|EAP94887.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ I+ +S+ + + L I ++ +G+ + I F +F V + +R G Sbjct: 1 MNKSQLVEHIATSADISKDQAGSALNALVEGISNTLAKGDDVAILGFGSFKVNSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I + FKA LK+ Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87 >gi|118580201|ref|YP_901451.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118502911|gb|ABK99393.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS+L++ ++ +S K + +T +F+ + ++ V+ E I+I +F +K+ + G Sbjct: 1 MNRSELIEHLALRKDISHKRAEEIITLIFSAMTEAMVKNERIEIRGLGSFVIKEYDTYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + + P+++ FK LK+ ++ Sbjct: 61 RNPKTGEPILVRPKKLPFFKVGKELKEMVI 90 >gi|89886013|ref|YP_516210.1| DNA-binding protein HU-beta [Sodalis phage phiSG1] gi|89191748|dbj|BAE80495.1| DNA-binding protein HU-beta [Sodalis phage phiSG1] gi|125470043|gb|ABN42235.1| gp28 [Sodalis phage phiSG1] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++++S++ +S+ + + + + + S G+ +KI+ F TF VK + R G Sbjct: 1 MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RV F+A LK+ + Sbjct: 61 RNPKTGEAMTIPAARVPAFRARKGLKEAV 89 >gi|118497645|ref|YP_898695.1| DNA-binding protein HU-beta [Francisella tularensis subsp. novicida U112] gi|208779447|ref|ZP_03246793.1| DNA-binding protein HU-beta [Francisella novicida FTG] gi|254373011|ref|ZP_04988500.1| hypothetical protein FTCG_00584 [Francisella tularensis subsp. novicida GA99-3549] gi|118423551|gb|ABK89941.1| DNA-binding protein HU-beta [Francisella novicida U112] gi|151570738|gb|EDN36392.1| hypothetical protein FTCG_00584 [Francisella novicida GA99-3549] gi|208745247|gb|EDZ91545.1| DNA-binding protein HU-beta [Francisella novicida FTG] gi|332678353|gb|AEE87482.1| DNA-binding protein HU-beta [Francisella cf. novicida Fx1] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI +V FKA LK + Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAV 89 >gi|320528391|ref|ZP_08029553.1| DNA-binding protein HU [Solobacterium moorei F0204] gi|320131305|gb|EFW23873.1| DNA-binding protein HU [Solobacterium moorei F0204] Length = 94 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 52/93 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+ + + + ++++ L++K++ + +F+ + + G + IS F F VK + Sbjct: 1 MAETLNKKSIAELVAEKHNLTKKEAAEIIDLVFDTVSGTLKDGGRVDISGFGKFEVKTRA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R G N QT + + I +V FKA+ LK+ + Sbjct: 61 ARTGINPQTKETITIPESKVPGFKAAKNLKELV 93 >gi|86141624|ref|ZP_01060170.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella blandensis MED217] gi|85832183|gb|EAQ50638.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella blandensis MED217] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++++ G+++ + + + + I S G+ + + F ++ V ++ +R G Sbjct: 1 MNKSDLIDAMAEDAGITKAAAKKALESFLGNIEKSLKGGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + ++I + VV FKA S L Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDL 85 >gi|295690336|ref|YP_003594029.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] gi|295432239|gb|ADG11411.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] Length = 92 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 8 SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 SDLV +++ E L++ + + +F + ++AV+GE + I F F V+ K +R GRN Sbjct: 4 SDLVDAAVAAEPKLTKAQAKALIDGVFKALTEAAVKGEEVSIPGFGKFKVQAKPARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + V F + LK + Sbjct: 64 PSTGATIEIAASKKVAFTPAKQLKDAV 90 >gi|302878840|ref|YP_003847404.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302581629|gb|ADL55640.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +I+ +S+ + R + N I + GE + + F F V ++ RVG Sbjct: 1 MNKSDLVDAIATSADISKAAAGRALDGALNAIKTALKNGEEVSLVGFGAFTVGERAGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I +V F+A LK + Sbjct: 61 RNPQTGAAITIKAAKVPKFRAGKGLKDAV 89 >gi|221642274|ref|YP_002533361.1| small DNA-binding protein (bacterial histone-like family) [Bacillus cereus Q1] gi|228962916|ref|ZP_04124153.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|221243209|gb|ACM15918.1| small DNA-binding protein (bacterial histone-like family) [Bacillus cereus Q1] gi|228796774|gb|EEM44147.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] Length = 92 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + L++ ++ V + I + GE +++ F TF V+++ +R G Sbjct: 1 MNKSELIKQVAIQSELTKPQASLAVDAVLESIQHALQNGEHVQLLGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + I + FKA LK+ + Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAV 89 >gi|15887688|ref|NP_353369.1| integration host factor subunit beta [Agrobacterium tumefaciens str. C58] gi|325291772|ref|YP_004277636.1| integration host factor subunit beta [Agrobacterium sp. H13-3] gi|24418456|sp|Q8UIF9|IHFB_AGRT5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|15155245|gb|AAK86154.1| integration host factor, beta subunit [Agrobacterium tumefaciens str. C58] gi|325059625|gb|ADY63316.1| integration host factor subunit beta [Agrobacterium sp. H13-3] Length = 100 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V ++ + V FK L++R+ M Sbjct: 61 GRNPRTGESVFVEEKWVPFFKTGKELRERLNPGM 94 >gi|226358227|ref|YP_002787966.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] gi|226319870|gb|ACO47864.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] Length = 125 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 49/92 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + ++ LV+ ++ GL++K S V+T+ I + G+++ + T VKQ + Sbjct: 34 SNKVAKTQLVEMVADRTGLTKKQSEEAVSTMLESIVGALREGKSVGMPGLGTLSVKQTAA 93 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R G T+++++I + V FK +S LK + Sbjct: 94 RTGVRPGTSEKIQIPAGKKVAFKVASTLKGNL 125 >gi|167625721|ref|YP_001676015.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] gi|167355743|gb|ABZ78356.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ GE I I F +F ++ +R G Sbjct: 1 MNKTELVAKMAESAELTKAEAARALKSFEVTVAEAMKNGEKISIVGFGSFETTERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86 >gi|71281140|ref|YP_270448.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H] gi|71146880|gb|AAZ27353.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ +S+ + R + + + D GE + + F TF V+ + +R G Sbjct: 1 MNKSQLIEKIAAGADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT ++I ++ FKA LK Sbjct: 61 RNPQTGATIQIAAAKIPSFKAGKALK 86 >gi|88798824|ref|ZP_01114407.1| DNA-binding protein HU [Reinekea sp. MED297] gi|88778587|gb|EAR09779.1| DNA-binding protein HU [Reinekea sp. MED297] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +S+ + R + + + + ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAVAAAADISKASAGRALDAMVDSVTNALKEGDQVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I +V FKA LK + Sbjct: 61 RNPQTGEPIQIAAAKVPGFKAGKALKDAV 89 >gi|317486543|ref|ZP_07945366.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316922218|gb|EFV43481.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDST-RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV I + GL K +T +F+ + + ++ GE + + F +F V ++ R Sbjct: 1 MTKADLVDKIHAKAGLGTKAATEQFLDAAISVLSETIANGEQVSFTGFGSFKVVERSERK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E I RVV F LK+ + Sbjct: 61 GRNPRTGEECLIPASRVVKFTPGKALKEAV 90 >gi|167627762|ref|YP_001678262.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668326|ref|ZP_04755904.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876859|ref|ZP_05249569.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597763|gb|ABZ87761.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842880|gb|EET21294.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI +V FKA LK + Sbjct: 61 RNPKTGETIKIAASKVPSFKAGKGLKDAV 89 >gi|145301241|ref|YP_001144081.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] gi|142856018|gb|ABO92333.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] Length = 90 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +I++ +++ + V L I G ++ ++ F TF V+ + +R G Sbjct: 1 MNKSDLIMAIAESADITKAKAEAAVNALMATITTELKEGGSVALTGFGTFQVRARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +++ + FKA LK + Sbjct: 61 RNPQTGEAIEVAAANIPSFKAGKSLKDAV 89 >gi|148263975|ref|YP_001230681.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146397475|gb|ABQ26108.1| bacterial nucleoid protein Hbs [Geobacter uraniireducens Rf4] Length = 91 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++++ G+++ D+ + V I D +G+ + + F TF ++ +R G Sbjct: 1 MTKTDLVNAVAEIAGITKVDAEKSVKAFLEAITDCLTKGDKLTLVGFGTFSTAKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT +++ I FKA + LK Sbjct: 61 QNPQTGKKIDIPASVNPKFKAGNTLK 86 >gi|217968881|ref|YP_002354115.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] gi|217506208|gb|ACK53219.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V++++ + R + R ++ + + I + +GE + + F +F V Q+ +R G Sbjct: 1 MNKGEFVEALADRLDVHRAQADRALSAVLDIIAEQLAKGEKVAFTGFGSFEVSQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I V F A + LK + Sbjct: 61 RNPQTGATIEIAASSVPKFTAGATLKASV 89 >gi|329906686|ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327547181|gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 92 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L KD+ V T+ + + D+ G+ I+I F +F + + R+GRN ++ ++V + +R Sbjct: 8 LVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEKVMVPEKR 67 Query: 80 VVVFKASSILKKRIMDDMRGRKCNKD 105 V FK L++R+ D M G+ +D Sbjct: 68 VPHFKPGKELRERV-DAMVGQPIIED 92 >gi|309775495|ref|ZP_07670496.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] gi|313897383|ref|ZP_07830926.1| DNA-binding protein HU 1 [Clostridium sp. HGF2] gi|308916753|gb|EFP62492.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] gi|312957753|gb|EFR39378.1| DNA-binding protein HU 1 [Clostridium sp. HGF2] Length = 94 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 46/75 (61%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + LV+ ++++ +++KD+T V T+F+EI + G + IS F F + ++ Sbjct: 1 MSEILNKKALVEVVAEKLEMTKKDATVAVETVFDEIAKTLSEGGKVDISGFGKFEISERP 60 Query: 61 SRVGRNLQTNQEVKI 75 +R+G N T + ++I Sbjct: 61 ARMGINPATKEPLEI 75 >gi|86749688|ref|YP_486184.1| histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2] gi|86572716|gb|ABD07273.1| Histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2] Length = 103 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + + L I +GE I+I V+++ +R Sbjct: 14 TVTLKHLAAALAEEHELSKKQTEAILGDLVGRITKHLKKGERIRIVGLGILQVRKRAART 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + ++I + V F+A+ LK+ I Sbjct: 74 GRNPATGETIQIKASKKVAFRAAKELKEAI 103 >gi|37527726|ref|NP_931071.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787162|emb|CAE16238.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + + G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+ LK + Sbjct: 61 RNPQTGKELKIAAAKVPAFRPGKGLKDAV 89 >gi|58979367|gb|AAW83348.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979385|gb|AAW83357.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979387|gb|AAW83358.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979389|gb|AAW83359.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979391|gb|AAW83360.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979397|gb|AAW83363.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979421|gb|AAW83375.1| DNA-binding protein HU [Campylobacter jejuni] Length = 98 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + +K+ RV FK LK+ + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >gi|224537593|ref|ZP_03678132.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus DSM 14838] gi|224520790|gb|EEF89895.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus DSM 14838] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 44/80 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GL++ DS + + I + G+ + + F TF V ++ +R+G Sbjct: 1 MNKSELINAMAAESGLTKTDSKKALDAFMAAITKALKAGDKVSLVGFGTFVVAERAARLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 N T Q + I +RV FK Sbjct: 61 INPSTKQSITIPAKRVAKFK 80 >gi|227820609|ref|YP_002824579.1| integration host factor subunit beta [Sinorhizobium fredii NGR234] gi|227339608|gb|ACP23826.1| integration host factor, beta subunit [Sinorhizobium fredii NGR234] Length = 125 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 26 VIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 85 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T V ++ + V FK L++R+ M R Sbjct: 86 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDR 122 >gi|225874874|ref|YP_002756333.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] gi|225793630|gb|ACO33720.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] Length = 89 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D++ + + GL R + V T+F + + G+ I++ F F+V+ + + +G Sbjct: 1 MIKQDIIHHVIERTGLPRTKAEHAVDTVFESLKHALAEGQRIELRGFGVFNVRPRKTGIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T EV I P + V FK L I+D Sbjct: 61 RNPRTGTEVSITPGKAVRFKPGKDL--HILD 89 >gi|320156966|ref|YP_004189345.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O] gi|319932278|gb|ADV87142.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+SI+ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86 >gi|212709793|ref|ZP_03317921.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens DSM 30120] gi|212687604|gb|EEB47132.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K V + + D+ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLAEGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRV 90 >gi|254294703|ref|YP_003060726.1| integration host factor subunit beta [Hirschia baltica ATCC 49814] gi|254043234|gb|ACT60029.1| integration host factor, beta subunit [Hirschia baltica ATCC 49814] Length = 99 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ +S+E R ++ R V + +EI + G+ +++ F F V+Q+ +R Sbjct: 1 MLRSELILRLSEERPEIRPREVERIVDVILDEIAAALEAGDRVELRGFGAFSVRQREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FKA L+ R+ Sbjct: 61 GRNPRTGESVPVEQKFVPFFKAGKELRARL 90 >gi|15597001|ref|NP_250495.1| DNA-binding protein HU [Pseudomonas aeruginosa PAO1] gi|116049754|ref|YP_791439.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14] gi|152988765|ref|YP_001348851.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7] gi|218892242|ref|YP_002441109.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58] gi|254234898|ref|ZP_04928221.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719] gi|254240197|ref|ZP_04933519.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192] gi|296389805|ref|ZP_06879280.1| DNA-binding protein HU [Pseudomonas aeruginosa PAb1] gi|313110501|ref|ZP_07796386.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016] gi|12643997|sp|P05384|DBHB_PSEAE RecName: Full=DNA-binding protein HU-beta gi|9947787|gb|AAG05193.1|AE004606_7 DNA-binding protein HU [Pseudomonas aeruginosa PAO1] gi|115584975|gb|ABJ10990.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14] gi|126166829|gb|EAZ52340.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719] gi|126193575|gb|EAZ57638.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192] gi|150963923|gb|ABR85948.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7] gi|218772468|emb|CAW28250.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58] gi|310882888|gb|EFQ41482.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI ++ FKA LK + Sbjct: 61 RNPQTGKPIKIAAAKIPGFKAGKALKDAV 89 >gi|320540340|ref|ZP_08039992.1| putative HU, DNA-binding transcriptional regulator, beta subunit [Serratia symbiotica str. Tucson] gi|320029660|gb|EFW11687.1| putative HU, DNA-binding transcriptional regulator, beta subunit [Serratia symbiotica str. Tucson] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIATGADISKAVAGRALDAVIVSVTDSLKAGDDVALVGFGTFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A+ LK + Sbjct: 61 RNPQTGKEITIAAAKVPAFRAAKALKDAV 89 >gi|160947371|ref|ZP_02094538.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270] gi|158446505|gb|EDP23500.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270] Length = 92 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ +++ D+ R + + ++ V+GE +++ F TF +++ +R G Sbjct: 1 MNKSELLASMAEKGKITKVDAERALNAFIQTVEETLVKGEKVQLVGFGTFEARERKARSG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKK 91 RN + +EV KI + VFKA LK+ Sbjct: 61 RNPRNPKEVIKIPASKAPVFKAGKSLKE 88 >gi|298368498|ref|ZP_06979816.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] gi|298282501|gb|EFI23988.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E LS++ + FV + + G + + F TFH Q R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVDAFVSVVTQELKDGNDVTLVGFGTFHTAQSAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I R+ F+ LK + Sbjct: 61 RNPKTGEPLTIAARKTPKFRPGKALKDAV 89 >gi|85058652|ref|YP_454354.1| transcriptional regulator HU subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84779172|dbj|BAE73949.1| DNA-binding protein HU-beta [Sodalis glossinidius str. 'morsitans'] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S +G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIGSVTESLQQGDDVALVGFGTFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKGLKDAV 89 >gi|116748864|ref|YP_845551.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116697928|gb|ABK17116.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 96 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+++++K G++ K + V F + ++ +R + ++I F +F VK G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++++ +++ FK LK+R+ Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERV 89 >gi|284006424|emb|CBA71660.1| DNA-binding protein HU-beta [Arsenophonus nasoniae] Length = 100 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ + +LV+ I+KE ++ + + + + +G+ +++ F TF VKQ+ +R Sbjct: 5 SVKKKELVEKIAKESKAAKSVAESVLNAFLKTVSQTLKKGDKVQLIGFGTFEVKQRAARN 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T + +KI +V FKA LK D + G K Sbjct: 65 GRNPKTGKVIKIAAAKVPSFKAGQGLK----DTVNGHK 98 >gi|254420538|ref|ZP_05034262.1| DNA-binding protein HU [Brevundimonas sp. BAL3] gi|196186715|gb|EDX81691.1| DNA-binding protein HU [Brevundimonas sp. BAL3] Length = 92 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ +++K+ G+S+ D+ + +T + I S G ++IS+ F + R GR Sbjct: 3 TQAELIAAVAKDAGVSQADAGKVLTAIVENIHASLKAGGDVRISNLGVFDTAARAEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +KI + V F+ S LK + Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAV 90 >gi|57237741|ref|YP_178989.1| DNA-binding protein HU [Campylobacter jejuni RM1221] gi|121613433|ref|YP_001000587.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81-176] gi|148926594|ref|ZP_01810276.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|153951444|ref|YP_001398017.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei 269.97] gi|157415169|ref|YP_001482425.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81116] gi|167005518|ref|ZP_02271276.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356397|ref|ZP_03223162.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni CG8421] gi|218562532|ref|YP_002344311.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9789717|sp|Q46121|DBH_CAMJE RecName: Full=DNA-binding protein HU; AltName: Full=HCj gi|81675587|sp|Q5HUP6|DBH_CAMJR RecName: Full=DNA-binding protein HU gi|409577|gb|AAA60954.1| hupB [Campylobacter jejuni] gi|57166545|gb|AAW35324.1| DNA-binding protein HU [Campylobacter jejuni RM1221] gi|58979331|gb|AAW83330.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979333|gb|AAW83331.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979337|gb|AAW83333.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979341|gb|AAW83335.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979343|gb|AAW83336.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979345|gb|AAW83337.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979359|gb|AAW83344.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979361|gb|AAW83345.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979369|gb|AAW83349.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979371|gb|AAW83350.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979375|gb|AAW83352.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei] gi|58979405|gb|AAW83367.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei] gi|58979411|gb|AAW83370.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979415|gb|AAW83372.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979417|gb|AAW83373.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979419|gb|AAW83374.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979435|gb|AAW83382.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979439|gb|AAW83384.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979441|gb|AAW83385.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979443|gb|AAW83386.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979445|gb|AAW83387.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979447|gb|AAW83388.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979449|gb|AAW83389.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979451|gb|AAW83390.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979453|gb|AAW83391.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979455|gb|AAW83392.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979457|gb|AAW83393.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979459|gb|AAW83394.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979461|gb|AAW83395.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979485|gb|AAW83407.1| DNA-binding protein HU [Campylobacter jejuni] gi|112360238|emb|CAL35033.1| DNA-binding protein HU homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|121504251|gb|ABM55258.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81-176] gi|145845288|gb|EDK22382.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|152938890|gb|ABS43631.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei 269.97] gi|157386133|gb|ABV52448.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345782|gb|EDZ32420.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni CG8421] gi|284926146|gb|ADC28498.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307747812|gb|ADN91082.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni M1] gi|315058353|gb|ADT72682.1| DNA-binding protein HU-beta [Campylobacter jejuni subsp. jejuni S3] gi|315927538|gb|EFV06871.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929859|gb|EFV09022.1| DNA-binding protein [Campylobacter jejuni subsp. jejuni 305] gi|315932606|gb|EFV11537.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni 327] Length = 98 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + +K+ RV FK LK+ + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >gi|284040813|ref|YP_003390743.1| histone family protein DNA-binding protein [Spirosoma linguale DSM 74] gi|283820106|gb|ADB41944.1| histone family protein DNA-binding protein [Spirosoma linguale DSM 74] Length = 100 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS + G+ + + T + T F+ + DS GE I + F +F K++ +V Sbjct: 1 MTKADVIAEISDKTGIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N + ID + FK + + +++ Sbjct: 61 RNISKNTAMVIDEHFIPSFKPAKVFVEQV 89 >gi|28897694|ref|NP_797299.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD 2210633] gi|91228614|ref|ZP_01262532.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01] gi|260366278|ref|ZP_05778734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] gi|260898293|ref|ZP_05906789.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|260901514|ref|ZP_05909909.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|262394812|ref|YP_003286666.1| DNA-binding protein HU-beta [Vibrio sp. Ex25] gi|269965577|ref|ZP_06179691.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B] gi|28805907|dbj|BAC59183.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD 2210633] gi|91187846|gb|EAS74160.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01] gi|262338406|gb|ACY52201.1| DNA-binding protein HU-beta [Vibrio sp. Ex25] gi|269829802|gb|EEZ84037.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B] gi|308088436|gb|EFO38131.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|308110870|gb|EFO48410.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|308114045|gb|EFO51585.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] gi|328473323|gb|EGF44171.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 10329] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALK 86 >gi|84387738|ref|ZP_00990754.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|86148519|ref|ZP_01066807.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|148977891|ref|ZP_01814444.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] gi|84377421|gb|EAP94288.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|85833710|gb|EAQ51880.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|145962837|gb|EDK28109.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+SI++ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPGFKAGKALK 86 >gi|189465271|ref|ZP_03014056.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM 17393] gi|189437545|gb|EDV06530.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM 17393] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 44/80 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GL++ DS + + I + G+ + + F TF V ++ +R+G Sbjct: 1 MNKSELISAMAAESGLTKADSKKALDAFMASITKALKAGDKVSLVGFGTFAVSERAARLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 N T Q + I ++V FK Sbjct: 61 INPSTKQSITIPAKKVAKFK 80 >gi|188997158|ref|YP_001931409.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237756500|ref|ZP_04585032.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense SS-5] gi|188932225|gb|ACD66855.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237691348|gb|EEP60424.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense SS-5] Length = 98 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 6/93 (6%) Query: 7 RSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHVKQKG 60 R+D+V I++ + L +K+ V F+ I D G+ + IS F TF +K++ Sbjct: 3 RADIVNKIARNEKITLDKKEIATIVNETFDLISDYLTNDIHEGKKVMISGFGTFVIKKRK 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 S++GRN +T +E I R + FK +LKK++ Sbjct: 63 SKIGRNPKTGEEKLIPDRLGITFKPGKLLKKKV 95 >gi|15896458|ref|NP_349807.1| DNA binding protein HU [Clostridium acetobutylicum ATCC 824] gi|15026283|gb|AAK81147.1|AE007817_1 DNA binding protein HU [Clostridium acetobutylicum ATCC 824] gi|325510616|gb|ADZ22252.1| DNA binding protein HU [Clostridium acetobutylicum EA 2018] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ SIS++ L++KD+ + + ++ + E +++ F TF +++ R G Sbjct: 1 MNKAELITSISEKSKLTKKDAEVALKAFIESVEETLEKHEKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ +E+ I V VFKA K+R+ Sbjct: 61 RNPRSKEEIVIPASTVPVFKAGKEFKERV 89 >gi|294789887|ref|ZP_06755113.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453] gi|294482177|gb|EFG29878.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K+I+ E GL++ + + L + D G + I F F+V ++ R+G Sbjct: 1 MNKAELIKTIATESGLTQTQANDALNALCKVVIDELSIGGEVNIVGFGRFYVAERAERMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T++ V I V FKA LK + Sbjct: 61 RNPKTSKPVMIPATCVAKFKAGKTLKDAV 89 >gi|283956256|ref|ZP_06373736.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336] gi|283791976|gb|EFC30765.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336] Length = 98 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + +K+ RV FK LK+ + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >gi|328676006|gb|AEB28681.1| DNA-binding protein HU-beta [Francisella cf. novicida 3523] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKSGDSVTLVGFGTFQVKERSPREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI +V FKA LK + Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAV 89 >gi|238751009|ref|ZP_04612505.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380] gi|238710699|gb|EEQ02921.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDEVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89 >gi|325125586|gb|ADY84916.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 80 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 41/69 (59%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++LV ++ + L++KD + V +F I + +GE +++ F TF V+ G+R GRN Sbjct: 4 KAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRHLGARKGRN 63 Query: 67 LQTNQEVKI 75 QT E +I Sbjct: 64 PQTGAENEI 72 >gi|23009809|ref|ZP_00050720.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 99 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 51/90 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +S+LV +I+ + LS+ D+ + + + +S +GEA+K++ + ++ +R Sbjct: 8 SLNKSELVSAIASKADLSKADAEKALNAFQEVLIESLGKGEAVKVTGLLSVERVERAART 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I V A S+LKK + Sbjct: 68 GRNPRTGEEISIPAGYGVKISAGSLLKKAV 97 >gi|323697944|ref|ZP_08109856.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323457876|gb|EGB13741.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++S++ + ++T+ V + + ++ +RG+ ++I F +F +K G Sbjct: 1 MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V++ P+++ F+ LK+ I Sbjct: 61 RNPKTGTVVQVRPKKLPFFRPGKELKEYI 89 >gi|169824180|ref|YP_001691791.1| DNA binding protein [Finegoldia magna ATCC 29328] gi|302380836|ref|ZP_07269299.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3] gi|303234932|ref|ZP_07321557.1| DNA-binding protein HU [Finegoldia magna BVS033A4] gi|167830985|dbj|BAG07901.1| DNA binding protein [Finegoldia magna ATCC 29328] gi|302311331|gb|EFK93349.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3] gi|302494050|gb|EFL53831.1| DNA-binding protein HU [Finegoldia magna BVS033A4] Length = 96 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+K+ LS+ +S R + + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93 RN + +E ++I VFKA LK+ + Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90 >gi|167569600|ref|ZP_02362474.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia oklahomensis C6786] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+++ LS+ + R + L + ++ RG A+ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQRGGAVTLVGFGTFEVGKRAARGG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 R+ +T ++I V F+A LK Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALK 86 >gi|166033174|ref|ZP_02236003.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC 27755] gi|166027531|gb|EDR46288.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC 27755] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + +S+KDS + + + + + +G I++ F TF ++ +R G Sbjct: 1 MNKTELVAAIADKAEISKKDSEKALKAFVDVVTEELKKGHKIQLVGFGTFETSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + +KI+ + FKA LK Sbjct: 61 RNPSTGETMKIEACKAPKFKAGKALK 86 >gi|22124937|ref|NP_668360.1| transcriptional regulator HU subunit beta [Yersinia pestis KIM 10] gi|45440626|ref|NP_992165.1| transcriptional regulator HU subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51595312|ref|YP_069503.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108808640|ref|YP_652556.1| transcriptional regulator HU subunit beta [Yersinia pestis Antiqua] gi|108811101|ref|YP_646868.1| transcriptional regulator HU subunit beta [Yersinia pestis Nepal516] gi|145600049|ref|YP_001164125.1| transcriptional regulator HU subunit beta [Yersinia pestis Pestoides F] gi|149365000|ref|ZP_01887035.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125] gi|153946890|ref|YP_001402049.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis IP 31758] gi|162421829|ref|YP_001607417.1| transcriptional regulator HU subunit beta [Yersinia pestis Angola] gi|165926604|ref|ZP_02222436.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. F1991016] gi|165935858|ref|ZP_02224428.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|166011019|ref|ZP_02231917.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. E1979001] gi|166212951|ref|ZP_02238986.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. B42003004] gi|167398669|ref|ZP_02304193.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421618|ref|ZP_02313371.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423381|ref|ZP_02315134.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025448|ref|YP_001721953.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894329|ref|YP_001871441.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218930184|ref|YP_002348059.1| transcriptional regulator HU subunit beta [Yersinia pestis CO92] gi|229838758|ref|ZP_04458917.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896088|ref|ZP_04511258.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Pestoides A] gi|229899326|ref|ZP_04514469.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901330|ref|ZP_04516452.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Nepal516] gi|270489516|ref|ZP_06206590.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|21957776|gb|AAM84611.1|AE013706_6 DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pestis KIM 10] gi|45435483|gb|AAS61042.1| DNA-binding protein HU-beta [Yersinia pestis biovar Microtus str. 91001] gi|51588594|emb|CAH20202.1| DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pseudotuberculosis IP 32953] gi|108774749|gb|ABG17268.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis Nepal516] gi|108780553|gb|ABG14611.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis Antiqua] gi|115348795|emb|CAL21749.1| DNA-binding protein HU-beta [Yersinia pestis CO92] gi|145211745|gb|ABP41152.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis Pestoides F] gi|149291413|gb|EDM41487.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125] gi|152958385|gb|ABS45846.1| DNA-binding protein HU-beta [Yersinia pseudotuberculosis IP 31758] gi|162354644|gb|ABX88592.1| DNA-binding protein HU-beta [Yersinia pestis Angola] gi|165916003|gb|EDR34610.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|165921532|gb|EDR38729.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. F1991016] gi|165990019|gb|EDR42320.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. E1979001] gi|166205738|gb|EDR50218.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. B42003004] gi|166960537|gb|EDR56558.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051173|gb|EDR62581.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057551|gb|EDR67297.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751982|gb|ACA69500.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis YPIII] gi|186697355|gb|ACC87984.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis PB1/+] gi|229681259|gb|EEO77353.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Nepal516] gi|229687728|gb|EEO79801.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695124|gb|EEO85171.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701011|gb|EEO89040.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Pestoides A] gi|270338020|gb|EFA48797.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|320016340|gb|ADV99911.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIITSVTESLKEGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89 >gi|322419661|ref|YP_004198884.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320126048|gb|ADW13608.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ + LS K + V +F + ++ + G+ I+I F +F VK+ + G Sbjct: 1 MNKSELIESLAAKKALSFKKAEEVVNAVFASMTEALLSGDRIEIRGFGSFVVKEYDAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89 >gi|182679839|ref|YP_001833985.1| integration host factor, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|226709769|sp|B2IKV6|IHFB_BEII9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|182635722|gb|ACB96496.1| integration host factor, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 97 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L +D + V + +EI + RG+ +++ F F VK++ +R+ Sbjct: 1 MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK +++R+ Sbjct: 61 GRNPRTGAHVPVEEKSVPFFKTGKEMRERL 90 >gi|85708103|ref|ZP_01039169.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1] gi|85689637|gb|EAQ29640.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ GL++ D+ V +F+ I + G+ +++ F TF V ++ + +G Sbjct: 1 MNKNDLISAVAENSGLTKSDAANAVEGVFDAIQKALADGDEVRLVGFGTFAVAKRKASMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMPIKASNQPKFKAGKGLKDAV 89 >gi|163785054|ref|ZP_02179777.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879681|gb|EDP73462.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1] Length = 97 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 7/91 (7%) Query: 5 ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59 +T+ D+V+ I +K+ L++KD V LF+ I + G+ I+IS F TF VK++ Sbjct: 1 MTKIDIVEWILDNKDINLTKKDIKIIVDELFSLIENELKNGQDGKKIQISGFGTFFVKKR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRV-VVFKASSIL 89 ++VGRN +TN+E KI P R+ V FK L Sbjct: 61 KAKVGRNPRTNEE-KIVPERLGVSFKPGKKL 90 >gi|157373740|ref|YP_001472340.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316114|gb|ABV35212.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ ++ R + + + ++ G+ I I F +F + +R G Sbjct: 1 MNKTELVAKIAENAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86 >gi|26989027|ref|NP_744452.1| histone family protein DNA-binding protein [Pseudomonas putida KT2440] gi|148548674|ref|YP_001268776.1| histone family protein DNA-binding protein [Pseudomonas putida F1] gi|14028717|gb|AAK52475.1|AF345628_1 histone-like protein HU form B [Pseudomonas putida] gi|24983851|gb|AAN67916.1|AE016424_2 DNA-binding protein HU-beta [Pseudomonas putida KT2440] gi|148512732|gb|ABQ79592.1| bacterial nucleoid protein HU beta subunit [Pseudomonas putida F1] gi|313499611|gb|ADR60977.1| HupB [Pseudomonas putida BIRD-1] Length = 90 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + +G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI+ +V FKA LK + Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAV 89 >gi|218667767|ref|YP_002425678.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519980|gb|ACK80566.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 1 MSKTITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 MS+ + DL KS+ + GL+ + + V L I + G ++I F TF Sbjct: 1 MSEISGKKDLAKSLV-DAGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIH 59 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 + +R+GRN QT E++I R+V+ FKAS Sbjct: 60 RAARMGRNPQTGGELEIPERKVLTFKAS 87 >gi|254480378|ref|ZP_05093625.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148] gi|214038961|gb|EEB79621.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ D+ R + + + + D+ +G+ + + F TF VK + +R GRN QT ++I V Sbjct: 17 SKADAGRALDAVVDSVTDALKKGDQVSLVGFGTFSVKHRSARTGRNPQTGAAIEIKASEV 76 Query: 81 VVFKASSILKKRI 93 FKA LK + Sbjct: 77 PSFKAGKALKDAV 89 >gi|90410785|ref|ZP_01218800.1| putative bacterial nucleoid DNA-binding protein [Photobacterium profundum 3TCK] gi|90328416|gb|EAS44714.1| putative bacterial nucleoid DNA-binding protein [Photobacterium profundum 3TCK] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + + + G+ + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIQIAAAKVPGFKPGKALKDSV 89 >gi|88798959|ref|ZP_01114540.1| integration host factor beta subunit [Reinekea sp. MED297] gi|88778186|gb|EAR09380.1| integration host factor beta subunit [Reinekea sp. MED297] Length = 101 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS +D + T+ + + + GE I+I F +F + + RV Sbjct: 6 VTKSELIERIVDRQGQLSVRDVELAIKTMLDHMAQALAEGERIEIRGFGSFSLHYRSPRV 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V+++ + V FK L++ + + + Sbjct: 66 GRNPKTGESVELEGKYVPHFKPGKELRESVNESL 99 >gi|92115364|ref|YP_575292.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] gi|91798454|gb|ABE60593.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] Length = 90 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L +I++ LS+ +++ + + +EI + +G+ + + F F V+++ +R G+N Sbjct: 3 KPELAAAIAERADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + + I + V FK LK Sbjct: 63 PQTGKPLTIPASKTVAFKPGKALK 86 >gi|85716441|ref|ZP_01047413.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A] gi|85696798|gb|EAQ34684.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A] Length = 112 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L +++++ LS+K + +T + I +G+ I+I V+++ +R Sbjct: 23 TVTLKHLAAALAEDHELSKKAAEAILTDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 82 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +E++I + V F+A+ LK+ I Sbjct: 83 GRNPATGEEIQIKASKKVAFRAAKELKEAI 112 >gi|163867319|ref|YP_001608513.1| integration host factor subunit beta [Bartonella tribocorum CIP 105476] gi|254803527|sp|A9IL25|IHFB_BART1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|161016960|emb|CAK00518.1| integration host factor beta chain [Bartonella tribocorum CIP 105476] Length = 92 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + G+ +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGDRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V +D + + FK L+ R+ Sbjct: 61 GRNPRTGEAVAVDEKWIPFFKTGKDLRDRL 90 >gi|92117746|ref|YP_577475.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14] gi|91800640|gb|ABE63015.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14] Length = 99 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L +++++ LS+K + ++ + I +GE I+I V+++ +R Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGERIRIVGLGILQVRKRAARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +E++I + V F+A+ LK+ I Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99 >gi|325972610|ref|YP_004248801.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy] gi|324027848|gb|ADY14607.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy] Length = 108 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63 +T++ +++S+ ++ GL+R D + + F E+ D + I++ F TF V+ +KG Sbjct: 6 LTKAAIIESLHEKHGLNRADIHQIIDEFFEEVKDGLKNDQVIELRGFGTFEVRTRKGREK 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN +T V ++ V +F+ LK + + + N++D Sbjct: 66 ARNPKTGAIVAVETHGVAIFRPGKELKDFVWELRDNKPVNEND 108 >gi|268590154|ref|ZP_06124375.1| integration host factor, beta subunit [Providencia rettgeri DSM 1131] gi|291314429|gb|EFE54882.1| integration host factor, beta subunit [Providencia rettgeri DSM 1131] Length = 95 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K V + + D+ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLANGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRV 90 >gi|114327968|ref|YP_745125.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] gi|114316142|gb|ABI62202.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] Length = 97 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ E L R + + V + I + R E +++ F +F V + + VG Sbjct: 1 MNKMELITAVADELELPRSRAAQAVDAVLGSIESALKRHEEVRLVGFGSFSVASRKASVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I P V FKA LK Sbjct: 61 RNPRTGEEIAIPPALSVRFKAGKTLK 86 >gi|304311293|ref|YP_003810891.1| Histone-like bacterial dna-binding protein [gamma proteobacterium HdN1] gi|301797026|emb|CBL45239.1| Histone-like bacterial dna-binding protein [gamma proteobacterium HdN1] Length = 91 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + ++R + + + D+ + E + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADIPKAQASRALDAVITSVTDALKKDEQVALVGFGTFSVKDRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++ FK LK + Sbjct: 61 RNPQTGETIDIPAAKIPSFKPGKALKDAV 89 >gi|153806286|ref|ZP_01958954.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185] gi|149130963|gb|EDM22169.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185] Length = 92 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD+ + +L +++ G I + F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTAELIGSLLSDMVQELEEGNVIAVQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ +K S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYKPSNTLKDK 90 >gi|222055458|ref|YP_002537820.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|221564747|gb|ACM20719.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 93 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ K + LSRK+S ++ +F+ + D+ GE ++I F +F ++ + +R Sbjct: 1 MTKSELIDKLVEANSVLSRKESEAIISIVFDSMSDALKSGEKVEIRGFGSFTIRARDARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + VKI ++ FK L++R+ Sbjct: 61 ARNPKSGELVKIPSKKTPFFKTGKELRERV 90 >gi|313238132|emb|CBY13230.1| unnamed protein product [Oikopleura dioica] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTR-----FVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +++L+ +I G KD+T+ + + + I + + ++I F TF VK++ Sbjct: 1 MNKAELIDAIQAALG---KDATKRAADEALEAVLSSIAKGVKKDKKVQIIGFGTFEVKKR 57 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +R GRN +T + +KI + V FKASS+LK Sbjct: 58 AARTGRNPKTGEAMKIAASKSVGFKASSVLK 88 >gi|242241106|ref|YP_002989287.1| transcriptional regulator HU subunit alpha [Dickeya dadantii Ech703] gi|242133163|gb|ACS87465.1| histone family protein DNA-binding protein [Dickeya dadantii Ech703] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F A LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVAGKALKDAV 89 >gi|90021258|ref|YP_527085.1| nucleoid protein HU subunit beta [Saccharophagus degradans 2-40] gi|89950858|gb|ABD80873.1| bacterial nucleoid protein HU beta subunit [Saccharophagus degradans 2-40] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ +S+ + R + + I ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I ++ FK LK + Sbjct: 61 RNPQTGAPIEIAAAKIPSFKPGKALKDAV 89 >gi|304415426|ref|ZP_07396077.1| HU DNA-binding transcriptional regulator alpha subunit [Candidatus Regiella insecticola LSR1] gi|304282725|gb|EFL91237.1| HU DNA-binding transcriptional regulator alpha subunit [Candidatus Regiella insecticola LSR1] Length = 141 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++++ G S+ D+ V + + I ++ GE ++I F TF ++ +R G Sbjct: 1 MNKTQLIDKVAEKIGSSKTDARAAVDAILDSITEALEEGEQMQIVGFGTFKTSKRQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I V F LK Sbjct: 61 RNPQTGAEIQIPATTVATFTVGKELK 86 >gi|168187043|ref|ZP_02621678.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund] gi|169295104|gb|EDS77237.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund] Length = 92 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 49/87 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD + + ++ + GE +++ F TF +++ R G Sbjct: 1 MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGEKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E+ I V VFKA K+ Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87 >gi|145220403|ref|YP_001131112.1| histone family protein DNA-binding protein [Prosthecochloris vibrioformis DSM 265] gi|145206567|gb|ABP37610.1| histone family protein DNA-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + L++ D+ + V N + S G+ + + F TF + R G Sbjct: 1 MSKAELVEKIAAQANLTKVDAEKSVNAFINVVTSSLKAGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + VV FK LK + Sbjct: 61 RNPQTGKTITIPAKTVVKFKPGKALKDEV 89 >gi|34539986|ref|NP_904465.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188994099|ref|YP_001928351.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] gi|34396297|gb|AAQ65364.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188593779|dbj|BAG32754.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] Length = 88 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D + +++++ L++ D+ R V + + GE I + F TF V ++ +R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + I R+VV FK S L+ Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTLE 86 >gi|225851686|ref|YP_002731919.1| integration host factor subunit beta [Brucella melitensis ATCC 23457] gi|256045945|ref|ZP_05448817.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256264801|ref|ZP_05467333.1| integration host factor subunit beta [Brucella melitensis bv. 2 str. 63/9] gi|260563226|ref|ZP_05833712.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. 16M] gi|265992355|ref|ZP_06104912.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|21362604|sp|Q8YET3|IHFB_BRUME RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803528|sp|C0RGK7|IHFB_BRUMB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|225640051|gb|ACN99964.1| integration host factor, beta subunit [Brucella melitensis ATCC 23457] gi|260153242|gb|EEW88334.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. 16M] gi|263003421|gb|EEZ15714.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263095212|gb|EEZ18881.1| integration host factor subunit beta [Brucella melitensis bv. 2 str. 63/9] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90 >gi|260913658|ref|ZP_05920134.1| integration host factor subunit beta [Pasteurella dagmatis ATCC 43325] gi|260632197|gb|EEX50372.1| integration host factor subunit beta [Pasteurella dagmatis ATCC 43325] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + K +S KD V + +++ + G+ I++ F +F + + R+ Sbjct: 1 MTKSELIERLVQKHPSISAKDVENSVKEILDQMSFALENGKRIEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90 >gi|197116588|ref|YP_002137015.1| histone-like protein [Geobacter bemidjiensis Bem] gi|253698824|ref|YP_003020013.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|197085948|gb|ACH37219.1| histone-like protein [Geobacter bemidjiensis Bem] gi|251773674|gb|ACT16255.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV++++K + + + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVEAVAKSANIPKGAAEKAVGAFISSVSGALKKGDRVTLVGFGSFEVASRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+ LK I Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAI 89 >gi|239994306|ref|ZP_04714830.1| integration host factor subunit beta [Alteromonas macleodii ATCC 27126] Length = 95 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K+ + L ++ + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLADQARHIPAKELELAIKELLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FK L++R+ Sbjct: 61 GRNPKTGETVKLDGKYVPHFKPGKELRERV 90 >gi|15641921|ref|NP_231553.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591617|ref|ZP_01678865.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80] gi|121727834|ref|ZP_01680901.1| DNA-binding protein HU-beta [Vibrio cholerae V52] gi|147673385|ref|YP_001217452.1| DNA-binding protein HU-beta [Vibrio cholerae O395] gi|153820106|ref|ZP_01972773.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457] gi|153823843|ref|ZP_01976510.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|153827659|ref|ZP_01980326.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2] gi|183179757|ref|ZP_02957968.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3] gi|227082049|ref|YP_002810600.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2] gi|229507985|ref|ZP_04397490.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286] gi|229511778|ref|ZP_04401257.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|229515305|ref|ZP_04404765.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21] gi|229518915|ref|ZP_04408358.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|229521841|ref|ZP_04411258.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80] gi|229523939|ref|ZP_04413344.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426] gi|229529055|ref|ZP_04418445.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)] gi|229607531|ref|YP_002878179.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236] gi|254286720|ref|ZP_04961674.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226] gi|254849007|ref|ZP_05238357.1| DNA-binding protein HU-beta [Vibrio cholerae MO10] gi|255745322|ref|ZP_05419271.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101] gi|258621305|ref|ZP_05716339.1| DNA-binding protein HU-beta [Vibrio mimicus VM573] gi|258625371|ref|ZP_05720268.1| DNA-binding protein HU-beta [Vibrio mimicus VM603] gi|262156046|ref|ZP_06029166.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1] gi|262166049|ref|ZP_06033786.1| DNA-binding protein HU-beta [Vibrio mimicus VM223] gi|262167881|ref|ZP_06035581.1| DNA-binding protein HU-beta [Vibrio cholerae RC27] gi|262171086|ref|ZP_06038764.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451] gi|262404272|ref|ZP_06080827.1| DNA-binding protein HU-beta [Vibrio sp. RC586] gi|297579437|ref|ZP_06941365.1| DNA-binding protein HU-beta [Vibrio cholerae RC385] gi|298498043|ref|ZP_07007850.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757] gi|14194651|sp|Q9KQS9|DBHB_VIBCH RecName: Full=DNA-binding protein HU-beta gi|9656454|gb|AAF95067.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546530|gb|EAX56738.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80] gi|121629870|gb|EAX62284.1| DNA-binding protein HU-beta [Vibrio cholerae V52] gi|126509348|gb|EAZ71942.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457] gi|126518640|gb|EAZ75863.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|146315268|gb|ABQ19807.1| DNA-binding protein HU-beta [Vibrio cholerae O395] gi|149737865|gb|EDM52770.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2] gi|150423147|gb|EDN15094.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226] gi|183013168|gb|EDT88468.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3] gi|227009937|gb|ACP06149.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2] gi|227013817|gb|ACP10027.1| DNA-binding protein HU-beta [Vibrio cholerae O395] gi|229332829|gb|EEN98315.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)] gi|229337520|gb|EEO02537.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426] gi|229340766|gb|EEO05771.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80] gi|229343604|gb|EEO08579.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|229348010|gb|EEO12969.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21] gi|229351743|gb|EEO16684.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|229355490|gb|EEO20411.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286] gi|229370186|gb|ACQ60609.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236] gi|254844712|gb|EET23126.1| DNA-binding protein HU-beta [Vibrio cholerae MO10] gi|255737152|gb|EET92548.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101] gi|258582362|gb|EEW07214.1| DNA-binding protein HU-beta [Vibrio mimicus VM603] gi|258586693|gb|EEW11408.1| DNA-binding protein HU-beta [Vibrio mimicus VM573] gi|261892162|gb|EEY38148.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451] gi|262023608|gb|EEY42309.1| DNA-binding protein HU-beta [Vibrio cholerae RC27] gi|262025765|gb|EEY44433.1| DNA-binding protein HU-beta [Vibrio mimicus VM223] gi|262030224|gb|EEY48868.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1] gi|262349304|gb|EEY98442.1| DNA-binding protein HU-beta [Vibrio sp. RC586] gi|297537031|gb|EFH75864.1| DNA-binding protein HU-beta [Vibrio cholerae RC385] gi|297542376|gb|EFH78426.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757] gi|327484463|gb|AEA78870.1| DNA-binding protein HU-beta [Vibrio cholerae LMA3894-4] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +V FKA LK Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALK 86 >gi|284924092|emb|CBG37191.1| DNA-binding protein HU-alpha [Escherichia coli 042] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI V F + LK Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 >gi|259906948|ref|YP_002647304.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96] gi|224962570|emb|CAX54025.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96] gi|283476742|emb|CAY72577.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae DSM 12163] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V Q+ R+G Sbjct: 1 MNKTQLIDIIADKADLSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F + LK+ + Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAV 89 >gi|119503318|ref|ZP_01625402.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma proteobacterium HTCC2080] gi|119460964|gb|EAW42055.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma proteobacterium HTCC2080] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E LS+ + R + N I + + + + + F TF VK + +R G Sbjct: 1 MNKNELVDAIAEEADLSKASAGRALDAAINAITGALTKQDTVSLVGFGTFSVKHRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + ++I FKA LK + Sbjct: 61 RNPRSGETIQIKASNAPGFKAGKALKDAV 89 >gi|87199239|ref|YP_496496.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87134920|gb|ABD25662.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL I+ GLS+ D+ + V ++F I D+A +GE + ++ F F VK +R G Sbjct: 1 MNNSDLADIIAANHGLSKADARKAVDSVFAAIADAAAKGEEVSLNGFGKFKVKNTPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T ++I + F A+ +K ++ Sbjct: 61 RNPSTGATIQIAASNKLTFAAAKAVKDKL 89 >gi|91787441|ref|YP_548393.1| histone-like protein DNA-binding protein [Polaromonas sp. JS666] gi|91696666|gb|ABE43495.1| HU family DNA-binding protein [Polaromonas sp. JS666] Length = 103 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L++SI+ E LS+ + R + L + I + +G+A+++ F TF ++ +R G Sbjct: 1 MNRAELIESIAAETDLSKAATGRVLDVLIDTIQKTVKKGDAVQLVGFGTFKSTKRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T + VKI V F A + K Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFK 86 >gi|270263573|ref|ZP_06191842.1| histone family protein DNA-binding protein [Serratia odorifera 4Rx13] gi|270042457|gb|EFA15552.1| histone family protein DNA-binding protein [Serratia odorifera 4Rx13] Length = 101 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F +F V+++ +R G Sbjct: 12 VNKSQLIDKIAAGADISKAAAGRALDAVIASVTESLKEGDDVALVGFGSFTVRERSARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 72 RNPQTGKEINIAAAKVPAFRAGKALKDAV 100 >gi|209523054|ref|ZP_03271611.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] gi|209496641|gb|EDZ96939.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] Length = 98 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ S + G+++K + ++ + I D+ GE + + F +F + + +R G Sbjct: 1 MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVAEGEKVTLVGFGSFEARHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T Q + I V F A K+R+ ++ Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANE 92 >gi|297587538|ref|ZP_06946182.1| DNA-binding protein HU [Finegoldia magna ATCC 53516] gi|297574227|gb|EFH92947.1| DNA-binding protein HU [Finegoldia magna ATCC 53516] Length = 96 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+K+ LS+ +S R + + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKSELLTSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93 RN + +E ++I VFKA LK+ + Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90 >gi|153952810|ref|YP_001393575.1| Hup [Clostridium kluyveri DSM 555] gi|219853475|ref|YP_002470597.1| hypothetical protein CKR_0132 [Clostridium kluyveri NBRC 12016] gi|146345691|gb|EDK32227.1| Hup [Clostridium kluyveri DSM 555] gi|219567199|dbj|BAH05183.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+++ L++KD+ + + ++ +GE +++ F TF +++ +RVG Sbjct: 1 MNKSELIVGIAEKSKLTKKDAEAALKGFIESVEETLEKGEKVQLVGFGTFETRKRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I V VFKA + ++ Sbjct: 61 RNPRTKEVINIPESTVPVFKAGKEFRDKV 89 >gi|78222818|ref|YP_384565.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78194073|gb|ABB31840.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 96 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K L++ + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVDAVAKSAELTKAAADKAVNGVIEAVTAALKKGDKVTLVGFGSFEVATRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI +V F+ LK Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALK 86 >gi|149928275|ref|ZP_01916518.1| Integration host factor, beta subunit [Limnobacter sp. MED105] gi|149823004|gb|EDM82246.1| Integration host factor, beta subunit [Limnobacter sp. MED105] Length = 98 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + K F L +D+ V ++ + + + G+ I+I F +F + ++ RV Sbjct: 1 MTKSELINQLVKRFPKLPVRDTDFAVKSILDSMTQALAEGQRIEIRGFGSFSLTRRPQRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + +RV FK L++R+ Sbjct: 61 GRNPKSGEQVVVPEKRVPHFKPGKELRERV 90 >gi|328948102|ref|YP_004365439.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] gi|328448426|gb|AEB14142.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] Length = 92 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K GL +KD+ + + + +G +++ F TF V ++ +R G Sbjct: 1 MNKAELIEKMAKSTGLPKKDAESALKSFLEIVSKELEKGHDVQLIGFGTFTVGKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + +KI + FK LK R+ Sbjct: 61 RNPATGETIKIAASKTPKFKPGKALKDRL 89 >gi|296284719|ref|ZP_06862717.1| histone-like protein [Citromicrobium bathyomarinum JL354] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+ D++ V +F+ I + G+ +++ F TF V ++ + G Sbjct: 1 MNKNELIGTVAESCGLSKSDASNAVEGVFDAIQKALANGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I FKA LK + Sbjct: 61 RNPRTGEPMEIKASNQPKFKAGKGLKDAV 89 >gi|322417739|ref|YP_004196962.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320124126|gb|ADW11686.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV++++K + + + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVEAVAKSANIPKAAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +V F+ LK I Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAI 89 >gi|222147331|ref|YP_002548288.1| integration host factor subunit beta [Agrobacterium vitis S4] gi|254803526|sp|B9JZH2|IHFB_AGRVS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|221734321|gb|ACM35284.1| integration host factor beta subunit [Agrobacterium vitis S4] Length = 103 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVELRGFGAFSVKNRPSRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V ++ + V FK L++R+ M Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGM 94 >gi|52424240|ref|YP_087377.1| HimA protein [Mannheimia succiniciproducens MBEL55E] gi|52306292|gb|AAU36792.1| HimA protein [Mannheimia succiniciproducens MBEL55E] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S G+++++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLDAITASLKAGDSVQLIGFGTFKVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V F + LK + Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAV 89 >gi|123443339|ref|YP_001007313.1| transcriptional regulator HU subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238759259|ref|ZP_04620426.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236] gi|238764857|ref|ZP_04625798.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638] gi|238783606|ref|ZP_04627627.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970] gi|238788011|ref|ZP_04631807.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641] gi|238791434|ref|ZP_04635072.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909] gi|238795539|ref|ZP_04639054.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969] gi|332160752|ref|YP_004297329.1| transcriptional regulator HU subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122090300|emb|CAL13166.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238696964|gb|EEP89740.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638] gi|238702546|gb|EEP95096.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236] gi|238715484|gb|EEQ07475.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970] gi|238720658|gb|EEQ12459.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969] gi|238723959|gb|EEQ15603.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641] gi|238729050|gb|EEQ20566.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909] gi|318604632|emb|CBY26130.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp. palearctica Y11] gi|325664982|gb|ADZ41626.1| transcriptional regulator HU subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859946|emb|CBX70275.1| DNA-binding protein HU-beta [Yersinia enterocolitica W22703] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89 >gi|330959797|gb|EGH60057.1| putative DNA-binding protein HU [Pseudomonas syringae pv. maculicola str. ES4326] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V +++++ GL++ D+ R V + I D+ +G+A+ F F VKQ R G Sbjct: 1 MNKGEFVDAVAEKAGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + I + F A LK + Sbjct: 61 RNPSTGASITIAAAKKPHFAAGKSLKDAL 89 >gi|116749538|ref|YP_846225.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116698602|gb|ABK17790.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ G+++ + + V + + GE + + F TF V + R G Sbjct: 1 MTKADLVSKIAGAGGITKAQAEKAVDGFVAAVSQALSTGEKVTLVGFGTFSVGSRSQREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++KI +VV FK L ++ Sbjct: 61 RNPRTGEKIKIPASKVVKFKPGKSLSDKV 89 >gi|266619816|ref|ZP_06112751.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479] gi|288868604|gb|EFD00903.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V G I++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVSEELVNGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN ++ + + I + FKA LK Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALK 86 >gi|241663131|ref|YP_002981491.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|240865158|gb|ACS62819.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V ++ SR G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I+ +V FK LK Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALK 86 >gi|283852806|ref|ZP_06370069.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|283571798|gb|EFC19795.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++D++ I G++ K ++ + + + I DS V GEA+ ++ F TF V ++ +R Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQDSLVSGEALTLTGFGTFKVSERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GR+ +T + I + V F LK + Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAV 90 >gi|312113689|ref|YP_004011285.1| integration host factor subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311218818|gb|ADP70186.1| integration host factor, beta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 110 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ L +D + V +F EI + +G+ +++ F F VK + +RV Sbjct: 1 MIKSELIEKLAATNPHLMHRDVEKIVNVIFEEITGALTKGDRVELRGFGAFSVKHRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V + + V FK L+ R+ Sbjct: 61 GRNPRTGDQVSVPEKFVPYFKTGKELRIRL 90 >gi|218702635|ref|YP_002410264.1| transcriptional regulator HU subunit alpha [Escherichia coli IAI39] gi|218372621|emb|CAR20496.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli IAI39] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKNQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI V F + LK Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 >gi|59801191|ref|YP_207903.1| DbhA [Neisseria gonorrhoeae FA 1090] gi|194098662|ref|YP_002001724.1| DbhA [Neisseria gonorrhoeae NCCP11945] gi|239998975|ref|ZP_04718899.1| DbhA [Neisseria gonorrhoeae 35/02] gi|240014114|ref|ZP_04721027.1| DbhA [Neisseria gonorrhoeae DGI18] gi|240016549|ref|ZP_04723089.1| DbhA [Neisseria gonorrhoeae FA6140] gi|240080673|ref|ZP_04725216.1| DbhA [Neisseria gonorrhoeae FA19] gi|240112961|ref|ZP_04727451.1| DbhA [Neisseria gonorrhoeae MS11] gi|240115715|ref|ZP_04729777.1| DbhA [Neisseria gonorrhoeae PID18] gi|240118011|ref|ZP_04732073.1| DbhA [Neisseria gonorrhoeae PID1] gi|240121676|ref|ZP_04734638.1| DbhA [Neisseria gonorrhoeae PID24-1] gi|240123565|ref|ZP_04736521.1| DbhA [Neisseria gonorrhoeae PID332] gi|240125747|ref|ZP_04738633.1| DbhA [Neisseria gonorrhoeae SK-92-679] gi|240128269|ref|ZP_04740930.1| DbhA [Neisseria gonorrhoeae SK-93-1035] gi|254493764|ref|ZP_05106935.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291] gi|260440472|ref|ZP_05794288.1| DbhA [Neisseria gonorrhoeae DGI2] gi|268594821|ref|ZP_06128988.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268596797|ref|ZP_06130964.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268599038|ref|ZP_06133205.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11] gi|268601391|ref|ZP_06135558.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18] gi|268603720|ref|ZP_06137887.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1] gi|268682191|ref|ZP_06149053.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332] gi|268684342|ref|ZP_06151204.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679] gi|268686663|ref|ZP_06153525.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035] gi|291043776|ref|ZP_06569492.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|293399057|ref|ZP_06643222.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62] gi|59718086|gb|AAW89491.1| putative DNA-binding protein Hu [Neisseria gonorrhoeae FA 1090] gi|193933952|gb|ACF29776.1| DbhA [Neisseria gonorrhoeae NCCP11945] gi|226512804|gb|EEH62149.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291] gi|268548210|gb|EEZ43628.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268550585|gb|EEZ45604.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268583169|gb|EEZ47845.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11] gi|268585522|gb|EEZ50198.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18] gi|268587851|gb|EEZ52527.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1] gi|268622475|gb|EEZ54875.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332] gi|268624626|gb|EEZ57026.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679] gi|268626947|gb|EEZ59347.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035] gi|291012239|gb|EFE04228.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|291610471|gb|EFF39581.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62] Length = 89 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E +S+ + + + N + ++ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEADISKAAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTLKFRAGKALK 86 >gi|153854753|ref|ZP_01995987.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814] gi|149752660|gb|EDM62591.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + LS+KDS + + + + + + +++ F TF V + R G Sbjct: 1 MNKTELIAAIADQAELSKKDSEKALKAFIDVVTEELKKEHKVQVVGFGTFEVSMRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + FKA LK I Sbjct: 61 RNPQTGETMKIAACKAPKFKAGKALKDAI 89 >gi|167771525|ref|ZP_02443578.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM 17241] gi|167666165|gb|EDS10295.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM 17241] Length = 92 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++++ GLS+KDS + V + I ++ G+ + + F TF K + R G Sbjct: 1 MTKAELITAVAEKSGLSKKDSEKAVGAIVETITEALKAGDKVALVGFGTFETKHRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + + I V F A LK Sbjct: 61 INPITQKPITIAAATVPAFSAGKALK 86 >gi|332878124|ref|ZP_08445853.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683862|gb|EGJ56730.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 96 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + GL + + V +E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKAEIVSKISDKSGLDKNEVQLIVENFMDEVINSLKDGQNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N +KI + FK + + + D+++ Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVDTVKDNVK 94 >gi|291615778|ref|YP_003518520.1| HupA [Pantoea ananatis LMG 20103] gi|329296840|ref|ZP_08254176.1| transcriptional regulator HU subunit alpha [Plautia stali symbiont] gi|291150808|gb|ADD75392.1| HupA [Pantoea ananatis LMG 20103] gi|327396044|dbj|BAK13466.1| DNA-binding protein HU-alpha HupA [Pantoea ananatis AJ13355] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|256112658|ref|ZP_05453579.1| integration host factor subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265994098|ref|ZP_06106655.1| integration host factor subunit beta [Brucella melitensis bv. 3 str. Ether] gi|262765079|gb|EEZ11000.1| integration host factor subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPTRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90 >gi|54309795|ref|YP_130815.1| putative nucleoid DNA-binding protein [Photobacterium profundum SS9] gi|46914233|emb|CAG21013.1| putative bacterial nucleoid DNA-binding protein [Photobacterium profundum SS9] Length = 103 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + + + G+ + + F TF V+ + +R G Sbjct: 13 VNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRDRAARTG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I +V FK LK + Sbjct: 73 RNPQTGEEIQIAAAKVPGFKPGKALKDSV 101 >gi|54310488|ref|YP_131508.1| putative DNA-binding protein HU-alpha [Photobacterium profundum SS9] gi|46914931|emb|CAG21706.1| putative DNA-binding protein HU-alpha [Photobacterium profundum SS9] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDQIAEKADLSKAQAKLALESTLEGITDALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT QE++I V F + LK Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALK 86 >gi|23501064|ref|NP_697191.1| integration host factor subunit beta [Brucella suis 1330] gi|148559718|ref|YP_001258186.1| integration host factor subunit beta [Brucella ovis ATCC 25840] gi|153007510|ref|YP_001368725.1| integration host factor subunit beta [Ochrobactrum anthropi ATCC 49188] gi|161618141|ref|YP_001592028.1| integration host factor subunit beta [Brucella canis ATCC 23365] gi|163842423|ref|YP_001626827.1| integration host factor subunit beta [Brucella suis ATCC 23445] gi|254700962|ref|ZP_05162790.1| integration host factor subunit beta [Brucella suis bv. 5 str. 513] gi|254705332|ref|ZP_05167160.1| integration host factor subunit beta [Brucella suis bv. 3 str. 686] gi|254707154|ref|ZP_05168982.1| integration host factor subunit beta [Brucella pinnipedialis M163/99/10] gi|254709302|ref|ZP_05171113.1| integration host factor subunit beta [Brucella pinnipedialis B2/94] gi|254713275|ref|ZP_05175086.1| integration host factor subunit beta [Brucella ceti M644/93/1] gi|254716372|ref|ZP_05178183.1| integration host factor subunit beta [Brucella ceti M13/05/1] gi|254718369|ref|ZP_05180180.1| integration host factor subunit beta [Brucella sp. 83/13] gi|256030825|ref|ZP_05444439.1| integration host factor subunit beta [Brucella pinnipedialis M292/94/1] gi|256060295|ref|ZP_05450468.1| integration host factor subunit beta [Brucella neotomae 5K33] gi|256158850|ref|ZP_05456707.1| integration host factor subunit beta [Brucella ceti M490/95/1] gi|256254231|ref|ZP_05459767.1| integration host factor subunit beta [Brucella ceti B1/94] gi|256368617|ref|YP_003106123.1| integration host factor beta subunit [Brucella microti CCM 4915] gi|260169729|ref|ZP_05756540.1| integration host factor subunit beta [Brucella sp. F5/99] gi|260567209|ref|ZP_05837679.1| integration host factor subunit beta [Brucella suis bv. 4 str. 40] gi|261218154|ref|ZP_05932435.1| integration host factor subunit beta [Brucella ceti M13/05/1] gi|261221380|ref|ZP_05935661.1| integration host factor subunit beta [Brucella ceti B1/94] gi|261314632|ref|ZP_05953829.1| integration host factor subunit beta [Brucella pinnipedialis M163/99/10] gi|261316811|ref|ZP_05956008.1| integration host factor subunit beta [Brucella pinnipedialis B2/94] gi|261320998|ref|ZP_05960195.1| integration host factor subunit beta [Brucella ceti M644/93/1] gi|261324267|ref|ZP_05963464.1| integration host factor subunit beta [Brucella neotomae 5K33] gi|261751480|ref|ZP_05995189.1| integration host factor subunit beta [Brucella suis bv. 5 str. 513] gi|261756043|ref|ZP_05999752.1| integration host factor subunit beta [Brucella suis bv. 3 str. 686] gi|261759267|ref|ZP_06002976.1| integration host factor subunit beta [Brucella sp. F5/99] gi|265983330|ref|ZP_06096065.1| integration host factor subunit beta [Brucella sp. 83/13] gi|265987880|ref|ZP_06100437.1| integration host factor subunit beta [Brucella pinnipedialis M292/94/1] gi|265997341|ref|ZP_06109898.1| integration host factor subunit beta [Brucella ceti M490/95/1] gi|306839600|ref|ZP_07472404.1| integration host factor, beta subunit [Brucella sp. NF 2653] gi|306844421|ref|ZP_07477011.1| integration host factor, beta subunit [Brucella sp. BO1] gi|38258168|sp|Q8G304|IHFB_BRUSU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918542|sp|A5VN89|IHFB_BRUO2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918556|sp|A6WV92|IHFB_OCHA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045033|sp|A9M798|IHFB_BRUC2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045034|sp|B0CIR1|IHFB_BRUSI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|23346931|gb|AAN29106.1| integration host factor, beta subunit [Brucella suis 1330] gi|148370975|gb|ABQ60954.1| integration host factor, beta subunit [Brucella ovis ATCC 25840] gi|151559398|gb|ABS12896.1| integration host factor, beta subunit [Ochrobactrum anthropi ATCC 49188] gi|161334952|gb|ABX61257.1| integration host factor, beta subunit [Brucella canis ATCC 23365] gi|163673146|gb|ABY37257.1| integration host factor, beta subunit [Brucella suis ATCC 23445] gi|255998775|gb|ACU47174.1| integration host factor beta subunit [Brucella microti CCM 4915] gi|260156727|gb|EEW91807.1| integration host factor subunit beta [Brucella suis bv. 4 str. 40] gi|260919964|gb|EEX86617.1| integration host factor subunit beta [Brucella ceti B1/94] gi|260923243|gb|EEX89811.1| integration host factor subunit beta [Brucella ceti M13/05/1] gi|261293688|gb|EEX97184.1| integration host factor subunit beta [Brucella ceti M644/93/1] gi|261296034|gb|EEX99530.1| integration host factor subunit beta [Brucella pinnipedialis B2/94] gi|261300247|gb|EEY03744.1| integration host factor subunit beta [Brucella neotomae 5K33] gi|261303658|gb|EEY07155.1| integration host factor subunit beta [Brucella pinnipedialis M163/99/10] gi|261739251|gb|EEY27247.1| integration host factor subunit beta [Brucella sp. F5/99] gi|261741233|gb|EEY29159.1| integration host factor subunit beta [Brucella suis bv. 5 str. 513] gi|261745796|gb|EEY33722.1| integration host factor subunit beta [Brucella suis bv. 3 str. 686] gi|262551809|gb|EEZ07799.1| integration host factor subunit beta [Brucella ceti M490/95/1] gi|264660077|gb|EEZ30338.1| integration host factor subunit beta [Brucella pinnipedialis M292/94/1] gi|264661922|gb|EEZ32183.1| integration host factor subunit beta [Brucella sp. 83/13] gi|306275234|gb|EFM56984.1| integration host factor, beta subunit [Brucella sp. BO1] gi|306405298|gb|EFM61573.1| integration host factor, beta subunit [Brucella sp. NF 2653] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKELRDRL 90 >gi|118580308|ref|YP_901558.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503018|gb|ABK99500.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS+LV+ +S +S + + V +F + D+ + G+ I+I F +F + R G Sbjct: 1 MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ EV + ++ FK LK+RI+ Sbjct: 61 RNPKSGIEVSVAAKKRPFFKVGKDLKERIL 90 >gi|154246162|ref|YP_001417120.1| integration host factor subunit beta [Xanthobacter autotrophicus Py2] gi|226709820|sp|A7IHH0|IHFB_XANP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|154160247|gb|ABS67463.1| integration host factor, beta subunit [Xanthobacter autotrophicus Py2] Length = 94 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + ++ + RG+ +++ F F VK++ +RV Sbjct: 1 MIKSELVQKIAEANPHLYQRDVENIVNAILEQVASALERGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V + + V FK +++R+ Sbjct: 61 GRNPRTGKQVDVSEKTVPYFKTGKEMRERL 90 >gi|188591467|ref|YP_001796066.1| HU, DNA-binding transcriptional regulator, beta subunit [Cupriavidus taiwanensis] gi|170938862|emb|CAP63863.1| HU, DNA-binding transcriptional regulator, beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 92 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +I+ GL++ + + + + I D+ RG+A+ + F +F ++G R+ Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFK 84 RN +T +++ +D + V F+ Sbjct: 61 ARNPRTGEKITVDAAKTVKFR 81 >gi|85058119|ref|YP_453821.1| transcriptional regulator HU subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|84778639|dbj|BAE73416.1| DNA-binding protein HU-alpha (HU-2) [Sodalis glossinidius str. 'morsitans'] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF + + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKSALESTLAAITESLKEGDAVQLVGFGTFKINHRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V VF + LK + Sbjct: 61 RNPQTGKEIKIAAANVPVFVSGKALKDAV 89 >gi|94499400|ref|ZP_01305937.1| integration host factor, beta subunit [Oceanobacter sp. RED65] gi|94428154|gb|EAT13127.1| integration host factor, beta subunit [Oceanobacter sp. RED65] Length = 101 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ K +S KD V T+ + + + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERITEKHPEMSAKDIELAVKTILDTMSQALSQGERIEIRGFGSFSLHFRNPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + V + + V FK L++++ D + G Sbjct: 61 GRNPKTGEAVPLKGKYVPHFKPGKELREQVNDLVNG 96 >gi|19912729|dbj|BAB88647.1| histone-like protein [Streptococcus intermedius] gi|187936837|dbj|BAG32216.1| histone-like DNA binding protein [Streptococcus intermedius] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GRN Sbjct: 4 KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRERAARKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E+ I +V FKA LK Sbjct: 64 PQTGKEITIAASKVPAFKAGKALK 87 >gi|91977359|ref|YP_570018.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5] gi|91683815|gb|ABE40117.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5] Length = 103 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + + L I +GE I+I V+++ +R Sbjct: 14 TVTLKHLAAALAEEHELSKKQTEAILGDLVARITKHLKKGERIRIVGLGILQVRKRAART 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + ++I + V F+A+ LK+ I Sbjct: 74 GRNPATGETIQIKASKKVAFRAAKELKEAI 103 >gi|226944450|ref|YP_002799523.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226719377|gb|ACO78548.1| histone-like bacterial DNA-binding protein [Azotobacter vinelandii DJ] Length = 90 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I+ ++ FKA LK + Sbjct: 61 RNPQTGKPINIEAAKIPGFKAGKALKDAV 89 >gi|89072100|ref|ZP_01158696.1| DNA-binding protein HU [Photobacterium sp. SKA34] gi|90580382|ref|ZP_01236188.1| DNA-binding protein HU [Vibrio angustum S14] gi|89052201|gb|EAR57652.1| DNA-binding protein HU [Photobacterium sp. SKA34] gi|90438291|gb|EAS63476.1| DNA-binding protein HU [Vibrio angustum S14] Length = 91 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV I+++ ++++ +T + + I + + G + + F TF V + +R+G Sbjct: 1 MNKKDLVSHIAEQADINKEHATAALNAIVESITSALIDGNDVSLVGFGTFKVTHRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA LK ++ Sbjct: 61 RNPKTGEAIQIAASKSPTFKAGKELKAQV 89 >gi|190014801|ref|YP_001967565.1| VirN [Agrobacterium tumefaciens] gi|71849604|gb|AAZ50552.1| VirN [Agrobacterium tumefaciens] Length = 100 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L R+D+ V ++ +EI + RGE ++I F TF V+ + +R GRN V ++ + Sbjct: 17 LHRRDAENAVDSVLDEITGALERGERVEIRGFGTFVVRHRPARSGRNPLNGNAVLVEEKW 76 Query: 80 VVVFKASSILKKRI--MDDMRGRK 101 V F+A +K R+ ++ RG++ Sbjct: 77 VPFFRAGKEIKDRLNMAEEPRGKE 100 >gi|332998852|gb|EGK18447.1| DNA-binding protein HU-alpha [Shigella flexneri K-272] gi|333014312|gb|EGK33666.1| DNA-binding protein HU-alpha [Shigella flexneri K-227] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI V F + LK Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 >gi|103486981|ref|YP_616542.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] gi|98977058|gb|ABF53209.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] Length = 92 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ E L ++ R V T F+ I D G +++ F F + + SR Sbjct: 1 MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++ ++V FK +++R+ Sbjct: 61 GRNPRTGAAVEVKAKKVPYFKPGKEMRERL 90 >gi|326796011|ref|YP_004313831.1| Integration host factor subunit beta [Marinomonas mediterranea MMB-1] gi|326546775|gb|ADZ91995.1| Integration host factor subunit beta [Marinomonas mediterranea MMB-1] Length = 101 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I ++ L KD + + + + +S GE I+I F +F + + RV Sbjct: 1 MTKSELIEMLIDQQSHLPVKDVELAIKAVLDHMSESLANGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI-MDDMRGRKCN 103 GRN +T + V++ + V FK L++ + +DD + N Sbjct: 61 GRNPKTGESVELTAKYVPHFKPGKELRELVNLDDTAHHELN 101 >gi|238760269|ref|ZP_04621413.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236] gi|238701533|gb|EEP94106.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236] Length = 91 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLGAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|229825973|ref|ZP_04452042.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC 49176] gi|229789715|gb|EEP25829.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC 49176] Length = 95 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ L + D+ + V + + + +G +++ F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEKTELKKVDAEKAVKAFVDVVTEELKKGGKVQLVGFGTFEVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI FKA LK I Sbjct: 61 RNPQTKKTIKIPASNAAKFKAGKALKDAI 89 >gi|62289129|ref|YP_220922.1| integration host factor subunit beta [Brucella abortus bv. 1 str. 9-941] gi|82699068|ref|YP_413642.1| integration host factor subunit beta [Brucella melitensis biovar Abortus 2308] gi|189023405|ref|YP_001934173.1| integration host factor subunit beta [Brucella abortus S19] gi|254690457|ref|ZP_05153711.1| integration host factor subunit beta [Brucella abortus bv. 6 str. 870] gi|254694946|ref|ZP_05156774.1| integration host factor subunit beta [Brucella abortus bv. 3 str. Tulya] gi|254696577|ref|ZP_05158405.1| integration host factor subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254731490|ref|ZP_05190068.1| integration host factor subunit beta [Brucella abortus bv. 4 str. 292] gi|256258713|ref|ZP_05464249.1| integration host factor subunit beta [Brucella abortus bv. 9 str. C68] gi|260546427|ref|ZP_05822167.1| integration host factor subunit beta [Brucella abortus NCTC 8038] gi|260756009|ref|ZP_05868357.1| integration host factor subunit beta [Brucella abortus bv. 6 str. 870] gi|260759233|ref|ZP_05871581.1| integration host factor subunit beta [Brucella abortus bv. 4 str. 292] gi|260760955|ref|ZP_05873298.1| integration host factor subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260885029|ref|ZP_05896643.1| integration host factor subunit beta [Brucella abortus bv. 9 str. C68] gi|261215285|ref|ZP_05929566.1| integration host factor subunit beta [Brucella abortus bv. 3 str. Tulya] gi|297247545|ref|ZP_06931263.1| integration host factor, beta subunit [Brucella abortus bv. 5 str. B3196] gi|75505361|sp|Q57FM3|IHFB_BRUAB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123768445|sp|Q2YP18|IHFB_BRUA2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709771|sp|B2S8E6|IHFB_BRUA1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|62195261|gb|AAX73561.1| IhfB, integration host factor, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82615169|emb|CAJ10108.1| Histone-like bacterial DNA-binding protein:Integration host factor, beta subunit [Brucella melitensis biovar Abortus 2308] gi|189018977|gb|ACD71699.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19] gi|260096534|gb|EEW80410.1| integration host factor subunit beta [Brucella abortus NCTC 8038] gi|260669551|gb|EEX56491.1| integration host factor subunit beta [Brucella abortus bv. 4 str. 292] gi|260671387|gb|EEX58208.1| integration host factor subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260676117|gb|EEX62938.1| integration host factor subunit beta [Brucella abortus bv. 6 str. 870] gi|260874557|gb|EEX81626.1| integration host factor subunit beta [Brucella abortus bv. 9 str. C68] gi|260916892|gb|EEX83753.1| integration host factor subunit beta [Brucella abortus bv. 3 str. Tulya] gi|297174714|gb|EFH34061.1| integration host factor, beta subunit [Brucella abortus bv. 5 str. B3196] Length = 94 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I S+ L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90 >gi|87303118|ref|ZP_01085916.1| DNA binding protein HU [Synechococcus sp. WH 5701] gi|87282285|gb|EAQ74245.1| DNA binding protein HU [Synechococcus sp. WH 5701] Length = 91 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ + ++ V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAVRTELTKTEVSKVVDAAIETIVDSVVEGKKVSILGFGSFEARERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++KI +RV F A K ++ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKQFKDKV 89 >gi|91792020|ref|YP_561671.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] gi|91714022|gb|ABE53948.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I++ L++ ++ R + + + ++ G+ I I F +F + +R G Sbjct: 1 MNKSELIAKIAENADLTKAEAGRALKSFETAVTEAMKNGDKISIVGFGSFETTSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLK 86 >gi|187928947|ref|YP_001899434.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|187725837|gb|ACD27002.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V ++ SR G Sbjct: 1 MNKTDLIDHVATQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I+ +V FK LK Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALK 86 >gi|332188086|ref|ZP_08389817.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] gi|332011934|gb|EGI54008.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] Length = 95 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T SDL + +S GL++ D+ + + + I + GE + ++ F F +K R GR Sbjct: 5 TTSDLAEQLSNTHGLAKADARKVIDAILANITAAVATGEEVSLNGFGKFKLKDTPERQGR 64 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 N T + + I R + F + K + D M G+ Sbjct: 65 NPSTGEAITIAASRKLTFAPA----KAVRDRMNGK 95 >gi|124515197|gb|EAY56708.1| putative histone-like DNA-binding protein [Leptospirillum rubarum] gi|206603673|gb|EDZ40153.1| Putative histone-like DNA-binding protein [Leptospirillum sp. Group II '5-way CG'] Length = 102 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+S+L+ ++ + G L++K + V +F+ I D +G A+ I F FH ++ +R Sbjct: 8 TLTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAAR 67 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN T +KI F A K Sbjct: 68 TGRNPATGAVIKIAATTTPRFAAGKAFK 95 >gi|262276977|ref|ZP_06054770.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha proteobacterium HIMB114] gi|262224080|gb|EEY74539.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha proteobacterium HIMB114] Length = 91 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV IS LS+ D+ R ++ N I D+ +A+KI+ F T+ V ++ +R G Sbjct: 1 MNKKQLVAKISSTLNLSKADAERTFDSITNIILDALKDDDAVKIAGFGTYKVAKRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I + V F + LK Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALK 86 >gi|261210560|ref|ZP_05924853.1| DNA-binding protein HU-beta [Vibrio sp. RC341] gi|260840345|gb|EEX66916.1| DNA-binding protein HU-beta [Vibrio sp. RC341] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAANADISKASAGRALDAFIEAMSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI +V FKA LK Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALK 86 >gi|103486291|ref|YP_615852.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] gi|98976368|gb|ABF52519.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +++ GL++ D+++ V +F+ I + +G +++ F TF V ++ + G Sbjct: 1 MNKQDLIAAVADSSGLTKGDASKAVEAVFDAITGALKKGGEVRLVGFGTFAVSKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIAASNQPKFKAGKALKDAV 89 >gi|10955165|ref|NP_059821.1| hypothetical protein pTi_149 [Agrobacterium tumefaciens] gi|61226436|sp|P0A3I1|IHFB_AGRTU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|61226439|sp|P0A3I2|IHFB_AGRT9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|2773264|gb|AAC72021.1| ysa [Agrobacterium tumefaciens] gi|11124690|emb|CAC15177.1| IHF beta subunit-like protein [Agrobacterium tumefaciens] Length = 102 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV ++ K L R+D+ V + +EI + RGE + I SF TF V+ + +R Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN V I+ + V F+A ++ R+ Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRL 90 >gi|33602439|ref|NP_889999.1| integration host factor beta-subunit [Bordetella bronchiseptica RB50] gi|33576878|emb|CAE33958.1| integration host factor beta-subunit [Bordetella bronchiseptica RB50] Length = 110 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 44/74 (59%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+GRN ++ ++V + ++ Sbjct: 8 LAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQVLVPGKQ 67 Query: 80 VVVFKASSILKKRI 93 V FKA L++R+ Sbjct: 68 VPHFKAGKELRERV 81 >gi|153871697|ref|ZP_02000804.1| DNA-binding protein HU [Beggiatoa sp. PS] gi|152071839|gb|EDN69198.1| DNA-binding protein HU [Beggiatoa sp. PS] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ +++ + + V + I D+ +++ + F TF V+++ +RVG Sbjct: 1 MNKSELIQAVAESAEITKGQAGKAVDAVIESIKDALAEADSVTLIGFGTFTVRERAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I V VFK LK + Sbjct: 61 RNPRTGERLDIKAANVPVFKPGKALKDAV 89 >gi|90406779|ref|ZP_01214971.1| putative integration host factor, beta subunit [Psychromonas sp. CNPT3] gi|90312016|gb|EAS40109.1| putative integration host factor, beta subunit [Psychromonas sp. CNPT3] Length = 95 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ ++ K F LS ++ V + +S +GE I++ F +F + + R+ Sbjct: 1 MTKSDLIEKLTNKHFQLSVREVEDSVKETLQLMTNSLAQGERIEVRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELGGKYVPHFKPGKELRERV 90 >gi|15804591|ref|NP_290632.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 EDL933] gi|15834177|ref|NP_312950.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|16131830|ref|NP_418428.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|24115284|ref|NP_709794.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a str. 301] gi|26250771|ref|NP_756811.1| transcriptional regulator HU subunit alpha [Escherichia coli CFT073] gi|30064718|ref|NP_838889.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a str. 2457T] gi|74314494|ref|YP_312913.1| transcriptional regulator HU subunit alpha [Shigella sonnei Ss046] gi|82546342|ref|YP_410289.1| transcriptional regulator HU subunit alpha [Shigella boydii Sb227] gi|82778824|ref|YP_405173.1| transcriptional regulator HU subunit alpha [Shigella dysenteriae Sd197] gi|89110038|ref|AP_003818.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|91212793|ref|YP_542779.1| transcriptional regulator HU subunit alpha [Escherichia coli UTI89] gi|110644335|ref|YP_672065.1| transcriptional regulator HU subunit alpha [Escherichia coli 536] gi|110807850|ref|YP_691370.1| transcriptional regulator HU subunit alpha [Shigella flexneri 5 str. 8401] gi|117626262|ref|YP_859585.1| transcriptional regulator HU subunit alpha [Escherichia coli APEC O1] gi|157157657|ref|YP_001465495.1| transcriptional regulator HU subunit alpha [Escherichia coli E24377A] gi|157163469|ref|YP_001460787.1| transcriptional regulator HU subunit alpha [Escherichia coli HS] gi|168752035|ref|ZP_02777057.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4113] gi|168758604|ref|ZP_02783611.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4401] gi|168764580|ref|ZP_02789587.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4501] gi|168771472|ref|ZP_02796479.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4486] gi|168777387|ref|ZP_02802394.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4196] gi|168780385|ref|ZP_02805392.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4076] gi|168790360|ref|ZP_02815367.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC869] gi|168798366|ref|ZP_02823373.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC508] gi|170021997|ref|YP_001726951.1| transcriptional regulator HU subunit alpha [Escherichia coli ATCC 8739] gi|170083461|ref|YP_001732781.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170682013|ref|YP_001746384.1| transcriptional regulator HU subunit alpha [Escherichia coli SMS-3-5] gi|170770125|ref|ZP_02904578.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627] gi|187733664|ref|YP_001882686.1| transcriptional regulator HU subunit alpha [Shigella boydii CDC 3083-94] gi|188494754|ref|ZP_03002024.1| DNA-binding protein HU-alpha [Escherichia coli 53638] gi|191168661|ref|ZP_03030442.1| DNA-binding protein HU-alpha [Escherichia coli B7A] gi|191174297|ref|ZP_03035805.1| DNA-binding protein HU-alpha [Escherichia coli F11] gi|193066426|ref|ZP_03047473.1| DNA-binding protein HU-alpha [Escherichia coli E22] gi|193067891|ref|ZP_03048857.1| DNA-binding protein HU-alpha [Escherichia coli E110019] gi|194429963|ref|ZP_03062472.1| DNA-binding protein HU-alpha [Escherichia coli B171] gi|194434756|ref|ZP_03067007.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012] gi|194439785|ref|ZP_03071852.1| DNA-binding protein HU-alpha [Escherichia coli 101-1] gi|195939626|ref|ZP_03085008.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208808153|ref|ZP_03250490.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4206] gi|208813268|ref|ZP_03254597.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4045] gi|208820185|ref|ZP_03260505.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4042] gi|209397488|ref|YP_002273516.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4115] gi|209921479|ref|YP_002295563.1| transcriptional regulator HU subunit alpha [Escherichia coli SE11] gi|215489332|ref|YP_002331763.1| transcriptional regulator HU subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|217324933|ref|ZP_03441017.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. TW14588] gi|218551016|ref|YP_002384807.1| transcriptional regulator HU subunit alpha [Escherichia fergusonii ATCC 35469] gi|218556555|ref|YP_002389469.1| transcriptional regulator HU subunit alpha [Escherichia coli IAI1] gi|218561066|ref|YP_002393979.1| transcriptional regulator HU subunit alpha [Escherichia coli S88] gi|218692281|ref|YP_002400493.1| transcriptional regulator HU subunit alpha [Escherichia coli ED1a] gi|218697708|ref|YP_002405375.1| transcriptional regulator HU subunit alpha [Escherichia coli 55989] gi|218707619|ref|YP_002415138.1| transcriptional regulator HU subunit alpha [Escherichia coli UMN026] gi|227885470|ref|ZP_04003275.1| DNA-binding protein HU-alpha [Escherichia coli 83972] gi|237702767|ref|ZP_04533248.1| transcriptional regulator HU subunit alpha [Escherichia sp. 3_2_53FAA] gi|238903057|ref|YP_002928853.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli BW2952] gi|253775370|ref|YP_003038201.1| transcriptional regulator HU subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039257|ref|ZP_04873306.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43] gi|254163942|ref|YP_003047050.1| transcriptional regulator HU subunit alpha [Escherichia coli B str. REL606] gi|254795998|ref|YP_003080835.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|256021679|ref|ZP_05435544.1| transcriptional regulator HU subunit alpha [Shigella sp. D9] gi|256026316|ref|ZP_05440181.1| transcriptional regulator HU subunit alpha [Escherichia sp. 4_1_40B] gi|260846800|ref|YP_003224578.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|260858110|ref|YP_003232001.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|260870711|ref|YP_003237113.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O111:H- str. 11128] gi|261227288|ref|ZP_05941569.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261257035|ref|ZP_05949568.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285415|ref|YP_003502233.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str. CB9615] gi|293407617|ref|ZP_06651535.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1412] gi|293413436|ref|ZP_06656096.1| transcriptional regulator HU subunit beta [Escherichia coli B354] gi|293417502|ref|ZP_06660125.1| DNA-binding protein HU-alpha [Escherichia coli B185] gi|293474307|ref|ZP_06664716.1| transcriptional regulator HU subunit beta [Escherichia coli B088] gi|298383365|ref|ZP_06992957.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1302] gi|300819812|ref|ZP_07099999.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300824619|ref|ZP_07104727.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300897585|ref|ZP_07115994.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300907554|ref|ZP_07125192.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300919418|ref|ZP_07135922.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300925869|ref|ZP_07141712.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300928819|ref|ZP_07144327.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300938775|ref|ZP_07153488.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300947393|ref|ZP_07161586.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300954769|ref|ZP_07167199.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300979674|ref|ZP_07174646.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300985441|ref|ZP_07177444.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|301019441|ref|ZP_07183614.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|301023370|ref|ZP_07187160.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|301047735|ref|ZP_07194793.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|301302187|ref|ZP_07208319.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|301325708|ref|ZP_07219167.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301645744|ref|ZP_07245665.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|306812015|ref|ZP_07446223.1| transcriptional regulator HU subunit alpha [Escherichia coli NC101] gi|307140692|ref|ZP_07500048.1| transcriptional regulator HU subunit alpha [Escherichia coli H736] gi|307315027|ref|ZP_07594613.1| histone family protein DNA-binding protein [Escherichia coli W] gi|309783956|ref|ZP_07678601.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617] gi|309797704|ref|ZP_07692090.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|312965347|ref|ZP_07779580.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75] gi|312974214|ref|ZP_07788384.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70] gi|331644736|ref|ZP_08345854.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736] gi|331649853|ref|ZP_08350931.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605] gi|331655700|ref|ZP_08356690.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718] gi|331660560|ref|ZP_08361493.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA206] gi|331665656|ref|ZP_08366552.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA143] gi|331670854|ref|ZP_08371689.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA271] gi|331675486|ref|ZP_08376235.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA280] gi|331680123|ref|ZP_08380784.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591] gi|331685742|ref|ZP_08386324.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299] gi|332282922|ref|ZP_08395335.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella sp. D9] gi|82581650|sp|P0ACF2|DBHA_ECO57 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|82581651|sp|P0ACF1|DBHA_ECOL6 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|82581652|sp|P0ACF0|DBHA_ECOLI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|82581653|sp|P0ACF3|DBHA_SHIFL RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|34810779|pdb|1MUL|A Chain A, Crystal Structure Of The E. Coli Hu Alpha2 Protein gi|134105078|pdb|2O97|A Chain A, Crystal Structure Of E. Coli Hu Heterodimer gi|12518929|gb|AAG59197.1|AE005631_12 DNA-binding protein HU-alpha (HU-2) [Escherichia coli O157:H7 str. EDL933] gi|26111202|gb|AAN83385.1|AE016770_185 DNA-binding protein HU-alpha [Escherichia coli CFT073] gi|41765|emb|CAA29412.1| unnamed protein product [Escherichia coli] gi|396339|gb|AAC43098.1| histonelike DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli str. K-12 substr. MG1655] gi|1790433|gb|AAC76974.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|13364399|dbj|BAB38346.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. Sakai] gi|24054578|gb|AAN45501.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str. 301] gi|30042978|gb|AAP18700.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str. 2457T] gi|73857971|gb|AAZ90678.1| DNA-binding protein HU-alpha [Shigella sonnei Ss046] gi|81242972|gb|ABB63682.1| DNA-binding protein HU-alpha [Shigella dysenteriae Sd197] gi|81247753|gb|ABB68461.1| DNA-binding protein HU-alpha [Shigella boydii Sb227] gi|85676069|dbj|BAE77319.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|91074367|gb|ABE09248.1| DNA-binding protein HU-alpha (HU-2) [Escherichia coli UTI89] gi|110345927|gb|ABG72164.1| DNA-binding protein HU-alpha [Escherichia coli 536] gi|110617398|gb|ABF06065.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 5 str. 8401] gi|115515386|gb|ABJ03461.1| DNA-binding protein HU-alpha [Escherichia coli APEC O1] gi|157069149|gb|ABV08404.1| DNA-binding protein HU-alpha [Escherichia coli HS] gi|157079687|gb|ABV19395.1| DNA-binding protein HU-alpha [Escherichia coli E24377A] gi|169756925|gb|ACA79624.1| histone family protein DNA-binding protein [Escherichia coli ATCC 8739] gi|169891296|gb|ACB05003.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170121007|gb|EDS89938.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627] gi|170519731|gb|ACB17909.1| DNA-binding protein HU-alpha [Escherichia coli SMS-3-5] gi|187430656|gb|ACD09930.1| DNA-binding protein HU-alpha [Shigella boydii CDC 3083-94] gi|187767348|gb|EDU31192.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4196] gi|188014035|gb|EDU52157.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4113] gi|188489953|gb|EDU65056.1| DNA-binding protein HU-alpha [Escherichia coli 53638] gi|189001743|gb|EDU70729.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4076] gi|189354599|gb|EDU73018.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4401] gi|189359757|gb|EDU78176.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4486] gi|189365455|gb|EDU83871.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4501] gi|189370167|gb|EDU88583.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC869] gi|189379196|gb|EDU97612.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC508] gi|190901301|gb|EDV61069.1| DNA-binding protein HU-alpha [Escherichia coli B7A] gi|190905429|gb|EDV65060.1| DNA-binding protein HU-alpha [Escherichia coli F11] gi|192925950|gb|EDV80597.1| DNA-binding protein HU-alpha [Escherichia coli E22] gi|192958866|gb|EDV89303.1| DNA-binding protein HU-alpha [Escherichia coli E110019] gi|194411992|gb|EDX28305.1| DNA-binding protein HU-alpha [Escherichia coli B171] gi|194416980|gb|EDX33098.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012] gi|194421282|gb|EDX37302.1| DNA-binding protein HU-alpha [Escherichia coli 101-1] gi|208727954|gb|EDZ77555.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4206] gi|208734545|gb|EDZ83232.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4045] gi|208740308|gb|EDZ87990.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4042] gi|209158888|gb|ACI36321.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4115] gi|209751678|gb|ACI74146.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751680|gb|ACI74147.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751682|gb|ACI74148.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751684|gb|ACI74149.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751686|gb|ACI74150.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209914738|dbj|BAG79812.1| DNA-binding protein [Escherichia coli SE11] gi|215267404|emb|CAS11855.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321154|gb|EEC29578.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. TW14588] gi|218354440|emb|CAV01252.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli 55989] gi|218358557|emb|CAQ91205.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia fergusonii ATCC 35469] gi|218363324|emb|CAR00974.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli IAI1] gi|218367835|emb|CAR05630.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli S88] gi|218429845|emb|CAR10671.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli ED1a] gi|218434716|emb|CAR15648.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli UMN026] gi|222035711|emb|CAP78456.1| DNA-binding protein HU-alpha [Escherichia coli LF82] gi|226838492|gb|EEH70522.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43] gi|226903080|gb|EEH89339.1| transcriptional regulator HU subunit alpha [Escherichia sp. 3_2_53FAA] gi|227837544|gb|EEJ48010.1| DNA-binding protein HU-alpha [Escherichia coli 83972] gi|238861437|gb|ACR63435.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli BW2952] gi|242379531|emb|CAQ34347.1| transcriptional dual regulator HU-alpha (HU-2), subunit of HU transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253326414|gb|ACT31016.1| histone family protein DNA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975843|gb|ACT41514.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli B str. REL606] gi|253979999|gb|ACT45669.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli BL21(DE3)] gi|254595398|gb|ACT74759.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|257756759|dbj|BAI28261.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257761947|dbj|BAI33444.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|257767067|dbj|BAI38562.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O111:H- str. 11128] gi|260451172|gb|ACX41594.1| histone family protein DNA-binding protein [Escherichia coli DH1] gi|281181064|dbj|BAI57394.1| DNA-binding protein [Escherichia coli SE15] gi|281603384|gb|ADA76368.1| DNA-binding protein HU-alpha [Shigella flexneri 2002017] gi|290765288|gb|ADD59249.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str. CB9615] gi|291321337|gb|EFE60778.1| transcriptional regulator HU subunit beta [Escherichia coli B088] gi|291425385|gb|EFE98425.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1412] gi|291430829|gb|EFF03826.1| DNA-binding protein HU-alpha [Escherichia coli B185] gi|291468031|gb|EFF10530.1| transcriptional regulator HU subunit beta [Escherichia coli B354] gi|294490664|gb|ADE89420.1| DNA-binding protein HU-alpha [Escherichia coli IHE3034] gi|298276244|gb|EFI17765.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1302] gi|299880890|gb|EFI89101.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|300300380|gb|EFJ56765.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|300306533|gb|EFJ61053.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|300318268|gb|EFJ68052.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300358661|gb|EFJ74531.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300399256|gb|EFJ82794.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|300400721|gb|EFJ84259.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300409458|gb|EFJ92996.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300413511|gb|EFJ96821.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300418059|gb|EFK01370.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300452997|gb|EFK16617.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300456285|gb|EFK19778.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300463200|gb|EFK26693.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300522868|gb|EFK43937.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300527633|gb|EFK48695.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300842350|gb|EFK70110.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|300847497|gb|EFK75257.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301075993|gb|EFK90799.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|305854620|gb|EFM55056.1| transcriptional regulator HU subunit alpha [Escherichia coli NC101] gi|306905532|gb|EFN36065.1| histone family protein DNA-binding protein [Escherichia coli W] gi|307556143|gb|ADN48918.1| DNA-binding protein HU-alpha [Escherichia coli ABU 83972] gi|307628383|gb|ADN72687.1| transcriptional regulator HU subunit alpha [Escherichia coli UM146] gi|308118716|gb|EFO55978.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|308928327|gb|EFP73789.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617] gi|309704416|emb|CBJ03765.1| DNA-binding protein HU-alpha [Escherichia coli ETEC H10407] gi|310331381|gb|EFP98646.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70] gi|312290021|gb|EFR17908.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75] gi|312948574|gb|ADR29401.1| transcriptional regulator HU subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|313648650|gb|EFS13090.1| DNA-binding protein HU-alpha [Shigella flexneri 2a str. 2457T] gi|315063325|gb|ADT77652.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli W] gi|315138557|dbj|BAJ45716.1| DNA-binding protein HU-alpha [Escherichia coli DH1] gi|315252732|gb|EFU32700.1| DNA-binding protein HU [Escherichia coli MS 85-1] gi|315288345|gb|EFU47744.1| DNA-binding protein HU [Escherichia coli MS 110-3] gi|315294343|gb|EFU53694.1| DNA-binding protein HU [Escherichia coli MS 153-1] gi|315300743|gb|EFU59968.1| DNA-binding protein HU [Escherichia coli MS 16-3] gi|315617364|gb|EFU97970.1| DNA-binding protein HU-alpha [Escherichia coli 3431] gi|320172738|gb|EFW47972.1| DNA-binding protein HU-alpha [Shigella dysenteriae CDC 74-1112] gi|320179537|gb|EFW54488.1| DNA-binding protein HU-alpha [Shigella boydii ATCC 9905] gi|320185960|gb|EFW60708.1| DNA-binding protein HU-alpha [Shigella flexneri CDC 796-83] gi|320190903|gb|EFW65553.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC1212] gi|320197105|gb|EFW71723.1| DNA-binding protein HU-alpha [Escherichia coli WV_060327] gi|320200160|gb|EFW74749.1| DNA-binding protein HU-alpha [Escherichia coli EC4100B] gi|320639091|gb|EFX08731.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. G5101] gi|320644485|gb|EFX13548.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320649804|gb|EFX18325.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320655137|gb|EFX23093.1| transcriptional regulator HU subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660781|gb|EFX28235.1| transcriptional regulator HU subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320665899|gb|EFX32930.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|323155552|gb|EFZ41729.1| DNA-binding protein HU-alpha [Escherichia coli EPECa14] gi|323161308|gb|EFZ47217.1| DNA-binding protein HU-alpha [Escherichia coli E128010] gi|323167470|gb|EFZ53178.1| DNA-binding protein HU-alpha [Shigella sonnei 53G] gi|323174488|gb|EFZ60113.1| DNA-binding protein HU-alpha [Escherichia coli LT-68] gi|323177555|gb|EFZ63140.1| DNA-binding protein HU-alpha [Escherichia coli 1180] gi|323182099|gb|EFZ67509.1| DNA-binding protein HU-alpha [Escherichia coli 1357] gi|323190143|gb|EFZ75421.1| DNA-binding protein HU-alpha [Escherichia coli RN587/1] gi|323380611|gb|ADX52879.1| histone family protein DNA-binding protein [Escherichia coli KO11] gi|323933958|gb|EGB30432.1| bacterial DNA-binding protein [Escherichia coli E1520] gi|323938883|gb|EGB35103.1| DNA-binding protein [Escherichia coli E482] gi|323943611|gb|EGB39719.1| bacterial DNA-binding protein [Escherichia coli H120] gi|323948829|gb|EGB44726.1| DNA-binding protein [Escherichia coli H252] gi|323953788|gb|EGB49595.1| DNA-binding protein [Escherichia coli H263] gi|323958927|gb|EGB54602.1| DNA-binding protein [Escherichia coli H489] gi|323963781|gb|EGB59280.1| DNA-binding protein [Escherichia coli M863] gi|323969074|gb|EGB64382.1| DNA-binding protein [Escherichia coli TA007] gi|323974200|gb|EGB69332.1| DNA-binding protein [Escherichia coli TW10509] gi|324009499|gb|EGB78718.1| DNA-binding protein HU [Escherichia coli MS 57-2] gi|324015254|gb|EGB84473.1| DNA-binding protein HU [Escherichia coli MS 60-1] gi|324017347|gb|EGB86566.1| DNA-binding protein HU [Escherichia coli MS 117-3] gi|324110912|gb|EGC04904.1| DNA-binding protein [Escherichia fergusonii B253] gi|324115432|gb|EGC09377.1| DNA-binding protein [Escherichia coli E1167] gi|325499268|gb|EGC97127.1| transcriptional regulator HU subunit alpha [Escherichia fergusonii ECD227] gi|326347149|gb|EGD70879.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1125] gi|326347600|gb|EGD71322.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1044] gi|330908315|gb|EGH36834.1| DNA-binding protein HU-alpha [Escherichia coli AA86] gi|331036036|gb|EGI08273.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736] gi|331041319|gb|EGI13471.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605] gi|331046625|gb|EGI18712.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718] gi|331052343|gb|EGI24381.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA206] gi|331057174|gb|EGI29166.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA143] gi|331061942|gb|EGI33866.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA271] gi|331067364|gb|EGI38770.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA280] gi|331072278|gb|EGI43612.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591] gi|331077052|gb|EGI48268.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299] gi|332083889|gb|EGI89102.1| DNA-binding protein HU-alpha [Shigella boydii 5216-82] gi|332085398|gb|EGI90568.1| DNA-binding protein HU-alpha [Shigella dysenteriae 155-74] gi|332092305|gb|EGI97380.1| DNA-binding protein HU-alpha [Shigella boydii 3594-74] gi|332105274|gb|EGJ08620.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella sp. D9] gi|332345990|gb|AEE59324.1| DNA-binding protein HU-alpha [Escherichia coli UMNK88] gi|332749197|gb|EGJ79619.1| DNA-binding protein HU-alpha [Shigella flexneri 2747-71] gi|332751446|gb|EGJ81848.1| DNA-binding protein HU-alpha [Shigella flexneri 4343-70] gi|332762844|gb|EGJ93103.1| DNA-binding protein HU-&alpha [Shigella flexneri 2930-71] gi|332765544|gb|EGJ95758.1| DNA-binding protein HU-alpha [Shigella flexneri K-671] gi|332998960|gb|EGK18550.1| DNA-binding protein HU-alpha [Shigella flexneri K-218] gi|333010733|gb|EGK30161.1| DNA-binding protein HU-alpha [Shigella flexneri VA-6] gi|333014358|gb|EGK33711.1| DNA-binding protein HU-alpha [Shigella flexneri K-304] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI V F + LK Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 >gi|330444951|ref|ZP_08308605.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493069|dbj|GAA03102.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I V F A LK Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALK 86 >gi|206890650|ref|YP_002249614.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742588|gb|ACI21645.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+ + L++ ++ + + + ++ +G+ + + F +F+V ++ +R G Sbjct: 1 MTKAELVSKIASKAELTKAEAAKALDATIEAVKEALKKGDKVTLVGFGSFYVSKRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T QE+KI +V F A LK+ + Sbjct: 61 RNPRTGQEIKIPATKVPKFTAGKSLKEAV 89 >gi|85373566|ref|YP_457628.1| histone-like protein [Erythrobacter litoralis HTCC2594] gi|84786649|gb|ABC62831.1| histone-like protein [Erythrobacter litoralis HTCC2594] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ GLS+ D++ V +F+ I + G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLISAVADASGLSKSDASGAVEGVFDSITKALSNGDEVRLVGFGTFSVARRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMTIKASNQPKFKAGKGLKDAV 89 >gi|310766093|gb|ADP11043.1| DNA-binding protein HU-alpha [Erwinia sp. Ejp617] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V Q+ R+G Sbjct: 1 MNKTQLIDIIADKADLSKTQAKAALDSTLAAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F + LK+ + Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAV 89 >gi|160942315|ref|ZP_02089624.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC BAA-613] gi|158434872|gb|EDP12639.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC BAA-613] Length = 92 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV +S GL+ K S + + L + I G + + F F V + +R+ Sbjct: 1 MNKRQLVDRMSSGSGLTMKQSEKALNGLMDVIHSELSSGGNVSLIGFGVFSVADRKARMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+++ R++ VFKA S LK+ + Sbjct: 61 RNPKTGEEMEVKARKIPVFKAGSTLKRAV 89 >gi|329296189|ref|ZP_08253525.1| integration host factor subunit alpha [Plautia stali symbiont] Length = 77 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 42/74 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVEFFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDP 77 GRN +T + + P Sbjct: 62 GRNPKTGKIFQSPP 75 >gi|13476997|ref|NP_108567.1| DNA-binding protein HRm [Mesorhizobium loti MAFF303099] gi|260460894|ref|ZP_05809144.1| histone family protein DNA-binding protein [Mesorhizobium opportunistum WSM2075] gi|319784101|ref|YP_004143577.1| histone family protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14027760|dbj|BAB54353.1| DNA-binding protein; HRm [Mesorhizobium loti MAFF303099] gi|259033471|gb|EEW34732.1| histone family protein DNA-binding protein [Mesorhizobium opportunistum WSM2075] gi|317169989|gb|ADV13527.1| histone family protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ +S+ D+ V +F+ I +G +++ F F V ++ + G Sbjct: 1 MNKNELVSAVADAASISKGDAQSAVDAVFSVITGELKKGGDVRLVGFGNFTVSKRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT EVKI R V F A LK + Sbjct: 61 RNPQTGAEVKIPARTVPKFSAGKGLKDAV 89 >gi|53728750|ref|ZP_00135487.2| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208219|ref|YP_001053444.1| integration host factor subunit beta [Actinobacillus pleuropneumoniae L20] gi|165976155|ref|YP_001651748.1| integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150051|ref|YP_001968576.1| integration host factor beta-subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251469|ref|ZP_07337645.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252342|ref|ZP_07338508.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245599|ref|ZP_07527685.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247719|ref|ZP_07529757.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249952|ref|ZP_07531924.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252295|ref|ZP_07534192.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254555|ref|ZP_07536389.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256762|ref|ZP_07538541.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259009|ref|ZP_07540740.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261205|ref|ZP_07542880.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263384|ref|ZP_07545000.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166918536|sp|A3N0A3|IHFB_ACTP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709766|sp|B3GXH5|IHFB_ACTP7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709767|sp|B0BP19|IHFB_ACTPJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|126097011|gb|ABN73839.1| integration host factor beta-subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876256|gb|ABY69304.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915182|gb|ACE61434.1| integration host factor beta-subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648801|gb|EFL78991.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649701|gb|EFL79881.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853301|gb|EFM85520.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855749|gb|EFM87914.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858012|gb|EFM90096.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860217|gb|EFM92233.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862492|gb|EFM94452.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864810|gb|EFM96714.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867033|gb|EFM98890.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868936|gb|EFN00738.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871262|gb|EFN02990.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 93 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++ +S L K V + +I RGE +++ F +F + + RV Sbjct: 1 MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90 >gi|84503484|ref|ZP_01001539.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597] gi|84388162|gb|EAQ01115.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597] Length = 95 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++ E G +K + + L N I G A+ I F+ +++ Sbjct: 1 MAKPLTKTQLVAALADELGSDKKTAGAALDALANVITKEVSGGGAVAIPGVGKFYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN TN+++K + RVV + LK Sbjct: 61 ERMVRNPATNEQIKKEADRVVKVTIAKALK 90 >gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae SmR1] gi|300072453|gb|ADJ61852.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae SmR1] Length = 115 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV I+ + +S+ + R + ++ I + +G+ +++ F +F ++ +R G Sbjct: 22 VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F A K+ + Sbjct: 82 RNPQTGEEIKIAAATTVKFSAGKAFKEAV 110 >gi|291544776|emb|CBL17885.1| bacterial nucleoid protein Hbs [Ruminococcus sp. 18P13] Length = 91 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +I+ G S+KD+ R + + + I + GE I + F TF V+++ + Sbjct: 1 MTKADLIDAIAASAGSSKKDAERALQVVLSTITEKLAAGEKISLIGFGTFEVRERKEKTC 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T +++ + VFKA LK Sbjct: 61 INPRTKEKLTAPACKAPVFKAGKALK 86 >gi|56475921|ref|YP_157510.1| integration host factor subunit beta [Aromatoleum aromaticum EbN1] gi|56311964|emb|CAI06609.1| integration host factor beta-subunit [Aromatoleum aromaticum EbN1] Length = 94 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ F L KD+ V + + + ++ RG+ I+I F +F + + RV Sbjct: 1 MTKSELIARLAARFPQLVAKDADYAVKMVIDAMSEALARGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ +V + + V FKA L++R+ Sbjct: 61 GRNPKSGDKVLVPEKYVPHFKAGKELRERV 90 >gi|238650372|ref|YP_002916224.1| integration host factor alpha-subunit [Rickettsia peacockii str. Rustic] gi|238624470|gb|ACR47176.1| integration host factor alpha-subunit [Rickettsia peacockii str. Rustic] Length = 95 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + A + + + + +F +F VKQK R Sbjct: 2 TITKAKIAAMLSSKLGFSNNLCEAIVHTVFSNILEIA-KAQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95 >gi|295678172|ref|YP_003606696.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] gi|295438015|gb|ADG17185.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] Length = 92 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I S +GEA+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGEAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|152972862|ref|YP_001338008.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156935797|ref|YP_001439713.1| transcriptional regulator HU subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|206580695|ref|YP_002241059.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342] gi|238892475|ref|YP_002917209.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|260596103|ref|YP_003208674.1| transcriptional regulator HU subunit alpha [Cronobacter turicensis z3032] gi|262043760|ref|ZP_06016863.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937704|ref|YP_003441763.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|290513212|ref|ZP_06552573.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55] gi|311281445|ref|YP_003943676.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|330005095|ref|ZP_08305105.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3] gi|150957711|gb|ABR79741.1| DNA-binding protein HU-alpha (HU-2) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156534051|gb|ABU78877.1| hypothetical protein ESA_03673 [Cronobacter sakazakii ATCC BAA-894] gi|206569753|gb|ACI11529.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342] gi|238544791|dbj|BAH61142.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038884|gb|EEW40052.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260215280|emb|CBA27205.1| DNA-binding protein HU-alpha [Cronobacter turicensis z3032] gi|288892413|gb|ADC60731.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|289774309|gb|EFD82316.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55] gi|308750640|gb|ADO50392.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|328536428|gb|EGF62781.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3] Length = 90 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|148975855|ref|ZP_01812644.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3] gi|145964600|gb|EDK29853.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3] Length = 91 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 45/87 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ I+ +S++ + + L I + G+ + I F +F V + +R G Sbjct: 1 MNKSQLVEHIATSADISKEQAGNALNALVEGISTTLANGDEVAILGFGSFKVNTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I + FKA LK+ Sbjct: 61 RNPRTGEEIQIAASKTPAFKAGKALKE 87 >gi|284988917|ref|YP_003407471.1| histone family protein DNA-binding protein [Geodermatophilus obscurus DSM 43160] gi|284062162|gb|ADB73100.1| histone family protein DNA-binding protein [Geodermatophilus obscurus DSM 43160] Length = 94 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 44/87 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+K + +T L +E+ D+ RGE + +S T Q+ +R G Sbjct: 1 MNKAELVSAIAKRADVPTSTVDSVLTGLQDELVDAITRGEKVAVSGLLTVERTQRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + + I V A S LKK Sbjct: 61 RNPQTGESIDIPAANTVKVTAGSNLKK 87 >gi|119510023|ref|ZP_01629164.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414] gi|119465347|gb|EAW46243.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414] Length = 100 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++S++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVSEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKV 89 >gi|238754238|ref|ZP_04615595.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473] gi|238707485|gb|EEP99845.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473] Length = 90 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKAGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAV 89 >gi|153835692|ref|ZP_01988359.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|269961042|ref|ZP_06175411.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3] gi|148867673|gb|EDL66949.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|269834261|gb|EEZ88351.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3] Length = 90 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALK 86 >gi|315126783|ref|YP_004068786.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315015297|gb|ADT68635.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 89 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++K++ +T+L I S G+ ++I F TF + +R G Sbjct: 1 MNKAELVTAMAHTSELTKKEAQLALTSLQKVITKSLSEGDQVQIYGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + ++I+ VFK + LK Sbjct: 61 RNPQTGEAIEIEGANKAVFKPAKALK 86 >gi|319900802|ref|YP_004160530.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108] gi|319415833|gb|ADV42944.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108] Length = 88 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GL++ DS + + + + GE + + F TF V ++ +R+G Sbjct: 1 MNKAELISAMAAEAGLTKADSKKALDAFVVSVTKAMKAGEKVSLVGFGTFAVAERSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++VV FK + L Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85 >gi|167032913|ref|YP_001668144.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] gi|166859401|gb|ABY97808.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] Length = 90 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + +G+ + + F TF VK + R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI+ +V FKA LK + Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAV 89 >gi|330446590|ref|ZP_08310242.1| putative bacterial nucleoid DNA-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490781|dbj|GAA04739.1| putative bacterial nucleoid DNA-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 90 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAESADISKASAGRALDAFIEAVSETLKDGDQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSV 89 >gi|309781951|ref|ZP_07676682.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] gi|308919295|gb|EFP64961.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] Length = 90 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V ++ SR G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGKRSSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I+ +V FK LK Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALK 86 >gi|262276735|ref|ZP_06054528.1| integration host factor subunit beta (IHF-beta) [alpha proteobacterium HIMB114] gi|262223838|gb|EEY74297.1| integration host factor subunit beta (IHF-beta) [alpha proteobacterium HIMB114] Length = 103 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 3 KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT +SD+VK + F + + + ++F + ++ G I+I TF VK+ + Sbjct: 4 KTFVKSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKKMPA 63 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R RN +T + ++I+ + V +K+S +L RI D Sbjct: 64 RNARNPKTGETIQIEEKNKVKWKSSKLLNYRINKD 98 >gi|331005201|ref|ZP_08328595.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989] gi|330420983|gb|EGG95255.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989] Length = 91 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + R + + I + G+ + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVLETIESTLKNGDPVTLVGFGTFSVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I ++ FKA LK + Sbjct: 61 RNPQTGAPIQIAAAKIPGFKAGKSLKDAV 89 >gi|328953767|ref|YP_004371101.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328454091|gb|AEB09920.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 95 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+++++K L+ K + V TLF + ++ V+ E I+I F +F VK G Sbjct: 1 MNKSQLIEALAKAENLTIKRAEMVVNTLFENMTNALVQDERIEIRGFGSFKVKCYEGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ +++ FK LK+R+ Sbjct: 61 RNPKTGEVIEVCDKKLPFFKVGKELKERV 89 >gi|226330391|ref|ZP_03805909.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198] gi|225201186|gb|EEG83540.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198] Length = 87 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 39/63 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V + F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAENLFEKLGVSKRDAKDLVESFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRN 66 GRN Sbjct: 62 GRN 64 >gi|224541850|ref|ZP_03682389.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM 15897] gi|224525200|gb|EEF94305.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM 15897] Length = 90 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +S++ L++KD+ V T+F+ + +S + G+ + IS F TF + R G Sbjct: 1 MNKKELINIVSEKRDLTKKDAEILVNTVFDTMVESMIDGDKVLISGFGTFKINHCLERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 + +T + + I R V FK S+ LK Sbjct: 61 VSPKTKEPIIIPASRTVSFKPSNRLK 86 >gi|16126570|ref|NP_421134.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|221235352|ref|YP_002517789.1| DNA-binding protein HU [Caulobacter crescentus NA1000] gi|13423856|gb|AAK24302.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|220964525|gb|ACL95881.1| DNA-binding protein HU [Caulobacter crescentus NA1000] Length = 92 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 8 SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 SDLV +++ + L++ + + +F I D+AV+GE + I F F V+ K +R GRN Sbjct: 4 SDLVDAAVAADEKLTKTQAKAIIDGVFKSISDAAVKGEEVSIPGFGKFKVQAKPARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + V F + LK + Sbjct: 64 PATGATIEIAASKKVGFTPAKQLKDAV 90 >gi|47459316|ref|YP_016178.1| nucleoid DNA-binding protein HU [Mycoplasma mobile 163K] gi|47458646|gb|AAT27967.1| bacterial nucleoid DNA-binding protein HU [Mycoplasma mobile 163K] Length = 108 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 IT+ DL+ +I++ S+K+ V EI V + I +SSF F + ++ +R G Sbjct: 18 ITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSG 77 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T++ ++I + V FK S LK ++ Sbjct: 78 INPKTSEIIQIKATKSVKFKVSKSLKDQV 106 >gi|332532267|ref|ZP_08408148.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] gi|332038365|gb|EGI74810.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + + G+++ + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAV 89 >gi|88803467|ref|ZP_01118993.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii 23-P] gi|88781033|gb|EAR12212.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii 23-P] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ + G+S+ + + + I S + E + + F TF V ++ +R G Sbjct: 1 MNKSDLIDAMAADAGISKVAAKAALESFTTHITSSLQKKEKVALVGFGTFSVSERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT ++I + V FKA + L Sbjct: 61 RNPQTGATIQISAKNVAKFKAGAGL 85 >gi|269103657|ref|ZP_06156354.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp. damselae CIP 102761] gi|268163555|gb|EEZ42051.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp. damselae CIP 102761] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKAALEATLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I V F A LK + Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDSV 89 >gi|303248758|ref|ZP_07335010.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|302489845|gb|EFL49774.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++D++ I G++ K ++ + + + I DS V GEA+ ++ F TF V ++ +R Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLAAIQDSLVAGEALTLTGFGTFKVSERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GR+ +T + I + V F LK + Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAV 90 >gi|37681329|ref|NP_935938.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016] gi|37200080|dbj|BAC95909.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016] Length = 101 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + N + D+ G+ +++ F TF V + +R G Sbjct: 12 MNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK+ + Sbjct: 72 RNPKTGDEIQIAAANVPAFVAGKALKESV 100 >gi|315500767|ref|YP_004089568.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315418779|gb|ADU15417.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 V ++F I ++AV G+ + + +F F V+ K +R GRNL T ++I R +VFK Sbjct: 24 VDSVFASITEAAVLGQEVNLPAFGKFQVQAKPAREGRNLSTGATIQIAASRKLVFKPGKP 83 Query: 89 LKKRI 93 +K R+ Sbjct: 84 VKDRL 88 >gi|152997229|ref|YP_001342064.1| integration host factor subunit beta [Marinomonas sp. MWYL1] gi|189045039|sp|A6W0A0|IHFB_MARMS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150838153|gb|ABR72129.1| integration host factor, beta subunit [Marinomonas sp. MWYL1] Length = 102 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I ++ L KD + + + + DS GE I+I F +F + + R+ Sbjct: 1 MTKSELIELLIDQQSHLPVKDVEQAIKAMLEHMSDSLANGERIEIRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK L++ + Sbjct: 61 GRNPKTGESVELSAKYVPHFKPGKELRELV 90 >gi|117620625|ref|YP_856545.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145298874|ref|YP_001141715.1| nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] gi|330829915|ref|YP_004392867.1| histone-like DNA-binding protein [Aeromonas veronii B565] gi|117562032|gb|ABK38980.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|142851646|gb|ABO89967.1| Bacterial nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] gi|328805051|gb|AEB50250.1| histone-like DNA-binding protein [Aeromonas veronii B565] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIADGADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGATIEIAAGKVPAFKAGKALKDAV 89 >gi|78357101|ref|YP_388550.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219506|gb|ABB38855.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+++ L++ ++ R + + D V+ + ++ F TF V+ + R G Sbjct: 1 MTKADLVEKIAEKANLTKANAERSLNAFLESVEDVLVKEGKLTLTGFGTFMVETRQERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I +VV F+ +LK Sbjct: 61 RNPRTGDPIVIPAAKVVKFRPGKLLK 86 >gi|319779317|ref|YP_004130230.1| Integration host factor beta subunit [Taylorella equigenitalis MCE9] gi|317109341|gb|ADU92087.1| Integration host factor beta subunit [Taylorella equigenitalis MCE9] Length = 109 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ + + +D V T+ + + S +G I+I F +F + Q+ RV Sbjct: 1 MTKSELIDALVASYPQFATRDMDIAVKTILDAMTLSLAQGHRIEIRGFGSFSLSQRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++ +RV FKA L++++ ++ + Sbjct: 61 GRNPRTGEMVEVVGKRVPHFKAGKELREKVDEEFK 95 >gi|225023874|ref|ZP_03713066.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC 23834] gi|224943348|gb|EEG24557.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC 23834] Length = 146 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+KE +S+ + + + + + +G+ + + F TF+V ++ R G Sbjct: 58 VNKSELIEAIAKEADISKAAAGKALDGFTKAVTTALKKGDTVTLVGFGTFYVGERAERKG 117 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + F+A LK Sbjct: 118 RNPQTGKELIIPAAKSPKFRAGKALK 143 >gi|167629351|ref|YP_001679850.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1] gi|167592091|gb|ABZ83839.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ L+ +D+ + V F + ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKAELVSAVAEKAQLTEEDAKKAVNAFFAVVQEALKAGDTVQLLGFGTFKVRERTAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I + FKA L+ Sbjct: 61 RNPQTGETIIIKASKTPTFKAGKSLR 86 >gi|160894582|ref|ZP_02075358.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50] gi|156863893|gb|EDO57324.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAEKTELSKKDAEKALKAFTDVVAEELKKGEKVQLVGFGTFEVAEREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + FKA LK Sbjct: 61 RNPRTGETMTIAASKSPKFKAGKALK 86 >gi|170728675|ref|YP_001762701.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] gi|169814022|gb|ACA88606.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ G+ I I F +F + +R G Sbjct: 1 MNKTELVAKMAEHAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA LK Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLK 86 >gi|300714862|ref|YP_003739665.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae Eb661] gi|299060698|emb|CAX57805.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae Eb661] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|254294205|ref|YP_003060228.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] gi|254042736|gb|ACT59531.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] Length = 88 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L K +++ +++ ++ R V + + I +GE + ++ F TF K + R G Sbjct: 1 MNKSELTKQVAEAASMTQSEAGRAVDAVLDTISSELKKGEQVALAGFGTFLAKTREERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + + I + FK +S+LK Sbjct: 61 RNPATGKPMTIPKKTSASFKPASVLK 86 >gi|188532334|ref|YP_001906131.1| transcriptional regulator HU subunit alpha [Erwinia tasmaniensis Et1/99] gi|292486747|ref|YP_003529617.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430] gi|188027376|emb|CAO95223.1| DNA-binding protein HU-alpha [Erwinia tasmaniensis Et1/99] gi|291552164|emb|CBA19201.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430] gi|312170813|emb|CBX79074.1| DNA-binding protein HU-alpha [Erwinia amylovora ATCC BAA-2158] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|304399314|ref|ZP_07381179.1| histone family protein DNA-binding protein [Pantoea sp. aB] gi|308188920|ref|YP_003933051.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|304353170|gb|EFM17552.1| histone family protein DNA-binding protein [Pantoea sp. aB] gi|308059430|gb|ADO11602.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|224369016|ref|YP_002603180.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum HRM2] gi|223691733|gb|ACN15016.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum HRM2] Length = 76 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++R+ + V F+ + D+ G+ ++I +FHVK S +GRN +T + V I ++ Sbjct: 1 MTREGAAEVVEIFFDSLIDALANGDRVEIRGLCSFHVKDYKSYIGRNPKTGERVLIPGKK 60 Query: 80 VVVFKASSILKKRI 93 + FKA LK+ + Sbjct: 61 LPFFKAGKELKEGV 74 >gi|317494900|ref|ZP_07953310.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917088|gb|EFV38437.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI V F + LK + Sbjct: 61 RNPQTGMEIKIAAANVPAFVSGKALKDAV 89 >gi|262067818|ref|ZP_06027430.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|291378542|gb|EFE86060.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 46/82 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +S++ G+ + ++ +F+ TL I + +GE + TF VK + + G Sbjct: 1 MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 N +T +++ I R+ V FKAS Sbjct: 61 VNPKTGEKIVIPARKAVTFKAS 82 >gi|322514507|ref|ZP_08067544.1| integration host factor beta subunit [Actinobacillus ureae ATCC 25976] gi|322119577|gb|EFX91655.1| integration host factor beta subunit [Actinobacillus ureae ATCC 25976] Length = 93 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + +S L K V L +I S +GE +++ F +F + + R+ Sbjct: 1 MTKSELIDNLVSLNPTLQVKSVEDGVKELLEQIMLSLEQGERVEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90 >gi|125470062|gb|ABN42254.1| gp50 [Sodalis phage phiSG1] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++++S++ +S+ + + L + + G+ + + F TF VK + R G Sbjct: 1 MNKPELIRAVSEKADISQAKAGLVIDALTEAVTQTLAAGDVVSLVGFGTFEVKSRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RV F+A LK+ + Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89 >gi|27364627|ref|NP_760155.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6] gi|320155021|ref|YP_004187400.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O] gi|27360772|gb|AAO09682.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6] gi|319930333|gb|ADV85197.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + N + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESV 89 >gi|293400638|ref|ZP_06644783.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305664|gb|EFE46908.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 94 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 44/75 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + LV+ ++++ +++KD+T V T+F EI + G + +S F F V ++ Sbjct: 1 MSEILNKKALVEVVAEKLEMTKKDATVAVDTVFEEITKTLADGGKVDLSGFGKFEVAERP 60 Query: 61 SRVGRNLQTNQEVKI 75 +R+G N T + + I Sbjct: 61 ARMGINPATKEPLPI 75 >gi|149911448|ref|ZP_01900065.1| DNA-binding protein HU-alpha [Moritella sp. PE36] gi|149805479|gb|EDM65486.1| DNA-binding protein HU-alpha [Moritella sp. PE36] Length = 94 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +++ + L++ + + + + I +S EA+++ F TF V ++ +R+G Sbjct: 1 MNKTQLIDAVAAKADLTKVQAKAALEEILSAITESLKEKEAVQLIGFGTFKVSERSARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I + F A LK Sbjct: 61 RNPQTGEEIQISAATIPAFVAGKALK 86 >gi|257076532|ref|ZP_05570893.1| DNA-binding protein [Ferroplasma acidarmanus fer1] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 44/83 (53%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K ++ ++K + +T E +S G + ++ F F K++ RV RN Sbjct: 5 SELSKKVASTTNTTQKKTAEIITAFLKETVESVNAGNKVNLADFGIFERKEQKERVARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 +T +E+K+ + VF+ASS +K Sbjct: 65 KTREEIKVPAKDKFVFRASSAIK 87 >gi|71276514|ref|ZP_00652789.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Dixon] gi|71901996|ref|ZP_00684043.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|170729735|ref|YP_001775168.1| histone-like protein [Xylella fastidiosa M12] gi|71162691|gb|EAO12418.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Dixon] gi|71728241|gb|EAO30425.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|167964528|gb|ACA11538.1| histone-like protein [Xylella fastidiosa M12] Length = 94 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ +G+++ + F TF V+ + R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + + I FK LK + Sbjct: 61 RNPKSGEPIMIAASNNPSFKPGKALKDAV 89 >gi|86146200|ref|ZP_01064525.1| DNA-binding protein HU-beta [Vibrio sp. MED222] gi|218709724|ref|YP_002417345.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] gi|85835911|gb|EAQ54044.1| DNA-binding protein HU-beta [Vibrio sp. MED222] gi|218322743|emb|CAV18920.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 45/87 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ I+ +S++ + + L I + G+ + I F +F V + +R G Sbjct: 1 MNKSQLVEHIATSADISKEQAGTALNALVEGISTTLANGDDVSILGFGSFKVNSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I + FKA LK+ Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87 >gi|225010184|ref|ZP_03700656.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] gi|225005663|gb|EEG43613.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] Length = 96 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVTKISEKLGIEKGDIQATVEAFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|156973715|ref|YP_001444622.1| nucleoid DNA-binding protein [Vibrio harveyi ATCC BAA-1116] gi|156525309|gb|ABU70395.1| hypothetical protein VIBHAR_01420 [Vibrio harveyi ATCC BAA-1116] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAENADISKASAGRALDAFIDAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T E++I +V FKA LK Sbjct: 61 RNPKTGDEIQIAEAKVPSFKAGKALK 86 >gi|77360983|ref|YP_340558.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875894|emb|CAI87115.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas haloplanktis TAC125] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + + G+++ + F TF V+ + +R G Sbjct: 1 MNKSQLIDQIAADADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTFSVRDRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAV 89 >gi|304310684|ref|YP_003810282.1| Integration host factor beta subunit [gamma proteobacterium HdN1] gi|301796417|emb|CBL44625.1| Integration host factor beta subunit [gamma proteobacterium HdN1] Length = 99 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + SK+ LS+KD + TL + + G I+I F +F + + +R Sbjct: 1 MTKSELIEKVASKQPQLSQKDVELAIKTLLEGMSQTLATGGRIEIRGFGSFSLHYRSART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGESVDLTGKYVPHFKPGKELRERV 90 >gi|227115024|ref|ZP_03828680.1| transcriptional regulator HU subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328381|ref|ZP_03832405.1| transcriptional regulator HU subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253686628|ref|YP_003015818.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261819582|ref|YP_003257688.1| transcriptional regulator HU subunit alpha [Pectobacterium wasabiae WPP163] gi|251753206|gb|ACT11282.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261603595|gb|ACX86081.1| histone family protein DNA-binding protein [Pectobacterium wasabiae WPP163] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|182419997|ref|ZP_02951231.1| DNA-binding protein HU 1 [Clostridium butyricum 5521] gi|237669484|ref|ZP_04529464.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376034|gb|EDT73621.1| DNA-binding protein HU 1 [Clostridium butyricum 5521] gi|237654928|gb|EEP52488.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E BL5262] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + + ++ GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALENGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I V VFKA K ++ Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89 >gi|33152542|ref|NP_873895.1| integration host factor, alpha chain [Haemophilus ducreyi 35000HP] gi|71152153|sp|Q7VLG4|IHFA_HAEDU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|33148766|gb|AAP96284.1| integration host factor, alpha chain [Haemophilus ducreyi 35000HP] Length = 98 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ + S+ ++G + + +FV F EI + G+ +K+S F F +++K +R Sbjct: 2 TLTKVEFTASLISKYGFDKSVAKQFVEQFFEEIRVALANGQEVKLSGFGNFSLRKKNARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK ++R+ + Sbjct: 62 GRNPKTGESVAVSARRVVVFKPGQKFRERVEN 93 >gi|325300201|ref|YP_004260118.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324319754|gb|ADY37645.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LVK IS+ G + + +E+ S RG+ + + SF TF +K + +V Sbjct: 1 MTKAELVKEISQTTGTDSVTILSVIESFMSEVKSSLERGDEVTLRSFGTFCLKHRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RNL N + I + FK S+ KR+ Sbjct: 61 RNLSLNTSMVIPEHDIPSFKPSTEFLKRL 89 >gi|295690480|ref|YP_003594173.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] gi|295432383|gb|ADG11555.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] Length = 92 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 8 SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 SDLV +++ + L++ + + +F I D+AV+G+ + I F F V+ K +R GRN Sbjct: 4 SDLVDAAVAADDKLTKTQAKAIIDGVFKSISDAAVKGDEVSIPGFGKFKVQAKPARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + V F + LK + Sbjct: 64 PATGATIEIAASKKVAFTPAKQLKDAV 90 >gi|253701606|ref|YP_003022795.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|251776456|gb|ACT19037.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E L++ D+ + + + + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLAAGDKVTLVGFGTFSVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT ++++I FK + LK + Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLV 89 >gi|123440689|ref|YP_001004681.1| transcriptional regulator HU subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332159925|ref|YP_004296502.1| transcriptional regulator HU subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087650|emb|CAL10432.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607524|emb|CBY29022.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp. palearctica Y11] gi|325664155|gb|ADZ40799.1| transcriptional regulator HU subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863075|emb|CBX73206.1| DNA-binding protein HU-alpha [Yersinia enterocolitica W22703] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|331268343|ref|YP_004394835.1| histone family protein DNA-binding protein [Clostridium botulinum BKT015925] gi|329124893|gb|AEB74838.1| histone family protein DNA-binding protein [Clostridium botulinum BKT015925] Length = 92 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ + G+ +++ F TF +++ R G Sbjct: 1 MNKAELITSMAEKSQLTKKDAEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E+ I V VFKA K+ Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87 >gi|317046455|ref|YP_004114103.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] gi|316948072|gb|ADU67547.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKTALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|255011460|ref|ZP_05283586.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis 3_1_12] gi|313149278|ref|ZP_07811471.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12] gi|313138045|gb|EFR55405.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + F+ + + G+ I + F TF V ++ R G Sbjct: 1 MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERAERSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + + I ++V FK + L I Sbjct: 61 INPSTKKAIIIPAKKVAKFKPGAELADAI 89 >gi|187930619|ref|YP_001901106.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|241664809|ref|YP_002983169.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|309780383|ref|ZP_07675134.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] gi|187727509|gb|ACD28674.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|240866836|gb|ACS64497.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|308921086|gb|EFP66732.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] Length = 92 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S +G+A+ + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|319404926|emb|CBI78526.1| integration host factor beta chain [Bartonella sp. AR 15-3] Length = 92 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S LV+ I++ L ++D+ V+ +F EI + G+ +++ F F +K + +R Sbjct: 1 MVKSKLVQIIARHNPHLMQRDAENVVSAIFEEISAALANGQRVELRGFGAFSIKARSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGEAVMVEEKWVPFFKTGKDLRDRL 90 >gi|293394036|ref|ZP_06638340.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] gi|291423476|gb|EFE96701.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|284050974|ref|ZP_06381184.1| nucleoid protein Hbs [Arthrospira platensis str. Paraca] gi|291567416|dbj|BAI89688.1| DNA-binding protein [Arthrospira platensis NIES-39] Length = 98 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ S + G+++K + ++ + I D+ GE + + F +F + + +R G Sbjct: 1 MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVADGEKVTLVGFGSFEARHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T Q + I V F A K+R+ ++ Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANE 92 >gi|83749477|ref|ZP_00946468.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|207722088|ref|YP_002252526.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum MolK2] gi|207744856|ref|YP_002261248.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum IPO1609] gi|300689790|ref|YP_003750785.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] gi|300702469|ref|YP_003744069.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|83723874|gb|EAP71061.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|206587262|emb|CAQ17846.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum MolK2] gi|206596266|emb|CAQ63193.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum IPO1609] gi|299070130|emb|CBJ41420.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|299076850|emb|CBJ49462.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S +G+A+ + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|257451958|ref|ZP_05617257.1| histone-like DNA-binding protein [Fusobacterium sp. 3_1_5R] gi|257467237|ref|ZP_05631548.1| histone-like DNA-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918366|ref|ZP_07914606.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|317058507|ref|ZP_07922992.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313684183|gb|EFS21018.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313692241|gb|EFS29076.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] Length = 93 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V +++K+ ++ K++ + V + +S V G +K F ++ K++ +R Sbjct: 1 MTKKEFVAALAKKAEVTGKEADKMVKCFLELVEESLVAGNDVKFIGFGSWETKKREARKL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI +RVV FK L ++ Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKV 89 >gi|220904362|ref|YP_002479674.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868661|gb|ACL48996.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ + L++ + R + + D+ V+ + ++ F TF V+ + +R G Sbjct: 1 MTKADLVEKIAAKANLTKAAAERTLNAFLASVEDALVKESKLTLTGFGTFAVEHRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I +++ F+ ILK Sbjct: 61 RNPRTGDTLTIPACKIIKFRPGKILK 86 >gi|104781016|ref|YP_607514.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48] gi|95110003|emb|CAK14708.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + +G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI +V FKA LK + Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAV 89 >gi|313673034|ref|YP_004051145.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939790|gb|ADR18982.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ I+ + GL + ++ + + + ++ G+ + + F TF V ++ +R G Sbjct: 1 MNKKDLIEKIATKAGLKKVEAEKALEAFEEAVVEALKSGDKVTLVGFGTFSVYERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI ++ F + K Sbjct: 61 RNPQTGKEIKIPAKKAPKFTPGKLFK 86 >gi|197335248|ref|YP_002155560.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] gi|197316738|gb|ACH66185.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I++ +S+ + R + L + ++ G+ + + F +F V+++ +R G Sbjct: 1 MNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I +V FKA LK Sbjct: 61 RNPKTGEAIEISAAKVPAFKAGKALK 86 >gi|49474845|ref|YP_032886.1| integration host factor subunit beta [Bartonella henselae str. Houston-1] gi|49237650|emb|CAF26830.1| Integration host factor beta-subunit [Bartonella henselae str. Houston-1] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + V G +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALVNGNRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + + FK L+ R+ Sbjct: 61 GRNPRTGEAVMVEEKWIPFFKTGKDLRDRL 90 >gi|197117663|ref|YP_002138090.1| histone-like protein [Geobacter bemidjiensis Bem] gi|197087023|gb|ACH38294.1| histone-like protein [Geobacter bemidjiensis Bem] Length = 91 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E L++ D+ + + + + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLATGDKVTLVGFGTFSVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT ++++I FK + LK + Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLV 89 >gi|167621831|ref|YP_001676616.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167351572|gb|ABZ74302.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Query: 8 SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 SDL+ +++ E L++ + + +F + +AV+GE I I F F V+ K +R GRN Sbjct: 4 SDLIDAAVAAEPKLTKAQAKAIIDGVFKSLTAAAVKGEEISIPGFGKFKVQAKPARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + V F + LK + Sbjct: 64 PATGGTIQIAASKKVAFTPAKQLKDAV 90 >gi|322834808|ref|YP_004214835.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] gi|321170009|gb|ADW75708.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKVALESTLSAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|86131320|ref|ZP_01049919.1| DNA-binding protein HU [Dokdonia donghaensis MED134] gi|332292027|ref|YP_004430636.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|85818731|gb|EAQ39891.1| DNA-binding protein HU [Dokdonia donghaensis MED134] gi|332170113|gb|AEE19368.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 96 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +S++ G+ + D + + E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKVSEKLGIEKNDVQATIESFMEEVKTSLEGGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|89075365|ref|ZP_01161787.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34] gi|90581302|ref|ZP_01237099.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14] gi|89048914|gb|EAR54483.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34] gi|90437541|gb|EAS62735.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I V F A LK Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALK 86 >gi|121602248|ref|YP_989618.1| integration host factor subunit beta [Bartonella bacilliformis KC583] gi|120614425|gb|ABM45026.1| integration host factor, beta subunit [Bartonella bacilliformis KC583] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++ L ++D V T+F EI + +G I++ F F VK + +R Sbjct: 1 MIKSELIQIIARRNPHLLQRDVENIVNTVFEEISIALAKGHRIELRGFGAFSVKNRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWVPSFKTGKELRDRL 90 >gi|320106540|ref|YP_004182130.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] gi|319925061|gb|ADV82136.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] Length = 89 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ I GL R + +F+ + + G+ I++ F F VK + + +G Sbjct: 1 MIKQDLIQRIVDRSGLPRTKAEAATDVIFDTMKKAMASGDRIELRGFGVFTVKPRKTGIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T EV I+P + V FK L+ Sbjct: 61 RNPRTGAEVSIEPGKAVRFKPGKDLQ 86 >gi|86134967|ref|ZP_01053549.1| DNA-binding protein [Polaribacter sp. MED152] gi|85821830|gb|EAQ42977.1| DNA-binding protein [Polaribacter sp. MED152] Length = 96 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS + G+ + D V E+ D+ G+ + + F +F +K + + G Sbjct: 1 MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKDALENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N +KI + FK + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82 >gi|302668567|ref|YP_003833015.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302397531|gb|ADL36433.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 94 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 4/97 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+K+ GL++ S + V + + + +++ F TF ++ +R G Sbjct: 1 MNKTELVEAIAKQTGLTKAASEKAVKAFTDVVTKELKKKGKVQLVGFGTFETAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +N QT +KI V FKA LK D + G K Sbjct: 61 KNPQTGAAIKIPAATVPKFKAGKALK----DTVNGNK 93 >gi|160882775|ref|ZP_02063778.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483] gi|293373985|ref|ZP_06620326.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|299145603|ref|ZP_07038671.1| HimA protein [Bacteroides sp. 3_1_23] gi|156111799|gb|EDO13544.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483] gi|292631061|gb|EFF49698.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|298516094|gb|EFI39975.1| HimA protein [Bacteroides sp. 3_1_23] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD++ + +L + + G I I F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVIAIQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90 >gi|323142051|ref|ZP_08076899.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067] gi|322413438|gb|EFY04309.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067] Length = 118 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GL++KD + +T + + +G+ +++ F TF + + R G Sbjct: 27 MNKTELIAAVAEKAGLTKKDVEKTITATLETVKEVVAKGDKVQVVGFGTFEARARKEREG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N Q ++V I + FKA K Sbjct: 87 KNPQNGEKVVIPAATIPAFKAGKAFK 112 >gi|294668835|ref|ZP_06733928.1| DNA-binding protein HU-beta [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309352|gb|EFE50595.1| DNA-binding protein HU-beta [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 89 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++E +S+ + + + + N I ++ +G+ + + F +F+V ++ R G Sbjct: 1 MNKSELIEAMAQEADISKAAAAKALDGMVNAITEALKKGDTVTLVGFGSFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKSLK 86 >gi|163750455|ref|ZP_02157694.1| DNA-binding protein, HU family [Shewanella benthica KT99] gi|161329776|gb|EDQ00764.1| DNA-binding protein, HU family [Shewanella benthica KT99] Length = 91 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + +++LV +++ L++ ++ R + + F E +A++ G+ I I F +F + +R+ Sbjct: 1 MNKTELVAKMAENADLTKTEAARALKS-FEETITAALKSGDKISIIGFGSFETTNRAARI 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E++I V FKA LK Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLK 86 >gi|114330676|ref|YP_746898.1| histone family protein DNA-binding protein [Nitrosomonas eutropha C91] gi|114307690|gb|ABI58933.1| histone family protein DNA-binding protein [Nitrosomonas eutropha C91] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++ +++ ++ + + I D+ + +++ + F TF V ++ +R G Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+KI +V F A LK + Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89 >gi|260878351|ref|ZP_05890706.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] gi|308092754|gb|EFO42449.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] Length = 86 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 43/81 (53%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 LV+ I++ +S+ + R + + + G+ + + F TF V+ + +R GRN +T Sbjct: 2 LVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGRNPKT 61 Query: 70 NQEVKIDPRRVVVFKASSILK 90 +E++I +V FKA LK Sbjct: 62 GEEIQIAEAKVPAFKAGKALK 82 >gi|16762287|ref|NP_457904.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767424|ref|NP_463039.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143775|ref|NP_807117.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415996|ref|YP_153071.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182621|ref|YP_219038.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157147203|ref|YP_001454522.1| transcriptional regulator HU subunit alpha [Citrobacter koseri ATCC BAA-895] gi|161505342|ref|YP_001572454.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617309|ref|YP_001591274.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553826|ref|ZP_02347570.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234408|ref|ZP_02659466.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239596|ref|ZP_02664654.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245126|ref|ZP_02670058.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264574|ref|ZP_02686547.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467898|ref|ZP_02701735.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823116|ref|ZP_02835116.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445718|ref|YP_002043418.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450276|ref|YP_002048155.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472167|ref|ZP_03078151.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737577|ref|YP_002117071.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249995|ref|YP_002149078.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265623|ref|ZP_03165697.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364923|ref|YP_002144560.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243874|ref|YP_002218086.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387831|ref|ZP_03214443.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931262|ref|ZP_03222022.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354428|ref|YP_002228229.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859348|ref|YP_002245999.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051532|ref|ZP_03344410.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420368|ref|ZP_03353434.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428479|ref|ZP_03361229.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586806|ref|ZP_03368632.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609700|ref|ZP_03369526.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647192|ref|ZP_03377245.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855082|ref|ZP_03383322.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585710|ref|YP_002639509.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|237727864|ref|ZP_04558345.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2] gi|238913748|ref|ZP_04657585.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283787327|ref|YP_003367192.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168] gi|283836739|ref|ZP_06356480.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] gi|289804949|ref|ZP_06535578.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826727|ref|ZP_06545692.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392169|sp|P0A1R6|DBHA_SALTY RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|60392170|sp|P0A1R7|DBHA_SALTI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|25294362|pir||AH0931 histone like DNA-binding protein HU-alpha (NS2) (HU-2) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|154139|gb|AAA27147.1| histone-like protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960343|gb|AAF33503.1| Salmonella typhimurium DNA-binding protein HU-2 (HUPA) (SW:P15148); contains similarity to Pfam domain PF00216 (BAC_DBA_binding), Score=182.9, E=1.7e-51, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422729|gb|AAL22998.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504591|emb|CAD09474.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Typhi] gi|29139410|gb|AAO70977.1| histone like DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130253|gb|AAV79759.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130254|gb|AAX67957.1| DNA-binding protein HU-alpha (HU-2) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157084408|gb|ABV14086.1| hypothetical protein CKO_02986 [Citrobacter koseri ATCC BAA-895] gi|160866689|gb|ABX23312.1| hypothetical protein SARI_03487 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366673|gb|ABX70441.1| hypothetical protein SPAB_05160 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404381|gb|ACF64603.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408580|gb|ACF68799.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458531|gb|EDX47370.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713079|gb|ACF92300.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629006|gb|EDX48398.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096400|emb|CAR62005.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213698|gb|ACH51095.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243878|gb|EDY26498.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287722|gb|EDY27113.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938390|gb|ACH75723.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604929|gb|EDZ03474.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319877|gb|EDZ05084.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274209|emb|CAR39227.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321830|gb|EDZ09669.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331654|gb|EDZ18418.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336108|gb|EDZ22872.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340578|gb|EDZ27342.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346968|gb|EDZ33599.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711151|emb|CAR35525.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470238|gb|ACN48068.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226910421|gb|EEH96339.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2] gi|261249274|emb|CBG27136.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996471|gb|ACY91356.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|282950781|emb|CBG90457.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168] gi|291067290|gb|EFE05399.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] gi|301160666|emb|CBW20197.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915276|dbj|BAJ39250.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223370|gb|EFX48437.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616279|gb|EFY13189.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617278|gb|EFY14180.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625950|gb|EFY22765.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626652|gb|EFY23454.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631487|gb|EFY28244.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635200|gb|EFY31918.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642595|gb|EFY39191.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646806|gb|EFY43310.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650804|gb|EFY47197.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655896|gb|EFY52197.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657295|gb|EFY53574.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665557|gb|EFY61742.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669740|gb|EFY65885.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670981|gb|EFY67113.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679195|gb|EFY75248.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679353|gb|EFY75400.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688120|gb|EFY84084.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717118|gb|EFZ08689.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132506|gb|ADX19936.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193388|gb|EFZ78598.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200692|gb|EFZ85765.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202181|gb|EFZ87237.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209292|gb|EFZ94227.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211617|gb|EFZ96454.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218045|gb|EGA02758.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221334|gb|EGA05756.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225739|gb|EGA09960.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230973|gb|EGA15090.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235755|gb|EGA19837.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240069|gb|EGA24115.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242598|gb|EGA26620.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249694|gb|EGA33601.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252577|gb|EGA36418.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256929|gb|EGA40641.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262048|gb|EGA45612.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263946|gb|EGA47460.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268441|gb|EGA51911.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625879|gb|EGE32224.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629560|gb|EGE35903.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990989|gb|AEF09972.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|261855011|ref|YP_003262294.1| histone family protein DNA-binding protein [Halothiobacillus neapolitanus c2] gi|261835480|gb|ACX95247.1| histone family protein DNA-binding protein [Halothiobacillus neapolitanus c2] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ + G+ + +S + + D+ +G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIDAMAAKSGMKKTESAAALDAFIEAVGDALKKGDQVTLVGFGTFLVREREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + ++I R+ FKA LK + Sbjct: 61 RNPRSGETIEIAASRLPSFKAGKGLKDAV 89 >gi|126657689|ref|ZP_01728843.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|126620906|gb|EAZ91621.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] Length = 93 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV IS + L++K+++ + L + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEELVNMISAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N QT Q + I V F A + K+++++ + Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93 >gi|118579779|ref|YP_901029.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118502489|gb|ABK98971.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +E L+ K S V T+F+ I D+ G+ ++I F +F ++++ R Sbjct: 1 MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + V I ++ FK LK+R+ Sbjct: 61 ARNPKSGEVVSIPAKKTPFFKTGKDLKERV 90 >gi|117925411|ref|YP_866028.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609167|gb|ABK44622.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 109 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 45/84 (53%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ I+++ LS T V L + + D R E + + F F VK+ +GR+ QT Sbjct: 6 LIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLGRHPQT 65 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + +K+ + V FK+ S L+KR+ Sbjct: 66 GEMMKLPGKNVPFFKSDSELRKRL 89 >gi|157828936|ref|YP_001495178.1| integration host factor alpha-subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933660|ref|YP_001650449.1| integration host factor subunit alpha [Rickettsia rickettsii str. Iowa] gi|75487853|sp|Q9AKF3|HLP_RICRI RecName: Full=Histone-like DNA-binding protein gi|13235508|emb|CAC33712.1| Integration host factor alpha-subunit [Rickettsia rickettsii] gi|157801417|gb|ABV76670.1| integration host factor alpha-subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908747|gb|ABY73043.1| integration host factor alpha-subunit [Rickettsia rickettsii str. Iowa] Length = 95 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + A + + + + +F +F VKQK R Sbjct: 2 TITKAKIAAMLSSKLGFSNHLCEEIVHTVFSNILEIA-KAQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 61 GINFHTKALVIIESKKHLRFVPSSKLKALINESTR 95 >gi|152967315|ref|YP_001363099.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151361832|gb|ABS04835.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS+LV ++++ GL++ D+ + L + + ++ +GEA+K+ T ++ +R G Sbjct: 1 MNRSELVTAVAQRAGLTQTDTDAVINALGDVLVEAVAKGEAVKLPGLMTVERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I A S LK Sbjct: 61 RNPRTGETMEIAASYGAKLTAGSKLK 86 >gi|319936472|ref|ZP_08010888.1| DNA-binding protein HU [Coprobacillus sp. 29_1] gi|319808587|gb|EFW05139.1| DNA-binding protein HU [Coprobacillus sp. 29_1] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +S++ L++KD+ V T+F+ + +S + G+ + IS F TF V + R G Sbjct: 1 MNKKELIDIVSQKKDLTKKDAEALVDTVFDTMIESILEGDKVLISGFGTFKVNSRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 + +T + + I + V FK S+ LK Sbjct: 61 VSPKTKEMMIIPASKTVSFKPSNRLK 86 >gi|50119198|ref|YP_048365.1| transcriptional regulator HU subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49609724|emb|CAG73158.1| DNA-binding protein HU-alpha [Pectobacterium atrosepticum SCRI1043] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|114706456|ref|ZP_01439358.1| integration host factor beta subunit [Fulvimarina pelagi HTCC2506] gi|114538317|gb|EAU41439.1| integration host factor beta subunit [Fulvimarina pelagi HTCC2506] Length = 93 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ +++ F F VK + R Sbjct: 1 MIKSELVQVIANRNPHLYQRDVEMIVNAIFDEITEALCESNRVELRGFGAFSVKNRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK L++R+ Sbjct: 61 GRNPRTGEAVEVSEKWVPFFKPGKELRERL 90 >gi|71278799|ref|YP_269056.1| integration host factor subunit beta [Colwellia psychrerythraea 34H] gi|123761027|sp|Q482G2|IHFB_COLP3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|71144539|gb|AAZ25012.1| integration host factor, beta subunit [Colwellia psychrerythraea 34H] Length = 95 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + LS K+ + + + + S +GE I+I F +F + + RV Sbjct: 1 MTKSELIEKLADKLSHLSAKEVEKSIKEILELMAQSLSKGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK L++R+ Sbjct: 61 GRNPKTGESVELSGKYVPHFKPGKELRERV 90 >gi|222084668|ref|YP_002543197.1| integration host factor, beta subunit [Agrobacterium radiobacter K84] gi|254803525|sp|B9J885|IHFB_AGRRK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|221722116|gb|ACM25272.1| integration host factor, beta subunit [Agrobacterium radiobacter K84] Length = 102 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK L++R+ Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERL 90 >gi|309787032|ref|ZP_07681644.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617] gi|308924610|gb|EFP70105.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617] gi|332760731|gb|EGJ91019.1| DNA-binding protein HU-beta [Shigella flexneri 4343-70] gi|332768362|gb|EGJ98546.1| DNA-binding protein HU-&beta, NS1 [Shigella flexneri 2930-71] Length = 85 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 44/84 (52%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ I+ +S+ + R + + + +S G+ + + F TF VK++ +R GRN QT Sbjct: 1 MIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+ I +V F+A LK + Sbjct: 61 GKEITIAAAKVPSFRAGKALKDAV 84 >gi|319786988|ref|YP_004146463.1| integration host factor subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317465500|gb|ADV27232.1| integration host factor, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 103 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ + L +D V +L + S GE I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQSHLKAEDVDLAVKSLLEMMAGSLASGERIEIRGFGSFSLHYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + + V FKA L++++ D Sbjct: 61 GRNPKTGESVALPGKHVPHFKAGKELREKVSD 92 >gi|253681243|ref|ZP_04862041.1| DNA-binding protein HU [Clostridium botulinum D str. 1873] gi|253562481|gb|EES91932.1| DNA-binding protein HU [Clostridium botulinum D str. 1873] Length = 92 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ + G+ +++ F TF +++ R G Sbjct: 1 MNKAELITSMAEKSQLTKKDAEVALRAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E+ I V VFKA K+ Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87 >gi|260061540|ref|YP_003194620.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] gi|88785672|gb|EAR16841.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] Length = 96 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS+E G+ + D V + S G+ + + F +F +K + + G Sbjct: 1 MTKADIVSIISEELGMEKGDVQATVEKFMEAVKSSLENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|15893011|ref|NP_360725.1| integration host factor alpha-subunit [Rickettsia conorii str. Malish 7] gi|34581296|ref|ZP_00142776.1| integration host factor alpha-subunit [Rickettsia sibirica 246] gi|229587067|ref|YP_002845568.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5] gi|81527945|sp|Q92GN5|HLP_RICCN RecName: Full=Histone-like DNA-binding protein gi|15620211|gb|AAL03626.1| integration host factor alpha-subunit [Rickettsia conorii str. Malish 7] gi|28262681|gb|EAA26185.1| integration host factor alpha-subunit [Rickettsia sibirica 246] gi|228022117|gb|ACP53825.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5] Length = 95 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + A + + + + +F +F VKQK R Sbjct: 2 TITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIA-KEQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95 >gi|254455329|ref|ZP_05068758.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082331|gb|EDZ59757.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp. HTCC7211] Length = 99 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+ DLV + + G S++ S + + I + + +K+S F TF ++QK Sbjct: 1 MRINLTKKDLVNLVYMQLGFSKQISENLIEDFLSTIIKNIKLEKKLKLSKFGTFSIRQKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 SR+GRN +T + I R VV+FK S Sbjct: 61 SRIGRNPKTKESKIISSRDVVLFKPS 86 >gi|85859156|ref|YP_461358.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85722247|gb|ABC77190.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ I++E G+++ +++ + + N + + + + F TF V + +R G Sbjct: 1 MTKAELISVIAEEAGITKASASKALESYVNTVAKELNKTGKLGLVGFGTFSVVMREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI ++VV FK L ++I Sbjct: 61 RNPQTGDIIKIPAKKVVKFKPGKELSEKI 89 >gi|317487172|ref|ZP_07945973.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316921573|gb|EFV42858.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 109 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+ DLV+ I+K +S ++ R + + + + ++ + T V + Sbjct: 1 MASKSTKKDLVQHIAKALEVSPVEAERVMLVVMRYVRRQLLEDTSVILPGIGTLAVTETA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 +R+GRN T Q V I PR+ + K S LK+ Sbjct: 61 ARLGRNPHTGQPVPIPPRKTIKLKVSKDLKE 91 >gi|157368539|ref|YP_001476528.1| transcriptional regulator HU subunit alpha [Serratia proteamaculans 568] gi|157320303|gb|ABV39400.1| histone family protein DNA-binding protein [Serratia proteamaculans 568] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|119896606|ref|YP_931819.1| DNA-binding protein HU [Azoarcus sp. BH72] gi|119669019|emb|CAL92932.1| DNA-binding protein HU (DNA-binding protein II) [Azoarcus sp. BH72] Length = 91 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V++++ +SR + R ++ + + I + +GE + + F +F V ++ +R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSAVLDIISEQLGKGEKVAFTGFGSFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I V F A + LK + Sbjct: 61 RNPQTGATIDIAASSVPKFTAGATLKAAV 89 >gi|292490562|ref|YP_003526001.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291579157|gb|ADE13614.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 94 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++ E LS+ D+ R V L I + + + F +F V+++ +R G Sbjct: 1 MNKTELVNFVASEANLSQADAQRAVNALLQTIEQTLGEKGMVSLVGFGSFSVQKRSARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ QT + + I V VFK LK+ + R Sbjct: 61 RHPQTGETITIPATNVPVFKPGKALKEAVQQRKR 94 >gi|171909880|ref|ZP_02925350.1| putative integration host factor alpha-subunit [Verrucomicrobium spinosum DSM 4136] Length = 104 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ DLV +S GL++ + + I + +G + + F TF V+ ++ Sbjct: 3 TVTKRDLVVELSNRTGLTQSQAFDLFQQALDLITEELAKGNEVTLRRFGTFEVRVTKPKI 62 Query: 64 GRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + E++I PR VV FK +K ++ Sbjct: 63 GRNPNKPGSEMQIPPRTVVRFKPGKEMKAQV 93 >gi|119946824|ref|YP_944504.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37] gi|119865428|gb|ABM04905.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37] Length = 91 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + DS GE +++ F TF V + +R G Sbjct: 1 MNKTQLITDIAEKAELTKVQAKAALEQMMTSVTDSLKDGEPVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +++I V F A LK+ + Sbjct: 61 RNPQTGADIQIKAANVPAFVAGKSLKEAV 89 >gi|146282421|ref|YP_001172574.1| DNA-binding protein HU [Pseudomonas stutzeri A1501] gi|145570626|gb|ABP79732.1| DNA-binding protein HU [Pseudomonas stutzeri A1501] gi|327480676|gb|AEA83986.1| DNA-binding protein HU [Pseudomonas stutzeri DSM 4166] Length = 90 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++ FKA LK + Sbjct: 61 RNPQTGKPINIAAAKIPGFKAGKALKDAV 89 >gi|298368578|ref|ZP_06979896.1| integration host factor, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282581|gb|EFI24068.1| integration host factor, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 104 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAEKNGTHLMAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|238918150|ref|YP_002931664.1| transcriptional regulator HU subunit alpha [Edwardsiella ictaluri 93-146] gi|238867718|gb|ACR67429.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146] Length = 90 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|226197835|ref|ZP_03793409.1| integration host factor, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|254295622|ref|ZP_04963080.1| integration host factor, beta subunit [Burkholderia pseudomallei 406e] gi|157805552|gb|EDO82722.1| integration host factor, beta subunit [Burkholderia pseudomallei 406e] gi|225930023|gb|EEH26036.1| integration host factor, beta subunit [Burkholderia pseudomallei Pakistan 9] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 43/71 (60%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 KD+ V T+ + + D+ +G I+I F +F + ++ +RVGRN ++ ++V++ + V Sbjct: 3 KDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKHVPH 62 Query: 83 FKASSILKKRI 93 FK L++R+ Sbjct: 63 FKPGKELRERV 73 >gi|46580205|ref|YP_011013.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120602409|ref|YP_966809.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46449622|gb|AAS96272.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120562638|gb|ABM28382.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311233808|gb|ADP86662.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ + L++ + R + + + D + ++ F TF V+ + R G Sbjct: 1 MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDVLASEGKLTLTGFGTFAVESRQERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T E+KI +VV F+ LK Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLK 86 >gi|115524524|ref|YP_781435.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] gi|115518471|gb|ABJ06455.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] Length = 103 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 IT L +++++ +S+K S ++ L I +GE I+I V+++ +R G Sbjct: 15 ITLKHLAAALAEDHEMSKKKSEEILSDLVGAITKHLKKGERIRIVGLGILQVRKRAARTG 74 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I + V F+A+ LK+ + Sbjct: 75 RNPATGEPIQIKASKKVAFRAAKELKEAV 103 >gi|51244752|ref|YP_064636.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54] gi|50875789|emb|CAG35629.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54] Length = 97 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 50/95 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + + D++ S+S+E + ++D + + I ++ R +++ F +F V+ + R Sbjct: 2 KRMLKKDIIDSVSEELSMQKQDVSVAADVILETISNALARDRRVELRGFGSFSVRSRKPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +N +T Q + I RR + F S LK+ ++ DM Sbjct: 62 TTKNPRTGQVMDIPERRTLHFTMSKSLKESLISDM 96 >gi|298373014|ref|ZP_06983004.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str. F0058] gi|298275918|gb|EFI17469.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str. F0058] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLVK+I+ E GLS+ DS + + N + S V+GE++ + F TF V ++ +R G Sbjct: 1 MNKQDLVKAIATEAGLSQVDSKKALEAFENAVKKSLVKGESVTMIGFGTFSVVKRAARKG 60 Query: 65 RNLQTNQEVKI 75 N + ++I Sbjct: 61 INPANGKPLQI 71 >gi|317154852|ref|YP_004122900.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316945103|gb|ADU64154.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 95 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 45/83 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ +V I + +R + V T+ + S + A+ +S F F K +R Sbjct: 3 TLTKAGIVDYIYERTESNRAEIKDLVETILEIMKTSIKKDHALLVSGFGKFEAYDKRARK 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 GRN QT+Q + + PR+VVVF+ S Sbjct: 63 GRNPQTSQTITLPPRKVVVFRLS 85 >gi|218780729|ref|YP_002432047.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218762113|gb|ACL04579.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 89 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL++ ++K G ++KD+ V +F I ++ + +A+ + F TF V ++ +R G Sbjct: 1 MNKADLIEEVAKVLG-TKKDAQAAVDCVFATISEALKKDDAVTLVGFGTFKVDKRQARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I R V F LK + Sbjct: 60 RNPRTGEALDIPARNVPKFNPGKALKDAV 88 >gi|154493959|ref|ZP_02033279.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC 43184] gi|154086219|gb|EDN85264.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC 43184] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS L+ ++++ GL++KD R + + I G+ I + F +F + + SR Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RNL+ V++ PR ++ FK + L Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHL 85 >gi|150003567|ref|YP_001298311.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482] gi|254881205|ref|ZP_05253915.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA] gi|294777624|ref|ZP_06743075.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|319640215|ref|ZP_07994941.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A] gi|149931991|gb|ABR38689.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482] gi|254833998|gb|EET14307.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA] gi|294448692|gb|EFG17241.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|317388202|gb|EFV69055.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ E GLS+ D+ + V + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALQEGDKVSLIGFGTFSVAERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + I ++V FK + L I Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAI 89 >gi|328543684|ref|YP_004303793.1| Histone-like DNA-binding protein [polymorphum gilvum SL003B-26A1] gi|326413428|gb|ADZ70491.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F+ + + G+ ++I F F V ++ + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTATLKAGDEVRIIGFGNFSVSERAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI + FKA LK + Sbjct: 61 RNPRTGETIKIPASKTPKFKAGKGLKDAV 89 >gi|325274292|ref|ZP_08140403.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51] gi|324100575|gb|EGB98310.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + + + + + + + G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAVSADISKAAAGKALDAVIDSVTGALKAGDDVVLVGFGTFTVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI +V FKA LK + Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAV 89 >gi|94971969|ref|YP_594009.1| histone-like DNA-binding protein [Deinococcus geothermalis DSM 11300] gi|94554020|gb|ABF43935.1| histone-like protein DNA-binding protein [Deinococcus geothermalis DSM 11300] Length = 149 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I ++ LV ++ + GL++K S V+ + + D+ +G+++ + T VK +R G Sbjct: 51 IAKTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTG 110 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T++ ++I + V FK +S LK + Sbjct: 111 VRPGTSERIQIPAGKKVAFKVASTLKSSL 139 >gi|48477447|ref|YP_023153.1| DNA-binding protein [Picrophilus torridus DSM 9790] gi|48430095|gb|AAT42960.1| DNA-binding protein [Picrophilus torridus DSM 9790] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 45/83 (54%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K+++K+ ++K + + E+ A G+ I ++ F F K + R RN Sbjct: 5 SELSKTVAKKTDTTQKKARDVIREFLAEVVSQADSGQKINLAGFGIFERKTQSPRTARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT E+K+ ++ VF+ASS +K Sbjct: 65 QTRAEIKVPAKKKFVFRASSKIK 87 >gi|319645785|ref|ZP_08000015.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] gi|317391535|gb|EFV72332.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 44/71 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ L++KD V + F+ I + GE +K+ F +F V+++ +R G Sbjct: 1 MNKKELIGAVAEATELTKKDVELVVDSTFDVITSALKDGEKVKVHGFGSFEVRERAARKG 60 Query: 65 RNLQTNQEVKI 75 RN Q+ +E++I Sbjct: 61 RNPQSGEEIEI 71 >gi|329119849|ref|ZP_08248523.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC BAA-1200] gi|327464005|gb|EGF10316.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC BAA-1200] Length = 89 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++E +S+ + + + + N I + +G+ + + F +F+V ++ R G Sbjct: 1 MNKSELIEAMAQEADISKAAAAKALDGMVNAITAALKKGDTVTVVGFGSFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKTLK 86 >gi|237801808|ref|ZP_04590269.1| integration host factor, beta subunit, putative [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024667|gb|EGI04723.1| integration host factor, beta subunit, putative [Pseudomonas syringae pv. oryzae str. 1_6] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + ++ +I+++ +++ + + + + EI + R E++ + F TF + +G+R G+N Sbjct: 3 KPEVAAAIAEKADITKDQAKKVLDAILEEITGALHRKESVTLVGFGTFLQRHRGARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 63 PQTGEPVKIKASNTVAFKPGKSLK 86 >gi|149193907|ref|ZP_01871005.1| non-specific DNA-binding protein [Caminibacter mediatlanticus TB-2] gi|149135860|gb|EDM24338.1| non-specific DNA-binding protein [Caminibacter mediatlanticus TB-2] Length = 102 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 45/87 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV +++++ GLS+KD + I ++ GE + F +F V + RV R Sbjct: 3 KSDLVAAVAEKTGLSKKDVAAVIDATIETIQEALKNGEKVSFIGFGSFEVVTRAPRVARV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T +E+KI + V FK LK+ + Sbjct: 63 PGTGKEIKIPETKSVKFKVGKKLKELV 89 >gi|71909124|ref|YP_286711.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71848745|gb|AAZ48241.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 99 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +S+LV+ +KE G+++ + + ++ + + + +GE++ + F TF ++ +R G+N Sbjct: 3 KSELVEVAAKEAGITKAAADKALSAIIGAVVATVTKGESVTLVGFGTFKSAKRAARTGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T +KI V F A + K + Sbjct: 63 PKTGATLKIPATTVPKFTAGTAFKASV 89 >gi|261855928|ref|YP_003263211.1| integration host factor subunit beta [Halothiobacillus neapolitanus c2] gi|261836397|gb|ACX96164.1| integration host factor, beta subunit [Halothiobacillus neapolitanus c2] Length = 101 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ ++ LS +D V + +E+ S RG+ I+I F +F + + R+ Sbjct: 1 MTKSELIDRLADRQKYLSIRDIDTSVKLMLDEMISSMSRGDRIEIRGFGSFSLNYRKPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V +D + V FK L++R+ Sbjct: 61 GRNPKSGESVALDSKYVPHFKPGKELRERV 90 >gi|167562417|ref|ZP_02355333.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia oklahomensis EO147] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+++ LS+ + R + L + ++ +G A+ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQQGGAVTLVGFGTFEVGKRAARGG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 R+ +T ++I V F+A LK Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALK 86 >gi|296140540|ref|YP_003647783.1| histone family protein DNA-binding protein [Tsukamurella paurometabola DSM 20162] gi|296028674|gb|ADG79444.1| histone family protein DNA-binding protein [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++++ G R+ + V + + I + G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIEELTEKLGTDRRTAGAAVEAIVDTIVRAVHAGDSVTITGFGVFEQRKRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P V F+ + K I Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >gi|34498009|ref|NP_902224.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC 12472] gi|34103864|gb|AAQ60224.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC 12472] Length = 89 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ E +S+ + + + + + + +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIDAIAAEADISKAAAAKALDGMVAAVTSALKKGDTVTLVGFGTFYVGERAERSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI R F+A LK Sbjct: 61 RNPKTGATIKIPAARSPKFRAGKALK 86 >gi|17231427|ref|NP_487975.1| DNA binding protein HU [Nostoc sp. PCC 7120] gi|75907988|ref|YP_322284.1| nucleoid protein Hbs [Anabaena variabilis ATCC 29413] gi|186685101|ref|YP_001868297.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] gi|2506517|sp|P05514|DBH_ANASP RecName: Full=DNA-binding protein HU gi|31615985|pdb|1P51|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615986|pdb|1P51|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615987|pdb|1P51|C Chain C, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615988|pdb|1P51|D Chain D, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615997|pdb|1P71|A Chain A, Anabaena Hu-Dna Corcrystal Structure (Tr3) gi|31615998|pdb|1P71|B Chain B, Anabaena Hu-Dna Corcrystal Structure (Tr3) gi|31616001|pdb|1P78|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu2) gi|31616002|pdb|1P78|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu2) gi|1408581|gb|AAB06445.1|AAB06445 HU protein [Nostoc sp. PCC 7120] gi|998920|gb|AAB34352.1| HU [Anabaena] gi|17133069|dbj|BAB75634.1| DNA binding protein HU [Nostoc sp. PCC 7120] gi|75701713|gb|ABA21389.1| bacterial nucleoid protein Hbs [Anabaena variabilis ATCC 29413] gi|186467553|gb|ACC83354.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] Length = 94 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKV 89 >gi|251791422|ref|YP_003006143.1| transcriptional regulator HU subunit alpha [Dickeya zeae Ech1591] gi|271498813|ref|YP_003331838.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|307129002|ref|YP_003881018.1| HU, DNA-binding transcriptional regulator, subunit alpha [Dickeya dadantii 3937] gi|247540043|gb|ACT08664.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591] gi|270342368|gb|ACZ75133.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|306526531|gb|ADM96461.1| HU, DNA-binding transcriptional regulator, alpha subunit [Dickeya dadantii 3937] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|118443809|ref|YP_877121.1| DNA binding protein HU [Clostridium novyi NT] gi|118134265|gb|ABK61309.1| DNA binding protein HU [Clostridium novyi NT] Length = 92 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 49/87 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD + + ++ + G+ +++ F TF +++ R G Sbjct: 1 MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E+ I V VFKA K+ Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKE 87 >gi|24372142|ref|NP_716184.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] gi|24346038|gb|AAN53629.1|AE015502_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ +TR + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAQATRALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA L+ Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86 >gi|270265438|ref|ZP_06193697.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13] gi|1706309|sp|P52680|DBHA_SERMA RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|802006|gb|AAA65987.1| HU alpha [Serratia marcescens] gi|270040631|gb|EFA13736.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13] gi|1586262|prf||2203354A heterodimeric HU protein Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|220934118|ref|YP_002513017.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995428|gb|ACL72030.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. HL-EbGR7] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + R V + + I + G+ + I F TF V+++ +R G Sbjct: 1 MNKSELIDAIAASSDLPKAQAARAVDAMIDVISGALKNGDQVTIVGFGTFLVREREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I ++ FKA LK + Sbjct: 61 RNPRTGETIQIAASKMPSFKAGKGLKDAV 89 >gi|146307081|ref|YP_001187546.1| nucleoid protein HU beta subunit [Pseudomonas mendocina ymp] gi|330503120|ref|YP_004379989.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01] gi|145575282|gb|ABP84814.1| bacterial nucleoid protein HU beta subunit [Pseudomonas mendocina ymp] gi|328917406|gb|AEB58237.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++ FKA LK + Sbjct: 61 RNPQTGKPISIAAAKIPGFKAGKALKDAV 89 >gi|215778378|ref|YP_002261518.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] gi|208011423|emb|CAQ81887.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV I+ LS++++T + I ++ GE + + F TF V + +R G Sbjct: 1 MNKKDLVSHIADIADLSQQEATAALNATVESITNALKNGEEVTLIGFGTFKVNPRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++I + FKA LK+ + Sbjct: 61 RNPKTGDTIQIAASNMPAFKAGKALKEAV 89 >gi|291059654|gb|ADD72389.1| DNA-binding protein HU [Treponema pallidum subsp. pallidum str. Chicago] Length = 154 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 TRS +V ++ E LSR+ R V + + + + RGE +++ F F + + + VG+ Sbjct: 56 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 115 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +++T + V I VVVF+ S KR+ +RG + Sbjct: 116 SIKTGEVVSIPSHCVVVFRPS----KRLKSAVRGYR 147 >gi|238022457|ref|ZP_04602883.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC 51147] gi|237867071|gb|EEP68113.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC 51147] Length = 102 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 7/96 (7%) Query: 5 ITRSDLVKSISKEF-------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ +++ F L KD V L + + S +G+ I+I F +F + Sbjct: 1 MTKSELMARLAELFIENNEGTELQAKDIEYGVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + RVGRN +T + V++ +RV FK L++R+ Sbjct: 61 YRPPRVGRNPKTGERVEVPAKRVPHFKPGKELRERV 96 >gi|269125485|ref|YP_003298855.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] gi|268310443|gb|ACY96817.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] Length = 159 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L+++++ G + R V +F I D GE + ++ F TF + +R Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V++ P F+A K R+ Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >gi|51246021|ref|YP_065905.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54] gi|50877058|emb|CAG36898.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++SI+ +S+ + + + I ++ +G+ + + F TF V ++ +R G Sbjct: 1 MNKKELIESIADAADISKGAAEKALNGTLAAIAETLKKGDKVTLVGFGTFSVSKREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+ +KI + + FKA S L + I Sbjct: 61 RNPRTNEVIKIPAKNIAKFKAGSKLSEAI 89 >gi|323144308|ref|ZP_08078923.1| integration host factor subunit beta [Succinatimonas hippei YIT 12066] gi|322415899|gb|EFY06618.1| integration host factor subunit beta [Succinatimonas hippei YIT 12066] Length = 92 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%) Query: 5 ITRSDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TR+DL+ S+ ++ S+ D + V +F ++ ++ +GE I+I F +F V+ + Sbjct: 1 MTRADLINSLIARYRDIPPSQIDKS--VREIFEQMIETLSQGERIEIRGFGSFEVRLREP 58 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+ N +T + V + R+VV FK L+ R+ Sbjct: 59 RIAHNPKTGERVDLPARKVVHFKPGVELRNRV 90 >gi|294787730|ref|ZP_06752974.1| integration host factor, beta subunit [Simonsiella muelleri ATCC 29453] gi|294484023|gb|EFG31706.1| integration host factor, beta subunit [Simonsiella muelleri ATCC 29453] Length = 101 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 7/96 (7%) Query: 5 ITRSDLVKSISKEF-------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ +++ F L KD V L + + S +G+ I+I F +F + Sbjct: 1 MTKSELMTRLAEVFVEKNSDTELQTKDIEYSVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +RVGRN +T + V++ +RV FK L++R+ Sbjct: 61 DRPARVGRNPKTGERVEVPAKRVPHFKPGKELRERV 96 >gi|146309880|ref|YP_001174954.1| transcriptional regulator HU subunit alpha [Enterobacter sp. 638] gi|261340912|ref|ZP_05968770.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|296100631|ref|YP_003610777.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|145316756|gb|ABP58903.1| bacterial nucleoid protein HU alpha subunit [Enterobacter sp. 638] gi|288316967|gb|EFC55905.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|295055090|gb|ADF59828.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095112|emb|CBK84202.1| bacterial nucleoid protein HU alpha subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|167645770|ref|YP_001683433.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167348200|gb|ABZ70935.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 8 SDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 SDLV +++ + L++ + + +F + ++AV+GE + I F F V+ K +R GRN Sbjct: 4 SDLVDAAVAADDKLTKTQAKALIDGVFKSLTEAAVKGEEVSIPGFGKFKVQAKPARTGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + V F + LK + Sbjct: 64 PSTGAAIEIAASKKVAFTPAKQLKDAV 90 >gi|52425530|ref|YP_088667.1| HimA protein [Mannheimia succiniciproducens MBEL55E] gi|81691358|sp|Q65SH8|IHFB_MANSM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|52307582|gb|AAU38082.1| HimA protein [Mannheimia succiniciproducens MBEL55E] Length = 94 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S + K +S K V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90 >gi|294676551|ref|YP_003577166.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003] gi|294475371|gb|ADE84759.1| DNA-binding protein HU-2 [Rhodobacter capsulatus SB 1003] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT ++SDLV +++ + G ++ + + I G + + F +F +QK Sbjct: 1 MGKTFSKSDLVDAVAAQTGFAKTNVKDMLDATLGVITAQTEAGSKVTLMGFGSFEQRQKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R+GRN T ++V+I + FK + Sbjct: 61 ARMGRNPATGEQVEIPASAHLAFKPA 86 >gi|237711513|ref|ZP_04541994.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA] gi|237726030|ref|ZP_04556511.1| DNA-binding protein HU-beta [Bacteroides sp. D4] gi|265752938|ref|ZP_06088507.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA] gi|229435838|gb|EEO45915.1| DNA-binding protein HU-beta [Bacteroides dorei 5_1_36/D4] gi|229454208|gb|EEO59929.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA] gi|263236124|gb|EEZ21619.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ E GLS+ D+ + V + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + I ++V FK + L I Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAI 89 >gi|162448780|ref|YP_001611147.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce 56'] gi|161159362|emb|CAN90667.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce 56'] Length = 114 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +I+ L++ + V +F+ + + R E I+I F +F V+ G Sbjct: 1 MTKSELIDAIAGRGELTKARAELVVNCVFDAMTQALQRNEGIEIRGFGSFTVRPYKPYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q V + +R+ FK LK+ + Sbjct: 61 RNPRTGQPVPVPAKRLPFFKVGKELKELV 89 >gi|110598177|ref|ZP_01386454.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340191|gb|EAT58689.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++L++ I+ + L++ D+ R +T + S G + ++ F TF + +R G Sbjct: 1 MSKAELIEKIAAQAKLTKADADRALTAFIGIVKASLKNGNDVPLAGFGTFATVDRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV F+ LK + Sbjct: 61 RNPQTGKTITIAAKKVVKFRPGKSLKDEV 89 >gi|75676083|ref|YP_318504.1| histone-like DNA-binding protein [Nitrobacter winogradskyi Nb-255] gi|74420953|gb|ABA05152.1| Histone-like DNA-binding protein [Nitrobacter winogradskyi Nb-255] Length = 99 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L +++++ LS+K + ++ + I +G+ I+I V+++ +R Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +E++I + V F+A+ LK+ I Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99 >gi|86356056|ref|YP_467948.1| integration host factor subunit beta [Rhizobium etli CFN 42] gi|116250186|ref|YP_766024.1| integration host factor subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|190890071|ref|YP_001976613.1| integration host factor beta-subunit protein [Rhizobium etli CIAT 652] gi|209547655|ref|YP_002279572.1| integration host factor subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241202813|ref|YP_002973909.1| integration host factor subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|123384964|sp|Q1MM94|IHFB_RHIL3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123765870|sp|Q2KD65|IHFB_RHIEC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709801|sp|B3PZE1|IHFB_RHIE6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709802|sp|B5ZN05|IHFB_RHILW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|86280158|gb|ABC89221.1| integration host factor beta-subunit protein [Rhizobium etli CFN 42] gi|115254834|emb|CAK05908.1| putative integration host factor beta subunit [Rhizobium leguminosarum bv. viciae 3841] gi|190695350|gb|ACE89435.1| integration host factor beta-subunit protein [Rhizobium etli CIAT 652] gi|209533411|gb|ACI53346.1| integration host factor, beta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240856703|gb|ACS54370.1| integration host factor, beta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 99 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK L++R+ Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERL 90 >gi|294634213|ref|ZP_06712759.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] gi|291092358|gb|EFE24919.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|268601568|ref|ZP_06135735.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID18] gi|291043583|ref|ZP_06569299.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2] gi|268585699|gb|EEZ50375.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID18] gi|291012046|gb|EFE04035.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2] Length = 98 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|197302366|ref|ZP_03167423.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC 29176] gi|197298545|gb|EDY33088.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC 29176] Length = 90 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ +S+KDS + + + + + G+ +++ F TF V ++ +R G Sbjct: 1 MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVAEQLKAGDKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + FKA LK I Sbjct: 61 RNPQTGETMTIAACKAPKFKAGKALKDAI 89 >gi|58979423|gb|AAW83376.1| DNA-binding protein HU [Campylobacter lari] gi|58979425|gb|AAW83377.1| DNA-binding protein HU [Campylobacter lari] gi|58979427|gb|AAW83378.1| DNA-binding protein HU [Campylobacter lari] gi|58979431|gb|AAW83380.1| DNA-binding protein HU [Campylobacter lari] gi|58979433|gb|AAW83381.1| DNA-binding protein HU [Campylobacter lari] gi|58979469|gb|AAW83399.1| DNA-binding protein HU [Campylobacter lari] gi|58979471|gb|AAW83400.1| DNA-binding protein HU [Campylobacter lari] Length = 100 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 42/80 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + I D +G++I F TF V ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T +K+ +V FK Sbjct: 61 RVPSTGATIKVPATKVAKFK 80 >gi|146328836|ref|YP_001209044.1| integration host factor, beta subunit [Dichelobacter nodosus VCS1703A] gi|166918544|sp|A5EWQ2|IHFB_DICNV RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|146232306|gb|ABQ13284.1| integration host factor, beta subunit [Dichelobacter nodosus VCS1703A] Length = 96 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ L +D V + IC + +G+ ++I F +F + + SR Sbjct: 1 MTKSELIERLVMKYPQLRAQDVEDTVKLMIERICHTLEKGDRVEIRGFGSFSLHYRESRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V++ + + F+A L++R+ +++ Sbjct: 61 GRNPKTGESVRVPAKSIPYFRAGKELRERVDEEI 94 >gi|15602665|ref|NP_245737.1| HimD [Pasteurella multocida subsp. multocida str. Pm70] gi|14194850|sp|Q9CML8|IHFB_PASMU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|12721104|gb|AAK02884.1| HimD [Pasteurella multocida subsp. multocida str. Pm70] Length = 94 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + K ++ KD V + +++ + G+ I++ F +F + + R+ Sbjct: 1 MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90 >gi|319898205|ref|YP_004158298.1| integration host factor beta chain [Bartonella clarridgeiae 73] gi|319402169|emb|CBI75695.1| integration host factor beta chain [Bartonella clarridgeiae 73] Length = 92 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D+ V +F EI + G+ +++ F F +K + +R Sbjct: 1 MVKSELVQIIARHNPHLMQRDAENVVNAIFEEISAALANGQRVELRGFGAFSIKTRLARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRL 90 >gi|312889709|ref|ZP_07749257.1| histone family protein DNA-binding protein [Mucilaginibacter paludis DSM 18603] gi|311297829|gb|EFQ74950.1| histone family protein DNA-binding protein [Mucilaginibacter paludis DSM 18603] Length = 101 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I+ + G ++ + + F + S GE + + F TF VK++ +++G Sbjct: 1 MTKADVIAGITAKTGKGKEATETIIDAFFEVVQSSLTNGEDVFVRGFGTFLVKKRAAKIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N V+I + F+ K ++ +R Sbjct: 61 RNITKNTAVQIPESYIPAFRPGDEFKNKVKAAVR 94 >gi|260654666|ref|ZP_05860156.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1] gi|260630682|gb|EEX48876.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1] Length = 131 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ + + L R D+ V + I + +G +++ F TF V+Q+ +R G Sbjct: 21 VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + V I ++V VFKA +L+ + Sbjct: 81 RNPQDPTKTVHIPAKKVPVFKAGKLLRSAV 110 >gi|262408098|ref|ZP_06084646.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22] gi|294809492|ref|ZP_06768195.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|298484174|ref|ZP_07002340.1| HimA protein [Bacteroides sp. D22] gi|262354906|gb|EEZ03998.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22] gi|294443310|gb|EFG12074.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|295084185|emb|CBK65708.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens XB1A] gi|298269678|gb|EFI11273.1| HimA protein [Bacteroides sp. D22] Length = 92 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD++ + +L + + G I + F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90 >gi|15677168|ref|NP_274321.1| integration host factor beta-subunit [Neisseria meningitidis MC58] gi|121635014|ref|YP_975259.1| integration host factor beta-subunit [Neisseria meningitidis FAM18] gi|218768324|ref|YP_002342836.1| integration host factor subunit beta [Neisseria meningitidis Z2491] gi|254805103|ref|YP_003083324.1| integration host factor beta-subunit [Neisseria meningitidis alpha14] gi|261400687|ref|ZP_05986812.1| integration host factor, beta subunit [Neisseria lactamica ATCC 23970] gi|268594993|ref|ZP_06129160.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02] gi|268596627|ref|ZP_06130794.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19] gi|268603907|ref|ZP_06138074.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1] gi|268682370|ref|ZP_06149232.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID332] gi|268684528|ref|ZP_06151390.1| integration host factor beta-subunit [Neisseria gonorrhoeae SK-92-679] gi|293398895|ref|ZP_06643060.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62] gi|304387392|ref|ZP_07369584.1| integration host factor beta subunit [Neisseria meningitidis ATCC 13091] gi|313668441|ref|YP_004048725.1| integration host factor beta-subunit [Neisseria lactamica ST-640] gi|60392449|sp|P0A0U1|IHFB_NEIMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|60392450|sp|P0A0U2|IHFB_NEIMB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|60392451|sp|P0A0U3|IHFB_NEIGO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918555|sp|A1KUD0|IHFB_NEIMF RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|7226542|gb|AAF41677.1| integration host factor, beta subunit [Neisseria meningitidis MC58] gi|9965584|gb|AAG10095.1| IfhA [Neisseria gonorrhoeae] gi|120866720|emb|CAM10473.1| integration host factor beta-subunit [Neisseria meningitidis FAM18] gi|121052332|emb|CAM08663.1| integration host factor beta-subunit [Neisseria meningitidis Z2491] gi|254668645|emb|CBA06291.1| integration host factor beta-subunit [Neisseria meningitidis alpha14] gi|254670493|emb|CBA06219.1| integration host factor beta-subunit [Neisseria meningitidis alpha153] gi|254673141|emb|CBA07940.1| integration host factor beta-subunit [Neisseria meningitidis alpha275] gi|261392417|emb|CAX49959.1| integration host factor beta-subunit (IHF-beta) [Neisseria meningitidis 8013] gi|268548382|gb|EEZ43800.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02] gi|268550415|gb|EEZ45434.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19] gi|268588038|gb|EEZ52714.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1] gi|268622654|gb|EEZ55054.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID332] gi|268624812|gb|EEZ57212.1| integration host factor beta-subunit [Neisseria gonorrhoeae SK-92-679] gi|269209603|gb|EEZ76058.1| integration host factor, beta subunit [Neisseria lactamica ATCC 23970] gi|291610309|gb|EFF39419.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62] gi|304338643|gb|EFM04761.1| integration host factor beta subunit [Neisseria meningitidis ATCC 13091] gi|308389422|gb|ADO31742.1| integration host factor beta-subunit [Neisseria meningitidis alpha710] gi|309379233|emb|CBX22190.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005903|emb|CBN87359.1| integration host factor beta-subunit [Neisseria lactamica 020-06] gi|319410569|emb|CBY90938.1| integration host factor beta-subunit (IHF-beta) [Neisseria meningitidis WUE 2594] gi|325128401|gb|EGC51284.1| integration host factor, beta subunit [Neisseria meningitidis N1568] gi|325130334|gb|EGC53100.1| integration host factor, beta subunit [Neisseria meningitidis OX99.30304] gi|325132497|gb|EGC55190.1| integration host factor, beta subunit [Neisseria meningitidis M6190] gi|325134456|gb|EGC57101.1| integration host factor, beta subunit [Neisseria meningitidis M13399] gi|325136194|gb|EGC58802.1| integration host factor, beta subunit [Neisseria meningitidis M0579] gi|325138271|gb|EGC60840.1| integration host factor, beta subunit [Neisseria meningitidis ES14902] gi|325140473|gb|EGC62994.1| integration host factor, beta subunit [Neisseria meningitidis CU385] gi|325142525|gb|EGC64926.1| integration host factor, beta subunit [Neisseria meningitidis 961-5945] gi|325144557|gb|EGC66856.1| integration host factor, beta subunit [Neisseria meningitidis M01-240013] gi|325198454|gb|ADY93910.1| integration host factor, beta subunit [Neisseria meningitidis G2136] gi|325200072|gb|ADY95527.1| integration host factor, beta subunit [Neisseria meningitidis H44/76] gi|325201987|gb|ADY97441.1| integration host factor, beta subunit [Neisseria meningitidis M01-240149] gi|325204303|gb|ADY99756.1| integration host factor, beta subunit [Neisseria meningitidis M01-240355] gi|325205924|gb|ADZ01377.1| integration host factor, beta subunit [Neisseria meningitidis M04-240196] gi|325208262|gb|ADZ03714.1| integration host factor, beta subunit [Neisseria meningitidis NZ-05/33] Length = 104 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|333029611|ref|ZP_08457672.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] gi|332740208|gb|EGJ70690.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] Length = 90 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 48/81 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GLS+ DS + + + + D+ G+ + + F TF V ++ +R G Sbjct: 1 MNKAELISAMAEKSGLSKVDSKKALDAFMSVVSDTLKSGDKVSLIGFGTFSVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKA 85 N T + ++I ++V FKA Sbjct: 61 INPATQKPIEIPAKKVAKFKA 81 >gi|239908260|ref|YP_002955001.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239798126|dbj|BAH77115.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 92 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K++ +++ L + + FV F+ I + + ++I F +F VK+ G Sbjct: 1 MNKGELIKAVGEKYNLDYEFAVDFVNLFFDSIRQALNNEDRVEIRGFGSFAVKKYNGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V+I P+++ FK K+ + Sbjct: 61 RNPKTGVTVEIKPKKLPFFKPGKDFKEYL 89 >gi|254443383|ref|ZP_05056859.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] gi|198257691|gb|EDY81999.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] Length = 104 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 7/104 (6%) Query: 1 MSKTITRSDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 MS +T+ D+V I +K+ S+ T V + I D+ G +++ +F F V+ Sbjct: 1 MSNNLTKRDIVLRIFEKTKDIPQSKIQDT--VQMTLDIILDALAEGRNVELRNFGVFEVQ 58 Query: 58 QKGSRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD-DMRG 99 ++ +RVGRN + +V I R VV FKA +LK +I D D+ G Sbjct: 59 KRKARVGRNPNRPETDVVIPTRAVVKFKAGKVLKAKIKDIDLEG 102 >gi|89095458|ref|ZP_01168369.1| DNA-binding protein HU [Oceanospirillum sp. MED92] gi|89080288|gb|EAR59549.1| DNA-binding protein HU [Oceanospirillum sp. MED92] Length = 91 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDATLEAVTGALQNGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FK LK + Sbjct: 61 RNPQTGKPIEIAAATLPTFKPGKALKDAV 89 >gi|119776290|ref|YP_929030.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B] gi|119768790|gb|ABM01361.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B] Length = 90 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + R++L+ I++ L++ ++ R + + F E +A++ G+ I I F +F + R Sbjct: 1 MNRTELIAKIAESADLTKAEAGRALKS-FEEAVTAAMKDGDKISIVGFGSFETSTRAERT 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT +E+KI + FKA L+ Sbjct: 60 GRNPQTGKEIKIPAATIPKFKAGKALR 86 >gi|319952649|ref|YP_004163916.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] gi|319421309|gb|ADV48418.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] Length = 96 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V + E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVTRISEKLGIEKGDVQATVESFMEEVKYSLENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPSFKPAKVF 85 >gi|317484392|ref|ZP_07943308.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316924344|gb|EFV45514.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQK 59 MSKT+T++D+ KSI + + ++ + + + + I A++ E + +S F F K Sbjct: 1 MSKTVTKADIAKSICAQSEMKQQHAKKVLDAMLG-IMKKALKEEKEMLLSGFGKFEAFTK 59 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN QT +E+ +D V+ F+ S Sbjct: 60 KNRKGRNPQTGEEITLDSHDVLAFRIS 86 >gi|260593420|ref|ZP_05858878.1| DNA-binding protein HU-beta [Prevotella veroralis F0319] gi|260534696|gb|EEX17313.1| DNA-binding protein HU-beta [Prevotella veroralis F0319] Length = 91 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ LS+ D+ + + I D+ V G+ +++ F TF ++ + G Sbjct: 1 MNKTELIEKIAASANLSKADAKKALDATTEAIKDALVAGDKVQLVGFGTFSTNERPAHEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T Q+++I ++V FKA + L Sbjct: 61 MNPATKQKIQIPAKKVAKFKAGAEL 85 >gi|170748862|ref|YP_001755122.1| integration host factor, beta subunit [Methylobacterium radiotolerans JCM 2831] gi|170655384|gb|ACB24439.1| integration host factor, beta subunit [Methylobacterium radiotolerans JCM 2831] Length = 103 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ RG+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + + VFK +++R+ Sbjct: 61 GRNPRTGAAVAVSEKAIPVFKTGKEMRQRL 90 >gi|56751859|ref|YP_172560.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301] gi|81301057|ref|YP_401265.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942] gi|56686818|dbj|BAD80040.1| DNA binding protein HU [Synechococcus elongatus PCC 6301] gi|81169938|gb|ABB58278.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942] Length = 91 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++ GL++ + L + I D+ V GE + I F F +++ R G Sbjct: 1 MNKGELIDQVAVRTGLTKVQVAAAIDALVDVIVDTVVEGEKVSILGFGAFEARERSERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T ++ I ++V F A + K R+ Sbjct: 61 LNPKTGDKILIPAKKVPAFTAGKLFKDRV 89 >gi|57504971|ref|ZP_00370923.1| DNA-binding protein HU [Campylobacter coli RM2228] gi|305432029|ref|ZP_07401196.1| DNA-binding protein HU [Campylobacter coli JV20] gi|57019243|gb|EAL55949.1| DNA-binding protein HU [Campylobacter coli RM2228] gi|58979339|gb|AAW83334.1| DNA-binding protein HU [Campylobacter coli] gi|58979349|gb|AAW83339.1| DNA-binding protein HU [Campylobacter coli] gi|58979351|gb|AAW83340.1| DNA-binding protein HU [Campylobacter coli] gi|58979353|gb|AAW83341.1| DNA-binding protein HU [Campylobacter coli] gi|58979355|gb|AAW83342.1| DNA-binding protein HU [Campylobacter coli] gi|58979357|gb|AAW83343.1| DNA-binding protein HU [Campylobacter coli] gi|58979363|gb|AAW83346.1| DNA-binding protein HU [Campylobacter coli] gi|58979377|gb|AAW83353.1| DNA-binding protein HU [Campylobacter coli] gi|58979393|gb|AAW83361.1| DNA-binding protein HU [Campylobacter coli] gi|58979395|gb|AAW83362.1| DNA-binding protein HU [Campylobacter coli] gi|58979409|gb|AAW83369.1| DNA-binding protein HU [Campylobacter coli] gi|58979413|gb|AAW83371.1| DNA-binding protein HU [Campylobacter coli] gi|58979463|gb|AAW83396.1| DNA-binding protein HU [Campylobacter coli] gi|58979465|gb|AAW83397.1| DNA-binding protein HU [Campylobacter coli] gi|58979467|gb|AAW83398.1| DNA-binding protein HU [Campylobacter coli] gi|58979571|gb|AAW83450.1| DNA-binding protein HU [Campylobacter coli] gi|58979573|gb|AAW83451.1| DNA-binding protein HU [Campylobacter coli] gi|304445113|gb|EFM37759.1| DNA-binding protein HU [Campylobacter coli JV20] Length = 96 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 43/80 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|329964256|ref|ZP_08301357.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057] gi|328525561|gb|EGF52604.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057] Length = 88 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + + + G+ + + F TF V ++ +R+G Sbjct: 1 MNKAELISAMAAEAGLSKVDSKKALDAFIVSVTKAMKAGDKVSLVGFGTFSVAERSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++VV FK + L Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85 >gi|239905786|ref|YP_002952525.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239795650|dbj|BAH74639.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 91 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++D++ I G++ K ++ + + + I +S V GEA+ ++ F TF V ++ +R Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQESLVGGEALTLTGFGTFKVSERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GR+ +T + I + V F LK + Sbjct: 61 GRDPRTGNPIDIPASKAVRFTPGKTLKDAV 90 >gi|315918607|ref|ZP_07914847.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692482|gb|EFS29317.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 92 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD++ + +L + + G + I F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90 >gi|269137541|ref|YP_003294241.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda EIB202] gi|267983201|gb|ACY83030.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda EIB202] gi|304557615|gb|ADM40279.1| DNA-binding protein HU-alpha [Edwardsiella tarda FL6-60] Length = 90 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+KI V F + LK + Sbjct: 61 RNPQTGNEIKIAAANVPAFVSGKALKDAV 89 >gi|225075202|ref|ZP_03718401.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens NRL30031/H210] gi|241758896|ref|ZP_04757009.1| integration host factor, beta subunit [Neisseria flavescens SK114] gi|261380193|ref|ZP_05984766.1| integration host factor, beta subunit [Neisseria subflava NJ9703] gi|319638404|ref|ZP_07993166.1| integration host factor subunit beta [Neisseria mucosa C102] gi|224953377|gb|EEG34586.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens NRL30031/H210] gi|241321104|gb|EER57317.1| integration host factor, beta subunit [Neisseria flavescens SK114] gi|284797040|gb|EFC52387.1| integration host factor, beta subunit [Neisseria subflava NJ9703] gi|317400153|gb|EFV80812.1| integration host factor subunit beta [Neisseria mucosa C102] Length = 104 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|85709918|ref|ZP_01040983.1| integration host factor beta-subunit [Erythrobacter sp. NAP1] gi|85688628|gb|EAQ28632.1| integration host factor beta-subunit [Erythrobacter sp. NAP1] Length = 93 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ + K+ L ++ + V F+EI G +++ F F + + +R Sbjct: 1 MIRSELLTELHKDNPELRSEEVEQVVDIFFDEISQRLAEGGRVELRGFGAFSTRDREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ +RV FKA ++ R+ +D Sbjct: 61 GRNPRTGEAVEVPAKRVPYFKAGKEIRNRLNED 93 >gi|255067152|ref|ZP_05319007.1| integration host factor, beta subunit [Neisseria sicca ATCC 29256] gi|261365784|ref|ZP_05978667.1| integration host factor, beta subunit [Neisseria mucosa ATCC 25996] gi|255048520|gb|EET43984.1| integration host factor, beta subunit [Neisseria sicca ATCC 29256] gi|288565692|gb|EFC87252.1| integration host factor, beta subunit [Neisseria mucosa ATCC 25996] Length = 104 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|114569526|ref|YP_756206.1| histone family protein DNA-binding protein [Maricaulis maris MCS10] gi|114339988|gb|ABI65268.1| histone family protein DNA-binding protein [Maricaulis maris MCS10] Length = 88 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL K+++++ GLSR + V + I S ++++I+ F TF+ K + +R Sbjct: 1 MNKSDLAKAVAEKTGLSRAQAGEAVDSAIEAIVGSVKGNDSVQIAGFGTFYAKHREAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + R F+ ++ LK Sbjct: 61 RNPRTGETMMSKARTQAAFRPAAALK 86 >gi|124267145|ref|YP_001021149.1| nucleoid protein Hbs [Methylibium petroleiphilum PM1] gi|124259920|gb|ABM94914.1| bacterial nucleoid protein Hbs [Methylibium petroleiphilum PM1] Length = 90 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K+ +S+ +TR + L + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKQADISKAAATRALEALIGGVRTTLKKGGSVSLVGFGTFAVTKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALK 86 >gi|254453509|ref|ZP_05066946.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|254455028|ref|ZP_05068464.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|198263730|gb|EDY88001.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|198267915|gb|EDY92185.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] Length = 95 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L I+ E L + + V T+F I + RG ++I F F +Q+ R+ Sbjct: 2 MIRSELYAKIAAENRHLMHEQAVAVVDTIFETITAALERGNRVEIRGFGAFSCRQREGRI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + V + P+ + FK +++ R+ Sbjct: 62 GRNPKNGASVDVAPKVIPWFKLGKVIRDRL 91 >gi|323436199|ref|ZP_01051348.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134] gi|321496514|gb|EAQ37896.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134] Length = 90 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 49/85 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ G+++ + + + + ++ + +G + + F ++ V ++ +R G Sbjct: 1 MNKSELIDGMAEHAGITKAAAKKALESFLGDVEGTLKKGGRVSLVGFGSWSVSKRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI + VV FKA S L Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSEL 85 >gi|167754218|ref|ZP_02426345.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM 17216] gi|237711927|ref|ZP_04542408.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|317474934|ref|ZP_07934203.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|167658843|gb|EDS02973.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM 17216] gi|229454622|gb|EEO60343.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|316908837|gb|EFV30522.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 93 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I+ + GL ++ + V + + S + GE + + F +F +K + + Sbjct: 1 MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N V + + FK S R+ D Sbjct: 61 RNISRNTTVIVPAHNIPAFKPSKAFAGRMKSD 92 >gi|298368833|ref|ZP_06980151.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] gi|298282836|gb|EFI24323.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] Length = 89 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKAAAAKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I + F+A LK Sbjct: 61 RNPKTGAPLTIAAAKTPKFRAGKALK 86 >gi|15606646|ref|NP_214026.1| DNA binding protein HU [Aquifex aeolicus VF5] gi|14194592|sp|O67461|DBH_AQUAE RecName: Full=DNA-binding protein HU gi|2983862|gb|AAC07415.1| DNA binding protein HU [Aquifex aeolicus VF5] Length = 94 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 + +K+ V+ +F I + ++GE +KIS F TF VK + + G N++ + V++ R+ Sbjct: 22 IQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKTRKPKKGMNIKKREIVEVPERK 81 Query: 80 VVVFKAS 86 +V+FK S Sbjct: 82 IVLFKPS 88 >gi|319954832|ref|YP_004166099.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] gi|319423492|gb|ADV50601.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] Length = 90 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVSKREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI + VV FKA + L K + Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELAKAV 89 >gi|238765544|ref|ZP_04626458.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638] gi|238696239|gb|EEP89042.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|126701120|ref|YP_001090017.1| DNA-binding protein HU [Clostridium difficile 630] gi|254977121|ref|ZP_05273593.1| DNA-binding protein HU [Clostridium difficile QCD-66c26] gi|255094450|ref|ZP_05323928.1| DNA-binding protein HU [Clostridium difficile CIP 107932] gi|255102706|ref|ZP_05331683.1| DNA-binding protein HU [Clostridium difficile QCD-63q42] gi|255308527|ref|ZP_05352698.1| DNA-binding protein HU [Clostridium difficile ATCC 43255] gi|255316201|ref|ZP_05357784.1| DNA-binding protein HU [Clostridium difficile QCD-76w55] gi|255518863|ref|ZP_05386539.1| DNA-binding protein HU [Clostridium difficile QCD-97b34] gi|255652042|ref|ZP_05398944.1| DNA-binding protein HU [Clostridium difficile QCD-37x79] gi|255657453|ref|ZP_05402862.1| DNA-binding protein HU [Clostridium difficile QCD-23m63] gi|260685016|ref|YP_003216301.1| DNA-binding protein HU [Clostridium difficile CD196] gi|260688674|ref|YP_003219808.1| DNA-binding protein HU [Clostridium difficile R20291] gi|296449048|ref|ZP_06890838.1| DNA-binding protein HU [Clostridium difficile NAP08] gi|296879871|ref|ZP_06903844.1| DNA-binding protein HU [Clostridium difficile NAP07] gi|115252557|emb|CAJ70400.1| Non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Clostridium difficile] gi|260211179|emb|CBA66647.1| DNA-binding protein HU [Clostridium difficile CD196] gi|260214691|emb|CBE07338.1| DNA-binding protein HU [Clostridium difficile R20291] gi|296262141|gb|EFH08946.1| DNA-binding protein HU [Clostridium difficile NAP08] gi|296429160|gb|EFH15034.1| DNA-binding protein HU [Clostridium difficile NAP07] Length = 92 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ GL++K++ + + + D+ V E +++ F TF +++ +R G Sbjct: 1 MNKAELVSKMAEKSGLTKKEAEAALNAFMSSVQDALVNNEKVQLVGFGTFETRERAARQG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILK 90 RN + ++V I + VFKA LK Sbjct: 61 RNPRDPEQVIDIPASKAPVFKAGKGLK 87 >gi|82703188|ref|YP_412754.1| integration host factor, beta subunit [Nitrosospira multiformis ATCC 25196] gi|123740640|sp|Q2Y7A9|IHFB_NITMU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|82411253|gb|ABB75362.1| integration host factor, beta subunit [Nitrosospira multiformis ATCC 25196] Length = 94 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ + L KD+ V + + + S +G+ I+I F +F + + RV Sbjct: 1 MTKSELIARLAARHPQLGTKDAELAVKVILDAMAKSLSQGQRIEIRGFGSFDLNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V++ + V FKA +++R+ Sbjct: 61 GRNPKSGEKVRVPEKYVPHFKAGKEMRERV 90 >gi|121997401|ref|YP_001002188.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] gi|121588806|gb|ABM61386.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] Length = 90 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ LS+ + R V + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIEAVADSADLSKAAAARAVDAMVESVTDALREGDQVTLVGFGTFTVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I +V FK LK I Sbjct: 61 RNPRTGESIDIPASKVPGFKPGKALKDAI 89 >gi|294673496|ref|YP_003574112.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294473143|gb|ADE82532.1| DNA-binding protein, HU family [Prevotella ruminicola 23] Length = 95 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + D + +++ G S ++ +FV + + D +++ I +F TF VK+K R+ Sbjct: 1 MNNKDFITELAQRTGYSADETQQFVNCVVEAMGDHFQDDDSVLIPTFGTFEVKKKMERIM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T Q + + P+ V+ FK + K+R+ Sbjct: 61 VNPSTGQRMLVPPKLVLTFKPNVSWKERV 89 >gi|238756047|ref|ZP_04617370.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473] gi|238705714|gb|EEP98108.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473] Length = 90 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ + LS+ + + + I +S GE +++ F TF V + R G Sbjct: 1 MNKTQLIEVIADKADLSKTQAKAALESTLAAITESLKDGEQVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI V F + LK Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 >gi|302668930|ref|YP_003832755.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302397270|gb|ADL36173.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 92 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++K GLS+KD+ + + L + + +++ F TF ++ +R G Sbjct: 1 MNKTELIDAMAKATGLSKKDAGKALDALTGTVSKELKKKGKVQLVGFGTFETVKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT +KI FKA LK Sbjct: 61 KNPQTGAAIKIPASIAPKFKAGKALK 86 >gi|58979335|gb|AAW83332.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 43/80 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLTKGDSVSFIGFGTFSTAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|304569686|ref|YP_009985.2| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] Length = 101 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++T+++LV+ I + GL+ K + + + D+ GE++ + F +F V + +R Sbjct: 10 SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I +VV F +LK + Sbjct: 70 KGRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 100 >gi|30250139|ref|NP_842209.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] gi|30139246|emb|CAD86119.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] Length = 90 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ I++ L++ + + + I D+ + +++ + F TF V ++ +R G Sbjct: 1 MNKSDLIDVIAQSADLTKAQAGNALDGALSAIKDALGKNDSVTLVGFGTFKVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+KI +V F A LK + Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89 >gi|300726153|ref|ZP_07059610.1| DNA-binding protein HU [Prevotella bryantii B14] gi|299776623|gb|EFI73176.1| DNA-binding protein HU [Prevotella bryantii B14] Length = 94 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI-KISSFATFHVKQKGSRV 63 + +++L+ ++++ L++ +S++ V + I D+ G+ + I F F VKQ R Sbjct: 1 MNKTELISKVAEQANLTKAESSKLVNAVLGAIADNLCEGDGLLAIPDFGRFQVKQVPERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 G N T +++ I +VFKAS Sbjct: 61 GINPSTKEKIVIPAHDKIVFKAS 83 >gi|58979365|gb|AAW83347.1| DNA-binding protein HU [Campylobacter coli] gi|58979379|gb|AAW83354.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 43/80 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|58979373|gb|AAW83351.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 43/80 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|319407888|emb|CBI81540.1| integration host factor beta chain [Bartonella schoenbuchensis R1] Length = 92 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++ L ++D V +F EI + + G+ I++ F F VK + +R Sbjct: 1 MIKSELIQIIARYNPHLLQRDVENIVNAVFEEISTALINGDRIELRGFGAFAVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVVVEKKWVPFFKTGKDLRDRL 90 >gi|218887884|ref|YP_002437205.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758838|gb|ACL09737.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL+ K + + + D+ GE++ + F +F V ++ +R Sbjct: 1 MTKAELVEKIRAKAGLASKVQAEGALDATIAVLADALAAGESVTFTGFGSFKVTERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I +VV F +LK Sbjct: 61 GRNPRTGEEITIPSGKVVKFTPGKLLK 87 >gi|148552974|ref|YP_001260556.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148498164|gb|ABQ66418.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 90 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ G+++ D+++ V +F+ I +G+ +++ F TF V ++ + G Sbjct: 1 MNKQELIGTVAEATGMTKNDASKAVEAVFDSITTQLKKGDEVRLVGFGTFSVTKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI FK LK + Sbjct: 61 RNPRTGEPMKISASSQPKFKPGKGLKDAV 89 >gi|218258078|ref|ZP_03474505.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii DSM 18315] gi|218225797|gb|EEC98447.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii DSM 18315] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS L+ +SK+ GL +KD R + + I G+ I + F +F + + SR Sbjct: 1 MNRSQLINILSKKTGLDKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN ++ V++ PR ++ FK + L Sbjct: 61 RNPKSGTAVQLSPRTIIHFKCAPHL 85 >gi|113461118|ref|YP_719186.1| integration host factor subunit beta [Haemophilus somnus 129PT] gi|170717700|ref|YP_001784773.1| integration host factor subunit beta [Haemophilus somnus 2336] gi|123031307|sp|Q0I390|IHFB_HAES1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045038|sp|B0UUH4|IHFB_HAES2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|112823161|gb|ABI25250.1| integration host factor, beta-subunit [Haemophilus somnus 129PT] gi|168825829|gb|ACA31200.1| integration host factor, beta subunit [Haemophilus somnus 2336] Length = 94 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++++ S + KD V + ++ + GE I+I F +F + + SR+ Sbjct: 1 MTKSELIENLASTNPNVPLKDIENAVKDILEQLSQALENGERIEIRGFGSFSLHFRQSRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V + + V FKA LK+R+ Sbjct: 61 GRNPKTGEKVDLSAKYVPHFKAGKELKERV 90 >gi|254491635|ref|ZP_05104814.1| DNA-binding protein HU [Methylophaga thiooxidans DMS010] gi|224463113|gb|EEF79383.1| DNA-binding protein HU [Methylophaga thiooxydans DMS010] Length = 95 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 51/89 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++ + + +L+ +++ +S+ + + V + + + + +G+ + + F TF V+++ + Sbjct: 3 NQAVNKYELIDAVAAAADISKAKAAQAVDGVTSAVTKALSKGDQVTLVGFGTFSVRERAA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T +E+KI ++ FKA LK Sbjct: 63 RTGRNPRTGEEIKIAAAKIPAFKAGKALK 91 >gi|59713004|ref|YP_205780.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio fischeri ES114] gi|197336341|ref|YP_002157189.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] gi|59481105|gb|AAW86892.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio fischeri ES114] gi|197317831|gb|ACH67278.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] Length = 90 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +I+++ LS+ + + + + GE +++ F TF V + +R G Sbjct: 1 MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGEQVQLIGFGTFKVNNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I +V F A LK+ + Sbjct: 61 RNPKTGEEIQIKAAKVPAFVAGKALKESV 89 >gi|194336405|ref|YP_002018199.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308882|gb|ACF43582.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ LV+ I+ + LS+ D+ R + + DS G + ++ F TF + + R G Sbjct: 1 MSKNALVEKIADQAQLSKIDADRALKAFVTIVSDSLKNGVDVPLAGFGTFTIVDRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + I ++VV FK LK I Sbjct: 61 RNPMTGEAITIAAKKVVKFKPGKALKMDI 89 >gi|332969967|gb|EGK08967.1| DNA-binding protein HU-beta [Kingella kingae ATCC 23330] Length = 122 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGS 61 K + +S+L+ +I+ E GL++ D+++ + F E+ + ++ G++I + F TF V + Sbjct: 21 KIMNKSELIDAIATESGLTKTDASKALDA-FTEVVKNTLKTGDSITLVGFGTFKVADRAE 79 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R G N +T + + I RV F LK ++ + K K Sbjct: 80 RQGLNPKTKEAITIPAARVPKFTPGKALKDVLVAEQPAAKKKK 122 >gi|260889058|ref|ZP_05900321.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] gi|260861118|gb|EEX75618.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] Length = 99 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +++ + V + +K G ++K + V + V+GE+I+ + TF VK++ +R Sbjct: 6 AMSKKEFVDAYAKATGETKKRAEELVNAFLGTAEEFLVKGESIQFVGWGTFEVKERAARE 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T + +KID ++VV FK L ++ D Sbjct: 66 GRNPSTGKPIKIDAKKVVKFKVGKKLADKVAD 97 >gi|220922182|ref|YP_002497483.1| integration host factor subunit beta [Methylobacterium nodulans ORS 2060] gi|219946788|gb|ACL57180.1| integration host factor, beta subunit [Methylobacterium nodulans ORS 2060] Length = 106 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ RG+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVENIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + + VFK ++ R+ Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRL 90 >gi|197294415|ref|YP_001798956.1| nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] gi|197294469|ref|YP_001799010.1| nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] gi|171853742|emb|CAM11665.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] gi|171853796|emb|CAM11731.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] Length = 95 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQKGSR 62 +T+ +L+++I+K +S + F F ++ A+ E I S TF ++ + +R Sbjct: 1 MTKKELIRAIAKRQNISIVQTEEFYNA-FEQVLFEAIAANDEVILSPSIGTFALRHRQAR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN QT ++++I + VVF+ S +K+ + D Sbjct: 60 LGRNPQTGEQIEIPEKTAVVFRPSRTIKEEVRD 92 >gi|118579611|ref|YP_900861.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118502321|gb|ABK98803.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379] Length = 92 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ ++++E GL + D+ + ++ + + ++ +G+ + + F TF ++ +R G Sbjct: 1 MTKAELISAVAEESGLKKVDAEKALSAFISTVTEALKQGDKLSLVGFGTFCTSKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N QT +++ I + F+ LK Sbjct: 61 QNPQTGKKINIPAATIPKFRPGKTLK 86 >gi|186477811|ref|YP_001859281.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184194270|gb|ACC72235.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 92 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+A+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKAVAKGDAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|225847908|ref|YP_002728071.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643424|gb|ACN98474.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 37/58 (63%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + ++ +GE + I F F+++++ R GRN +T +E+KI R+VV F A+ LK+ + Sbjct: 32 VVEAISKGERVAIPGFGIFNIRERKERKGRNPRTGKEIKIPARKVVAFTAAKALKEAV 89 >gi|150026047|ref|YP_001296873.1| histone-like DNA-binding protein HU-beta [Flavobacterium psychrophilum JIP02/86] gi|39653976|gb|AAR29587.1| Fp91 [Flavobacterium psychrophilum] gi|149772588|emb|CAL44071.1| Histone-like bacterial DNA-binding protein HU-beta [Flavobacterium psychrophilum JIP02/86] Length = 91 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++S G+++ + + + I ++ +G + + F ++ V + +R G Sbjct: 1 MNKSDLIDAMSASAGITKAAAKLALESFLGNIEETLQKGGRVSLVGFGSWSVSNRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +KI + VV FKA + L+ Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELE 86 >gi|295394908|ref|ZP_06805121.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030] gi|294972241|gb|EFG48103.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030] Length = 94 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 RS+LV ++++ GL++K + + +F+ D +GE + + + + ++ +R GRN Sbjct: 5 RSELVAEVAEKTGLTQKQVSDVLDGVFDSFADVVSKGEKLTVPGWLSVERTERAARKGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I V A S LK Sbjct: 65 PQTGEEIQIAAGYSVKLSAGSKLK 88 >gi|256830730|ref|YP_003159458.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256579906|gb|ACU91042.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 97 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++++V SI ++ +R + V T+ + + ++ + ++ IS F F +K +R Sbjct: 5 TLTKAEIVDSIYEKSERNRAEVKAQVETMLDIMKEAVKKDHSLLISGFGKFEAYEKDARK 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT++ + + R+VVVF+ S L+ + Sbjct: 65 GRNPQTSESIILSERKVVVFRISRKLRAEL 94 >gi|91785774|ref|YP_560980.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400] gi|170694282|ref|ZP_02885436.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|187925902|ref|YP_001897544.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|209515815|ref|ZP_03264678.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|296157574|ref|ZP_06840409.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|307731496|ref|YP_003908720.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|323527878|ref|YP_004230031.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|91689728|gb|ABE32928.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400] gi|170140705|gb|EDT08879.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|187717096|gb|ACD18320.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|209503842|gb|EEA03835.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|295892346|gb|EFG72129.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|307586031|gb|ADN59429.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|323384880|gb|ADX56971.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 92 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I S +G+A+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGDAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|15643036|ref|NP_228079.1| DNA-binding protein, HU [Thermotoga maritima MSB8] gi|6226592|sp|P36206|DBH_THEMA RecName: Full=DNA-binding protein HU gi|4980764|gb|AAD35355.1|AE001709_1 DNA-binding protein, HU [Thermotoga maritima MSB8] Length = 90 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MTKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89 >gi|289423339|ref|ZP_06425147.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L] gi|289156270|gb|EFD04927.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L] Length = 92 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ L++K+S + + + ++ V GE +++ F TF +++ +R G Sbjct: 1 MNKAELVAKIAEKSNLTKKESELALNAFMDVVEETLVAGEKVQLVGFGTFETRERAARSG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRI 93 RN + E ++I + VFKA LK+ + Sbjct: 61 RNPRKPDETIEIPASKAPVFKAGKGLKELV 90 >gi|282896625|ref|ZP_06304640.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii D9] gi|281198495|gb|EFA73381.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii D9] Length = 94 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++S++ +++K + ++ + I ++ G+ + + F +F + + +R G Sbjct: 1 MNKAELVDAVSEKASVTKKQADAVISAAIDTIIEAVASGDKVTLVGFGSFESRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I +V F A + ++++ Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFREKV 89 >gi|114707247|ref|ZP_01440145.1| histone-like protein [Fulvimarina pelagi HTCC2506] gi|114537443|gb|EAU40569.1| histone-like protein [Fulvimarina pelagi HTCC2506] Length = 91 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++S++ LS++ +T V +F I + G I++ F TF V + + G Sbjct: 1 MNKNELVSAVSEKADLSKQQATAAVDAVFGTIEKTLADGGDIRLVGFGTFAVTHRNASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDSV 89 >gi|34498500|ref|NP_902715.1| integration host factor beta-subunit [Chromobacterium violaceum ATCC 12472] gi|81711737|sp|Q7NTK9|IHFB_CHRVO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|34104355|gb|AAQ60714.1| integration host factor beta-subunit [Chromobacterium violaceum ATCC 12472] Length = 104 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+S+L+ +S+ L KD+ V T+ + + ++ +G I+I F +F + + Sbjct: 1 MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN ++ V + + V FKA L++R+ Sbjct: 61 PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERV 94 >gi|15837792|ref|NP_298480.1| histone-like protein [Xylella fastidiosa 9a5c] gi|14194631|sp|Q9PE38|DBH_XYLFA RecName: Full=DNA-binding protein HU gi|9106160|gb|AAF84000.1|AE003953_4 histone-like protein [Xylella fastidiosa 9a5c] Length = 94 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ +G+++ + F TF V+ + R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + + I FK LK + Sbjct: 61 RNPKSGELIMIAASNNPSFKPGKALKDAV 89 >gi|254361238|ref|ZP_04977381.1| integration host factor beta subunit [Mannheimia haemolytica PHL213] gi|261492539|ref|ZP_05989092.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495208|ref|ZP_05991670.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|3334237|sp|P95519|IHFB_PASHA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1842239|gb|AAC44846.1| integration host factor Beta subunit [Mannheimia haemolytica] gi|153092734|gb|EDN73777.1| integration host factor beta subunit [Mannheimia haemolytica PHL213] gi|261309133|gb|EEY10374.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311698|gb|EEY12848.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 93 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S+ SK L K V L ++ + GE I++ F +F + + R+ Sbjct: 1 MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FKA LK+R+ Sbjct: 61 GRNPKTGESVLLGAKYVPHFKAGKDLKERV 90 >gi|329847169|ref|ZP_08262197.1| integration host factor, beta subunit [Asticcacaulis biprosthecum C19] gi|328842232|gb|EGF91801.1| integration host factor, beta subunit [Asticcacaulis biprosthecum C19] Length = 99 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E+ L++KD R V + + + +G +++ F V+ + +R Sbjct: 1 MLKSELIERLASEYPHLTQKDVERAVNLILESMISTLEKGGRVELRGFGALSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK+ L++R+ Sbjct: 61 GRNPRTGEAVNVPAKHVPFFKSGKELRERL 90 >gi|240949275|ref|ZP_04753619.1| integration host factor subunit beta [Actinobacillus minor NM305] gi|240296391|gb|EER47035.1| integration host factor subunit beta [Actinobacillus minor NM305] Length = 93 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 V + +I S GE I+I F +F + + +RVGRN +T + VK++ + V FKA Sbjct: 26 VKEILEKIMFSLENGERIEIRGFGSFSLHHRDARVGRNPKTGESVKLEAKSVPHFKAGKE 85 Query: 89 LKKRI 93 LK+R+ Sbjct: 86 LKERV 90 >gi|218282536|ref|ZP_03488786.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989] gi|218216523|gb|EEC90061.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989] Length = 94 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ D++ +I+++ L++KD T V +I + G+ + ++ F F + ++ +R G Sbjct: 4 LTKKDIISNIAEDSHLTKKDITEVVDLALTQIFEGLSEGKTVDLAGFGKFEITERKAREG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T ++++I+ + V FK + LK+ + Sbjct: 64 INPLTKEKIQIEASKSVKFKIAKALKEAV 92 >gi|197118442|ref|YP_002138869.1| integration host factor subunit beta [Geobacter bemidjiensis Bem] gi|197087802|gb|ACH39073.1| integration host factor, beta subunit [Geobacter bemidjiensis Bem] Length = 91 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ + LS K + V +F + D+ + G+ I+I +F VK+ + G Sbjct: 1 MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGVGSFVVKEYDAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89 >gi|120597447|ref|YP_962021.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|126172756|ref|YP_001048905.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|146294412|ref|YP_001184836.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|153002323|ref|YP_001368004.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160877047|ref|YP_001556363.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217974911|ref|YP_002359662.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304410864|ref|ZP_07392481.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|307304965|ref|ZP_07584715.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|120557540|gb|ABM23467.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|125995961|gb|ABN60036.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|145566102|gb|ABP77037.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|151366941|gb|ABS09941.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160862569|gb|ABX51103.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217500046|gb|ACK48239.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304350761|gb|EFM15162.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|306912367|gb|EFN42791.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|315269251|gb|ADT96104.1| histone family protein DNA-binding protein [Shewanella baltica OS678] gi|319427766|gb|ADV55840.1| histone family protein DNA-binding protein [Shewanella putrefaciens 200] Length = 90 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ L++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADLTKVEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA L+ Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86 >gi|163849633|ref|YP_001637676.1| integration host factor, beta subunit [Methylobacterium extorquens PA1] gi|218528183|ref|YP_002418999.1| integration host factor subunit beta [Methylobacterium chloromethanicum CM4] gi|254558707|ref|YP_003065802.1| integration host factor [Methylobacterium extorquens DM4] gi|163661238|gb|ABY28605.1| integration host factor, beta subunit [Methylobacterium extorquens PA1] gi|218520486|gb|ACK81071.1| integration host factor, beta subunit [Methylobacterium chloromethanicum CM4] gi|254265985|emb|CAX21735.1| integration host factor (IHF), beta subunit, site-specific recombination [Methylobacterium extorquens DM4] Length = 102 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ +G+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + + VFK ++ R+ Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRL 90 >gi|116624250|ref|YP_826406.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|116227412|gb|ABJ86121.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 108 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D++ + G+++ + V T+F + + +G+ I++ F F+VK + + +G Sbjct: 20 LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T EV I P + V FK L+ Sbjct: 80 RNPRTGAEVSIPPGKAVRFKPGKELQ 105 >gi|225848149|ref|YP_002728312.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643798|gb|ACN98848.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] Length = 100 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 8/97 (8%) Query: 5 ITRSDLVKSISKE----FGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHV 56 + R+D+V I K+ L +++ + V F+ I + G+ + IS F TF + Sbjct: 1 MKRADIVNMIHKDKDLNLSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFII 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 K++ +VGRN +T +E I R + FKA LKK+I Sbjct: 61 KRRKGKVGRNPKTGEEKLIPDRLGISFKAGKELKKKI 97 >gi|172036192|ref|YP_001802693.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC 51142] gi|171697646|gb|ACB50627.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC 51142] Length = 93 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I+ + L++K+++ + L + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEELVNMIAAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N QT Q + I V F A + K+++++ + Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93 >gi|154507606|ref|ZP_02043248.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC 17982] gi|293189276|ref|ZP_06607999.1| DNA-binding protein HU [Actinomyces odontolyticus F0309] gi|153797240|gb|EDN79660.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC 17982] gi|292821739|gb|EFF80675.1| DNA-binding protein HU [Actinomyces odontolyticus F0309] Length = 93 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I++ L++ + + + +S +GEA+K++ + ++ +R Sbjct: 2 SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAV 91 >gi|319942541|ref|ZP_08016851.1| integration host factor subunit beta [Sutterella wadsworthensis 3_1_45B] gi|319803944|gb|EFW00862.1| integration host factor subunit beta [Sutterella wadsworthensis 3_1_45B] Length = 102 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M ++T+S+L+ + R +D + + + + V G I+I F +F +K + Sbjct: 1 MGNSMTKSELLAELYGRLPTFRERDCMDAAGVIIDTMSQTLVEGGRIEIRGFGSFGLKYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN Q V + R V FKA L++R+ Sbjct: 61 PERVGRNPQDGSAVAVRARYTVFFKAGKDLRQRV 94 >gi|18311461|ref|NP_563395.1| DNA-binding protein HU [Clostridium perfringens str. 13] gi|110801137|ref|YP_697167.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124] gi|110803022|ref|YP_699735.1| DNA-binding protein HU [Clostridium perfringens SM101] gi|168213403|ref|ZP_02639028.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969] gi|168217596|ref|ZP_02643221.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239] gi|169343310|ref|ZP_02864320.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495] gi|18146145|dbj|BAB82185.1| probable DNA binding protein [Clostridium perfringens str. 13] gi|110675784|gb|ABG84771.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124] gi|110683523|gb|ABG86893.1| DNA-binding protein HU [Clostridium perfringens SM101] gi|169298608|gb|EDS80689.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495] gi|170715074|gb|EDT27256.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969] gi|182380308|gb|EDT77787.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239] Length = 91 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ G+ +++ F TF + + R G Sbjct: 1 MNKAELITSMAEKSNLTKKDAELALKAFIESVSETLENGDKVQLVGFGTFETRVRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI VFK LK+R+ Sbjct: 61 RNPRTKEVIKIPASIAPVFKPGKELKERV 89 >gi|269121288|ref|YP_003309465.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] gi|268615166|gb|ACZ09534.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] Length = 92 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 41/71 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + +++ +K G ++K S V + S +GE ++ + TF V+++ +R G Sbjct: 1 MSKKEFIEAYAKATGETKKRSEELVNEFLGTVEKSLTKGETVQFVGWGTFGVQKRAARKG 60 Query: 65 RNLQTNQEVKI 75 RN QT +E+KI Sbjct: 61 RNPQTGKEIKI 71 >gi|188579482|ref|YP_001922927.1| integration host factor, beta subunit [Methylobacterium populi BJ001] gi|179342980|gb|ACB78392.1| integration host factor, beta subunit [Methylobacterium populi BJ001] Length = 102 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ +G+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + + VFK ++ R+ Sbjct: 61 GRNPRTGESVSVSEKAIPVFKTGKEMRLRL 90 >gi|240136832|ref|YP_002961299.1| integration host factor (IHF), beta subunit, site-specific recombination [Methylobacterium extorquens AM1] gi|240006796|gb|ACS38022.1| integration host factor (IHF), beta subunit, site-specific recombination [Methylobacterium extorquens AM1] Length = 102 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ +G+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + + VFK ++ R+ Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRL 90 >gi|237807858|ref|YP_002892298.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] gi|237500119|gb|ACQ92712.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] Length = 90 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV IS+ +S+ + R + + ++ G+ + + F TF V+++ SR G Sbjct: 1 MNKSQLVDKISESADISKAAAGRALDAFIEAVGEALKDGDQVSLVGFGTFAVRERASRSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + FKA LK + Sbjct: 61 RNPQTGATIEIAACKQPAFKAGKALKDSV 89 >gi|319403502|emb|CBI77081.1| integration host factor beta chain [Bartonella rochalimae ATCC BAA-1498] gi|319406416|emb|CBI80056.1| integration host factor beta chain [Bartonella sp. 1-1C] Length = 92 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D+ V+ +F +I + G+ +++ F F +K + +R Sbjct: 1 MVKSELVQIIARHNPHLMQRDAENVVSAIFEKISAALANGQRVELRGFGAFSIKTRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRL 90 >gi|315606150|ref|ZP_07881178.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str. F0310] gi|315312108|gb|EFU60197.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str. F0310] Length = 93 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I++ L++ + + + +S +GEA+K++ + ++ +R Sbjct: 2 SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAV 91 >gi|242281191|ref|YP_002993320.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242124085|gb|ACS81781.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 97 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 46/83 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ +V I ++ +R + V ++ + + + + A+ IS F F K +R Sbjct: 6 TLTKASVVDYIYEKTDRNRAEIKELVESILDIMKQAVKKDHAMLISGFGKFEAYDKNARK 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 GRN QTN+ + + R+VVVF+ S Sbjct: 66 GRNPQTNEAITLPARKVVVFRLS 88 >gi|320539744|ref|ZP_08039407.1| putative HU, DNA-binding transcriptional regulator, alpha subunit [Serratia symbiotica str. Tucson] gi|320030209|gb|EFW12225.1| putative HU, DNA-binding transcriptional regulator, alpha subunit [Serratia symbiotica str. Tucson] Length = 90 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLVAITESLKEGDAVQLVGFGTFKVNHRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|302878691|ref|YP_003847255.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302581480|gb|ADL55491.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 97 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ +F L+ D V T+ +E+ + RG I+I F +F + + R Sbjct: 1 MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FK L++R+ Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90 >gi|291279359|ref|YP_003496194.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1] gi|290754061|dbj|BAI80438.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1] Length = 90 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ + GL + ++ R + + ++ G+ + + F TF V ++ R G Sbjct: 1 MNKKELIEKIASKAGLKKSEAERALAAFEEAVIEALKAGDKVTLVGFGTFSVSERKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ I + F A +LK Sbjct: 61 RNPQTGEEIIIPATKTPKFSAGKLLK 86 >gi|161598603|ref|YP_001573818.1| small DNA-binding protein [Bacillus thuringiensis serovar israelensis] gi|228905297|ref|ZP_04069279.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|21685470|emb|CAD30132.1| small DNA-binding protein (bacterial histone-like family) [Bacillus thuringiensis serovar israelensis] gi|228854334|gb|EEM99010.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 92 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + L + ++ V + I + G+ +++ F +F VK++ +R G Sbjct: 1 MNKSELIKQVAIQSELKKPQASLAVDAVLESIQHALQNGDHVQLFGFGSFEVKERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + I + FKA LK+ + Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAV 89 >gi|120603250|ref|YP_967650.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46448590|gb|AAS95244.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120563479|gb|ABM29223.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] Length = 91 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL+ K + + + D+ GE++ + F +F V + +R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I +VV F +LK + Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAV 90 >gi|15677102|ref|NP_274254.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58] gi|121634923|ref|YP_975168.1| putative DNA-binding protein [Neisseria meningitidis FAM18] gi|161870073|ref|YP_001599243.1| DNA-binding protein [Neisseria meningitidis 053442] gi|218768232|ref|YP_002342744.1| putative DNA-binding protein [Neisseria meningitidis Z2491] gi|254805009|ref|YP_003083230.1| DNA-binding protein [Neisseria meningitidis alpha14] gi|304387508|ref|ZP_07369697.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|54036950|sp|P64389|DBHB_NEIMB RecName: Full=DNA-binding protein HU-beta gi|54041019|sp|P64388|DBHB_NEIMA RecName: Full=DNA-binding protein HU-beta gi|7226469|gb|AAF41611.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58] gi|120866629|emb|CAM10380.1| putative DNA-binding protein [Neisseria meningitidis FAM18] gi|121052240|emb|CAM08565.1| putative DNA-binding protein [Neisseria meningitidis Z2491] gi|161595626|gb|ABX73286.1| DNA-binding protein [Neisseria meningitidis 053442] gi|254668551|emb|CBA06006.1| DNA-binding protein [Neisseria meningitidis alpha14] gi|254669519|emb|CBA03455.1| DNA-binding protein HU-beta [Neisseria meningitidis alpha153] gi|261392508|emb|CAX50059.1| DNA-binding protein HU [Neisseria meningitidis 8013] gi|304338395|gb|EFM04516.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|308389323|gb|ADO31643.1| putative DNA-binding protein [Neisseria meningitidis alpha710] gi|316985087|gb|EFV64040.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76] gi|319410479|emb|CBY90840.1| DNA-binding protein HU-A [Neisseria meningitidis WUE 2594] gi|325128364|gb|EGC51248.1| DNA-binding protein HU-beta [Neisseria meningitidis N1568] gi|325132586|gb|EGC55279.1| DNA-binding protein HU-beta [Neisseria meningitidis M6190] gi|325134523|gb|EGC57168.1| DNA-binding protein HU-beta [Neisseria meningitidis M13399] gi|325136284|gb|EGC58892.1| DNA-binding protein HU-beta [Neisseria meningitidis M0579] gi|325138359|gb|EGC60928.1| DNA-binding protein HU-beta [Neisseria meningitidis ES14902] gi|325140540|gb|EGC63061.1| DNA-binding protein HU-beta [Neisseria meningitidis CU385] gi|325144626|gb|EGC66925.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240013] gi|325198363|gb|ADY93819.1| DNA-binding protein HU-beta [Neisseria meningitidis G2136] gi|325200140|gb|ADY95595.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76] gi|325202076|gb|ADY97530.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240149] gi|325204214|gb|ADY99667.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240355] gi|325205994|gb|ADZ01447.1| DNA-binding protein HU-beta [Neisseria meningitidis M04-240196] gi|325208170|gb|ADZ03622.1| DNA-binding protein HU-beta [Neisseria meningitidis NZ-05/33] Length = 89 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E +S+ + + + N + + +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I + F+A LK Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALK 86 >gi|119488961|ref|ZP_01621896.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] gi|119454917|gb|EAW36060.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] Length = 98 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ + + G+++K + V+ + I D+ GE + + F +F + + +R G Sbjct: 1 MNKEQLVQETAFKAGVTKKQADAIVSAICESIMDAVAEGEKVTLVGFGSFEARHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T Q + I V F A K+ + ++ Sbjct: 61 RNPSTGQPMTIPETTVPAFSAGKAFKEMVAEE 92 >gi|282899711|ref|ZP_06307675.1| Histone-like protein DNA-binding protein [Cylindrospermopsis raciborskii CS-505] gi|281195590|gb|EFA70523.1| Histone-like protein DNA-binding protein [Cylindrospermopsis raciborskii CS-505] Length = 94 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + ++ + I ++ G+ + + F +F + + +R G Sbjct: 1 MNKGELVDAVAEKANVTKKQADAVLSAAIDTIVEAVASGDKVTLVGFGSFESRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKV 89 >gi|298489847|ref|YP_003720024.1| histone family protein DNA-binding protein ['Nostoc azollae' 0708] gi|298231765|gb|ADI62901.1| histone family protein DNA-binding protein ['Nostoc azollae' 0708] Length = 94 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + ++ I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLSAAIETIIEAVASGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I +V F A + ++R+ Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFRERV 89 >gi|329120185|ref|ZP_08248854.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC BAA-1200] gi|327463337|gb|EGF09657.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC BAA-1200] Length = 97 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 43/91 (47%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI +++LVK + +S + R + L + + G + I+ F TF + K R Sbjct: 5 QTIHKTELVKQAAALSDISTAAAARLIDNLLDTVKTHLRNGFKVSITDFGTFEAQSKPER 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + + I V FKA LK + Sbjct: 65 SGRNPQTGEAITIAAHMAVKFKAGKALKDAV 95 >gi|269925821|ref|YP_003322444.1| histone family protein DNA-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269789481|gb|ACZ41622.1| histone family protein DNA-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 84 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 45/80 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+ +++ G+++ + + +EI S +GE + I F TF V ++ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKAS 86 +T +E++I + V F+ S Sbjct: 64 PRTGEEIEIPGGKRVTFRMS 83 >gi|224025287|ref|ZP_03643653.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM 18228] gi|224018523|gb|EEF76521.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM 18228] Length = 93 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/92 (22%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I+ + GL ++ + V + + S + GE + + F +F +K + + Sbjct: 1 MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + + + FK S R+ D Sbjct: 61 RNISRNTTIIVPAHNIPAFKPSKAFAGRMKSD 92 >gi|113968892|ref|YP_732685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|113883576|gb|ABI37628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] Length = 90 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA L+ Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86 >gi|258593296|emb|CBE69635.1| DNA-binding protein HU-beta (NS1) (HU-1) [NC10 bacterium 'Dutch sediment'] Length = 90 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++K+ +++K + + ++ I DS +G+ + + F TF V ++ +R G Sbjct: 1 MTKAELVDKVAKDACITKKAAESALASVTAGIRDSLKKGKKVTLVGFGTFSVARRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +KI + F+A LK Sbjct: 61 RNPQTGDIIKIKAAKTPRFRAGKALK 86 >gi|269102377|ref|ZP_06155074.1| integration host factor beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162275|gb|EEZ40771.1| integration host factor beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 95 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K + + ++ + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEQMATTLEQGERIEIRGFGSFSLHFRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++D + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRV 90 >gi|15639243|ref|NP_218692.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str. Nichols] gi|189025485|ref|YP_001933257.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14] gi|14194594|sp|O83278|DBH_TREPA RecName: Full=DNA-binding protein HU gi|3322519|gb|AAC65236.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str. Nichols] gi|189018060|gb|ACD70678.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14] Length = 105 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 TRS +V ++ E LSR+ R V + + + + RGE +++ F F + + + VG+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +++T + V I VVVF+ S KR+ +RG Sbjct: 67 SIKTGEVVSIPSHCVVVFRPS----KRLKSAVRG 96 >gi|257464686|ref|ZP_05629057.1| integration host factor subunit beta [Actinobacillus minor 202] gi|257450346|gb|EEV24389.1| integration host factor subunit beta [Actinobacillus minor 202] Length = 93 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 V + +I S GE I+I F +F + + +RVGRN +T + VK++ + V FKA Sbjct: 26 VREILEKIMFSLENGERIEIRGFGSFSLHHRDARVGRNPKTGESVKLEAKSVPHFKAGKE 85 Query: 89 LKKRI 93 LK+R+ Sbjct: 86 LKERV 90 >gi|254494814|ref|ZP_01051666.2| DNA-binding protein [Polaribacter sp. MED152] gi|213690396|gb|EAQ41094.2| DNA-binding protein [Polaribacter sp. MED152] Length = 117 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ + G+S+ + + + + + + G+ + + F TF V + +R G Sbjct: 28 MNKSDLIDAMAADAGISKVAAKAALESFTDNVTSALKGGDKVALVGFGTFSVSHRAARSG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + ++I + V FKA + L Sbjct: 88 RNPQTGKTIQIAAKNVAKFKAGAGL 112 >gi|212696155|ref|ZP_03304283.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM 7454] gi|325846494|ref|ZP_08169409.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676784|gb|EEB36391.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM 7454] gi|325481252|gb|EGC84293.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 93 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ R + + +S + E +++ F TF + + +R G Sbjct: 1 MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLQKEEKVQLVGFGTFETRDRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + EV KI + VFKA LK+ + Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAV 90 >gi|220923813|ref|YP_002499115.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS 2060] gi|219948420|gb|ACL58812.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS 2060] Length = 66 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 3/50 (6%) Query: 44 EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 EA+++ V+ KG RVGRN +T EV I PRRV+VFK S++LK + Sbjct: 9 EAVRLRLLV---VRDKGKRVGRNPKTGVEVAIAPRRVMVFKPSNVLKAHV 55 >gi|17547240|ref|NP_520642.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000] gi|187929862|ref|YP_001900349.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|207725148|ref|YP_002255545.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum MolK2] gi|207742516|ref|YP_002258908.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum IPO1609] gi|241663971|ref|YP_002982331.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|300690608|ref|YP_003751603.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] gi|300703213|ref|YP_003744815.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|309781438|ref|ZP_07676174.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA] gi|17429542|emb|CAD16228.1| probable dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum GMI1000] gi|187726752|gb|ACD27917.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|206590380|emb|CAQ37341.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum MolK2] gi|206593908|emb|CAQ60835.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum IPO1609] gi|240865998|gb|ACS63659.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|299065882|emb|CBJ37061.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CMR15] gi|299070876|emb|CBJ42178.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|299077668|emb|CBJ50304.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] gi|308919851|gb|EFP65512.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA] Length = 94 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 44/85 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+S+LV +I+K+ LS + R + + I + +G I + F +F ++ +R GR Sbjct: 3 TKSELVAAIAKDAELSNAAAERALNSALENIKKTVAKGGTITLVGFGSFSSGKRAARTGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N +T + +KI + V F A K Sbjct: 63 NPRTGEAIKIPATKTVKFTAGKGFK 87 >gi|1093154|prf||2103146A HU protein Length = 94 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLEREKV 89 >gi|292492662|ref|YP_003528101.1| integration host factor subunit beta [Nitrosococcus halophilus Nc4] gi|291581257|gb|ADE15714.1| integration host factor, beta subunit [Nitrosococcus halophilus Nc4] Length = 96 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS +D V TL + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAQRQALLSYRDVELAVKTLLEVMSQALAQGERIEIRGFGSFSLHYRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 61 GRNPKTGDAVPLPSKYVPHFKPGKELRERV 90 >gi|170740732|ref|YP_001769387.1| integration host factor subunit beta [Methylobacterium sp. 4-46] gi|168195006|gb|ACA16953.1| integration host factor, beta subunit [Methylobacterium sp. 4-46] Length = 106 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ RG+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVESIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + + VFK ++ R+ Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRL 90 >gi|209965676|ref|YP_002298591.1| DNA-binding protein HupB [Rhodospirillum centenum SW] gi|209959142|gb|ACI99778.1| DNA-binding protein HupB [Rhodospirillum centenum SW] Length = 91 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL +++++ G S+ + + V +F+ I + +GE ++++ F TF V ++ +R G Sbjct: 1 MQKADLAEAVAQATGASKAAAAKTVDAIFDAIQQALAKGEDVRLTGFGTFSVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + F A LK + Sbjct: 61 RNPQTGATIQIAASKQPKFTAGKALKDAV 89 >gi|311233014|gb|ADP85868.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 132 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 4 TITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++T+++LV+ I + GL+ K + + + D+ GE++ + F +F V + +R Sbjct: 41 SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 100 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I +VV F +LK Sbjct: 101 KGRNPRTGEEIVIPAGKVVKFTPGKLLK 128 >gi|323699317|ref|ZP_08111229.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323459249|gb|EGB15114.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 94 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 43/83 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ +V I + +R + V + + S + A+ IS F F K +R Sbjct: 3 TLTKAGIVDYIYERTDKNRAEIKDLVEIILEIMKKSIKKDHALLISGFGKFEAYDKRARK 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 GRN QT Q + + PR+VVVF+ S Sbjct: 63 GRNPQTTQTITLPPRKVVVFRLS 85 >gi|313205318|ref|YP_004043975.1| bacterial nucleoid protein hbs [Paludibacter propionicigenes WB4] gi|312444634|gb|ADQ80990.1| bacterial nucleoid protein Hbs [Paludibacter propionicigenes WB4] Length = 90 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 40/69 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GLS+ D+ + + + + D+ V G+ + + F TF V ++ +R G Sbjct: 1 MNKAELINAIAAEAGLSKADAKKALDAVVKSVSDALVAGDKVSLVGFGTFSVSERSARSG 60 Query: 65 RNLQTNQEV 73 N T Q + Sbjct: 61 INPATKQPI 69 >gi|242278247|ref|YP_002990376.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121141|gb|ACS78837.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 90 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT+ LVK I ++ LS KD++ + + + I D + ++ F TF ++ Sbjct: 1 MSKTV----LVKKIREKLELSAKDASAALDGVLSAIEDGLKEEGNVTLTGFGTFKTVERS 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +R GRN QT + ++I R V F LK Sbjct: 57 ARTGRNPQTGEAIQIPASRGVKFTPGKFLK 86 >gi|323498789|ref|ZP_08103775.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326] gi|323316151|gb|EGA69176.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326] Length = 90 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I V F A LK + Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAV 89 >gi|240849695|ref|YP_002971083.1| integration host factor beta subunit [Bartonella grahamii as4aup] gi|240266818|gb|ACS50406.1| integration host factor beta subunit [Bartonella grahamii as4aup] Length = 92 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + G +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + + FK L+ R+ Sbjct: 61 GRNPRTGEAVSVEEKWIPFFKTGKDLRDRL 90 >gi|117919001|ref|YP_868193.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] gi|117611333|gb|ABK46787.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] Length = 90 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA L+ Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86 >gi|302879154|ref|YP_003847718.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302581943|gb|ADL55954.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 97 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ +F L+ D V T+ +E+ + RG I+I F +F + + R Sbjct: 1 MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FK L++R+ Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90 >gi|221135499|ref|ZP_03561802.1| HU family DNA-binding protein [Glaciecola sp. HTCC2999] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ + + ++ R + + +++ F TF V+++ +R G Sbjct: 1 MNKSELIEKIADAADIKKVEAGRALDAFIEAVTAELKADGTVQLVGFGTFQVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I +V FKA LK Sbjct: 61 RNPQTGAEIQIAAAKVPAFKAGKALK 86 >gi|295098884|emb|CBK87973.1| Bacterial nucleoid DNA-binding protein [Eubacterium cylindroides T2-87] Length = 96 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 46/92 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K + R L + + +S+KD++ + +FNE+ +S + IS F F + + Sbjct: 1 MAKFVNRESLAQVLCDNLNISKKDASYAIELIFNEMSESLASDGYVDISGFGKFEIFFRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R+G N T + + I ++ F+ S LK + Sbjct: 61 ERMGINPVTKERIMIPATKLPKFRPSQTLKNK 92 >gi|94676703|ref|YP_588518.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219853|gb|ABF14012.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 94 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ IS + LS+ + + + I +S G+ +++ F TF + + R+G Sbjct: 1 MNKTQLIDVISDKADLSKAQAKSALESTLAAITESLRGGDTVQLVGFGTFKINHRSERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + L+K + Sbjct: 61 RNPQTGKEIKIAAVNVPTFISGKTLRKAV 89 >gi|91790778|ref|YP_551729.1| histone-like DNA-binding protein [Polaromonas sp. JS666] gi|91700658|gb|ABE46831.1| histone-like DNA-binding protein [Polaromonas sp. JS666] Length = 103 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L+ +I+ E LS+ + R + L I + +G+ +++ F TF ++ +R G Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T + VKI V F A + K Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFK 86 >gi|68250247|ref|YP_249359.1| integration host factor subunit beta [Haemophilus influenzae 86-028NP] gi|148825815|ref|YP_001290568.1| integration host factor subunit beta [Haemophilus influenzae PittEE] gi|81335332|sp|Q4QJU8|IHFB_HAEI8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918548|sp|A5UBN4|IHFB_HAEIE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|68058446|gb|AAX88699.1| integration host factor beta-subunit [Haemophilus influenzae 86-028NP] gi|148715975|gb|ABQ98185.1| integration host factor beta-subunit [Haemophilus influenzae PittEE] gi|309972959|gb|ADO96160.1| Integration host factor, beta-subunit [Haemophilus influenzae R2846] Length = 94 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S K+ LS K+ V + I S G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLSAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|257091641|ref|YP_003165284.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048650|gb|ACV37837.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 103 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+ ++ F L KD+ V + + I + +G+ ++I F +F + + +R Sbjct: 1 MTRSDLITVLASRFPSLVAKDAEIAVKEILDAIGIALAQGDRVEIRGFGSFRLNYRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + + V F+AS +++R+ Sbjct: 61 GRNPKSGEPVAVAEKYVPHFQASKEMRERV 90 >gi|251772980|gb|EES53537.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 96 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 +T+ +LV+ ++++F R++ R + LF E +R G+ +++ F V+ + R Sbjct: 1 MTKGELVQKLARQFPGIRREDARIMIDLFLESMKEGLREGDTVELRDFGVLRVRTRSERK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T V + ++V FK S ILK Sbjct: 61 ARNPRTGTSVVVGSKKVPYFKQSRILK 87 >gi|170720930|ref|YP_001748618.1| histone family protein DNA-binding protein [Pseudomonas putida W619] gi|169758933|gb|ACA72249.1| histone family protein DNA-binding protein [Pseudomonas putida W619] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + + G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI +V FKA LK + Sbjct: 61 RNPQTGKTIKIAAAKVPGFKAGKGLKDAV 89 >gi|225010796|ref|ZP_03701264.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] gi|225005004|gb|EEG42958.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGGRVSLVGFGSWSVSRRNARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI + VV FKA + L K + Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELSKSV 89 >gi|254456031|ref|ZP_05069460.1| integration host factor beta-subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083033|gb|EDZ60459.1| integration host factor beta-subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 97 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 I +S L+K +S + +KD +F + EI ++ RG+ +++ F F + +R Sbjct: 2 AIVKSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + RN +T ++V ++ + FK S L K++ D+ Sbjct: 62 ISRNPKTGEKVNTPQKKTIHFKMSKDLFKKLNDE 95 >gi|198283163|ref|YP_002219484.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666540|ref|YP_002425392.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247684|gb|ACH83277.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518753|gb|ACK79339.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC 23270] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I++E G++R + + L + D+ G+ + + F +F V + +R G Sbjct: 1 MNKSELIEKIAEEAGVTRAAAGHTLDALVKVVTDALKAGDQVTLVGFGSFLVSSREARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T E+ I R FKA L+ + Sbjct: 61 RNPATGAEIMIAASRTPKFKAGKALRDAV 89 >gi|144901346|emb|CAM78210.1| DNA-binding protein HU [Magnetospirillum gryphiswaldense MSR-1] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GL++ DS + V +F I + G+ +++ F +F V + + G Sbjct: 1 MNKADLVSRVAELSGLTKADSEKAVDGVFEAITAALKGGDEVRLVGFGSFSVASRAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++++I + F A LK+ + Sbjct: 61 RNPRTGEKIQIPASKQPKFSAGKGLKEAV 89 >gi|149199234|ref|ZP_01876272.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155] gi|149137659|gb|EDM26074.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155] Length = 100 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DLV I+ E L++++ V + I + G +++ +F F +K + R+G Sbjct: 1 MTKRDLVVRIADESKLNQQEVMNVVQKTLDYITNELAAGRNVELRNFGVFELKVRKQRIG 60 Query: 65 RNL-QTNQEVKIDPRRVVVFKASSILKKRI 93 RN + EV I R VV FK+ ++K+++ Sbjct: 61 RNPNKPENEVPIPERVVVKFKSGKVMKEKV 90 >gi|291551159|emb|CBL27421.1| Bacterial nucleoid DNA-binding protein [Ruminococcus torques L2-14] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ +S+KDS + + + + + G+ +++ F TF V ++ +R G Sbjct: 1 MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVTEQLKAGDKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + FKA LK I Sbjct: 61 RNPQTGKTMTIAACKAPKFKAGKALKDAI 89 >gi|256545177|ref|ZP_05472543.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170] gi|256399218|gb|EEU12829.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170] Length = 93 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ R + + +S + E +++ F TF + + +R G Sbjct: 1 MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLKKEEKVQLVGFGTFETRDRKAREG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + EV KI + VFKA LK+ + Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAV 90 >gi|305666098|ref|YP_003862385.1| DNA-binding protein HU [Maribacter sp. HTCC2170] gi|88707532|gb|EAQ99775.1| DNA-binding protein HU [Maribacter sp. HTCC2170] Length = 96 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + G+ + D V + E+ S G+ + + F +F +K + + G Sbjct: 1 MTKAEIVSKISDKLGIEKGDVQATVESFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVF 85 >gi|268686838|ref|ZP_06153700.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|268627122|gb|EEZ59522.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-93-1035] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|260437765|ref|ZP_05791581.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876] gi|292809787|gb|EFF68992.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +I+++ +S+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELASAIAEKAEISKKDAEKALKAFTEVVAEELKKGEKIQLVGFGTFEVGERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + +KI + FKA LK Sbjct: 61 INPRTRETIKIAAAKTPKFKAGKQLK 86 >gi|218679781|ref|ZP_03527678.1| integration host factor subunit beta [Rhizobium etli CIAT 894] Length = 85 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L +D V + +EI D+ G +++ F F VK + SR GRN +T V ++ + Sbjct: 3 LYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEKW 62 Query: 80 VVVFKASSILKKRI 93 V FK L++R+ Sbjct: 63 VPFFKTGKELRERL 76 >gi|76798122|ref|ZP_00780376.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21] gi|76586530|gb|EAO63034.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21] Length = 85 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN QT Sbjct: 1 LIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILK 90 E++I +V FKA LK Sbjct: 61 GAEIEIAASKVPAFKAGKALK 81 >gi|322420779|ref|YP_004200002.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320127166|gb|ADW14726.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 93 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + G L+RKDS V+ +F+ + ++ G+ ++I F +F ++ + R Sbjct: 1 MTKSELIDKLVEVRGALTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + V I ++ FK L++R+ Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERV 90 >gi|118590043|ref|ZP_01547447.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614] gi|118437540|gb|EAV44177.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614] Length = 91 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F+ + + G+ ++I F F V ++ + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTQTLKSGDEVRIIGFGNFTVSERAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89 >gi|27904545|ref|NP_777671.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340030|sp|Q89B22|DBH_BUCBP RecName: Full=DNA-binding protein HU gi|27903942|gb|AAO26776.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 42/87 (48%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +S+L+ ISK+ LS+ + I S G ++++ F TF V + +R+GRN Sbjct: 3 KSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT Q + I + VF + K I Sbjct: 63 PQTGQTIHISATKTPVFISGKTFKTAI 89 >gi|282860074|ref|ZP_06269155.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282587162|gb|EFB92386.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ E G+S+KD + V + + I DS + + E + + F +F VK + + Sbjct: 1 MTKADIINEIATETGISKKDVSAVVESFMDAIKDSLLDKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I FK + K ++DM+ Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMK 91 >gi|10955033|ref|NP_059689.1| hypothetical protein pTi_017 [Agrobacterium tumefaciens] gi|1163198|gb|AAC28112.1| hupT [Agrobacterium tumefaciens] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ + V ++F +I D+A+ G I SF F +K R GR Sbjct: 3 TTNEIADKIAAEQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 N T +KI + + F L K + D + G Sbjct: 63 NPATGATIKIAASKKLTF----TLGKAVKDALNG 92 >gi|291294582|ref|YP_003505980.1| histone family protein DNA-binding protein [Meiothermus ruber DSM 1279] gi|290469541|gb|ADD26960.1| histone family protein DNA-binding protein [Meiothermus ruber DSM 1279] Length = 100 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL+ ++ GL +KD+ V +++ ++ G ++++ F TF V+ + +R G Sbjct: 14 DLIDQVAATAGLKKKDAKAAVDAFLSKVEEALKAGNKVQLTGFGTFEVRSRKARTGVKPG 73 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T Q++KI + FK LK+ + Sbjct: 74 TTQKIKIPASKYPAFKPGKALKETV 98 >gi|146297905|ref|YP_001192496.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] gi|146152323|gb|ABQ03177.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + G+++ + + + + + +G I + F ++ V + +R G Sbjct: 1 MNKSELIDAIAADAGITKAAAKLALESFLGNVGTTLKKGGRISLVGFGSWSVSARAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA + L+ + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAV 89 >gi|319943162|ref|ZP_08017445.1| integration host factor beta subunit [Lautropia mirabilis ATCC 51599] gi|319743704|gb|EFV96108.1| integration host factor beta subunit [Lautropia mirabilis ATCC 51599] Length = 116 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+S+L+ +++ F L KD+ V T+ + + S I+I F TF + + SR Sbjct: 17 TMTKSELIAKLAERFPQLVAKDAEYAVRTILDAMARSLADRHRIEIRGFGTFALSHRHSR 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN ++ + V + + V FK L++ + Sbjct: 77 MGRNPKSGEPVPVPEKLVPHFKPGKQLRESV 107 >gi|210623292|ref|ZP_03293709.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM 13275] gi|210153693|gb|EEA84699.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM 13275] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++K++ + + ++ V GE +++ F TF + + +R G Sbjct: 1 MNKAELVSKMAEKSELTKKEAEAALNAFMESVEEALVSGEKVQLVGFGTFETRDRAARQG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV I + VFKA LK ++ Sbjct: 61 RNPRNPEEVISIPASKAPVFKAGKGLKDKV 90 >gi|317503239|ref|ZP_07961297.1| DNA-binding protein HU [Prevotella salivae DSM 15606] gi|315665652|gb|EFV05261.1| DNA-binding protein HU [Prevotella salivae DSM 15606] Length = 97 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%) Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78 G ++ D + V TL + +S GE + +S F TF VK++ RV N T + + P+ Sbjct: 15 GYTQADVQKLVNTLIEGMGNSFEAGENVSLSGFGTFEVKKRMERVVVNPSTGLRMLVPPK 74 Query: 79 RVVVFKASSILKKRI 93 V+ FK ++ +K+++ Sbjct: 75 LVLAFKPNASVKEKL 89 >gi|197119620|ref|YP_002140047.1| integration host factor subunit beta [Geobacter bemidjiensis Bem] gi|253699630|ref|YP_003020819.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|197088980|gb|ACH40251.1| integration host factor, beta subunit [Geobacter bemidjiensis Bem] gi|251774480|gb|ACT17061.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 93 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + G L+RKDS V+ +F+ + ++ G+ ++I F +F ++ + R Sbjct: 1 MTKSELIDKLVEVRGVLTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + V I ++ FK L++R+ Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERV 90 >gi|239995520|ref|ZP_04716044.1| histone-like DNA-binding protein [Alteromonas macleodii ATCC 27126] gi|332141941|ref|YP_004427679.1| histone-like DNA-binding protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551963|gb|AEA98681.1| histone-like DNA-binding protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332992310|gb|AEF02365.1| histone-like DNA-binding protein [Alteromonas sp. SN2] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + + G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAAGADISKAAAGRALDAFTDSVTAALKDGDQVALVGFGTFSVRERSARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + ++I +V FKA LK Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALK 86 >gi|261377756|ref|ZP_05982329.1| integration host factor, beta subunit [Neisseria cinerea ATCC 14685] gi|269146042|gb|EEZ72460.1| integration host factor, beta subunit [Neisseria cinerea ATCC 14685] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGDRVEVPEKHVPHFKPGKELRERV 95 >gi|118475521|ref|YP_892021.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40] gi|118414747|gb|ABK83167.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++ V ++ + GL++KD+ + I + +G+++ F TF V ++ +R Sbjct: 1 MTKAEFVGLVASKAGLTKKDTELALDGFLGSISEVLTKGDSVTFVGFGTFGVTERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG-RKCN 103 + T +E+K+ ++ V FK LK + G KC+ Sbjct: 61 KVPSTGKEIKVPAKKAVKFKVGKNLKDAVASAGCGSSKCS 100 >gi|91788925|ref|YP_549877.1| nucleoid protein Hbs [Polaromonas sp. JS666] gi|91698150|gb|ABE44979.1| bacterial nucleoid protein Hbs [Polaromonas sp. JS666] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGSVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86 >gi|49473700|ref|YP_031742.1| integration host factor subunit beta [Bartonella quintana str. Toulouse] gi|49239203|emb|CAF25520.1| Integration host factor beta-subunit [Bartonella quintana str. Toulouse] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + G +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V ++ + + FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWIPFFKTGKDLRDRL 90 >gi|224170258|ref|XP_002192729.1| PREDICTED: similar to DNA-binding protein hu homolog, partial [Taeniopygia guttata] Length = 90 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I+K G+ + V L I DS GE + + F +F VK++ + Sbjct: 1 MTKAEIVTEIAKTTGIEKASVLAVVEGLMTSIKDSLAHGENVYLRGFGSFIVKERKEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N + I + FK ++ KK + Sbjct: 61 RNISKNTTIIIPAHNIPAFKPAAEFKKVV 89 >gi|332827350|gb|EGK00110.1| hypothetical protein HMPREF9455_03576 [Dysgonomonas gadei ATCC BAA-286] Length = 88 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ GLS+ DS + + + G + + F TF V QK +R G Sbjct: 1 MNKTELINAIAEKSGLSKVDSKKALEAFIESVTGEVKAGGKVALVGFGTFSVTQKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T + I ++ V FKA + L Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85 >gi|90423898|ref|YP_532268.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB18] gi|90105912|gb|ABD87949.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB18] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 L ++++E LS+K + + L I +GE I+I V+++ +R+GRN Sbjct: 20 HLAAALAEEHELSKKQTETILGDLVGRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 79 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T + ++I + V F+A+ LK+ + Sbjct: 80 TGEAIQIKASKKVAFRAAKELKEAV 104 >gi|225011859|ref|ZP_03702297.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] gi|225004362|gb|EEG42334.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] Length = 90 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+S+ + + + + + + +G + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGISKAAAKKALESFLGSVGGTLKKGGRVSLVGFGSWSVSKRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT +KI + VV FKA + L Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAEL 85 >gi|288941154|ref|YP_003443394.1| histone family protein DNA-binding protein [Allochromatium vinosum DSM 180] gi|288896526|gb|ADC62362.1| histone family protein DNA-binding protein [Allochromatium vinosum DSM 180] Length = 90 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ +++ +S+ + R + + I + G+ + + F TF +K++ +R G Sbjct: 1 MNKSELIEKMAEAADISKAAAGRALDAFTDSIAVALKEGDTVSLIGFGTFSLKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + FKA LK + Sbjct: 61 RNPQTGATIEIKASKTPSFKAGKALKDAV 89 >gi|218261010|ref|ZP_03476021.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii DSM 18315] gi|218224259|gb|EEC96909.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii DSM 18315] Length = 136 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+ L+K +++ + + +F+ + I + GE + I F + R GR Sbjct: 45 TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 104 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 NL+T +E KI R V FKAS IL +++ Sbjct: 105 NLRTGEECKIRARTSVKFKASEILIQKL 132 >gi|262273289|ref|ZP_06051104.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886] gi|262222662|gb|EEY73972.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886] Length = 90 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ LS+ + + I + G+ +++ F TF V + +R G Sbjct: 1 MNKTNLIDLIAEKADLSKAQAKAALEATLAGIEGALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT QE++I V F A LK + Sbjct: 61 RNPQTGQEIQIAAANVPAFVAGKALKDAV 89 >gi|221104615|ref|XP_002170589.1| PREDICTED: similar to DNA binding protein hu-like protein [Hydra magnipapillata] Length = 90 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +S + GL++KDS + V ++F+ I + + F +F+V+ +R G Sbjct: 1 MNKQDLIDFVSAKTGLTKKDSGQAVDSVFDGIISGLKASKDARFVGFGSFNVQATMARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E+ I + FKA K+ + Sbjct: 61 RNPRTGAEIDIPASNRITFKAGKEFKESV 89 >gi|196232747|ref|ZP_03131598.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] gi|196223207|gb|EDY17726.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] Length = 107 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +LV IS E GL + V + I D+ +G+ +++ +F VK RV Sbjct: 3 TLTKRELVVKISNETGLVQHQVFDVVQRTLDHITDALAQGDTVELRNFGILEVKLTKPRV 62 Query: 64 GRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93 GRN Q I R V FK+ I+++++ Sbjct: 63 GRNPNQPGSSFVIPARATVKFKSGKIMRQKV 93 >gi|187934552|ref|YP_001884411.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B] gi|188590511|ref|YP_001919603.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43] gi|251781035|ref|ZP_04823955.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187722705|gb|ACD23926.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B] gi|188500792|gb|ACD53928.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43] gi|243085350|gb|EES51240.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 92 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + + ++ GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALESGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I V VFK K ++ Sbjct: 61 RNPRTKEVINIPATTVPVFKPGKEFKDKV 89 >gi|148240879|ref|YP_001220380.1| histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1] gi|146411255|gb|ABQ39708.1| Histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1] Length = 130 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ + I+ E L++ + V ++F I D+AV G + F F VK +R GR Sbjct: 32 TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGR 91 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 N T + I R + F + K I D + G D + Sbjct: 92 NPSTGATIAIAASRKLTFTPA----KAIKDSLNGGTIPNDGAS 130 >gi|297617754|ref|YP_003702913.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145591|gb|ADI02348.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 112 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 56/100 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVKS++++ G+++K++ + + I ++ G+ ++I F TF V+ + +R Sbjct: 1 MNKAELVKSLAEKAGVTQKEAGKVLDAAVASIQEALAGGDKVQIIGFGTFEVRNRRARKV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 + T +E+++ RV FK LK+ ++ +K K Sbjct: 61 ISPATGEEIEVPATRVPAFKPGKSLKEAVVIKEEPKKTGK 100 >gi|317055654|ref|YP_004104121.1| histone family protein DNA-binding protein [Ruminococcus albus 7] gi|315447923|gb|ADU21487.1| histone family protein DNA-binding protein [Ruminococcus albus 7] Length = 92 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ G ++K++ + + + I ++ +GE + I F TF V+ + ++ Sbjct: 1 MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGEKVAIPGFGTFEVRDRAAKKS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + + + ++V FKA+ LK Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALK 86 >gi|258545129|ref|ZP_05705363.1| integration host factor subunit beta [Cardiobacterium hominis ATCC 15826] gi|258519648|gb|EEV88507.1| integration host factor subunit beta [Cardiobacterium hominis ATCC 15826] Length = 96 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + L +D V + ++C S +G+ ++I F +F + + +R Sbjct: 1 MTKSELIDRLCMRYPQLRSQDVEEAVKLIIEKVCQSLEKGDRVEIRGFGSFSLHYREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++ + + F+A L++R+ Sbjct: 61 GRNPKTGDSVEVPSKSIPYFRAGKELRERV 90 >gi|160884102|ref|ZP_02065105.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483] gi|237717231|ref|ZP_04547712.1| DNA-binding protein HU-beta [Bacteroides sp. D1] gi|237718986|ref|ZP_04549467.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4] gi|260173110|ref|ZP_05759522.1| DNA-binding protein HU-beta [Bacteroides sp. D2] gi|262405998|ref|ZP_06082548.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|293368714|ref|ZP_06615319.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|294647974|ref|ZP_06725525.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294806912|ref|ZP_06765737.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|298480088|ref|ZP_06998287.1| DNA-binding protein HU [Bacteroides sp. D22] gi|299144759|ref|ZP_07037827.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|315921386|ref|ZP_07917626.1| DNA-binding protein HU-beta [Bacteroides sp. D2] gi|156110444|gb|EDO12189.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483] gi|229443214|gb|EEO49005.1| DNA-binding protein HU-beta [Bacteroides sp. D1] gi|229451764|gb|EEO57555.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4] gi|262356873|gb|EEZ05963.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|292636179|gb|EFF54666.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292636690|gb|EFF55157.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294445941|gb|EFG14583.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|295085555|emb|CBK67078.1| bacterial nucleoid protein Hbs [Bacteroides xylanisolvens XB1A] gi|298273897|gb|EFI15459.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298515250|gb|EFI39131.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|313695261|gb|EFS32096.1| DNA-binding protein HU-beta [Bacteroides sp. D2] Length = 90 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ E +S+ D+ + + + ++ G+ + + F TF V ++ R G Sbjct: 1 MNKSDLISAMAAEAQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + I ++V FKA + L + Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAV 89 >gi|78064724|ref|YP_367493.1| histone-like DNA-binding protein [Burkholderia sp. 383] gi|107021567|ref|YP_619894.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054] gi|115350111|ref|YP_771950.1| histone family protein DNA-binding protein [Burkholderia ambifaria AMMD] gi|116688089|ref|YP_833712.1| histone family protein DNA-binding protein [Burkholderia cenocepacia HI2424] gi|134294197|ref|YP_001117932.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] gi|161523246|ref|YP_001578258.1| histone family protein DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|167584991|ref|ZP_02377379.1| DNA-binding protein HU-alpha [Burkholderia ubonensis Bu] gi|170699034|ref|ZP_02890091.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|170731439|ref|YP_001763386.1| histone family protein DNA-binding protein [Burkholderia cenocepacia MC0-3] gi|171318830|ref|ZP_02907967.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] gi|172059131|ref|YP_001806783.1| histone family protein DNA-binding protein [Burkholderia ambifaria MC40-6] gi|189348897|ref|YP_001944525.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616] gi|206561866|ref|YP_002232631.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315] gi|221202221|ref|ZP_03575256.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M] gi|221208718|ref|ZP_03581717.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2] gi|221214332|ref|ZP_03587304.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1] gi|238025719|ref|YP_002909950.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1] gi|254246661|ref|ZP_04939982.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184] gi|254251009|ref|ZP_04944327.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158] gi|330815006|ref|YP_004358711.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3] gi|77965469|gb|ABB06849.1| Histone-like DNA-binding protein [Burkholderia sp. 383] gi|105891756|gb|ABF74921.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054] gi|115280099|gb|ABI85616.1| histone family protein DNA-binding protein [Burkholderia ambifaria AMMD] gi|116646178|gb|ABK06819.1| histone family protein DNA-binding protein [Burkholderia cenocepacia HI2424] gi|124871437|gb|EAY63153.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184] gi|124893618|gb|EAY67498.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158] gi|134137354|gb|ABO53097.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] gi|160340675|gb|ABX13761.1| histone family protein DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|169814681|gb|ACA89264.1| histone family protein DNA-binding protein [Burkholderia cenocepacia MC0-3] gi|170136070|gb|EDT04341.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|171095971|gb|EDT40904.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] gi|171991648|gb|ACB62567.1| histone family protein DNA-binding protein [Burkholderia ambifaria MC40-6] gi|189332919|dbj|BAG41989.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616] gi|198037908|emb|CAR53853.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315] gi|221165987|gb|EED98461.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1] gi|221171350|gb|EEE03798.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2] gi|221178015|gb|EEE10427.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M] gi|237874913|gb|ACR27246.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1] gi|325521652|gb|EGD00422.1| DNA-binding protein HU-alpha [Burkholderia sp. TJI49] gi|327367399|gb|AEA58755.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3] Length = 92 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+A+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|302865832|ref|YP_003834469.1| histone family protein DNA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315502377|ref|YP_004081264.1| histone family protein DNA-binding protein [Micromonospora sp. L5] gi|302568691|gb|ADL44893.1| histone family protein DNA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315408996|gb|ADU07113.1| histone family protein DNA-binding protein [Micromonospora sp. L5] Length = 203 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G RK +T + + E+ + +GE + I+ F F + +G+R Sbjct: 1 MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+A + K+ + Sbjct: 60 RNPRTGEAVKVKKTSVPTFRAGAGFKEMV 88 >gi|268609408|ref|ZP_06143135.1| nucleoid protein Hbs [Ruminococcus flavefaciens FD-1] Length = 91 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ SI+ + ++KD+ + I ++ G+ + I+ F TF V+++G + Sbjct: 1 MTKTELINSIADKANCTKKDAASALEATLAAIQEALENGDKVSITGFGTFEVRERGEKTC 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T ++ P + FKA LK+ + Sbjct: 61 INPKTKAKMVCPPCKAPAFKAGRGLKEAV 89 >gi|189485571|ref|YP_001956512.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287530|dbj|BAG14051.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 89 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+VK +S GL++ DS + + L I + I +S +F K + +R GRN Sbjct: 3 KPDIVKQVSDISGLTQGDSNKAIKALVKVIQITLKNNGVISLSGLGSFRAKTRKARQGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T + + I P + V FK ++ L+K I Sbjct: 63 PKTKEVILIPPGKKVSFKPTTTLRKII 89 >gi|325297733|ref|YP_004257650.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324317286|gb|ADY35177.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 97 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 45/85 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L +++ G +D+ + V ++ + + G+ + ++ F TF VK++ R+ N Sbjct: 5 ELTNELARRLGYENQDAAQLVNSMVTMMSEQLQEGKTLVLADFGTFEVKKELERIEVNPL 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T Q + P+ V+ FK ++ K+++ Sbjct: 65 TKQRFLVPPKLVLTFKPAAAFKEKL 89 >gi|145630846|ref|ZP_01786623.1| integration host factor beta-subunit [Haemophilus influenzae R3021] gi|145639202|ref|ZP_01794809.1| integration host factor beta-subunit [Haemophilus influenzae PittII] gi|229845052|ref|ZP_04465188.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae 6P18H1] gi|229846876|ref|ZP_04466983.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae 7P49H1] gi|260582649|ref|ZP_05850438.1| integration host factor, beta subunit [Haemophilus influenzae NT127] gi|144983506|gb|EDJ90974.1| integration host factor beta-subunit [Haemophilus influenzae R3021] gi|145271764|gb|EDK11674.1| integration host factor beta-subunit [Haemophilus influenzae PittII] gi|229810365|gb|EEP46084.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae 7P49H1] gi|229812024|gb|EEP47717.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae 6P18H1] gi|260094321|gb|EEW78220.1| integration host factor, beta subunit [Haemophilus influenzae NT127] gi|309750778|gb|ADO80762.1| Integration host factor, beta-subunit [Haemophilus influenzae R2866] Length = 94 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ K ++K+ L K+ V + I S G+ ++I F +F + + R+ Sbjct: 1 MTKSELIEKLLAKQPTLPAKEIENMVKDILEFISQSLENGDRVEIRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|291614517|ref|YP_003524674.1| integration host factor, subunit beta [Sideroxydans lithotrophicus ES-1] gi|291584629|gb|ADE12287.1| integration host factor, beta subunit [Sideroxydans lithotrophicus ES-1] Length = 95 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+ ++ + L KD+ V + + + + G I+I F +F + + R+ Sbjct: 1 MTRSDLIAKLADRYTQLLGKDAELAVKVILDSMSATLSHGGRIEIRGFGSFALNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ +V++ + V FKA L++R+ Sbjct: 61 GRNPKSGDKVQVPAKYVPHFKAGKELRERV 90 >gi|83592888|ref|YP_426640.1| histone-like DNA-binding protein [Rhodospirillum rubrum ATCC 11170] gi|83575802|gb|ABC22353.1| Histone-like DNA-binding protein [Rhodospirillum rubrum ATCC 11170] Length = 91 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ GLS+ D+ + V +F+ I + + +++ F TF V ++ + G Sbjct: 1 MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + FK LK + Sbjct: 61 RNPRTGETIAIPASKQPKFKPGKGLKDAV 89 >gi|270700801|ref|ZP_06223048.1| integration host factor, beta subunit [Haemophilus influenzae HK1212] gi|319896915|ref|YP_004135110.1| integration host factor beta-subunit [Haemophilus influenzae F3031] gi|329123270|ref|ZP_08251838.1| integration host factor beta subunit [Haemophilus aegyptius ATCC 11116] gi|270315863|gb|EFA27957.1| integration host factor, beta subunit [Haemophilus influenzae HK1212] gi|317432419|emb|CBY80774.1| Integration host factor beta-subunit [Haemophilus influenzae F3031] gi|327471479|gb|EGF16927.1| integration host factor beta subunit [Haemophilus aegyptius ATCC 11116] Length = 94 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S K+ L K+ V + I S +G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|317153197|ref|YP_004121245.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316943448|gb|ADU62499.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 91 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++S++ + ++T+ V + + ++ +RG+ ++I F +F +K G Sbjct: 1 MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V++ +++ F+ LK+ I D Sbjct: 61 RNPKTGSVVQVRSKKLPFFRPGKELKEFIND 91 >gi|94986874|ref|YP_594807.1| nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] gi|94731123|emb|CAJ54485.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] Length = 96 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ +T+ D++ +I ++ ++ D V TL + + + + IS F F K Sbjct: 1 MNNVLTKVDIIDAIYEKINNNKADIKNIVETLLSIMKQAIKTDNTLLISGFGKFEAYSKH 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN QT++ + + R+V+VF+ S Sbjct: 61 TRKGRNPQTDEAITLPSRKVIVFRLS 86 >gi|160872885|ref|ZP_02063017.1| DNA-binding protein HU-beta [Rickettsiella grylli] gi|159121684|gb|EDP47022.1| DNA-binding protein HU-beta [Rickettsiella grylli] Length = 92 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ I + + + + + + + + I + GE + + F V+ + +R G Sbjct: 1 MNKSDLIDVIGEAAQIPKNVAGKTLEKILDSITKALCEGEDVSLVGFGALCVRHRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I VV FKA +LK Sbjct: 61 RNPKTGESIPIKASNVVAFKAGKVLK 86 >gi|332638320|ref|ZP_08417183.1| DNA-binding protein hu [Weissella cibaria KACC 11862] Length = 92 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 40/64 (62%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++++L+ ++ + G ++ ++T+ V L + I D +GE + + F TF V+++ +R GR Sbjct: 3 SKTELIDLVAAKTGQAKSETTKTVNALLDVIKDQLAQGEKVALVGFGTFEVRERAARKGR 62 Query: 66 NLQT 69 N QT Sbjct: 63 NPQT 66 >gi|307244028|ref|ZP_07526147.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678] gi|306492552|gb|EFM64586.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678] Length = 93 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +S++ L++K+S + + ++ V G+ +++ F TF +++ +R G Sbjct: 1 MNKAELVAKMSEKSNLTKKESELALNAFMKVVEETLVAGDKVQLVGFGTFETRERAARSG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + +EV +I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIEIPASKAPVFKAGKGLKELV 90 >gi|154492585|ref|ZP_02032211.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC 43184] gi|154087810|gb|EDN86855.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC 43184] Length = 94 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+ L+K +++ + + +F+ + I + GE + I F + R GR Sbjct: 3 TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 NL+T +E KI R V FKAS IL +++ Sbjct: 63 NLRTGEECKIRARTSVKFKASEILIQKL 90 >gi|224826390|ref|ZP_03699492.1| integration host factor, beta subunit [Lutiella nitroferrum 2002] gi|224601491|gb|EEG07672.1| integration host factor, beta subunit [Lutiella nitroferrum 2002] Length = 104 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+S+L+ +++ L KD+ V T+ + + S G+ I+I F +F + + Sbjct: 1 MTKSELIARLAEHLAERNSQLVYKDAELAVKTILDAMAGSLATGQRIEIRGFGSFDLNYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN ++ V + + V FKA L++R+ Sbjct: 61 PPRVGRNPKSGSSVSVPEKFVPHFKAGKELRERV 94 >gi|326386334|ref|ZP_08207958.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209559|gb|EGD60352.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDS-TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++K+ R D R V F+EI G +++ F F +++ +R Sbjct: 1 MIRSELLQVLAKQSPDMRSDEIERVVDVFFDEIGKRLAEGGRVELRGFGAFSTRERDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + +RV FK ++ R+ Sbjct: 61 GRNPRTGEAVDVPGKRVPYFKPGKEMRVRL 90 >gi|32491258|ref|NP_871512.1| hypothetical protein WGLp509 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166465|dbj|BAC24655.1| hupA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 90 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + + I +S G A+++ F TF + ++ +R G Sbjct: 1 MNKTQLIDVIANKAELSKIKARAALESTLDAITNSLKEGNAVQLIGFGTFKINRRNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAATNVPTFVSGKALKAAV 89 >gi|302877955|ref|YP_003846519.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302580744|gb|ADL54755.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 97 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ +F L+ D V T+ +E+ + RG I+I F +F + + R Sbjct: 1 MTRSELIVQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FK L++R+ Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90 >gi|237748740|ref|ZP_04579220.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13] gi|229380102|gb|EEO30193.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13] Length = 90 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ + R + + + + S +++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKSADISKAAAARSLDAVIDAVTTSLKNNDSVTLVGFGTFSVGERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V F+A +LK Sbjct: 61 RNPRTGEVIKIKSAKVPKFRAGKLLK 86 >gi|152966755|ref|YP_001362539.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151361272|gb|ABS04275.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 187 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK++T V + I + +G+ I IS F TF + + +R G Sbjct: 1 MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90 >gi|218129554|ref|ZP_03458358.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697] gi|217988284|gb|EEC54607.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697] Length = 106 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K+++ GL D+++ ++ N + D RGE + S F V++ +R G Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM-DDMRGRKCNKDD 106 RN T ++I R+VV F L++ ++ + GR+ D Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAVIKKGIHGRRARCTD 103 >gi|90413395|ref|ZP_01221388.1| putative DNA-binding protein HU-alpha [Photobacterium profundum 3TCK] gi|90325637|gb|EAS42106.1| putative DNA-binding protein HU-alpha [Photobacterium profundum 3TCK] Length = 90 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKLALESTLEGITGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT QE++I V F + LK Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALK 86 >gi|16081263|ref|NP_393571.1| DNA-binding protein HTa [Thermoplasma acidophilum DSM 1728] gi|11467945|sp|P02345|DBH_THEAC RecName: Full=DNA-binding protein HTa gi|10639239|emb|CAC11241.1| DNA-binding protein HTa [Thermoplasma acidophilum] Length = 90 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 47/83 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K ++K+ ++K + + + +EI A G+ I ++ F F + +G R RN Sbjct: 5 SELSKEVAKKANTTQKVARTVIKSFLDEIVSQANGGQKINLAGFGIFERRTQGPRKARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT + +++ ++ VF+ASS +K Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87 >gi|260904564|ref|ZP_05912886.1| HU_IHF family transcriptional regulator [Brevibacterium linens BL2] Length = 95 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 RS+LV +++ GL++K + + +F+ D +GE + I + + ++ +R GRN Sbjct: 5 RSELVAEVAENSGLTQKQVSDVLDGVFDVFSDVVGKGEKLTIPGWLSVERTERAARKGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT +E++I V A S LK Sbjct: 65 PQTGEEIQIKAGYSVKLSAGSKLK 88 >gi|303258162|ref|ZP_07344170.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|302859181|gb|EFL82264.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] Length = 92 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++E G S+ D + L ++ + G+ I + F TF ++ +R G Sbjct: 1 MNKTELVAAVAEETGKSKADVKEILEALIAQVVKTVKAGDEIALIGFGTFKSAERAARTG 60 Query: 65 RNLQTNQEVKI 75 RN T +E+KI Sbjct: 61 RNPATGKEIKI 71 >gi|260219735|emb|CBA26580.1| DNA-binding protein HU-beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 90 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86 >gi|254469567|ref|ZP_05082972.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062] gi|211961402|gb|EEA96597.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062] Length = 91 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F I ++ G+ ++I F F V + + G Sbjct: 1 MNKNDLIGAVAEKTGLTKAQAGEAVEASFEAITETLKSGDEVRIIGFGNFSVSARAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89 >gi|119953028|ref|YP_945237.1| DNA-binding protein HbbU [Borrelia turicatae 91E135] gi|119861799|gb|AAX17567.1| DNA-binding protein HbbU [Borrelia turicatae 91E135] Length = 108 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K V F E+ +S I+ SF TF + K+ Sbjct: 9 VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG + RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104 >gi|251771160|gb|EES51742.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 98 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K LS+KD V I S +GE + I F TF + +R G Sbjct: 1 MNKTELIEKVAKSSKLSKKDVHAVVDGFLKSIEASMKKGEKVTIVGFGTFGTVSRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI + F L++ + Sbjct: 61 RNPKTGKEIKIAAKTAPKFSPGKALRESV 89 >gi|75487893|sp|Q9AKK7|HLP_RICMO RecName: Full=Histone-like DNA-binding protein gi|13235521|emb|CAC33647.1| Integration host factor alpha-subunit [Rickettsia montanensis] Length = 95 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F+ I + A + + + + +F +F VKQK R Sbjct: 2 TITKEKIAAMLSSKLGFSNNLCEEIVHTVFSNILEIA-KEQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I R Sbjct: 61 GINFHTKAPVIIESKKNLRFVPSSKLKALINGSTR 95 >gi|325300776|ref|YP_004260692.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324320329|gb|ADY38219.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 176 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+ + G+ +KD + +L E+ +S +G+ I + F +F +K + + Sbjct: 1 MTKAELVNIIAIKTGIDKKDVMAIMESLMAEVKNSLGKGKHIYLRGFGSFIIKHRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N V + + FK + Sbjct: 61 RNISQNTTVMVPAHNIPAFKPA 82 >gi|238785563|ref|ZP_04629544.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970] gi|238794946|ref|ZP_04638543.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909] gi|238798678|ref|ZP_04642152.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969] gi|238713548|gb|EEQ05579.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970] gi|238717496|gb|EEQ09338.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969] gi|238725704|gb|EEQ17261.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909] Length = 91 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+ +++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSV 89 >gi|307942066|ref|ZP_07657417.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4] gi|307774352|gb|EFO33562.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4] Length = 91 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F + ++ G+ ++I F F V + + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDATFEAVTETLKAGDEVRIIGFGNFSVSARAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89 >gi|332186781|ref|ZP_08388523.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] gi|332013114|gb|EGI55177.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ GL R D+ + V +F I + +G+ +++ F TF V ++ + G Sbjct: 1 MNKQELIATVADSSGLVRGDAVKAVDAVFEAITAALKKGDEVRLVGFGTFSVSKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I FK +LK + Sbjct: 61 RNPRTGEPMTIKASSQPKFKPGKLLKDSV 89 >gi|228473931|ref|ZP_04058672.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] gi|228274445|gb|EEK13286.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] Length = 106 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + + V I DS +G+ + + F +F VK + + G Sbjct: 1 MTKAEIVAKISEKLGIEKTEVQNVVEHFMEGIKDSLEKGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + + Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVF 85 >gi|158321657|ref|YP_001514164.1| histone family protein DNA-binding protein [Alkaliphilus oremlandii OhILAs] gi|158141856|gb|ABW20168.1| histone family protein DNA-binding protein [Alkaliphilus oremlandii OhILAs] Length = 92 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKAELVAKMAEKAQLTKKDTELALNSFMETVEEALATGDKVQLVGFGTFEVRERKPRQG 60 Query: 65 RNLQTNQEV-KIDPRRVVVFKASSILKKRI 93 RN + ++V I + VFKA LK+++ Sbjct: 61 RNPRNPEQVIDIPASKAPVFKAGKTLKEQM 90 >gi|71483084|gb|AAZ32517.1| nucleoid DNA binding protein [uncultured euryarchaeote Alv-FOS4] Length = 89 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 49/83 (59%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +++ K ++K+ GLS+K + + E+ + +GE+++I+ F + + +R RN Sbjct: 5 TEISKPVAKKTGLSQKKAREVINAFLEEVLEQVNKGESVRIAGLGIFERRVQKARKVRNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 +T + +K+ ++ +VFK S+ +K Sbjct: 65 RTGKMMKVGEKKKLVFKPSANIK 87 >gi|329960404|ref|ZP_08298814.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328532764|gb|EGF59549.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 93 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ ISK+ G+ R + V + S G+ + + F +F VK++ + G Sbjct: 1 MTKADLVQEISKQTGIDRDEVLMIVEAFMETVKCSLSMGKEVYLRGFGSFIVKRRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N + I + FK S +I Sbjct: 61 RNIGQNTTLIIPAHDIPAFKPSKEFSNKI 89 >gi|237807496|ref|YP_002891936.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] gi|237499757|gb|ACQ92350.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 44/83 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+ +++ E ++ + + L + V GE + I TF + K +R+GRN Sbjct: 3 KAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSIL 89 QT + V+I ++ V FKA+ L Sbjct: 63 PQTGETVEIAAKKTVKFKAAKAL 85 >gi|239814795|ref|YP_002943705.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|319792644|ref|YP_004154284.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] gi|239801372|gb|ACS18439.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|315595107|gb|ADU36173.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + + I + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKNADISKAAATRALESTIGAIRTTLKKGGSVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI ++ F+ LK Sbjct: 61 RNPRTGDAIKIKAAKIPKFRPGKALK 86 >gi|114048970|ref|YP_739520.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|113890412|gb|ABI44463.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSIRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I V FKA L+ Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLR 86 >gi|126661201|ref|ZP_01732276.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|126617496|gb|EAZ88290.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LVK+I+ E G + T+ + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT + + I + F A I K+++ Sbjct: 61 KNPQTGEPLTIPATTIPAFSAGKIFKEKV 89 >gi|58176578|pdb|1RIY|A Chain A, Hu Mutant V42i From Thermotoga Maritima Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE I+I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89 >gi|14194634|sp|Q9RZ89|DBH_DEIRA RecName: Full=DNA-binding protein HU Length = 122 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ ++ + GL++K S ++++ + + G+++ + T VK+ +R G Sbjct: 34 VAKTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTG 93 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T+++++I + V FK +S LK + Sbjct: 94 VRPGTSEKIQIPAGKKVAFKVASTLKGNL 122 >gi|119475179|ref|ZP_01615532.1| probable DNA-binding protein [marine gamma proteobacterium HTCC2143] gi|119451382|gb|EAW32615.1| probable DNA-binding protein [marine gamma proteobacterium HTCC2143] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 45/87 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDL I+ + + + + ++ + +EI ++ R E++ + F TF + + +R G+N Sbjct: 3 KSDLATEIADKADIPADKAQQVLSAILDEITNALSRKESVSLIGFGTFEPRHRNARAGKN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT ++I V FK LK+ + Sbjct: 63 PQTGVALQIAASNTVGFKPGKALKEAV 89 >gi|269120171|ref|YP_003308348.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] gi|268614049|gb|ACZ08417.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 41/71 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + +++ +K G ++K S V + + V+G ++ + TF V+++ +R G Sbjct: 1 MSKKEFIEAYAKSTGETKKRSEELVNAFLETVEKTLVKGNPVQFVGWGTFGVQKRAARKG 60 Query: 65 RNLQTNQEVKI 75 RN QT +E+KI Sbjct: 61 RNPQTGKEIKI 71 >gi|152990572|ref|YP_001356294.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2] gi|151422433|dbj|BAF69937.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 47/87 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ V+ ++++ GLS+KD+ + + I D+ G+ + F TF Q+ +R + Sbjct: 3 KAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREAKV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T++ VK+ RVV FK LK+ + Sbjct: 63 PGTDRVVKVPATRVVKFKVGKKLKEAV 89 >gi|15807733|ref|NP_285388.1| DNA-binding protein HB [Deinococcus radiodurans R1] gi|6460544|gb|AAF12250.1|AE001862_76 DNA-binding protein HB [Deinococcus radiodurans R1] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ ++ + GL++K S ++++ + + G+++ + T VK+ +R G Sbjct: 49 VAKTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTG 108 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T+++++I + V FK +S LK + Sbjct: 109 VRPGTSEKIQIPAGKKVAFKVASTLKGNL 137 >gi|152965970|ref|YP_001361754.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151360487|gb|ABS03490.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 188 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK++T V + I + +G+ I IS F TF + + +R G Sbjct: 1 MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90 >gi|261868287|ref|YP_003256209.1| integration host factor subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390072|ref|ZP_06634406.1| integration host factor, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413619|gb|ACX82990.1| integration host factor, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950606|gb|EFE00725.1| integration host factor, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 95 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + K + K V + ++ GE I++ F +F + + R+ Sbjct: 1 MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLEHGERIEVRGFGSFSLHCRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90 >gi|262203103|ref|YP_003274311.1| histone family protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262086450|gb|ACY22418.1| histone family protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 193 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++K+ RK +T V + + I + +GE++ I+ F F +++ RV Sbjct: 1 MNKAELIDELTKKLDADRKTATEAVELIVDTIVRAVNKGESVTITGFGVFEKRRRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ V F+ + K Sbjct: 61 RNPRTGETVKVRATSVPAFRPGAQFK 86 >gi|148259931|ref|YP_001234058.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|326403115|ref|YP_004283196.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] gi|146401612|gb|ABQ30139.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|325049976|dbj|BAJ80314.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] Length = 87 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 45/85 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLV ++++ LS+ +T V +F I ++ R E +++ F TF ++ + GRN + Sbjct: 2 DLVADVAEKTDLSKAKATEVVDAVFAAIEEALKRKEEVRLVGFGTFGTAERKAATGRNPR 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T +E++I V FK LK + Sbjct: 62 TGEEIQIAASTSVRFKPGKSLKDAV 86 >gi|313886631|ref|ZP_07820343.1| DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332299532|ref|YP_004441453.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] gi|312923927|gb|EFR34724.1| DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332176595|gb|AEE12285.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K+++ + L++KD+ + I + +GE + + F +F+V ++ +R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAMVETIHEEMKKGERLTLVGFGSFYVSERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N Q+ + ++I + + FK S+ L Sbjct: 61 INPQSGKTIQIKASKSIKFKPSTAL 85 >gi|257125480|ref|YP_003163594.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] gi|257049419|gb|ACV38603.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] Length = 93 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 43/71 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + V + +K G ++K + V + + +S ++G++++ + TF VK++ +R G Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60 Query: 65 RNLQTNQEVKI 75 N QT +E++I Sbjct: 61 INPQTKEEIQI 71 >gi|327250473|gb|EGE62183.1| DNA-binding protein HU-alpha [Escherichia coli STEC_7v] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I+++ LS+ + + + I +S G+A+++ F TF V + R GRN QT +E+ Sbjct: 10 IAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEI 69 Query: 74 KIDPRRVVVFKASSILK 90 KI V F + LK Sbjct: 70 KIAAANVPAFVSGKALK 86 >gi|255011482|ref|ZP_05283608.1| putative DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313149304|ref|ZP_07811497.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313138071|gb|EFR55431.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 95 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 46/82 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS+E G+ RK + + D+ RG ++ + F TF +K++ ++ Sbjct: 1 MTKADIINRISEEQGIDRKTVALVIEGFMKCVKDALGRGRSVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 +N+Q + + I R+V FK S Sbjct: 61 QNIQQHITICIPTRKVPHFKPS 82 >gi|3913404|sp|Q45722|DBH_BORTU RecName: Full=DNA-binding protein HBbu gi|1280607|gb|AAC73104.1| histone-like protein HBbu [Borrelia turicatae] Length = 108 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K V F E+ +S I+ SF TF + K+ Sbjct: 9 VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG + RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104 >gi|302878375|ref|YP_003846939.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302581164|gb|ADL55175.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 93 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+ +++ L KD+ V + + + + RG ++I F +F + + R Sbjct: 1 MTRSDLIARLAELHPQLLAKDAEMAVKVILDALSSTLSRGGRVEIRGFGSFGLNYRPPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V + + V FKA L++R+ Sbjct: 61 GRNPKTGDKVGVPAKYVPHFKAGKDLRERV 90 >gi|237716500|ref|ZP_04546981.1| DNA-binding protein HU [Bacteroides sp. D1] gi|237720681|ref|ZP_04551162.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|294645092|ref|ZP_06722818.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|229444147|gb|EEO49938.1| DNA-binding protein HU [Bacteroides sp. D1] gi|229449516|gb|EEO55307.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|292639598|gb|EFF57890.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/84 (22%), Positives = 43/84 (51%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +++ G + KD++ + +L + + G I + F +F VK+K R+ N Sbjct: 5 EFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERISINPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 + Q + + P+ V+ ++ S+ LK + Sbjct: 65 SKQRMLVPPKLVLSYRPSNTLKDK 88 >gi|213021940|ref|ZP_03336387.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 85 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 42/84 (50%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ I+ + LS+ + + + I +S G+A+++ F TF V + R GRN QT Sbjct: 1 MIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +E+KI V F + LK + Sbjct: 61 GKEIKIAAANVPAFVSGKALKDAV 84 >gi|330813819|ref|YP_004358058.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486914|gb|AEA81319.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 93 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ IS LS+ D+ R + N I D+ + +KI+ F T+ V ++ +R G Sbjct: 1 MNKKQLIAKISASMNLSKADAERTFDGITNIILDALKNDDNVKIAGFGTYKVAKRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T + ++I + V F + LK+ Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALKE 87 >gi|212692210|ref|ZP_03300338.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855] gi|212665087|gb|EEB25659.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D + +++ E GLS+ D+ + V + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKADFISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + I ++V FK + L I Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAI 89 >gi|170078570|ref|YP_001735208.1| DNA-binding protein HU [Synechococcus sp. PCC 7002] gi|169886239|gb|ACA99952.1| DNA-binding protein HU [Synechococcus sp. PCC 7002] Length = 92 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++++ G+S+K + ++ I ++ G+ + + F +F + + +R G Sbjct: 1 MNKGELVDLVAEKAGISKKQADSVISATVEAIMETVANGDKVTLVGFGSFEPRHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN++++I V F A K+ + Sbjct: 61 RNPKTNEKMQIPATTVPAFSAGKQFKEMV 89 >gi|310780405|ref|YP_003968737.1| histone family protein DNA-binding protein [Ilyobacter polytropus DSM 2926] gi|309749728|gb|ADO84389.1| histone family protein DNA-binding protein [Ilyobacter polytropus DSM 2926] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 40/73 (54%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ D+ R + + D G+ + + F V ++ +R+GRN +T +E+KI+ ++V Sbjct: 18 SKADAERKLDAFLTTVEDVLNDGDDVNFIGWGKFEVAERAARLGRNPKTGEEIKIEAKKV 77 Query: 81 VVFKASSILKKRI 93 V FKA L ++ Sbjct: 78 VKFKAGKKLNDKV 90 >gi|329902901|ref|ZP_08273299.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480] gi|327548565|gb|EGF33226.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + L + + R + ++ + + + V G+++++ F F + R G Sbjct: 1 MNKTELIDAIAADCDLPKTVAQRALESILSNVIQAVVNGDSVQLIGFGAFASGSRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI + V F A K + Sbjct: 61 RNPRTGEEIKIAAAKTVKFSAGKAFKDAV 89 >gi|313886994|ref|ZP_07820694.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332299884|ref|YP_004441805.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] gi|312923520|gb|EFR34329.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332176947|gb|AEE12637.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 46/82 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++VKSI+ GL R++ + V + + ++ +G+ + + F +F VK++ + Sbjct: 1 MTKAEVVKSIADTTGLDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ + + R+V FK S Sbjct: 61 RNISKQTTIIVPARKVPTFKPS 82 >gi|260170244|ref|ZP_05756656.1| DNA-binding protein HU [Bacteroides sp. D2] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 43/85 (50%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +++ G + KD++ + +L + + G + I F +F VK+K R+ N Sbjct: 5 EFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERISINPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 + Q + + P+ V+ ++ S+ LK + Sbjct: 65 SKQRMLVPPKLVLSYRPSNTLKDKF 89 >gi|148274118|ref|YP_001223679.1| putative DNA-binding protein HU [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783357|ref|YP_001711691.1| DNA-binding protein HU [Clavibacter michiganensis subsp. sepedonicus] gi|147832048|emb|CAN03021.1| putative DNA-binding protein Hu [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157927|emb|CAQ03137.1| DNA-binding protein HU [Clavibacter michiganensis subsp. sepedonicus] Length = 95 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 45/91 (49%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K++ R++LV +++ E G S+ + LF+ + + G + I + F + +R Sbjct: 4 KSLNRTELVAAVAAESGQSQAAVNGVLDALFSTVATNVADGVKVTIPGWVAFEQTARAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + ++I + V A S LK + Sbjct: 64 TGRNPQTGEPLEIKASKGVKVSAGSKLKAAV 94 >gi|332666093|ref|YP_004448881.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332334907|gb|AEE52008.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 + + DL+ I++ +++ +T + + + I + ++G+ + + F TF V ++ +R Sbjct: 1 MNKGDLINKIAEGAKITKAQATDALNAVLDSIA-AELKGDGKVTLIGFGTFSVSKRDARS 59 Query: 64 GRNLQTNQEVKIDPRRVVVFK 84 GRN QT Q + ID ++VV FK Sbjct: 60 GRNPQTGQTITIDAKKVVKFK 80 >gi|312116028|ref|YP_004013624.1| histone family protein DNA-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311221157|gb|ADP72525.1| histone family protein DNA-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 126 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T L +++ GLS+K + ++ + I +G I+I+ T V+++ +R G Sbjct: 38 VTLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTG 97 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I + V F+A+ L + I Sbjct: 98 RNPATGEAIEIKASKKVAFRAAKDLSESI 126 >gi|118260|sp|P28080|DBHA_VIBPR RecName: Full=DNA-binding protein HU-alpha gi|141878|gb|AAA21939.1| histone-like protein [Vibrio proteolyticus] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK + Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDAV 89 >gi|167560912|ref|ZP_02353828.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis EO147] gi|167571802|ref|ZP_02364676.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis C6786] Length = 92 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I S +G+++++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKSVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|29348239|ref|NP_811742.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron VPI-5482] gi|253569395|ref|ZP_04846805.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6] gi|298386068|ref|ZP_06995625.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|29340142|gb|AAO77936.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron VPI-5482] gi|251841414|gb|EES69495.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6] gi|298261296|gb|EFI04163.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E +S+ D+ + + + + ++ G+ + + F TF V ++ +R G Sbjct: 1 MNKSELISAMAAEAQMSKADAKKALDAFISSVTNAMKAGDKVALVGFGTFSVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + I ++V FKA + L + Sbjct: 61 INPSTKAAITIPAKKVAKFKAGAELSAAV 89 >gi|328541581|ref|YP_004301691.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1] gi|326415720|gb|ADZ72782.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1] Length = 92 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ + V ++FN+I ++A G I SF F VK R GR Sbjct: 3 TTNEIADKIASEQNLTKTQAKAIVESVFNQIAEAAKAGAETSIPSFGKFKVKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 N T +KI + + F K + D + G Sbjct: 63 NPATGATIKIAASKKLTFTPG----KAVKDALNG 92 >gi|312796427|ref|YP_004029349.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] gi|312168202|emb|CBW75205.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + L + + ++ +G ++ + F TF + + +R G Sbjct: 1 MNKTELIDHIAEQADISKAAAGRALDALIDGVKETLKKGGSVTLVGFGTFALGTRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI+ +V F+A LK Sbjct: 61 RNPRTGAAIKIEAAKVPKFRAGKALK 86 >gi|22124414|ref|NP_667837.1| transcriptional regulator HU subunit alpha [Yersinia pestis KIM 10] gi|45442848|ref|NP_994387.1| transcriptional regulator HU subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|51594652|ref|YP_068843.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|108809595|ref|YP_653511.1| transcriptional regulator HU subunit alpha [Yersinia pestis Antiqua] gi|108810400|ref|YP_646167.1| transcriptional regulator HU subunit alpha [Yersinia pestis Nepal516] gi|145600976|ref|YP_001165052.1| transcriptional regulator HU subunit alpha [Yersinia pestis Pestoides F] gi|153947801|ref|YP_001402797.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|153997235|ref|ZP_02022342.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125] gi|162418414|ref|YP_001605067.1| transcriptional regulator HU subunit alpha [Yersinia pestis Angola] gi|165928324|ref|ZP_02224156.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. F1991016] gi|165938152|ref|ZP_02226711.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. IP275] gi|166012045|ref|ZP_02232943.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. E1979001] gi|166214410|ref|ZP_02240445.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. B42003004] gi|167402421|ref|ZP_02307881.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422943|ref|ZP_02314696.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426821|ref|ZP_02318574.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022612|ref|YP_001719117.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis YPIII] gi|186893654|ref|YP_001870766.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|218930736|ref|YP_002348611.1| transcriptional regulator HU subunit alpha [Yersinia pestis CO92] gi|229837478|ref|ZP_04457640.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Pestoides A] gi|229839413|ref|ZP_04459572.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899975|ref|ZP_04515115.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229900576|ref|ZP_04515702.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Nepal516] gi|270488931|ref|ZP_06206005.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|21957198|gb|AAM84088.1|AE013651_1 DNA-binding protein HU-alpha (HU-2) [Yersinia pestis KIM 10] gi|45437714|gb|AAS63264.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Microtus str. 91001] gi|51587934|emb|CAH19537.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP 32953] gi|108774048|gb|ABG16567.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis Nepal516] gi|108781508|gb|ABG15566.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis Antiqua] gi|115349347|emb|CAL22318.1| DNA-binding protein HU-alpha [Yersinia pestis CO92] gi|145212672|gb|ABP42079.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis Pestoides F] gi|149289343|gb|EDM39422.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125] gi|152959296|gb|ABS46757.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP 31758] gi|162351229|gb|ABX85177.1| DNA-binding protein HU-alpha [Yersinia pestis Angola] gi|165913813|gb|EDR32431.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. IP275] gi|165919663|gb|EDR36996.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. F1991016] gi|165989040|gb|EDR41341.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. E1979001] gi|166204414|gb|EDR48894.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. B42003004] gi|166957154|gb|EDR55175.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048201|gb|EDR59609.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054203|gb|EDR64028.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749146|gb|ACA66664.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis YPIII] gi|186696680|gb|ACC87309.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis PB1/+] gi|229682396|gb|EEO78486.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Nepal516] gi|229686960|gb|EEO79036.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695779|gb|EEO85826.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704166|gb|EEO91177.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Pestoides A] gi|270337435|gb|EFA48212.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|320013669|gb|ADV97240.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+ +++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|535709|gb|AAA65948.1| HU protein [Pseudomonas aeruginosa] Length = 89 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK+ +R G Sbjct: 1 MNKSELIDAIAASADIPKDVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKEPAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI ++ FKA LK + Sbjct: 61 RNPQTGKPIKIA-AKIPGFKAGKALKDAV 88 >gi|332711135|ref|ZP_08431069.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L] gi|332350117|gb|EGJ29723.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L] Length = 94 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDKVAEKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++++I +V F A + K+R+ Sbjct: 61 RNPKTGEKMEIPATKVPAFSAGKVFKERV 89 >gi|158423235|ref|YP_001524527.1| histone-like DNA-binding protein [Azorhizobium caulinodans ORS 571] gi|158330124|dbj|BAF87609.1| histone-like bacterial DNA-binding protein [Azorhizobium caulinodans ORS 571] Length = 92 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ ++++E L++ + V F+ I + GE +K+ F +F V + +R GR Sbjct: 3 TKNELIAAVAEEAKLTKAAAAAAVDATFDIIAKALKDGEEVKLIGFGSFSVVTRAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + VKI + F LK+ + D Sbjct: 63 NPRTGKPVKIAASKAPKFTPGKGLKEAVND 92 >gi|325274256|ref|ZP_08140370.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] gi|324100618|gb|EGB98350.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] Length = 92 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK + LV ++++ GL++ +++ V T+ + I + V +I + F F V + Sbjct: 1 MSKAV----LVGLVAEKHGLTKAEASEIVNTVLSGIQSALVSQGSISLVGFGVFSVVDRA 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN T + V + R+ V F LK+ + Sbjct: 57 ARNGRNPNTGEPVTVAARKAVRFTPGEPLKRAV 89 >gi|319763571|ref|YP_004127508.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|330824228|ref|YP_004387531.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|317118132|gb|ADV00621.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|329309600|gb|AEB84015.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ + +S+ +TR + + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKSELIEHIASQADISKAAATRALESTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALK 86 >gi|62195080|ref|YP_220427.1| hypothetical protein p49879_2p18 [Leptospirillum ferrooxidans] gi|61105596|gb|AAX38515.1| ORF98 [Leptospirillum ferrooxidans] Length = 98 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+S LS+KD + I S +GE + + F TF +K +R G Sbjct: 1 MNKTELVASVSDSSNLSKKDVQAVLDGFLAAIEHSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I R F A L+ I Sbjct: 61 RNPRTGEALEIPARTSPKFSAGKSLRDAI 89 >gi|282881455|ref|ZP_06290129.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] gi|281304681|gb|EFA96767.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] Length = 95 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +++ G +++ + V L + + GEA+ I SF TF +K++ R+ Sbjct: 1 MNNKEFIAELAQRCGYTQEKTQNLVNILVEAMASNFDEGEAVSIPSFGTFEIKKRLERIL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + + + P+ V+ F+ + ++K+++ Sbjct: 61 VNPSTGKRMMVPPKLVLNFRPTPLVKEQL 89 >gi|255693886|ref|ZP_05417561.1| HimA protein [Bacteroides finegoldii DSM 17565] gi|260620291|gb|EEX43162.1| HimA protein [Bacteroides finegoldii DSM 17565] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/84 (22%), Positives = 42/84 (50%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + +++ G + KD++ + +L + G I + F +F VK+K R+ N Sbjct: 5 EFTSELAERLGYTIKDTSELINSLLASMTQELEEGNMIAVQGFGSFEVKKKAERISINPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 + Q + + P+ V+ ++ S+ LK + Sbjct: 65 SKQRMLVPPKLVLSYRPSNTLKDK 88 >gi|172055154|ref|YP_001806481.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] gi|171701435|gb|ACB54415.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] Length = 92 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LVK+I+ E G + T+ + I ++ G+ I + F TF + + R G Sbjct: 1 MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKITLVGFGTFEPRDRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT + + I + F AS K+++ Sbjct: 61 KNPQTGEPLTIPATTIPAFSASKAFKEKV 89 >gi|301064005|ref|ZP_07204470.1| integration host factor subunit beta [delta proteobacterium NaphS2] gi|300441916|gb|EFK06216.1| integration host factor subunit beta [delta proteobacterium NaphS2] Length = 92 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++KE L + + V T+F E+ + E ++I +F VK G Sbjct: 1 MNKSELIEALAKEKDLPLRKAEEVVNTVFGEMEKALTDEERVEIRGLGSFKVKHYDGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+R+ Sbjct: 61 RNPKTGEIINVGRKKLPFFKVGKELKERV 89 >gi|170698163|ref|ZP_02889242.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|170136928|gb|EDT05177.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] Length = 91 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 41/89 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++S G + + + + + + RGEA++I F +F + R G Sbjct: 1 MNKNELIDAVSATTGAGKAHTETAIDAILQTVTQALARGEAVQIVGFGSFSTGARAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + I + V F A K + Sbjct: 61 RNPATGEAITIAAAKTVKFAAGKAFKDAV 89 >gi|332292782|ref|YP_004431391.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170868|gb|AEE20123.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ G+++ + + + + ++ + G + + F ++ V ++ +R G Sbjct: 1 MNKSELIDGMAEHAGITKAAAKKALESFLGDVEKTLKDGGRVSLVGFGSWSVSKRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI + VV FKA S L Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSEL 85 >gi|13540991|ref|NP_110679.1| nucleoid DNA-binding protein (HB-related) [Thermoplasma volcanium GSS1] gi|14324375|dbj|BAB59303.1| DNA-binding protein HU [Thermoplasma volcanium GSS1] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 47/83 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K ++K+ ++K + + + +EI A G+ I ++ F F + +G R RN Sbjct: 5 SELSKDVAKKANTTQKVARTVIKSFLDEIVAQANGGQKINLAGFGIFERRTQGPRKARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT + +++ ++ VF+ASS +K Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87 >gi|326336370|ref|ZP_08202541.1| integration host factor subunit alpha [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691544|gb|EGD33512.1| integration host factor subunit alpha [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 105 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + + V EI S +G+ + + F +F VK + + G Sbjct: 1 MTKAEIVAKISEKLGIEKTEVQNTVEHFMEEIKASLEKGDNVYLRGFGSFIVKARAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + + Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVF 85 >gi|332529106|ref|ZP_08405070.1| histone family protein DNA-binding protein [Hylemonella gracilis ATCC 19624] gi|332041329|gb|EGI77691.1| histone family protein DNA-binding protein [Hylemonella gracilis ATCC 19624] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + ++ + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKNADISKAAATRALESVIGAVKTTLKKGGSVSLVGFGTFAVTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI ++ F+ LK Sbjct: 61 RNPRTGDTIKIKAAKLPKFRPGKALK 86 >gi|159036797|ref|YP_001536050.1| histone family protein DNA-binding protein [Salinispora arenicola CNS-205] gi|157915632|gb|ABV97059.1| histone family protein DNA-binding protein [Salinispora arenicola CNS-205] Length = 209 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++S++ G RK +T + + E+ + +GE + I+ F F + +G+R Sbjct: 1 MNKAELIESLAVRLG-DRKTATAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+ + K+ + Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 88 >gi|83858753|ref|ZP_00952275.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853576|gb|EAP91428.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii HTCC2633] Length = 88 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L K+I+ + G+++ ++ + + I +A ++++++ F TFH K + +R Sbjct: 1 MNKSELAKAIADKAGITKAQASDAIDAFADAIVGAAKSNDSVQLAGFGTFHAKHREAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +++ + + F+ +S LK Sbjct: 61 RNPRTGEKMMSKAKTQLAFRPASALK 86 >gi|227875778|ref|ZP_03993906.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243] gi|306819051|ref|ZP_07452768.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239] gi|227843720|gb|EEJ53901.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243] gi|304648244|gb|EFM45552.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239] Length = 93 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I+K LS+ ++ ++ + + +S +GE +K++ + +R Sbjct: 2 SVNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGFGVKISAGSTLKKAV 91 >gi|325288078|ref|YP_004263868.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] gi|324323532|gb|ADY30997.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVTRREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT + +KI + VV FKA + L Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGTEL 85 >gi|288819045|ref|YP_003433393.1| integration host factor beta subunit [Hydrogenobacter thermophilus TK-6] gi|288788445|dbj|BAI70192.1| integration host factor beta subunit [Hydrogenobacter thermophilus TK-6] gi|308752628|gb|ADO46111.1| histone family protein DNA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 98 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +S++ ISKE+ + + + V +F+ I ++I F F ++++G R Sbjct: 4 KKVKKSEIASKISKEYQIPLELAKSLVEGVFSWIVQKTAEDGRVEIRGFGVFKLRRRGGR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T E+ ++ R ++ FK S L KR+ Sbjct: 64 FTKNPKTGIEMYVEERYLMSFKPSKKLLKRL 94 >gi|52421248|ref|YP_087160.1| DNA binding protein HU [Bacteroides fragilis YCH46] gi|52218769|dbj|BAD51361.1| DNA binding protein HU [Bacteroides fragilis YCH46] Length = 90 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+K ++ E G KD + + T E+ + V E + I F TF + +R+ Sbjct: 1 MNKKDLIKVVATETGFPMKDVQKTIDTFLKELSEE-VNKEDVAIKDFGTFKTVIQKARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T + V++ ++V+ FK S Sbjct: 60 RNPATGELVEVPEKKVLKFKPS 81 >gi|226939799|ref|YP_002794872.1| integration host factor, beta subunit [Laribacter hongkongensis HLHK9] gi|254803536|sp|C1D546|IHFB_LARHH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226714725|gb|ACO73863.1| integration host factor, beta subunit [Laribacter hongkongensis HLHK9] Length = 99 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L KD+ V T+ + + S G+ I+I F +F + + R Sbjct: 1 MTKSELIARLAERYPHLVAKDTELAVKTILDAMAVSLASGQRIEIRGFGSFDLNYRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FKA L++R+ Sbjct: 61 GRNPKSGSSVHVPEKFVPHFKAGKELRERV 90 >gi|182414469|ref|YP_001819535.1| histone family protein DNA-binding protein [Opitutus terrae PB90-1] gi|177841683|gb|ACB75935.1| histone family protein DNA-binding protein [Opitutus terrae PB90-1] Length = 102 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+ ++V I K+ G +K V + I + G +++ +F V+ + Sbjct: 1 MSTNLTKREIVLEIYKKTGFPQKQVVESVQLTLDIIQKALAEGRNVELRNFGVLEVQVRK 60 Query: 61 SRVGRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93 +R+GRN + EV I R VV FK+ ILK+++ Sbjct: 61 ARIGRNPNKPEAEVVIPQRAVVKFKSGKILKQQL 94 >gi|58979591|gb|AAW83460.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979595|gb|AAW83462.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979599|gb|AAW83464.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979613|gb|AAW83471.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979615|gb|AAW83472.1| DNA-binding protein HU [Campylobacter upsaliensis] Length = 98 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 43/80 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RVV FK Sbjct: 61 RVPSTGKTIKVPATRVVKFK 80 >gi|254166674|ref|ZP_04873528.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|254168488|ref|ZP_04875332.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|289596099|ref|YP_003482795.1| histone family protein DNA-binding protein [Aciduliprofundum boonei T469] gi|197622543|gb|EDY35114.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|197624284|gb|EDY36845.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|289533886|gb|ADD08233.1| histone family protein DNA-binding protein [Aciduliprofundum boonei T469] Length = 89 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 47/83 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K+++K+ G+S+K + + +E+ D +G + + F F + + +R RN Sbjct: 5 SELAKTVAKKTGVSQKQARMVIRAFVDEVIDQVNKGNKVNLVGFGIFERRVQKARKARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 +T + + + ++ VF+ASS +K Sbjct: 65 RTKEVINVPEKKKFVFRASSKIK 87 >gi|16273140|ref|NP_439377.1| integration host factor subunit beta [Haemophilus influenzae Rd KW20] gi|260581140|ref|ZP_05848960.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] gi|1170525|sp|P43724|IHFB_HAEIN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1574152|gb|AAC22874.1| integration host factor, beta-subunit (himD) [Haemophilus influenzae Rd KW20] gi|260092168|gb|EEW76111.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] Length = 94 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S K+ L K+ V + I S G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|308271765|emb|CBX28373.1| DNA-binding protein HU 1 [uncultured Desulfobacterium sp.] Length = 107 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + ++DLV ++ + K++ V +F + + G+ +K++ F TF VK++ +R Sbjct: 16 ENMNKTDLVNEVAAIVS-NTKEAKAVVDCIFTSMTAALKNGDEVKLAGFGTFKVKERKAR 74 Query: 63 VGRNLQTNQEVKID 76 GRN +T +E+KID Sbjct: 75 TGRNPKTGEEIKID 88 >gi|124514774|gb|EAY56286.1| putative integration host factor, alpha subunit HimA like [Leptospirillum rubarum] gi|206602432|gb|EDZ38913.1| putative integration host factor, alpha subunit HimA-like [Leptospirillum sp. Group II '5-way CG'] Length = 98 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 6/89 (6%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFN----EICDSAVRGEAIKISSFATFHVKQKGSR 62 R D+V+ I ++ SR + +FV +F+ EI + GE +KI+ F TF V++ R Sbjct: 3 RLDIVQRILEKPEYSRY-TAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKINDR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS-SILK 90 GRN +T + V I V+F S S+LK Sbjct: 62 PGRNPKTGEPVLIPAHHTVLFHPSRSLLK 90 >gi|17548076|ref|NP_521478.1| histone-like DNA-binding protein HU-beta (NS1) [Ralstonia solanacearum GMI1000] gi|17430382|emb|CAD17147.1| probable histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum GMI1000] Length = 92 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S G+ + + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGNGDTVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|238063255|ref|ZP_04607964.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC 39149] gi|237885066|gb|EEP73894.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC 39149] Length = 241 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G R+ +T + + E+ + +GE + I+ F F + +G+R Sbjct: 18 VNKAELIEALAVRLG-DRRTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 76 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+A + K+ + Sbjct: 77 RNPRTGEAVKVKKTSVPTFRAGAGFKEMV 105 >gi|150005930|ref|YP_001300674.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|149934354|gb|ABR41052.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] Length = 94 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L K IS + G + V +L E+ +S +GE + + F +F VKQ+ + Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ N + I + FK S L K + Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLV 89 >gi|145629273|ref|ZP_01785072.1| integration host factor beta-subunit [Haemophilus influenzae 22.1-21] gi|145633319|ref|ZP_01789050.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae 3655] gi|145634450|ref|ZP_01790160.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae PittAA] gi|145636917|ref|ZP_01792582.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae PittHH] gi|145641112|ref|ZP_01796693.1| integration host factor beta-subunit [Haemophilus influenzae R3021] gi|148827069|ref|YP_001291822.1| integration host factor subunit beta [Haemophilus influenzae PittGG] gi|166918549|sp|A5UF83|IHFB_HAEIG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|144978776|gb|EDJ88499.1| integration host factor beta-subunit [Haemophilus influenzae 22.1-21] gi|144986165|gb|EDJ92755.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae 3655] gi|145268430|gb|EDK08424.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae PittAA] gi|145269998|gb|EDK09936.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae PittHH] gi|145274273|gb|EDK14138.1| integration host factor beta-subunit [Haemophilus influenzae 22.4-21] gi|148718311|gb|ABQ99438.1| hypothetical protein CGSHiGG_01900 [Haemophilus influenzae PittGG] gi|301169962|emb|CBW29566.1| integration host factor (IHF), DNA-binding protein, beta subunit [Haemophilus influenzae 10810] Length = 94 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S K+ L K+ V + I S G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|157964859|ref|YP_001499683.1| integration host factor alpha-subunit [Rickettsia massiliae MTU5] gi|157844635|gb|ABV85136.1| Integration host factor alpha-subunit [Rickettsia massiliae MTU5] Length = 119 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F+ I + A + + + + +F +F VKQ+ R Sbjct: 26 TITKKKIAAMLSSKLGFSNSLCEEIVHTVFSNILEIA-KEQKLTLKNFGSFEVKQQNPRP 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 85 GINFYTKAPVIIESKKHLRFVPSSKLKALINESTR 119 >gi|260222772|emb|CBA32664.1| Integration host factor subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 103 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RSDL+ ++ F + +KD+ V +F+E+ ++ V+G I+I +F + + S Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++K R + FK L+ R+ Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90 >gi|149190645|ref|ZP_01868913.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1] gi|148835528|gb|EDL52497.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1] Length = 90 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + ++ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLSGVSEALTEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I V F A LK + Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAV 89 >gi|34499324|ref|NP_903539.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC 12472] gi|34105175|gb|AAQ61531.1| probable DNA-binding protein hu-beta [Chromobacterium violaceum ATCC 12472] Length = 89 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +S + GL++ D R + + D+ I I + F VK+ +R G Sbjct: 1 MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVA-GKFKVKETAARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I +R V F AS LK RI Sbjct: 60 RNPKTGETIQIAAKRKVSFVASKQLKDRI 88 >gi|269958037|ref|YP_003327826.1| histone family protein DNA-binding protein [Xylanimonas cellulosilytica DSM 15894] gi|269306718|gb|ACZ32268.1| histone family protein DNA-binding protein [Xylanimonas cellulosilytica DSM 15894] Length = 93 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 51/92 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +S+LV +I+ + L++ + + + +S +GEA+K++ + ++ +R Sbjct: 2 SLNKSELVSAIAAKSELTKAQAEDALNAFQEVLVESLAKGEAVKLTGLLSIERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E++I V A S+LKK + + Sbjct: 62 GRNPRTGEEIQIPAGFGVKVSAGSVLKKAVSE 93 >gi|145351643|ref|XP_001420178.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580411|gb|ABO98471.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 115 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++KE G ++ R + + I + G+ + +S F TF KQ+ +R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN T +KI F ASS K D ++G+K Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFK----DLVKGKK 115 >gi|303327383|ref|ZP_07357824.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] gi|302862323|gb|EFL85256.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] Length = 90 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ + L++ + R + + DS + + ++ F TF V+ + +R G Sbjct: 1 MTKADLVEKIAAKANLTKAAAERALNAFLASVEDSLSKEAKLTLTGFGTFAVESRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I ++V F+ +LK Sbjct: 61 RNPRTGATLTIPACKMVKFRPGKMLK 86 >gi|161870175|ref|YP_001599345.1| integration host factor subunit beta [Neisseria meningitidis 053442] gi|161595728|gb|ABX73388.1| integration host factor beta-subunit [Neisseria meningitidis 053442] Length = 95 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L KD V L + + S RG+ I+I F +F + + +R+GRN +T + V++ + Sbjct: 13 LLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 72 Query: 80 VVVFKASSILKKRI 93 V FK L++R+ Sbjct: 73 VPHFKPGKELRERV 86 >gi|226357673|ref|YP_002787412.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] gi|226319915|gb|ACO47908.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] Length = 121 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I ++ +V I+ GL++K S V+ + I ++ G+++ + T V++ +R G Sbjct: 33 IGKTQMVDMIADRAGLTKKQSEEVVSVMLESIVEAVRSGKSVGLPGLGTLSVRETAARTG 92 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 T+++++I + + FKA++ LK Sbjct: 93 VRPGTSEKIQIAAGKKLAFKAATTLK 118 >gi|254506390|ref|ZP_05118532.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16] gi|219550564|gb|EED27547.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16] Length = 90 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I V F + LK + Sbjct: 61 RNPKTGEEIQIAAANVPAFVSGKALKDAV 89 >gi|332886429|gb|EGK06673.1| hypothetical protein HMPREF9456_00547 [Dysgonomonas mossii DSM 22836] Length = 88 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ GLS+ DS + + + + + + + F TF V QK +R G Sbjct: 1 MNKTELINAIAEKSGLSKVDSKKALEAFIESVTEEVKKDGKVALVGFGTFSVTQKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T + I ++ V FKA + L Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85 >gi|209696250|ref|YP_002264180.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] gi|208010203|emb|CAQ80530.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E++I V F A LK+ + Sbjct: 61 RNPKTGEEIQIKAANVPAFVAGKALKESV 89 >gi|222480977|ref|YP_002567214.1| histone family protein DNA-binding protein [Halorubrum lacusprofundi ATCC 49239] gi|222453879|gb|ACM58144.1| histone family protein DNA-binding protein [Halorubrum lacusprofundi ATCC 49239] Length = 206 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%) Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-------SFATFHVKQKGSRVGRNLQTNQ 71 GLS D+ + N + +G+ + + F TF + ++ +R GRN QT + Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183 Query: 72 EVKIDPRRVVVFKASSILKKRI 93 E++I + VV FKA + L K + Sbjct: 184 EIQIAAKNVVKFKAGAELSKAV 205 >gi|170288480|ref|YP_001738718.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2] gi|7245986|pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima gi|7245987|pdb|1B8Z|B Chain B, Hu From Thermotoga Maritima gi|388071|gb|AAA27416.1| Hu DNA-binding protein [Thermotoga maritima] gi|170175983|gb|ACB09035.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89 >gi|284007585|emb|CBA73152.1| integration host factor beta-subunit [Arsenophonus nasoniae] Length = 106 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+TRS+L++ + + + K V + + + + +GE I+I F +F + + R Sbjct: 12 TMTRSELIERLINQLAHIPAKLIEEAVKEMLDHMAITLAKGERIEIRGFGSFSLHYRAPR 71 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN +T +V + + V FK L+ R+ Sbjct: 72 IGRNPKTGDKVDLKGKHVPHFKPGKELRDRV 102 >gi|187918104|ref|YP_001883667.1| DNA-binding protein HbbU [Borrelia hermsii DAH] gi|119860952|gb|AAX16747.1| DNA-binding protein HbbU [Borrelia hermsii DAH] Length = 108 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K V F E+ +S I+ SF TF + K+ Sbjct: 9 VTKSDIVDQISLNIKNSNERLEKKYIRLVVDAFFEELKNSLCLNNIIEFRSFGTFELRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG + RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104 >gi|299065160|emb|CBJ36324.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CMR15] Length = 92 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S G+ + + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGSGDTVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >gi|194098875|ref|YP_002001939.1| integration host factor subunit beta [Neisseria gonorrhoeae NCCP11945] gi|240115896|ref|ZP_04729958.1| integration host factor subunit beta [Neisseria gonorrhoeae PID18] gi|260440289|ref|ZP_05794105.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2] gi|193934165|gb|ACF29989.1| integration host factor beta-subunit [Neisseria gonorrhoeae NCCP11945] Length = 92 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L KD V L + + S RG+ I+I F +F + + +R+GRN +T + V++ + Sbjct: 16 LLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 75 Query: 80 VVVFKASSILKKRI 93 V FK L++R+ Sbjct: 76 VPHFKPGKELRERV 89 >gi|53715708|ref|YP_101700.1| HU family DNA-binding protein [Bacteroides fragilis YCH46] gi|60683646|ref|YP_213790.1| putative histone-like DNA-binding protein HU4 [Bacteroides fragilis NCTC 9343] gi|253566476|ref|ZP_04843929.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5] gi|265767345|ref|ZP_06095011.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|52218573|dbj|BAD51166.1| DNA binding protein HU family [Bacteroides fragilis YCH46] gi|60495080|emb|CAH09899.1| putative histone-like DNA-binding protein HU4 [Bacteroides fragilis NCTC 9343] gi|251944648|gb|EES85123.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5] gi|263252650|gb|EEZ24162.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|301165158|emb|CBW24728.1| putative histone-like DNA-binding protein HU4 [Bacteroides fragilis 638R] Length = 96 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL++SI+ + L ++ V + I ++ +GE++ + F TF VK++ +R G NL Sbjct: 5 DLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKGYNLS 64 Query: 69 TNQEVKIDPRRVVVFKASS 87 T + + I ++ V FK + Sbjct: 65 TGEIMTIPGKKTVRFKPGA 83 >gi|152966297|ref|YP_001362081.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151360814|gb|ABS03817.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 185 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK++T V + I + +G+ I IS F TF + + +R G Sbjct: 1 MNKAEMVDALETRLG-GRKEATTAVEAVIELIQLTVAKGDKIAISGFGTFEKQVRNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEVVSD 90 >gi|222824223|ref|YP_002575797.1| DNA-binding protein HU [Campylobacter lari RM2100] gi|58979407|gb|AAW83368.1| DNA-binding protein HU [Campylobacter lari] gi|58979429|gb|AAW83379.1| DNA-binding protein HU [Campylobacter lari] gi|222539445|gb|ACM64546.1| DNA-binding protein HU [Campylobacter lari RM2100] Length = 100 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 41/80 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + I D +G++I F TF V ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDAGAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T +K+ +V FK Sbjct: 61 RVPSTGATIKVPATKVAKFK 80 >gi|260592454|ref|ZP_05857912.1| putative integration host factor IHF alpha subunit [Prevotella veroralis F0319] gi|260535500|gb|EEX18117.1| putative integration host factor IHF alpha subunit [Prevotella veroralis F0319] Length = 376 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KT+ + + +++K++ LS D FV T F I D +G +KI TF V++ Sbjct: 1 MAKTVIQI-IASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVK 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R N+ T + V I+ V F + +K+ + Sbjct: 60 PRESVNVNTGERVLIEGHDKVSFTPDAAMKELV 92 >gi|70731343|ref|YP_261084.1| DNA-binding protein HU subunit beta [Pseudomonas fluorescens Pf-5] gi|14194650|sp|Q9KHS6|DBHB_PSEF5 RecName: Full=DNA-binding protein HU-beta gi|7644386|gb|AAF65565.1|AF250140_2 histone-like protein HU [Pseudomonas fluorescens] gi|68345642|gb|AAY93248.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens Pf-5] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + R + + + + G+++ + F TF V + +R+G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK+ + Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89 >gi|88801872|ref|ZP_01117400.1| DNA-binding protein HU [Polaribacter irgensii 23-P] gi|88782530|gb|EAR13707.1| DNA-binding protein HU [Polaribacter irgensii 23-P] Length = 96 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS + G+ + D V E+ + G+ + + F +F +K + + G Sbjct: 1 MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKGALENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N +KI + FK + Sbjct: 61 RNISKNTTIKIPSHNIPAFKPA 82 >gi|59801031|ref|YP_207743.1| IhfB [Neisseria gonorrhoeae FA 1090] gi|239999161|ref|ZP_04719085.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02] gi|240013931|ref|ZP_04720844.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI18] gi|240016373|ref|ZP_04722913.1| integration host factor subunit beta [Neisseria gonorrhoeae FA6140] gi|240080492|ref|ZP_04725035.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19] gi|240113140|ref|ZP_04727630.1| integration host factor subunit beta [Neisseria gonorrhoeae MS11] gi|240118194|ref|ZP_04732256.1| integration host factor subunit beta [Neisseria gonorrhoeae PID1] gi|240121500|ref|ZP_04734462.1| integration host factor subunit beta [Neisseria gonorrhoeae PID24-1] gi|240123742|ref|ZP_04736698.1| integration host factor subunit beta [Neisseria gonorrhoeae PID332] gi|240125933|ref|ZP_04738819.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-92-679] gi|254493934|ref|ZP_05107105.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291] gi|268599221|ref|ZP_06133388.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11] gi|297250508|ref|ZP_06864452.2| integration host factor subunit beta [Neisseria polysaccharea ATCC 43768] gi|59717926|gb|AAW89331.1| integration host factor beta subunit [Neisseria gonorrhoeae FA 1090] gi|226512974|gb|EEH62319.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291] gi|268583352|gb|EEZ48028.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11] gi|296838821|gb|EFH22759.1| integration host factor subunit beta [Neisseria polysaccharea ATCC 43768] gi|316984100|gb|EFV63078.1| integration host factor subunit beta [Neisseria meningitidis H44/76] gi|317164448|gb|ADV07989.1| integration host factor subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 98 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L KD V L + + S RG+ I+I F +F + + +R+GRN +T + V++ + Sbjct: 16 LLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 75 Query: 80 VVVFKASSILKKRI 93 V FK L++R+ Sbjct: 76 VPHFKPGKELRERV 89 >gi|258648340|ref|ZP_05735809.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella tannerae ATCC 51259] gi|260851505|gb|EEX71374.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella tannerae ATCC 51259] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 K++ R + +S G+++ I SF TF VK+K R+ N Q + + P+ + Sbjct: 19 KETQRLASIFSTVFAESLEEGDSLSIQSFGTFEVKKKLERIVTNPTNKQRMLVPPKLALS 78 Query: 83 FKASSILKKRI 93 FK S+ILK +I Sbjct: 79 FKPSNILKDKI 89 >gi|238790629|ref|ZP_04634394.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641] gi|238721298|gb|EEQ12973.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+ +++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSV 89 >gi|158521728|ref|YP_001529598.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158510554|gb|ABW67521.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 +T+S+L+ ++KE G+S+ + + + + + + + E + + F TF ++ +R Sbjct: 1 MTKSELIDKMAKEAGISKVAAGAALNSFMDGVSKALKKKEGKVTLVGFGTFSKVRRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + +KI VV FKA LK I Sbjct: 61 GRNPQTGEPIKIKAGNVVKFKAGKKLKDAI 90 >gi|315633974|ref|ZP_07889263.1| integration host factor beta subunit [Aggregatibacter segnis ATCC 33393] gi|315477224|gb|EFU67967.1| integration host factor beta subunit [Aggregatibacter segnis ATCC 33393] Length = 94 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + K + K V + ++ GE I++ F +F + + R+ Sbjct: 1 MTKSELIELLVQKNHNVPVKSVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90 >gi|159900715|ref|YP_001546962.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893754|gb|ABX06834.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 95 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 47/82 (57%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + +++ G+S+K++ R V + + + + GE + ++ F TF V+++ +R G N + Sbjct: 5 EFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQGVNPK 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T + + I+ + F AS+ LK Sbjct: 65 TRERMTIEATKTPGFSASNSLK 86 >gi|325284314|ref|YP_004256854.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] gi|324316378|gb|ADY27491.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] Length = 128 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/84 (22%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L+ +S + GL+R+ ++ +L + + ++ G+ + + TF +K+ +R G Sbjct: 42 KTALIAELSSKTGLTRQQASGVTDSLLSTVVEALQAGQTVSLPGLGTFSIKETAARTGVK 101 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T ++++I + V FK ++ LK Sbjct: 102 PGTTEKIQIPAGKKVAFKVATGLK 125 >gi|325278965|ref|YP_004251507.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324310774|gb|ADY31327.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 95 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS+ G+ + V I +S V G+ + + F +F VK++ + Sbjct: 1 MTKADIVNEISRTTGIEKVAVQATVEAFMESIKNSVVEGKNVYLRGFGSFVVKKRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RN+ N +KI + FK S K ++D++G Sbjct: 61 RNISKNVTIKIPEHFIPSFKPS----KSFVNDVKG 91 >gi|302381902|ref|YP_003817725.1| integration host factor subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302192530|gb|ADL00102.1| integration host factor, beta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 96 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E L+ + R V + + D+ G +++ F F V+ + +R Sbjct: 1 MIKSELIEKLAAENTHLTHAEVERVVNVVLGRMTDAMASGGRVELRGFGAFSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK+ L++R+ Sbjct: 61 GRNPRTGETVDVPAKAVPFFKSGKELRERL 90 >gi|194364617|ref|YP_002027227.1| histone family protein DNA-binding protein [Stenotrophomonas maltophilia R551-3] gi|254523802|ref|ZP_05135857.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14] gi|194347421|gb|ACF50544.1| histone family protein DNA-binding protein [Stenotrophomonas maltophilia R551-3] gi|219721393|gb|EED39918.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14] Length = 90 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ L++ +S+R V + + + G+A+ + F TF V+ + +R G Sbjct: 1 MNKTELIDAVAEAADLTKAESSRAVDAVVAAVTKALKDGDAVTLVGFGTFQVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAV 89 >gi|114799727|ref|YP_761164.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] gi|114739901|gb|ABI78026.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] Length = 91 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T L +S+ + +K + V+ + + +G+ ++I+ V++ +R G Sbjct: 2 LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T +E+KI + V F+ S LK+R++ Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERVL 91 >gi|300023466|ref|YP_003756077.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525287|gb|ADJ23756.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 90 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ DL+ +++++ L+++ ++ V + I ++ G ++I F TF V + +R G Sbjct: 1 MSKKDLIDAVARDCELTKEKASGVVDAVLAHIREAMKEGHEVRIPDFGTFKVAARKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T ++I RV F + LK Sbjct: 61 RNPATGMTIQIPASRVPKFTPAKGLK 86 >gi|262341299|ref|YP_003284154.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272636|gb|ACY40544.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 94 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 43/82 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I E G R D+ + + T +I S GE + + F +F +K + ++G Sbjct: 1 MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 R++ ++ + I + FK + Sbjct: 61 RHISKDESIVIPAHNIPAFKPA 82 >gi|260592453|ref|ZP_05857911.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella veroralis F0319] gi|260535499|gb|EEX18116.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella veroralis F0319] Length = 97 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 47/85 (55%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + ++ G ++ +S + V + +++ S G+A+ +S F TF VK++ RV N Sbjct: 5 EFIAELASRTGHTQDESQKMVKAVIDQMAKSFETGDAVPVSGFGTFEVKKRLERVMVNPS 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T + + P+ V+ FK ++ +K ++ Sbjct: 65 TGLRMLVPPKLVLNFKPAATIKGQV 89 >gi|254502221|ref|ZP_05114372.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] gi|222438292|gb|EEE44971.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] Length = 91 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F + ++ G ++I F F V ++ + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDASFEAVTETLKGGGEVRIIGFGNFTVSERAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAV 89 >gi|189424985|ref|YP_001952162.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421244|gb|ACD95642.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 92 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++++ GL + ++ + V + + +G+ + + F TF ++ +R G Sbjct: 1 MTKAELITAVAEKAGLKKVEAEKAVAAFVSAVTGCLKQGDKLSLVGFGTFSTSKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT +++ I V FK LK+ + Sbjct: 61 QNPQTGKKITIAAATVPKFKPGKTLKEAV 89 >gi|146329216|ref|YP_001209151.1| DNA-binding protein HU [Dichelobacter nodosus VCS1703A] gi|146232686|gb|ABQ13664.1| DNA-binding protein Hu [Dichelobacter nodosus VCS1703A] Length = 104 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ G+++ + + + + + +S V+G+ + + F TF +++ +R+G Sbjct: 1 MNKTELVDVIAEAAGITKAQAGKALDAFTDCVTESLVKGDKVTLIGFGTFETRERSARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N +T +++ I FKA LK Sbjct: 61 HNPRTREKINIAASTTPAFKAGKKLK 86 >gi|329956611|ref|ZP_08297184.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056] gi|328523983|gb|EGF51059.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056] Length = 88 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 39/71 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ RVG Sbjct: 1 MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRVG 60 Query: 65 RNLQTNQEVKI 75 N T + ++I Sbjct: 61 INPATKKPIQI 71 >gi|319951158|ref|ZP_08025003.1| histone family protein DNA-binding protein [Dietzia cinnamea P4] gi|319435174|gb|EFV90449.1| histone family protein DNA-binding protein [Dietzia cinnamea P4] Length = 126 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ G + +T + + I + GE+I I F F K + +RV Sbjct: 1 MNKADLIAELADRMGGDHQLATEALENTLDIIVRTVASGESITIMGFGIFEKKARAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + + + P VF+ K I Sbjct: 61 RNPHTGESIPVPPTYSPVFRPGQYFKSVI 89 >gi|282599288|ref|YP_003358600.1| putative DNA-binding protein [Shigella phage phiSboM-AG3] gi|226973594|gb|ACO94347.1| putative DNA-binding protein [Shigella phage phiSboM-AG3] Length = 92 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++ V I+ +++ ++ + V + + + + G ++++ F F VK + +R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN Q ++I+ + VV FK LK Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLK 86 >gi|313185143|gb|ADR50136.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 4 TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57 TIT+SD+V IS L +K + F E+ + I+ SF TF V K Sbjct: 8 TITKSDIVDQISLNTKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRK 67 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +KG RN QT + VK+ V F+ LK+R+ Sbjct: 68 RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|323492062|ref|ZP_08097224.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323313623|gb|EGA66725.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 90 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK + Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDSV 89 >gi|332187527|ref|ZP_08389264.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] gi|332012456|gb|EGI54524.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] Length = 94 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I + GL+ ++ VT F+EI +++ F F + + +R Sbjct: 1 MIRSELVQKIGQHNPGLNPREIELIVTIFFDEITKRLAANGRVELRGFGAFSTRARDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + +RV FK ++ R+ Sbjct: 61 GRNPRTGETVDVVAKRVPYFKPGKEMRARL 90 >gi|160934238|ref|ZP_02081625.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753] gi|156866911|gb|EDO60283.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753] Length = 84 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 43/81 (53%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 +++++ +S+KD+ V + + I ++ + E +++ F TF V+ + R GR+ +TN Sbjct: 2 AVAEKANISKKDADTAVNAVIDTIVETLAKDEKVQLVGFGTFEVRSRSERQGRDPRTNSP 61 Query: 73 VKIDPRRVVVFKASSILKKRI 93 + I +V FK K I Sbjct: 62 ITIPASKVPAFKVGKAFKSAI 82 >gi|167042006|gb|ABZ06742.1| putative bacterial DNA-binding protein [uncultured marine microorganism HF4000_141F21] Length = 91 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV IS L++ D+ R + I + E +KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKNDEQVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87 >gi|298530305|ref|ZP_07017707.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509679|gb|EFI33583.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 96 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 45/86 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T+T+SDLV + ++ R + + L + I + + ++ IS F F K Sbjct: 1 MVNTLTKSDLVDRVYEQSDRKRAEVKGQIEHLLDIIKQAIKKDHSLLISGFGKFETYDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 R GRN QT++ + + R+VVVF+ S Sbjct: 61 PRKGRNPQTSEAIILPGRKVVVFRLS 86 >gi|10954922|ref|NP_053342.1| hypothetical protein pTi-SAKURA_p104 [Agrobacterium tumefaciens] gi|41223342|ref|NP_396642.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58] gi|6498275|dbj|BAA87727.1| tiorf102 [Agrobacterium tumefaciens] gi|159141770|gb|AAK91083.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58] Length = 92 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ + V ++F +I D+A+ G I SF F +K R GR Sbjct: 3 TTNEIADKIAAEQSLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 N T +KI + + F K + D + G Sbjct: 63 NPATGATIKIAASKKLTFTPG----KAVKDALNG 92 >gi|84393074|ref|ZP_00991840.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|86147879|ref|ZP_01066184.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|148981204|ref|ZP_01816330.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] gi|84376326|gb|EAP93208.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|85834306|gb|EAQ52459.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|145960960|gb|EDK26286.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] Length = 90 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDSV 89 >gi|53717643|ref|YP_106629.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243] gi|53723975|ref|YP_104420.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344] gi|67643053|ref|ZP_00441802.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4] gi|121599876|ref|YP_994676.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1] gi|124384371|ref|YP_001027609.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229] gi|126442121|ref|YP_001057059.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668] gi|126450406|ref|YP_001082492.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247] gi|126453925|ref|YP_001064289.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a] gi|134281504|ref|ZP_01768212.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305] gi|167001301|ref|ZP_02267100.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20] gi|167582881|ref|ZP_02375755.1| DNA-binding protein HU-alpha [Burkholderia thailandensis TXDOH] gi|167621021|ref|ZP_02389652.1| DNA-binding protein HU-alpha [Burkholderia thailandensis Bt4] gi|167717366|ref|ZP_02400602.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei DM98] gi|167736410|ref|ZP_02409184.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 14] gi|167813485|ref|ZP_02445165.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 91] gi|167822026|ref|ZP_02453497.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 9] gi|167834839|ref|ZP_02461722.1| DNA-binding protein HU-alpha [Burkholderia thailandensis MSMB43] gi|167843639|ref|ZP_02469147.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei B7210] gi|167892111|ref|ZP_02479513.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 7894] gi|167900623|ref|ZP_02487828.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei NCTC 13177] gi|167908846|ref|ZP_02495937.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 112] gi|167921116|ref|ZP_02508207.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei BCC215] gi|217424016|ref|ZP_03455516.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576] gi|226193072|ref|ZP_03788682.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan 9] gi|237814395|ref|YP_002898846.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346] gi|242314515|ref|ZP_04813531.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b] gi|254174725|ref|ZP_04881386.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399] gi|254184070|ref|ZP_04890661.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655] gi|254186534|ref|ZP_04893051.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur 52237] gi|254194585|ref|ZP_04901016.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13] gi|254201495|ref|ZP_04907859.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH] gi|254206834|ref|ZP_04913185.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU] gi|254260815|ref|ZP_04951869.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a] gi|254298660|ref|ZP_04966111.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e] gi|254357388|ref|ZP_04973662.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280] gi|14194657|sp|Q9ZF89|DBHA_BURPS RecName: Full=DNA-binding protein HU-alpha gi|4139233|gb|AAD05170.1| DbhB [Burkholderia pseudomallei 1026b] gi|52208057|emb|CAH33987.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243] gi|52427398|gb|AAU47991.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344] gi|121228686|gb|ABM51204.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1] gi|124292391|gb|ABN01660.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229] gi|126221614|gb|ABN85120.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668] gi|126227567|gb|ABN91107.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a] gi|126243276|gb|ABO06369.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247] gi|134247171|gb|EBA47257.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305] gi|147747389|gb|EDK54465.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH] gi|147752376|gb|EDK59442.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU] gi|148026452|gb|EDK84537.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280] gi|157808487|gb|EDO85657.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e] gi|157934219|gb|EDO89889.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur 52237] gi|160695770|gb|EDP85740.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399] gi|169651335|gb|EDS84028.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13] gi|184214602|gb|EDU11645.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655] gi|217393079|gb|EEC33101.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576] gi|225934672|gb|EEH30649.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan 9] gi|237505255|gb|ACQ97573.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346] gi|238524297|gb|EEP87730.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4] gi|242137754|gb|EES24156.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b] gi|243062917|gb|EES45103.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20] gi|254219504|gb|EET08888.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a] Length = 92 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+++++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|218710870|ref|YP_002418491.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32] gi|218323889|emb|CAV20250.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32] Length = 110 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + D+ G+ +++ F TF V + +R G Sbjct: 21 MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 80 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T E++I V F A LK Sbjct: 81 RNPKTGDEIQIAAANVPAFVAGKALK 106 >gi|88860448|ref|ZP_01135086.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] gi|88817646|gb|EAR27463.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] Length = 90 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + + + G+++ + F +F V+++ +R G Sbjct: 1 MNKSQLIDEIAAGADISKAAAGRALDSFIDAVTTALKDGDSVALVGFGSFSVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + FKA LK + Sbjct: 61 RNPQTGATIEIAAANIPSFKAGKALKDAV 89 >gi|313185127|gb|ADR50128.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 4 TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57 TIT+SD+V IS L +K + F E+ + I+ SF TF V K Sbjct: 8 TITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRK 67 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +KG RN QT + VK+ V F+ LK+R+ Sbjct: 68 RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|257091775|ref|YP_003165416.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044299|gb|ACV33487.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 94 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ + + + + I DS +GE + + F +F + SR G Sbjct: 1 MNKSELIDAIAARSELSKAAAAKALDAVIETIVDSVAQGETVTLVGFGSFKASGRASREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T +++ I V F A + K R+ Sbjct: 61 KNPKTGEKIHIPETTVPKFSAGATFKARV 89 >gi|313159618|gb|EFR58978.1| putative DNA-binding protein HU [Alistipes sp. HGB5] Length = 92 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+VK +++E G+ V E+ + +R E + + F TF +K + + Sbjct: 1 MTKADIVKQLAQETGVEAVTVLAVVEGFMEEVRAAQIRKENVFLRGFGTFLIKHRKEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N +KI + FK S ++ Sbjct: 61 RNITKNTTIKIPAHDIPAFKPSPAFQR 87 >gi|300725859|ref|ZP_07059323.1| DNA-binding protein, HU family [Prevotella bryantii B14] gi|299776847|gb|EFI73393.1| DNA-binding protein, HU family [Prevotella bryantii B14] Length = 94 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 48/87 (55%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+ I+++ GLS+ DS + + I ++ + +++ F TF V + +R Sbjct: 2 KIMNKTELIDKIAEKAGLSKADSKKAFESTVAAIKEALAENDKVQLIGFGTFSVTSRPAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 G N T +++I + V+ FKA + L Sbjct: 62 EGINPSTKAKIQIPAKNVIKFKAGAEL 88 >gi|269977423|ref|ZP_06184395.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1] gi|307700288|ref|ZP_07637328.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16] gi|269934339|gb|EEZ90901.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1] gi|307614499|gb|EFN93728.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16] Length = 91 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV I+K LS+ ++ ++ + + +S +GE +K++ + +R G Sbjct: 1 MNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V A S LKK + Sbjct: 61 RNPRTGEEIKIPAGFGVKISAGSTLKKAV 89 >gi|325679104|ref|ZP_08158698.1| DNA-binding protein HU-beta [Ruminococcus albus 8] gi|324109228|gb|EGC03450.1| DNA-binding protein HU-beta [Ruminococcus albus 8] Length = 92 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ G ++K++ + + + I ++ +G+ + I F TF V+ + ++ Sbjct: 1 MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGDKVAIPGFGTFEVRDRAAKKS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + + + ++V FKA+ LK Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALK 86 >gi|258647295|ref|ZP_05734764.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC 51259] gi|260852812|gb|EEX72681.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC 51259] Length = 90 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GLS+ DS + + I + + + + F TF V ++ + G Sbjct: 1 MNKSELVSAIAASAGLSKVDSKKALDATLEAIAGALKANDKVALLGFGTFAVTERPAHDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T +++ I ++V+ FKA + L Sbjct: 61 VNPATKEKIHIPAKKVIKFKAGAEL 85 >gi|254420350|ref|ZP_05034074.1| integration host factor, beta subunit [Brevundimonas sp. BAL3] gi|196186527|gb|EDX81503.1| integration host factor, beta subunit [Brevundimonas sp. BAL3] Length = 117 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E L+ + R V + ++ + G +++ F F V+ + +R+ Sbjct: 22 MIKSELIEKLAAENTHLTHAEVERLVNVILGKMTGALSEGGRVELRGFGAFSVRSRPARL 81 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK+ L++R+ Sbjct: 82 GRNPRTGETVEVPAKAVPFFKSGKELRERL 111 >gi|305666663|ref|YP_003862950.1| DNA-binding protein HU-beta [Maribacter sp. HTCC2170] gi|88707468|gb|EAQ99712.1| DNA-binding protein HU-beta (NS1) (HU-1) [Maribacter sp. HTCC2170] Length = 90 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKSLESFLGNVEGSLKKGDRVSLVGFGSWSVSRRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I + VV FKA + L K + Sbjct: 61 RNPSTGKTIQIAAKNVVKFKAGADLGKAV 89 >gi|121604539|ref|YP_981868.1| histone family protein DNA-binding protein [Polaromonas naphthalenivorans CJ2] gi|120593508|gb|ABM36947.1| histone family protein DNA-binding protein [Polaromonas naphthalenivorans CJ2] Length = 90 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I++ +S+ +TR + + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAQNADISKAAATRALESTISAVKATLKKGGSVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86 >gi|332703149|ref|ZP_08423237.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553298|gb|EGJ50342.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 95 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 33 FNEICDSAVRG----EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 F+ C++ +G E +++ + +F + + SR GRN QT QE+ I ++VV F S Sbjct: 29 FDVFCETLAQGIKSNEGVRLPNVGSFALSARASRTGRNPQTGQEITIPEKKVVKFTTSKT 88 Query: 89 LKKRI 93 LK+ + Sbjct: 89 LKEDL 93 >gi|160889559|ref|ZP_02070562.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC 8492] gi|156861076|gb|EDO54507.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC 8492] Length = 404 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I +S + + +KI TF + G Sbjct: 1 MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93 >gi|256826372|ref|YP_003150332.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547] gi|256689765|gb|ACV07567.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547] Length = 91 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L +I+++ +S KD+ ++ + + IC++ +GE + + T ++ +R G Sbjct: 1 MNRTELASAIAQQADVSAKDAAAVLSAMGDVICETVGKGEKVSLPGLMTIERVERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I A S LK Sbjct: 61 RNPRTGESMEIPASFGAKLSAGSALK 86 >gi|189218096|ref|YP_001938738.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] gi|189184954|gb|ACD82139.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] Length = 109 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 9/91 (9%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHVKQKG 60 +TR DLV +S + GL +++ V +F EI D + + E I++ +F F V + Sbjct: 1 MTRRDLVVKVSTKTGLPQQE----VAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRK 56 Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILK 90 +R+GRN + + ++ I PR V+ FK +K Sbjct: 57 ARIGRNPRNPEKDILIPPRAVIRFKPGKEVK 87 >gi|74316025|ref|YP_313765.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] gi|74055520|gb|AAZ95960.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 98 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 43/83 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ + E +S+ + R + + + + +G+++ + F TF ++ +R G Sbjct: 1 MNKSELIDFAAAEADISKAAAGRALDAILAAVTKAVAKGDSVTLVGFGTFKSSKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN QT E+KI V F A + Sbjct: 61 RNPQTGNEIKIAATTVPRFTAGA 83 >gi|281412322|ref|YP_003346401.1| histone family protein DNA-binding protein [Thermotoga naphthophila RKU-10] gi|281373425|gb|ADA66987.1| histone family protein DNA-binding protein [Thermotoga naphthophila RKU-10] Length = 90 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 31 TLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 T+ I ++ +GE ++I F +F V++ +R G N QT + + I R+V FK LK Sbjct: 27 TILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKFKPGKALK 86 Query: 91 KRI 93 +++ Sbjct: 87 EKV 89 >gi|212702269|ref|ZP_03310397.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC 29098] gi|212674332|gb|EEB34815.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC 29098] Length = 90 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ + L++ + R + + +S + + + ++ F TF V+ + R G Sbjct: 1 MTKADLVEKIAAKANLTKAAAERALNAFLASVEESLAKDDRLTLTGFGTFVVETRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + + I ++V F+ +LK Sbjct: 61 RNPRTGETLTIPACKMVKFRPGKMLK 86 >gi|74316975|ref|YP_314715.1| integration host factor subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74056470|gb|AAZ96910.1| integration host factor, beta subunit [Thiobacillus denitrificans ATCC 25259] Length = 94 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ + S D V T+ + + + RGE I+I F +F + + +R+ Sbjct: 1 MTKSELIAQLAGRHSQFSIADIEMAVKTILDALAKNLSRGERIEIRGFGSFSLSFRPARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V++ + V FKA L+ R+ Sbjct: 61 GRNPKSGERVQVPAKYVPHFKAGKELRDRV 90 >gi|285017391|ref|YP_003375102.1| DNA-binding protein hu (histone-like protein hu) [Xanthomonas albilineans GPE PC73] gi|283472609|emb|CBA15114.1| probable dna-binding protein hu (histone-like protein hu) [Xanthomonas albilineans] Length = 90 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ ++ R V +E+ + +G+++ + F TF V+ + R GRN +T +KI + Sbjct: 17 SKAEAGRAVDAFVSEVTKALKKGDSVTLVGFGTFQVRDRAERTGRNPKTGDSIKIAASKN 76 Query: 81 VVFKASSILKKRI 93 FKA LK + Sbjct: 77 PTFKAGKALKDAV 89 >gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM 10152] gi|54017689|dbj|BAD59059.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM 10152] Length = 232 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTATAAVEHVVDTIVRAVHKGQSVTITGFGVFEQRKRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+ + K I Sbjct: 61 RNPRTGETVKVKATSVPAFRPGAQFKAVI 89 >gi|330837189|ref|YP_004411830.1| histone family protein DNA-binding protein [Spirochaeta coccoides DSM 17374] gi|329749092|gb|AEC02448.1| histone family protein DNA-binding protein [Spirochaeta coccoides DSM 17374] Length = 104 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63 +T++ +++++ ++ L+R D + F EI + + I++ F TF V+ +KG Sbjct: 7 LTKAAIIENLHQKLNLNRSDIHMVLDEFFEEIKNGLQEDKIIELRGFGTFEVRTRKGREK 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V +D V +F+ LK + D Sbjct: 67 ARNPKTGDVVAVDTHGVAIFRPGKELKDYVWD 98 >gi|325663704|ref|ZP_08152108.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA] gi|331087225|ref|ZP_08336295.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470197|gb|EGC73430.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA] gi|330408911|gb|EGG88372.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA] Length = 91 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +S+KDS + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEAAEVSKKDSEKVLKAFVDVVTEELKKGEKVQLVGFGTFEVTERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + + I + FKA LK Sbjct: 61 RNPHTKETMMIAACKAPKFKAGKALK 86 >gi|170745590|ref|YP_001776812.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170752147|ref|YP_001783293.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170659244|gb|ACB28296.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170659274|gb|ACB28325.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 108 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV I+ K L +D V T+ + + VRG+ I++ F TF V+ +R+ Sbjct: 1 MIRSELVARIAAKNPHLYARDVEAIVATILKTMTTALVRGDRIELREFGTFTVRHHRARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN ++ V + + V FK S ++ + ++ + + + +PS Sbjct: 61 ARNPRSQAVVTVPAKGRVAFKPSKAMR----ELLQAKPLSTEHSPAPS 104 >gi|317480051|ref|ZP_07939163.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|316903793|gb|EFV25635.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 393 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I +S + + +KI TF + G Sbjct: 1 MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93 >gi|148269794|ref|YP_001244254.1| histone family protein DNA-binding protein [Thermotoga petrophila RKU-1] gi|147735338|gb|ABQ46678.1| bacterial nucleoid protein Hbs [Thermotoga petrophila RKU-1] Length = 90 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVRVILDTILETISEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKV 89 >gi|270296683|ref|ZP_06202882.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272670|gb|EFA18533.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 393 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I +S + + +KI TF + G Sbjct: 1 MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93 >gi|329120384|ref|ZP_08249051.1| integration host factor beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327462339|gb|EGF08665.1| integration host factor beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 102 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%) Query: 5 ITRSDLVKSISKEFG-------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ ++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMARLADVFADKHPLSPLMSKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R GRN +T +V + + V FK L++R+ Sbjct: 61 HRPARQGRNPKTGDKVDVPEKHVPHFKPGKELRERV 96 >gi|330466240|ref|YP_004403983.1| histone family protein DNA-binding protein [Verrucosispora maris AB-18-032] gi|328809211|gb|AEB43383.1| histone family protein DNA-binding protein [Verrucosispora maris AB-18-032] Length = 219 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G RK +T + + E+ + +GE + I+ F F + +G+R Sbjct: 1 MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+ + K+ + Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGAGFKEMV 88 >gi|56552697|ref|YP_163536.1| integration host factor subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241762613|ref|ZP_04760686.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753662|ref|YP_003226555.1| integration host factor subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544271|gb|AAV90425.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241372808|gb|EER62512.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553025|gb|ACV75971.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 94 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+++++ + LS ++ + F+ I +G ++I F F + + +R+ Sbjct: 1 MIRSELIQTLANDNPELSSEEIEHIIDVFFDGITHHLAKGGRVEIRGFGAFSTRFRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V+++ +RV FK +++ + Sbjct: 61 GRNPRTGEKVEVEAKRVPYFKPGKEIREHL 90 >gi|228469635|ref|ZP_04054615.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] gi|228308828|gb|EEK17529.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] Length = 90 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 46/82 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++VKSI+ G+ R++ + V + + ++ +G+ + + F +F VK++ + Sbjct: 1 MTKAEVVKSIADTTGVDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ + + R+V FK S Sbjct: 61 RNISKQTTIIVPARKVPTFKPS 82 >gi|320088600|emb|CBY98359.1| DNA-binding protein HU-alpha NS2; HU-2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 74 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 40/74 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPR 78 RN QT +E+KI R Sbjct: 61 RNPQTGKEIKIRRR 74 >gi|303257169|ref|ZP_07343183.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|331000812|ref|ZP_08324458.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] gi|302860660|gb|EFL83737.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|329570340|gb|EGG52073.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] Length = 105 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 42/86 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++++++++ E GL++ + + + + I + G + F F+ Q+ +R G Sbjct: 1 MNKTEMIEAVASETGLAKTEVAKVLNAYTDTIVKTVAEGGEYTVIGFGKFYASQRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T E+KI V F A K Sbjct: 61 RNPSTGVEIKIPAAMVPKFTAGKAFK 86 >gi|254283717|ref|ZP_04958685.1| DNA-binding protein HU [gamma proteobacterium NOR51-B] gi|219679920|gb|EED36269.1| DNA-binding protein HU [gamma proteobacterium NOR51-B] Length = 90 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+++ LS+ + R + + + ++ + + + + F TF VK + +R G Sbjct: 1 MNKNDLIDAIAEDADLSKASAARALDATLSAVTEALSKQDTVSLVGFGTFSVKHRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + ++I FK LK + Sbjct: 61 RNPRSGETIQIKASNNPSFKPGKALKDAV 89 >gi|167042078|gb|ABZ06813.1| putative bacterial DNA-binding protein [uncultured marine microorganism HF4000_141I21] Length = 91 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV IS L++ D+ R + I + E +KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKSDEQVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87 >gi|308808790|ref|XP_003081705.1| unnamed protein product [Ostreococcus tauri] gi|116060170|emb|CAL56229.1| unnamed protein product [Ostreococcus tauri] Length = 123 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 40/84 (47%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L+ +++ E G ++ R + F+ I + G+ + IS F TF K + +R GRN T Sbjct: 36 LIDAVAAETGETKASVGRVLNACFDVIGATVQSGDKVAISKFGTFARKTRAARDGRNPMT 95 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +KI F ASS K + Sbjct: 96 GAPLKIPATDYPSFSASSTWKDAV 119 >gi|300115489|ref|YP_003762064.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] gi|299541426|gb|ADJ29743.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] Length = 94 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV + E LS+ + R V LF I + ++ F +F V+++ +R G Sbjct: 1 MNKTELVNFVVLEANLSQAVAQRAVNALFQTITGVLSEKGKVNLAGFGSFSVQKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ Q+ + + I + V FK S+ LK+ + R Sbjct: 61 RHPQSGEVIAIQAKSVPTFKPSNALKEIVQQRKR 94 >gi|95929490|ref|ZP_01312233.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95134606|gb|EAT16262.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 94 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ + + L++K+S V T+F+ I + + G+ ++I F +F ++++ +R Sbjct: 1 MTKSQLIERLMESTSDLNKKESELVVNTIFDSIGSALIGGDRVEIRGFGSFSIREREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + I ++ FK L++R+ Sbjct: 61 ARNPKSGNLINIPSKKTPFFKTGKELRERV 90 >gi|303237141|ref|ZP_07323711.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] gi|302482528|gb|EFL45553.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] Length = 92 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+S+KD + V + I DS ++ E + + F +F VK + + Sbjct: 1 MTKADIINEIASSTGISKKDVSAVVESFMEAIKDSLLKSKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I FK + K ++DM+ Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMK 91 >gi|260779568|ref|ZP_05888458.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC BAA-450] gi|260604377|gb|EEX30681.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC BAA-450] Length = 90 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F + LK + Sbjct: 61 RNPKTGDEIQIAAANVPAFVSGKALKDAV 89 >gi|29654755|ref|NP_820447.1| DNA-binding protein HU [Coxiella burnetii RSA 493] gi|154705755|ref|YP_001423922.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111] gi|161830880|ref|YP_001597305.1| DNA-binding protein HU [Coxiella burnetii RSA 331] gi|165919394|ref|ZP_02219460.1| DNA-binding protein HU [Coxiella burnetii RSA 334] gi|212212172|ref|YP_002303108.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212] gi|212219188|ref|YP_002305975.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154] gi|29542023|gb|AAO90961.1| DNA-binding protein HU [Coxiella burnetii RSA 493] gi|154355041|gb|ABS76503.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111] gi|161762747|gb|ABX78389.1| DNA-binding protein HU [Coxiella burnetii RSA 331] gi|165916910|gb|EDR35514.1| DNA-binding protein HU [Coxiella burnetii RSA 334] gi|212010582|gb|ACJ17963.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212] gi|212013450|gb|ACJ20830.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154] Length = 94 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I++ +S+ + R + + + S GE + + F +F Q+ +R G Sbjct: 1 MNKNELIEVIAQSADISKNAAGRALDAFVDSVTKSLQEGEDVVLVGFGSFTTSQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I V FKA LK + Sbjct: 61 RNPQTGDTMQIPAATVARFKAGKKLKDAV 89 >gi|46201963|ref|ZP_00054041.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++ GLS+ + + F I + G+ +++ F +F V Q+ ++ G Sbjct: 1 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + F A LK + Sbjct: 61 RNPRTGATIKIAASKAPKFTAGKGLKDAV 89 >gi|239616737|ref|YP_002940059.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239505568|gb|ACR79055.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 90 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I+ G+++K + + + + +GE +K+ F TF V + R G Sbjct: 1 MNKKELVAEIAGRTGVTKKRAAEILDCFIEIVGEKLSKGEEVKLVGFGTFEVATRKPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + +KI +V F+A LK+++ Sbjct: 61 VNPRTKKPIKIPGGKVPKFRAGKELKEKV 89 >gi|51244670|ref|YP_064554.1| DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54] gi|50875707|emb|CAG35547.1| probable DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54] Length = 121 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/99 (24%), Positives = 63/99 (63%), Gaps = 2/99 (2%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +S+L++++S++ + +++ T+ + + ++ +G++I+I F +F VKQ S Sbjct: 25 ENMNKSELIEALSQDVNIPHREAAAITNTVIDTMTEALAKGDSIEIRGFGSFVVKQYESY 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++K+ P+++ FK L++++ D++ +K Sbjct: 85 EGRNPKTGKKIKVKPKKLPFFKVGKDLREQV--DLKRKK 121 >gi|261749189|ref|YP_003256874.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497281|gb|ACX83731.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 97 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I E G R D+ + + T +I S GE + + F +F +K + ++G Sbjct: 1 MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 R++ + + I + FK + Sbjct: 61 RHISKDMSIVIPAHNIPAFKPA 82 >gi|195940565|ref|ZP_03085947.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. EC4024] Length = 74 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 39/71 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKI 75 RN QT +E+ I Sbjct: 61 RNPQTGKEITI 71 >gi|21672575|ref|NP_660642.1| integration host factor beta subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|2495248|sp|Q44654|IHFB_BUCAP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1448955|gb|AAC05430.1| integration host factor beta subunit [Buchnera aphidicola] gi|21623203|gb|AAM67853.1| integration host factor beta subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 93 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L + I+ ++ +S K V + I S +G+ I+I F TF + + SR+ Sbjct: 1 MTKSELFERIAERKAHISNKIIECAVKEMLEYISISLSKGKRIEIRGFGTFSLHYRSSRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++K++ R + FK L+ R Sbjct: 61 GRNPKTGKKIKLNERYIPYFKPGKQLRDR 89 >gi|254788366|ref|YP_003075795.1| DNA-binding protein HU [Teredinibacter turnerae T7901] gi|237686942|gb|ACR14206.1| DNA-binding protein HU [Teredinibacter turnerae T7901] Length = 93 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 44/84 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DLVK + L+R + V + ++ ++ RGE +++ +F V+ + + G N Sbjct: 3 KTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTGIN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + ++I + + FKA L+ Sbjct: 63 PQTGEALRIAAKNQIFFKAGKRLR 86 >gi|255690691|ref|ZP_05414366.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|260623721|gb|EEX46592.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] Length = 93 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ++++ G+ + + V + DS + G + + F +F VKQ+ +V Sbjct: 1 MTKADIVARVAQQTGVEKAVAMTVVEAFMETVKDSMIAGNDVFLRGFGSFVVKQRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIVIPAHSIPAFKPA 82 >gi|224373120|ref|YP_002607492.1| non-specific DNA-binding protein [Nautilia profundicola AmH] gi|223589367|gb|ACM93103.1| non-specific DNA-binding protein [Nautilia profundicola AmH] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++++ GLS+KD + + ++ G+ + F +F V + RV Sbjct: 1 MKKSELIAAVAEKSGLSKKDVNAVIDATIEAMEEALKAGKKVSFIGFGSFEVVTRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R TN+EVKI + V FK LK+ + Sbjct: 61 RVPGTNKEVKIPETKSVKFKVGKKLKELL 89 >gi|94502166|ref|ZP_01308664.1| DNA-binding protein HU [Oceanobacter sp. RED65] gi|94425691|gb|EAT10701.1| DNA-binding protein HU [Oceanobacter sp. RED65] Length = 76 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 38/74 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 + + + R + + I ++ G+ + + F TF VK++ +R GRN QT Q ++I + Sbjct: 2 IPKAAAGRALDATVDAITNALKEGDQVVLVGFGTFAVKERAARTGRNPQTGQPIEIAAAK 61 Query: 80 VVVFKASSILKKRI 93 V FK LK + Sbjct: 62 VPGFKPGKALKDAV 75 >gi|60681456|ref|YP_211600.1| putative histone-like DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|60492890|emb|CAH07665.1| putative histone-like DNA-binding protein [Bacteroides fragilis NCTC 9343] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 44/79 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+K ++ L+ K+++ V + N + ++ +R E++ + F TF +K + +R Sbjct: 1 MNKHDLIKKVALRGNLNAKEASAIVEVVMNAMVEAILREESVTLVGFGTFSIKMRKARNV 60 Query: 65 RNLQTNQEVKIDPRRVVVF 83 N T + + I R+VV F Sbjct: 61 LNPSTGENMVIPARKVVKF 79 >gi|124290|sp|P23303|IHFB_SERMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|152829|gb|AAA26557.1| integration host factor beta-subunit [Serratia marcescens] Length = 94 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDR 89 >gi|240128445|ref|ZP_04741106.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-93-1035] Length = 98 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 40/74 (54%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L KD V L + + S RG+ I+I F +F + + +R+GRN +T + V++ + Sbjct: 16 LLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKH 75 Query: 80 VVVFKASSILKKRI 93 V FK L++R+ Sbjct: 76 VPHFKPGKELRERV 89 >gi|332283861|ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7] gi|330427814|gb|AEC19148.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7] Length = 90 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ IS + LS+ D+ R + + + + + + F TF V ++ +R G Sbjct: 1 MNKTELIEHISTKADLSKADAGRALEAFIGAVKTTLKKKGTVTLVGFGTFAVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V F+ LK Sbjct: 61 RNPRTGEAIKIKKAKVPKFRPGKALK 86 >gi|313184943|gb|ADR50036.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184945|gb|ADR50037.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 4 TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57 T+T+SD+V IS L +K + F E+ + I+ SF TF V K Sbjct: 8 TVTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRK 67 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +KG RN QT + VK+ V F+ LK+R+ Sbjct: 68 RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|196228197|ref|ZP_03127064.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] gi|196227600|gb|EDY22103.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] Length = 92 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++LV+++ K G +S+ + R V + I +G+ +++ F TF V + +R Sbjct: 1 MNKAELVEAVQKSLGKDVSKAQAERSVEAVIEGIKSGLKKGKPVQLVGFGTFKVTNRKAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +G N +T +++KI + V F A LK ++ Sbjct: 61 MGINPKTGEKIKIKASKSVKFAAGKDLKSKL 91 >gi|260910484|ref|ZP_05917153.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] gi|260635430|gb|EEX53451.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] Length = 90 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I+ GLS+ DS + + I + V+G+ +++ F TF V ++ + VG Sbjct: 1 MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKGALVKGDKVQLVGFGTFSVNERPAHVG 60 Query: 65 RNLQTNQEVKI 75 N T Q++ I Sbjct: 61 VNPATKQKITI 71 >gi|84498303|ref|ZP_00997100.1| Histone-like bacterial DNA-binding protein [Janibacter sp. HTCC2649] gi|84381803|gb|EAP97686.1| Histone-like bacterial DNA-binding protein [Janibacter sp. HTCC2649] Length = 235 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ + K G SRK +T + + + I +G + I+ F TF ++ +R G Sbjct: 1 MNKGELVRELEKRLG-SRKAATEALDAVLDTIVREVTKGGKVGITGFGTFDRVERAARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN + V+I + F+A + K Sbjct: 60 RNPHSGASVRIPKSKAPRFRAGAAFK 85 >gi|292897978|ref|YP_003537347.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC 49946] gi|291197826|emb|CBJ44921.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC 49946] Length = 90 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 >gi|152979211|ref|YP_001344840.1| integration host factor, beta subunit [Actinobacillus succinogenes 130Z] gi|171704341|sp|A6VPK8|IHFB_ACTSZ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150840934|gb|ABR74905.1| integration host factor, beta subunit [Actinobacillus succinogenes 130Z] Length = 94 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++K+ +S K V + ++ S + I+I F +F + + R+ Sbjct: 1 MTKSELIELLAKKNPSISTKIVENSVKEILEQMSGSLENSDRIEIRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKCVPHFKAGKELKERV 90 >gi|83719600|ref|YP_440564.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264] gi|83653425|gb|ABC37488.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264] Length = 126 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+++++ F +F ++ +R G Sbjct: 35 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 94 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 95 RNPKTGETIKIPAAKTVKFTAGKAFK 120 >gi|329889861|ref|ZP_08268204.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] gi|328845162|gb|EGF94726.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL I+ E G S+ D+ + V +F I D+A G I ++ F F VK +R G Sbjct: 1 MNNSDLADKIAAEHGTSKADARKIVDAVFAAIADAAAGGSEIALNGFGKFKVKDSPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + +KI + + F + +K ++ Sbjct: 61 RNPATGETIKIAASKKLTFSPAKAVKDKL 89 >gi|83311280|ref|YP_421544.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82946121|dbj|BAE50985.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 92 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F TF V + +R G Sbjct: 1 MNKSELIAAVADGANMTKADAASAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTI 89 >gi|282601029|ref|ZP_05980488.2| integration host factor, beta subunit [Subdoligranulum variabile DSM 15176] gi|282570392|gb|EFB75927.1| integration host factor, beta subunit [Subdoligranulum variabile DSM 15176] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS L+ ++ + G++ + + + +F I D G+ + I+ F F ++++ ++ Sbjct: 1 MTRSQLITKVANDTGMTSGEVEKVMDCIFGTIGDVLKGGDKVTIAGFGRFEMRERQTKNF 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T K++P + FKAS LK+++ Sbjct: 61 TNPKTKVTSKLEPTAIPGFKASGRLKEKV 89 >gi|148555235|ref|YP_001262817.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148500425|gb|ABQ68679.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 40/83 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +D+ ++ E G+ + + R + I D+A +G+ + + F F V + +R GRN Sbjct: 4 ADIAGVVAAEQGIDKAAAKRVIDAALKAITDAAKKGDEVSLPGFGKFKVTDRPAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 T + I + V F A+ LK Sbjct: 64 ATGATLTIAASKKVSFTAAKALK 86 >gi|323136622|ref|ZP_08071703.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397939|gb|EFY00460.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 93 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E S+ + + + + I + +G+ +++ F TF VK++ + G Sbjct: 1 MNKLELVEHVANETETSKAAAAAAIDAVIDGITKALKKGDEVRLVGFGTFSVKKRAAGKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T +E+KI + FK + LK Sbjct: 61 RNPATGEEIKIPASKSARFKPGATLK 86 >gi|296282081|ref|ZP_06860079.1| integration host factor beta-subunit [Citromicrobium bathyomarinum JL354] Length = 93 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++++ L ++ + V F EI G I++ F F +++ +R Sbjct: 1 MIRSELLQKLAQDNPELRAQEVEQVVDIFFEEIAQRLAEGGRIELRGFGAFSTREREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + +RV FK ++ + D Sbjct: 61 GRNPRTGEAVDVPAKRVPYFKPGKEMRNALNPD 93 >gi|215778416|ref|YP_002261556.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] gi|208011461|emb|CAQ81925.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] Length = 91 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I++ LS++ +T + + I + G+ + + F TF V + +R G Sbjct: 1 MNKKELVWHIAESADLSQQRATATLNATVDIITTALKEGDDVALVGFGTFKVNPRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++I +VFKA LK+ + Sbjct: 61 RNPKTGDMIQIAASNALVFKAGKALKETL 89 >gi|261415246|ref|YP_003248929.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371702|gb|ACX74447.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327669|gb|ADL26870.1| DNA-binding protein HU [Fibrobacter succinogenes subsp. succinogenes S85] Length = 100 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%) Query: 5 ITRSDLVKSI--SKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + DL++++ +KE G+ S+ + R + + + I + +++ F TF VK + + Sbjct: 1 MNKQDLIEAVLANKEAGIESKAAAARAIDAVLDGIAAGIKKDGNVQLIGFGTFTVKSRAA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 R GRN QT +KI + V FKA + LK+ Sbjct: 61 RTGRNPQTGATIKIKASKTVGFKAGAALKE 90 >gi|110004904|emb|CAK99236.1| probable dna-binding protein hu2 [Spiroplasma citri] Length = 94 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +++ +L I+++F LS+ + +F+ I + V G+ + I+ F F V ++ +R Sbjct: 1 MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN T + +KI + FKA LK Sbjct: 61 DGRNPSTGETIKIPASKSAKFKAGKQLK 88 >gi|51473887|ref|YP_067644.1| integration host factor alpha subunit [Rickettsia typhi str. Wilmington] gi|81636348|sp|Q9AKA7|HLP_RICTY RecName: Full=Histone-like DNA-binding protein gi|13235499|emb|CAC33761.1| Integration host factor alpha-subunit [Rickettsia typhi] gi|51460199|gb|AAU04162.1| integration host factor alpha subunit [Rickettsia typhi str. Wilmington] Length = 95 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + ++ + G S V T+F+ I + A + + + + +F +F VKQK R Sbjct: 2 TITKNKISLMLNSKLGFSNNLCEEIVNTVFSNILEIA-KVQKLTLKNFGSFEVKQKKQRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I ++ + F S LK I MR Sbjct: 61 GINFHTKSPVMIASKKNLRFSPSEKLKALINKSMR 95 >gi|325983776|ref|YP_004296177.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] gi|325533295|gb|ADZ28015.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] Length = 93 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ ++ +T + L I ++ G +++ F TF V ++ SR G Sbjct: 1 MNKTELIEAVATRSQTTKTQTTALLNGLLEVIQETIASGNDVQLVGFGTFSVTERTSREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN T + + I ++VV FK L Sbjct: 61 RNPATGETITIPAKKVVKFKPGKAL 85 >gi|222108996|ref|YP_002551262.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84] gi|221727918|gb|ACM30968.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84] Length = 92 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + L++ + V ++F +I D+A+ G I SF F +K +R GR Sbjct: 3 TTNEIADKIAADQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 N T +KI + + F K + D + G Sbjct: 63 NPATGATIKIAASKKLTFAPG----KAVKDALNG 92 >gi|15828558|ref|NP_325918.1| DNA-binding protein HU [Mycoplasma pulmonis UAB CTIP] gi|14089500|emb|CAC13260.1| DNA-BINDING PROTEIN HU [Mycoplasma pulmonis] Length = 126 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T+ + ++ IS+ +S++D + ++ I +S + E + I TF K K +R Sbjct: 34 KTMTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAAR 93 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 G T +++ I +RVV FK + +K+ Sbjct: 94 EGIKFTTGEKILIPEKRVVKFKPTKYIKE 122 >gi|237738391|ref|ZP_04568872.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] gi|229420271|gb|EEO35318.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] Length = 91 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ ++ R + N I ++ G+ + I + F V +K RVGRN +T +E+ I ++ Sbjct: 18 SKAEAERKFEVILNTIEETLKAGDELNIIGWGKFEVVEKAERVGRNPKTGEEIVIPAKKT 77 Query: 81 VVFKASSIL 89 V FKA L Sbjct: 78 VKFKAGKTL 86 >gi|255015828|ref|ZP_05287954.1| putative histone-like protein [Bacteroides sp. 2_1_7] gi|256841777|ref|ZP_05547283.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|298376992|ref|ZP_06986946.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|256736671|gb|EEU49999.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|298265976|gb|EFI07635.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] Length = 91 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + +S L++ +SK G + K+ R++ N I R GE + I F + + + SR+ Sbjct: 1 MNKSQLIEELSKRVG-NDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + + + PR +V FK + L K I Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLLKEI 89 >gi|288799936|ref|ZP_06405395.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] gi|288333184|gb|EFC71663.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] Length = 93 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ GL +KD + V +L I DS + + E + + F +F +K + ++ Sbjct: 1 MTKADIINEIALSTGLQKKDVSVVVESLMGTIKDSLLNKKENVYLRGFGSFTIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + ID FK + Sbjct: 61 ARNILKNTTMTIDAHDFPSFKPA 83 >gi|171915587|ref|ZP_02931057.1| histone family protein DNA-binding protein [Verrucomicrobium spinosum DSM 4136] Length = 91 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++L++++ K G S++ ++ V + I + +++ F TF V ++ +R Sbjct: 1 MNKAELIEAVQKNLGGDTSKRAASDAVEAVLASISKGVAKTGTVQLIGFGTFKVAKRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + +KI + V F SS LK Sbjct: 61 TGRNPKTGEAMKIKASKTVRFVPSSALK 88 >gi|153805807|ref|ZP_01958475.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185] gi|149130484|gb|EDM21690.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185] Length = 90 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E +S+ D+ + + + ++ G+ + + F TF V ++ R G Sbjct: 1 MNKSELISAMAAESQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + I ++V FKA + L + Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAV 89 >gi|58979473|gb|AAW83401.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979475|gb|AAW83402.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979477|gb|AAW83403.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979479|gb|AAW83404.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979481|gb|AAW83405.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979483|gb|AAW83406.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979487|gb|AAW83408.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979489|gb|AAW83409.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979491|gb|AAW83410.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979493|gb|AAW83411.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979531|gb|AAW83430.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979533|gb|AAW83431.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979535|gb|AAW83432.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979537|gb|AAW83433.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979539|gb|AAW83434.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979541|gb|AAW83435.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979543|gb|AAW83436.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979545|gb|AAW83437.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979547|gb|AAW83438.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979549|gb|AAW83439.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979551|gb|AAW83440.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979555|gb|AAW83442.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979557|gb|AAW83443.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979559|gb|AAW83444.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979561|gb|AAW83445.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979563|gb|AAW83446.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979565|gb|AAW83447.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979567|gb|AAW83448.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979569|gb|AAW83449.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979575|gb|AAW83452.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979581|gb|AAW83455.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979589|gb|AAW83459.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979593|gb|AAW83461.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979601|gb|AAW83465.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979607|gb|AAW83468.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979609|gb|AAW83469.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979611|gb|AAW83470.1| DNA-binding protein HU [Campylobacter upsaliensis] Length = 98 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 42/80 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|253996687|ref|YP_003048751.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] gi|253983366|gb|ACT48224.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] Length = 90 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ G+S+ + R + I + +G+ + + F TF+V ++ +R G Sbjct: 1 MNKSELIDEIASAAGISKAAAGRALDATTAAITKAIKKGDLVTLIGFGTFYVGKREARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI F+A LK Sbjct: 61 RNPRTGETIKIQAANSPKFRAGKALK 86 >gi|120610349|ref|YP_970027.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|326316509|ref|YP_004234181.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588813|gb|ABM32253.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|323373345|gb|ADX45614.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 90 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + ++ + + +G + + F TF V ++ +R G Sbjct: 1 MNKSELIEQIATNADISKAAAARALESMIESVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALK 86 >gi|71083197|ref|YP_265916.1| integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1062] gi|91762373|ref|ZP_01264338.1| Integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1002] gi|71062310|gb|AAZ21313.1| Integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1062] gi|91718175|gb|EAS84825.1| Integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1002] Length = 96 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 I +S L+K ++ + +KD +F + EI + RG+ +++ F F + +R+ Sbjct: 3 IVKSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARI 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T ++V ++ + FK S + K++ +D Sbjct: 63 SRNPKTGEKVNTPEKKTIHFKMSKEMFKKLNND 95 >gi|311280174|ref|YP_003942405.1| integration host factor, beta subunit [Enterobacter cloacae SCF1] gi|308749369|gb|ADO49121.1| integration host factor, beta subunit [Enterobacter cloacae SCF1] Length = 94 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ + K V + + + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|302339671|ref|YP_003804877.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301636856|gb|ADK82283.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 117 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63 +T++++++ I ++ ++R D + LF E+ D+ + +++ F TF ++ +KG Sbjct: 15 LTKAEIIERIYEKHEVNRSDIHDVIDALFEELKDALQQDRVVELRGFGTFEIRTRKGRDR 74 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN +T + V ++ V VF+ LK+ I +RG D Sbjct: 75 ARNPKTGEIVPVNTHGVAVFRPGKELKQ-IAWPLRGENGGSGD 116 >gi|329890646|ref|ZP_08268989.1| integration host factor, beta subunit [Brevundimonas diminuta ATCC 11568] gi|328845947|gb|EGF95511.1| integration host factor, beta subunit [Brevundimonas diminuta ATCC 11568] Length = 96 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E L+ + R V + + ++ G +++ F F V+ + +R Sbjct: 1 MIKSELIEKLAAENLHLTHAEVERVVNVILGRMTETLSDGGRVELRGFGAFSVRSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK+ L++R+ Sbjct: 61 GRNPRTGETVEVPAKAVPFFKSGKELRERL 90 >gi|229821233|ref|YP_002882759.1| histone family protein DNA-binding protein [Beutenbergia cavernae DSM 12333] gi|229567146|gb|ACQ80997.1| histone family protein DNA-binding protein [Beutenbergia cavernae DSM 12333] Length = 93 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV +I+ + L++ + ++ L + + S +GE +K++ + ++ +R Sbjct: 2 SVNRTELVAAIADKASLTKVQADAALSALQDVLVTSLSKGETVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E++I V A S+LK + Sbjct: 62 GRNPRTGEEIQIPAGYGVKISAGSVLKSAV 91 >gi|315638696|ref|ZP_07893870.1| DNA-binding protein HU [Campylobacter upsaliensis JV21] gi|58979347|gb|AAW83338.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979399|gb|AAW83364.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979401|gb|AAW83365.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979403|gb|AAW83366.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979495|gb|AAW83412.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979497|gb|AAW83413.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979499|gb|AAW83414.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979501|gb|AAW83415.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979503|gb|AAW83416.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979505|gb|AAW83417.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979507|gb|AAW83418.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979509|gb|AAW83419.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979511|gb|AAW83420.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979513|gb|AAW83421.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979515|gb|AAW83422.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979517|gb|AAW83423.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979519|gb|AAW83424.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979521|gb|AAW83425.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979523|gb|AAW83426.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979525|gb|AAW83427.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979527|gb|AAW83428.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979529|gb|AAW83429.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979553|gb|AAW83441.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979577|gb|AAW83453.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979579|gb|AAW83454.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979583|gb|AAW83456.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979585|gb|AAW83457.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979587|gb|AAW83458.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979597|gb|AAW83463.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979603|gb|AAW83466.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979605|gb|AAW83467.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|315481320|gb|EFU71950.1| DNA-binding protein HU [Campylobacter upsaliensis JV21] Length = 98 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 42/80 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|299135887|ref|ZP_07029071.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] gi|298602011|gb|EFI58165.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] Length = 98 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 45/90 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K IT++ LV+ ++++ L+ K + F+ L + I ++ Sbjct: 1 MAKGITKTQLVRLLAEKLELTNKQTAAFLELLAETAVKETKKNGEFTIPGIGKLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +RVGRN QT + +KI + VV F+ + + K Sbjct: 61 ARVGRNPQTGEAIKIKAKTVVKFRVAKVAK 90 >gi|260770646|ref|ZP_05879577.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972] gi|260614372|gb|EEX39560.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972] gi|315178408|gb|ADT85322.1| DNA-binding protein HU [Vibrio furnissii NCTC 11218] Length = 90 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+KI V F A LK Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALK 86 >gi|237803593|ref|ZP_04591178.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025575|gb|EGI05631.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length = 90 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +RVG Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGKTLQIAAAKKPGFKAGKALKDAV 89 >gi|325275144|ref|ZP_08141117.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] gi|324099716|gb|EGB97589.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] Length = 101 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L I+++ L+++ + + + + + I A+ + + + F TF + +G+R G+N Sbjct: 3 KPELAAVIAEKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK L+ Sbjct: 62 PQTGQPVKIKASNTVAFKPGKNLR 85 >gi|153011966|ref|YP_001373178.1| histone family protein DNA-binding protein [Ochrobactrum anthropi ATCC 49188] gi|151563854|gb|ABS17349.1| histone family protein DNA-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 92 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E LS+ + V ++F +I ++A+ G I SF F +K+ R GR Sbjct: 3 TTNEIADKIASEQNLSKVQAKAIVESVFRQITEAALAGAETSIPSFGKFKLKETPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVF 83 N T +KI + + F Sbjct: 63 NPATGATIKIAAAKKLAF 80 >gi|254435518|ref|ZP_05049025.1| integration host factor, beta subunit [Nitrosococcus oceani AFC27] gi|207088629|gb|EDZ65901.1| integration host factor, beta subunit [Nitrosococcus oceani AFC27] Length = 96 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS +D V L + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 61 GRNPKTGDAVPLSSKYVPHFKPGKELRERV 90 >gi|203284151|ref|YP_002221891.1| HbbU protein [Borrelia duttonii Ly] gi|203287689|ref|YP_002222704.1| HbbU protein [Borrelia recurrentis A1] gi|201083594|gb|ACH93185.1| HbbU protein [Borrelia duttonii Ly] gi|201084909|gb|ACH94483.1| HbbU protein [Borrelia recurrentis A1] Length = 108 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V I + L +K V F E+ +S I+ SF TF + K+ Sbjct: 9 VTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG + RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104 >gi|83311122|ref|YP_421386.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82945963|dbj|BAE50827.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 117 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++ GLS+ + + F I + G+ +++ F +F V Q+ ++ G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + F A LK + Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAV 115 >gi|89901030|ref|YP_523501.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens T118] gi|89345767|gb|ABD69970.1| bacterial nucleoid protein Hbs [Rhodoferax ferrireducens T118] Length = 112 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ +TR + + + + +G ++ + F TF V ++ +RVG Sbjct: 23 VNKTELIEHIALNADISKAAATRALESAIGAVKITLKKGGSVSLVGFGTFAVGKRAARVG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 83 RNPRTGDAIKIKAAKVPKFRPGKALK 108 >gi|294053548|ref|YP_003547206.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293612881|gb|ADE53036.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 103 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+ D+V I ++ +K+ V + I ++ +G +++ +F F V+ + Sbjct: 1 MSNNLTKRDIVLDIYEKTDFPQKEVRETVQLTLDAIANALRQGRNVELRNFGVFEVQVRK 60 Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILK 90 SR+GRN + +V I R V+ FKA LK Sbjct: 61 SRIGRNPNKPETDVVIPTRAVIKFKAGKELK 91 >gi|198276416|ref|ZP_03208947.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM 17135] gi|313146782|ref|ZP_07808975.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|198270858|gb|EDY95128.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM 17135] gi|313135549|gb|EFR52909.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 93 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I++E G+ + +T V + +S + G + + F +F +KQ+ + Sbjct: 1 MTKADIIARIAQETGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFIIKQRAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I V FK + Sbjct: 61 RNISKNTTIVIPAHSVPAFKPA 82 >gi|126663449|ref|ZP_01734446.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] gi|126624397|gb|EAZ95088.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] Length = 91 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ G+++ + + + + + + +G + + F ++ V ++ +R G Sbjct: 1 MNKSELIDAMAASAGITKAAAKLALESFLSNVEGTLNKGGRVSLVGFGSWSVSKRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI + VV FKA + L+ + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAV 89 >gi|323526327|ref|YP_004228480.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|323383329|gb|ADX55420.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 94 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + I ++ V+G+ +++ F +F + +R G Sbjct: 1 MNKQELIDAVASATGSSKSIAGEAIDAVIGAITEAVVKGDTVQLIGFGSFSQGTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T +E+ I + V F A K + R Sbjct: 61 RNPATGEEISIAAAKTVKFTAGKGFKDAVNGGAR 94 >gi|225158968|ref|ZP_03725280.1| histone family protein DNA-binding protein [Opitutaceae bacterium TAV2] gi|224802463|gb|EEG20723.1| histone family protein DNA-binding protein [Opitutaceae bacterium TAV2] Length = 102 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+ ++V I ++ G +K+ V + I + G +++ +F V+++ Sbjct: 1 MPANLTKREIVLEIYEKTGFPQKEIVTSVQMTLDIIMRALSEGRNVELRNFGVLEVQRRK 60 Query: 61 SRVGRNL-QTNQEVKIDPRRVVVFKASSILKK 91 SR+GRN + EV I R VV FK+ ILK+ Sbjct: 61 SRIGRNPNKPEAEVVIPERAVVKFKSGKILKQ 92 >gi|262384108|ref|ZP_06077244.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301311014|ref|ZP_07216943.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|262295006|gb|EEY82938.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300831077|gb|EFK61718.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 91 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + +S L++ +SK G + K+ R++ N I R GE + I F + + + SR+ Sbjct: 1 MNKSQLIEELSKRVG-NDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + + + PR +V FK + L K I Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLVKEI 89 >gi|302847610|ref|XP_002955339.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f. nagariensis] gi|300259411|gb|EFJ43639.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f. nagariensis] Length = 186 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I+KE +++ +T+ +LFN + ++ G+ + + F TF + + + G Sbjct: 42 VGKAVLVDQIAKEAEITKAQATKAFDSLFNAVQEAVTSGKRVTVLGFGTFESRLRKEKNG 101 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I F+AS K+++ Sbjct: 102 RNPRTGETITIPAATAPAFRASVSFKEKV 130 >gi|284048950|ref|YP_003399289.1| histone family protein DNA-binding protein [Acidaminococcus fermentans DSM 20731] gi|283953171|gb|ADB47974.1| histone family protein DNA-binding protein [Acidaminococcus fermentans DSM 20731] Length = 91 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++ + L +KD+ + V + + ++ + +++ F TF + + +R G Sbjct: 1 MNKSELIAEVASKTALPKKDAEKAVNAFIDTVKEAVANKDKVQLIGFGTFEARVRNARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T + ++I V FKA K Sbjct: 61 KNPRTGETIEIAEANVPAFKAGKAFK 86 >gi|28870878|ref|NP_793497.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str. DC3000] gi|66044995|ref|YP_234836.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|71736986|ref|YP_273938.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|77459916|ref|YP_349423.1| nucleoid protein HU beta subunit [Pseudomonas fluorescens Pf0-1] gi|213968837|ref|ZP_03396978.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. tomato T1] gi|257483812|ref|ZP_05637853.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627507|ref|ZP_06460461.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649942|ref|ZP_06481285.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aesculi str. 2250] gi|289679418|ref|ZP_06500308.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. syringae FF5] gi|298486266|ref|ZP_07004329.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301384117|ref|ZP_07232535.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato Max13] gi|302059520|ref|ZP_07251061.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato K40] gi|302135029|ref|ZP_07261019.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187981|ref|ZP_07264654.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. syringae 642] gi|330808575|ref|YP_004353037.1| DNA-binding protein, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|22532107|gb|AAM97839.1|AF447727_1 DNA binding protein HU-beta [Pseudomonas syringae] gi|28854127|gb|AAO57192.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str. DC3000] gi|63255702|gb|AAY36798.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|71557539|gb|AAZ36750.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|77383919|gb|ABA75432.1| DNA-binding protein HU-beta [Pseudomonas fluorescens Pf0-1] gi|213926440|gb|EEB59994.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. tomato T1] gi|298159273|gb|EFI00331.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325364|gb|EFW81431.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. glycinea str. B076] gi|320327651|gb|EFW83659.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. glycinea str. race 4] gi|327376683|gb|AEA68033.1| Putative DNA-binding protein, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|330868372|gb|EGH03081.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878775|gb|EGH12924.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330882121|gb|EGH16270.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. glycinea str. race 4] gi|330889994|gb|EGH22655.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. mori str. 301020] gi|330939709|gb|EGH43004.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. pisi str. 1704B] gi|330959390|gb|EGH59650.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. maculicola str. ES4326] gi|330963317|gb|EGH63577.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. actinidiae str. M302091] gi|330972585|gb|EGH72651.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975099|gb|EGH75165.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985642|gb|EGH83745.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012682|gb|EGH92738.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331019232|gb|EGH99288.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 90 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +R+G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK+ + Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89 >gi|319789020|ref|YP_004150653.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] gi|317113522|gb|ADU96012.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] Length = 97 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHV 56 M+K ++L + +S++ G ++ + T E+ D V GE +KI F F++ Sbjct: 1 MTKYELVNELRQRVSRKLG--KQVRKELIETTVEELLDLIVFKVFGGEEVKIRGFGKFYL 58 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 K+ R RN +T + V + PR+V FK S Sbjct: 59 KEASPRRARNPKTGEVVNVPPRKVFAFKPS 88 >gi|83311178|ref|YP_421442.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82946019|dbj|BAE50883.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 92 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F TF V + +R G Sbjct: 1 MNKSELINAVADSAKMTKADAGNAIDAVFAAITTAMKSGDDVRLVGFGTFSVSARPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTI 89 >gi|160883569|ref|ZP_02064572.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483] gi|156110982|gb|EDO12727.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483] Length = 88 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + LS ++T V + I ++ +GE++ + F +F ++++ +R G Sbjct: 1 MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVIQERKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S +K Sbjct: 61 HNPATGGSMVIPSKRQVKFRPGSKMK 86 >gi|146277321|ref|YP_001167480.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|146278163|ref|YP_001168322.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145555562|gb|ABP70175.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145556404|gb|ABP71017.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 90 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 8/86 (9%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICD---SAVR-GEAIKISSFATFHVKQKG 60 + +SDLV +++++ G+SR V T+ +E D +AVR G++I ++ F +F + + Sbjct: 4 LNKSDLVSTVAEKVGVSRLA----VQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRP 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN +T + V I + F S Sbjct: 60 ARTGRNPRTGEAVAIPASTSIGFTPS 85 >gi|77163719|ref|YP_342244.1| integration host factor, beta subunit [Nitrosococcus oceani ATCC 19707] gi|76882033|gb|ABA56714.1| Integration host factor, beta subunit [Nitrosococcus oceani ATCC 19707] Length = 113 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+L++ ++ ++ LS +D V L + + +GE I+I F +F + + R Sbjct: 17 VMTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPR 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 77 SGRNPKTGDAVPLSSKYVPHFKPGKELRERV 107 >gi|91228710|ref|ZP_01262623.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus 12G01] gi|262392956|ref|YP_003284810.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25] gi|269965869|ref|ZP_06179963.1| DNA-binding protein HU [Vibrio alginolyticus 40B] gi|91187736|gb|EAS74055.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus 12G01] gi|262336550|gb|ACY50345.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25] gi|269829533|gb|EEZ83773.1| DNA-binding protein HU [Vibrio alginolyticus 40B] Length = 90 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESV 89 >gi|260592146|ref|ZP_05857604.1| DNA-binding protein HU [Prevotella veroralis F0319] gi|260535780|gb|EEX18397.1| DNA-binding protein HU [Prevotella veroralis F0319] Length = 93 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 5/97 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + + I DS + + E + + F +F +K + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMDSIKDSLLGKKENVYLRGFGSFIIKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N + I FK + K ++DM+ + Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMKNK 93 >gi|228469565|ref|ZP_04054558.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] gi|228308915|gb|EEK17590.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] Length = 90 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K+++ + L++KD+ + I + +GE + + F +F+V Q+ +R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N ++ + + I + + FK S+ L Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >gi|167036347|ref|YP_001671578.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] gi|166862835|gb|ABZ01243.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] Length = 101 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L I+++ L+++ + + + + + I A+ + + + F TF + +G+R G+N Sbjct: 3 KPELAAVIAEKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK LK Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLK 85 >gi|333030022|ref|ZP_08458083.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] gi|332740619|gb|EGJ71101.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] Length = 94 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ + + + + + DS V E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKVTALNTIEAFMDVVKDSLVNDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK S Sbjct: 61 RNISKNTTIIIPEHNIPAFKPS 82 >gi|325982744|ref|YP_004295146.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] gi|325532263|gb|ADZ26984.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] Length = 90 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+K +S+ + + I + + E++ + F TF V + +R G Sbjct: 1 MNKSELIEAIAKSAKISKASAGSALDGALTAIKGALKKNESVTLVGFGTFKVGTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F A LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFSAGKALK 86 >gi|198284191|ref|YP_002220512.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248712|gb|ACH84305.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 93 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 34/69 (49%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + RF+ I E I I T H + +R GRNL T ++++I RRVV FK Sbjct: 23 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 82 Query: 85 ASSILKKRI 93 A+ + R+ Sbjct: 83 ATKTFQDRV 91 >gi|295085994|emb|CBK67517.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens XB1A] Length = 95 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 46/82 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ +S+E G+ R+ + + + D+ R ++ + F TF +K++ ++ Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 +N+Q + + I R+V FK S Sbjct: 61 QNIQQHTTICIPARKVPHFKPS 82 >gi|118580329|ref|YP_901579.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503039|gb|ABK99521.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 88 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 40/86 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++ V +I+ E + + + V D G+ I F TF V ++ +R G Sbjct: 1 MTKAEFVAAIAAELDVPKNVAAETVEAFLKVTTDLLKAGDKITFPGFGTFGVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I + F A LK Sbjct: 61 RNPQTGAEIQIAASKSGKFTAGKNLK 86 >gi|319776106|ref|YP_004138594.1| Integration host factor beta-subunit [Haemophilus influenzae F3047] gi|317450697|emb|CBY86917.1| Integration host factor beta-subunit [Haemophilus influenzae F3047] Length = 94 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S K+ L K+ V + I S +G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T V + + V FKA LK Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELK 87 >gi|167897237|ref|ZP_02484639.1| putative bacterial nucleoid DNA-binding protein [Burkholderia pseudomallei 7894] Length = 90 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ +++K L++ + + V + + I + + +S F TF + + +R G Sbjct: 1 MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + ++I + V FK LK Sbjct: 61 RNPATGEAIEIAASKAVKFKPGKALK 86 >gi|226941262|ref|YP_002796336.1| HupB1 [Laribacter hongkongensis HLHK9] gi|226716189|gb|ACO75327.1| HupB1 [Laribacter hongkongensis HLHK9] Length = 89 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/86 (20%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + + + + + ++ +G+ + + F +F+V ++ R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I + F+ LK Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALK 86 >gi|148550580|ref|YP_001260019.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148502999|gb|ABQ71252.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 92 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL ++ G ++ D+ + V +F I D+A +GE + ++ F F VK +R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + +KI + + F + +K R+ Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRL 90 >gi|291514301|emb|CBK63511.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 96 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+ + G+ + + V I ++ + GE + + F +F VK++ +V Sbjct: 1 MTKAELVALITHQTGVEKTAAEAVVEAFMRNIKETMIAGEDVFLRGFGSFIVKERAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK S + Sbjct: 61 RNITKNTTMVIPAHSIPAFKPSKVF 85 >gi|56476801|ref|YP_158390.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum aromaticum EbN1] gi|56312844|emb|CAI07489.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum aromaticum EbN1] Length = 104 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L +D+ V + + ++ +G I+I F +F + RV Sbjct: 1 MTKSELIDRLAQRFPQLVARDAEEAVKVILGTMTNALTQGGRIEIRGFGSFSSSYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + + V FK+ L++R+ Sbjct: 61 GRNPKSGETVHVSGKYVPHFKSGKELRERV 90 >gi|46202642|ref|ZP_00208599.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ G ++ D+ + +F I + G+ +++ F +F + + ++ G Sbjct: 1 MNKADLVSKVAELAGCTKADADKVTDAVFAAITSALKVGDEVRLVGFGSFSITNRAAKDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + F A LK + Sbjct: 61 RNPRTGATIKIAASKAPKFSAGKALKDAV 89 >gi|224015517|ref|XP_002297410.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220967911|gb|EED86280.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 85 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 44/85 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ V +++++ G+++ +S ++ + N I G+ I + F TF + + +R GRN Sbjct: 1 KAEFVSAVAEKTGMTKAESEVALSAVLNVIATEVAAGKRISLPGFGTFKLNYRAARKGRN 60 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91 +T E+ I F AS K+ Sbjct: 61 PKTGDEIDIKASYSPSFSASKTFKE 85 >gi|251792147|ref|YP_003006867.1| integration host factor subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533534|gb|ACS96780.1| integration host factor, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 94 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + K + K V + ++ GE I++ F +F + + R+ Sbjct: 1 MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK++ + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLEAKCVPYFKAGKELRERV 90 >gi|85375322|ref|YP_459384.1| integration host factor beta-subunit [Erythrobacter litoralis HTCC2594] gi|84788405|gb|ABC64587.1| integration host factor beta-subunit [Erythrobacter litoralis HTCC2594] Length = 92 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+++++++ L ++ + V F+EI V G +++ F F +++ +R Sbjct: 1 MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + V + +RV FK ++ Sbjct: 61 GRNPRTGEPVSVPAKRVPYFKPGKEMR 87 >gi|294670876|ref|ZP_06735732.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307363|gb|EFE48606.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 104 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISKEFG------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ F L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAQKNGTHLLAKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R GRN +T +V + + V FK L++R+ Sbjct: 61 RPARQGRNPKTGDKVSVPEKYVPHFKPGKELRERV 95 >gi|257459443|ref|ZP_05624552.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268] gi|257442868|gb|EEV18002.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268] Length = 98 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 44/83 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D ++ ++ + GLS+KD+ V + I + V+G+ I F +F + ++ +R G+ Sbjct: 3 KADFIQVVADKAGLSKKDTVNVVDSALEAIKELLVKGDDISFIGFGSFGIAERAAREGKV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSIL 89 TN+ K +VV FK L Sbjct: 63 PGTNRTYKSPATKVVKFKVGKQL 85 >gi|46202467|ref|ZP_00208527.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 92 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F TF V + +R G Sbjct: 1 MNKSELIAAVADGAKMTKADAGNAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKALTIAASKSAKFTAGKSLKDTI 89 >gi|304321185|ref|YP_003854828.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503] gi|303300087|gb|ADM09686.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503] Length = 95 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 3/89 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA---IKISSFATFHVKQKGS 61 +++++ + +++ +S ++ R V +F EI R + I +F TF + ++ + Sbjct: 1 MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R GRN +T +E+KI + + F+ SS LK Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLK 89 >gi|126661383|ref|ZP_01732446.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|126617341|gb|EAZ88147.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] Length = 91 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LVK+I+ E G + T+ + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N QT + + I + F A K+++ Sbjct: 61 KNPQTGESLTIPATTIPAFSAGKAFKEKV 89 >gi|107101236|ref|ZP_01365154.1| hypothetical protein PaerPA_01002269 [Pseudomonas aeruginosa PACS2] Length = 63 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G+++ + F TF VK++ +R GRN QT + +KI ++ FKA LK Sbjct: 12 GDSVVLVGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALK 59 >gi|28899685|ref|NP_799290.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633] gi|260364000|ref|ZP_05776734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] gi|260878153|ref|ZP_05890508.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] gi|260897884|ref|ZP_05906380.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|28807937|dbj|BAC61174.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633] gi|308085528|gb|EFO35223.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|308090217|gb|EFO39912.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] gi|308115538|gb|EFO53078.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] Length = 91 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T E++I V F A LK+ D Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKEACND 91 >gi|269123561|ref|YP_003306138.1| histone family protein DNA-binding protein [Streptobacillus moniliformis DSM 12112] gi|268314887|gb|ACZ01261.1| histone family protein DNA-binding protein [Streptobacillus moniliformis DSM 12112] Length = 93 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ V+ +K G ++K S V + + V+GE ++ + +F V+++ R G Sbjct: 1 MSKKGFVEEYAKLTGETKKRSEELVNAFLETVENLVVKGEDVQFVGWGSFKVQERKEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +E+KI ++V+ FK +++ Sbjct: 61 INPKTQKEIKIPAKKVLKFKVGKKFAEKV 89 >gi|89067289|ref|ZP_01154802.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516] gi|89046858|gb|EAR52912.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516] Length = 95 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K ++ + + N I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGSDKKTASAALDAVTNVITKEVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T +++K D +VV + LK Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALK 90 >gi|296116536|ref|ZP_06835146.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295976748|gb|EFG83516.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 95 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV ++++ L++ + V +F I + G+ +++ F TF + Sbjct: 1 MEKPLNKQELVAAVAENADLAKAKAGEVVDAVFGAIEKALSNGQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + GRN +T +E+ I V FK LK+ + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAV 93 >gi|124007394|ref|ZP_01692101.1| DNA-binding protein HU [Microscilla marina ATCC 23134] gi|123987227|gb|EAY26967.1| DNA-binding protein HU [Microscilla marina ATCC 23134] Length = 105 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ I+++ G+ + V F I +S GE I + F +F K++ +++ Sbjct: 1 MTKAEVISEIAEKTGVEKDKVQITVEAFFKVIQNSMENGENIYVRGFGSFINKKRATKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N+ + I V FK S + +RI + + Sbjct: 61 RNISKNKAMTIPEHYVPSFKPSKVFIERIKNSAK 94 >gi|50365017|ref|YP_053442.1| histone-like DNA-binding protein [Mesoplasma florum L1] gi|50363573|gb|AAT75558.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1] Length = 90 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ I +S+ + V +LF+ I + G + I+ F F + ++ +R G Sbjct: 1 MTKKDLINEIIANENISKVECEAVVNSLFDLIIEELSSGNEVSIAGFGKFAISERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T ++ I + FKA+ LK+++ Sbjct: 61 INPSTGDKISIAASKSAKFKAAKQLKEKL 89 >gi|269214903|ref|ZP_06158902.1| integration host factor subunit beta [Neisseria lactamica ATCC 23970] gi|269208725|gb|EEZ75180.1| integration host factor subunit beta [Neisseria lactamica ATCC 23970] Length = 80 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 37/63 (58%) Query: 31 TLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +L + + S RG+ I+I F +F + + +R+GRN +T + V++ + V FK L+ Sbjct: 9 SLGDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELR 68 Query: 91 KRI 93 +R+ Sbjct: 69 ERV 71 >gi|198449285|ref|YP_002221439.1| DNA binding protein HU-beta [Burkholderia phage KS10] gi|206559950|ref|YP_002230714.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia J2315] gi|197725446|gb|ACH72942.1| gp23 [Burkholderia phage KS10] gi|198035991|emb|CAR51884.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia J2315] Length = 90 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ +++K L++ + + V + N I + +S F TF V + +R G Sbjct: 1 MNKSQLIDAVAKNAELTKAQAAQSVEAVLNAIQLGLQEDGDVALSGFGTFAVAARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I + V FK LK + Sbjct: 61 RNPATGESIQIAASKAVKFKPGKALKDAV 89 >gi|223940629|ref|ZP_03632472.1| histone family protein DNA-binding protein [bacterium Ellin514] gi|223890710|gb|EEF57228.1| histone family protein DNA-binding protein [bacterium Ellin514] Length = 119 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ DLV IS E GL ++ V + I ++ +G+ +++ +F F VK + +R+ Sbjct: 2 TMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKARI 61 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93 GRN +V I R VV FK ++ + Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMRAEV 92 >gi|241589902|ref|YP_002979927.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|240868614|gb|ACS66273.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] Length = 94 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DL K+I+ S R++ + D+ G+ ++I F TF ++ +R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +E+++ V F A S L++ + Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAV 89 >gi|221632837|ref|YP_002522059.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159] gi|221156064|gb|ACM05191.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159] Length = 92 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 48/87 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDL+K +++ + V +F I ++ +GE + I+ F TF V ++ R GRN Sbjct: 3 KSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +TN+ ++I RR F+ + LK+ + Sbjct: 63 PRTNEPIEIPARRSPSFRPGTQLKRAV 89 >gi|145590204|ref|YP_001156801.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048610|gb|ABP35237.1| HU family DNA-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 106 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + +S+ + + + + I + +G+++++ F TF ++ +R+G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIDTIIKAVTKGDSVQLIGFGTFASGKRAARMG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFK 98 >gi|67458593|ref|YP_246217.1| integration host factor alpha-subunit [Rickettsia felis URRWXCal2] gi|75536941|sp|Q4UN06|HLP_RICFE RecName: Full=Histone-like DNA-binding protein gi|67004126|gb|AAY61052.1| Integration host factor alpha-subunit [Rickettsia felis URRWXCal2] Length = 95 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F I + A + + + + +F +F VKQK R Sbjct: 2 TITKEKIATMLSSKLGFSNNLCEEIVNTVFFNILEIA-KEQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N T + I+ ++ + F S+ LK I Sbjct: 61 GINFHTKSPIIIESKKNLRFIPSTKLKALI 90 >gi|320096006|ref|ZP_08027619.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str. F0338] gi|319977077|gb|EFW08807.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str. F0338] Length = 93 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I++ L++ + + + + +S +GE +K++ + ++ +R Sbjct: 2 SVNRTELVAQIAERANLTKVQADAALGAFQDVLVESLSKGEPVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGFGVKLSAGSTLKKAV 91 >gi|301629967|ref|XP_002944103.1| PREDICTED: DNA-binding protein HU-beta-like [Xenopus (Silurana) tropicalis] Length = 139 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G+ + + F TF V ++ +R G Sbjct: 50 VNKTELIEHIATHADISKAAAARALESTIEAVKKTLKKGDTVSLVGFGTFAVGKRAARTG 109 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 110 RNPRTGATIKIKAAKVPKFRPGKALK 135 >gi|260062638|ref|YP_003195718.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] gi|88784205|gb|EAR15375.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] Length = 90 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVESSLKKGNRVSLVGFGSWSVSRRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN T + + I + VV FKA S L Sbjct: 61 RNPSTGKTIHIPAKNVVKFKAGSEL 85 >gi|218264143|ref|ZP_03478035.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii DSM 18315] gi|218222261|gb|EEC94911.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii DSM 18315] Length = 99 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I+K+ G ++ V + + + G + + F +F +K + +V Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 RN+ N + I + FK S + DM K NKD Sbjct: 61 RNISQNTTIVIPAHSIPAFKPS-----KAFADMVNGKNNKD 96 >gi|253999167|ref|YP_003051230.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|313201269|ref|YP_004039927.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] gi|253985846|gb|ACT50703.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|312440585|gb|ADQ84691.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] Length = 90 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+K G+S+ + R + + + +G+ + + F +F+V ++ +R G Sbjct: 1 MNKSELIDEIAKAAGISKAAAGRSLDATTAAVTKALKKGDIVTLIGFGSFYVGKRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI F+A LK Sbjct: 61 RNPRTGTTIKIKAANSPKFRAGKALK 86 >gi|226329063|ref|ZP_03804581.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198] gi|225202249|gb|EEG84603.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198] Length = 66 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 42 RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +G+ + + F TF V+ + +R GRN QT +E++I+ +V F+A LK Sbjct: 13 KGDDVALVGFGTFTVRDRAARTGRNPQTGKEIQIEAAKVPAFRAGKGLK 61 >gi|218131132|ref|ZP_03459936.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM 20697] gi|217986652|gb|EEC52986.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM 20697] Length = 59 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G I I F TF VK+K R+ N T Q + + P+ V+ +K S++LK Sbjct: 8 GNVISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLK 55 >gi|167763122|ref|ZP_02435249.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC 43183] gi|167699462|gb|EDS16041.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC 43183] Length = 59 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G I I F TF VK+K R+ N T Q + + P+ V+ +K S++LK Sbjct: 8 GNMISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLK 55 >gi|256397147|ref|YP_003118711.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] gi|256363373|gb|ACU76870.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] Length = 232 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+++++ + S+KD+ V + + I S G + I+ F +F ++ +R Sbjct: 1 MNKAQLIEAVADKLAASKKDAGDAVDAVLDAIIASVASGTKVSITGFGSFEKVKRPARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ FKA K + D Sbjct: 61 RNPRTGESVKVKASSAPKFKAGQGFKDMVNGD 92 >gi|156972573|ref|YP_001443480.1| DNA-binding protein [Vibrio harveyi ATCC BAA-1116] gi|156524167|gb|ABU69253.1| hypothetical protein VIBHAR_00213 [Vibrio harveyi ATCC BAA-1116] Length = 101 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 12 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK+ + Sbjct: 72 RNPKTGDEIQIAAANVPAFVAGKALKESV 100 >gi|145593811|ref|YP_001158108.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] gi|145303148|gb|ABP53730.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] Length = 237 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G RK ++ + + E+ + +GE + I+ F F + +G+R Sbjct: 18 VNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 76 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+ + K+ + Sbjct: 77 RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105 >gi|227824814|ref|ZP_03989646.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21] gi|226905313|gb|EEH91231.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21] Length = 91 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++ + + +KD+ + V + + ++ + + +++ F TF + + +R G Sbjct: 1 MNKSELISEVASKTAMPKKDAEKAVNAFIDTVKEAIAQKDKVQLIGFGTFEARVRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T + +KI V FKA K Sbjct: 61 KNPRTGETIKIKKATVPAFKAGKAFK 86 >gi|328954010|ref|YP_004371344.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328454334|gb|AEB10163.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 90 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ I+ + + D R + + D + I ++ F TF V ++ R G Sbjct: 1 MTKGELISQIAVAGQVKKADVERTLNAFIKTMVDILQQQGRISLAGFGTFTVTERREREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI +VV FK LK I Sbjct: 61 RNPQTGEPIKIAATKVVKFKPGKSLKDTI 89 >gi|302035785|ref|YP_003796107.1| transcriptional dual regulator HU-alpha [Candidatus Nitrospira defluvii] gi|300603849|emb|CBK40181.1| Transcriptional dual regulator HU-alpha [Candidatus Nitrospira defluvii] Length = 90 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ ++ G+++ +T + + S +G+ + + +F TF + ++ +R+G Sbjct: 1 MTKEELIAKMANSAGITKVAATVALEAFTGAVTTSLKKGKRVTLVNFGTFTISKRKARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI R+ F A LK + Sbjct: 61 RNPRTGEALKIPAARIPKFSAGKELKAAV 89 >gi|154149063|ref|YP_001406367.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter hominis ATCC BAA-381] gi|153805072|gb|ABS52079.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter hominis ATCC BAA-381] Length = 107 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 50/89 (56%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ +++++++ G ++K +T V + I D V+G++I F +F + ++ +R G+ Sbjct: 3 KAEFIQAVAEKTGSTKKVATEVVDSALEVISDVLVKGDSISFIGFGSFGLAERAAREGKV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 TN+ K +VV FK LK+ + + Sbjct: 63 PGTNRTYKSPATKVVKFKVGKQLKEAVAE 91 >gi|91200990|emb|CAJ74047.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 103 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 48/91 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T T+ DL + I+++ + + + +EI +G I++ F F ++Q+ +R Sbjct: 2 QTTTKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + VVVFK ++++++ Sbjct: 62 KARNPRTGEVAFVPSKNVVVFKVGKLMREKV 92 >gi|183602609|ref|ZP_02963974.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis HN019] gi|219683651|ref|YP_002470034.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis AD011] gi|241190683|ref|YP_002968077.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196089|ref|YP_002969644.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218250|gb|EDT88896.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis HN019] gi|219621301|gb|ACL29458.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis AD011] gi|240249075|gb|ACS46015.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250643|gb|ACS47582.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178420|gb|ADC85666.1| DNA-binding protein HU [Bifidobacterium animalis subsp. lactis BB-12] gi|295793672|gb|ADG33207.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis V9] Length = 93 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV IS++ GL++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVAKISQKSGLTKAQAEAAVNAFRDVFIEAMKNGEGLKLTGLLSAERVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + ++I V A S+LKK + + Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAVSE 93 >gi|15616918|ref|NP_240131.1| integration host factor beta-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681672|ref|YP_002468058.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682227|ref|YP_002468611.1| integration host factor beta-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471361|ref|ZP_05635360.1| integration host factor subunit beta [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132945|sp|P57394|IHFB_BUCAI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803529|sp|B8D999|IHFB_BUCA5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803530|sp|B8D7K1|IHFB_BUCAT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|25294346|pir||A84966 integration host factor beta-subunit [imported] - Buchnera sp. (strain APS) gi|10038982|dbj|BAB13017.1| integration host factor beta-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621960|gb|ACL30116.1| integration host factor beta-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624515|gb|ACL30670.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086045|gb|ADP66127.1| integration host factor subunit beta [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086618|gb|ADP66699.1| integration host factor subunit beta [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087201|gb|ADP67281.1| integration host factor subunit beta [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087726|gb|ADP67805.1| integration host factor subunit beta [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 94 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L + I+++ +S K R + + S G+ I+I F +F + + SR+ Sbjct: 1 MIKSELFERIAEQKINISNKMIERAAKEMLEHMIISLANGKRIEIRGFGSFSLHYRSSRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T + VK++ + V FK L+ R Sbjct: 61 GRNPKTGKSVKLNEKYVPYFKPGKKLRDR 89 >gi|229591359|ref|YP_002873478.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25] gi|312961786|ref|ZP_07776284.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens WH6] gi|213521162|gb|ACJ50519.1| DNA-binding protein HU-beta [Pseudomonas fluorescens] gi|229363225|emb|CAY50308.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25] gi|256556955|gb|ACU83577.1| DNA-binding protein HU-beta [uncultured bacterium HF130_AEPn_2] gi|311284045|gb|EFQ62628.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens WH6] Length = 90 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +R G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + FKA LK+ + Sbjct: 61 RNPQTGKALQIAAAKKPGFKAGKALKEAV 89 >gi|238789316|ref|ZP_04633103.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC 33641] gi|238722648|gb|EEQ14301.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC 33641] Length = 94 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGTKVELDGKYVPHFKPGKELRDR 89 >gi|71900575|ref|ZP_00682702.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|71729632|gb|EAO31736.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] Length = 69 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 37/62 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ +G+++ + F TF V+ + R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60 Query: 65 RN 66 RN Sbjct: 61 RN 62 >gi|313185145|gb|ADR50137.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|299147625|ref|ZP_07040689.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|298514412|gb|EFI38297.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] Length = 88 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + LS ++T V + I ++ +GE++ + F +F V+++ +R G Sbjct: 1 MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVVQERKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S ++ Sbjct: 61 HNSATGGSMLIPAKRQVKFRPGSKMR 86 >gi|218666551|ref|YP_002426854.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518764|gb|ACK79350.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 192 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 E I I T H + +R GRNL T ++++I RRVV FKA+ + R+ Sbjct: 140 AEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFKATKTFQDRV 190 >gi|302035809|ref|YP_003796131.1| integration host factor subunit beta [Candidatus Nitrospira defluvii] gi|300603873|emb|CBK40205.1| Integration host factor, beta subunit [Candidatus Nitrospira defluvii] Length = 92 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ +++ +S++ L+++ + V T+F+ I DS G +I F +F ++ + + Sbjct: 1 MTKAQIIERVSEQVTTLTKRQAEIVVNTIFDCIRDSLRNGNKTEIRGFGSFRLRARRMKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN +T V + +RV FKA LK+ Sbjct: 61 GRNPKTGATVAVPAKRVPFFKAGKELKE 88 >gi|223039759|ref|ZP_03610044.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter rectus RM3267] gi|222878951|gb|EEF14047.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter rectus RM3267] Length = 100 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 46/88 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D +++++++ GLS+KDS + V I + V G+++ F TF + +R R Sbjct: 3 KADFIQAVAEKAGLSKKDSLKVVDAALEVIESALVAGDSVSFIGFGTFGTADRAARKARV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIM 94 T + + + + V FK LK+ ++ Sbjct: 63 PGTKKVIDVPASKAVKFKVGKKLKEAVV 90 >gi|258620637|ref|ZP_05715674.1| DNA-binding protein HU [Vibrio mimicus VM573] gi|258624505|ref|ZP_05719449.1| DNA-binding protein HU [Vibrio mimicus VM603] gi|262163814|ref|ZP_06031554.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223] gi|262172622|ref|ZP_06040300.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451] gi|262404997|ref|ZP_06081549.1| DNA-binding protein HU-alpha [Vibrio sp. RC586] gi|258583202|gb|EEW08007.1| DNA-binding protein HU [Vibrio mimicus VM603] gi|258587152|gb|EEW11864.1| DNA-binding protein HU [Vibrio mimicus VM573] gi|261893698|gb|EEY39684.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451] gi|262027794|gb|EEY46459.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223] gi|262348836|gb|EEY97977.1| DNA-binding protein HU-alpha [Vibrio sp. RC586] Length = 90 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V F A LK I Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89 >gi|224531945|ref|ZP_03672577.1| DNA-binding protein HU [Borrelia valaisiana VS116] gi|1280583|gb|AAC73090.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280585|gb|AAC73091.1| histone-like protein HBbu [Borrelia burgdorferi] gi|89145740|gb|ABD62059.1| Hbb [Borrelia valaisiana] gi|89145742|gb|ABD62060.1| Hbb [Borrelia valaisiana] gi|186966720|gb|ACC96221.1| histone-like protein HBbu [Borrelia sp. QSDS4] gi|186966722|gb|ACC96222.1| histone-like protein HBbu [Borrelia sp. QTMP2] gi|186966724|gb|ACC96223.1| histone-like protein HBbu [Borrelia sp. QSYSP4] gi|186966726|gb|ACC96224.1| histone-like protein HBbu [Borrelia sp. QSYSP3] gi|186966728|gb|ACC96225.1| histone-like protein HBbu [Borrelia sp. QLZSP1] gi|224511410|gb|EEF81816.1| DNA-binding protein HU [Borrelia valaisiana VS116] gi|313185123|gb|ADR50126.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185125|gb|ADR50127.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185129|gb|ADR50129.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185131|gb|ADR50130.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185133|gb|ADR50131.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185135|gb|ADR50132.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185137|gb|ADR50133.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185139|gb|ADR50134.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185141|gb|ADR50135.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185147|gb|ADR50138.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185149|gb|ADR50139.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|253570783|ref|ZP_04848191.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|251839732|gb|EES67815.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] Length = 95 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 46/82 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ +S+E G+ R+ + + + D+ R ++ + F TF +K++ ++ Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 +N+Q + + I R++ FK S Sbjct: 61 QNIQQHTTICIPARKIPHFKPS 82 >gi|260911737|ref|ZP_05918313.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634162|gb|EEX52276.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 96 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 46/85 (54%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + ++++ G ++ + V + +E+ G+ I I F TF VK++ RV N Sbjct: 5 EFITELAQQTGYTQSVTQSLVRNIIDEMAVRFDEGDTISIPGFGTFEVKKRLERVVVNPS 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T Q + + P+ V+ F+ ++ +K+R+ Sbjct: 65 TQQRMLVPPKLVLNFRPTASIKERL 89 >gi|153835064|ref|ZP_01987731.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|153838911|ref|ZP_01991578.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810] gi|260902149|ref|ZP_05910544.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|269959588|ref|ZP_06173969.1| DNA-binding protein HU [Vibrio harveyi 1DA3] gi|148868460|gb|EDL67566.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|149747619|gb|EDM58543.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810] gi|269835646|gb|EEZ89724.1| DNA-binding protein HU [Vibrio harveyi 1DA3] gi|308110155|gb|EFO47695.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|328471094|gb|EGF42000.1| DNA-binding protein [Vibrio parahaemolyticus 10329] Length = 90 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESV 89 >gi|332882318|ref|ZP_08449946.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679702|gb|EGJ52671.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 106 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 49/97 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +++++ GL++ ++ + + + + + I + F +F VKQK +R G Sbjct: 1 MNKKELCNALAEKTGLTKTEAQKAFNAVIEIVANEMKKNGRITLIGFGSFSVKQKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 N + + I ++VV FK S L + RGRK Sbjct: 61 MNPTSFAPIDIPAKKVVNFKPSIYLNHLLNVKKRGRK 97 >gi|329963576|ref|ZP_08301055.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328528565|gb|EGF55536.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 59 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G I I F TF VK+K R+ N T Q + + P+ V+ +K S++LK Sbjct: 8 GNVISIQGFGTFEVKKKAERISVNPTTRQRMLVPPKLVLTYKPSTLLK 55 >gi|294776170|ref|ZP_06741659.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|294449993|gb|EFG18504.1| DNA-binding protein HU [Bacteroides vulgatus PC510] Length = 476 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 50/93 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ V + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93 >gi|171464303|ref|YP_001798416.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193841|gb|ACB44802.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 106 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + +S+ + + + I + +G+++++ F TF ++ +R+G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFK 98 >gi|320109312|ref|YP_004184902.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] gi|319927833|gb|ADV84908.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] Length = 98 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 10/98 (10%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-----GEAIKISSFATFH 55 M+K IT++ LV++++++ L+ K S F F I + AV+ GE I Sbjct: 1 MAKGITKTALVRTLAEKLELTNKQSAAF----FEAIAEIAVKETKKNGE-FTIPGIGKLV 55 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 ++ +R+GRN QT + +KI + VV F+ + K I Sbjct: 56 KAERKARLGRNPQTGETIKIKAKTVVKFRVAKAAKDAI 93 >gi|189463459|ref|ZP_03012244.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM 17136] gi|265753811|ref|ZP_06089166.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189429888|gb|EDU98872.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM 17136] gi|263235525|gb|EEZ21049.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 93 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I+++ G+ ++ V + D+ + G + + F +F +KQ+ +V Sbjct: 1 MTKAEIVSRIAQQTGIEKEVVMTVVEAFMENVKDAMIAGNEVFLRGFGSFIIKQRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + + Sbjct: 61 RNISKNTTIVIPAHSIPAFKPAKVF 85 >gi|15604549|ref|NP_221067.1| integration host factor alpha-subunit (himA) [Rickettsia prowazekii str. Madrid E] gi|81554787|sp|Q9ZCL7|HLP_RICPR RecName: Full=Histone-like DNA-binding protein gi|3861244|emb|CAA15143.1| INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) [Rickettsia prowazekii] gi|292572345|gb|ADE30260.1| Integration host factor alpha-subunit [Rickettsia prowazekii Rp22] Length = 95 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + A + + + + +F +F VKQK R Sbjct: 2 TITKNKISLMLSSKLGFSNNLCEAIVNTVFSNILEIA-KVQKLTLKNFGSFEVKQKTPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 G N T V I ++ + F S LK I M Sbjct: 61 GINFHTKSPVMIASKKNLRFTPSEKLKALINKSM 94 >gi|150009221|ref|YP_001303964.1| putative histone-like protein [Parabacteroides distasonis ATCC 8503] gi|149937645|gb|ABR44342.1| putative histone-like protein [Parabacteroides distasonis ATCC 8503] Length = 91 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ +SK G + + + L N I + GE + I F + + + SR+ Sbjct: 1 MNKSQLIEELSKRVGNDKAEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + + + PR +V FK + L K I Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLLKEI 89 >gi|150005791|ref|YP_001300535.1| putative integration host factor IHF alpha subunit [Bacteroides vulgatus ATCC 8482] gi|149934215|gb|ABR40913.1| putative integration host factor IHF alpha subunit [Bacteroides vulgatus ATCC 8482] Length = 476 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 50/93 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ V + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93 >gi|317476084|ref|ZP_07935336.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316907722|gb|EFV29424.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 93 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I+++ G+ + +T V + +S + G + + F +F +KQK + Sbjct: 1 MTKADIIARIAQDTGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFILKQKAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN N + I V FK + Sbjct: 61 RNFSKNTTIVIPAHHVPAFKPA 82 >gi|313185099|gb|ADR50114.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 4 TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57 IT+SD+V IS L +K + F E+ + I+ SF TF V K Sbjct: 8 NITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRK 67 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +KG RN QT + VK+ V F+ LK+R+ Sbjct: 68 RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|312884772|ref|ZP_07744473.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309367685|gb|EFP95236.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 90 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKESV 89 >gi|313185021|gb|ADR50075.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 4 TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57 IT+SD+V IS L +K + F E+ + I+ SF TF V K Sbjct: 8 NITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRK 67 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +KG RN QT + VK+ V F+ LK+R+ Sbjct: 68 RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|257094678|ref|YP_003168319.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047202|gb|ACV36390.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 96 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 5 ITRSDLVKSISKE--FG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TRS+L+ ++ F L+ KD V + + ++ V G I+I F +F + Sbjct: 1 MTRSELITRLAAHSHFAQLTAKDDELTVKAILEGMSEALVSGGRIEIHGFGSFALNDSAP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN T + V + +RV F L++R+ Sbjct: 61 RNGRNPMTGETVPVPAKRVPHFTPGKELRERV 92 >gi|254882027|ref|ZP_05254737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640965|ref|ZP_07995673.1| integration host factor IHF alpha subunit [Bacteroides sp. 3_1_40A] gi|254834820|gb|EET15129.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387410|gb|EFV68281.1| integration host factor IHF alpha subunit [Bacteroides sp. 3_1_40A] Length = 476 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 50/93 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ V + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93 >gi|238753504|ref|ZP_04614867.1| Integration host factor subunit beta [Yersinia ruckeri ATCC 29473] gi|238708457|gb|EEQ00812.1| Integration host factor subunit beta [Yersinia ruckeri ATCC 29473] Length = 94 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|170719347|ref|YP_001747035.1| histone family protein DNA-binding protein [Pseudomonas putida W619] gi|169757350|gb|ACA70666.1| histone family protein DNA-binding protein [Pseudomonas putida W619] Length = 99 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L I+++ L+++ + + + + + I A+ + + + F TF + +G+R G+N Sbjct: 3 KPELAAVIAEKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + VKI V FK L++ + Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLRESV 88 >gi|308274087|emb|CBX30686.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.] Length = 100 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 7/93 (7%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTL--FNEICDSAVRGEAIKIS--SFATFHVKQKG 60 +T+++LV +I+ + +++ T V L F + A++ + K++ F TF ++ Sbjct: 11 MTKAELVDAIAADAKITK---TAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRA 67 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN QT E+KI R VV FKA LK+ + Sbjct: 68 ARKGRNPQTGAEIKIKARNVVKFKAGKKLKEAV 100 >gi|160937268|ref|ZP_02084630.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC BAA-613] gi|158439832|gb|EDP17581.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC BAA-613] Length = 51 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 52 ATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 TF V ++ R RN +T + V+I PRRV VF+A SILK+ ++ +G Sbjct: 4 GTFAVAERKGRQRRNPRTGEVVEIKPRRVPVFRAGSILKREVIQGNQG 51 >gi|154250962|ref|YP_001411786.1| histone family DNA-binding protein [Parvibaculum lavamentivorans DS-1] gi|154154912|gb|ABS62129.1| histone family protein DNA-binding protein [Parvibaculum lavamentivorans DS-1] Length = 113 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + S L+ I+++ LS+K +T + + +G ++++ V+++ +R+G Sbjct: 25 VPMSKLIAEIAEKHDLSKKAATELFSDFVELTVKNLKKGNKVRLTGLGILQVRKRAARMG 84 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + +KI + V F+ + LK+ I Sbjct: 85 RNPATGEAIKIKASKKVAFRVAKDLKEAI 113 >gi|300021566|ref|YP_003754177.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523387|gb|ADJ21856.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 107 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 46/91 (50%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T + ++++ + +K S + L I +G I+I V+++ +R Sbjct: 17 ETVTLKHIAAALAEAHEIPKKQSIALLEDLVTTIGKHLKKGARIRIGGLGVLQVRKRPAR 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN T + +KI + + F+A+ LK+ + Sbjct: 77 MGRNPATGEAIKIKASKKIAFRAAKELKELV 107 >gi|197103657|ref|YP_002129034.1| integration host factor beta subunit [Phenylobacterium zucineum HLK1] gi|196477077|gb|ACG76605.1| integration host factor beta subunit [Phenylobacterium zucineum HLK1] Length = 120 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ +++E L+++D R V + + ++ G +++ F V+ + +R Sbjct: 25 MIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSRDARA 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK+ L++R+ Sbjct: 85 GRNPRTGEPVDVRAKHVPFFKSGKELRERL 114 >gi|71907290|ref|YP_284877.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71846911|gb|AAZ46407.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 94 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 I RS+L + + + F L+R D V + I +G +++ F +F + + R+ Sbjct: 2 IVRSELSQRLHQRFPQLNRGDIDVAVGEILGAIGQQLAKGGRVEVRGFGSFALNYRPPRL 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN T + V + + FKA L++ +M Sbjct: 62 GRNPMTGERVAVPAKWTPHFKAGKELRELVM 92 >gi|329963577|ref|ZP_08301056.1| LysM domain protein [Bacteroides fluxus YIT 12057] gi|328528566|gb|EGF55537.1| LysM domain protein [Bacteroides fluxus YIT 12057] Length = 379 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+KD+ FV F + +S + + +KI TF + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKDADSFVKEFFLLVEESLEKDKYVKIKGLGTFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I V F LK+ I Sbjct: 61 SRESVNVNTGERIEIQGHTKVTFTPEPSLKEVI 93 >gi|126658610|ref|ZP_01729756.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|172036660|ref|YP_001803161.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] gi|126620047|gb|EAZ90770.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|171698114|gb|ACB51095.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] Length = 93 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 17/89 (19%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + +++K + ++ I ++ + + + F +F + + +R G Sbjct: 1 MNKGELIDAVANKAEVTKKQAETVISATIETIMEAVAGDDKVTLVGFGSFEARDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+++ I +V F A + K+R+ Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKERV 89 >gi|224534210|ref|ZP_03674788.1| DNA-binding protein HU [Borrelia spielmanii A14S] gi|73762238|gb|AAZ83607.1| Hbb [Borrelia spielmanii] gi|74476805|gb|ABA08453.1| Hbb [Borrelia spielmanii] gi|74476807|gb|ABA08454.1| Hbb [Borrelia spielmanii] gi|74476809|gb|ABA08455.1| Hbb [Borrelia spielmanii] gi|78482926|emb|CAJ20126.1| hbb protein [Borrelia spielmanii] gi|78482928|emb|CAJ20127.1| hbb protein [Borrelia spielmanii] gi|224514312|gb|EEF84628.1| DNA-binding protein HU [Borrelia spielmanii A14S] Length = 108 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFQELKSNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|222083260|ref|YP_002542663.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221738640|gb|ACM39478.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L + + V ++F +I ++A+ G I SF F +K R GR Sbjct: 3 TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 N T +KI + + F K + D + G Sbjct: 63 NPATGATIKIAASKKLTFTPG----KAVKDALNG 92 >gi|313184981|gb|ADR50055.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|74317692|ref|YP_315432.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] gi|74057187|gb|AAZ97627.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 90 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + R + + + + +G+ + + F +F+V ++ +R G Sbjct: 1 MNKSELIDAIADSADVSKAAAGRALEATVDAVKKALKKGDIVTLVGFGSFYVGKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+A LK Sbjct: 61 RNPRTGASIKIKAAKVPKFRAGKGLK 86 >gi|329954833|ref|ZP_08295850.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] gi|328526937|gb|EGF53948.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] Length = 59 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G I + F TF VK+K R+ N T Q + + P+ V+ +K S++LK Sbjct: 8 GNTISVQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLK 55 >gi|298384211|ref|ZP_06993771.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|298482997|ref|ZP_07001178.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298262490|gb|EFI05354.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|298270741|gb|EFI12321.1| DNA-binding protein HU [Bacteroides sp. D22] gi|301165255|emb|CBW24826.1| Putative histone-like DNA-binding protein [Bacteroides fragilis 638R] Length = 95 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 45/83 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ +S+E G+ R+ + + + D+ R + + F TF +K++ ++ Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERIVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 +N+Q + + I R+V FK S Sbjct: 61 QNIQQHTTICIPARKVPHFKPSE 83 >gi|300112900|ref|YP_003759475.1| integration host factor subunit beta [Nitrosococcus watsonii C-113] gi|299538837|gb|ADJ27154.1| integration host factor, beta subunit [Nitrosococcus watsonii C-113] Length = 96 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ ++ ++ LS +D V L + + +GE I+I F +F + + R Sbjct: 1 MTKSGLIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 61 GRNPKTGDTVPLSSKYVPHFKPGKELRERV 90 >gi|293371796|ref|ZP_06618206.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292633248|gb|EFF51819.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] Length = 88 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + LS ++T V + I ++ +GE + + F +F ++ + +R G Sbjct: 1 MNKSELIKEVALKRKLSFNEATNAVDAIMEAIAETMHKGEGVTLVGFGSFVIQGRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S +K Sbjct: 61 HNPATGGSMLIPAKRQVKFRPGSKMK 86 >gi|33152425|ref|NP_873778.1| integration host factor, beta subunit [Haemophilus ducreyi 35000HP] gi|71152154|sp|Q7VLR8|IHFB_HAEDU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|33148648|gb|AAP96167.1| integration host factor, beta subunit [Haemophilus ducreyi 35000HP] Length = 93 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ K I+ L K V + I + + + ++I F +F + + R+ Sbjct: 1 MTKSELIEKLIALNPSLPEKAVEDGVKDILENIMLTLEQAKRVEIRGFGSFSLHYRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGASVKLDAKYVPHFKAGKDLKERV 90 >gi|1580711|dbj|BAA11644.1| HupB, beta-subunit of HU [Escherichia coli W3110] Length = 54 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G+ + + F TF VK++ +R GRN QT +E+ I +V F+A LK + Sbjct: 3 GDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAV 53 >gi|312794857|ref|YP_004027779.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] gi|312166632|emb|CBW73635.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] Length = 92 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I +G+++++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEIIKTVVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFK 86 >gi|302343037|ref|YP_003807566.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301639650|gb|ADK84972.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 93 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + DL+ +++ + G + R V F + ++ RGE ++I+ F + V+ + +R Sbjct: 1 MNKKDLIAAVAGKLGYGPCAPVTGRVVEAAFEAMAEALGRGEQVRINGFGVWRVRGRKAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + ++I V+F+ + LK R+ Sbjct: 61 EGRNPRTGESIQIPAASGVIFRPADALKGRV 91 >gi|51598493|ref|YP_072681.1| hbbU protein [Borrelia garinii PBi] gi|219685851|ref|ZP_03540659.1| DNA-binding protein HU [Borrelia garinii Far04] gi|3913405|sp|Q57153|DBH_BORGA RecName: Full=DNA-binding protein HBbu gi|1280557|gb|AAC73080.1| histone-like protein HBbu [Borrelia garinii] gi|1280559|gb|AAC73081.1| histone-like protein HBbu [Borrelia garinii PBi] gi|1280563|gb|AAC73083.1| histone-like protein HBbu [Borrelia garinii] gi|1280565|gb|AAC73084.1| histone-like protein HBbu [Borrelia garinii] gi|1280567|gb|AAC73086.1| histone-like protein HBbu [Borrelia garinii] gi|51573064|gb|AAU07089.1| hbbU protein [Borrelia garinii PBi] gi|73762242|gb|AAZ83609.1| Hbb [Borrelia garinii] gi|219672625|gb|EED29656.1| DNA-binding protein HU [Borrelia garinii Far04] gi|313184979|gb|ADR50054.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184983|gb|ADR50056.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184985|gb|ADR50057.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184987|gb|ADR50058.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184989|gb|ADR50059.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184991|gb|ADR50060.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184993|gb|ADR50061.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184995|gb|ADR50062.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184997|gb|ADR50063.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184999|gb|ADR50064.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185001|gb|ADR50065.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185003|gb|ADR50066.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185005|gb|ADR50067.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185007|gb|ADR50068.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185009|gb|ADR50069.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185011|gb|ADR50070.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185013|gb|ADR50071.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185015|gb|ADR50072.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185017|gb|ADR50073.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185019|gb|ADR50074.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185023|gb|ADR50076.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185025|gb|ADR50077.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185027|gb|ADR50078.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185031|gb|ADR50080.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185035|gb|ADR50082.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185037|gb|ADR50083.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185039|gb|ADR50084.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185041|gb|ADR50085.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185043|gb|ADR50086.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185045|gb|ADR50087.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185047|gb|ADR50088.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185049|gb|ADR50089.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185051|gb|ADR50090.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185053|gb|ADR50091.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185055|gb|ADR50092.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185057|gb|ADR50093.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185059|gb|ADR50094.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185061|gb|ADR50095.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185063|gb|ADR50096.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185065|gb|ADR50097.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185067|gb|ADR50098.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185069|gb|ADR50099.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185071|gb|ADR50100.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185073|gb|ADR50101.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185075|gb|ADR50102.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185077|gb|ADR50103.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185079|gb|ADR50104.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185081|gb|ADR50105.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185083|gb|ADR50106.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185085|gb|ADR50107.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185087|gb|ADR50108.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185089|gb|ADR50109.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185091|gb|ADR50110.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185093|gb|ADR50111.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185095|gb|ADR50112.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185097|gb|ADR50113.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185105|gb|ADR50117.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185107|gb|ADR50118.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185109|gb|ADR50119.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185111|gb|ADR50120.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185113|gb|ADR50121.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185115|gb|ADR50122.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185117|gb|ADR50123.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185119|gb|ADR50124.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185121|gb|ADR50125.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|224369772|ref|YP_002603936.1| IhfB [Desulfobacterium autotrophicum HRM2] gi|223692489|gb|ACN15772.1| IhfB [Desulfobacterium autotrophicum HRM2] Length = 91 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ + + L++ ++ V F+ + ++ E ++I +F +K+ S G Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +V I +++ FK LK+R+ Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89 >gi|303256838|ref|ZP_07342852.1| integration host factor, beta subunit [Burkholderiales bacterium 1_1_47] gi|330998915|ref|ZP_08322642.1| integration host factor, beta subunit [Parasutterella excrementihominis YIT 11859] gi|302860329|gb|EFL83406.1| integration host factor, beta subunit [Burkholderiales bacterium 1_1_47] gi|329576129|gb|EGG57648.1| integration host factor, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 100 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+S+L+ ++ + L+ +D V ++ N + + +G I+I F +F + + Sbjct: 1 MTKSELIALLAADPAVIGNHLTARDVDDAVNSILNAMTAALAQGSRIEIRGFGSFSLNYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN ++ V++ + V FKA +++R+ Sbjct: 61 PPRVGRNPKSGDTVEVPAKIVPHFKAGKEMRERV 94 >gi|78045437|ref|YP_361687.1| histone-like family DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033941|emb|CAJ19940.1| histone-like family DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 99 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 48/98 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L +I+ +++ +++ V T+ + + + I+ F F ++ K R Sbjct: 1 MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 RN +T + V++ R V F A+ LK+R +D G + Sbjct: 61 RNPKTGETVQVGERVAVQFTAADELKRRFLDSKNGNRL 98 >gi|3913403|sp|Q45352|DBH_BORPR RecName: Full=DNA-binding protein HBbu gi|1280569|gb|AAC73077.1| histone-like protein HBbu [Borrelia parkeri] Length = 108 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 6/92 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K V F E+ +S I+ SF TF + K+ Sbjct: 9 VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 KG + RN QT + V +D V F+ LK Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLK 100 >gi|237723843|ref|ZP_04554324.1| DNA-binding protein HU [Bacteroides sp. D4] gi|229437858|gb|EEO47935.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4] Length = 94 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++VK IS G+ K V NE+ S + E + + F +F VK++ + Sbjct: 1 MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK S Sbjct: 61 RNISKNTAMIIPAHNIPAFKPS 82 >gi|281419890|ref|ZP_06250889.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri DSM 18205] gi|281406017|gb|EFB36697.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri DSM 18205] Length = 96 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++++ G S++D+ + V + + GEA+ I +F TF VK++ RV Sbjct: 1 MNNKEYIAELAQQTGYSQEDTQKLVRKAIDAMIAEFEDGEAVSIPNFGTFEVKKRMERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + + P+ V+ F+ + +K+++ Sbjct: 61 VNPTTKKRQLVPPKLVLGFRPVASVKEKL 89 >gi|237712971|ref|ZP_04543452.1| DNA-binding protein HU [Bacteroides sp. D1] gi|237717786|ref|ZP_04548267.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|256842595|ref|ZP_05548096.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262409581|ref|ZP_06086122.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|229446946|gb|EEO52737.1| DNA-binding protein HU [Bacteroides sp. D1] gi|229452885|gb|EEO58676.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|256735732|gb|EEU49065.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262352595|gb|EEZ01694.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] Length = 94 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++VK IS G+ K V NE+ S + E + + F +F VK++ + Sbjct: 1 MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK S Sbjct: 61 RNISKNTTMIIPAHNIPAFKPS 82 >gi|311742216|ref|ZP_07716026.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272] gi|311314709|gb|EFQ84616.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272] Length = 92 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I+RSDLV +++++ G ++ ++ ++ L + + DS +GE + I + + +R G Sbjct: 3 ISRSDLVSALAEKAGTTKTEADAVLSALSDVLLDSVGKGEKVSIPGILSVERVSRAARTG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + ++I V A S LK Sbjct: 63 RNPSTGETIEIPAGFGVKVSAGSKLK 88 >gi|257451488|ref|ZP_05616787.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|317058069|ref|ZP_07922554.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313683745|gb|EFS20580.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] Length = 92 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 41/73 (56%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 ++ ++ + +T+ + + A+ E I S F F V +K R+GRN +T +EV+I ++ Sbjct: 18 TKTEAEKAMTSFLETLEEVALLNENILFSGFGKFEVVEKAERLGRNPKTGEEVRIPAKKS 77 Query: 81 VVFKASSILKKRI 93 + FK L +++ Sbjct: 78 MKFKPGKSLDEKL 90 >gi|227877728|ref|ZP_03995764.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256843583|ref|ZP_05549071.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN] gi|256850059|ref|ZP_05555489.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US] gi|262047347|ref|ZP_06020304.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US] gi|293381854|ref|ZP_06627823.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295693326|ref|YP_003601936.1| DNA-binding protein hu [Lactobacillus crispatus ST1] gi|227862716|gb|EEJ70199.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256615003|gb|EEU20204.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN] gi|256713031|gb|EEU28022.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US] gi|260572321|gb|EEX28884.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US] gi|290921575|gb|EFD98608.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295031432|emb|CBL50911.1| DNA-binding protein HU [Lactobacillus crispatus ST1] Length = 94 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 43/91 (47%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI++ LV I+ + ++ D + + + + G +++ F F ++ + +R Sbjct: 2 ETISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT +E++I V FK K + Sbjct: 62 KGRNPQTGKEIEIAASNVPAFKPGKSFKDEV 92 >gi|224370126|ref|YP_002604290.1| Hbp [Desulfobacterium autotrophicum HRM2] gi|223692843|gb|ACN16126.1| Hbp [Desulfobacterium autotrophicum HRM2] Length = 89 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +S+ S+KD+ V + + ++ E++ + F TF ++ +R G Sbjct: 1 MNKGDLINKVSEVLN-SKKDAQTAVDCILATVTEALAEKESVTLVGFGTFKTAERKARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I R V F LK + Sbjct: 60 RNPQTGNEIDIPARFVPKFIPGKALKDAV 88 >gi|239617732|ref|YP_002941054.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239506563|gb|ACR80050.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 90 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I++ +++KD+ + + + + I + GE +++ F TF V ++ R G Sbjct: 1 MNKKELVAAIAERTHMTKKDAGKILDAIIDIIEEKLAGGEVVRLVGFGTFSVVKRKPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + +KI +V F LK ++ Sbjct: 61 VNPRTKEPIKIPGGKVPKFIPGKELKDKV 89 >gi|295691409|ref|YP_003595102.1| integration host factor subunit beta [Caulobacter segnis ATCC 21756] gi|295433312|gb|ADG12484.1| integration host factor, beta subunit [Caulobacter segnis ATCC 21756] Length = 96 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ E L++KD R V + + + G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ + V FK+ L+ R+ D Sbjct: 61 GRNPRTGEAVEVRAKHVPFFKSGKELRARLNAD 93 >gi|254434179|ref|ZP_05047687.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|207090512|gb|EDZ67783.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] Length = 119 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 38/77 (49%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L I+K+ G++ + +I G+ +++S F F+ K +R RN + Sbjct: 34 ELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNPR 93 Query: 69 TNQEVKIDPRRVVVFKA 85 T + +++ PR + FKA Sbjct: 94 TGEAIQVPPRSYLRFKA 110 >gi|239982533|ref|ZP_04705057.1| putative histone-like DNA-binding protein [Streptomyces albus J1074] gi|291454376|ref|ZP_06593766.1| histone-like DNA binding protein [Streptomyces albus J1074] gi|291357325|gb|EFE84227.1| histone-like DNA binding protein [Streptomyces albus J1074] Length = 217 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+++ V + + + + V GE + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQNAAEAVDAVLDAMVRAVVAGERVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+DV +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGT---KKLPKNDVAVKKAPKGS 108 >gi|239813722|ref|YP_002942632.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|239800299|gb|ACS17366.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] Length = 125 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+ I+ +S+ ++ R + T+ I + +G+ +++ F TF + +R G Sbjct: 1 MNRIELVEKIATAHNVSKAEAARILETVTGSIVAAVKKGDPVQLIGFGTFKQVARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N Q ++KI ++V F + K I Sbjct: 61 FNPQAGAKIKIAAQKVPKFVPGAAFKAAI 89 >gi|330994478|ref|ZP_08318403.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] gi|329758478|gb|EGG74997.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] Length = 536 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 R+DL E LS D+ + + + + +A+RGE + + +F F VK +R GRN Sbjct: 450 RTDL----GPEADLSNADTRKVIDAVVEAMTQAAIRGEEVTLPNFGKFKVKDVPAREGRN 505 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T ++I R + F + LK Sbjct: 506 PATGATIQIAASRKLGFTPAKALK 529 >gi|261210437|ref|ZP_05924731.1| DNA-binding protein HU-alpha [Vibrio sp. RC341] gi|260840495|gb|EEX67061.1| DNA-binding protein HU-alpha [Vibrio sp. RC341] Length = 90 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V F A LK I Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89 >gi|322437337|ref|YP_004219549.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165064|gb|ADW70769.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 98 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/93 (25%), Positives = 47/93 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV++++++ L+ K + F+ L + I ++ Sbjct: 1 MAKGMTKTALVRALAEKMELTNKQTAAFLDLLAETAVKETKKNGEFTIPGIGKLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R+GRN QT + +KI + VV F+ + I K I Sbjct: 61 ARLGRNPQTGETIKIKAKTVVKFRVAKIAKDTI 93 >gi|254883542|ref|ZP_05256252.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|254836335|gb|EET16644.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] Length = 93 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 43/82 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + V + + +S V G + + F +F +K++ ++ Sbjct: 1 MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N +KI + FK + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82 >gi|187736379|ref|YP_001878491.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|187426431|gb|ACD05710.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 89 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + ++ L++ I + G ++K + + + I + ++I F TF K + +R Sbjct: 1 MNKAQLIELIQSKLGADTTKKHAEEALAAVLESIKEGVKESGKVQIIGFGTFATKTREAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + I + V FKASS LK Sbjct: 61 TGRNPKTGNTINIPASKTVAFKASSALK 88 >gi|325168608|ref|YP_004280398.1| DNA binding protein [Agrobacterium sp. H13-3] gi|325064331|gb|ADY68020.1| DNA binding protein [Agrobacterium sp. H13-3] Length = 92 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 40/85 (47%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++V+ I+ E L++ + V T+F I +A G I F F +K R R Sbjct: 3 TTNEIVEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +K+ + + F+ + LK Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALK 87 >gi|288802260|ref|ZP_06407700.1| DNA-binding protein HU [Prevotella melaninogenica D18] gi|302346648|ref|YP_003814946.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] gi|288335227|gb|EFC73662.1| DNA-binding protein HU [Prevotella melaninogenica D18] gi|302151019|gb|ADK97280.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] Length = 92 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + I DS + + E + + F +F VK + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMETIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I FK + K ++DM+ Sbjct: 61 ARNISKNTTITIPAHDFPSFKPA----KTFIEDMK 91 >gi|303236678|ref|ZP_07323259.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] gi|302483182|gb|EFL46196.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] Length = 91 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I ++ V G+ +++ F T+ V ++ + G Sbjct: 1 MNKTELIEKIAAGAGLSKVDAKKALDATTAAIKEALVAGDKVQLVGFGTYSVTERPAHEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T ++++I ++V FK + L Sbjct: 61 INPATKEKIQIAAKKVAKFKPGAEL 85 >gi|111115057|ref|YP_709675.1| hbbU protein [Borrelia afzelii PKo] gi|216263785|ref|ZP_03435779.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1] gi|3913406|sp|Q57220|DBH_BORAF RecName: Full=DNA-binding protein HBbu gi|1280571|gb|AAC73093.1| histone-like protein HBbu [Borrelia afzelii] gi|1280575|gb|AAC73095.1| histone-like protein HBbu [Borrelia afzelii] gi|1280577|gb|AAC73096.1| histone-like protein HBbu [Borrelia afzelii] gi|1280579|gb|AAC73097.1| histone-like protein HBbu [Borrelia afzelii] gi|1280581|gb|AAC73098.1| histone-like protein HBbu [Borrelia afzelii] gi|73762244|gb|AAZ83610.1| Hbb [Borrelia afzelii] gi|110890331|gb|ABH01499.1| hbbU protein [Borrelia afzelii PKo] gi|215979829|gb|EEC20651.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1] gi|313184941|gb|ADR50035.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184947|gb|ADR50038.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184949|gb|ADR50039.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184951|gb|ADR50040.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184953|gb|ADR50041.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184955|gb|ADR50042.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184957|gb|ADR50043.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184959|gb|ADR50044.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184961|gb|ADR50045.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184963|gb|ADR50046.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184965|gb|ADR50047.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184967|gb|ADR50048.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184969|gb|ADR50049.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184971|gb|ADR50050.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184973|gb|ADR50051.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184975|gb|ADR50052.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184977|gb|ADR50053.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|187478614|ref|YP_786638.1| DNA-binding protein Hu-beta [Bordetella avium 197N] gi|115423200|emb|CAJ49731.1| DNA-binding protein Hu-beta [Bordetella avium 197N] Length = 90 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ + +S+ + R + L + + +G + + F TF V + +R G Sbjct: 1 MNKTELIDHIASKADISKAAAGRTLDALIGAVKTTLKKGGTVTLVGFGTFAVSSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V F+ LK Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALK 86 >gi|261339246|ref|ZP_05967104.1| hypothetical protein ENTCAN_05482 [Enterobacter cancerogenus ATCC 35316] gi|296103086|ref|YP_003613232.1| integration host factor subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|288319103|gb|EFC58041.1| integration host factor, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|295057545|gb|ADF62283.1| integration host factor subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096387|emb|CBK85477.1| integration host factor, beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 95 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQPHIPAKAVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|160898320|ref|YP_001563902.1| histone family protein DNA-binding protein [Delftia acidovorans SPH-1] gi|160363904|gb|ABX35517.1| histone family protein DNA-binding protein [Delftia acidovorans SPH-1] Length = 90 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALDSTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V F+ LK Sbjct: 61 RNPRTGETIKIKAAKVPKFRPGKALK 86 >gi|307566102|ref|ZP_07628560.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307345290|gb|EFN90669.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 92 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+S+KD + V + I DS + + E + + F +F VK + + Sbjct: 1 MTKADIINEIATGTGISKKDVSAVVESFMEAIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I FK + K ++DM+ Sbjct: 61 ARNISKNTTLTIPAHDFPSFKPA----KTFIEDMK 91 >gi|152969496|ref|YP_001334605.1| integration host factor subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893968|ref|YP_002918702.1| integration host factor subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|262040989|ref|ZP_06014211.1| integration host factor subunit beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330014029|ref|ZP_08307845.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3] gi|166918553|sp|A6T704|IHFB_KLEP7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150954345|gb|ABR76375.1| integration host factor beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546284|dbj|BAH62635.1| integration host factor beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041683|gb|EEW42732.1| integration host factor subunit beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533286|gb|EGF60038.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3] Length = 95 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|221067879|ref|ZP_03543984.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|264677812|ref|YP_003277718.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2] gi|299531632|ref|ZP_07045037.1| histone-like DNA-binding protein [Comamonas testosteroni S44] gi|220712902|gb|EED68270.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|262208324|gb|ACY32422.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2] gi|298720348|gb|EFI61300.1| histone-like DNA-binding protein [Comamonas testosteroni S44] Length = 90 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALDSTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDSIKIKAAKVPKFRPGKALK 86 >gi|238784531|ref|ZP_04628539.1| Integration host factor subunit beta [Yersinia bercovieri ATCC 43970] gi|238792398|ref|ZP_04636032.1| Integration host factor subunit beta [Yersinia intermedia ATCC 29909] gi|238714594|gb|EEQ06598.1| Integration host factor subunit beta [Yersinia bercovieri ATCC 43970] gi|238728324|gb|EEQ19844.1| Integration host factor subunit beta [Yersinia intermedia ATCC 29909] Length = 94 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDR 89 >gi|157826134|ref|YP_001493854.1| integration host factor alpha-subunit [Rickettsia akari str. Hartford] gi|157800092|gb|ABV75346.1| Integration host factor alpha-subunit [Rickettsia akari str. Hartford] Length = 96 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F+ I + A R + + + +F F VK K R Sbjct: 2 TITKEKISAMLSSKLGFSNNLCKEIVNTVFSNILEIA-REQKLTLKNFGRFEVKHKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 G N T V I+ ++ + F S+ LK Sbjct: 61 GINFHTKSPVIIESKKSLRFVPSAKLK 87 >gi|307565356|ref|ZP_07627849.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307346025|gb|EFN91369.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 424 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 38/81 (46%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L +I+K+ LS D+ +FV T+FN I D +KI TF ++ R N+ T Sbjct: 2 LATAIAKKNNLSNADAIKFVETMFNIIIDELKNSNPVKIKGLGTFKLQSVKPRESVNVNT 61 Query: 70 NQEVKIDPRRVVVFKASSILK 90 + V I+ + F +K Sbjct: 62 GERVLIEGHDKISFTPDQAMK 82 >gi|307297819|ref|ZP_07577625.1| histone family protein DNA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306917079|gb|EFN47461.1| histone family protein DNA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 90 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I+++ G+++KD+ + + T+ + I + +G+ +++ F TF V + +R G Sbjct: 1 MNKKELIAEIAEKTGVTKKDAGKTLDTVIDIIEKTLSKGDVVRLVGFGTFMVASRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + I +V F LK+++ Sbjct: 61 VNPRTKKPITIPGGKVPKFVPGKELKEKV 89 >gi|226941099|ref|YP_002796173.1| HupB2 [Laribacter hongkongensis HLHK9] gi|226716026|gb|ACO75164.1| HupB2 [Laribacter hongkongensis HLHK9] Length = 90 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L++ +++ + + ++ V L I + G I ++ F ++++ +R+G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + V I RR +VF + LK Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALK 86 >gi|161503890|ref|YP_001571002.1| integration host factor subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189045041|sp|A9MHX0|IHFB_SALAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|160865237|gb|ABX21860.1| hypothetical protein SARI_01980 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 94 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|302039319|ref|YP_003799641.1| transcriptional dual regulator HU-beta [Candidatus Nitrospira defluvii] gi|300607383|emb|CBK43716.1| Transcriptional dual regulator HU-beta [Candidatus Nitrospira defluvii] Length = 95 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQ 58 M+K++T+S + ++ + G+++K + +F+ ++ A R A + + Sbjct: 1 MAKSMTKSQIADHLAGKAGITKKTAVQFL----DDFAALAYREAKNAFVVPGIGKLVLAN 56 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + +R+GRN QT + +KI +RVV F+ + + K I+ Sbjct: 57 RKARMGRNPQTGEPIKIPAKRVVKFRVAKMAKDSIL 92 >gi|91783523|ref|YP_558729.1| nucleoid protein Hbs [Burkholderia xenovorans LB400] gi|186475779|ref|YP_001857249.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|91687477|gb|ABE30677.1| bacterial nucleoid protein Hbs [Burkholderia xenovorans LB400] gi|184192238|gb|ACC70203.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 90 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86 >gi|77165933|ref|YP_344458.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|76884247|gb|ABA58928.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] Length = 109 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/77 (24%), Positives = 38/77 (49%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L I+K+ G++ + +I G+ +++S F F+ K +R RN + Sbjct: 24 ELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNPR 83 Query: 69 TNQEVKIDPRRVVVFKA 85 T + +++ PR + FKA Sbjct: 84 TGEAIQVPPRSYLRFKA 100 >gi|261250477|ref|ZP_05943052.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891] gi|260939046|gb|EEX95033.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891] Length = 90 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T E++I V F A LK + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDAV 89 >gi|87248001|gb|ABD36054.1| Hbb [Borrelia lusitaniae] gi|87248003|gb|ABD36055.1| Hbb [Borrelia lusitaniae] Length = 108 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|89145724|gb|ABD62051.1| Hbb [Borrelia andersonii] Length = 108 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ ++ I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKNNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN QT + VK+ V F+ LK+R+ Sbjct: 69 RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|15594577|ref|NP_212366.1| hbbU protein [Borrelia burgdorferi B31] gi|195941414|ref|ZP_03086796.1| hbbU protein [Borrelia burgdorferi 80a] gi|216264191|ref|ZP_03436183.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a] gi|221217809|ref|ZP_03589277.1| DNA-binding protein HU [Borrelia burgdorferi 72a] gi|224532651|ref|ZP_03673272.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23] gi|224533805|ref|ZP_03674393.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a] gi|225549097|ref|ZP_03770072.1| DNA-binding protein HU [Borrelia burgdorferi 94a] gi|225550199|ref|ZP_03771159.1| DNA-binding protein HU [Borrelia burgdorferi 118a] gi|225552278|ref|ZP_03773218.1| DNA-binding protein HU [Borrelia sp. SV1] gi|226321207|ref|ZP_03796744.1| DNA-binding protein HU [Borrelia burgdorferi 29805] gi|3913407|sp|Q57267|DBH_BORBU RecName: Full=DNA-binding protein HU; AltName: Full=HBbu gi|1280537|gb|AAC73073.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280539|gb|AAC73074.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280541|gb|AAC73075.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280543|gb|AAC73076.1| histone-like protein HBbu [Borrelia burgdorferi] gi|2688124|gb|AAC66617.1| hbbU protein [Borrelia burgdorferi B31] gi|89145710|gb|ABD62044.1| Hbb [Borrelia burgdorferi] gi|89145712|gb|ABD62045.1| Hbb [Borrelia burgdorferi] gi|89145714|gb|ABD62046.1| Hbb [Borrelia burgdorferi] gi|89145716|gb|ABD62047.1| Hbb [Borrelia burgdorferi] gi|89145718|gb|ABD62048.1| Hbb [Borrelia burgdorferi] gi|89145720|gb|ABD62049.1| Hbb [Borrelia burgdorferi] gi|215980664|gb|EEC21471.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a] gi|221192486|gb|EEE18705.1| DNA-binding protein HU [Borrelia burgdorferi 72a] gi|224512431|gb|EEF82811.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23] gi|224513098|gb|EEF83461.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a] gi|225369311|gb|EEG98764.1| DNA-binding protein HU [Borrelia burgdorferi 118a] gi|225370323|gb|EEG99761.1| DNA-binding protein HU [Borrelia burgdorferi 94a] gi|225371276|gb|EEH00706.1| DNA-binding protein HU [Borrelia sp. SV1] gi|226233404|gb|EEH32148.1| DNA-binding protein HU [Borrelia burgdorferi 29805] gi|312149663|gb|ADQ29734.1| DNA-binding protein HU [Borrelia burgdorferi N40] gi|313185151|gb|ADR50140.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1588686|prf||2209287A hbb gene Length = 108 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|237737109|ref|ZP_04567590.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229420971|gb|EEO36018.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 92 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 + K + F+ T+ E+ + +G+ I F F V ++ +R RN QT +E+K++ ++ Sbjct: 22 AEKKAMAFLATI-EEVLE---KGDEISFLGFGKFEVTERAARTCRNPQTGEEMKVEAKKA 77 Query: 81 VVFKASSILKKRI 93 V FKA L +++ Sbjct: 78 VKFKAGKALSEKV 90 >gi|162148654|ref|YP_001603115.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] gi|161787231|emb|CAP56824.1| putative DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] Length = 91 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 38/83 (45%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 ++LV I+ LS+ D+ + V L + D+A G+ + I F K +R GRN Sbjct: 4 TELVDHIASAADLSKADARKAVDALVAAVTDAAKAGDEVTIPDLGKFKTKDVPAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 T + I R + F + LK Sbjct: 64 ATGATITIAASRKLTFTPAKALK 86 >gi|149072008|ref|YP_001293578.1| DNA binding protein hu-like protein [Rhodomonas salina] gi|134302959|gb|ABO70763.1| DNA binding protein hu-like protein [Rhodomonas salina] Length = 92 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV+ ++K+ L++K+S +TT+ I + GE + + F +F +++ +R G Sbjct: 1 MNKKDLVEIVAKKRNLTKKESEEIITTILETIIKTVSEGEKVTLVGFGSFEARERQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + ++I RV F K ++ + Sbjct: 61 RNPKTGERLQIPASRVPTFSVGKFFKDKVSN 91 >gi|1280587|gb|AAC73092.1| histone-like protein HBbu [Borrelia burgdorferi] gi|89145738|gb|ABD62058.1| Hbb [Borrelia genomosp. 2] Length = 108 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|300727913|ref|ZP_07061291.1| DNA-binding protein HU [Prevotella bryantii B14] gi|299774755|gb|EFI71369.1| DNA-binding protein HU [Prevotella bryantii B14] Length = 94 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ +S++ G+S+K+ + V + + + S + R E + + F +F +K + + Sbjct: 1 MTKADIIAEVSEQTGMSKKEVSAVVESFMDCVKLSLLERKENVYLRGFGSFVIKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I + FK + K +DDM+ Sbjct: 61 ARNISKNTTITIAAHDLPSFKPA----KNFIDDMK 91 >gi|296446427|ref|ZP_06888371.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296256062|gb|EFH03145.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 94 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ +++ S+ +T + + I + +GE +++ F TF VK++ + VG Sbjct: 2 VNKLELVEHVAEATDTSKAAATAAIDAVLEGITMALKKGEEVRLVGFGTFSVKKRAAGVG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +E++I FK + LK + Sbjct: 62 RNPATGEEIQIPESTSARFKPGATLKAAL 90 >gi|307729641|ref|YP_003906865.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|307584176|gb|ADN57574.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] Length = 90 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQAEISKAAAGRALEAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86 >gi|260774395|ref|ZP_05883309.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14] gi|260610522|gb|EEX35727.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14] Length = 90 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKVQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I V F A LK Sbjct: 61 RNPKTGEEIQISAANVPAFVAGKALK 86 >gi|27380036|ref|NP_771565.1| DNA-binding protein HU [Bradyrhizobium japonicum USDA 110] gi|27353190|dbj|BAC50190.1| hup [Bradyrhizobium japonicum USDA 110] Length = 99 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 43/90 (47%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT L I++ LS+K + +T + I +G+ ++I V+++ +R Sbjct: 10 TITLKHLAADIAESQDLSKKHAEAVLTDMVELIAKHLKKGDRVRIVGLGILQVRKRAART 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + + I + V F+ LK+ I Sbjct: 70 GRNPATGEPIHIKASKKVAFRPVKELKEAI 99 >gi|3913402|sp|Q45231|DBH_BORJA RecName: Full=DNA-binding protein HBbu gi|1280597|gb|AAC73099.1| histone-like protein HBbu [Borrelia japonica] gi|1280599|gb|AAC73100.1| histone-like protein HBbu [Borrelia japonica] gi|1280601|gb|AAC73101.1| histone-like protein HBbu [Borrelia japonica] gi|1280603|gb|AAC73102.1| histone-like protein HBbu [Borrelia japonica] gi|1280605|gb|AAC73103.1| histone-like protein HBbu [Borrelia japonica] Length = 108 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|288927531|ref|ZP_06421378.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp. oral taxon 317 str. F0108] gi|288330365|gb|EFC68949.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp. oral taxon 317 str. F0108] Length = 96 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 46/85 (54%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + ++++ G ++ + V + +E+ G+ + I F TF VK++ RV N Sbjct: 5 EFITELAQQTGYTQNVTQTLVRNVIDEMAVRFDEGDVVSIPGFGTFEVKKRLERVVVNPA 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T Q + + P+ V+ F+ ++ +K+R+ Sbjct: 65 TQQRMLVPPKLVLNFRPTASIKERL 89 >gi|206575911|ref|YP_002239439.1| integration host factor, beta subunit [Klebsiella pneumoniae 342] gi|288936290|ref|YP_003440349.1| integration host factor subunit beta [Klebsiella variicola At-22] gi|290510655|ref|ZP_06550025.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55] gi|226709796|sp|B5XY84|IHFB_KLEP3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|206564969|gb|ACI06745.1| integration host factor, beta subunit [Klebsiella pneumoniae 342] gi|288890999|gb|ADC59317.1| integration host factor, beta subunit [Klebsiella variicola At-22] gi|289777371|gb|EFD85369.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55] Length = 95 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|308272922|emb|CBX29526.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.] Length = 110 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 7/93 (7%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTL--FNEICDSAVRGEAIKIS--SFATFHVKQKG 60 +T+++LV +I+ + +++ T V L F + A++ + K++ F TF ++ Sbjct: 21 MTKAELVDAIAADAKITK---TAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRA 77 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN QT E+KI R VV FKA LK+ + Sbjct: 78 ARKGRNPQTGAEIKIKARNVVKFKAGKKLKESV 110 >gi|268609259|ref|ZP_06142986.1| nucleoid DNA-binding protein [Ruminococcus flavefaciens FD-1] Length = 92 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++++ ++K++ V + I D+ GE + I F TF V+ + + Sbjct: 1 MTKTELISAVAEKTDFTKKNAESAVNAMIAAITDALASGEKVSIVGFGTFEVRDRKEKQV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + + FKA LK + Sbjct: 61 INPQTKKMMTAPASKAPAFKAGQALKNAV 89 >gi|33594401|ref|NP_882045.1| DNA-binding protein HU-beta [Bordetella pertussis Tohama I] gi|33597120|ref|NP_884763.1| DNA-binding protein HU-beta [Bordetella parapertussis 12822] gi|33600964|ref|NP_888524.1| DNA-binding protein HU-beta [Bordetella bronchiseptica RB50] gi|163857015|ref|YP_001631313.1| DNA-binding protein HU-beta [Bordetella petrii DSM 12804] gi|293604392|ref|ZP_06686799.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|311105151|ref|YP_003978004.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8] gi|5777374|emb|CAB53382.1| DNA-binding protein Hu-beta [Bordetella pertussis] gi|5777382|emb|CAB53380.1| Hu-beta [Bordetella bronchiseptica] gi|33564476|emb|CAE43789.1| DNA-binding protein Hu-beta [Bordetella pertussis Tohama I] gi|33566571|emb|CAE37828.1| DNA-binding protein Hu-beta [Bordetella parapertussis] gi|33575399|emb|CAE32476.1| DNA-binding protein Hu-beta [Bordetella bronchiseptica RB50] gi|163260743|emb|CAP43045.1| DNA-binding protein Hu-beta [Bordetella petrii] gi|292817269|gb|EFF76343.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|310759840|gb|ADP15289.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8] gi|317402747|gb|EFV83294.1| DNA-binding protein Hu-beta [Achromobacter xylosoxidans C54] gi|332383812|gb|AEE68659.1| DNA-binding protein HU-beta [Bordetella pertussis CS] Length = 90 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ + +S+ + R + L + + +G + + F TF V + +R G Sbjct: 1 MNKTELIDHIASKADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V F+ LK Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALK 86 >gi|1280547|gb|AAC73087.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280549|gb|AAC73088.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280551|gb|AAC73089.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|197294717|ref|YP_001799258.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171854044|emb|CAM12017.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] Length = 94 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Query: 9 DLVKSISKEFGLSRKDSTR----FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 D +K ++++ +S+K++ + FV ++ E S E + ++ F TF KQ+ +R G Sbjct: 5 DFLKILAEKHNVSQKEAAKILDSFVAAIY-ESVQSFEENEKLTLTGFGTFGAKQRTTRQG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T + + I ++V VFK S K Sbjct: 64 KNPRTGETIDIPAKKVPVFKFSKNFK 89 >gi|1280561|gb|AAC73082.1| histone-like protein HBbu [Borrelia garinii] Length = 108 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ + F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHIAYFRPGKDLKERVW 104 >gi|284928884|ref|YP_003421406.1| nucleoid protein Hbs [cyanobacterium UCYN-A] gi|284809343|gb|ADB95048.1| bacterial nucleoid protein Hbs [cyanobacterium UCYN-A] Length = 93 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 16/89 (17%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + +++K + ++ I ++ + + + F +F + + +R G Sbjct: 1 MNKGELIDTVANKADVTKKQADSIISATIETIMEAVAGDDKVTLVGFGSFEARNRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+++ I +V F A + K+++ Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKEKV 89 >gi|104784354|ref|YP_610852.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48] gi|95113341|emb|CAK18069.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48] Length = 98 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L I+++ L+++ + + + + I A+ + + + F TF + +G+R G+N Sbjct: 3 KPELAAVIAEKADLTKEKANIVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT Q VKI V FK L+ Sbjct: 62 PQTGQPVKIKASNTVAFKPGKNLR 85 >gi|322433108|ref|YP_004210357.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|322433120|ref|YP_004210369.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165335|gb|ADW71039.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165347|gb|ADW71051.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 125 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 10/94 (10%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-----GEAIKISSFATFHV 56 SKT+T++ LV +S++ LS+K + F F+ + +A++ GE I Sbjct: 30 SKTMTKAALVLLVSEKMELSKKQTAEF----FDLLAATAIQETKKNGE-FTIPGLGKLVK 84 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 Q+ +R+GRN QT + +KI + V F+ + K Sbjct: 85 AQRAARLGRNPQTGETIKIKAKTAVKFRVAKAAK 118 >gi|262382608|ref|ZP_06075745.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|262295486|gb|EEY83417.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] Length = 95 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + R +LVK+++ + +++ ++ RFV + E A+ + ++ + F T ++ R+ Sbjct: 1 MNRRELVKTLADKMSVTQAEAMRFVQA-WEETTTEALESDGSLMLLGFGTLSAWEQTERI 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + I RR V FK +L KR+ Sbjct: 60 GRNPRNGVAYMIRARRSVKFKPGKLLLKRL 89 >gi|170692398|ref|ZP_02883561.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|323526044|ref|YP_004228197.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|170142828|gb|EDT10993.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|323383046|gb|ADX55137.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 90 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQAEISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALK 86 >gi|256829419|ref|YP_003158147.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256578595|gb|ACU89731.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 101 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 37/73 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ + E G S +++ R V + I +S +G+ I + T V ++ R G Sbjct: 10 VEKADLIARLKAEMGYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKG 69 Query: 65 RNLQTNQEVKIDP 77 + T +++K P Sbjct: 70 EDHSTGRDIKFSP 82 >gi|219684742|ref|ZP_03539685.1| DNA-binding protein HU [Borrelia garinii PBr] gi|219672104|gb|EED29158.1| DNA-binding protein HU [Borrelia garinii PBr] gi|313185033|gb|ADR50081.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|312148159|gb|ADQ30818.1| DNA-binding protein HU [Borrelia burgdorferi JD1] Length = 108 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVW 104 >gi|222080139|ref|YP_002540002.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221738784|gb|ACM39563.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 39/85 (45%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L+R + V ++F I D+A+ I SF F +K R GR Sbjct: 3 TTNEIADKIASEQSLTRAQAKTIVESVFKHITDAALACAETSIPSFGKFKIKDTPERQGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +KI + + F +K Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVK 87 >gi|238898611|ref|YP_002924292.1| HU, DNA-binding transcriptional regulator, alpha subunit -3 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466370|gb|ACQ68144.1| HU, DNA-binding transcriptional regulator, alpha subunit -3 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 114 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/95 (21%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I++ G+++ + + + + I +S + E++++ F TF+VK + +R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RN QT + +++ + S K + D ++G Sbjct: 61 RNPQTGEPIELP----ACYVPSLNFAKALKDALKG 91 >gi|156934598|ref|YP_001438514.1| integration host factor subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156532852|gb|ABU77678.1| hypothetical protein ESA_02432 [Cronobacter sakazakii ATCC BAA-894] Length = 100 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S+ + K V + + + +GE I+I F +F + + R Sbjct: 7 MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 67 GRNPKTGDKVELEGKYVPHFKPGKELRDR 95 >gi|237707812|ref|ZP_04538293.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA] gi|229458140|gb|EEO63861.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA] Length = 90 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ T + + F E+ + +R + + I F TF + +R+ Sbjct: 1 MNKTDLIKMVAEKANKPTKEVTEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T + V++ + VV FK S Sbjct: 60 RNPATGEPVEVPEKEVVKFKPS 81 >gi|188584610|ref|YP_001928095.1| integration host factor, beta subunit [Methylobacterium populi BJ001] gi|179348472|gb|ACB83519.1| integration host factor, beta subunit [Methylobacterium populi BJ001] Length = 94 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ + + + L +D V T+ I + RG+ +++ F F VK + +R Sbjct: 1 MIKSELILRLVEQNPHLYARDVEAVVNTILETITAAMERGDRVELRGFGAFSVKHREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN ++ V ++ + VF+ L+ ++ D+ Sbjct: 61 GRNPRSGAAVAVEAKTAPVFRPGKELRLKLQDE 93 >gi|149185138|ref|ZP_01863455.1| integration host factor beta-subunit [Erythrobacter sp. SD-21] gi|148831249|gb|EDL49683.1| integration host factor beta-subunit [Erythrobacter sp. SD-21] Length = 94 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ +I+++ L ++ + V F EI G +++ F F +++ +R Sbjct: 2 MIRSELLTAIAEDNSDLRAEEVEQVVDIFFEEISQRLTEGGRVELRGFGAFSTRERQARQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + ++V FK +++R+ ++ Sbjct: 62 GRNPRTGEVVDVPAKKVPYFKPGKEIRERLNEN 94 >gi|118594696|ref|ZP_01552043.1| Integration host factor, beta subunit [Methylophilales bacterium HTCC2181] gi|118440474|gb|EAV47101.1| Integration host factor, beta subunit [Methylophilales bacterium HTCC2181] Length = 92 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L+ ++ F L KD+ V + + + + + + I+I F +F + + SRV Sbjct: 1 MTKSKLINILASRFNQLVHKDAELSVKAILDSMSQALINKDRIEIRGFGSFSLNFRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ +V + + V FKA L+ R+ Sbjct: 61 GRNPKSGAQVHVPEKFVPHFKAGKELRVRV 90 >gi|302522114|ref|ZP_07274456.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78] gi|318056528|ref|ZP_07975251.1| putative histone-like DNA-binding protein [Streptomyces sp. SA3_actG] gi|318076088|ref|ZP_07983420.1| putative histone-like DNA-binding protein [Streptomyces sp. SA3_actF] gi|302431009|gb|EFL02825.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78] Length = 209 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+++ V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+DV +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGT---KKLPKNDVAVKKAPKGS 108 >gi|295836329|ref|ZP_06823262.1| DNA binding protein HU [Streptomyces sp. SPB74] gi|197699336|gb|EDY46269.1| DNA binding protein HU [Streptomyces sp. SPB74] Length = 209 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+++ V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+DV +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGT---KKLPKNDVAVKKAPKGS 108 >gi|26991989|ref|NP_747414.1| histone family protein DNA-binding protein [Pseudomonas putida KT2440] gi|148550422|ref|YP_001270524.1| histone family protein DNA-binding protein [Pseudomonas putida F1] gi|24987121|gb|AAN70878.1|AE016732_3 DNA-binding protein HU-alpha [Pseudomonas putida KT2440] gi|148514480|gb|ABQ81340.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas putida F1] gi|313501287|gb|ADR62653.1| HupA [Pseudomonas putida BIRD-1] Length = 99 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L I+ + L+++ + + + + + I A+ + + + F TF + +G+R G+N Sbjct: 3 KPELAAVIADKADLTKEKANQVLNAILDSIT-GALDKDTVTLVGFGTFEKRHRGARTGKN 61 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 QT + VKI V FK L+ Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLR 85 >gi|296157830|ref|ZP_06840664.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|295892076|gb|EFG71860.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] Length = 90 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKQGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86 >gi|325283874|ref|YP_004256415.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] gi|324315683|gb|ADY26798.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] Length = 94 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L IS++ GLSRK + V + + D+ +G + + + TF + Q R G Sbjct: 6 VAKAELAARISEQTGLSRKQAGDVVASAVGLMVDALKQGRTVGLPNLGTFSISQTSQRQG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T + + I + V FK S+ L+ ++ Sbjct: 66 VRPGTTERITIPAGKKVRFKISTGLRDQL 94 >gi|187923899|ref|YP_001895541.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|187715093|gb|ACD16317.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] Length = 90 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +S+ + R + + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHVAQQADISKAAAGRALDAVIDGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86 >gi|37523114|ref|NP_926491.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] gi|35214117|dbj|BAC91486.1| gll3545 [Gloeobacter violaceus PCC 7421] Length = 105 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 3 KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + R L++ ++ GL++K + + I D+ +G +K+S F +F V+++ + Sbjct: 5 EPLNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPA 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R + +T Q V + VF + L++R+ Sbjct: 65 RTNIHPRTGQPVLVPAAWNAVFSPAQALRERL 96 >gi|302344202|ref|YP_003808731.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301640815|gb|ADK86137.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 95 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEIC-DSAVRGEAIKISSFATFHVKQKGS 61 K +T+++++ I+ + +S++ + + F EIC D + G I+++ TF +K+ Sbjct: 4 KPMTKAEMIDKIASKADISKR-AAKDALEAFVEICRDEVMAGGTIRVAGLGTFSLKESAP 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASS 87 R G N T + ++I ++ + FK S+ Sbjct: 63 RQGVNPATRKPIEITAKKRMAFKMSA 88 >gi|318056820|ref|ZP_07975543.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actG] gi|318080704|ref|ZP_07988036.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actF] Length = 107 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 15 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 74 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 75 ARNPQTGEPIQIAAGYSVKVSAGSKLKE 102 >gi|1280545|gb|AAC73085.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280593|gb|AAC73106.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|313185103|gb|ADR50116.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 LTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|294674943|ref|YP_003575559.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294472674|gb|ADE82063.1| DNA-binding protein, HU family [Prevotella ruminicola 23] Length = 90 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 41/71 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+ I+ G+S+ D+ + + I D+ V+G+ + + F TF V ++ +R G Sbjct: 1 MNKTELVEKIAASAGISKVDAKKALDATVVAIKDALVKGDKVALVGFGTFSVNERPAREG 60 Query: 65 RNLQTNQEVKI 75 N T Q++ I Sbjct: 61 INPLTKQKITI 71 >gi|241763693|ref|ZP_04761742.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241367082|gb|EER61456.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 90 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86 >gi|121609650|ref|YP_997457.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] gi|121554290|gb|ABM58439.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 105 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ IS +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 16 VNKTELIEYISDNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 75 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 76 RNPRTGSAIKIKAAKVPKFRPGKALK 101 >gi|152965328|ref|YP_001361112.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151359845|gb|ABS02848.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 179 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK + V + I + +G+ + IS F TF + + +R G Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90 >gi|260597310|ref|YP_003209881.1| integration host factor subunit beta [Cronobacter turicensis z3032] gi|260216487|emb|CBA29645.1| Integration host factor subunit beta [Cronobacter turicensis z3032] Length = 94 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S+ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|226943962|ref|YP_002799035.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226718889|gb|ACO78060.1| histone-like bacterial DNA-binding protein [Azotobacter vinelandii DJ] Length = 55 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G + + F F VK++ +R GRN T QE++I RV FKA LK+ + Sbjct: 4 GREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAV 54 >gi|3913401|sp|Q44625|DBH_BORAD RecName: Full=DNA-binding protein HBbu gi|1280589|gb|AAC73108.1| histone-like protein HBbu [Borrelia andersonii] gi|89145722|gb|ABD62050.1| Hbb [Borrelia andersonii] gi|89145726|gb|ABD62052.1| Hbb [Borrelia andersonii] Length = 108 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN QT + VK+ V F+ LK+R+ Sbjct: 69 RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|94984283|ref|YP_603647.1| histone-like protein DNA-binding protein [Deinococcus geothermalis DSM 11300] gi|94554564|gb|ABF44478.1| histone-like protein DNA-binding protein [Deinococcus geothermalis DSM 11300] Length = 116 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I ++ +V I++ LSRK ++ V T+ + I + G+ + + T V + +R G Sbjct: 28 IAKTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTETAARTG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 T++ ++I + + FK ++ LK Sbjct: 88 VRPGTSERIQIPAGKKIRFKVATTLK 113 >gi|160886673|ref|ZP_02067676.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483] gi|298383516|ref|ZP_06993077.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|156107084|gb|EDO08829.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483] gi|298263120|gb|EFI05983.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 93 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + V + + +S V G + + F +F +K++ + Sbjct: 1 MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFVIKRRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N +KI + FK + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82 >gi|332827120|gb|EGJ99905.1| hypothetical protein HMPREF9455_03778 [Dysgonomonas gadei ATCC BAA-286] Length = 96 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/100 (21%), Positives = 49/100 (49%), Gaps = 4/100 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T +L+ +++K G +++ ++ + + I + G +I I F F K+KG R+ Sbjct: 1 MTNQELIAALAKRLGWTQRQTSEVLEATVSIINSNLEDGNSINIQGFGLFETKKKGERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 N + Q + P+ + F+ +K D+++ + N+ Sbjct: 61 VNPVSKQRFLVPPKISLAFRPGQTIK----DNLKNLEVNE 96 >gi|297538718|ref|YP_003674487.1| histone family protein DNA-binding protein [Methylotenera sp. 301] gi|297258065|gb|ADI29910.1| histone family protein DNA-binding protein [Methylotenera sp. 301] Length = 90 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+ GLS+ + R + I + +G+ + + F TF+V ++ +R G Sbjct: 1 MNKSELIDSIASASGLSKAAAGRALDATTAAITAAMKKGDLVTLIGFGTFYVGKREARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI F+A LK Sbjct: 61 RNPRTGATIKIKAANSPKFRAGKSLK 86 >gi|212703905|ref|ZP_03312033.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC 29098] gi|212672608|gb|EEB33091.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC 29098] Length = 91 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL K + + + + ++ GE++ + F +F V ++ +R Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALASGESVTFTGFGSFKVVERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I +V F LK I Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAI 90 >gi|91201933|emb|CAJ74993.1| strongly similar to DNA binding protein HU [Candidatus Kuenenia stuttgartiensis] Length = 103 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E +S+ + V + N I + +++ F TF VK++ +R G Sbjct: 1 MNKQELVEYVANECSVSKTCGEKAVNAVLNGIKQGVKKSNEVRLIGFGTFSVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I + V F KK + Sbjct: 61 RNPQTGAVINIKASKTVKFSVGQDFKKVV 89 >gi|22126657|ref|NP_670080.1| integration host factor subunit beta [Yersinia pestis KIM 10] gi|45441027|ref|NP_992566.1| integration host factor subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51595758|ref|YP_069949.1| integration host factor subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806681|ref|YP_650597.1| integration host factor subunit beta [Yersinia pestis Antiqua] gi|108812745|ref|YP_648512.1| integration host factor subunit beta [Yersinia pestis Nepal516] gi|145599574|ref|YP_001163650.1| integration host factor subunit beta [Yersinia pestis Pestoides F] gi|149366650|ref|ZP_01888684.1| integration host factor beta-subunit [Yersinia pestis CA88-4125] gi|153947721|ref|YP_001401544.1| integration host factor subunit beta [Yersinia pseudotuberculosis IP 31758] gi|162421385|ref|YP_001606430.1| integration host factor subunit beta [Yersinia pestis Angola] gi|165924753|ref|ZP_02220585.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938957|ref|ZP_02227510.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009945|ref|ZP_02230843.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211556|ref|ZP_02237591.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399912|ref|ZP_02305430.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419646|ref|ZP_02311399.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424246|ref|ZP_02315999.1| integration host factor, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470895|ref|ZP_02335599.1| integration host factor, beta subunit [Yersinia pestis FV-1] gi|170024892|ref|YP_001721397.1| integration host factor subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894836|ref|YP_001871948.1| integration host factor subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928541|ref|YP_002346416.1| integration host factor subunit beta [Yersinia pestis CO92] gi|229841363|ref|ZP_04461522.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843468|ref|ZP_04463614.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229895841|ref|ZP_04511011.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Pestoides A] gi|229903153|ref|ZP_04518266.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Nepal516] gi|238757620|ref|ZP_04618804.1| Integration host factor subunit beta [Yersinia aldovae ATCC 35236] gi|270486948|ref|ZP_06204022.1| integration host factor subunit beta [Yersinia pestis KIM D27] gi|21362608|sp|Q8ZGB1|IHFB_YERPE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81691814|sp|Q66CI5|IHFB_YERPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123073279|sp|Q1CGG8|IHFB_YERPN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123372652|sp|Q1CA70|IHFB_YERPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975897|sp|A7FJW6|IHFB_YERP3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975898|sp|A4TN15|IHFB_YERPP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709822|sp|B2KA26|IHFB_YERPB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709823|sp|A9R7I5|IHFB_YERPG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709824|sp|B1JRD6|IHFB_YERPY RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|21959671|gb|AAM86331.1|AE013881_1 integration host factor (IHF), beta subunit [Yersinia pestis KIM 10] gi|45435886|gb|AAS61443.1| integration host factor beta-subunit [Yersinia pestis biovar Microtus str. 91001] gi|51589040|emb|CAH20658.1| integration host factor beta-subunit [Yersinia pseudotuberculosis IP 32953] gi|108776393|gb|ABG18912.1| integration host factor beta-subunit [Yersinia pestis Nepal516] gi|108778594|gb|ABG12652.1| integration host factor beta-subunit [Yersinia pestis Antiqua] gi|115347152|emb|CAL20045.1| integration host factor beta-subunit [Yersinia pestis CO92] gi|145211270|gb|ABP40677.1| integration host factor beta-subunit [Yersinia pestis Pestoides F] gi|149291024|gb|EDM41099.1| integration host factor beta-subunit [Yersinia pestis CA88-4125] gi|152959216|gb|ABS46677.1| integration host factor, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162354200|gb|ABX88148.1| integration host factor, beta subunit [Yersinia pestis Angola] gi|165913104|gb|EDR31728.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923813|gb|EDR40945.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991341|gb|EDR43642.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207327|gb|EDR51807.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962387|gb|EDR58408.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050620|gb|EDR62028.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057095|gb|EDR66858.1| integration host factor, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751426|gb|ACA68944.1| integration host factor, beta subunit [Yersinia pseudotuberculosis YPIII] gi|186697862|gb|ACC88491.1| integration host factor, beta subunit [Yersinia pseudotuberculosis PB1/+] gi|229678923|gb|EEO75026.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Nepal516] gi|229689815|gb|EEO81876.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697729|gb|EEO87776.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700764|gb|EEO88793.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Pestoides A] gi|238704125|gb|EEP96658.1| Integration host factor subunit beta [Yersinia aldovae ATCC 35236] gi|270335452|gb|EFA46229.1| integration host factor subunit beta [Yersinia pestis KIM D27] gi|320015748|gb|ADV99319.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 94 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|16127816|ref|NP_422380.1| integration host factor subunit beta [Caulobacter crescentus CB15] gi|221236637|ref|YP_002519074.1| integration host factor subunit beta [Caulobacter crescentus NA1000] gi|21362615|sp|Q9A2H5|IHFB_CAUCR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803531|sp|B8H6A5|IHFB_CAUCN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|13425330|gb|AAK25548.1| integration host factor beta subunit [Caulobacter crescentus CB15] gi|220965810|gb|ACL97166.1| integration host factor beta-subunit [Caulobacter crescentus NA1000] Length = 96 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ E L++KD R V + + + G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + V FK+ L+ R+ D Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNAD 93 >gi|295836876|ref|ZP_06823809.1| DNA-binding protein HU [Streptomyces sp. SPB74] gi|302521508|ref|ZP_07273850.1| integration host factor, alpha subunit [Streptomyces sp. SPB78] gi|295826251|gb|EFG64756.1| DNA-binding protein HU [Streptomyces sp. SPB74] gi|302430403|gb|EFL02219.1| integration host factor, alpha subunit [Streptomyces sp. SPB78] Length = 93 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIAAGYSVKVSAGSKLKE 88 >gi|39938728|ref|NP_950494.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721837|dbj|BAD04327.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 94 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGS 61 + + + ++ ++++ G+S+K++ +F+ I S E + ++ F TF VK + + Sbjct: 1 MNKLEFLRKLAEKNGVSQKEADKFLNNFIEVISQSLQEFKEDEKVTLTGFGTFEVKHRSA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R G+N +T + + I ++V FK S K Sbjct: 61 REGKNPRTGKTIDIPAKKVPTFKFSKSFK 89 >gi|268679600|ref|YP_003304031.1| histone family protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] gi|268617631|gb|ACZ11996.1| histone family protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] Length = 92 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ ++++S++ GLS+KD+ + V I D+ V G+ + F TF + +R R Sbjct: 3 KAEFIQAVSEKAGLSKKDTQKAVDAALEAISDALVAGKEVSFIGFGTFSTATRAARKARV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T++ V + V FK LK Sbjct: 63 PGTDRVVDVAKTTAVKFKVGKKLK 86 >gi|333024856|ref|ZP_08452920.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071] gi|332744708|gb|EGJ75149.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071] Length = 112 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 20 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 79 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 80 ARNPQTGEPIQIAAGYSVKVSAGSKLKE 107 >gi|319794282|ref|YP_004155922.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] gi|315596745|gb|ADU37811.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] Length = 116 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+ I+ +S+ ++ R + T+ + I + +G+ ++I F TF + +R G Sbjct: 1 MNRIELVEKIATTHTVSKAEAARILETVTSAIVAAVKKGDPVQIVGFGTFKQVARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N Q +KI ++V F + K + Sbjct: 61 FNPQAGTAIKIAAQKVPKFVPGAAFKAAV 89 >gi|146311088|ref|YP_001176162.1| integration host factor subunit beta [Enterobacter sp. 638] gi|166918547|sp|A4W8T1|IHFB_ENT38 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|145317964|gb|ABP60111.1| integration host factor, beta subunit [Enterobacter sp. 638] Length = 95 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89 >gi|326445075|ref|ZP_08219809.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] Length = 93 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + R++L+ ++++ ++RKD+ +T L + + +G E + I F TF + +R Sbjct: 1 MNRTELIAALTERAEVTRKDADAVLTALAETVGEIVAKGDEKVTIPGFLTFERIHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|294629628|ref|ZP_06708188.1| DNA-binding protein HU [Streptomyces sp. e14] gi|302551775|ref|ZP_07304117.1| integration host factor, alpha subunit [Streptomyces viridochromogenes DSM 40736] gi|292832961|gb|EFF91310.1| DNA-binding protein HU [Streptomyces sp. e14] gi|302469393|gb|EFL32486.1| integration host factor, alpha subunit [Streptomyces viridochromogenes DSM 40736] Length = 93 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFADVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88 >gi|315926169|ref|ZP_07922369.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC 23263] gi|315620613|gb|EFV00594.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC 23263] Length = 96 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+ V +++K GLS+KD+ + + L I ++ GE + + +F TF + R G Sbjct: 6 VKKSEFVSAMAKNAGLSKKDTRKELDALIKIIMETVKEGEKVLLMNFGTFDCYYRQGRPG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + + F+A K+ + Sbjct: 66 SNPRTGEPIDVAACYSPRFRAGRAFKRAL 94 >gi|121594958|ref|YP_986854.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|222110394|ref|YP_002552658.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] gi|120607038|gb|ABM42778.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|221729838|gb|ACM32658.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] Length = 90 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALK 86 >gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054] Length = 226 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 7/113 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++++++ G RK + V + + + + V G+ + ++ F TF ++ +R Sbjct: 1 MNKAQLVEAVAEQLG-GRKAAAEAVDAVLDTMVRAVVAGDRVSVTGFGTFEKVERSARFA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGSY 114 RN QT + VK+ V F+ K + +K KD + +P GS Sbjct: 60 RNPQTGERVKVKKTAVPRFRPGQGFKDLVSGS---KKLPKDGPSVKKAPKGSL 109 >gi|307329817|ref|ZP_07608972.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] gi|306884546|gb|EFN15577.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V GE + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVAGERVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|257125666|ref|YP_003163780.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] gi|257049605|gb|ACV38789.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] Length = 93 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + V + +K G ++K + V + V+GE I+ + TF VK++ +R G Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNAFLETAEEFLVKGENIQFVGWGTFEVKERAAREG 60 Query: 65 RNLQTNQEVKID 76 RN T ++I+ Sbjct: 61 RNPSTGDPIQIE 72 >gi|255592017|ref|XP_002535650.1| Integration host factor beta-subunit, putative [Ricinus communis] gi|223522397|gb|EEF26731.1| Integration host factor beta-subunit, putative [Ricinus communis] Length = 93 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ E L++KD R V + + ++ G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMINALEAGGRVELRGFGALSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK+ L+ R+ Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRARL 90 >gi|222099394|ref|YP_002533962.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359] gi|221571784|gb|ACM22596.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359] Length = 90 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++K+ G +KD + + I ++ +GE +++ F +F V++ +R G Sbjct: 1 MNKKELVDRVAKKAGAKKKDVKVILDAVLETITEALAKGEKVQLVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I R+V F+ LK+++ Sbjct: 61 VNPQTKKPITIPERKVPKFRPGKALKEKV 89 >gi|85057759|ref|YP_456675.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789864|gb|ABC65596.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 106 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/96 (21%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK---ISSFATFHVKQKGS 61 + + ++ ++++ G+++K++ +F+ I + E K ++ F TF K + + Sbjct: 1 MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R G+N +T + + I ++V FK S +LK +++ + Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLKIFLLNKI 96 >gi|269127666|ref|YP_003301036.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] gi|268312624|gb|ACY98998.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] Length = 92 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +IS+ G S+K + V + I ++ +G+ + I+ F +F ++ +R Sbjct: 1 MNKRELVDAISERLG-SKKAAAEAVDAILETIQNAVAKGDKVAITGFGSFEKAERPARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + +++ V F+A S K Sbjct: 60 RNPATGKTIEVPATSVPKFRAGSDFK 85 >gi|162447729|ref|YP_001620861.1| DNA binding protein [Acholeplasma laidlawii PG-8A] gi|161985836|gb|ABX81485.1| DNA binding protein, histone-like protein [Acholeplasma laidlawii PG-8A] Length = 90 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 18/86 (20%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++ + +++ + + V + + + ++ + E + ++ F TF V+ + +R G Sbjct: 1 MNKTELVALVADKAEVTQAMAEKVVNSFVDVVTETLSKDEKVVVTGFGTFEVRNRVARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N +T +E+ + ++ FKA +LK Sbjct: 61 KNPRTGEEIIVPAQKTPAFKAGKLLK 86 >gi|313672337|ref|YP_004050448.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939093|gb|ADR18285.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 92 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++E LS++ V +FN I + E ++I F +F V++K + Sbjct: 1 MNKSELIEKIAEENPHLSKRQVEFIVNGVFNSIKSALESDEKVEIRGFGSFKVRKKNRKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T ++V ++ + V FK S +K Sbjct: 61 ARNPKTGEKVIVEAKSVPYFKPSREIK 87 >gi|167644077|ref|YP_001681740.1| integration host factor subunit beta [Caulobacter sp. K31] gi|226709785|sp|B0T273|IHFB_CAUSK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|167346507|gb|ABZ69242.1| integration host factor, beta subunit [Caulobacter sp. K31] Length = 94 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ E L++KD R V + + + G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + V FK+ L+ R+ D Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRGRLNAD 93 >gi|15640302|ref|NP_229929.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586341|ref|ZP_01676130.1| DNA-binding protein HU [Vibrio cholerae 2740-80] gi|121727076|ref|ZP_01680267.1| DNA-binding protein HU [Vibrio cholerae V52] gi|147674530|ref|YP_001218528.1| DNA-binding protein HU [Vibrio cholerae O395] gi|153801528|ref|ZP_01956114.1| DNA-binding protein HU [Vibrio cholerae MZO-3] gi|153818506|ref|ZP_01971173.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457] gi|153826741|ref|ZP_01979408.1| DNA-binding protein HU [Vibrio cholerae MZO-2] gi|153830400|ref|ZP_01983067.1| DNA-binding protein HU [Vibrio cholerae 623-39] gi|227080487|ref|YP_002809038.1| DNA-binding protein HU [Vibrio cholerae M66-2] gi|229506930|ref|ZP_04396438.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286] gi|229509301|ref|ZP_04398784.1| DNA-binding protein HU-alpha [Vibrio cholerae B33] gi|229512729|ref|ZP_04402197.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21] gi|229516247|ref|ZP_04405695.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9] gi|229521010|ref|ZP_04410431.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80] gi|229524780|ref|ZP_04414185.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426] gi|229527230|ref|ZP_04416623.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)] gi|229606441|ref|YP_002877089.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236] gi|254225659|ref|ZP_04919266.1| DNA-binding protein HU [Vibrio cholerae V51] gi|254286255|ref|ZP_04961214.1| DNA-binding protein HU [Vibrio cholerae AM-19226] gi|254851407|ref|ZP_05240757.1| DNA-binding protein HU [Vibrio cholerae MO10] gi|255744076|ref|ZP_05418030.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101] gi|262161965|ref|ZP_06030982.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1] gi|262168021|ref|ZP_06035720.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27] gi|262192520|ref|ZP_06050670.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93] gi|297581737|ref|ZP_06943659.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385] gi|298500908|ref|ZP_07010710.1| DNA-binding protein HU [Vibrio cholerae MAK 757] gi|14194652|sp|Q9KV83|DBHA_VIBCH RecName: Full=DNA-binding protein HU-alpha gi|9654683|gb|AAF93448.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549461|gb|EAX59489.1| DNA-binding protein HU [Vibrio cholerae 2740-80] gi|121630587|gb|EAX62977.1| DNA-binding protein HU [Vibrio cholerae V52] gi|124122933|gb|EAY41676.1| DNA-binding protein HU [Vibrio cholerae MZO-3] gi|125621779|gb|EAZ50106.1| DNA-binding protein HU [Vibrio cholerae V51] gi|126510982|gb|EAZ73576.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457] gi|146316413|gb|ABQ20952.1| DNA-binding protein HU [Vibrio cholerae O395] gi|148874134|gb|EDL72269.1| DNA-binding protein HU [Vibrio cholerae 623-39] gi|149739456|gb|EDM53694.1| DNA-binding protein HU [Vibrio cholerae MZO-2] gi|150423670|gb|EDN15612.1| DNA-binding protein HU [Vibrio cholerae AM-19226] gi|227008375|gb|ACP04587.1| DNA-binding protein HU [Vibrio cholerae M66-2] gi|227012115|gb|ACP08325.1| DNA-binding protein HU [Vibrio cholerae O395] gi|229335238|gb|EEO00722.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)] gi|229338361|gb|EEO03378.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426] gi|229341895|gb|EEO06896.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80] gi|229346673|gb|EEO11643.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9] gi|229350239|gb|EEO15191.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21] gi|229353616|gb|EEO18553.1| DNA-binding protein HU-alpha [Vibrio cholerae B33] gi|229356035|gb|EEO20954.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286] gi|229369096|gb|ACQ59519.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236] gi|254847112|gb|EET25526.1| DNA-binding protein HU [Vibrio cholerae MO10] gi|255738341|gb|EET93732.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101] gi|262023554|gb|EEY42256.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27] gi|262028343|gb|EEY46999.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1] gi|262031565|gb|EEY50153.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93] gi|297534144|gb|EFH72983.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385] gi|297540412|gb|EFH76471.1| DNA-binding protein HU [Vibrio cholerae MAK 757] gi|327483145|gb|AEA77552.1| DNA-binding protein HU-alpha [Vibrio cholerae LMA3894-4] Length = 90 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V F A LK I Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAI 89 >gi|224024934|ref|ZP_03643300.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM 18228] gi|224018170|gb|EEF76168.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM 18228] Length = 95 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 39/83 (46%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 +S+ G + KD+ V +L + + + F TF VK+K R+ N T Q + Sbjct: 10 LSRRLGYTNKDAAVLVASLVDIMAQELQESNVLTFQEFGTFEVKKKMERIVVNPVTRQRL 69 Query: 74 KIDPRRVVVFKASSILKKRIMDD 96 + P+ + FK LK ++ ++ Sbjct: 70 LVPPKLSLTFKPCPALKGKVKNE 92 >gi|15800773|ref|NP_286787.1| integration host factor subunit beta [Escherichia coli O157:H7 EDL933] gi|15830249|ref|NP_309022.1| integration host factor subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16128879|ref|NP_415432.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|24112321|ref|NP_706831.1| integration host factor subunit beta [Shigella flexneri 2a str. 301] gi|26246937|ref|NP_752977.1| integration host factor subunit beta [Escherichia coli CFT073] gi|30062447|ref|NP_836618.1| integration host factor subunit beta [Shigella flexneri 2a str. 2457T] gi|74311469|ref|YP_309888.1| integration host factor subunit beta [Shigella sonnei Ss046] gi|82544651|ref|YP_408598.1| integration host factor subunit beta [Shigella boydii Sb227] gi|82777565|ref|YP_403914.1| integration host factor subunit beta [Shigella dysenteriae Sd197] gi|89107762|ref|AP_001542.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|91210013|ref|YP_539999.1| integration host factor subunit beta [Escherichia coli UTI89] gi|110641109|ref|YP_668839.1| integration host factor subunit beta [Escherichia coli 536] gi|110804920|ref|YP_688440.1| integration host factor subunit beta [Shigella flexneri 5 str. 8401] gi|157157201|ref|YP_001462130.1| integration host factor subunit beta [Escherichia coli E24377A] gi|157160434|ref|YP_001457752.1| integration host factor subunit beta [Escherichia coli HS] gi|168751175|ref|ZP_02776197.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168757004|ref|ZP_02782011.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168762953|ref|ZP_02787960.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168769907|ref|ZP_02794914.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168776237|ref|ZP_02801244.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168784109|ref|ZP_02809116.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168787341|ref|ZP_02812348.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168801405|ref|ZP_02826412.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC508] gi|170020686|ref|YP_001725640.1| integration host factor subunit beta [Escherichia coli ATCC 8739] gi|170080570|ref|YP_001729890.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170683232|ref|YP_001744258.1| integration host factor subunit beta [Escherichia coli SMS-3-5] gi|170769200|ref|ZP_02903653.1| integration host factor, beta subunit [Escherichia albertii TW07627] gi|187733349|ref|YP_001880893.1| integration host factor subunit beta [Shigella boydii CDC 3083-94] gi|188493972|ref|ZP_03001242.1| integration host factor, beta subunit [Escherichia coli 53638] gi|191166992|ref|ZP_03028815.1| integration host factor, beta subunit [Escherichia coli B7A] gi|191172063|ref|ZP_03033607.1| integration host factor, beta subunit [Escherichia coli F11] gi|193064687|ref|ZP_03045766.1| integration host factor, beta subunit [Escherichia coli E22] gi|193070745|ref|ZP_03051680.1| integration host factor, beta subunit [Escherichia coli E110019] gi|194428394|ref|ZP_03060935.1| integration host factor, beta subunit [Escherichia coli B171] gi|194431402|ref|ZP_03063694.1| integration host factor, beta subunit [Shigella dysenteriae 1012] gi|194438689|ref|ZP_03070776.1| integration host factor, beta subunit [Escherichia coli 101-1] gi|195940069|ref|ZP_03085451.1| integration host factor subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208809443|ref|ZP_03251780.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208814934|ref|ZP_03256113.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208822709|ref|ZP_03263028.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209396562|ref|YP_002269584.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209918162|ref|YP_002292246.1| integration host factor subunit beta [Escherichia coli SE11] gi|217325996|ref|ZP_03442080.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218553499|ref|YP_002386412.1| integration host factor subunit beta [Escherichia coli IAI1] gi|218557817|ref|YP_002390730.1| integration host factor subunit beta [Escherichia coli S88] gi|218688752|ref|YP_002396964.1| integration host factor subunit beta [Escherichia coli ED1a] gi|218694385|ref|YP_002402052.1| integration host factor subunit beta [Escherichia coli 55989] gi|218700569|ref|YP_002408198.1| integration host factor subunit beta [Escherichia coli IAI39] gi|218704339|ref|YP_002411858.1| integration host factor subunit beta [Escherichia coli UMN026] gi|227884123|ref|ZP_04001928.1| integration host factor subunit beta [Escherichia coli 83972] gi|237707100|ref|ZP_04537581.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA] gi|238900170|ref|YP_002925966.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli BW2952] gi|253774059|ref|YP_003036890.1| integration host factor subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161026|ref|YP_003044134.1| integration host factor subunit beta [Escherichia coli B str. REL606] gi|254792111|ref|YP_003076948.1| integration host factor subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256020960|ref|ZP_05434825.1| integration host factor subunit beta [Shigella sp. D9] gi|256023387|ref|ZP_05437252.1| integration host factor subunit beta [Escherichia sp. 4_1_40B] gi|260843162|ref|YP_003220940.1| integration host factor, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260854203|ref|YP_003228094.1| integration host factor, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260867084|ref|YP_003233486.1| integration host factor, beta subunit [Escherichia coli O111:H- str. 11128] gi|261227415|ref|ZP_05941696.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256162|ref|ZP_05948695.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281913|ref|YP_003498731.1| Integration host factor subunit beta [Escherichia coli O55:H7 str. CB9615] gi|293404217|ref|ZP_06648211.1| ihfB [Escherichia coli FVEC1412] gi|293409289|ref|ZP_06652865.1| integration host factor [Escherichia coli B354] gi|293414192|ref|ZP_06656841.1| integration host factor [Escherichia coli B185] gi|293433209|ref|ZP_06661637.1| integration host factor [Escherichia coli B088] gi|297520621|ref|ZP_06939007.1| integration host factor subunit beta [Escherichia coli OP50] gi|298379997|ref|ZP_06989602.1| ihfB [Escherichia coli FVEC1302] gi|300816984|ref|ZP_07097203.1| integration host factor, beta subunit [Escherichia coli MS 107-1] gi|300823652|ref|ZP_07103779.1| integration host factor, beta subunit [Escherichia coli MS 119-7] gi|300901658|ref|ZP_07119718.1| integration host factor, beta subunit [Escherichia coli MS 198-1] gi|300902929|ref|ZP_07120874.1| integration host factor, beta subunit [Escherichia coli MS 84-1] gi|300921051|ref|ZP_07137437.1| integration host factor, beta subunit [Escherichia coli MS 115-1] gi|300925410|ref|ZP_07141295.1| integration host factor, beta subunit [Escherichia coli MS 182-1] gi|300929607|ref|ZP_07145069.1| integration host factor, beta subunit [Escherichia coli MS 187-1] gi|300937744|ref|ZP_07152545.1| integration host factor, beta subunit [Escherichia coli MS 21-1] gi|300949726|ref|ZP_07163704.1| integration host factor, beta subunit [Escherichia coli MS 116-1] gi|300955440|ref|ZP_07167814.1| integration host factor, beta subunit [Escherichia coli MS 175-1] gi|300978463|ref|ZP_07174278.1| integration host factor, beta subunit [Escherichia coli MS 45-1] gi|300983138|ref|ZP_07176452.1| integration host factor, beta subunit [Escherichia coli MS 200-1] gi|301022406|ref|ZP_07186289.1| integration host factor, beta subunit [Escherichia coli MS 196-1] gi|301023015|ref|ZP_07186826.1| integration host factor, beta subunit [Escherichia coli MS 69-1] gi|301047829|ref|ZP_07194880.1| integration host factor, beta subunit [Escherichia coli MS 185-1] gi|301302480|ref|ZP_07208611.1| integration host factor, beta subunit [Escherichia coli MS 124-1] gi|301326623|ref|ZP_07219956.1| integration host factor, beta subunit [Escherichia coli MS 78-1] gi|301643432|ref|ZP_07243480.1| integration host factor, beta subunit [Escherichia coli MS 146-1] gi|306812635|ref|ZP_07446828.1| integration host factor subunit beta [Escherichia coli NC101] gi|307137541|ref|ZP_07496897.1| integration host factor subunit beta [Escherichia coli H736] gi|307311701|ref|ZP_07591341.1| integration host factor, beta subunit [Escherichia coli W] gi|309787783|ref|ZP_07682393.1| integration host factor, beta subunit [Shigella dysenteriae 1617] gi|309795104|ref|ZP_07689524.1| integration host factor, beta subunit [Escherichia coli MS 145-7] gi|312969022|ref|ZP_07783229.1| integration host factor, beta subunit [Escherichia coli 2362-75] gi|312971040|ref|ZP_07785219.1| integration host factor, beta subunit [Escherichia coli 1827-70] gi|331641438|ref|ZP_08342573.1| integration host factor, beta subunit [Escherichia coli H736] gi|331646177|ref|ZP_08347280.1| integration host factor, beta subunit [Escherichia coli M605] gi|331651932|ref|ZP_08352951.1| integration host factor, beta subunit [Escherichia coli M718] gi|331656983|ref|ZP_08357945.1| integration host factor, beta subunit [Escherichia coli TA206] gi|331662325|ref|ZP_08363248.1| integration host factor, beta subunit [Escherichia coli TA143] gi|331667289|ref|ZP_08368154.1| integration host factor, beta subunit [Escherichia coli TA271] gi|331676700|ref|ZP_08377396.1| integration host factor, beta subunit [Escherichia coli H591] gi|331682419|ref|ZP_08383038.1| integration host factor, beta subunit [Escherichia coli H299] gi|332282183|ref|ZP_08394596.1| integration host factor (IHF) DNA-binding protein beta subunit [Shigella sp. D9] gi|67466112|sp|P0A6Y1|IHFB_ECOLI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|67466113|sp|P0A6Y2|IHFB_ECOL6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|67466114|sp|P0A6Y3|IHFB_ECO57 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|67466115|sp|P0A6Y4|IHFB_SHIFL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|122990837|sp|Q1RDU6|IHFB_ECOUT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123342125|sp|Q0SX03|IHFB_SHIF8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123344183|sp|Q0TJE1|IHFB_ECOL5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123741971|sp|Q31YT8|IHFB_SHIBS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123742113|sp|Q32E32|IHFB_SHIDS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123773538|sp|Q3Z3K9|IHFB_SHISS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918545|sp|A7ZK01|IHFB_ECO24 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918546|sp|A7ZYL5|IHFB_ECOHS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045036|sp|B1IW19|IHFB_ECOLC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709786|sp|B7MHM1|IHFB_ECO45 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709787|sp|B5YT46|IHFB_ECO5E RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709788|sp|B7NM62|IHFB_ECO7I RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709789|sp|B7M841|IHFB_ECO8A RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709790|sp|B1X852|IHFB_ECODH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709791|sp|B7NAR1|IHFB_ECOLU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709792|sp|B6I8Y4|IHFB_ECOSE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709793|sp|B1LJV1|IHFB_ECOSM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709814|sp|B2TUG9|IHFB_SHIB3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803533|sp|B7LDA4|IHFB_ECO55 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803534|sp|B7MS27|IHFB_ECO81 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|259492034|sp|C4ZQ38|IHFB_ECOBW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1942276|pdb|1IHF|B Chain B, Integration Host FactorDNA COMPLEX gi|34811470|pdb|1OWG|B Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H' Site (T44a) gi|119389942|pdb|2HT0|B Chain B, Ihf Bound To Doubly Nicked Dna gi|12514078|gb|AAG55397.1|AE005280_8 integration host factor (IHF), beta subunit; site-specific recombination [Escherichia coli O157:H7 str. EDL933] gi|26107337|gb|AAN79520.1|AE016758_124 Integration host factor beta-subunit [Escherichia coli CFT073] gi|414749|emb|CAA28557.1| IHF (AA 1-93) [Escherichia coli K-12] gi|1651440|dbj|BAA35656.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K12 substr. W3110] gi|1787141|gb|AAC73998.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13360454|dbj|BAB34418.1| integration host factor (IHF) beta subunit [Escherichia coli O157:H7 str. Sakai] gi|24051181|gb|AAN42538.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a str. 301] gi|30040693|gb|AAP16424.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a str. 2457T] gi|68304094|gb|AAY89705.1| IhfB [Escherichia coli LW1655F+] gi|73854946|gb|AAZ87653.1| integration host factor (IHF), beta subunit [Shigella sonnei Ss046] gi|81241713|gb|ABB62423.1| integration host factor, beta subunit [Shigella dysenteriae Sd197] gi|81246062|gb|ABB66770.1| integration host factor (IHF), beta subunit [Shigella boydii Sb227] gi|91071587|gb|ABE06468.1| beta subunit of IHF transcriptional dual regulator [Escherichia coli UTI89] gi|110342701|gb|ABG68938.1| integration host factor beta-subunit [Escherichia coli 536] gi|110614468|gb|ABF03135.1| integration host factor beta subunit [Shigella flexneri 5 str. 8401] gi|157066114|gb|ABV05369.1| integration host factor, beta subunit [Escherichia coli HS] gi|157079231|gb|ABV18939.1| integration host factor, beta subunit [Escherichia coli E24377A] gi|169755614|gb|ACA78313.1| integration host factor, beta subunit [Escherichia coli ATCC 8739] gi|169888405|gb|ACB02112.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170121852|gb|EDS90783.1| integration host factor, beta subunit [Escherichia albertii TW07627] gi|170520950|gb|ACB19128.1| integration host factor, beta subunit [Escherichia coli SMS-3-5] gi|187430341|gb|ACD09615.1| integration host factor, beta subunit [Shigella boydii CDC 3083-94] gi|187768389|gb|EDU32233.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188014737|gb|EDU52859.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|188489171|gb|EDU64274.1| integration host factor, beta subunit [Escherichia coli 53638] gi|188998657|gb|EDU67643.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189355928|gb|EDU74347.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189361153|gb|EDU79572.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189366830|gb|EDU85246.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189372671|gb|EDU91087.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189376433|gb|EDU94849.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC508] gi|190902986|gb|EDV62712.1| integration host factor, beta subunit [Escherichia coli B7A] gi|190907590|gb|EDV67185.1| integration host factor, beta subunit [Escherichia coli F11] gi|192927744|gb|EDV82359.1| integration host factor, beta subunit [Escherichia coli E22] gi|192955938|gb|EDV86406.1| integration host factor, beta subunit [Escherichia coli E110019] gi|194413609|gb|EDX29890.1| integration host factor, beta subunit [Escherichia coli B171] gi|194420227|gb|EDX36304.1| integration host factor, beta subunit [Shigella dysenteriae 1012] gi|194422321|gb|EDX38321.1| integration host factor, beta subunit [Escherichia coli 101-1] gi|208729244|gb|EDZ78845.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208731582|gb|EDZ80270.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208738194|gb|EDZ85877.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209157962|gb|ACI35395.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209774858|gb|ACI85741.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774860|gb|ACI85742.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774862|gb|ACI85743.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774864|gb|ACI85744.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774866|gb|ACI85745.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209911421|dbj|BAG76495.1| integration host factor beta subunit [Escherichia coli SE11] gi|217322217|gb|EEC30641.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218351117|emb|CAU96821.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli 55989] gi|218360267|emb|CAQ97817.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli IAI1] gi|218364586|emb|CAR02272.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli S88] gi|218370555|emb|CAR18362.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli IAI39] gi|218426316|emb|CAR07141.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli ED1a] gi|218431436|emb|CAR12314.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli UMN026] gi|222032643|emb|CAP75382.1| Integration host factor subunit beta [Escherichia coli LF82] gi|226898310|gb|EEH84569.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA] gi|227838875|gb|EEJ49341.1| integration host factor subunit beta [Escherichia coli 83972] gi|238861522|gb|ACR63520.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli BW2952] gi|242376727|emb|CAQ31440.1| integration host factor (IHF), beta subunit, subunit of IHF transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325103|gb|ACT29705.1| integration host factor, beta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972927|gb|ACT38598.1| integration host factor subunit beta [Escherichia coli B str. REL606] gi|253977141|gb|ACT42811.1| integration host factor subunit beta [Escherichia coli BL21(DE3)] gi|254591511|gb|ACT70872.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257752852|dbj|BAI24354.1| integration host factor, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257758309|dbj|BAI29806.1| integration host factor, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257763440|dbj|BAI34935.1| integration host factor, beta subunit [Escherichia coli O111:H- str. 11128] gi|260449942|gb|ACX40364.1| integration host factor, beta subunit [Escherichia coli DH1] gi|281178043|dbj|BAI54373.1| integration host factor beta subunit [Escherichia coli SE15] gi|281600272|gb|ADA73256.1| Integration host factor subunit beta [Shigella flexneri 2002017] gi|284920763|emb|CBG33826.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli 042] gi|290761786|gb|ADD55747.1| Integration host factor subunit beta [Escherichia coli O55:H7 str. CB9615] gi|291324028|gb|EFE63450.1| integration host factor [Escherichia coli B088] gi|291428803|gb|EFF01828.1| ihfB [Escherichia coli FVEC1412] gi|291434250|gb|EFF07223.1| integration host factor [Escherichia coli B185] gi|291469757|gb|EFF12241.1| integration host factor [Escherichia coli B354] gi|294490499|gb|ADE89255.1| integration host factor, beta subunit [Escherichia coli IHE3034] gi|298279695|gb|EFI21203.1| ihfB [Escherichia coli FVEC1302] gi|299881247|gb|EFI89458.1| integration host factor, beta subunit [Escherichia coli MS 196-1] gi|300300288|gb|EFJ56673.1| integration host factor, beta subunit [Escherichia coli MS 185-1] gi|300306972|gb|EFJ61492.1| integration host factor, beta subunit [Escherichia coli MS 200-1] gi|300317663|gb|EFJ67447.1| integration host factor, beta subunit [Escherichia coli MS 175-1] gi|300354951|gb|EFJ70821.1| integration host factor, beta subunit [Escherichia coli MS 198-1] gi|300397276|gb|EFJ80814.1| integration host factor, beta subunit [Escherichia coli MS 69-1] gi|300405071|gb|EFJ88609.1| integration host factor, beta subunit [Escherichia coli MS 84-1] gi|300409640|gb|EFJ93178.1| integration host factor, beta subunit [Escherichia coli MS 45-1] gi|300411989|gb|EFJ95299.1| integration host factor, beta subunit [Escherichia coli MS 115-1] gi|300418480|gb|EFK01791.1| integration host factor, beta subunit [Escherichia coli MS 182-1] gi|300450874|gb|EFK14494.1| integration host factor, beta subunit [Escherichia coli MS 116-1] gi|300457251|gb|EFK20744.1| integration host factor, beta subunit [Escherichia coli MS 21-1] gi|300462444|gb|EFK25937.1| integration host factor, beta subunit [Escherichia coli MS 187-1] gi|300523852|gb|EFK44921.1| integration host factor, beta subunit [Escherichia coli MS 119-7] gi|300530336|gb|EFK51398.1| integration host factor, beta subunit [Escherichia coli MS 107-1] gi|300842319|gb|EFK70079.1| integration host factor, beta subunit [Escherichia coli MS 124-1] gi|300846706|gb|EFK74466.1| integration host factor, beta subunit [Escherichia coli MS 78-1] gi|301078146|gb|EFK92952.1| integration host factor, beta subunit [Escherichia coli MS 146-1] gi|305853398|gb|EFM53837.1| integration host factor subunit beta [Escherichia coli NC101] gi|306908256|gb|EFN38755.1| integration host factor, beta subunit [Escherichia coli W] gi|307552751|gb|ADN45526.1| integration host factor, beta subunit [Escherichia coli ABU 83972] gi|307627661|gb|ADN71965.1| integration host factor subunit beta [Escherichia coli UM146] gi|308121408|gb|EFO58670.1| integration host factor, beta subunit [Escherichia coli MS 145-7] gi|308924182|gb|EFP69679.1| integration host factor, beta subunit [Shigella dysenteriae 1617] gi|309701188|emb|CBJ00488.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli ETEC H10407] gi|310336801|gb|EFQ01968.1| integration host factor, beta subunit [Escherichia coli 1827-70] gi|312286424|gb|EFR14337.1| integration host factor, beta subunit [Escherichia coli 2362-75] gi|312945432|gb|ADR26259.1| integration host factor subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313650849|gb|EFS15250.1| integration host factor, beta subunit [Shigella flexneri 2a str. 2457T] gi|315060197|gb|ADT74524.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli W] gi|315135560|dbj|BAJ42719.1| integration host factor subunit beta [Escherichia coli DH1] gi|315257953|gb|EFU37921.1| integration host factor, beta subunit [Escherichia coli MS 85-1] gi|315287525|gb|EFU46936.1| integration host factor, beta subunit [Escherichia coli MS 110-3] gi|315291230|gb|EFU50590.1| integration host factor, beta subunit [Escherichia coli MS 153-1] gi|315296192|gb|EFU55500.1| integration host factor, beta subunit [Escherichia coli MS 16-3] gi|315619106|gb|EFU99686.1| integration host factor, beta subunit [Escherichia coli 3431] gi|320173253|gb|EFW48462.1| Integration host factor beta subunit [Shigella dysenteriae CDC 74-1112] gi|320182020|gb|EFW56925.1| Integration host factor beta subunit [Shigella boydii ATCC 9905] gi|320184256|gb|EFW59069.1| Integration host factor beta subunit [Shigella flexneri CDC 796-83] gi|320192602|gb|EFW67243.1| Integration host factor beta subunit [Escherichia coli O157:H7 str. EC1212] gi|320196594|gb|EFW71217.1| Integration host factor beta subunit [Escherichia coli WV_060327] gi|320202308|gb|EFW76879.1| Integration host factor beta subunit [Escherichia coli EC4100B] gi|320637780|gb|EFX07572.1| integration host factor subunit beta [Escherichia coli O157:H7 str. G5101] gi|320642905|gb|EFX12106.1| integration host factor subunit beta [Escherichia coli O157:H- str. 493-89] gi|320648362|gb|EFX17017.1| integration host factor subunit beta [Escherichia coli O157:H- str. H 2687] gi|320653678|gb|EFX21752.1| integration host factor subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659823|gb|EFX27379.1| integration host factor subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320664292|gb|EFX31443.1| integration host factor subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323157201|gb|EFZ43324.1| integration host factor, beta subunit [Escherichia coli EPECa14] gi|323159538|gb|EFZ45518.1| integration host factor, beta subunit [Escherichia coli E128010] gi|323165379|gb|EFZ51166.1| integration host factor, beta subunit [Shigella sonnei 53G] gi|323174987|gb|EFZ60602.1| integration host factor, beta subunit [Escherichia coli LT-68] gi|323175465|gb|EFZ61060.1| integration host factor, beta subunit [Escherichia coli 1180] gi|323185382|gb|EFZ70746.1| integration host factor, beta subunit [Escherichia coli 1357] gi|323190732|gb|EFZ76001.1| integration host factor, beta subunit [Escherichia coli RN587/1] gi|323379243|gb|ADX51511.1| integration host factor, beta subunit [Escherichia coli KO11] gi|323938018|gb|EGB34280.1| integration host protein [Escherichia coli E1520] gi|323942828|gb|EGB38993.1| integration host protein [Escherichia coli E482] gi|323947299|gb|EGB43307.1| integration host protein [Escherichia coli H120] gi|323953381|gb|EGB49247.1| integration host protein [Escherichia coli H252] gi|323958217|gb|EGB53926.1| integration host protein [Escherichia coli H263] gi|323962904|gb|EGB58478.1| integration host protein [Escherichia coli H489] gi|323967159|gb|EGB62583.1| integration host protein [Escherichia coli M863] gi|323973213|gb|EGB68405.1| integration host protein [Escherichia coli TA007] gi|323976701|gb|EGB71789.1| integration host protein [Escherichia coli TW10509] gi|324009836|gb|EGB79055.1| integration host factor, beta subunit [Escherichia coli MS 57-2] gi|324012972|gb|EGB82191.1| integration host factor, beta subunit [Escherichia coli MS 60-1] gi|324019079|gb|EGB88298.1| integration host factor, beta subunit [Escherichia coli MS 117-3] gi|324117223|gb|EGC11131.1| integration host protein [Escherichia coli E1167] gi|326338193|gb|EGD62022.1| Integration host factor beta subunit [Escherichia coli O157:H7 str. 1125] gi|326346170|gb|EGD69908.1| Integration host factor beta subunit [Escherichia coli O157:H7 str. 1044] gi|327253702|gb|EGE65331.1| integration host factor, beta subunit [Escherichia coli STEC_7v] gi|330910692|gb|EGH39202.1| integration host factor beta subunit [Escherichia coli AA86] gi|331038236|gb|EGI10456.1| integration host factor, beta subunit [Escherichia coli H736] gi|331044929|gb|EGI17056.1| integration host factor, beta subunit [Escherichia coli M605] gi|331050210|gb|EGI22268.1| integration host factor, beta subunit [Escherichia coli M718] gi|331055231|gb|EGI27240.1| integration host factor, beta subunit [Escherichia coli TA206] gi|331060747|gb|EGI32711.1| integration host factor, beta subunit [Escherichia coli TA143] gi|331065645|gb|EGI37538.1| integration host factor, beta subunit [Escherichia coli TA271] gi|331075389|gb|EGI46687.1| integration host factor, beta subunit [Escherichia coli H591] gi|331080050|gb|EGI51229.1| integration host factor, beta subunit [Escherichia coli H299] gi|332093267|gb|EGI98327.1| integration host factor, beta subunit [Shigella boydii 5216-82] gi|332104535|gb|EGJ07881.1| integration host factor (IHF) DNA-binding protein beta subunit [Shigella sp. D9] gi|332760079|gb|EGJ90377.1| integration host factor, beta subunit [Shigella flexneri 2747-71] gi|332762681|gb|EGJ92944.1| integration host factor, beta subunit [Shigella flexneri K-671] gi|333006353|gb|EGK25861.1| integration host factor, beta subunit [Shigella flexneri VA-6] gi|333006934|gb|EGK26429.1| integration host factor, beta subunit [Shigella flexneri K-218] gi|333008890|gb|EGK28350.1| integration host factor, beta subunit [Shigella flexneri K-272] gi|333020034|gb|EGK39305.1| integration host factor, beta subunit [Shigella flexneri K-304] gi|333020200|gb|EGK39470.1| integration host factor, beta subunit [Shigella flexneri K-227] Length = 94 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|218249932|ref|YP_002374755.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7] gi|223888785|ref|ZP_03623376.1| DNA-binding protein HU [Borrelia burgdorferi 64b] gi|226321550|ref|ZP_03797076.1| DNA-binding protein HU [Borrelia burgdorferi Bol26] gi|134104949|pdb|2NP2|A Chain A, Hbb-Dna Complex gi|134104950|pdb|2NP2|B Chain B, Hbb-Dna Complex gi|1280531|gb|AAC73070.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280535|gb|AAC73072.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1372991|gb|AAB41460.1| Hbb [Borrelia burgdorferi] gi|1372994|gb|AAB41461.1| Hbb [Borrelia burgdorferi] gi|73762240|gb|AAZ83608.1| Hbb [Borrelia burgdorferi] gi|89145706|gb|ABD62042.1| Hbb [Borrelia burgdorferi 297] gi|89145708|gb|ABD62043.1| Hbb [Borrelia burgdorferi] gi|218165120|gb|ACK75181.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7] gi|223885601|gb|EEF56700.1| DNA-binding protein HU [Borrelia burgdorferi 64b] gi|226232739|gb|EEH31492.1| DNA-binding protein HU [Borrelia burgdorferi Bol26] Length = 108 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V I+ L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|123441853|ref|YP_001005836.1| integration host factor subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162205|ref|YP_004298782.1| integration host factor subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166975896|sp|A1JMJ0|IHFB_YERE8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|122088814|emb|CAL11620.1| integration host factor beta-subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325666435|gb|ADZ43079.1| integration host factor subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862895|emb|CBX73032.1| integration host factor subunit beta [Yersinia enterocolitica W22703] Length = 94 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPTKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDR 89 >gi|238752802|ref|ZP_04614270.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380] gi|238709000|gb|EEQ01250.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380] Length = 67 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 I +S G+ +++ F TF V + R GRN QT +E+KI V F + LK + Sbjct: 8 ITESLKDGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKALKDSV 65 >gi|1280553|gb|AAC73078.1| histone-like protein HBbu [Borrelia garinii] gi|1280555|gb|AAC73079.1| histone-like protein HBbu [Borrelia garinii] Length = 108 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V I + L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQIFFNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|220922907|ref|YP_002498209.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] gi|219947514|gb|ACL57906.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] Length = 113 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R+ L++ I++ L + V T+ + + ++ V+ E I + F TF +G+R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 G N +T + V + RR V F+AS+ + R+ D + G Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLNDKVGG 95 >gi|1280591|gb|AAC73105.1| histone-like protein HBbu [Borrelia burgdorferi DN127] Length = 108 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN QT + VK+ V F+ LK+R+ Sbjct: 69 RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|189460994|ref|ZP_03009779.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM 17136] gi|198277723|ref|ZP_03210254.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM 17135] gi|265768064|ref|ZP_06095446.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|319643873|ref|ZP_07998466.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A] gi|189432333|gb|EDV01318.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM 17136] gi|198269420|gb|EDY93690.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM 17135] gi|263252315|gb|EEZ23851.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|317384614|gb|EFV65579.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A] Length = 94 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++VK IS G+ K + NE+ S + E + + F +F VK++ + Sbjct: 1 MTKSEIVKEISARTGIDGKAVLAVLEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK S Sbjct: 61 RNISKNTTMIIPAHNIPAFKPS 82 >gi|237709944|ref|ZP_04540425.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237725390|ref|ZP_04555871.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436077|gb|EEO46154.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456037|gb|EEO61758.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 474 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 49/93 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93 >gi|254374459|ref|ZP_04989941.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548] gi|151572179|gb|EDN37833.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548] Length = 66 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G+++ + F TF VK++ R GRN +T + +KI +V FKA LK Sbjct: 15 GDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKAGKGLK 62 >gi|298374475|ref|ZP_06984433.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|298268843|gb|EFI10498.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] Length = 95 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + R +LVK+++ + +++ ++ RFV + E A+ + ++ + F TF ++ R+ Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQA-WEETTTEALESDGSLMLLGFGTFSAWEQTERI 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + I R+ V FK +L K++ Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQL 89 >gi|16759852|ref|NP_455469.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764342|ref|NP_459957.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142375|ref|NP_805717.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413968|ref|YP_151043.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179506|ref|YP_215923.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146401|ref|YP_001453720.1| integration host factor subunit beta [Citrobacter koseri ATCC BAA-895] gi|161614782|ref|YP_001588747.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553021|ref|ZP_02346771.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994928|ref|ZP_02576018.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233395|ref|ZP_02658453.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237083|ref|ZP_02662141.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243747|ref|ZP_02668679.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263526|ref|ZP_02685499.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466573|ref|ZP_02700435.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822093|ref|ZP_02834093.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442716|ref|YP_002040180.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450144|ref|YP_002044974.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470393|ref|ZP_03076377.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734686|ref|YP_002114033.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248861|ref|YP_002145900.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263951|ref|ZP_03164025.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362891|ref|YP_002142528.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243808|ref|YP_002214906.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390103|ref|ZP_03216714.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929822|ref|ZP_03220843.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352189|ref|YP_002225990.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856373|ref|YP_002243024.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023562|ref|ZP_03338009.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161606|ref|ZP_03347316.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416827|ref|ZP_03349971.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424599|ref|ZP_03357382.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579894|ref|ZP_03361720.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213649374|ref|ZP_03379427.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852006|ref|ZP_03381538.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582791|ref|YP_002636589.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913245|ref|ZP_04657082.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283784738|ref|YP_003364603.1| integration host factor beta-subunit (IHF-beta) [Citrobacter rodentium ICC168] gi|289825855|ref|ZP_06545023.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54037414|sp|P64395|IHFB_SALTI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|54041369|sp|P64394|IHFB_SALTY RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|75505813|sp|Q57R19|IHFB_SALCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81677856|sp|Q5PGG9|IHFB_SALPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918543|sp|A8AIH1|IHFB_CITK8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045042|sp|A9N7V2|IHFB_SALPB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709805|sp|B5F165|IHFB_SALA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709806|sp|B5FQ55|IHFB_SALDC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709807|sp|B5QZB6|IHFB_SALEP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709808|sp|B5R8J9|IHFB_SALG2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709809|sp|B4TD42|IHFB_SALHS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709810|sp|B4T146|IHFB_SALNS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709811|sp|B5BBP5|IHFB_SALPK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709812|sp|B4TRU3|IHFB_SALSV RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803539|sp|C0PXU8|IHFB_SALPC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|25294355|pir||AD0614 integration host factor beta-chain (IHF-beta) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419494|gb|AAL19916.1| integration host factor (IHF), beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502145|emb|CAD05382.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138005|gb|AAO69566.1| integration host factor beta-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128225|gb|AAV77731.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127139|gb|AAX64842.1| integration host factor (IHF), beta subunit; site-specific recombination [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157083606|gb|ABV13284.1| hypothetical protein CKO_02160 [Citrobacter koseri ATCC BAA-895] gi|161364146|gb|ABX67914.1| hypothetical protein SPAB_02534 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401379|gb|ACF61601.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408448|gb|ACF68667.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456757|gb|EDX45596.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710188|gb|ACF89409.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630987|gb|EDX49573.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094368|emb|CAR59881.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212564|gb|ACH49961.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242206|gb|EDY24826.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289888|gb|EDY29249.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938324|gb|ACH75657.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602548|gb|EDZ01094.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320816|gb|EDZ06017.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271970|emb|CAR36814.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322456|gb|EDZ10295.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327271|gb|EDZ14035.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332451|gb|EDZ19215.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337151|gb|EDZ23915.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341519|gb|EDZ28283.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347707|gb|EDZ34338.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708176|emb|CAR32469.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467318|gb|ACN45148.1| integration host factor beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246198|emb|CBG24002.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992720|gb|ACY87605.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|282948192|emb|CBG87759.1| integration host factor beta-subunit (IHF-beta) [Citrobacter rodentium ICC168] gi|301157525|emb|CBW17015.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911968|dbj|BAJ35942.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085221|emb|CBY95007.1| Integration host factor subunit beta IHF-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223305|gb|EFX48374.1| Integration host factor beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616412|gb|EFY13321.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619662|gb|EFY16537.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622642|gb|EFY19487.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629791|gb|EFY26566.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632487|gb|EFY29233.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637018|gb|EFY33721.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641442|gb|EFY38080.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646092|gb|EFY42608.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649606|gb|EFY46037.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654092|gb|EFY50415.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658624|gb|EFY54886.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663481|gb|EFY59683.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670217|gb|EFY66357.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671453|gb|EFY67575.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676809|gb|EFY72876.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682734|gb|EFY78753.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686413|gb|EFY82395.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713975|gb|EFZ05546.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129247|gb|ADX16677.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195936|gb|EFZ81103.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199776|gb|EFZ84865.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202769|gb|EFZ87805.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209040|gb|EFZ93977.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211516|gb|EFZ96355.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217999|gb|EGA02714.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219928|gb|EGA04404.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226704|gb|EGA10900.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229801|gb|EGA13924.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233026|gb|EGA17122.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240761|gb|EGA24803.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243077|gb|EGA27098.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249760|gb|EGA33662.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252767|gb|EGA36605.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254795|gb|EGA38596.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260004|gb|EGA43632.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267995|gb|EGA51474.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269842|gb|EGA53291.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622659|gb|EGE29004.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627233|gb|EGE33576.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987873|gb|AEF06856.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 94 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|304391395|ref|ZP_07373337.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130] gi|303295624|gb|EFL89982.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130] Length = 91 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + +++ + + + + D+ GE +++ F F V ++ +R+G Sbjct: 1 MNKQELISAMAGKADMNKDQAGAALEAFIDSVTDALKSGEEVRLLGFGNFVVTRREARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +I V FK LK +I Sbjct: 61 RNPQTGAATEIAAANVARFKVGKGLKDKI 89 >gi|258648378|ref|ZP_05735847.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259] gi|260851548|gb|EEX71417.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259] Length = 94 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ R V N + DS R + + + F +F +K++ + Sbjct: 1 MTKADIVNEIAKKTGIDRVTVLTTVEAFMNSVKDSLDREQNVYLRGFGSFILKKRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTLIIPEHNIPAFKPA 82 >gi|258544425|ref|ZP_05704659.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826] gi|258520314|gb|EEV89173.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826] Length = 103 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ +++ + + + + + ++ +G+ + + F TF +++ +R G Sbjct: 1 MNKTELVDAIAAAADITKVQAGKALEAVLESVTETLKKGDKVTLIGFGTFETRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E++I FKA LK Sbjct: 61 RNPQTGKEIQIAASITPAFKAGKKLK 86 >gi|220903373|ref|YP_002478685.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867672|gb|ACL48007.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 91 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL K + + + + ++ GE++ + F +F V ++ +R Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALAAGESVTFTGFGSFKVVERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T E+ I +V F LK I Sbjct: 61 GRNPRTGMEITIPASKVAKFTPGKGLKDAI 90 >gi|209521455|ref|ZP_03270163.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|295676520|ref|YP_003605044.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] gi|209498111|gb|EDZ98258.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|295436363|gb|ADG15533.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] Length = 90 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQADISKAAAGRALDAVIAGVKSTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +KI +V F+ LK Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALK 86 >gi|171058612|ref|YP_001790961.1| histone family protein DNA-binding protein [Leptothrix cholodnii SP-6] gi|170776057|gb|ACB34196.1| histone family protein DNA-binding protein [Leptothrix cholodnii SP-6] Length = 116 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 49/87 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ +S+L++ I+++ +S+ + R + L + + +G+++ + F TF V ++ +R Sbjct: 26 TVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +KI +V F+ LK Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALK 112 >gi|332885920|gb|EGK06164.1| hypothetical protein HMPREF9456_00038 [Dysgonomonas mossii DSM 22836] Length = 91 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + V + + + DS + E + + F +F VK + + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPAHSIPAFKPA 82 >gi|332826704|gb|EGJ99526.1| hypothetical protein HMPREF9455_04122 [Dysgonomonas gadei ATCC BAA-286] Length = 91 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + V + + + DS + E + + F +F VK + + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPAHSIPAFKPA 82 >gi|253570965|ref|ZP_04848373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|319644004|ref|ZP_07998563.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A] gi|251839914|gb|EES67997.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|313157143|gb|EFR56573.1| putative DNA-binding protein HU-alpha [Alistipes sp. HGB5] gi|317384352|gb|EFV65320.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A] Length = 93 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 18/82 (21%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + + + + +S V G + + F +F +K++ + Sbjct: 1 MTKAEIVAQISRQSGIEKTVVMTVIESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N +KI + FK + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPA 82 >gi|215486037|ref|YP_002328468.1| integration host factor subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|254803532|sp|B7UMZ8|IHFB_ECO27 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|215264109|emb|CAS08453.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli O127:H6 str. E2348/69] Length = 94 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKDMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|294782111|ref|ZP_06747437.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] gi|294480752|gb|EFG28527.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] Length = 102 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +K+ L KDS R V + ++ ++GE ++ F ++ VK++ +R Sbjct: 1 MTKKEFVDAFAKKAELKLKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60 Query: 65 RNLQT 69 N QT Sbjct: 61 TNPQT 65 >gi|1280595|gb|AAC73107.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + I+ SF TF + K+ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFELRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|34762422|ref|ZP_00143422.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741782|ref|ZP_04572263.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256845110|ref|ZP_05550568.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_36A2] gi|294785602|ref|ZP_06750890.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] gi|27887890|gb|EAA24958.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429430|gb|EEO39642.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256718669|gb|EEU32224.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_36A2] gi|294487316|gb|EFG34678.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] Length = 91 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 +R ++ + V +FN + + GE + I +F V ++ R+GRN +T +EVKI R+ Sbjct: 18 TRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRLGRNPKTGEEVKIGKRKS 77 Query: 81 VVFKAS 86 + F+ Sbjct: 78 IKFRPG 83 >gi|1280573|gb|AAC73094.1| histone-like protein HBbu [Borrelia afzelii] Length = 108 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V I+ L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVW 104 >gi|237744930|ref|ZP_04575411.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|256028389|ref|ZP_05442223.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|260494711|ref|ZP_05814841.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33] gi|289766314|ref|ZP_06525692.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|229432159|gb|EEO42371.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|260197873|gb|EEW95390.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33] gi|289717869|gb|EFD81881.1| DNA-binding protein HU [Fusobacterium sp. D11] Length = 91 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 +R ++ + V +FN + + GE + I +F V ++ R+GRN +T +EVKI R+ Sbjct: 18 TRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRLGRNPKTGEEVKIGKRKS 77 Query: 81 VVFKAS 86 + F+ Sbjct: 78 IKFRPG 83 >gi|265753596|ref|ZP_06088951.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235310|gb|EEZ20834.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 474 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 49/93 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93 >gi|257456676|ref|ZP_05621869.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580] gi|257445943|gb|EEV20993.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580] Length = 112 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRVG 64 T++ +V +I K+ KD F E+ + RGE I+I F TF V+ +KG + Sbjct: 11 TKTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGM 70 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T + V VVVF+ IL Sbjct: 71 RNPKTGELVDTADHSVVVFRPGKIL 95 >gi|167948154|ref|ZP_02535228.1| integration host factor, alpha subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 104 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH--VKQKGS 61 ++T++D+ + + E GL+++++ V F EI + G +K+S F F V++K Sbjct: 2 SLTKADMAERLFDELGLNKREAKEMVEMFFEEIRRALEEGSQVKLSGFGNFDPGVEKKQR 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + + + P +V F+ LK R+ Sbjct: 62 PRSYTQKPEKRSRSPPAELVTFRPGQTLKARV 93 >gi|85057510|ref|YP_456426.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789615|gb|ABC65347.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 96 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K+I++ S + F + + + +S E + +SS F +K + + Sbjct: 1 MTKKELIKNIAEANKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++KI + +V FK S +K ++ D Sbjct: 61 GRNPQTGKKLKIPAKTIVTFKLSKTIKDKVKD 92 >gi|117928796|ref|YP_873347.1| histone family protein DNA-binding protein [Acidothermus cellulolyticus 11B] gi|117649259|gb|ABK53361.1| histone family protein DNA-binding protein [Acidothermus cellulolyticus 11B] Length = 163 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ G +K ++ V + + I + RGE + I+ F F ++ +R+ Sbjct: 1 MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + V++ V F+A + LK Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLK 85 >gi|237744441|ref|ZP_04574922.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|256027212|ref|ZP_05441046.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|260494006|ref|ZP_05814137.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33] gi|289765189|ref|ZP_06524567.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|229431670|gb|EEO41882.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|260198152|gb|EEW95668.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33] gi|289716744|gb|EFD80756.1| DNA-binding protein HU [Fusobacterium sp. D11] Length = 102 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 38/67 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V I D+ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETIEDALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQ 71 +N QT + Sbjct: 61 KNPQTGK 67 >gi|288800013|ref|ZP_06405472.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] gi|288333261|gb|EFC71740.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] Length = 97 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 47/85 (55%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + +S++ +++ + + + + + + GE++ +S F TF VK++ R+ N Sbjct: 5 EFITELSRQLEYTQEHTQGCIRCVIDAMSMAFDNGESVSVSGFGTFEVKKRLERIMVNPS 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T Q + + P+ V+ FK S+ +K+ + Sbjct: 65 TGQRMIVPPKLVLNFKPSASIKEEL 89 >gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like DNA-binding protein) [Janthinobacterium sp. Marseille] gi|151283320|gb|ABR91730.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding protein) [Janthinobacterium sp. Marseille] Length = 90 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ +S+ + R + ++ + + + ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V FK LK Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALK 86 >gi|114775527|ref|ZP_01451095.1| histone-like protein [Mariprofundus ferrooxydans PV-1] gi|114553638|gb|EAU56019.1| histone-like protein [Mariprofundus ferrooxydans PV-1] Length = 90 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 41/89 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ G+S+ + V + + I S G ++ + F TF V + +R Sbjct: 1 MNKTDLIDHVASSAGMSKTAAGDAVDAVLSGITASLSGGGSVSLVGFGTFSVTARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + FK LK + Sbjct: 61 RNPRTGEAIAVAASNAPKFKPGKALKDAV 89 >gi|302560391|ref|ZP_07312733.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000] gi|302478009|gb|EFL41102.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000] Length = 93 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88 >gi|254461410|ref|ZP_05074826.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2083] gi|206677999|gb|EDZ42486.1| DNA-binding protein HU [Rhodobacteraceae bacterium HTCC2083] Length = 95 Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K S + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGADKKASGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T +++K D +VV + LK Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALK 90 >gi|212693202|ref|ZP_03301330.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855] gi|212664307|gb|EEB24879.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855] Length = 439 Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 49/93 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLI 93 >gi|290959979|ref|YP_003491161.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22] gi|260649505|emb|CBG72620.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22] Length = 93 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|49146394|ref|YP_025502.1| putative integration host factor alpha subunit [Caedibacter taeniospiralis] gi|40458362|gb|AAR87110.1| putative integration host factor alpha subunit [Caedibacter taeniospiralis] Length = 183 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 49/95 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +++++R++L+K +S + SR+D F L N + + + I + F + Sbjct: 30 NRSMSRNELIKHLSLKTKFSREDCNHFFYELMNLLREQLLNNRIILLEGLGRFETRVSFR 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + N +T +++K +RVV+FK ++ K I D+ Sbjct: 90 KNAHNPRTMEKIKPREKRVVLFKFANEFKALISDE 124 >gi|21221395|ref|NP_627174.1| DNA-binding protein HU (hs1) [Streptomyces coelicolor A3(2)] gi|239981939|ref|ZP_04704463.1| DNA-binding protein HU (hs1) [Streptomyces albus J1074] gi|256787421|ref|ZP_05525852.1| DNA-binding protein HU (hs1) [Streptomyces lividans TK24] gi|289771320|ref|ZP_06530698.1| HSl protein [Streptomyces lividans TK24] gi|291453793|ref|ZP_06593183.1| DNA-binding protein Hu [Streptomyces albus J1074] gi|61222642|sp|P0A3H5|DBH1_STRCO RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl gi|61222644|sp|P0A3H6|DBH1_STRLI RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl gi|2104560|dbj|BAA19970.1| HSl protein [Streptomyces lividans TK24] gi|6063408|dbj|BAA85334.1| histone-like protein HSl [Streptomyces lividans] gi|6911980|emb|CAB72196.1| DNA-binding protein Hu (hs1) [Streptomyces coelicolor A3(2)] gi|289701519|gb|EFD68948.1| HSl protein [Streptomyces lividans TK24] gi|291356742|gb|EFE83644.1| DNA-binding protein Hu [Streptomyces albus J1074] Length = 93 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88 >gi|332298535|ref|YP_004440457.1| histone family protein DNA-binding protein [Treponema brennaborense DSM 12168] gi|332181638|gb|AEE17326.1| histone family protein DNA-binding protein [Treponema brennaborense DSM 12168] Length = 101 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-QKGSRV 63 +T+ DL++S+ + ++ +L ++I +S G I++ F TF + +KG + Sbjct: 4 VTKYDLIESVYQNTKCEKRVVQEVFESLLDQIKESLKSGATIELRGFGTFEPRLRKGRKK 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + P + F++ LK + + Sbjct: 64 ARNPKTGDHLSVPPHYIAAFRSGQELKNALWN 95 >gi|150008609|ref|YP_001303352.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|255014407|ref|ZP_05286533.1| DNA-binding protein HU [Bacteroides sp. 2_1_7] gi|256841374|ref|ZP_05546881.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262383459|ref|ZP_06076595.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B] gi|298376095|ref|ZP_06986051.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|301309507|ref|ZP_07215449.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149937033|gb|ABR43730.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|256737217|gb|EEU50544.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262294357|gb|EEY82289.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B] gi|298267132|gb|EFI08789.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|300832596|gb|EFK63224.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 90 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ISK G+ ++ V + + + S +GE + + F +F +K++ + Sbjct: 1 MTKADIVSEISKSTGIDKQTVLASVESFMDIVKSSLAQGENVYLRGFGSFVIKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPSFKPA 82 >gi|297156917|gb|ADI06629.1| putative histone-like DNA binding protein [Streptomyces bingchenggensis BCW-1] Length = 189 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + + + V GE + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAAEAVDAVLDAMVRAVVSGERVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|160886223|ref|ZP_02067226.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483] gi|237715013|ref|ZP_04545494.1| DNA-binding protein HU [Bacteroides sp. D1] gi|237723035|ref|ZP_04553516.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|255690595|ref|ZP_05414270.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|260173653|ref|ZP_05760065.1| DNA-binding protein HU [Bacteroides sp. D2] gi|262409038|ref|ZP_06085583.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|293372582|ref|ZP_06618964.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|294647093|ref|ZP_06724699.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294807153|ref|ZP_06765970.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|298481899|ref|ZP_07000089.1| DNA-binding protein HU [Bacteroides sp. D22] gi|299146728|ref|ZP_07039796.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|315921915|ref|ZP_07918155.1| DNA binding protein [Bacteroides sp. D2] gi|156108108|gb|EDO09853.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483] gi|229444846|gb|EEO50637.1| DNA-binding protein HU [Bacteroides sp. D1] gi|229447557|gb|EEO53348.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|260623864|gb|EEX46735.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|262353249|gb|EEZ02344.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|292632391|gb|EFF50987.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292637557|gb|EFF55969.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294445653|gb|EFG14303.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|295087866|emb|CBK69389.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens XB1A] gi|298272121|gb|EFI13692.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298517219|gb|EFI41100.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|313695790|gb|EFS32625.1| DNA binding protein [Bacteroides sp. D2] Length = 91 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ ++ V + + DS E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKQTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|118581076|ref|YP_902326.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503786|gb|ABL00269.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 91 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++ +++ + + + + ++ GE + ++ F TF + +R+G Sbjct: 1 MTKAELVARMAESGDITKAAAEKALGGFIEAVTEAIKAGEKVTLTGFGTFSAVTRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T QE++I + F LK Sbjct: 61 RNPATGQELQIAAKTSAKFSPGKELK 86 >gi|296536157|ref|ZP_06898285.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] gi|296263528|gb|EFH10025.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] Length = 90 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++ LS+ + + +F+ I S + +++ F TF ++ + G Sbjct: 1 MNKQDLVAVVAETGELSKAKAGEVLDAVFDAISQSLKAKQEVRLVGFGTFSTSRRKAGKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E++I V FKA LK Sbjct: 61 RNPRTGEEIEIAATTTVRFKAGKALK 86 >gi|221135421|ref|ZP_03561724.1| integration host factor, beta subunit [Glaciecola sp. HTCC2999] Length = 93 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + + + ++ V L + + RGE I+I F +F + + R Sbjct: 1 MTKSELIEKLMTSYDEVQTREIEVAVKELLEYMAQTLQRGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK L+ R+ Sbjct: 61 GRNPKTGELVELSGKYVPHFKPGKELRDRV 90 >gi|237730875|ref|ZP_04561356.1| integration host factor subunit beta [Citrobacter sp. 30_2] gi|283833797|ref|ZP_06353538.1| integration host factor, beta subunit [Citrobacter youngae ATCC 29220] gi|226906414|gb|EEH92332.1| integration host factor subunit beta [Citrobacter sp. 30_2] gi|291070462|gb|EFE08571.1| integration host factor, beta subunit [Citrobacter youngae ATCC 29220] Length = 94 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQPHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89 >gi|212550692|ref|YP_002309009.1| DNA-binding protein HU [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548930|dbj|BAG83598.1| DNA-binding protein HU [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 102 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++V +I++ G+ R+ + E+ S GE I + F TF K++ ++ Sbjct: 1 MTKKEIVVTIAENTGIDRESVLAVIEEFMREVTFSLSSGENIYLRFFGTFKAKKRAAKPA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN++ N + + R V FK S K +++D M+ Sbjct: 61 RNIKKNTTIFLPERYVPHFKPSDYFKNKVIDGMK 94 >gi|147678826|ref|YP_001213041.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] gi|146274923|dbj|BAF60672.1| bacterial nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 92 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 31/50 (62%) Query: 46 IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ F F ++ + R GR+++T Q + I ++V+VFK L++ ++D Sbjct: 43 VRLRGFGAFIIRDRSPRAGRDIRTGQPISIPAKKVIVFKPGKALRQAVLD 92 >gi|70724874|ref|YP_257083.1| hypothetical protein pSG2GP_12 [Sodalis glossinidius] gi|85060469|ref|YP_456169.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans'] gi|68697091|emb|CAI59372.1| hypothetical protein pSG2.12 [Sodalis glossinidius] gi|68697121|emb|CAI59586.1| hypothetical protein pSG2.12 [Sodalis glossinidius] gi|84780989|dbj|BAE75764.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 78 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 37/66 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++ ++ +++ + V+ I ++ GE++ +S F F VK++ R G Sbjct: 1 MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60 Query: 65 RNLQTN 70 RN QT Sbjct: 61 RNPQTG 66 >gi|257463408|ref|ZP_05627803.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|317060975|ref|ZP_07925460.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|313686651|gb|EFS23486.1| DNA-binding protein HU [Fusobacterium sp. D12] Length = 91 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 18/73 (24%), Positives = 42/73 (57%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ ++ R + T+F+ + + +R + I+++ V ++ R+GRN +T +EVKI R+ Sbjct: 18 SKAEAERNIETIFSLMEECIIRDGSFSITNWGKLEVVERAPRLGRNPKTGEEVKIPSRKS 77 Query: 81 VVFKASSILKKRI 93 + F+ +++ Sbjct: 78 IKFRPGKAFLEKL 90 >gi|225873629|ref|YP_002755088.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196] gi|225793084|gb|ACO33174.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196] Length = 98 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+T++ LV+ ++++ L+ K + F+ L + I ++ Sbjct: 1 MATTMTKTALVRHMAEKLELTNKQAAAFLDLLAETAIKETKKNGVFVIPGLGRLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R+GRN QT +++KI + VV F+ + Sbjct: 61 ARIGRNPQTGEQIKIKAKTVVKFRVA 86 >gi|190014828|ref|YP_001967592.1| orf_Bo196 [Agrobacterium tumefaciens] gi|71849631|gb|AAZ50579.1| orf_Bo196 [Agrobacterium tumefaciens] Length = 92 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 39/85 (45%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ + I+ E L++ + V T+F I +A G I F F +K R R Sbjct: 3 TTNEIAEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +K+ + + F+ + LK Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALK 87 >gi|296270760|ref|YP_003653392.1| histone family protein DNA-binding protein [Thermobispora bispora DSM 43833] gi|296093547|gb|ADG89499.1| histone family protein DNA-binding protein [Thermobispora bispora DSM 43833] Length = 98 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV++I+ G +K +T V + I ++ RG+ + I+ F F + K +R Sbjct: 1 MNKRELVEAIADRVG-DKKTATEAVNAVLETIQNAVARGDKVSITGFGAFEMVHKPARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T +K++ F+ + K+ + Sbjct: 60 RNPSTGAPIKVEESWAPRFRPGAEFKELV 88 >gi|303326015|ref|ZP_07356458.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] gi|302863931|gb|EFL86862.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] Length = 91 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%) Query: 5 ITRSDLVKSISKEFGLSRKDSTR-----FVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+++LV+ I + GL K V +L + D GE++ + F +F V + Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVASLREALAD----GESVTFTGFGSFKVVAR 56 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T +E+ I +V F LK I Sbjct: 57 AARKGRNPRTGKEITIPASKVAKFTPGKGLKDAI 90 >gi|331000500|ref|ZP_08324173.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] gi|329571488|gb|EGG53172.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] Length = 92 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 38/71 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ G + D + L +I + G+ + + F TF ++ +RVG Sbjct: 1 MNKTELVTAVAEVSGKPKADVKEVLEALMGQIIKTVKSGDEVALVGFGTFKSAKREARVG 60 Query: 65 RNLQTNQEVKI 75 RN T E+KI Sbjct: 61 RNPATGAELKI 71 >gi|331001163|ref|ZP_08324791.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] gi|329569251|gb|EGG51040.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] Length = 92 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 38/71 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ G + D + L +I + G+ + + F TF ++ +RVG Sbjct: 1 MNKTELVATVAEVSGKPKADVKEVLEALLGQIIKTVKSGDEVTLVGFGTFKSAKREARVG 60 Query: 65 RNLQTNQEVKI 75 RN T E+KI Sbjct: 61 RNPATGAELKI 71 >gi|34811460|pdb|1OUZ|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With A Variant H' Site (T44a) gi|34811465|pdb|1OWF|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With The Native H' Site Length = 94 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|147678837|ref|YP_001213052.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] gi|146274934|dbj|BAF60683.1| bacterial nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 89 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 41/83 (49%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +LV+ ++ E G+++ + + L + + G ++ + TF + R RNLQ Sbjct: 5 ELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKARNLQ 64 Query: 69 TNQEVKIDPRRVVVFKASSILKK 91 T + V + RR++ F+A +K Sbjct: 65 TGEPVMVPARRMLSFRAERKYRK 87 >gi|332881402|ref|ZP_08449052.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680778|gb|EGJ53725.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 107 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 16/69 (23%), Positives = 42/69 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++ GL++ D+ + + + I ++ +G+ I + F TF V ++ +R G Sbjct: 18 MNKTELINAIAENAGLNKADAKKALDATISAISEALKKGDKIALVGFGTFSVNERPARTG 77 Query: 65 RNLQTNQEV 73 N +T +++ Sbjct: 78 INPRTKEQI 86 >gi|332704460|ref|ZP_08424548.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332554609|gb|EGJ51653.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 185 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDST-RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR +++ ++ L K + + + + + + G ++ I F +FHVK R Sbjct: 1 MTRQEIIDTLQTAADLPDKTTAGKALDAILESMTEELASGGSVLIRGFGSFHVKIVAERQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GR+ +TNQ + I R V F+ L++ ++ Sbjct: 61 GRDFKTNQPIHIPAYRTVKFEPGVELRQFVI 91 >gi|288928985|ref|ZP_06422831.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] gi|288329969|gb|EFC68554.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] Length = 90 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I+ GLS+ DS + + I ++ V+G+ +++ F TF V ++ + G Sbjct: 1 MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKETLVKGDKVQLVGFGTFSVNERPAHGG 60 Query: 65 RNLQTNQEVKI 75 N T +++ I Sbjct: 61 VNPATKEKITI 71 >gi|256419934|ref|YP_003120587.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] gi|256034842|gb|ACU58386.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] Length = 89 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 38/67 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++K+ G+++ + + + + D+ +G + + F TF V ++ +R G Sbjct: 1 MNKAELIDKLAKDAGITKTQANEALDSFTKAVADTLKKGGKVTLVGFGTFSVSKRAARNG 60 Query: 65 RNLQTNQ 71 RN QT Q Sbjct: 61 RNPQTGQ 67 >gi|291461216|ref|ZP_06027675.2| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|291378149|gb|EFE85667.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] Length = 107 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +K+ L KDS R V + D+ ++GE ++ F ++ V+++ +R Sbjct: 6 MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEDALLKGEGVRFIGFGSWEVRERAAREV 65 Query: 65 RNLQT 69 N QT Sbjct: 66 TNPQT 70 >gi|288926928|ref|ZP_06420826.1| DNA-binding protein HU-beta [Prevotella buccae D17] gi|315607055|ref|ZP_07882059.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574] gi|288336287|gb|EFC74670.1| DNA-binding protein HU-beta [Prevotella buccae D17] gi|315251109|gb|EFU31094.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574] Length = 91 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ LS+ D+ + + N I D+ V G+ I++ F TF V ++ +R G Sbjct: 1 MNKSELIEKIAATAELSKADAKKALDATVNAIKDALVAGDKIQLVGFGTFAVSERPAREG 60 Query: 65 RNLQT 69 N T Sbjct: 61 INPAT 65 >gi|116695179|ref|YP_840755.1| HU family DNA-binding protein [Ralstonia eutropha H16] gi|113529678|emb|CAJ96025.1| DNA-binding protein HU family [Ralstonia eutropha H16] Length = 93 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ E LS + R + + I + +G+++ + F +F ++ +R G Sbjct: 1 MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSAGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFK 86 >gi|15672862|ref|NP_267036.1| HU-like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|12723810|gb|AAK04978.1|AE006322_6 HU-like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|12830842|gb|AAK08215.1|AF320914_2 HllB [Lactococcus lactis] gi|326406426|gb|ADZ63497.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis CV56] Length = 115 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 45/85 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ +L+ ++ LS+ ++ + + I G + IS+F TF V+++ +RV Sbjct: 3 SKQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGTPVHISNFGTFEVRKRAARVSH 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 ++ + +++ + + + VF+A LK Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87 >gi|313185101|gb|ADR50115.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 4 TITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-K 57 +++SD+V IS L +K + F E+ + I+ SF TF V K Sbjct: 8 NLSKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRK 67 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +KG RN QT + VK+ V F+ LK+R+ Sbjct: 68 RKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVW 104 >gi|212703101|ref|ZP_03311229.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC 29098] gi|212673367|gb|EEB33850.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC 29098] Length = 97 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISK----EFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+ DLV+++++ G L + D + L + G + + K Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V I RRVVVF S L + I Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKLDRDI 95 >gi|255322354|ref|ZP_05363500.1| DNA-binding protein HU 1 [Campylobacter showae RM3277] gi|255300727|gb|EET79998.1| DNA-binding protein HU 1 [Campylobacter showae RM3277] Length = 100 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D +++++ + GLS+KDS + V I + G++I F TF ++ +R R Sbjct: 3 KADFIQAVADKAGLSKKDSLKVVDAALETIEEVLKNGDSISFIGFGTFATAERAARKARV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91 T + + + + V FK LK+ Sbjct: 63 PGTTKVIDVPASKAVKFKVGKKLKE 87 >gi|227494793|ref|ZP_03925109.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436] gi|226831245|gb|EEH63628.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436] Length = 95 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 47/93 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M ++ R+ LV +I+ + +++ + + + +S GE +K++ + ++ Sbjct: 1 MDMSVNRTQLVAAIADKANITKVQADAALVAFQEVLTESLAAGETVKVTGLFSVERVERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN QT ++++I V A S LKK + Sbjct: 61 ARTGRNPQTGEQIQIPAGFGVKISAGSTLKKAV 93 >gi|332342355|gb|AEE55689.1| integration host factor, beta subunit IhfB [Escherichia coli UMNK88] Length = 94 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPVKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|303257527|ref|ZP_07343539.1| putative integration host factor subunit alpha (IHF-alpha) [Burkholderiales bacterium 1_1_47] gi|331000208|ref|ZP_08323892.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859] gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha) [Burkholderiales bacterium 1_1_47] gi|329572374|gb|EGG54027.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859] Length = 118 Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 44/95 (46%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ RS L + + +E G SR+ S FVT F I D GE +K+++ F + + ++ Sbjct: 21 TMNRSTLEEVLFEELGFSREMSRVFVTQFFQTISDVLATGEEVKLTTLGRFEICGRAYKM 80 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + + + R V F S L I ++R Sbjct: 81 FFDPEAKEWFDAPTRLDVYFHPSKKLTDFIDYNLR 115 >gi|194291893|ref|YP_002007800.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] gi|193225797|emb|CAQ71743.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] Length = 93 Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ E LS + R + + I + +G+++ + F +F ++ +R G Sbjct: 1 MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFAAGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFK 86 >gi|297621554|ref|YP_003709691.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia chondrophila WSU 86-1044] gi|297376855|gb|ADI38685.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia chondrophila WSU 86-1044] Length = 110 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 38/79 (48%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ G+ D + +++ D GE ++ F F V ++ ++ Sbjct: 9 TVTKKKLINAISQDKGIHPNDVRHVIQAFLDKMTDCLTNGERLEFRDFGVFEVVERKQKI 68 Query: 64 GRNLQTNQEVKIDPRRVVV 82 GRN + + P R V Sbjct: 69 GRNPKNASVPIVIPARPAV 87 >gi|269469081|gb|EEZ80634.1| histone family protein DNA-binding [uncultured SUP05 cluster bacterium] Length = 92 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DL+ S+S LS+ D+ V + + GE +I F F+ K + +R+G N Sbjct: 3 KTDLILSLSNNTDLSKTDAKVSVEVIIEALTKGIASGEGAEIRGFGGFYKKHRKARLGIN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91 +T++ ++ + V FK L++ Sbjct: 63 PKTSERTQVSEKFVPFFKPGKSLRE 87 >gi|126667926|ref|ZP_01738891.1| integration host factor subunit alpha [Marinobacter sp. ELB17] gi|126627586|gb|EAZ98218.1| integration host factor subunit alpha [Marinobacter sp. ELB17] Length = 85 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 S+ E GL+++++ V F+EI + + E +K+S F F ++ K R G+ L+ E Sbjct: 19 SLYDELGLNKREAKEIVGAFFDEIRGALSQNEQVKLSGFGNFDLRDKKERPGQKLKAKVE 78 Query: 73 VKI 75 + Sbjct: 79 AYV 81 >gi|186474390|ref|YP_001863361.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184198349|gb|ACC76311.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 92 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/86 (20%), Positives = 39/86 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + + + RGE +++ F +F + R G Sbjct: 1 MNKQELIDAVAATTGESKASTGETIDAIIETVTAAVTRGETVQLVGFGSFSTGARAERSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + + I + V F A K Sbjct: 61 RNPSTGETITIPAAKTVKFSAGKAFK 86 >gi|82703454|ref|YP_413020.1| histone-like DNA-binding protein [Nitrosospira multiformis ATCC 25196] gi|82411519|gb|ABB75628.1| bacterial nucleoid protein Hbs [Nitrosospira multiformis ATCC 25196] Length = 90 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+K +S+ + + I + +G+++ + F TF V + +R G Sbjct: 1 MNKAELIDAIAKSSDISKASAGNALDGALEAIKAALKKGQSVTLVGFGTFKVGTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + I+ +V F A LK + Sbjct: 61 RNPRTGAAITIESTKVPKFIAGKALKDAV 89 >gi|114562616|ref|YP_750129.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] gi|114333909|gb|ABI71291.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 91 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L ++++ + + + + + + + I GE I I F TF ++ +VG Sbjct: 1 MNKKQLAQTMASKMDIPQVQAKQQLEQILAVIHQGLAEGEKIYIPQFGTFELRFYLPKVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++ID FK S LK I Sbjct: 61 RNPQTGEAIEIDGFNQPSFKVSPALKALI 89 >gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas arsenicoxydans] gi|133738858|emb|CAL61905.1| DNA-binding protein HU-beta (NS1) (HU-1) [Herminiimonas arsenicoxydans] Length = 90 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ +S+ +TR + + + + + + + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI +V FK LK Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALK 86 >gi|237741958|ref|ZP_04572439.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256845298|ref|ZP_05550756.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_36A2] gi|294785402|ref|ZP_06750690.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] gi|229429606|gb|EEO39818.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256718857|gb|EEU32412.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_36A2] gi|294487116|gb|EFG34478.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] Length = 102 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 38/67 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V + D+ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQ 71 +N QT + Sbjct: 61 KNPQTGK 67 >gi|300716083|ref|YP_003740886.1| Integration host factor beta-subunit (IHF-beta) [Erwinia billingiae Eb661] gi|299061919|emb|CAX59035.1| Integration host factor beta-subunit (IHF-beta) [Erwinia billingiae Eb661] Length = 94 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQHSHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|291287622|ref|YP_003504438.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290884782|gb|ADD68482.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 90 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + + +L++ I++ GL + D+ + + F + +A++ + + + F TF V ++ R Sbjct: 1 MNKKELIEKIAEMAGLKKSDAEKALKA-FEDATVAALKADDKVTLVGFGTFSVSERKERK 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E+ I ++V F + K I Sbjct: 60 GRNPQTGAEMTIPAKKVPKFTPGKLFKDSI 89 >gi|154490934|ref|ZP_02030875.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC 43184] gi|154088682|gb|EDN87726.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC 43184] Length = 90 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ISK G+ ++ V + + + S +GE + + F +F +K++ + Sbjct: 1 MTKADIVSEISKSTGIDKQTVLNSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPSFKPA 82 >gi|218548428|ref|YP_002382219.1| integration host factor subunit beta [Escherichia fergusonii ATCC 35469] gi|226709795|sp|B7LN74|IHFB_ESCF3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|218355969|emb|CAQ88585.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia fergusonii ATCC 35469] gi|324113757|gb|EGC07732.1| integration host protein [Escherichia fergusonii B253] gi|325496851|gb|EGC94710.1| integration host factor subunit beta [Escherichia fergusonii ECD227] Length = 94 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKVVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|271969217|ref|YP_003343413.1| histone-like DNA-binding protein [Streptosporangium roseum DSM 43021] gi|270512392|gb|ACZ90670.1| histone-like DNA-binding protein [Streptosporangium roseum DSM 43021] Length = 99 Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ G +K +T V + + I + G+ + I+ F F + K +R Sbjct: 1 MNKKELVDAIADRVG-DKKTATEAVNAVLDAIQKAVASGDKVSITGFGAFEMVHKPARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN T E+K+ F+ S K+ + ++ G+K K Sbjct: 60 RNPSTGAEIKVAESWGPKFRPGSDFKELV--NVEGKKAAK 97 >gi|325856433|ref|ZP_08172149.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|327312503|ref|YP_004327940.1| DNA-binding protein HU [Prevotella denticola F0289] gi|325483617|gb|EGC86589.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|326945422|gb|AEA21307.1| DNA-binding protein HU [Prevotella denticola F0289] Length = 92 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + I S + + E + + F +F VK + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I FK + K ++DM+ Sbjct: 61 ARNISKNTTITIPAHNFPSFKPA----KTFIEDMK 91 >gi|313202747|ref|YP_004041404.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] gi|312442063|gb|ADQ78419.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] Length = 90 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + DS + E + + F +F +KQ+ + Sbjct: 1 MTKADIVNEIAKNTGIDKVTVLTTVEAFMETVKDSLSKNENVYLRGFGSFVIKQRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPAHNIPSFKPA 82 >gi|261414759|ref|YP_003248442.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371215|gb|ACX73960.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327271|gb|ADL26472.1| DNA-binding protein HU [Fibrobacter succinogenes subsp. succinogenes S85] Length = 116 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 IT+ ++V I+ + G ++ + V L + I + + G I++ F F KQ+ R Sbjct: 8 ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD---DMRGRKCNKDD 106 RN +T + V I + VF+ S L ++I + D+ KDD Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKINNVPFDLEEAFVPKDD 112 >gi|114566192|ref|YP_753346.1| non-specific DNA-binding protein HBsu [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337127|gb|ABI67975.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 110 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVKS++++ +++KD+ + + L I + G+ ++I F +F V+ + R Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 + T +E+ + +V FK L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >gi|115372447|ref|ZP_01459756.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310819508|ref|YP_003951866.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1] gi|115370660|gb|EAU69586.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309392580|gb|ADO70039.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1] Length = 89 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ ++ + L++K + + +F+ I + R F T+ V+ + +R Sbjct: 1 MTKAELVEVVAAQSRLTKKSAAEILDIVFSNIGKAVKRDARFSYPGFGTWSVRSRKARKI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QTN+ +K+ + + F+ + LK Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELK 86 >gi|325270174|ref|ZP_08136781.1| DNA-binding protein HU [Prevotella multiformis DSM 16608] gi|324987475|gb|EGC19451.1| DNA-binding protein HU [Prevotella multiformis DSM 16608] Length = 92 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + I S + + E + + F +F VK + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I FK + + ++DM+ Sbjct: 61 ARNISKNTTITIPAHNFPSFKPAKVF----IEDMK 91 >gi|254303147|ref|ZP_04970505.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323339|gb|EDK88589.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 102 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 38/67 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V + D+ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQ 71 +N QT + Sbjct: 61 KNPQTGK 67 >gi|307825166|ref|ZP_07655387.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] gi|307733914|gb|EFO04770.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] Length = 103 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L+ ++K++ L RK+ V + ++ + + + I+I F +F + Sbjct: 1 MTKSKLIDLLAKKWPHLERKEVELAVGCMIEQMSKALMANDRIEIRGFGSFSLHYHPPFT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T E+K+ R FK L++R+ Sbjct: 61 GRNPRTGAELKLQARYSPYFKPGRELRQRV 90 >gi|297202603|ref|ZP_06920000.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083] gi|197709867|gb|EDY53901.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083] Length = 215 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+DV +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGT---KKLPKNDVAVKKAPKGS 108 >gi|302554387|ref|ZP_07306729.1| histone protein DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302472005|gb|EFL35098.1| histone protein DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 214 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I S V GE + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDHVLDAIVRSVVSGERVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|239930957|ref|ZP_04687910.1| DNA-binding protein HU (hs1) [Streptomyces ghanaensis ATCC 14672] gi|291439334|ref|ZP_06578724.1| HSl protein [Streptomyces ghanaensis ATCC 14672] gi|291342229|gb|EFE69185.1| HSl protein [Streptomyces ghanaensis ATCC 14672] Length = 93 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + + F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTVPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKE 88 >gi|58979381|gb|AAW83355.1| DNA-binding protein HU [Campylobacter jejuni] Length = 98 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTTTDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + +K+ RV FK LK+ + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >gi|53802893|ref|YP_115338.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus str. Bath] gi|53756654|gb|AAU90945.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus str. Bath] Length = 95 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +S L+ +I ++ L++ R + L N ++ G+ + I A VK++ +R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + V+I +RV LK+R+ Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91 >gi|42524742|ref|NP_970122.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus HD100] gi|39576952|emb|CAE78181.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus HD100] Length = 90 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E +S+ + + I S +G+ +K+ F TF ++ +R G Sbjct: 1 MNKAQLIEKIATETKVSKAQAEAILDCAVENIKKSVKKGDDVKLVGFGTFTKAKRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + +KI F+A + K Sbjct: 61 RNPQTGKAIKIPAAWAPKFRAGAEFK 86 >gi|329298227|ref|ZP_08255563.1| integration host factor subunit beta [Plautia stali symbiont] Length = 94 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|313185029|gb|ADR50079.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 IT+SD+V IS L +K + F E+ + I+ SF TF V K+ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKGLDHHVAYFRPGKDLKERVW 104 >gi|330996516|ref|ZP_08320398.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT 11841] gi|329573072|gb|EGG54691.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT 11841] Length = 107 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 16/69 (23%), Positives = 42/69 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++ GL++ D+ + + + I ++ +G+ I + F TF V ++ +R G Sbjct: 18 MNKTELINAIAENAGLNKTDAKKALDATISAISEALKKGDKIALVGFGTFSVSERPARTG 77 Query: 65 RNLQTNQEV 73 N +T +++ Sbjct: 78 INPRTKEQI 86 >gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294815333|ref|ZP_06773976.1| Histone protein DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326443687|ref|ZP_08218421.1| histone-like DNA binding protein [Streptomyces clavuligerus ATCC 27064] gi|197706145|gb|EDY51957.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294327932|gb|EFG09575.1| Histone protein DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 222 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V ++ + I + V G+ + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDSVLDAIVRAVVAGDRVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|258512944|ref|YP_003189201.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256634847|dbj|BAI00822.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256637902|dbj|BAI03870.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256640956|dbj|BAI06917.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256644011|dbj|BAI09965.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256647066|dbj|BAI13013.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256650119|dbj|BAI16059.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256653110|dbj|BAI19043.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656163|dbj|BAI22089.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] Length = 92 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL++ I +S+KD+ + T+F I ++A G+ I F F V+Q R GRN Sbjct: 5 DLIERIVATTDISKKDAKTALDTVFAAIIEAAAEGDDTAIPGFGKFVVRQTSERKGRNPH 64 Query: 69 TNQEVKIDPRRVVVFKASSILK 90 T E+ I R + F + +K Sbjct: 65 TGAELVIPASRKLAFTPAKAVK 86 >gi|238763340|ref|ZP_04624304.1| Integration host factor subunit beta [Yersinia kristensenii ATCC 33638] gi|238698439|gb|EEP91192.1| Integration host factor subunit beta [Yersinia kristensenii ATCC 33638] Length = 69 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + GE I+I F +F + + RVGRN +T +V+++ + V FK L+ Sbjct: 4 MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGDKVELEGKYVPHFKPGKELRD 63 Query: 92 R 92 R Sbjct: 64 R 64 >gi|237740736|ref|ZP_04571217.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] gi|229422753|gb|EEO37800.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] Length = 102 Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +K+ L KDS R V + ++ ++GE ++ F ++ VK++ +R Sbjct: 1 MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60 Query: 65 RNLQT 69 N QT Sbjct: 61 TNPQT 65 >gi|294631600|ref|ZP_06710160.1| DNA-binding protein HU [Streptomyces sp. e14] gi|292834933|gb|EFF93282.1| DNA-binding protein HU [Streptomyces sp. e14] Length = 212 Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+D+ +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDIAVKKAPKGS 108 >gi|209552051|ref|YP_002283967.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539644|gb|ACI59575.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 92 Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 37/85 (43%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +D+ I+ E L++ V + I ++AV G + F F VK+ R R Sbjct: 3 TTNDIADKIATEHSLTKTQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKETPERDAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +K+ + + F + LK Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALK 87 >gi|239944579|ref|ZP_04696516.1| putative histone-like DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-binding protein [Streptomyces roseosporus NRRL 11379] gi|291448042|ref|ZP_06587432.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998] gi|291350989|gb|EFE77893.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+DV +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDVAVKKAPKGS 108 >gi|57242219|ref|ZP_00370158.1| hup protein [Campylobacter upsaliensis RM3195] gi|57016899|gb|EAL53681.1| hup protein [Campylobacter upsaliensis RM3195] gi|58979437|gb|AAW83383.1| DNA-binding protein HU [Campylobacter upsaliensis] Length = 98 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 41/80 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ L++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAELTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|253572936|ref|ZP_04850333.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251837463|gb|EES65557.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 92 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + +R + + I F TF + +R+ Sbjct: 3 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 61 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T + V++ + VV FK S Sbjct: 62 RNPATGEPVEVPEKEVVKFKPS 83 >gi|309808912|ref|ZP_07702790.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a] gi|308167842|gb|EFO69982.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a] Length = 47 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 50 SFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 F TF V+++ +R GRN QT E++I +V FK LK+ + Sbjct: 3 GFGTFEVRERAARKGRNPQTGAEIEIPASKVPAFKPGKALKEAV 46 >gi|288986945|ref|YP_003456908.1| integration host factor, beta subunit [Allochromatium vinosum DSM 180] gi|288898324|gb|ADC64158.1| integration host factor, beta subunit [Allochromatium vinosum DSM 180] Length = 95 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ ++ L D V L N + +S GE I++ F +F + + R Sbjct: 1 MTRSELITQMANRQEHLPEADVEVVVKALLNLLRESLANGERIEVRGFGSFSLHYRPPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V + + FK L++R+ Sbjct: 61 ARNPKTGETVFTAGKHYLHFKPGKELRERV 90 >gi|239928724|ref|ZP_04685677.1| histone-like DNA binding protein [Streptomyces ghanaensis ATCC 14672] gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672] gi|291339943|gb|EFE66899.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672] Length = 212 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+D+ +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDIAVKKAPKGS 108 >gi|89145728|gb|ABD62053.1| Hbb [Borrelia californiensis] gi|89145730|gb|ABD62054.1| Hbb [Borrelia californiensis] gi|89145732|gb|ABD62055.1| Hbb [Borrelia californiensis] Length = 108 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F E+ + ++ SF TF V K+ Sbjct: 9 VTKSDIVDQISLNIRNSNLKLEKKYIRLVIDAFFEELKSNLCSNNVVEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + V++ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVRVLDHHVAYFRPGKDLKERVW 104 >gi|189464081|ref|ZP_03012866.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM 17393] gi|198275171|ref|ZP_03207702.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM 17135] gi|255010947|ref|ZP_05283073.1| putative HU-like DNA binding protein [Bacteroides fragilis 3_1_12] gi|298482410|ref|ZP_07000596.1| DNA-binding protein HU [Bacteroides sp. D22] gi|313148752|ref|ZP_07810945.1| predicted protein [Bacteroides fragilis 3_1_12] gi|317477426|ref|ZP_07936654.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|189438415|gb|EDV07400.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM 17393] gi|198271991|gb|EDY96261.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM 17135] gi|298271389|gb|EFI12964.1| DNA-binding protein HU [Bacteroides sp. D22] gi|313137519|gb|EFR54879.1| predicted protein [Bacteroides fragilis 3_1_12] gi|316906408|gb|EFV28134.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 92 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + +R + + I F TF + +R+ Sbjct: 3 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 61 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T + V++ + VV FK S Sbjct: 62 RNPATGEPVEVPEKEVVKFKPS 83 >gi|312977270|ref|ZP_07789018.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05] gi|310895701|gb|EFQ44767.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05] Length = 59 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 38 DSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 ++ +G +++ F TF V+ + +R GRN QT E++I V FK LK Sbjct: 3 ENLAKGFKVQLIGFGTFEVRHRAARKGRNPQTGDEIEIPASEVPAFKPGKALK 55 >gi|304382113|ref|ZP_07364624.1| DNA-binding protein HU [Prevotella marshii DSM 16973] gi|304336711|gb|EFM02936.1| DNA-binding protein HU [Prevotella marshii DSM 16973] Length = 99 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 5/103 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ GL +KD + V I S + + E + + F +F VK + + Sbjct: 1 MTKADIINEIAATTGLPKKDVSTTVEAFMETIKQSLLDKRENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN+ N + I FK + K + M+G + ++D Sbjct: 61 ARNISKNTTITIAAHDFPGFKPA----KSFIQKMKGEEITEND 99 >gi|162148812|ref|YP_001603273.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] gi|209545440|ref|YP_002277669.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787389|emb|CAP56984.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] gi|209533117|gb|ACI53054.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 94 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV +++ + L + + V +F+ I + + + +++ F TF + Sbjct: 1 MEKPLNKQELVAAVADDADLPKAKAGEVVDAVFSAIEKALSKKQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + GRN +T +E+ I V FK LK+ + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAV 93 >gi|332288797|ref|YP_004419649.1| integration host factor protein subunit beta [Gallibacterium anatis UMN179] gi|330431693|gb|AEC16752.1| integration host factor protein subunit beta [Gallibacterium anatis UMN179] Length = 93 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ K I++ +S K V + + + +G+ I+I F +F ++ + R Sbjct: 1 MTKSELIEKLINRHPTMSIKHIEFSVKEIIEHLSLTLEKGDRIEIRRFGSFALRYRQPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V ++ + V FKA L++R+ Sbjct: 61 GRNPKTGTQVSLEAKSVPHFKAGKELRERV 90 >gi|288800481|ref|ZP_06405939.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str. F0039] gi|288332694|gb|EFC71174.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str. F0039] Length = 90 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ LS+ + + + I + V G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIERIAAGSDLSKAAAKKALDATTEAIKAALVAGDKVQLVGFGTFSVNERPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T Q++ I ++V FKA + L I Sbjct: 61 INPATKQKINIPAKKVAKFKAGAELNDAI 89 >gi|311114526|ref|YP_003985747.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019] gi|310946020|gb|ADP38724.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019] Length = 105 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ R GRN Sbjct: 17 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGRN 76 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + +KI V A S+LKK + + Sbjct: 77 PRTGETIKIPASYGVRISAGSLLKKAVTE 105 >gi|218261480|ref|ZP_03476291.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii DSM 18315] gi|218223998|gb|EEC96648.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii DSM 18315] Length = 90 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 42/82 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ISK G+ ++ V + + + S +GE + + F +F +K++ + Sbjct: 1 MTKADIVSEISKSTGIDKQTVLSSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPSFKPA 82 >gi|110639133|ref|YP_679342.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406] gi|110281814|gb|ABG60000.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406] Length = 90 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E L++ DS R + N + +GE++ + F +F + +R G Sbjct: 1 MNKAELIDAIAAESKLTKADSKRALDAFLNATGKALKKGESVVLIGFGSFKTATRAARNG 60 Query: 65 RNLQT 69 RN QT Sbjct: 61 RNPQT 65 >gi|254885106|ref|ZP_05257816.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA] gi|254837899|gb|EET18208.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA] Length = 90 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + +R + + I F TF + +R+ Sbjct: 1 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T + V++ + VV FK S Sbjct: 60 RNPATGEPVEVPEKEVVKFKPS 81 >gi|319779504|ref|YP_004130417.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9] gi|317109528|gb|ADU92274.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9] Length = 93 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+++ LS+ + R + I S +G+ + + F TF V + +R G Sbjct: 1 MNKTELIEKIAEKTDLSKAAAGRALDATIEAIKASMKKGQPVTLVGFGTFRVNVRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I +V F LK Sbjct: 61 RNPRTKEVIQIKKAKVPKFVPGKALK 86 >gi|238749769|ref|ZP_04611274.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380] gi|238712424|gb|EEQ04637.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380] Length = 69 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + GE I+I F +F + + RVGRN +T +V+++ + V FK L+ Sbjct: 4 MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGTKVELEGKYVPHFKPGKELRD 63 Query: 92 R 92 R Sbjct: 64 R 64 >gi|238795852|ref|ZP_04639365.1| Integration host factor subunit beta [Yersinia mollaretii ATCC 43969] gi|238720315|gb|EEQ12118.1| Integration host factor subunit beta [Yersinia mollaretii ATCC 43969] Length = 69 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + GE I+I F +F + + RVGRN +T +V+++ + V FK L+ Sbjct: 4 MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 63 Query: 92 R 92 R Sbjct: 64 R 64 >gi|60650162|ref|YP_209715.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC 9343] gi|60495242|emb|CAH05736.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC 9343] Length = 90 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + +R + + I F TF + +R+ Sbjct: 1 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQN-LREKDVSIKDFGTFKKIIQPARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T + V++ + VV FK S Sbjct: 60 RNPATGEPVEVPEKEVVKFKPS 81 >gi|282858820|ref|ZP_06267965.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282588389|gb|EFB93549.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 443 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 42/84 (50%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L +I+K++ LS D+T+FV +F+ + + +KI TF V+ R N+ T Sbjct: 9 LAIAIAKKYKLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVNT 68 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + V I+ + F + +K+ + Sbjct: 69 GERVLIEGHDKISFTPDATMKELV 92 >gi|282859928|ref|ZP_06269016.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282587331|gb|EFB92548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 91 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ LS+ DS + + I ++ +G+ I++ F TF V ++ +R G Sbjct: 1 MNKSELIDQIAASSDLSKADSKKALDATIKAIKEALAKGDKIQLVGFGTFAVNERPAREG 60 Query: 65 RNLQTNQEVKI 75 N T ++++I Sbjct: 61 INPSTKEKIQI 71 >gi|153808081|ref|ZP_01960749.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185] gi|149128984|gb|EDM20200.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185] Length = 91 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ + V + + DS E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKTTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|116511709|ref|YP_808925.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|116107363|gb|ABJ72503.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] Length = 120 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/85 (20%), Positives = 44/85 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ +L+ ++ LS+ ++ + + I G + IS+F TF V++ +R+ Sbjct: 3 SKQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISH 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 ++ + +++ + + + VF+A LK Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87 >gi|329889322|ref|ZP_08267665.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] gi|328844623|gb|EGF94187.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] Length = 91 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++ G+SR + + +++ S V+G +++ F +F + + V Sbjct: 1 MTKTELIGRMAEAAGISRDQAKLALEAFTDQVTGSLVQGRDVRLVGFGSFVAVDRKAGVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+ R F+ LK Sbjct: 61 RNPQTGEEIARPASRTARFRPGEGLK 86 >gi|89145734|gb|ABD62056.1| Hbb [Borrelia genomosp. 1] gi|89145736|gb|ABD62057.1| Hbb [Borrelia genomosp. 1] Length = 108 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V IS L +K + F ++ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQISLHIRNNNLKLEKKYIRLVIDAFFEKLKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGRDLKERVW 104 >gi|318606261|emb|CBY27759.1| integration host factor beta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 66 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + GE I+I F +F + + RVGRN +T +V+++ + V FK L+ Sbjct: 1 MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 60 Query: 92 R 92 R Sbjct: 61 R 61 >gi|224026370|ref|ZP_03644736.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM 18228] gi|224019606|gb|EEF77604.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM 18228] Length = 91 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + + + DS + E + + F +F VK++ + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLTTLEAFMDSVKDSLSKDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|304321951|ref|YP_003855594.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula bermudensis HTCC2503] gi|303300853|gb|ADM10452.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula bermudensis HTCC2503] Length = 90 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ V ++ +++ D+ R V +F+ I ++ G+ ++I F TF ++ +R G Sbjct: 1 MNKNEFVDRVAAIADITKADAGRTVDAVFDAITEALKNGDDVRIVGFGTFSSSRRPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I F A LK Sbjct: 61 RNPRTGETIQIKASNQPKFSAGKGLK 86 >gi|241764993|ref|ZP_04762990.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241365427|gb|EER60214.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 103 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV+ ++ + LS+ + + TL + I + +G +++ F TF ++ +R G Sbjct: 1 MNRAELVEILASKNDLSKAAANAVLETLIDTIQTAVKKGNPVQLVGFGTFKSAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 +N T +KI V F A + K Sbjct: 61 KNPATGAALKIPASTVPKFVAGAKFK 86 >gi|67920710|ref|ZP_00514229.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii WH 8501] gi|67856827|gb|EAM52067.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii WH 8501] Length = 93 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 17/89 (19%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ + +++K + ++ + I ++ + + + F +F + + +R G Sbjct: 1 MNKSELIDAVANKAEVTKKQAEMVISATIDTIMEAVASDDKVTLVGFGSFESRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+++ I +V F A K+ + Sbjct: 61 RNPKTNEKMNIPATKVPAFSAGKKFKEAV 89 >gi|184200009|ref|YP_001854216.1| HU_IHF family transcriptional regulator [Kocuria rhizophila DC2201] gi|183580239|dbj|BAG28710.1| putative DNA-binding protein HU [Kocuria rhizophila DC2201] Length = 94 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSR 62 + RS+LV ++++ G ++ + +LF E+ +S+V +GE I I + + + +R Sbjct: 2 AMNRSELVAEVAEKSGNTQAAVNGVLDSLF-EVFESSVSKGEKITIPGWMSVERTDRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + ++I V A S LK + Sbjct: 61 QGRNPQTGEAIQIPAGHGVKLTAGSKLKAAV 91 >gi|53712845|ref|YP_098837.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60681069|ref|YP_211213.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis NCTC 9343] gi|253563170|ref|ZP_04840627.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] gi|255008357|ref|ZP_05280483.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis 3_1_12] gi|265762946|ref|ZP_06091514.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|313146081|ref|ZP_07808274.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|52215710|dbj|BAD48303.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60492503|emb|CAH07273.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis NCTC 9343] gi|251946946|gb|EES87228.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] gi|263255554|gb|EEZ26900.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|301162554|emb|CBW22101.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis 638R] gi|313134848|gb|EFR52208.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 91 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + DS + E + + F +F VK++ + Sbjct: 1 MTKADIVNEIAKNTGVDKVTVLTTVEAFMDAVKDSLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|332670429|ref|YP_004453437.1| histone family protein DNA-binding protein [Cellulomonas fimi ATCC 484] gi|332339467|gb|AEE46050.1| histone family protein DNA-binding protein [Cellulomonas fimi ATCC 484] Length = 93 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 47/90 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV++++ + G + ++ + + + + GE++ I F ++ +R Sbjct: 2 SVNRTELVQAVAAKAGTANAEADKVLKAFQEVLVEQLAAGESVTIPGFLAVSRAERSART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N QT ++++I V A S+LK+ + Sbjct: 62 GINPQTGEKLEIPAGYRVKLTAGSVLKRAV 91 >gi|224540005|ref|ZP_03680544.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus DSM 14838] gi|224518372|gb|EEF87477.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus DSM 14838] Length = 59 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G AI + SF TF VK+K R+ N T + + P+ V+ ++ S+ LK Sbjct: 8 GNAISVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTALK 55 >gi|329936537|ref|ZP_08286273.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045] gi|329304052|gb|EGG47934.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045] Length = 93 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|294787476|ref|ZP_06752729.1| DNA-binding protein HU [Parascardovia denticolens F0305] gi|315226953|ref|ZP_07868741.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105] gi|294484832|gb|EFG32467.1| DNA-binding protein HU [Parascardovia denticolens F0305] gi|315121085|gb|EFT84217.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105] Length = 92 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 45/87 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ S V + +S GE ++++ + ++ +R GRN Sbjct: 5 KSDLVAKIAQKTSLTKAQSEAAVNAFQEVLVESLKSGEGLRLTGVLSASRVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T + + I V +A S+LKK + Sbjct: 65 PRTGETINIPAGYGVKLQAGSLLKKAV 91 >gi|254525351|ref|ZP_05137404.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14] gi|219718467|gb|EED36994.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14] Length = 71 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G+A+ + F TF V+ + +R GRN +T +KI + FKA LK + Sbjct: 20 GDAVTLVGFGTFQVRDRAARTGRNPKTGDTIKIAASKNPSFKAGKALKDAV 70 >gi|189425274|ref|YP_001952451.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421533|gb|ACD95931.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 95 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 38/72 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +S+LV +++ GL++ + + + + + + G+ + + F TF + +R GRN Sbjct: 3 KSELVAKMAEGAGLTKAQAEKALASFIAGVTGALTAGDKVTLVGFGTFSAITRKARTGRN 62 Query: 67 LQTNQEVKIDPR 78 QT + +KI + Sbjct: 63 PQTGKAIKIAAK 74 >gi|307566168|ref|ZP_07628623.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307345133|gb|EFN90515.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 91 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ GLS+ D+ + + I ++ V GE I++ F TF V ++ R G Sbjct: 1 MNKSELIDQIAANSGLSKADAKKALNATTEVIKNALVEGEKIQLVGFGTFSVNERPEREG 60 Query: 65 RNLQT 69 N T Sbjct: 61 INPST 65 >gi|294791461|ref|ZP_06756618.1| DNA-binding protein HU [Scardovia inopinata F0304] gi|294457932|gb|EFG26286.1| DNA-binding protein HU [Scardovia inopinata F0304] Length = 92 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 45/87 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ S + + +S GE ++++ + ++ +R GRN Sbjct: 5 KSDLVAKIAQKTSLTKAQSEAAINAFQEVLVESLESGEGLRLTGVLSASRVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T + + I V +A S+LKK + Sbjct: 65 PRTGEAINIPAGYGVKLQAGSLLKKAV 91 >gi|281491375|ref|YP_003353355.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147] gi|281375116|gb|ADA64634.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147] Length = 108 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 47/85 (55%), Gaps = 7/85 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ +L+ ++ LS+ ++ + +T +E G + IS+F TF V+++ +RV Sbjct: 3 SKQELIDYVADRTELSKLNAAKAITYYISE-------GTPVHISNFGTFEVRKRAARVSH 55 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 ++ + +++ + + + VF+A LK Sbjct: 56 DVHSREKILVGEQNIPVFRAGKALK 80 >gi|11514467|pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Transcription Factor 1. gi|11514468|pdb|1EXE|B Chain B, Solution Structure Of A Mutant Of Transcription Factor 1 Length = 99 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 48/87 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K+I+++ GL++ ++ + + I ++ +G+ ++++ F + +R G Sbjct: 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 N QT + ++I P V K LKK Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKK 87 >gi|29831670|ref|NP_826304.1| DNA-binding protein HU 1 [Streptomyces avermitilis MA-4680] gi|297200046|ref|ZP_06917443.1| integration host factor, beta subunit [Streptomyces sviceus ATCC 29083] gi|29608786|dbj|BAC72839.1| putative DNA-binding protein Hu 1 [Streptomyces avermitilis MA-4680] gi|197710519|gb|EDY54553.1| integration host factor, beta subunit [Streptomyces sviceus ATCC 29083] Length = 93 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|222080181|ref|YP_002540044.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221738826|gb|ACM39605.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 39/85 (45%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + GL++ + V +F I D+A I F F VK R GR Sbjct: 3 TTNEIADKIAADNGLTKVQAKGIVEAVFQAIADAAGSDAETSIPGFGKFKVKASPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +++ + + + F + LK Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALK 87 >gi|73537872|ref|YP_298239.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] gi|94313671|ref|YP_586880.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34] gi|72121209|gb|AAZ63395.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] gi|93357523|gb|ABF11611.1| Histone-like bacterial DNA-binding protein [Cupriavidus metallidurans CH34] Length = 93 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ E LS + R + + I + +G+++ + F +F ++ +R G Sbjct: 1 MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + +KI + V F A K Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFK 86 >gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodococcus opacus B4] gi|226244451|dbj|BAH54799.1| putative DNA-binding protein HU [Rhodococcus opacus B4] Length = 231 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RG+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P V F+ + K I Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110822990|gb|ABG98274.1| DNA-binding protein [Rhodococcus jostii RHA1] Length = 230 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RG+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P V F+ + K I Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >gi|330994052|ref|ZP_08317982.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1] gi|329758998|gb|EGG75512.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1] Length = 95 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 45/93 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV ++++E L++ + V +F I + + +++ F TF + Sbjct: 1 MEKPLNKQELVAAVAEEADLAKAKAGEVVDAVFGAIEKALASKQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + GRN +T + + I V FK LK+ + Sbjct: 61 AAKGRNPRTGEPLDIPASTSVRFKPGKNLKEAV 93 >gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodococcus erythropolis PR4] gi|226185014|dbj|BAH33118.1| putative DNA-binding protein HU [Rhodococcus erythropolis PR4] Length = 228 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RGE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P V F+ + K I Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229319681|gb|EEN85513.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 183 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RGE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P V F+ + K I Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >gi|221054358|ref|XP_002258318.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193808387|emb|CAQ39090.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 188 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/101 (22%), Positives = 51/101 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +S+ IT+ +++ +S E S+K + + +F+ I E I I F ++ + Sbjct: 54 ISQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRK 113 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R +N++T +++ I+ + FK S I + I +++ +K Sbjct: 114 KRCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKK 154 >gi|317047559|ref|YP_004115207.1| integration host factor subunit beta [Pantoea sp. At-9b] gi|316949176|gb|ADU68651.1| integration host factor, beta subunit [Pantoea sp. At-9b] Length = 94 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89 >gi|154247521|ref|YP_001418479.1| histone family protein DNA-binding protein [Xanthobacter autotrophicus Py2] gi|154161606|gb|ABS68822.1| histone family protein DNA-binding protein [Xanthobacter autotrophicus Py2] Length = 92 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 47/88 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ ++++E L++ + V F+ I + GE +K+ F +F V + +R GR Sbjct: 3 TKNELIAAVAEEAKLTKTAAAAAVDATFDIIAKALQEGEEVKLIGFGSFSVVTRAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VKI + F LK+ + Sbjct: 63 NPRTGKPVKIKASKAPKFTPGKGLKEAV 90 >gi|291616907|ref|YP_003519649.1| IhfB [Pantoea ananatis LMG 20103] gi|304397072|ref|ZP_07378951.1| integration host factor, beta subunit [Pantoea sp. aB] gi|308186258|ref|YP_003930389.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|291151937|gb|ADD76521.1| IhfB [Pantoea ananatis LMG 20103] gi|304355221|gb|EFM19589.1| integration host factor, beta subunit [Pantoea sp. aB] gi|308056768|gb|ADO08940.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|327393335|dbj|BAK10757.1| integration host factor beta- subunit IhfB [Pantoea ananatis AJ13355] Length = 94 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDR 89 >gi|308235225|ref|ZP_07665962.1| DNA-binding protein HB1 [Gardnerella vaginalis ATCC 14018] Length = 93 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + +KI V A S+LKK + + Sbjct: 65 PRTGETIKIPASYGVRISAGSLLKKAVTE 93 >gi|21223911|ref|NP_629690.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)] gi|256784990|ref|ZP_05523421.1| histone-like DNA binding protein [Streptomyces lividans TK24] gi|289768882|ref|ZP_06528260.1| DNA-binding protein HU 2 [Streptomyces lividans TK24] gi|61222645|sp|P0A3H7|DBH2_STRCO RecName: Full=DNA-binding protein HU 2 gi|61222646|sp|P0A3H8|DBH2_STRLI RecName: Full=DNA-binding protein HU 2 gi|3355704|emb|CAA20004.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)] gi|5926707|dbj|BAA84639.1| histone-like protein [Streptomyces lividans] gi|289699081|gb|EFD66510.1| DNA-binding protein HU 2 [Streptomyces lividans TK24] Length = 218 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + + + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDAVLDALVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+D+ +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDIAVKKAPKGS 108 >gi|288928445|ref|ZP_06422292.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] gi|288331279|gb|EFC69863.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] Length = 94 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/98 (22%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ + G+ +KD + V + I S + + + + + F +F +K + ++ Sbjct: 1 MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN+ N + I + FK + K ++ MRG + Sbjct: 61 ARNIAKNTTITIAAHDLPCFKPA----KSFVESMRGEQ 94 >gi|302542250|ref|ZP_07294592.1| putative DNA binding protein HU [Streptomyces hygroscopicus ATCC 53653] gi|302459868|gb|EFL22961.1| putative DNA binding protein HU [Streptomyces himastatinicus ATCC 53653] Length = 194 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|148244693|ref|YP_001219387.1| integration host factor, beta subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326520|dbj|BAF61663.1| integration host factor, beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 92 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 45/87 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + DL+ ++S LS+ D+ V + E+ V GE ++I F F+ K + +R G N Sbjct: 3 KPDLILNLSNSSNLSKTDAKIAVEVILEELTQGIVSGEGVEIRGFGGFYKKYRKARQGIN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T++ ++ + V FK LK+ I Sbjct: 63 PKTSERTEVSEKFVPFFKPGKFLKEII 89 >gi|1280533|gb|AAC73071.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQ 58 +T+SD+V I+ L +K + F E+ + I+ SF TF V K+ Sbjct: 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 KG RN QT VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGVYVKVLDHHVAYFRPGKDLKERVW 104 >gi|113969892|ref|YP_733685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|113884576|gb|ABI38628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] Length = 91 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I FKA++ LK+ I + Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKQAINE 91 >gi|108757022|ref|YP_629691.1| DNA-binding protein HU [Myxococcus xanthus DK 1622] gi|108460902|gb|ABF86087.1| DNA-binding protein HU [Myxococcus xanthus DK 1622] Length = 89 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ ++ + L++K + + + +F I + + F T+ V+ + +R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QTN+ +K+ + + F+ + LK Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELK 86 >gi|292490832|ref|YP_003526271.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291579427|gb|ADE13884.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 109 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/77 (22%), Positives = 38/77 (49%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L I+K+ G++ + ++ G+ +++S F F+ K +R RN + Sbjct: 24 ELAGRIAKQTGMTPDQVEEILAAFKKQVIADLTSGQEVRLSHFGKFYAKHMDAREARNPR 83 Query: 69 TNQEVKIDPRRVVVFKA 85 T + +++ PR + F+A Sbjct: 84 TGEIIQVPPRSYLRFRA 100 >gi|294673427|ref|YP_003574043.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294471958|gb|ADE81347.1| DNA-binding protein, HU family [Prevotella ruminicola 23] Length = 91 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS-AVRGEAIKISSFATFHVKQKGSRV 63 +T+++++ I++E GL++KD V I +S A E + + F TF VK++ + Sbjct: 1 MTKAEIINRIAEETGLAKKDVAISVEAFMECIRESLASEKENVYLRGFGTFVVKRRAQKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I+ FK S Sbjct: 61 ARNISKNTTLVIEAHDFPAFKPS 83 >gi|29346909|ref|NP_810412.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|253572374|ref|ZP_04849777.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298386444|ref|ZP_06996000.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|29338807|gb|AAO76606.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|251838149|gb|EES66237.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298260821|gb|EFI03689.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 91 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ + V + DS E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKTTVLTTVEAFMEAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|302558180|ref|ZP_07310522.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000] gi|302475798|gb|EFL38891.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000] Length = 213 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V GE + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAAEAVDHVLDAIVRAVVAGERVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|212693203|ref|ZP_03301331.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855] gi|212664308|gb|EEB24880.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855] Length = 59 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 G I I F TF VK+K R+ N T Q + I P+ V+ +K S LK++ Sbjct: 8 GNNIVIQGFGTFEVKKKLERISINPATQQRMLIPPKLVLTYKPSVTLKEK 57 >gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacterium sp. MCS] gi|119868006|ref|YP_937958.1| nucleoid protein Hbs [Mycobacterium sp. KMS] gi|126434491|ref|YP_001070182.1| nucleoid protein Hbs [Mycobacterium sp. JLS] gi|108769310|gb|ABG08032.1| bacterial nucleoid protein Hbs [Mycobacterium sp. MCS] gi|119694095|gb|ABL91168.1| bacterial nucleoid protein Hbs [Mycobacterium sp. KMS] gi|126234291|gb|ABN97691.1| bacterial nucleoid protein Hbs [Mycobacterium sp. JLS] Length = 225 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDALTTKMGTDRRQATEAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ P V F+ + K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >gi|114047123|ref|YP_737673.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|113888565|gb|ABI42616.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] Length = 91 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRFHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I FKA++ LKK I + Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKKAINE 91 >gi|315499784|ref|YP_004088587.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315417796|gb|ADU14436.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 92 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 40/68 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+ + GL+++ + + V + + D+ +GE +++ F TF ++ + R Sbjct: 3 TKAELVAAIADQAGLTKEQAKKAVDAFTDSVVDALKKGEEVRLVGFGTFLAVKREAGTAR 62 Query: 66 NLQTNQEV 73 N +T + V Sbjct: 63 NPRTGETV 70 >gi|153878657|ref|ZP_02004647.1| Integration host factor beta-subunit [Beggiatoa sp. PS] gi|152064879|gb|EDN65353.1| Integration host factor beta-subunit [Beggiatoa sp. PS] Length = 73 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 33/65 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + T+ ++ S GE I+I F +F + + R GRN +T + V + + V FK Sbjct: 1 MKTILEQMAQSLENGERIEIRGFGSFSLHYRPPRKGRNPKTGEPVDLPEKFVPHFKPGKE 60 Query: 89 LKKRI 93 L+ R+ Sbjct: 61 LRDRV 65 >gi|260912465|ref|ZP_05919002.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] gi|260633437|gb|EEX51590.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] Length = 93 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ + G+ +KD + V + I S + + + + + F +F +K + ++ Sbjct: 1 MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N + I + FK + K ++ MRG Sbjct: 61 ARNIAKNTTITIAAHDLPCFKPA----KSFVESMRGE 93 >gi|182435719|ref|YP_001823438.1| putative histone-like DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776344|ref|ZP_08235609.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] gi|178464235|dbj|BAG18755.1| putative histone-like DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656677|gb|EGE41523.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] Length = 224 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT---SPSGS 113 RN QT + V++ V F+A K + +K K+DV +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGS---KKLPKNDVAVKKAPKGS 108 >gi|23335497|ref|ZP_00120732.1| COG0776: Bacterial nucleoid DNA-binding protein [Bifidobacterium longum DJO10A] gi|23466342|ref|NP_696945.1| DNA-binding protein HU [Bifidobacterium longum NCC2705] gi|189440838|ref|YP_001955919.1| nucleoid DNA-binding protein [Bifidobacterium longum DJO10A] gi|213691575|ref|YP_002322161.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546710|ref|ZP_03976759.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620686|ref|ZP_04663717.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454624|ref|YP_003661767.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|312132302|ref|YP_003999641.1| hima [Bifidobacterium longum subsp. longum BBMN68] gi|317481730|ref|ZP_07940762.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689691|ref|YP_004209425.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322691653|ref|YP_004221223.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|24212656|sp|P17615|DBH1_BIFLO RecName: Full=DNA-binding protein HB1 gi|23327099|gb|AAN25581.1| DNA-binding protein Hu [Bifidobacterium longum NCC2705] gi|189429273|gb|ACD99421.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum DJO10A] gi|213523036|gb|ACJ51783.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212672|gb|EEI80553.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516262|gb|EEQ56129.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516247|emb|CBK69863.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum subsp. longum F8] gi|296184055|gb|ADH00937.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|311773444|gb|ADQ02932.1| HimA [Bifidobacterium longum subsp. longum BBMN68] gi|316916844|gb|EFV38234.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456509|dbj|BAJ67131.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320457663|dbj|BAJ68284.1| DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461027|dbj|BAJ71647.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 93 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T +++ I V A S+LKK + + Sbjct: 65 PRTGEQIDIPASYGVRISAGSLLKKAVTE 93 >gi|296115319|ref|ZP_06833958.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295978142|gb|EFG84881.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 91 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ D+ + + L + + +A G+ I + +F F VK+ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTDTRKVLDALIDTMTAAAKTGDEITLPNFGKFKVKEVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGATIQIAASRKLTFTPAKALKDSLND 91 >gi|145224804|ref|YP_001135482.1| histone family protein DNA-binding protein [Mycobacterium gilvum PYR-GCK] gi|315445134|ref|YP_004078013.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1] gi|145217290|gb|ABP46694.1| bacterial nucleoid protein Hbs [Mycobacterium gilvum PYR-GCK] gi|315263437|gb|ADU00179.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1] Length = 217 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ P V F+ + K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >gi|195953183|ref|YP_002121473.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932795|gb|ACG57495.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 99 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SD++K I K S+KD + + I + ++ E I++ F +K+K S++ Sbjct: 1 MKKSDIIKQIDKYTNYSQKDIKLVIEYFLDAIMEGLIQDERIELRRLGIFLLKKKPSKMV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + R + FK +KK + Sbjct: 61 INPRTGVQTLVSERYLPYFKMGKYIKKEL 89 >gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043] gi|315589541|gb|ADU48838.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043] Length = 228 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ G SR+ ++ + + + + +G + I+ F TF + +R G Sbjct: 1 MNKAELIGALEARLG-SRRVASDALEAVLDIVIREVAKGGKVGITGFGTFERANRAARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T VKI R+ F+A + K Sbjct: 60 RNPKTGDTVKIKKTRIPKFRAGTNFK 85 >gi|22299810|ref|NP_683057.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1] gi|22295994|dbj|BAC09819.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1] Length = 111 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 38/72 (52%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +++K ++ EI ++ +GE + + F F +++ +R GRN +T ++++I Sbjct: 23 VTKKQVEAIISATVEEIMEAVAKGEKVTLVGFGAFERRERKAREGRNPKTKEKMQIPATN 82 Query: 80 VVVFKASSILKK 91 V F A + K+ Sbjct: 83 VPAFSAGKLFKE 94 >gi|327312706|ref|YP_004328143.1| DNA-binding protein HU-beta [Prevotella denticola F0289] gi|326945003|gb|AEA20888.1| DNA-binding protein HU-beta [Prevotella denticola F0289] Length = 91 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I + V G+ +++ F TF V ++ + G Sbjct: 1 MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60 Query: 65 RNLQTNQEVKI 75 N T Q+++I Sbjct: 61 INPATKQKIQI 71 >gi|258542723|ref|YP_003188156.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|329114677|ref|ZP_08243436.1| DNA-binding protein [Acetobacter pomorum DM001] gi|256633801|dbj|BAH99776.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256636860|dbj|BAI02829.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256639913|dbj|BAI05875.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256642969|dbj|BAI08924.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256646024|dbj|BAI11972.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256649077|dbj|BAI15018.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256652064|dbj|BAI17998.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655121|dbj|BAI21048.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] gi|326696157|gb|EGE47839.1| DNA-binding protein [Acetobacter pomorum DM001] Length = 95 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 43/93 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV ++++ L + + V +F I + + +++ F TF + Sbjct: 1 MEKPLNKQELVSAVAEAVDLPKAKAGEVVDAVFGAIEKALSTKQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + GRN +T +E+ I V FK LK + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKALKDAV 93 >gi|116326536|ref|YP_796459.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|134093293|ref|YP_001098369.1| hypothetical protein pDB0R0p15 [Lactococcus lactis subsp. lactis bv. diacetylactis] gi|116108903|gb|ABJ74028.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|133712501|gb|ABO37108.1| unknown [Lactococcus lactis subsp. lactis bv. diacetylactis] Length = 103 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%) Query: 5 ITRSDLVKSISKEFG-------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 + + +L K+IS++ G L+ +S + V + I + V+ I++ F TF K Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + SR G N Q + ++I + V FKA LK+ + Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >gi|19704153|ref|NP_603715.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|254303834|ref|ZP_04971192.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|296328641|ref|ZP_06871158.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714367|gb|AAL95014.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|148324026|gb|EDK89276.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|296154240|gb|EFG95041.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 91 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 +R ++ + V +F+ I + GE + I ++ + ++ R+GRN +T +EVKI R+ Sbjct: 18 TRTEAEKKVDIIFDSIEKILLDGENLSIINWGKLEIVERAPRLGRNPKTGEEVKIGKRKS 77 Query: 81 VVFKAS 86 V F+ Sbjct: 78 VKFRPG 83 >gi|150010105|ref|YP_001304848.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|255012635|ref|ZP_05284761.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|301308155|ref|ZP_07214109.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149938529|gb|ABR45226.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|300833625|gb|EFK64241.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 95 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + R +LVK+++ + +++ ++ RFV + E A+ + ++ + F T ++ R+ Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQA-WEETTTEALESDGSLMLLGFGTLSAWEQTERI 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + I R+ V FK +L K++ Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQL 89 >gi|283783178|ref|YP_003373932.1| DNA-binding protein HU [Gardnerella vaginalis 409-05] gi|283441069|gb|ADB13535.1| DNA-binding protein HU [Gardnerella vaginalis 409-05] Length = 93 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 44/87 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T + +KI V A S+LKK + Sbjct: 65 PRTGETIKIPASYGVRISAGSLLKKAV 91 >gi|284029180|ref|YP_003379111.1| histone family protein DNA-binding protein [Kribbella flavida DSM 17836] gi|283808473|gb|ADB30312.1| histone family protein DNA-binding protein [Kribbella flavida DSM 17836] Length = 97 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 44/94 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV ++ + G+ R + + + L + + ++ +G+ + ++ + + R G Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + + I V S LK D+R Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAARGDLR 94 >gi|120403129|ref|YP_952958.1| histone family protein DNA-binding protein [Mycobacterium vanbaalenii PYR-1] gi|119955947|gb|ABM12952.1| bacterial nucleoid protein Hbs [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ P V F+ + K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >gi|148260981|ref|YP_001235108.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|326404379|ref|YP_004284461.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] gi|146402662|gb|ABQ31189.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|325051241|dbj|BAJ81579.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] Length = 89 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + R T L I + + SF TF V++ +R G N +T +E+K+ + V FK Sbjct: 21 ANRAATDLMEAIVKELKKNGKFTLPSFGTFTVRKTKARKGVNPRTGEEIKVKAGKTVRFK 80 Query: 85 ASSILKKRI 93 AS LKK + Sbjct: 81 ASPSLKKMV 89 >gi|194246520|ref|YP_002004159.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma mali] gi|193806877|emb|CAP18306.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma mali] Length = 96 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 45/82 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +K +S + + K+ + + + + I + ++ E I I+ F TF VK + R G Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 ++ +T + +KI +++ FK S Sbjct: 61 KHPKTREIIKIPAKKIPSFKMS 82 >gi|71907345|ref|YP_284932.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71846966|gb|AAZ46462.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 90 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ SI+ + +S+ + R + I + G+++ + F TF+V ++ +R G Sbjct: 1 MNKTDLIDSIAAQADISKAAAGRALDAAVESIKGALKAGDSVSLIGFGTFYVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + ++I + F+ LK Sbjct: 61 RNPRTGKTLEIKAAKQPKFRPGKGLK 86 >gi|39938529|ref|NP_950295.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39938880|ref|NP_950646.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721638|dbj|BAD04128.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721989|dbj|BAD04479.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K I++ S + F + N + + + E + +SS F +K + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKSRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +++KI + VV FK S +K Sbjct: 61 GRNPKTRKKLKIPAKTVVTFKLSKTIK 87 >gi|330992041|ref|ZP_08315990.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] gi|329761062|gb|EGG77557.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] Length = 91 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ D+ + + L + +A G+ I + +F F VK+ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVKEVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGAAIQIAASRKLAFTPAKALKDSLND 91 >gi|315644375|ref|ZP_07897515.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] gi|315280252|gb|EFU43544.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] Length = 61 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + ++DL+ +IS + GL++KD + EI D+ G+ +++ F TF Sbjct: 1 MNKTDLINNISGKSGLTKKDVENVLNGFLGEITDALANGDKVQLIGFGTF 50 >gi|297559169|ref|YP_003678143.1| histone family protein DNA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843617|gb|ADH65637.1| histone family protein DNA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 93 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +IS G +K +T V + + I + G+ + I+ F F ++ +R Sbjct: 1 MNKRDLIDAISDRLG-DKKTATEAVNAVLDTIQATVASGDKVAITGFGVFEKSERAARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T + + V F+A + K + D Sbjct: 60 RNPATGATINVPASFVPKFRAGADFKALVNGD 91 >gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 130 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +++ + G SRK + V + + I + V GE + ++ F +F + +R Sbjct: 1 MNKAQLINAVADKMG-SRKQAADAVEHVLDTIVRTVVAGERVSVTGFGSFEKVSRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ + F+A K Sbjct: 60 RNPQTGERVRVKKSSMPRFRAGQGFK 85 >gi|332973006|gb|EGK10945.1| integration host factor beta subunit [Psychrobacter sp. 1501(2011)] Length = 99 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Query: 1 MSKTITRSDLVKSISKEFGLSRK----DSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 M++ I +SDL++ +S + D+ R + L +E + I++ F TF + Sbjct: 1 MTEVINKSDLIQDVSARCDYISETEVDDAVREIIELLSE---KLIENNRIEVRGFGTFCL 57 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + +R GRN +T + V + + + FK L++ + D Sbjct: 58 HHREARQGRNPKTGEMVMVPQKSIPHFKPGKALREGVND 96 >gi|188534268|ref|YP_001908065.1| integration host factor subunit beta [Erwinia tasmaniensis Et1/99] gi|226709794|sp|B2VC76|IHFB_ERWT9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|188029310|emb|CAO97187.1| Integration host factor beta-subunit (IHF-beta) [Erwinia tasmaniensis Et1/99] Length = 95 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobacterium abscessus ATCC 19977] gi|169242340|emb|CAM63368.1| DNA-binding protein HU homolog (Histone-like) [Mycobacterium abscessus] Length = 207 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVEHVVDTIVRTVHKGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ P V F+ + K Sbjct: 61 RNPRTGETVKVKPTSVPTFRPGAQFK 86 >gi|71907279|ref|YP_284866.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71846900|gb|AAZ46396.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 73 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 36/66 (54%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 V L ++I + V G +++ F +F + + R+GRN +T +V + + V FKA Sbjct: 5 VKELLDQIGQTLVAGNRVEVRGFGSFGLTYRPPRLGRNPKTGDKVAVPGKYVPHFKAGKE 64 Query: 89 LKKRIM 94 L++ ++ Sbjct: 65 LRELVL 70 >gi|288926971|ref|ZP_06420867.1| DNA-binding protein HU [Prevotella buccae D17] gi|288336254|gb|EFC74639.1| DNA-binding protein HU [Prevotella buccae D17] Length = 493 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 43/83 (51%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 ++L +++S + +S+ D+ FV +F + D + + +KI SF TF + R ++ Sbjct: 12 TELARTLSSKHNMSQADAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGSVKDRESVDV 71 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 T + + I+ R + F + L+ Sbjct: 72 NTGERIVIEGRNKINFTPDNALR 94 >gi|261878950|ref|ZP_06005377.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] gi|270334461|gb|EFA45247.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] Length = 91 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVK I+ GLS D+ + + I ++ V G+ +++ F TF K++ +R G Sbjct: 1 MNKTELVKKIADATGLSAADAKKALDATTCAIKEALVDGDKVQLIGFGTFSTKERPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N + ++++I + VV F S ++ + Sbjct: 61 VNPSSGEKIQIAAKTVVKFNPGSEFEEAV 89 >gi|332091766|gb|EGI96845.1| integration host factor subunit beta [Shigella dysenteriae 155-74] gi|332093460|gb|EGI98518.1| integration host factor subunit beta [Shigella boydii 3594-74] gi|332758997|gb|EGJ89307.1| integration host factor subunit beta [Shigella flexneri 4343-70] gi|332767859|gb|EGJ98049.1| ihfB [Shigella flexneri 2930-71] Length = 66 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + +GE I+I F +F + + R GRN +T +V+++ + V FK L+ Sbjct: 1 MLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRD 60 Query: 92 R 92 R Sbjct: 61 R 61 >gi|317484455|ref|ZP_07943367.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316924279|gb|EFV45453.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 110 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 42/86 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ +++ + R + + + + + ++ F TF + + R G Sbjct: 20 MTKADLVAQIAARANMTKAAAERSLNAMLESVQEMLAEDGKLTLTGFGTFVAETRQERQG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + I +VV F+ +LK Sbjct: 80 RNPRTGDVITIAASKVVRFRPGKMLK 105 >gi|229817265|ref|ZP_04447547.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM 20098] gi|229785054|gb|EEP21168.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM 20098] Length = 94 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + ++I V A S+LKK + + Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAVTE 93 >gi|297191835|ref|ZP_06909233.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC 25486] gi|197722028|gb|EDY65936.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 216 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|24373428|ref|NP_717471.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] gi|24347706|gb|AAN54915.1|AE015629_9 DNA-binding protein, HU family [Shewanella oneidensis MR-1] Length = 91 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPLFGTFELRYHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I FKA++ LK+ I Sbjct: 61 RNPQTGEAIEIAGFNQPSFKAATALKQAI 89 >gi|39938999|ref|NP_950765.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722108|dbj|BAD04598.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 + + +L+K I++ S + F + N + + + E + +SS F +K + + + Sbjct: 1 MNKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKPRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +++KI + VV FK S +K Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKTIK 87 >gi|19918954|dbj|BAB88690.1| histone-like HU protein HBl [Bifidobacterium longum biovar Longum] Length = 93 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRPARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T +++ I V A S+LKK + + Sbjct: 65 PRTGEQIDIPASYGVRISAGSLLKKAVTE 93 >gi|222102443|ref|YP_002539482.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221739044|gb|ACM39777.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 39/85 (45%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ GL++ + V ++F I D+A I F F VK R GR Sbjct: 3 TTNEIADKIAANNGLTKVQAKGIVESVFKAIADAAGSDAETSIPGFGKFKVKTSPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +++ + + + F + LK Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALK 87 >gi|328885294|emb|CCA58533.1| Integration host factor beta subunit [Streptomyces venezuelae ATCC 10712] Length = 234 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAAEAVDHVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|292487831|ref|YP_003530706.1| integration host factor subunit beta [Erwinia amylovora CFBP1430] gi|292899058|ref|YP_003538427.1| integration host factor subunit beta [Erwinia amylovora ATCC 49946] gi|291198906|emb|CBJ46016.1| integration host factor beta-subunit [Erwinia amylovora ATCC 49946] gi|291553253|emb|CBA20298.1| Integration host factor beta-subunit (IHF-beta) [Erwinia amylovora CFBP1430] gi|312171952|emb|CBX80209.1| Integration host factor beta-subunit (IHF-beta) [Erwinia amylovora ATCC BAA-2158] Length = 95 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|254383272|ref|ZP_04998625.1| histone protein DNA-binding protein [Streptomyces sp. Mg1] gi|194342170|gb|EDX23136.1| histone protein DNA-binding protein [Streptomyces sp. Mg1] Length = 224 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|168699941|ref|ZP_02732218.1| probable DNA-binding protein HU [Gemmata obscuriglobus UQM 2246] Length = 167 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 5 ITRSDLVKSIS---------KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 +T+ ++VK+I + L++ + V F I ++ V I++ +F F Sbjct: 1 MTKKEIVKTICDRANKKNLIPKHNLTQLATKEIVQWTFEAIIETLVSEGRIELRNFGVFE 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 VKQ+ R RN +T V+++ + VV F+ +++++ Sbjct: 61 VKQRKPRKARNPRTGAAVEVEAKNVVTFQPGKTMEEQV 98 >gi|320333649|ref|YP_004170360.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] gi|319754938|gb|ADV66695.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] Length = 122 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I ++ ++ ++ + L++K + V T+ + + ++ G+++ + TF V + +R G Sbjct: 34 IAKTQIIDLVADQTSLNKKQAAEAVATMLDVVVEALRDGKSVGLPGLGTFSVAKTAARTG 93 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T++ + I + V FK +S LK + Sbjct: 94 VKPGTSERITIPAGKKVRFKVASTLKTNL 122 >gi|198283418|ref|YP_002219739.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667634|ref|YP_002426011.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247939|gb|ACH83532.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519847|gb|ACK80433.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 91 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V ++++ +S+ D+ + + + I F TF V +K +R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN T QE+ I ++ + FKA Sbjct: 61 RNPATGQEIDIPAKKSIKFKAG 82 >gi|117920062|ref|YP_869254.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] gi|117612394|gb|ABK47848.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] Length = 91 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTRPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I FKA++ LK+ I Sbjct: 61 RNPQTGETMEIAGFNQPSFKAATALKQAI 89 >gi|323343529|ref|ZP_08083756.1| DNA-binding protein HU [Prevotella oralis ATCC 33269] gi|323095348|gb|EFZ37922.1| DNA-binding protein HU [Prevotella oralis ATCC 33269] Length = 114 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++K + +++L++ I+ GLS+ + + + I + V G+ +++ F TF V ++ Sbjct: 20 INKIMNKTELIEKIAAGSGLSKAAAKKALDATTEAIKAALVAGDKVQLIGFGTFSVTERP 79 Query: 61 SRVGRN-LQTNQEVKIDPRRVVVFKASSIL 89 +RVG N + Q++ I ++V FK + L Sbjct: 80 ARVGVNPAKKGQKINIPAKKVAKFKVGAEL 109 >gi|3228564|gb|AAD03319.1| histone-like protein HLm [Listeria monocytogenes] Length = 83 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 8/88 (9%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV S+++ LS+K T+ L++++ + + + F F V+++ +R GR Sbjct: 3 NKTDLVNSVAELADLSKK--TQRKQQLYSKLF------KLLHLLGFGNFEVRERAARKGR 54 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +E+ I +V FK LK+ + Sbjct: 55 NPATKEEIDIPASKVPAFKPGKALKEAV 82 >gi|88596497|ref|ZP_01099734.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25] gi|88191338|gb|EAQ95310.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25] Length = 61 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 35/61 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 R 65 R Sbjct: 61 R 61 >gi|257451617|ref|ZP_05616916.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|257466933|ref|ZP_05631244.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|315918076|ref|ZP_07914316.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|317058182|ref|ZP_07922667.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313683858|gb|EFS20693.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313691951|gb|EFS28786.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] Length = 91 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 41/73 (56%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ ++ R + T+F+ + + + + I+++ V ++ R+GRN +T +EVKI R+ Sbjct: 18 SKAEAERNIETIFSLMEECIINDGSFSITNWGKLEVVERAPRLGRNPKTGEEVKIPSRKS 77 Query: 81 VVFKASSILKKRI 93 + F+ +++ Sbjct: 78 IKFRPGKAFLEKL 90 >gi|325860232|ref|ZP_08173357.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A] gi|325482319|gb|EGC85327.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A] Length = 91 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I + V G+ +++ F TF V ++ + G Sbjct: 1 MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVVGDKVQLVGFGTFAVNERPAHEG 60 Query: 65 RNLQTNQEVKI 75 N T Q+++I Sbjct: 61 INPATKQKIQI 71 >gi|293363573|ref|ZP_06610329.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2] gi|292552922|gb|EFF41676.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2] Length = 92 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 44/87 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V I+ + G + K+ +F + + + E +++S+ TF + K R Sbjct: 1 MTKKEFVMKIANKTGYTVKEVNKFFDAFVFYLKEELIGEEKVQLSTLGTFSTQIKRKRET 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 +N T + + I RRVV F+ S L++ Sbjct: 61 KNAFTGENISIPERRVVRFRPSKYLRE 87 >gi|119025570|ref|YP_909415.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703] gi|154487028|ref|ZP_02028435.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis L2-32] gi|171743350|ref|ZP_02919157.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC 27678] gi|212716910|ref|ZP_03325038.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum DSM 16992] gi|225350744|ref|ZP_03741767.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium pseudocatenulatum DSM 20438] gi|283455679|ref|YP_003360243.1| DNA-binding protein HU [Bifidobacterium dentium Bd1] gi|306823294|ref|ZP_07456670.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679] gi|309801902|ref|ZP_07696017.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022] gi|118765154|dbj|BAF39333.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703] gi|154084891|gb|EDN83936.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis L2-32] gi|171278964|gb|EDT46625.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC 27678] gi|212660195|gb|EEB20770.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum DSM 16992] gi|225158200|gb|EEG71442.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium pseudocatenulatum DSM 20438] gi|283102313|gb|ADB09419.1| DNA-binding protein HU [Bifidobacterium dentium Bd1] gi|304553926|gb|EFM41837.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679] gi|308221458|gb|EFO77755.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022] Length = 93 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 45/87 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T + ++I V A S+LKK + Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAV 91 >gi|167753149|ref|ZP_02425276.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM 17216] gi|167659463|gb|EDS03593.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM 17216] Length = 90 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 37/82 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G + V I S + + + F +F VK++ +V Sbjct: 1 MTKADIVSEIAKSTGAEKVQVQAIVEAFMESIKGSLAQNNNVYLRGFGSFIVKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTITIPAHNIPAFKPA 82 >gi|156088029|ref|XP_001611421.1| hypothetical protein [Babesia bovis T2Bo] gi|154798675|gb|EDO07853.1| conserved hypothetical protein [Babesia bovis] Length = 175 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 36/78 (46%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+ L+ I++ +++KD V I + + I+ F FH +G R Sbjct: 77 ETVTKKQLISEIAQTTNMTQKDVGIVVDEFLKSIVKHLGENKEVSIAKFGLFHNSLRGPR 136 Query: 63 VGRNLQTNQEVKIDPRRV 80 + +NLQT + P V Sbjct: 137 LMKNLQTGEMYTAKPVYV 154 >gi|329936762|ref|ZP_08286469.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus M045] gi|329303992|gb|EGG47875.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus M045] Length = 222 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|150006582|ref|YP_001301326.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|212691238|ref|ZP_03299366.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855] gi|237712330|ref|ZP_04542811.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|237726466|ref|ZP_04556947.1| DNA-binding protein HU [Bacteroides sp. D4] gi|254881516|ref|ZP_05254226.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|265752041|ref|ZP_06087834.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] gi|294775457|ref|ZP_06740970.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|319642901|ref|ZP_07997537.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] gi|149935006|gb|ABR41704.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|212666470|gb|EEB27042.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855] gi|229434992|gb|EEO45069.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4] gi|229453651|gb|EEO59372.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|254834309|gb|EET14618.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|263236833|gb|EEZ22303.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] gi|294450698|gb|EFG19185.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|317385449|gb|EFV66392.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] Length = 91 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + + + DS + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTLEAFMDTVKDSLSKEENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|256838928|ref|ZP_05544438.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|256739847|gb|EEU53171.1| integration host factor, alpha subunit [Parabacteroides sp. D13] Length = 95 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + R +LVK+++ + +++ ++ RFV + E A+ + ++ + F T ++ R+ Sbjct: 1 MNRRELVKTLADKLSVTQVEAMRFVQA-WEETTTEALESDGSLMLLGFGTLSAWKQTERI 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + I R+ V FK +L KR+ Sbjct: 60 GRNPRNGVAYIIRARKSVKFKPGKLLLKRL 89 >gi|326381558|ref|ZP_08203252.1| histone family protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326199805|gb|EGD56985.1| histone family protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 239 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K RK +T FV + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIEELTKRLDADRKTATNFVEQVIDTIVRAVNKGESVTITGFGVFEKRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ + F+ + K Sbjct: 61 RNPRTGETVKVKATSIPAFRPGAQFK 86 >gi|291457432|ref|ZP_06596822.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213] gi|291381267|gb|EFE88785.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213] Length = 93 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + + I V A S+LKK + + Sbjct: 65 PRTGETINIPASYGVRISAGSLLKKAVTE 93 >gi|310767180|gb|ADP12130.1| integration host factor subunit beta [Erwinia sp. Ejp617] Length = 95 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I++ F +F + + R Sbjct: 1 MTKSELIERLACQQPHIQAKVLEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|91205964|ref|YP_538319.1| DNA-binding protein HU [Rickettsia bellii RML369-C] gi|157826672|ref|YP_001495736.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389] gi|91069508|gb|ABE05230.1| DNA-binding protein HU [Rickettsia bellii RML369-C] gi|157801976|gb|ABV78699.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389] Length = 108 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++ D+ + + + I + ++ I+ F +F ++ + SR GRN +T ++ I + Sbjct: 32 FTKADAEKALNWVLESIISATKHQHSVNITGFGSFGIQSRKSREGRNPKTGAKMTIPAYK 91 Query: 80 VVVFKASSILKK 91 VFKA S LK+ Sbjct: 92 QPVFKAGSKLKE 103 >gi|261337946|ref|ZP_05965830.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093] gi|270277441|gb|EFA23295.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093] Length = 93 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + + +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVPRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + ++I V A S+LKK + + Sbjct: 65 PRTGETIEIPATYGVRISAGSLLKKAVTE 93 >gi|255327422|ref|ZP_05368496.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC 25296] gi|255295702|gb|EET75045.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC 25296] Length = 94 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 40/87 (45%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 R++LV ++++ G S+ + +F S +GE I I + + +R GRN Sbjct: 5 RTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 QT + ++I V A S LK + Sbjct: 65 PQTGETIQIPAGHGVKLTAGSKLKAAV 91 >gi|218259892|ref|ZP_03475424.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii DSM 18315] gi|218224857|gb|EEC97507.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii DSM 18315] Length = 96 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 42/85 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++++++ GL ++ + + + + + ++ E I + F T + + R+ Sbjct: 1 MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLVGFGTLIPRPQTERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T V I R V FK L Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYL 85 >gi|19704359|ref|NP_603921.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327419|ref|ZP_06869966.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714609|gb|AAL95220.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155432|gb|EFG96202.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 102 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 38/67 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V + ++ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETVENALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQ 71 +N QT + Sbjct: 61 KNPQTGK 67 >gi|167836518|ref|ZP_02463401.1| histone family protein DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 64 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + I + R EA+++ F F Q+ +R GRN T +E+ I V F A LK Sbjct: 1 MDAITGAVSRDEAVQLVGFGAFSRGQRSARTGRNPTTGEEIAIAAANTVRFAAGKALKDA 60 Query: 93 I 93 + Sbjct: 61 V 61 >gi|124007134|sp|Q1RHD4|DBH_RICBR RecName: Full=DNA-binding protein HU Length = 101 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 38/72 (52%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++ D+ + + + I + ++ I+ F +F ++ + SR GRN +T ++ I + Sbjct: 25 FTKADAEKALNWVLESIISATKHQHSVNITGFGSFGIQSRKSREGRNPKTGAKMTIPAYK 84 Query: 80 VVVFKASSILKK 91 VFKA S LK+ Sbjct: 85 QPVFKAGSKLKE 96 >gi|302537148|ref|ZP_07289490.1| predicted protein [Streptomyces sp. C] gi|302446043|gb|EFL17859.1| predicted protein [Streptomyces sp. C] Length = 248 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + + + V G+ + ++ F +F + +R Sbjct: 19 VNKAQLVEAIADKLG-GRQQAADAVDAVLDAMVRAVVAGDRVSVTGFGSFEKVDRPARYA 77 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 78 RNPQTGERVRVKKTSVPRFRAGQGFK 103 >gi|294155859|ref|YP_003560243.1| DNA-binding protein HU [Mycoplasma crocodyli MP145] gi|291600263|gb|ADE19759.1| DNA-binding protein HU [Mycoplasma crocodyli MP145] Length = 93 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + + I+ G + K+ +F T + + + E +++SS TF + K R Sbjct: 1 MTKKEFIMKIANRTGYTVKEVNKFFDTFVFFLKEELIGEEKVQLSSLGTFSTQIKHKRHT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N T +++ I +RVV F S L++ I Sbjct: 61 KNAFTGEDLFIPEKRVVKFTPSKYLRELI 89 >gi|313159797|gb|EFR59153.1| DNA-binding protein HU [Alistipes sp. HGB5] Length = 90 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 38/82 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + I S + + F +F VK++ +V Sbjct: 1 MTKADIVSEIAKSTGVEKVQVQAIVEAFMDSIKTSLTNKNNVYLRGFGSFIVKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTITIPEHNIPAFKPA 82 >gi|237737338|ref|ZP_04567819.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] gi|229421200|gb|EEO36247.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] Length = 90 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 16/89 (17%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + ++ +++ L++K++ + + + +S V+G+ + + + V ++ +R Sbjct: 1 MTKKEFIELYAEKGNLTKKEAEKNINLFLESVEESLVKGDEVTFVGWGKWEVVERAAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+ Q+ + +K+ ++ V FK +L +I Sbjct: 61 RSPQSKEIIKVPAKKAVKFKVGKLLADKI 89 >gi|228911465|ref|ZP_04075263.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228848211|gb|EEM93067.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] Length = 84 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 39/71 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K + + L++ ++ V + I + E +++ SF TF V+++ +R G Sbjct: 1 MNKSELIKQVIIQSELTKPQASLVVDAVLESIQHALQNREHVQLLSFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKI 75 RN T + + I Sbjct: 61 RNPHTGEALTI 71 >gi|237740573|ref|ZP_04571054.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] gi|262067567|ref|ZP_06027179.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|294782350|ref|ZP_06747676.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] gi|229422590|gb|EEO37637.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] gi|291378682|gb|EFE86200.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|294480991|gb|EFG28766.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] Length = 92 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 +R ++ + V +F + + + GE I I ++ V ++ R+GRN +T +EV I R+ Sbjct: 18 TRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRLGRNPKTGEEVNIGERKS 77 Query: 81 VVFKAS 86 V F+ Sbjct: 78 VKFRPG 83 >gi|332884203|gb|EGK04471.1| hypothetical protein HMPREF9456_00798 [Dysgonomonas mossii DSM 22836] Length = 445 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 50/93 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ ++ DL+ ++K+ +++K++ F+ L I ++ E++KI F TF + + Sbjct: 1 MNERLSLQDLIDLLAKKQEITKKEAEVFLRELIAVISETIESNESVKIKDFGTFKLVKVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R ++ T + ++I + F +LK+ I Sbjct: 61 ARKSVDVNTGEAIEIAAHYKLSFTPDKLLKEAI 93 >gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Rv] gi|15842542|ref|NP_337579.1| DNA binding protein HU, putative [Mycobacterium tuberculosis CDC1551] gi|31794162|ref|NP_856655.1| DNA-binding protein HU [Mycobacterium bovis AF2122/97] gi|148662836|ref|YP_001284359.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra] gi|148824176|ref|YP_001288930.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis F11] gi|167969993|ref|ZP_02552270.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Ra] gi|215404970|ref|ZP_03417151.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 02_1987] gi|215412830|ref|ZP_03421542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 94_M4241A] gi|215428438|ref|ZP_03426357.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T92] gi|215431936|ref|ZP_03429855.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis EAS054] gi|215447253|ref|ZP_03434005.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T85] gi|218754746|ref|ZP_03533542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis GM 1503] gi|219559018|ref|ZP_03538094.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T17] gi|253797921|ref|YP_003030922.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis KZN 1435] gi|254233069|ref|ZP_04926396.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis C] gi|254365619|ref|ZP_04981664.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis str. Haarlem] gi|254552063|ref|ZP_05142510.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188010|ref|ZP_05765484.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis CPHL_A] gi|260202128|ref|ZP_05769619.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T46] gi|289444550|ref|ZP_06434294.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T46] gi|289448658|ref|ZP_06438402.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis CPHL_A] gi|289553224|ref|ZP_06442434.1| predicted protein [Mycobacterium tuberculosis KZN 605] gi|289571185|ref|ZP_06451412.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T17] gi|289746790|ref|ZP_06506168.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 02_1987] gi|289751663|ref|ZP_06511041.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T92] gi|289755102|ref|ZP_06514480.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289759111|ref|ZP_06518489.1| predicted protein [Mycobacterium tuberculosis T85] gi|289763166|ref|ZP_06522544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis GM 1503] gi|294993927|ref|ZP_06799618.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 210] gi|297635611|ref|ZP_06953391.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN 4207] gi|297732609|ref|ZP_06961727.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN R506] gi|298526456|ref|ZP_07013865.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 94_M4241A] gi|306777279|ref|ZP_07415616.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis SUMu001] gi|306781190|ref|ZP_07419527.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis SUMu002] gi|306785829|ref|ZP_07424151.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis SUMu003] gi|306794680|ref|ZP_07432982.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis SUMu005] gi|306798923|ref|ZP_07437225.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis SUMu006] gi|306804768|ref|ZP_07441436.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis SUMu008] gi|306808962|ref|ZP_07445630.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis SUMu007] gi|306969060|ref|ZP_07481721.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis SUMu009] gi|306973397|ref|ZP_07486058.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis SUMu010] gi|307081105|ref|ZP_07490275.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis SUMu011] gi|307085709|ref|ZP_07494822.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis SUMu012] gi|313659941|ref|ZP_07816821.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN V2475] gi|6014921|sp|P95109|DBH_MYCTU RecName: Full=DNA-binding protein HU homolog; AltName: Full=21 kDa laminin-2-binding protein; AltName: Full=28 kDa iron-regulated protein; Short=Irep-28; AltName: Full=Histone-like protein; Short=Hlp gi|38605697|sp|Q9XB18|DBH_MYCBO RecName: Full=DNA-binding protein HU homolog; AltName: Full=Histone-like protein; Short=Hlp gi|1694845|emb|CAB05427.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13882853|gb|AAK47393.1| DNA binding protein HU, putative [Mycobacterium tuberculosis CDC1551] gi|31619757|emb|CAD96697.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) [Mycobacterium bovis AF2122/97] gi|124602128|gb|EAY61138.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis C] gi|134151132|gb|EBA43177.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis str. Haarlem] gi|148506988|gb|ABQ74797.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra] gi|148722703|gb|ABR07328.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis F11] gi|253319424|gb|ACT24027.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis KZN 1435] gi|289417469|gb|EFD14709.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T46] gi|289421616|gb|EFD18817.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis CPHL_A] gi|289437856|gb|EFD20349.1| predicted protein [Mycobacterium tuberculosis KZN 605] gi|289544939|gb|EFD48587.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T17] gi|289687318|gb|EFD54806.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 02_1987] gi|289692250|gb|EFD59679.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T92] gi|289695689|gb|EFD63118.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289710672|gb|EFD74688.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis GM 1503] gi|289714675|gb|EFD78687.1| predicted protein [Mycobacterium tuberculosis T85] gi|298496250|gb|EFI31544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 94_M4241A] gi|308214329|gb|EFO73728.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis SUMu001] gi|308325973|gb|EFP14824.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis SUMu002] gi|308329504|gb|EFP18355.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis SUMu003] gi|308337000|gb|EFP25851.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis SUMu005] gi|308340814|gb|EFP29665.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis SUMu006] gi|308344677|gb|EFP33528.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis SUMu007] gi|308348627|gb|EFP37478.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis SUMu008] gi|308353353|gb|EFP42204.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis SUMu009] gi|308357197|gb|EFP46048.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis SUMu010] gi|308361151|gb|EFP50002.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis SUMu011] gi|308364744|gb|EFP53595.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis SUMu012] gi|323718365|gb|EGB27539.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis CDC1551A] gi|326904600|gb|EGE51533.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis W-148] gi|328457696|gb|AEB03119.1| hypothetical protein TBSG_00990 [Mycobacterium tuberculosis KZN 4207] Length = 214 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|15618331|ref|NP_224616.1| integration host factor Alpha [Chlamydophila pneumoniae CWL029] gi|15835949|ref|NP_300473.1| integration host factor alpha [Chlamydophila pneumoniae J138] gi|16752623|ref|NP_444887.1| integration host factor beta-subunit, putative [Chlamydophila pneumoniae AR39] gi|33241765|ref|NP_876706.1| integration host factor beta chain [Chlamydophila pneumoniae TW-183] gi|9789718|sp|Q9Z8C7|DBH_CHLPN RecName: Full=Probable DNA-binding protein HU gi|4376697|gb|AAD18560.1| Integration Host Factor Alpha [Chlamydophila pneumoniae CWL029] gi|7189266|gb|AAF38192.1| integration host factor beta-subunit, putative [Chlamydophila pneumoniae AR39] gi|8978788|dbj|BAA98624.1| integration host factor alpha [Chlamydophila pneumoniae J138] gi|33236274|gb|AAP98363.1| integration host factor beta chain [Chlamydophila pneumoniae TW-183] gi|269303292|gb|ACZ33392.1| DNA-binding protein HU [Chlamydophila pneumoniae LPCoLN] Length = 100 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93 GRN + + I RR V F +K+ I Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLI 93 >gi|295101480|emb|CBK99025.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii L2-6] Length = 102 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + LF++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++ + FKAS K+++ Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKL 89 >gi|291515896|emb|CBK65106.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 90 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/82 (24%), Positives = 38/82 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V I S + + + F +F VK++ +V Sbjct: 1 MTKADIVSEIAKSTGVEKVQVQAIVEAFMESIKTSLTQKNNVYLRGFGSFIVKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTITIPEHNIPAFKPA 82 >gi|260206310|ref|ZP_05773801.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis K85] gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis K85] gi|289540124|gb|EFD44702.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis K85] Length = 214 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|189461333|ref|ZP_03010118.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM 17136] gi|189431862|gb|EDV00847.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM 17136] Length = 371 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+ DL +++ ++ D+ FV TLF + +S + + +KI TF + + Sbjct: 1 MSDKFTQQDLADLLAQRHEMNPADAEAFVRTLFALVEESVISDKYVKIKGLGTFKLIEVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R ++ T + ++I + F S +++ + Sbjct: 61 ARESIDINTGERIEIREHSRISFTPDSTMRETV 93 >gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium bovis] Length = 205 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU homolog hupB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991359|ref|YP_002646048.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|4996103|dbj|BAA78330.1| MDP1 [Mycobacterium bovis] gi|121494515|emb|CAL72996.1| Probable DNA-binding protein HU homolog hupB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774474|dbj|BAH27280.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|264669723|gb|ACY72210.1| laminin-binding histone-like protein [Mycobacterium bovis BCG] Length = 205 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium leprae TN] gi|221230371|ref|YP_002503787.1| putative histone-like protein [Mycobacterium leprae Br4923] gi|6014920|sp|O33125|DBH_MYCLE RecName: Full=DNA-binding protein HU homolog; AltName: Full=21 kDa laminin-2-binding protein; AltName: Full=Histone-like protein; Short=Hlp gi|2414560|emb|CAB16449.1| histone-like DNA binding protein [Mycobacterium leprae] gi|6009551|dbj|BAA84958.1| 21-kDa laminin-2-binding protein [Mycobacterium leprae] gi|13093447|emb|CAC30636.1| probable histone-like protein [Mycobacterium leprae] gi|219933478|emb|CAR71778.1| probable histone-like protein [Mycobacterium leprae Br4923] Length = 200 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQR 94 >gi|308272437|emb|CBX29041.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.] Length = 90 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTL--FNEICDSAVRGEAIKIS--SFATFHVKQKG 60 +T+++LV +I+ + +++ T V L F + A++ + K++ F TF ++ Sbjct: 1 MTKAELVDAIAADAKITK---TAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRV 57 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN QT E+KI R VV KA LK+ + Sbjct: 58 ARKGRNPQTGAEIKIKARNVVKIKAGKKLKEAV 90 >gi|325268537|ref|ZP_08135167.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608] gi|324989065|gb|EGC21018.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608] Length = 91 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I + V G+ +++ F TF V ++ + G Sbjct: 1 MNKTELIEKIAASAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60 Query: 65 RNLQTNQEVKI 75 N T ++++I Sbjct: 61 INPATKEKIQI 71 >gi|259908918|ref|YP_002649274.1| integration host factor subunit beta [Erwinia pyrifoliae Ep1/96] gi|224964540|emb|CAX56050.1| Integration host factor beta-subunit (IHF-beta) [Erwinia pyrifoliae Ep1/96] gi|283478914|emb|CAY74830.1| Integration host factor beta-subunit (IHF-beta) [Erwinia pyrifoliae DSM 12163] Length = 95 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I++ F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDR 89 >gi|291302449|ref|YP_003513727.1| histone family protein DNA-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571669|gb|ADD44634.1| histone family protein DNA-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 185 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 18/92 (19%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + ++ + G RK + + + + EI + +GE + + F F +Q+ +R+ Sbjct: 1 MNKAEFIDALVEHLG-DRKTALKALDAMLEEIQRAVSKGEKVSFAGFGVFEKRQRAARMA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + V++ V F+ K+ + + Sbjct: 60 RNPRTGEAVRVKKTVVPAFRPGQGFKELVTGE 91 >gi|167763121|ref|ZP_02435248.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC 43183] gi|167699461|gb|EDS16040.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC 43183] Length = 376 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 44/93 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +KI F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93 >gi|290957139|ref|YP_003488321.1| histone-like DNA binding protein [Streptomyces scabiei 87.22] gi|260646665|emb|CBG69762.1| putative histone-like DNA binding protein [Streptomyces scabiei 87.22] Length = 217 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|257437801|ref|ZP_05613556.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165] gi|257199724|gb|EEU98008.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165] Length = 103 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + LF++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++ + FKAS K+++ Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKL 89 >gi|323345507|ref|ZP_08085730.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC 33269] gi|323093621|gb|EFZ36199.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC 33269] Length = 441 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 40/80 (50%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I K++ LS+K++ FV+ +F I ++ + +KI TF V R N+ T + Sbjct: 13 IQKKYSLSQKEADNFVSQMFEVISEALHTEKQVKIKGLGTFKVMSVSPRESVNVNTGERF 72 Query: 74 KIDPRRVVVFKASSILKKRI 93 I+ R + F + ++ R+ Sbjct: 73 VIEGRDKISFTPETSMRDRV 92 >gi|301167343|emb|CBW26925.1| DNA-binding protein HU-beta [Bacteriovorax marinus SJ] Length = 92 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 5 ITRSDLVKSI--SKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L+++I +KE +++KD+ F+ T + I + +GE + + F +F ++ + Sbjct: 1 MNKKELLETILKNKELNHMTKKDAELFLNTTIDTIKKTVKKGEDVSLIGFGSFSKVRRAA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R G N T +++KI + + FK K Sbjct: 61 RAGVNPATGEKIKIKAKNLPKFKPGKAWK 89 >gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacterium ulcerans] Length = 220 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like protein [Mycobacterium ulcerans Agy99] gi|62632019|gb|AAX89114.1| laminin-binding protein [Mycobacterium ulcerans] gi|118569666|gb|ABL04417.1| DNA-binding protein Hu HupB-like protein [Mycobacterium ulcerans Agy99] Length = 229 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacterium ulcerans] Length = 229 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|58979383|gb|AAW83356.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 42/80 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDAAAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 R T + +K+ RV FK Sbjct: 61 RVPSTGKTIKVPATRVAKFK 80 >gi|156097106|ref|XP_001614586.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148803460|gb|EDL44859.1| hypothetical protein, conserved [Plasmodium vivax] Length = 188 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/101 (21%), Positives = 51/101 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +S+ IT+ +++ +S E S+K + + +F+ I E I I F ++ + Sbjct: 54 ISQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRK 113 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R +N++T +++ I+ + FK S I + I +++ ++ Sbjct: 114 KRCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKR 154 >gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacterium ulcerans] Length = 229 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ P V F+ + K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >gi|260175099|ref|ZP_05761511.1| putative histone-like DNA-binding protein [Bacteroides sp. D2] gi|315923329|ref|ZP_07919569.1| HU family DNA-binding protein [Bacteroides sp. D2] gi|313697204|gb|EFS34039.1| HU family DNA-binding protein [Bacteroides sp. D2] Length = 88 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/83 (22%), Positives = 45/83 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K ++ + LS +++ + + + I ++ +GE I + F +F ++++ R G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 N T + I +R V F+ S Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGS 83 >gi|116254928|ref|YP_770763.1| putative DNA-binding protein HU-alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115259576|emb|CAK11544.1| putative DNA-binding protein Hu-alpha [Rhizobium leguminosarum bv. viciae 3841] Length = 92 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 36/85 (42%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ V + I ++AV G + F F VK R R Sbjct: 3 TTNEIADKIAGEHSLTKAQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKATPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +K+ + + F + LK Sbjct: 63 NPSTGATIKVAAAKKLAFTPAKALK 87 >gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186 [Mycobacterium tuberculosis SUMu004] gi|308333643|gb|EFP22494.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186 [Mycobacterium tuberculosis SUMu004] Length = 109 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|224282721|ref|ZP_03646043.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171] gi|310287180|ref|YP_003938438.1| DNA-binding protein HU [Bifidobacterium bifidum S17] gi|311064042|ref|YP_003970767.1| DNA-binding protein [Bifidobacterium bifidum PRL2010] gi|313139879|ref|ZP_07802072.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171] gi|309251116|gb|ADO52864.1| DNA-binding protein HU [Bifidobacterium bifidum S17] gi|310866361|gb|ADP35730.1| DNA-binding protein [Bifidobacterium bifidum PRL2010] gi|313132389|gb|EFR50006.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171] Length = 93 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GRN Sbjct: 5 KSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + ++I V A S+LKK + + Sbjct: 65 PRTGEIIEIPATYGVRISAGSLLKKAVTE 93 >gi|223937617|ref|ZP_03629520.1| histone family protein DNA-binding protein [bacterium Ellin514] gi|223893780|gb|EEF60238.1| histone family protein DNA-binding protein [bacterium Ellin514] Length = 95 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 6/96 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQ 58 M+K +++S L +I+ + G+++K + + + I + A + + + Sbjct: 1 MAKALSKSQLAAAIADKNGITKKQAVE----ILDHIAELAYKNAKNTFTLPGLGKLVLVN 56 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + +RVGRN T +++ I +RVV F+ + K I+ Sbjct: 57 RKARVGRNPATGEQINIPAKRVVKFRVAKAAKDSIL 92 >gi|325914662|ref|ZP_08177003.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325539164|gb|EGD10819.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 92 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 25/50 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + R DLV+ ++ E L + +TR V LF I +G + IS F F Sbjct: 1 MNRKDLVELLAHELDLPKHKTTRLVAMLFEAIVAQLGKGREVNISGFGVF 50 >gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_06550 [Mycobacterium kansasii ATCC 12478] Length = 217 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 49/86 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ P V F+ + K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155] gi|14194641|sp|Q9ZHC5|DBH_MYCS2 RecName: Full=DNA-binding protein HU homolog; AltName: Full=Histone-like protein; Short=Hlp gi|3930569|gb|AAD13809.1| histone-like protein [Mycobacterium smegmatis str. MC2 155] gi|67515139|gb|AAY68087.1| histone-like protein [Mycobacterium smegmatis str. MC2 155] gi|118172626|gb|ABK73522.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155] Length = 208 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P V F+ + K I Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >gi|154490160|ref|ZP_02030421.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC 43184] gi|154089052|gb|EDN88096.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC 43184] Length = 96 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 42/85 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++++++ GL ++ + + + + + ++ E I + F T + + R+ Sbjct: 1 MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLIGFGTLIPRPQTERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T V I R V FK L Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYL 85 >gi|311896283|dbj|BAJ28691.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054] Length = 93 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKGSR 62 + RS+LV ++++ ++RKD+ V F EI V +G E + I F TF + +R Sbjct: 1 MNRSELVAALAERAEVTRKDADA-VLAAFAEITGEVVAKGDEKVTIPGFLTFERTLRAAR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 60 TARNPQTGEPIQIAEGFSVKVSAGSKLKE 88 >gi|29840141|ref|NP_829247.1| integration host factor beta-subunit, putative [Chlamydophila caviae GPIC] gi|62184997|ref|YP_219782.1| integration host factor alpha-subunit [Chlamydophila abortus S26/3] gi|89898437|ref|YP_515547.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56] gi|332287322|ref|YP_004422223.1| integration host factor alpha-subunit [Chlamydophila psittaci 6BC] gi|29834489|gb|AAP05125.1| integration host factor beta-subunit, putative [Chlamydophila caviae GPIC] gi|62148064|emb|CAH63818.1| integration host factor alpha-subunit [Chlamydophila abortus S26/3] gi|89331809|dbj|BAE81402.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56] gi|313847906|emb|CBY16901.1| integration host factor alpha-subunit [Chlamydophila psittaci RD1] gi|325507160|gb|ADZ18798.1| integration host factor alpha-subunit [Chlamydophila psittaci 6BC] gi|328914565|gb|AEB55398.1| integration host factor, beta subunit, putative [Chlamydophila psittaci 6BC] Length = 100 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 GRN + + I RR V F +K+ I Sbjct: 63 GRNPKNATVPIHIPARRAVKFTPGKRMKRLI 93 >gi|319763435|ref|YP_004127372.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|330824318|ref|YP_004387621.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|317117996|gb|ADV00485.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|329309690|gb|AEB84105.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 111 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 46/100 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+ LV+ ++ + LS+ + + TL I + +G+ +++ F TF ++ +R G Sbjct: 12 MNRAQLVEILASKNDLSKTAANAVLETLTETIQTAVKKGDTVQLVGFGTFKSAKRAARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +N T +KI V F + K + RK K Sbjct: 72 KNPATGAALKIPASTVPKFVPGAKFKAVVDPKAAKRKAGK 111 >gi|29829226|ref|NP_823860.1| histone-like DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29606332|dbj|BAC70395.1| putative histone-like DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 217 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacterium ulcerans] Length = 220 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [Mycobacterium marinum M] gi|62632029|gb|AAX89119.1| laminin-binding protein [Mycobacterium ulcerans] gi|183175067|gb|ACC40177.1| DNA-binding protein Hu, HupB [Mycobacterium marinum M] Length = 220 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacterium ulcerans] Length = 211 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|296114688|ref|ZP_06833340.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295978784|gb|EFG85510.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 91 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 43/88 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ ++ + + L + +A G+ I + +F F VK+ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTETRKVLDALIETMTVAAKAGDEITLPNFGKFKVKEVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGATIQIAASRKLAFTPAKALKDSLND 91 >gi|251773075|gb|EES53631.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 84 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 25/48 (52%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 GE + + F TF ++ +R GRN +T Q +KI RV F A K Sbjct: 33 GERVTLPGFGTFSTAKRKARTGRNPRTGQAIKIPAMRVPKFTAGKAFK 80 >gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacterium ulcerans] Length = 211 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N Terminal Region Containing The Dimerization Domain And Dna Binding Domain Of Hu Protein(Histone Like Protein-Dna Binding) From Mycobacterium Tuberculosis [h37rv] gi|222447027|pdb|3C4I|B Chain B, Crystal Structure Analysis Of N Terminal Region Containing The Dimerization Domain And Dna Binding Domain Of Hu Protein(Histone Like Protein-Dna Binding) From Mycobacterium Tuberculosis [h37rv] Length = 99 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|167041244|gb|ABZ06000.1| putative bacterial DNA-binding protein [uncultured marine microorganism HF4000_005D21] gi|167045748|gb|ABZ10394.1| putative bacterial DNA-binding protein [uncultured marine bacterium HF4000_APKG3108] Length = 103 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ + + RKD + + + EI ++ R EA++I F F + +R+ Sbjct: 1 MVKSELMQQLCNIHPNILRKDIEKILDIIIFEIIEALYRNEAVEIRGFGRFKTVIRKARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + + ++I ++ + +K S IL KR+ Sbjct: 61 GRNPKNSTAIQIPAKKAIKWKMSKILFKRL 90 >gi|46446802|ref|YP_008167.1| putative integration host factor [Candidatus Protochlamydia amoebophila UWE25] gi|46400443|emb|CAF23892.1| putative integration host factor [Candidatus Protochlamydia amoebophila UWE25] Length = 120 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 13/92 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN--- 66 L+ SIS++ G+ D + ++I D +GE ++ F F V ++ ++GRN Sbjct: 24 LINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRNPKN 83 Query: 67 ------LQTNQEVKIDP----RRVVVFKASSI 88 + Q VK P R+VV + S + Sbjct: 84 AAVPIVIPARQAVKFTPGKKMRQVVEMEESYL 115 >gi|282861336|ref|ZP_06270401.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] gi|282563994|gb|EFB69531.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] Length = 218 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|119717520|ref|YP_924485.1| nucleoid protein Hbs [Nocardioides sp. JS614] gi|119538181|gb|ABL82798.1| bacterial nucleoid protein Hbs [Nocardioides sp. JS614] Length = 202 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 43/86 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+ + +++ + +RK + + ++ + I +GE + I+ F +F + + +R Sbjct: 1 MNKSEFIDALAARYEGNRKAAAHALESVLDTITREVAKGEKVAITGFGSFEKRVREARWV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +K V F A + LK Sbjct: 61 RNPQTGARIKAKKTAVPKFTAGADLK 86 >gi|15604988|ref|NP_219772.1| integration host factor alpha-subunit [Chlamydia trachomatis D/UW-3/CX] gi|15835156|ref|NP_296915.1| integration host factor beta subunit, putative [Chlamydia muridarum Nigg] gi|76788989|ref|YP_328075.1| integration host factor alpha-subunit [Chlamydia trachomatis A/HAR-13] gi|166154478|ref|YP_001654596.1| integration host factor alpha-subunit [Chlamydia trachomatis 434/Bu] gi|166155353|ref|YP_001653608.1| integration host factor alpha-subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802690|ref|YP_002887884.1| integration host factor alpha-subunit [Chlamydia trachomatis B/Jali20/OT] gi|237804612|ref|YP_002888766.1| integration host factor alpha-subunit [Chlamydia trachomatis B/TZ1A828/OT] gi|255311068|ref|ZP_05353638.1| integration host factor alpha-subunit [Chlamydia trachomatis 6276] gi|255317369|ref|ZP_05358615.1| integration host factor alpha-subunit [Chlamydia trachomatis 6276s] gi|255348627|ref|ZP_05380634.1| integration host factor alpha-subunit [Chlamydia trachomatis 70] gi|255503167|ref|ZP_05381557.1| integration host factor alpha-subunit [Chlamydia trachomatis 70s] gi|255506845|ref|ZP_05382484.1| integration host factor alpha-subunit [Chlamydia trachomatis D(s)2923] gi|270285328|ref|ZP_06194722.1| integration host factor alpha-subunit [Chlamydia muridarum Nigg] gi|270289344|ref|ZP_06195646.1| integration host factor alpha-subunit [Chlamydia muridarum Weiss] gi|301335738|ref|ZP_07223982.1| integration host factor alpha-subunit [Chlamydia trachomatis L2tet1] gi|301336725|ref|ZP_07224927.1| integration host factor alpha-subunit [Chlamydia muridarum MopnTet14] gi|54036943|sp|P64387|DBH_CHLMU RecName: Full=Probable DNA-binding protein HU gi|54040776|sp|P64386|DBH_CHLTR RecName: Full=Probable DNA-binding protein HU gi|3328679|gb|AAC67860.1| Integration Host Factor Alpha [Chlamydia trachomatis D/UW-3/CX] gi|7190578|gb|AAF39378.1| integration host factor beta subunit, putative [Chlamydia muridarum Nigg] gi|76167519|gb|AAX50527.1| integration host factor alpha-subunit [Chlamydia trachomatis A/HAR-13] gi|165930466|emb|CAP03959.1| integration host factor alpha-subunit [Chlamydia trachomatis 434/Bu] gi|165931341|emb|CAP06913.1| integration host factor alpha-subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272912|emb|CAX09823.1| integration host factor alpha-subunit [Chlamydia trachomatis B/TZ1A828/OT] gi|231273924|emb|CAX10716.1| integration host factor alpha-subunit [Chlamydia trachomatis B/Jali20/OT] gi|289525306|emb|CBJ14782.1| integration host factor alpha-subunit [Chlamydia trachomatis Sweden2] gi|296434856|gb|ADH17034.1| integration host factor alpha-subunit [Chlamydia trachomatis E/150] gi|296435783|gb|ADH17957.1| integration host factor alpha-subunit [Chlamydia trachomatis G/9768] gi|296436708|gb|ADH18878.1| integration host factor alpha-subunit [Chlamydia trachomatis G/11222] gi|296437643|gb|ADH19804.1| integration host factor alpha-subunit [Chlamydia trachomatis G/11074] gi|296438576|gb|ADH20729.1| integration host factor alpha-subunit [Chlamydia trachomatis E/11023] gi|297140142|gb|ADH96900.1| integration host factor alpha-subunit [Chlamydia trachomatis G/9301] gi|297748397|gb|ADI50943.1| Integration host factor beta-subunit [Chlamydia trachomatis D-EC] gi|297749277|gb|ADI51955.1| Integration host factor beta-subunit [Chlamydia trachomatis D-LC] Length = 100 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93 GRN + + I RR V F +K+ I Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLI 93 >gi|27228588|ref|NP_758638.1| DNA binding protein [Pseudomonas resinovorans] gi|219857010|ref|YP_002474042.1| DNA binding protein [Pseudomonas sp. CA10] gi|26106176|dbj|BAC41616.1| DNA binding protein [Pseudomonas resinovorans] gi|219688938|dbj|BAH10029.1| DNA binding protein [Pseudomonas putida] Length = 91 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LVK+I+ E G S+ + +L + + + G+ + + F TF ++ R G Sbjct: 1 MNRQELVKAIADESGHSQSTVGEVLNSLISTVQNVVAGGDKVSLVGFGTFESTKQAERQG 60 Query: 65 RNLQTNQEVKI 75 RN T + I Sbjct: 61 RNPSTGAPITI 71 >gi|77166413|ref|YP_344938.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|254435865|ref|ZP_05049372.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|76884727|gb|ABA59408.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|207088976|gb|EDZ66248.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] Length = 94 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 43/87 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV + + LS+ + R V LF I + + F +F V+++ +R G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 R+ Q+ + + I + FK S LK+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKE 87 >gi|114777026|ref|ZP_01452046.1| histone-like protein [Mariprofundus ferrooxydans PV-1] gi|114552547|gb|EAU55007.1| histone-like protein [Mariprofundus ferrooxydans PV-1] Length = 90 Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 I + G+A+ + F TF V ++ +R RN +T + +++ + FKA LK + Sbjct: 32 ITGTLANGDAVSLVGFGTFSVAERAARTARNPRTGEAIEVGASKAPKFKAGKALKDAV 89 >gi|167763389|ref|ZP_02435516.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC 43183] gi|167698683|gb|EDS15262.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC 43183] Length = 109 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 40/84 (47%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 17 KKMTKADIVNEITKNTGIDKVTVLATVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQK 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 77 TARNISKNTTIIIPEHNIPAFKPA 100 >gi|255603750|ref|XP_002538109.1| DNA-binding protein HU, putative [Ricinus communis] gi|223513783|gb|EEF24275.1| DNA-binding protein HU, putative [Ricinus communis] Length = 92 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 37/85 (43%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + L++ S V +F I +A G I F F VK +R R Sbjct: 3 TTNEIADKIAADHKLTKVQSKAIVEAVFAAITGAATSGAETSIPGFGKFKVKDTPAREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +K+ + + F + LK Sbjct: 63 NPGTGATIKVAASKKLAFTPAKALK 87 >gi|198277146|ref|ZP_03209677.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM 17135] gi|198269644|gb|EDY93914.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM 17135] Length = 91 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + + +S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLATLEAFMGSVKESLSKDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|160889023|ref|ZP_02070026.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC 8492] gi|270293860|ref|ZP_06200062.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479304|ref|ZP_07938439.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|156861490|gb|EDO54921.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC 8492] gi|270275327|gb|EFA21187.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904592|gb|EFV26411.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 91 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKTTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-binding protein hupb [Rhodococcus equi 103S] gi|325675901|ref|ZP_08155585.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311889820|emb|CBH49137.1| histone-like bacterial DNA-binding protein HupB [Rhodococcus equi 103S] gi|325553872|gb|EGD23550.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 242 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/94 (23%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ ++ V + + I + GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTASEAVEHVVDTIVRAVHAGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKALIAGGQK 94 >gi|262037630|ref|ZP_06011076.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264] gi|261748346|gb|EEY35739.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264] Length = 55 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 24/35 (68%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 +GE ++ + TF V+++ +R GRN QT +E+KI Sbjct: 1 AKGETVQFVGWGTFGVQKRAARTGRNPQTGKEIKI 35 >gi|325680359|ref|ZP_08159917.1| DNA-binding protein HU [Ruminococcus albus 8] gi|324107952|gb|EGC02210.1| DNA-binding protein HU [Ruminococcus albus 8] Length = 110 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + + V ++S K L++K T V ++ + I ++ G+++ F TF K + +R Sbjct: 1 MNKPEFVNAVSEKNPSLTKKTVTEVVDSVISTIQETVAAGDSVSFVGFGTFSSKVRAARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +++ I+ + V FKA K + + Sbjct: 61 SINPTTKEKIHIEEKTVPTFKAGKAFKDAVAE 92 >gi|124516626|gb|EAY58134.1| putative histone-like DNA-binding protein [Leptospirillum rubarum] Length = 91 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GE + + F TF ++ +R GRN +T +E+KI RV F A K I Sbjct: 40 GEKVTLVGFGTFSTVKRKARTGRNPRTGKEIKIPAMRVPKFSAGKAFKGAI 90 >gi|330995080|ref|ZP_08318997.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] gi|332879536|ref|ZP_08447231.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] gi|329576656|gb|EGG58159.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] gi|332682502|gb|EGJ55404.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 92 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 +T++++V ISK+ G+ + V + +S ++ E + + F +F +K++ + Sbjct: 1 MTKAEIVNEISKKTGIDKATVLTAVEAFMESVKESLIQKEDNVYLRGFGSFILKKRAKKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + ID + FK + + Sbjct: 61 ARNISKNTTIIIDEHNIPAFKPAKVF 86 >gi|282880537|ref|ZP_06289244.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] gi|281305640|gb|EFA97693.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] Length = 90 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 52/85 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ G+S+ + + + + I ++ V+GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIDRIAEAAGISKIAAKKALDGTTDAIKEALVKGEKVQLIGFGTFSVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T +++KI+ ++V FKA + L Sbjct: 61 INPSTKEKIKIEAKKVAKFKAGAEL 85 >gi|94967113|ref|YP_589161.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|94549163|gb|ABF39087.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 98 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/93 (24%), Positives = 43/93 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ +T++ LV+ +++ +S K + F+ +L + I + Sbjct: 1 MASGMTKTQLVRHMAESHEISNKTAAAFLESLAEVAIKETKKNGVFVIPGLGRLVKSNRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +RVGRN QT + +KI + VV F+ + K I Sbjct: 61 ARVGRNPQTGEPIKIPAKTVVKFRVAKAAKDSI 93 >gi|238898294|ref|YP_002923975.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466053|gb|ACQ67827.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 75 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L+ ++ + +S+ + V +L N + + G A+ ++ F TF VK++ +R GR Sbjct: 3 KNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTGR 61 >gi|298292191|ref|YP_003694130.1| histone family protein DNA-binding protein [Starkeya novella DSM 506] gi|296928702|gb|ADH89511.1| histone family protein DNA-binding protein [Starkeya novella DSM 506] Length = 92 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 48/88 (54%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +++++ L++ + V F+ I S GE +K+ F +F V + +R GR Sbjct: 3 TKNELVAAVAEQAKLTKAAAAAAVDATFDAIAASLKAGEEVKLIGFGSFSVVTRAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VKI+ + F LK+ + Sbjct: 63 NPRTGKPVKIEASKAPKFTPGKGLKETV 90 >gi|189465618|ref|ZP_03014403.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM 17393] gi|189437892|gb|EDV06877.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM 17393] Length = 59 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G + + SF TF VK+K R+ N T + + P+ V+ ++ S+ LK Sbjct: 8 GNIVSVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTTLK 55 >gi|320008332|gb|ADW03182.1| histone family protein DNA-binding protein [Streptomyces flavogriseus ATCC 33331] Length = 218 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + V++ V F+A K Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFK 85 >gi|325266084|ref|ZP_08132770.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394] gi|324982722|gb|EGC18348.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394] Length = 101 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + +S+L+ +++KE GL++ D+ + F + +A++ + I + F TF V ++ R Sbjct: 1 MNKSELIDAVAKESGLTKADAAK-AVDAFTSVVKTALKADDTITLVGFGTFKVAERAERQ 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N +T + + I RV F LK ++ Sbjct: 60 GLNPKTREAITIPAARVPKFTPGKGLKDALV 90 >gi|329954834|ref|ZP_08295851.1| LysM domain protein [Bacteroides clarus YIT 12056] gi|328526938|gb|EGF53949.1| LysM domain protein [Bacteroides clarus YIT 12056] Length = 412 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 44/93 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +KI F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDII 93 >gi|85706119|ref|ZP_01037214.1| DNA-binding protein HU [Roseovarius sp. 217] gi|85669283|gb|EAQ24149.1| DNA-binding protein HU [Roseovarius sp. 217] Length = 95 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++ E G +K + + ++ I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALADEMGSDKKTAGAALDSVIAIITREVSAGGAVTLPGIGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T +++K + +VV + LK Sbjct: 61 ERMVRNPATGEQMKKEADKVVKMTIAKALK 90 >gi|148653384|ref|YP_001280477.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] gi|148572468|gb|ABQ94527.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] Length = 99 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M++ I +SDL++ ++ ++ D V + + + + I++ F TF + + Sbjct: 1 MTEVINKSDLIQDVAARCDYMADSDVDNAVREILELLSEKLISNNRIEVRGFGTFCLHHR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T + V + + + FK L++ + Sbjct: 61 EARQGRNPKTGEMVLVPQKAIPHFKPGKALREGV 94 >gi|282890554|ref|ZP_06299077.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499551|gb|EFB41847.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 102 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 19/79 (24%), Positives = 37/79 (46%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ SI++E + D + + + ++ GE ++ F F V ++ ++ Sbjct: 10 TMTKKKLINSIAQEKQIHPNDVRNVIQAFLDRMTEALAEGERLEFRDFGVFEVVERKQKI 69 Query: 64 GRNLQTNQEVKIDPRRVVV 82 GRN + I P R V Sbjct: 70 GRNPKNAAVPIIIPARSAV 88 >gi|304372872|ref|YP_003856081.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1] gi|304309063|gb|ADM21543.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1] gi|330723543|gb|AEC45913.1| nucleoid DNA-binding protein [Mycoplasma hyorhinis MCLD] Length = 90 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 39/86 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I E L+ KD+ + + F+ + RG+ + I+ F TF K Sbjct: 1 MNKKELLDLIVDETQLTHKDTEAVLNSFFDIVTSQIKRGDKVVIAGFGTFQGVFKEQSTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T EV I + V FK S LK Sbjct: 61 INPITKSEVNIPAKMVAKFKPSKNLK 86 >gi|299117325|emb|CBN75285.1| DNA-binding protein HU [Ectocarpus siliculosus] Length = 161 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 F + E+ D G I + F TF + + R GRN +T +E+KI F AS Sbjct: 94 FTDVVMQEVAD----GNKISLQGFGTFEGRARKGRTGRNPRTGEELKIKATTAPAFSASK 149 Query: 88 ILKKRI 93 K + Sbjct: 150 AFKDMV 155 >gi|298480649|ref|ZP_06998845.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298273083|gb|EFI14648.1| DNA-binding protein HU [Bacteroides sp. D22] Length = 93 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/82 (21%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ I+++ G+ + V + +S V G + + F +F +K++ RV Sbjct: 1 MTKAELITRIAQQSGIEKTIVMTVVEAFMENVKESMVAGNDVFLRGFGSFVIKRRAKRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + + FK + Sbjct: 61 RNISENTTIVVPAHFFPAFKPA 82 >gi|253682948|ref|ZP_04863735.1| DNA-binding protein HU [Clostridium phage D-1873] gi|253560874|gb|EES90336.1| DNA-binding protein HU [Clostridium phage D-1873] Length = 95 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 1 MSKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M KT +V+ + KE +S+KD + + + + V+ E + TF + Sbjct: 1 MVKTELLGRMVEKLEGKEVKVSKKDMDAIYSAVLETVAE-VVKEEGKLTTPIGTFKNTTR 59 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 G+RVGRN ++ +E++I + FK S +K++ Sbjct: 60 GARVGRNPRSGEEIQIAESHALTFKQSKAVKEQ 92 >gi|189465619|ref|ZP_03014404.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM 17393] gi|189437893|gb|EDV06878.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM 17393] Length = 433 Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + +L++ ++++ G+ + D+ FV F I +S + +KI TF + Sbjct: 1 MNEKLNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNINTGERFEIQGHTKVSFTPEPTLKDLI 93 >gi|257469043|ref|ZP_05633137.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317063289|ref|ZP_07927774.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688965|gb|EFS25800.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 94 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 34/69 (49%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + + DS E + + TF VK+ R+ N +T + KI P +VFK I Sbjct: 26 IEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERIFNNPRTKKIEKISPINKIVFKQGKI 85 Query: 89 LKKRIMDDM 97 LKK+ +++ Sbjct: 86 LKKKFNEEI 94 >gi|325300026|ref|YP_004259943.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324319579|gb|ADY37470.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 91 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I++ G+ R+ + N + S E + + F +F VK++ + Sbjct: 1 MTKAEIVNEIARNTGIDRQTVLTTLEAFMNSVKTSLSNDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|303257412|ref|ZP_07343425.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|331001348|ref|ZP_08324972.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] gi|302859769|gb|EFL82847.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|329568607|gb|EGG50409.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] Length = 94 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 +TR + T+ I S GE + + F TF ++ +RV N T +++++ PR V F Sbjct: 21 ATRTLNTMIRSIMTSVKNGEPVVLVGFGTFRQVKRKARVICNPHTGEKLELKPRSVPKFV 80 Query: 85 ASSILKKRIMDD 96 ++ K+ I+D+ Sbjct: 81 PGTLFKQ-IVDE 91 >gi|296129746|ref|YP_003636996.1| histone family protein DNA-binding protein [Cellulomonas flavigena DSM 20109] gi|296021561|gb|ADG74797.1| histone family protein DNA-binding protein [Cellulomonas flavigena DSM 20109] Length = 93 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV++++++ GL+ D+ + + L + + G ++ I F ++ +R Sbjct: 2 SVNRTELVQAVAEKAGLTNVDADKALKALQEVVVEQLAAGGSVSIPGFLAVARAERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N QT ++++I V A S LK+ + Sbjct: 62 GVNPQTGEKLEIPAGHRVKITAGSALKRAV 91 >gi|322836844|ref|YP_004210758.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165931|gb|ADW71631.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 125 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-----GEAIKISSFATFHVKQKGSRV 63 +LVK ++++ LS K S F F+ + +A++ GE I Q+ +R+ Sbjct: 37 ELVKLVAEKMELSLKQSAAF----FDLLASTAIQETKKNGE-FTIPGLGKLVKAQRAARI 91 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + +KI + V F+ + K I Sbjct: 92 GRNPQTGESIKIKAKTAVKFRVAKAAKDMI 121 >gi|330984063|gb|EGH82166.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 90 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 37/80 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ ++ + G+ RKD + L I D + TF V ++ +R G Sbjct: 1 MTKKELIDALIAKSGVDRKDVEAVINALPETIKDEIRATGQSAVYGLGTFKVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 RN T ++I +VV K Sbjct: 61 RNPSTGAAIEIPASKVVSVK 80 >gi|114765808|ref|ZP_01444901.1| DNA-binding protein HU [Pelagibaca bermudensis HTCC2601] gi|114541807|gb|EAU44844.1| DNA-binding protein HU [Roseovarius sp. HTCC2601] Length = 95 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 44/90 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K ++ + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGADKKTASTALDAITGIITKEVAEGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T ++ K + + V + LK Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALK 90 >gi|317476992|ref|ZP_07936234.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316906785|gb|EFV28497.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 389 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +K+ F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLI 93 >gi|224824984|ref|ZP_03698090.1| histone family protein DNA-binding protein [Lutiella nitroferrum 2002] gi|224602655|gb|EEG08832.1| histone family protein DNA-binding protein [Lutiella nitroferrum 2002] Length = 62 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 42 RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +G+ + + F TF+V ++ R GRN +T + I R F+A LK Sbjct: 11 QGDTVTLVGFGTFYVGERAERTGRNPKTGDSITIPAARSPKFRAGKALK 59 >gi|319956531|ref|YP_004167794.1| histone family protein DNA-binding protein [Nitratifractor salsuginis DSM 16511] gi|319418935|gb|ADV46045.1| histone family protein DNA-binding protein [Nitratifractor salsuginis DSM 16511] Length = 90 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 43/87 (49%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D + ++++ GLS+KD+ + I ++ R E + F +F +K R Sbjct: 3 KTDFIAEVAQKSGLSKKDTEAVIDAALETITEALKRRENVSFLGFGSFQAVKKNEREITI 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++VK+ + V FK +LK+ + Sbjct: 63 PGTTRKVKVPAKYSVRFKPGKLLKEAV 89 >gi|218130464|ref|ZP_03459268.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM 20697] gi|317473947|ref|ZP_07933226.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|329954389|ref|ZP_08295481.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] gi|217987343|gb|EEC53673.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM 20697] gi|316909789|gb|EFV31464.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|328527657|gb|EGF54650.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] Length = 91 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|254884846|ref|ZP_05257556.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|254837639|gb|EET17948.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] Length = 94 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L K I+ + G + + V +L I S + E + + F +F +K++ + Sbjct: 1 MTKAELCKKITDQTGCDMQTVSAIVESLMVSIKGSLEKEENVYLRGFGSFIIKRRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK++ Sbjct: 61 RNISKNTTIIIPAHNIPAFKSA 82 >gi|329960937|ref|ZP_08299216.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328532223|gb|EGF59027.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 91 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|301166851|emb|CBW26428.1| integration host factor beta-subunit [Bacteriovorax marinus SJ] Length = 108 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +I K+ L+ K + + F+ + S E I+I F +F + + G Sbjct: 8 MTKADLIAAIEKQANLTHKQAESIINICFDSMIKSLYNDERIEIRGFGSFANRNYKAYEG 67 Query: 65 RNLQT 69 RN +T Sbjct: 68 RNPKT 72 >gi|221128059|ref|XP_002155705.1| PREDICTED: similar to hlpA [Hydra magnipapillata] gi|260222710|emb|CBA32540.1| DNA-binding protein HU-alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 94 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/79 (22%), Positives = 41/79 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+++++ + LS+ + R + L I + E +++ F TF ++ +R G Sbjct: 1 MNKGELIEALAAKSELSKAAAGRTLDALIEIITAKVAKKEDVQLIGFGTFKAAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVF 83 +N +T + +KI V F Sbjct: 61 KNPRTGEALKITATTVPKF 79 >gi|239907249|ref|YP_002953990.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|283850195|ref|ZP_06367484.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|303247218|ref|ZP_07333492.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|239797115|dbj|BAH76104.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|283574221|gb|EFC22192.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|302491377|gb|EFL51265.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 91 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/89 (19%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++++ L ++ V + + + + + ++I F +F +K G Sbjct: 1 MNKSELIKTLAETKDLHIDEAADIVNAFVDSVKQALINEDRVEIRGFGSFKIKGYKGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ V + P+++ F+ LK+ + Sbjct: 61 RNPKSGDVVTVAPKKLPFFRPGKELKEYL 89 >gi|309813267|ref|ZP_07706983.1| DNA-binding protein HU [Dermacoccus sp. Ellin185] gi|308432763|gb|EFP56679.1| DNA-binding protein HU [Dermacoccus sp. Ellin185] Length = 119 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + + ++DLV + G S+K + V + + I G + I+ F TF + Sbjct: 8 VGRKMNKADLVDRLEVRLG-SKKAALEAVEAVVDVIIREVAAGNKVGITGFGTFERVDRA 66 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN +T + V+I V F + K D Sbjct: 67 ARTGRNPRTGEAVRIGATSVPKFTPGTNFKAVTAD 101 >gi|29346321|ref|NP_809824.1| putative integration host factor IHF subunit alpha [Bacteroides thetaiotaomicron VPI-5482] gi|253568258|ref|ZP_04845669.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29338216|gb|AAO76018.1| putative integration host factor IHF alpha subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251842331|gb|EES70411.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 487 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL+ ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFTPDTNLRDTI 93 >gi|224540004|ref|ZP_03680543.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus DSM 14838] gi|224518371|gb|EEF87476.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus DSM 14838] Length = 471 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + +L++ ++++ G+ + D+ FV F I +S + +KI TF + Sbjct: 1 MNEKLNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNINTGERFEIQGHTKVSFAPEPALKDLI 93 >gi|189425695|ref|YP_001952872.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421954|gb|ACD96352.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 96 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ + G+++ + + + + G+ + + F TF + +R G Sbjct: 1 MKKADLVAKMATDAGITKAQAEKALAAFTAATEAALKAGDKVTLVGFGTFSTISRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT +E+KI + F LK Sbjct: 61 RNPQTGKEIKIAAKTSAKFSPGKGLK 86 >gi|270643381|ref|ZP_06222167.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212] gi|270317269|gb|EFA28837.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212] Length = 46 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 50 SFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 F TF V ++ +R GRN QT E++I +V F + LK I Sbjct: 2 GFGTFKVNERAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAI 45 >gi|189466527|ref|ZP_03015312.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM 17393] gi|224540249|ref|ZP_03680788.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus DSM 14838] gi|189434791|gb|EDV03776.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM 17393] gi|224518128|gb|EEF87233.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus DSM 14838] Length = 91 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMDTVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|114776643|ref|ZP_01451686.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] gi|114552729|gb|EAU55160.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] Length = 102 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ GLS+ + V I + G + + F F V + +R Sbjct: 1 MNKTNLINHVASSAGLSKSAAGDAVEAAIGGIINVLSDGGTVSLVGFGRFSVIARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ +FK S LK + Sbjct: 61 RNPRTGETIEVAASNAPIFKPSKALKDAV 89 >gi|225851318|ref|YP_002731552.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] gi|225646385|gb|ACO04571.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] Length = 92 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 4/90 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T +L +SK + + + + V +F+ + +RG+ +++ F F+ K + S Sbjct: 1 MTYKELKIQVSKNAQVPVEVADKVVEEVFHTLKSVMLRGDRLQVPGFGVFYTKIRSS--- 57 Query: 65 RNLQTNQEVKIDP-RRVVVFKASSILKKRI 93 R ++T+ E+K P +RV VF + LKK I Sbjct: 58 RKVKTHGEIKQLPSKRVPVFAPAKALKKEI 87 >gi|330444386|ref|YP_004377372.1| histone-like DNA-binding protein [Chlamydophila pecorum E58] gi|328807496|gb|AEB41669.1| Bacterial histone-like DNA-binding protein [Chlamydophila pecorum E58] Length = 100 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93 GRN + + I R+ V F +K+ I Sbjct: 63 GRNPKNAAVPIHIPARKAVKFTPGKRMKRLI 93 >gi|149913075|ref|ZP_01901609.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b] gi|149813481|gb|EDM73307.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b] Length = 95 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/90 (22%), Positives = 44/90 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++ E G +K + + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALADEMGTDKKTAGTALDAVTAIITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T +++K + +VV + LK Sbjct: 61 ERMVRNPATGEQIKKEADKVVKMTIAKALK 90 >gi|144898899|emb|CAM75763.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 87 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 51 FATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 F TF ++ +R GRN QT + ++I + FKASS LKK Sbjct: 47 FGTFSKSERPARQGRNPQTGKTIEIAASSTIKFKASSSLKK 87 >gi|67459500|ref|YP_247124.1| DNA-binding protein HU [Rickettsia felis URRWXCal2] gi|239946853|ref|ZP_04698606.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes scapularis] gi|67005033|gb|AAY61959.1| DNA-binding protein HU [Rickettsia felis URRWXCal2] gi|239921129|gb|EER21153.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes scapularis] Length = 110 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ D+ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 36 LTKADAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 95 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 96 QPTFRAGRKMKE 107 >gi|16330050|ref|NP_440778.1| DNA binding protein HU [Synechocystis sp. PCC 6803] gi|1652537|dbj|BAA17458.1| DNA binding protein HU [Synechocystis sp. PCC 6803] Length = 135 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/98 (19%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 5 ITRSDLVKSIS----KEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + + +LV +++ ++ G +++K+ ++ + I + GE + + F +F ++ Sbjct: 36 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 95 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + R GRN +T ++ I +V F A + K ++ + Sbjct: 96 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPE 133 >gi|114326682|ref|YP_743839.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] gi|114314856|gb|ABI60916.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] Length = 101 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +DL+ I+K ++ V+ I + GE ++IS F V ++ +R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 65 RNLQTNQEVKI 75 RN QT ++I Sbjct: 61 RNPQTGATIEI 71 >gi|218131130|ref|ZP_03459934.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM 20697] gi|217986650|gb|EEC52984.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM 20697] Length = 397 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +K+ F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLI 93 >gi|124007135|sp|Q4UKH2|DBH_RICFE RecName: Full=DNA-binding protein HU Length = 99 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ D+ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 25 LTKADAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 84 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 85 QPTFRAGRKMKE 96 >gi|3334159|sp|P73418|DBH_SYNY3 RecName: Full=DNA-binding protein HU Length = 100 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/98 (19%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 5 ITRSDLVKSIS----KEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + + +LV +++ ++ G +++K+ ++ + I + GE + + F +F ++ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + R GRN +T ++ I +V F A + K ++ + Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPE 98 >gi|296535865|ref|ZP_06898024.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC 49957] gi|296263815|gb|EFH10281.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC 49957] Length = 89 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + + G + + R L I + + SF TF V++ +R G Sbjct: 1 MSKAFIAQVLQDSLGCTGVAANRAAGELIAAIVKDMKKQGGFTLPSFGTFTVRKTKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VKI + V FKAS L+K + Sbjct: 61 MNPRTGEPVKIKAGKTVRFKASPNLRKSV 89 >gi|157803381|ref|YP_001491930.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel] gi|157784644|gb|ABV73145.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel] Length = 110 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 38/72 (52%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ D+ + + + + + ++ I I+ F +F + + +R GRN +T ++KID Sbjct: 36 LTKADAEKALNLVLDSVINAIKSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 95 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 96 QPTFRAGRKMKE 107 >gi|255534852|ref|YP_003095223.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10] gi|255341048|gb|ACU07161.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10] Length = 96 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/91 (20%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 + +S+L+ +++ + G+++ + + + + + + + + + + F TF V ++ +R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N T + +KI + V FKA + L +M Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSVM 91 >gi|209543183|ref|YP_002275412.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530860|gb|ACI50797.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + SF TF V + +R N +T + VK+ + V FKAS +LKK I Sbjct: 44 LPSFGTFSVHKTKARKALNPRTGEPVKVKAGKTVRFKASPVLKKTI 89 >gi|300113361|ref|YP_003759936.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] gi|299539298|gb|ADJ27615.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] Length = 109 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFN-EICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +L I+ + G+ D V F ++ G+ +++S F F+ + +R RN Sbjct: 24 ELAGRIAAQTGME-TDQVEVVLAAFKKQVIADLTSGQEVRLSHFGKFYARHMEAREARNP 82 Query: 68 QTNQEVKIDPRRVVVFKA 85 +T + +++ PR + FKA Sbjct: 83 RTGEAIQVPPRSYLRFKA 100 >gi|260425403|ref|ZP_05779383.1| DNA-binding protein HU [Citreicella sp. SE45] gi|260423343|gb|EEX16593.1| DNA-binding protein HU [Citreicella sp. SE45] Length = 95 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 44/90 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K ++ + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGADKKTASAALDAITGIITKEVADGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T ++ K + + V + LK Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALK 90 >gi|114327347|ref|YP_744504.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] gi|114315521|gb|ABI61581.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] Length = 100 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + SF TF V++ +R G N +T +++K+ + V FKAS LKK + Sbjct: 55 LPSFGTFTVRKTKARKGLNPRTGEQIKVKAGKTVRFKASPNLKKSV 100 >gi|80159860|ref|YP_398604.1| histone-like DNA binding protein [Clostridium phage c-st] gi|78675450|dbj|BAE47872.1| histone-like DNA binding protein [Clostridium phage c-st] Length = 86 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 KE +S+KD + + + + V+ E + TF +G+RVGRN ++ +E++I Sbjct: 8 KEVKVSKKDMDAIYSVVLETVAE-VVKEEGKLTTPIGTFKNTTRGARVGRNPRSGEEIQI 66 Query: 76 DPRRVVVFKASSILKKR 92 + FK S +K+ Sbjct: 67 AESHALTFKQSKAVKEE 83 >gi|262037516|ref|ZP_06010975.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264] gi|261748446|gb|EEY35826.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264] Length = 57 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 24/35 (68%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 +GE ++ + TF V+++ +R GRN QT +E+KI Sbjct: 1 AKGETVQFVGWGTFGVQKRAARKGRNPQTGKEIKI 35 >gi|300743697|ref|ZP_07072717.1| DNA-binding protein HU [Rothia dentocariosa M567] gi|311112948|ref|YP_003984170.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931] gi|300380058|gb|EFJ76621.1| DNA-binding protein HU [Rothia dentocariosa M567] gi|310944442|gb|ADP40736.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931] Length = 106 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 37/81 (45%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 R++LV ++++ G S+ + +F S +GE I I + + +R GRN Sbjct: 5 RTELVAEVAEKSGKSQATVNAVLDAVFQAFETSVSKGEKITIPGWLAIERTDRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASS 87 QT + ++I V A S Sbjct: 65 PQTGETIQIPAGHGVKLTAGS 85 >gi|189485144|ref|YP_001956085.1| integration host factor alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287103|dbj|BAG13624.1| integration host factor alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 86 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ ++S+ S+K++ V +F E+ +S G+ + I+ F +F++ + ++ Sbjct: 1 MTKNDIAIALSRILS-SKKEAEEAVNKVFEEMSNSLKNGDKVIITGFGSFNMFETKTKRV 59 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN +T +++ I P + + FK S Sbjct: 60 RNPRTCEKLLIAPMKKIRFKQS 81 >gi|186471029|ref|YP_001862347.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184197338|gb|ACC75301.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 124 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQKGS 61 + + +L+ +++ G S+ + + + + + RGE I++ F +F + Sbjct: 1 MNKQELIDAVAASTGESKASTGEALDAILEAVTSAVTRGETIQLIQLIGFGSFSTGARLE 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKA 85 R GRNL T + I + V F A Sbjct: 61 RTGRNLSTGDTITIAAAKTVKFTA 84 >gi|304382433|ref|ZP_07364932.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973] gi|304336441|gb|EFM02678.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973] Length = 90 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ GL++ D+ + + I D+ V G+ I + F TF V ++ +R G Sbjct: 1 MNKTELIDQIANGSGLTKVDARKALDATVKAIKDALVAGDKIALIGFGTFSVNERPAREG 60 Query: 65 RNLQT 69 N T Sbjct: 61 INPAT 65 >gi|294056334|ref|YP_003549992.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293615667|gb|ADE55822.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 91 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 28/45 (62%) Query: 46 IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +++ F TF V ++ +R G N QT +++KI + V FKA + LK Sbjct: 44 VQLIGFGTFSVTKRAAREGINPQTGEKIKIKASKAVKFKAGAGLK 88 >gi|218247718|ref|YP_002373089.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|257060945|ref|YP_003138833.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] gi|218168196|gb|ACK66933.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|256591111|gb|ACV01998.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] Length = 95 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/89 (17%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ + +K + ++ I ++ + + + F +F + + +R G Sbjct: 1 MNKGELIDAVAERAQVPKKQAEAVISATIETIMEAVSSEDKVTLVGFGSFEARDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+++ I +V F A K ++ Sbjct: 61 RNPKTNEKMVIPATKVPAFSAGKQFKTKV 89 >gi|150007792|ref|YP_001302535.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|255013499|ref|ZP_05285625.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|256840058|ref|ZP_05545567.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|262381699|ref|ZP_06074837.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|298376838|ref|ZP_06986793.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|301310172|ref|ZP_07216111.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149936216|gb|ABR42913.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|256738988|gb|EEU52313.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|262296876|gb|EEY84806.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|298266716|gb|EFI08374.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|300831746|gb|EFK62377.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 94 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 41/85 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ + GL ++++ + + + + E I + F T + + R+ Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T V I R V FK L Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFL 85 >gi|319902742|ref|YP_004162470.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319417773|gb|ADV44884.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 91 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/82 (23%), Positives = 38/82 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMEAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|255689974|ref|ZP_05413649.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|260624581|gb|EEX47452.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] Length = 71 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +++K FVT++ N + GE + + F TF V ++ R G N T + I ++ Sbjct: 1 MTKKALDAFVTSVTNAMK----AGEKVSLVGFGTFSVSERAERTGINPSTKATITIPAKK 56 Query: 80 VVVFKASSILKKRI 93 V FKA + L + Sbjct: 57 VAKFKAGAELSAAV 70 >gi|149927320|ref|ZP_01915576.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105] gi|149824034|gb|EDM83257.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105] Length = 98 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + S+ + + + + + G+ + + F TF + +R G Sbjct: 1 MNKTELIDAIATKSECSKAAAGKMLDAFIDTVSQQMADGDKVVLVGFGTFQTGARAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +KI V F LK ++ Sbjct: 61 RNPRTGETIKIAAAVVPKFTPGQGLKTKV 89 >gi|157825356|ref|YP_001493076.1| DNA-binding protein HU [Rickettsia akari str. Hartford] gi|157799314|gb|ABV74568.1| DNA-binding protein HU [Rickettsia akari str. Hartford] Length = 110 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78 L++ D+ + + + + + SA+R I I+ F +F + + +R GRN +T ++KID Sbjct: 36 LTKADAEKALNLVLDSVI-SAIRSHYNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAY 94 Query: 79 RVVVFKASSILKK 91 F+A +K+ Sbjct: 95 NQPTFRAGRKMKE 107 >gi|281424724|ref|ZP_06255637.1| DNA-binding protein HU-beta [Prevotella oris F0302] gi|299142061|ref|ZP_07035195.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735] gi|281401094|gb|EFB31925.1| DNA-binding protein HU-beta [Prevotella oris F0302] gi|298576523|gb|EFI48395.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735] Length = 91 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ GLS+ D+ + + I ++ V G+ I++ F TF V ++ +R G Sbjct: 1 MNKTELIDKIAAGAGLSKADAKKALDATTAAIKEALVAGDKIQLVGFGTFSVNERPAREG 60 Query: 65 RN 66 N Sbjct: 61 IN 62 >gi|218778638|ref|YP_002429956.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218760022|gb|ACL02488.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 90 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS--SFATFHVKQKGSR 62 +T+ +L++ ++K+ +++ + + + F E A++ + K++ F TF ++ +R Sbjct: 1 MTKPELIEKMAKDAKITKAQAAAALKS-FTEGVKMALKKKDGKLTLVGFGTFSKVRRKAR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + +KI V FK LK+ I Sbjct: 60 KGRNPQTGEPIKIKASNAVKFKPGKALKESI 90 >gi|157164945|ref|YP_001466788.1| DNA-binding protein HU 1 (DNA-binding protein II; HB) [Campylobacter concisus 13826] gi|157101488|gb|EAT97269.2| DNA-binding protein, HU family [Campylobacter concisus 13826] Length = 100 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ +++++ + GLS+KD+ + V I +G+ I F TF + +R R Sbjct: 3 KAEFIQAVADKAGLSKKDTLKVVDATLETIQAVLEKGDTISFIGFGTFGTADRAARKARV 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91 T + + + + V FK LK+ Sbjct: 63 PGTKKVIDVPASKAVKFKVGKKLKE 87 >gi|315608921|ref|ZP_07883893.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249301|gb|EFU29318.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 493 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 42/83 (50%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 ++L + +S + +S+ ++ FV +F + D + + +KI SF TF + R ++ Sbjct: 12 TELARMLSSKHNMSQANAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGSVKDRESVDV 71 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 T + + I+ R + F + L+ Sbjct: 72 NTGERIVIEGRNKINFTPDNALR 94 >gi|308178354|ref|YP_003917760.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] gi|308178355|ref|YP_003917761.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] gi|307745817|emb|CBT76789.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] gi|307745818|emb|CBT76790.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] Length = 94 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 40/90 (44%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV +++ + S+ + +F D +GE + I + + +R Sbjct: 2 AMNRSELVAAVAAKTENSQVAVNGVLDAVFEVFVDQISKGEKVSIPGWLAVERTDRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + ++I V A S LK + Sbjct: 62 GRNPQTGEAIQIPAGHSVKLTAGSKLKAAV 91 >gi|297516633|ref|ZP_06935019.1| transcriptional regulator HU subunit beta [Escherichia coli OP50] Length = 63 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RN 66 RN Sbjct: 61 RN 62 >gi|258543687|ref|YP_003189120.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|329113852|ref|ZP_08242623.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001] gi|256634765|dbj|BAI00741.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256637821|dbj|BAI03790.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256640875|dbj|BAI06837.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256643930|dbj|BAI09885.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256646985|dbj|BAI12933.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256650038|dbj|BAI15979.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256653028|dbj|BAI18962.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656082|dbj|BAI22009.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] gi|326696862|gb|EGE48532.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001] Length = 89 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 L + I + R + SF TF V++ +R N +T ++VK+ + V FKAS LKK Sbjct: 28 LIDAIVEELKREGGFTLPSFGTFTVRKTKARKALNPRTGEQVKVKAGKTVRFKASPNLKK 87 Query: 92 RI 93 + Sbjct: 88 AV 89 >gi|292905267|ref|YP_003541138.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413] gi|75705005|gb|ABA24680.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413] Length = 97 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/93 (18%), Positives = 45/93 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ + +S+K + + + I ++ G + + F +F + + R G Sbjct: 1 MNKAELIQAVAAKANVSQKQAETVLNATTDTIVETVANGGKVILVGFGSFEARARKEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN +TN+++ I V F K + + Sbjct: 61 RNPKTNEKMIIPATTVPAFSPGKHFKTEVTATL 93 >gi|189463294|ref|ZP_03012079.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM 17136] gi|189430024|gb|EDU99008.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM 17136] Length = 91 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/82 (20%), Positives = 39/82 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I++ G+ + + + + +S E + + F +F VK++ + Sbjct: 1 MTKADIVNEIARNTGIDKATVLTTLEAFMDSVKESLSNDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPA 82 >gi|170739317|ref|YP_001767972.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] gi|168193591|gb|ACA15538.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] Length = 102 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R+ L++ ++ L + V + + I ++ + G+ I++ F + +R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V++ +R V F+AS + +R+ Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERL 90 >gi|46579547|ref|YP_010355.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|46448962|gb|AAS95614.1| DNA-binding protein HU, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311233363|gb|ADP86217.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 95 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++R+D R + + + G + + ++ +R GRN +T + + I RR Sbjct: 21 ITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVERAARAGRNPRTGESIAIPARR 80 Query: 80 VVVFKASSILKKRI 93 VV FKA L++ + Sbjct: 81 VVTFKAGKDLREAL 94 >gi|308271404|emb|CBX28012.1| DNA-binding protein HU-alpha [uncultured Desulfobacterium sp.] Length = 88 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 +T+++LV +++ G+S+ + + ++ + I + + + + + F TF ++ +R Sbjct: 1 MTKAELVDKAAEDAGISKTAAAATLNSIMDSIAKTLKKKDGKVTLVGFGTFTKVRRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN QT + +KI VV F+ L+ Sbjct: 61 GRNPQTGEPIKIKACTVVKFRPGKKLR 87 >gi|302534743|ref|ZP_07287085.1| integration host factor, beta subunit [Streptomyces sp. C] gi|302443638|gb|EFL15454.1| integration host factor, beta subunit [Streptomyces sp. C] Length = 93 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|254386635|ref|ZP_05001932.1| histone-like DNA-binding protein [Streptomyces sp. Mg1] gi|194345477|gb|EDX26443.1| histone-like DNA-binding protein [Streptomyces sp. Mg1] Length = 93 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L I + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAETIGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGFSVKVSAGSKLKE 88 >gi|283458729|ref|YP_003363367.1| nucleoid DNA-binding protein [Rothia mucilaginosa DY-18] gi|283134782|dbj|BAI65547.1| bacterial nucleoid DNA-binding protein [Rothia mucilaginosa DY-18] Length = 95 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 37/81 (45%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 R++LV ++++ G S+ + +F S +GE I I + + +R GRN Sbjct: 5 RTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASS 87 QT + ++I V A S Sbjct: 65 PQTGETIQIPAGHGVKLTAGS 85 >gi|262198187|ref|YP_003269396.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] gi|262081534|gb|ACY17503.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] Length = 105 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 11/97 (11%) Query: 5 ITRSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIK-------ISSFAT 53 +T+ +L+ + ++G L++K + +F E+ D V+ + K F T Sbjct: 1 MTKQELIDRVYAKYGKPANLTKKAVGDIIGGVFEELSDYFVKEKVTKKLTPRFTFPGFGT 60 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 F K + +R GR+ QT E+ I + F S LK Sbjct: 61 FTKKHREARKGRHPQTGAEITIGATDTLTFSIGSDLK 97 >gi|226354832|ref|YP_002784572.1| DNA-binding protein HU [Deinococcus deserti VCD115] gi|226316822|gb|ACO44818.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] Length = 115 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I ++ L++ ++ L++K + V T+ + + G + + T V Q +R G Sbjct: 27 IAKTQLIEMVADRTSLNKKQAGDAVATMLECVVGALREGRNVGLPGLGTLSVAQTAARTG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T++++ I + + FK +S LK + Sbjct: 87 VRPGTSEKITIPAGKKIRFKVASTLKGNL 115 >gi|78355172|ref|YP_386621.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217577|gb|ABB36926.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 95 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 + D + E +++ + V ++ R GRN QT Q + I R+VV F + L Sbjct: 36 LADGIAKNEGVRLPNVGALTVAERAERQGRNPQTGQPMTIPARKVVKFSPAKSL 89 >gi|170741538|ref|YP_001770193.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] gi|168195812|gb|ACA17759.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] Length = 102 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 V ++ S+ D+ V + + I ++ + G+ I++ F + +R RN +T Sbjct: 10 VAELNPHLPYSQADAV--VRAILDRITEALMEGDQIELRGFGALKTTAREARRSRNPRTG 67 Query: 71 QEVKIDPRRVVVFKASSILKKRI 93 + V++ +R V F+AS + R+ Sbjct: 68 EAVEVPAKRDVAFRASREMNGRL 90 >gi|258648339|ref|ZP_05735808.1| putative integration host factor IHF alpha subunit [Prevotella tannerae ATCC 51259] gi|260851504|gb|EEX71373.1| putative integration host factor IHF alpha subunit [Prevotella tannerae ATCC 51259] Length = 423 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + ++ + ++ +S+K + F F+ I + +KI F TF V Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R N+ T + ++ID + F S LK I Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLI 93 >gi|309774624|ref|ZP_07669648.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] gi|308917524|gb|EFP63240.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] Length = 88 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 43/88 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++++ I+ + G+S + + + I D + E I+I+ F TF + R Sbjct: 1 MNKNEIIREIAYKQGISSEVTKGIIDQFIELIGDKMAQREKIQIAGFGTFEARFVSERSS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT +++ I FK LK++ Sbjct: 61 RNPQTGEKIIIPGHFSPKFKPGKALKEK 88 >gi|240047359|ref|YP_002960747.1| nucleoid DNA-binding protein [Mycoplasma conjunctivae HRC/581] gi|239984931|emb|CAT04924.1| Bacterial nucleoid DNA-binding protein [Mycoplasma conjunctivae] Length = 90 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ IS + +S+K+ +++ F E+ + + + I+SF TF K + V Sbjct: 1 MNKKELIEIISAKTEMSQKNVEIILSSFFEEVAHVMKKQDKLVINSFGTFQGIYKEASVS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T E++ + V FK S LK+ + Sbjct: 61 INPLTKSEIRTPAKTVAKFKPSKNLKEFV 89 >gi|330999754|ref|ZP_08323462.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] gi|329573916|gb|EGG55496.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] Length = 92 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 37/71 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G S+ D + L +I + G+ I + F TF ++ +R G Sbjct: 1 MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARAG 60 Query: 65 RNLQTNQEVKI 75 RN T ++I Sbjct: 61 RNPATGATIQI 71 >gi|163841555|ref|YP_001625960.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209] gi|162955031|gb|ABY24546.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209] Length = 107 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 36/83 (43%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 RS+LV ++ + S+ + LF+ S GE I I + + +R GRN Sbjct: 5 RSELVAEVAAKAETSQAAVNNVLDALFSTFESSVAAGEKITIPGWLAVERTDRAARTGRN 64 Query: 67 LQTNQEVKIDPRRVVVFKASSIL 89 QT + ++I V A S L Sbjct: 65 PQTGETIQIAAGHSVKLTAGSKL 87 >gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776259|ref|ZP_05217775.1| DNA-binding protein HU [Mycobacterium avium subsp. avium ATCC 25291] gi|41397942|gb|AAS05572.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10] gi|293652258|gb|ADE60770.1| laminin-binding histone-like protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|293652260|gb|ADE60771.1| laminin-binding histone-like protein [Mycobacterium avium subsp. paratuberculosis] gi|293652262|gb|ADE60772.1| laminin-binding histone-like protein [Mycobacterium avium subsp. paratuberculosis] gi|293652264|gb|ADE60773.1| laminin-binding histone-like protein [Mycobacterium avium subsp. avium] gi|293652266|gb|ADE60774.1| laminin-binding histone-like protein [Mycobacterium avium] Length = 212 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|162146838|ref|YP_001601299.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl 5] gi|161785415|emb|CAP54963.1| putative DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + SF TF V + +R N +T + VK+ + V FKAS +LKK + Sbjct: 44 LPSFGTFTVHKTKARKALNPRTGEPVKVKAGKTVRFKASPVLKKAV 89 >gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894254|gb|EFG74011.1| histone family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 211 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacterium avium 104] gi|118166892|gb|ABK67789.1| DNA-binding protein HU [Mycobacterium avium 104] Length = 217 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 6 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 66 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 99 >gi|297516328|ref|ZP_06934714.1| transcriptional regulator HU subunit alpha [Escherichia coli OP50] Length = 63 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RN 66 RN Sbjct: 61 RN 62 >gi|295689634|ref|YP_003593327.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] gi|295431537|gb|ADG10709.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] Length = 92 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/88 (20%), Positives = 43/88 (48%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + + DS G+ +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIDAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + V + F+ LK + Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSL 90 >gi|110347039|ref|YP_665857.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1] gi|110283150|gb|ABG61210.1| histone-like DNA-binding protein [Chelativorans sp. BNC1] Length = 92 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 39/83 (46%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +++ I+ GL++ + V ++F EI +A G I +F F K+ +R GRN Sbjct: 5 NEIADKIAGAHGLTKAQAKTIVESVFKEIAGAAAAGAETSIPAFGKFKPKKTAAREGRNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 T ++I + F + LK Sbjct: 65 STGATIRIAASTKLTFTPAKALK 87 >gi|237710577|ref|ZP_04541058.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|237720884|ref|ZP_04551365.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|229449719|gb|EEO55510.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|229455299|gb|EEO61020.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] Length = 92 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/86 (22%), Positives = 36/86 (41%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+K +++ G++ + + E D+ G + I F T K +V RN Sbjct: 3 KEELIKQVAESTGIAICEVRTVIEAALKETVDAVANGRTLYIRGFGTLSPKHYKRKVARN 62 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKR 92 + N+ + I FK + K R Sbjct: 63 IHKNETIVIAEHYTPHFKPAKSFKNR 88 >gi|317504625|ref|ZP_07962592.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606] gi|315664246|gb|EFV03946.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606] Length = 91 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 36/62 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ GLS+ ++ + + I ++ V+G+ I++ F TF V ++ +R G Sbjct: 1 MNKTELIDKIAAGAGLSKAEAKKALDATTAAIKEALVKGDKIQLVGFGTFSVNERPAREG 60 Query: 65 RN 66 N Sbjct: 61 IN 62 >gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] gi|299793137|gb|ADJ43512.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] Length = 225 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 45/84 (53%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L++++S+ G +K + + V L + I + +GE + I+ F F + + +R RN Sbjct: 4 KAQLIEALSERLGDDKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTARN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 +T + VK+ V F+A + K Sbjct: 64 PRTGEAVKVKKTNVPAFRAGTTFK 87 >gi|296135611|ref|YP_003642853.1| histone family protein DNA-binding protein [Thiomonas intermedia K12] gi|294339747|emb|CAZ88109.1| DNA-binding protein HU-beta (NS1) (HU-1) [Thiomonas sp. 3As] gi|295795733|gb|ADG30523.1| histone family protein DNA-binding protein [Thiomonas intermedia K12] Length = 90 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/65 (21%), Positives = 38/65 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++ L++ + R + L + + + +G+++ + F TF V ++ +R G Sbjct: 1 MNKAELIEHMANNADLNKAQAGRALDALIDAVRRTLKKGDSVSLIGFGTFAVTKRAARTG 60 Query: 65 RNLQT 69 RN +T Sbjct: 61 RNPRT 65 >gi|283852590|ref|ZP_06369857.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|283572038|gb|EFC20031.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] Length = 86 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 +T+++ +K + E G++ +D+ + L ++ ++ +R GE++K TF R Sbjct: 1 MTQTEFIKRFATESGMT-QDAAKNCLALAGQMVEATMRAGESVKFPCLGTFTPVATKERQ 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 GRN +T + + I + FKA+ Sbjct: 60 GRNPRTGEPLTIPAGVRIKFKAA 82 >gi|34556922|ref|NP_906737.1| putative DNA-binding protein II (HB) [Wolinella succinogenes DSM 1740] gi|34482637|emb|CAE09637.1| PUTATIVE DNA-BINDING PROTEIN II (HB) [Wolinella succinogenes] Length = 91 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/89 (20%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KDS + ++ + ++ +G+++ F F ++ +R Sbjct: 1 MKKAEFIDAVALKAGLSKKDSELALDSILEVLTEALAQGKSVNFIGFGGFSTIERAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + T++ V + R V FK LK+ + Sbjct: 61 KVPGTDKVVDVPAVRAVKFKVGKQLKEAV 89 >gi|39939140|ref|NP_950906.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722249|dbj|BAD04739.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-----EAIKISSFATFHVKQKGSRVGRN 66 K + K+ L+ K S +N ++ ++ E + F +K + S +GRN Sbjct: 4 KELIKKIALANKTSVTKTEEFYNIFENTLIKAITTNEEVVLFPKIGKFKLKSRKSYIGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 +T +++KI + VV FK S +K Sbjct: 64 PKTKKKIKISAKTVVTFKLSKTIK 87 >gi|303258444|ref|ZP_07344447.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|302858890|gb|EFL81978.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] Length = 92 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/71 (23%), Positives = 37/71 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G S+ D + L +I + G+ I + F TF ++ +R G Sbjct: 1 MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARTG 60 Query: 65 RNLQTNQEVKI 75 RN T ++I Sbjct: 61 RNPATGATIQI 71 >gi|37522993|ref|NP_926370.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] gi|35213996|dbj|BAC91365.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] Length = 96 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++K+ L++KD V F+ I ++ RG+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAKKAKLAKKDVDAIVGAAFDVIVEAVSRGDKVTLVGFGSFEPRKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++ I V F A ++ + Sbjct: 61 RNPKTREKMTIAATTVPAFSAGKQFREAV 89 >gi|317180599|dbj|BAJ58385.1| dna-binding protein hu [Helicobacter pylori F32] Length = 94 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLVK K S++++ ++ + + RGE++++ F F ++ + G+ Sbjct: 8 DLVKEAGKY--NSKREAEEAISAFILAVETALSRGESVELVGFGKFETAEQKGKEGKVPG 65 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92 >gi|42523574|ref|NP_968954.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus HD100] gi|39575780|emb|CAE79947.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus HD100] Length = 90 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 42/86 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ ++++ ++ S + I ++ G+ +K+ F TF + +R G Sbjct: 1 MNKAQLVELVAEKTKTTKSQSELILDATLEAIQEALKDGDEVKLVGFGTFSRSSRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VKI + FK LK Sbjct: 61 RNPKTGETVKIPSAYIPKFKPGKDLK 86 >gi|119494127|ref|ZP_01624637.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] gi|119452166|gb|EAW33370.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] Length = 177 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 23 KDSTRFVTTLFNEICDSAVR--------GEAIKISSFATFHVKQKGSRVGRNLQTNQEVK 74 ++ST F + DS ++ G +KI F F+ K+ GSR RN +T + + Sbjct: 7 QNSTGFSEATVQAVVDSLIKFVQLELRSGNEVKIPDFGVFYPKELGSRPSRNPRTGESII 66 Query: 75 IDPRRVVVFKASSILKKRIMDDM 97 P+ F+ +K I + + Sbjct: 67 AKPKTKPKFRFYDSFEKMIQETL 89 >gi|237716501|ref|ZP_04546982.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408099|ref|ZP_06084647.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645093|ref|ZP_06722819.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|229444148|gb|EEO49939.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354907|gb|EEZ03999.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639599|gb|EFF57891.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] Length = 472 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|298484175|ref|ZP_07002341.1| integration host factor IHF alpha subunit [Bacteroides sp. D22] gi|298269679|gb|EFI11274.1| integration host factor IHF alpha subunit [Bacteroides sp. D22] Length = 472 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|313203644|ref|YP_004042301.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] gi|312442960|gb|ADQ79316.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] Length = 494 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I+ +++ +S + +S++ S F+ + + I +S + G+ +KI +F TF ++ R Sbjct: 6 ISSQEVIDLVSSKAQVSKRVSEDFLKVMISTIEESLLSGDVVKIKNFGTFKLQWNEPRKS 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N+ + +++ + V F +LK + Sbjct: 66 VNVHSGEDILLAGYYKVTFTPDVVLKDLV 94 >gi|293373986|ref|ZP_06620327.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292631062|gb|EFF49699.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] Length = 471 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|299145604|ref|ZP_07038672.1| putative integration host factor IHF alpha subunit [Bacteroides sp. 3_1_23] gi|298516095|gb|EFI39976.1| putative integration host factor IHF alpha subunit [Bacteroides sp. 3_1_23] Length = 471 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|327313607|ref|YP_004329044.1| DNA-binding protein HU [Prevotella denticola F0289] gi|326944082|gb|AEA19967.1| DNA-binding protein HU [Prevotella denticola F0289] Length = 419 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 37/84 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + ++++ + L D+ FV T F I G +K+ TF V+ R N+ T Sbjct: 9 ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQSVKPRESVNVNT 68 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + V I+ V F + +K+ + Sbjct: 69 GERVLIEGHDKVTFTPDTAMKELV 92 >gi|256830460|ref|YP_003159188.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256579636|gb|ACU90772.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 109 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 I ++ +G+ I + +F V +R+GRN +T + + I RR + FK L++ + Sbjct: 50 IREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGLRELL 107 >gi|125624460|ref|YP_001032943.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493268|emb|CAL98235.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071248|gb|ADJ60648.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 101 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 30/49 (61%) Query: 42 RGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 G + IS+F TF V+++ +R+ ++ + +++ + + + VF+A LK Sbjct: 20 EGATVHISNFGTFEVRKRAARISHDVHSREKILVGEQNIPVFRAGKALK 68 >gi|325854317|ref|ZP_08171516.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|325484111|gb|EGC87045.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] Length = 419 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/84 (23%), Positives = 37/84 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + ++++ + L D+ FV T F I G +K+ TF V+ R N+ T Sbjct: 9 ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQSVKPRESVNVNT 68 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + V I+ V F + +K+ + Sbjct: 69 GERVLIEGHDKVTFTPDTAMKELV 92 >gi|319941885|ref|ZP_08016206.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319804538|gb|EFW01408.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 93 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + R +LV ++ S+ + R + + EI SAVR GE++ + F TF R Sbjct: 1 MNRLELVDRVAARNTASKAEVDRIIVSALEEII-SAVRCGESVTLIGFGTFKAVDCAPRT 59 Query: 64 GRNLQTNQEVKI 75 GRN T + ++I Sbjct: 60 GRNPSTGESIRI 71 >gi|330993012|ref|ZP_08316950.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1] gi|329759782|gb|EGG76288.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1] Length = 89 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 L I R + SF TF VK+ +R N +T + VK+ + V FKAS LKK Sbjct: 28 LIQAIVKELKREGGFTLPSFGTFTVKKTKARQALNPRTGEPVKVKAGKTVRFKASPNLKK 87 Query: 92 RI 93 + Sbjct: 88 AV 89 >gi|302544965|ref|ZP_07297307.1| DNA-binding protein HU [Streptomyces hygroscopicus ATCC 53653] gi|307331132|ref|ZP_07610259.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] gi|302462583|gb|EFL25676.1| DNA-binding protein HU [Streptomyces himastatinicus ATCC 53653] gi|306883212|gb|EFN14271.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] Length = 93 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAEVTGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKE 88 >gi|296114622|ref|ZP_06833275.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295978978|gb|EFG85703.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 89 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 L I R + SF TF VK+ +R N +T + VK+ + V FKAS LKK Sbjct: 28 LMEAIIKELKREGGFTLPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFKASPNLKK 87 Query: 92 RI 93 + Sbjct: 88 AV 89 >gi|159186493|ref|NP_396041.2| DNA binding protein [Agrobacterium tumefaciens str. C58] gi|159141553|gb|AAK90482.2| DNA binding protein [Agrobacterium tumefaciens str. C58] Length = 76 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +++ + V T+F I +A G I F F +K R RN T +K+ + Sbjct: 1 MTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNPATGATIKVAAAK 60 Query: 80 VVVFKASSILK 90 + F+ + LK Sbjct: 61 KLTFQPAKALK 71 >gi|83950622|ref|ZP_00959355.1| DNA-binding protein HU [Roseovarius nubinhibens ISM] gi|83838521|gb|EAP77817.1| DNA-binding protein HU [Roseovarius nubinhibens ISM] Length = 95 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T+S L +++E G +K + + + I G A+ + + +++ Sbjct: 1 MAKPLTKSQLSAVLAEEMGSDKKSAAAALDAVCAVITREVSNGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ RN T Q++K + +VV + LK Sbjct: 61 ERMVRNPATGQQIKKEADKVVKMTIAKALK 90 >gi|325269257|ref|ZP_08135876.1| putative integration host factor IHF alpha subunit [Prevotella multiformis DSM 16608] gi|324988486|gb|EGC20450.1| putative integration host factor IHF alpha subunit [Prevotella multiformis DSM 16608] Length = 420 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/84 (22%), Positives = 40/84 (47%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + +++K++ LS D++ FV ++F I G +K+ TF ++ R N+ T Sbjct: 9 ITGALAKQYKLSASDASVFVDSVFAIISSELKDGRPVKVKGLGTFKIQSVKPRESVNVNT 68 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + V I + F + +K+ + Sbjct: 69 GERVLIKGHDKITFTPDAAMKELV 92 >gi|27383423|ref|NP_774952.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110] gi|27356598|dbj|BAC53577.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110] Length = 92 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 37/85 (43%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+K + L + + V +F I D+A + F F VK R GR Sbjct: 3 TATEIADEIAKAYNLPKAQAKAIVDGVFKSIADAAASDAETNVPGFGKFKVKHTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +KI + + F + LK Sbjct: 63 NPSTGATIKIAAAKKLTFAPAKALK 87 >gi|260431902|ref|ZP_05785873.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157] gi|260415730|gb|EEX08989.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157] Length = 95 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/90 (22%), Positives = 42/90 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K + + + N I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGTDKKSANAALEAITNLITREVSAGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R RN T + + +VV + LK Sbjct: 61 ERQVRNPATGETFTKEADKVVKMTIAKALK 90 >gi|160882774|ref|ZP_02063777.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483] gi|156111798|gb|EDO13543.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483] Length = 471 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|260170243|ref|ZP_05756655.1| putative integration host factor IHF alpha subunit [Bacteroides sp. D2] gi|315918606|ref|ZP_07914846.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692481|gb|EFS29316.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 470 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|237720680|ref|ZP_04551161.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449515|gb|EEO55306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 470 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|255009783|ref|ZP_05281909.1| integration host factor, beta subunit [Bacteroides fragilis 3_1_12] gi|313147572|ref|ZP_07809765.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313136339|gb|EFR53699.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 97 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ +I++ +++ D + T F+ ++ G++I I F T K++ ++V Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ V + V FK K ++ Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQV 89 >gi|217034118|ref|ZP_03439538.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10] gi|216943402|gb|EEC22858.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10] Length = 94 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLVK K S++++ +T + + +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGKY--NSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKEGKVPG 65 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVGE 92 >gi|119774748|ref|YP_927488.1| HU family DNA-binding protein [Shewanella amazonensis SB2B] gi|119767248|gb|ABL99818.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B] Length = 91 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L K I+ G+S+ ++ R + + I + GE + + F TF ++ R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ FK + LK+ I Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >gi|291613626|ref|YP_003523783.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291583738|gb|ADE11396.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 98 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ + S+ L+ D V + ++I ++I F TF + R Sbjct: 1 MTRSELIQQLASRHPELTSNDIEMSVRLILDKISSVLENKARVEIRGFGTFATLHRPPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N +T + VK+ + V F+A L+ R+ Sbjct: 61 GHNPKTGKVVKVPAKYVPHFRAGKELRVRV 90 >gi|332673359|gb|AEE70176.1| DNA-binding protein HU [Helicobacter pylori 83] Length = 94 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLVK K S++++ +T + + +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGKY--NSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKEGKVPG 65 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92 >gi|261837934|gb|ACX97700.1| histone-like DNA-binding protein HU [Helicobacter pylori 51] gi|317177333|dbj|BAJ55122.1| dna-binding protein hu [Helicobacter pylori F16] Length = 94 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLVK K S++++ +T + + +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGKY--NSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKEGKVPG 65 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92 >gi|331004374|ref|ZP_08327847.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411104|gb|EGG90523.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon 107 str. F0167] Length = 93 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + R++LV +++K+ G +++K+ + + + + + I++ F TF + +R Sbjct: 1 MNRTELVDAMAKKMGNSVTKKEVESALKSFVDVVTEELSNKGKIQLVGFGTFETSVRPAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + +KI V FK LK Sbjct: 61 EGRNPRTGETMKIAESVVPKFKPGKALK 88 >gi|297159968|gb|ADI09680.1| DNA-binding protein HU 1 [Streptomyces bingchenggensis BCW-1] Length = 93 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAEVTGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKE 88 >gi|189220184|ref|YP_001940824.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] gi|189187042|gb|ACD84227.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] Length = 99 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 8/96 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRF-----VTTLFNEICDSAVRGEAIKISSFATFHVK 57 K ++ LV+ + K G KD+T+ V + N + ++ +++ F TF V Sbjct: 7 KRFNKASLVEVVQKNMG---KDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVI 63 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+G N +T +++KI + V F LK+++ Sbjct: 64 TRKARMGVNPKTGEKIKIKASKTVRFSPGKELKEKL 99 >gi|162146745|ref|YP_001601204.1| DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209543268|ref|YP_002275497.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161785320|emb|CAP54866.1| putative DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209530945|gb|ACI50882.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + SF TF VK+ +R N +T + VK+ + V FKAS LKK + Sbjct: 44 LPSFGTFTVKKTKARKALNPRTGEPVKVKAGKTVRFKASPNLKKAV 89 >gi|23007144|ref|ZP_00049143.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 74 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 30/51 (58%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G+ +++ F F VK++ +R GRN +T + V + + + VFK ++ R+ Sbjct: 12 GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRL 62 >gi|167725689|ref|ZP_02408925.1| DNA-binding protein Hu-beta [Burkholderia pseudomallei DM98] Length = 69 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/69 (21%), Positives = 35/69 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ +++K L++ + + V + + I + + +S F TF + + +R G Sbjct: 1 MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60 Query: 65 RNLQTNQEV 73 RN T + + Sbjct: 61 RNPATGEAI 69 >gi|315637348|ref|ZP_07892566.1| DNA-binding protein HU [Arcobacter butzleri JV22] gi|315478391|gb|EFU69106.1| DNA-binding protein HU [Arcobacter butzleri JV22] Length = 91 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KD+ V + + I ++ V+ E++ F TF + +R Sbjct: 1 MNKAEFIDAVAAKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + T + V + V FK LK+ + Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAV 89 >gi|46201151|ref|ZP_00055681.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 87 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 51 FATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 F TF ++ +R GRN +T + ++I + FKASS LKK Sbjct: 47 FGTFSKSERPARQGRNPRTGKTIEIKASSTIKFKASSALKK 87 >gi|320334434|ref|YP_004171145.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] gi|319755723|gb|ADV67480.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] Length = 115 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/92 (23%), Positives = 41/92 (44%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + ++ LV ++ L+RK S + I + G+++ + TF V+ Sbjct: 24 SSKVGKTQLVDLVTDRTSLNRKQSAEAIDAALGIIVSALRDGKSVGLPGLGTFAVRATAE 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R G T++ + I + V FK +S LK + Sbjct: 84 RTGVKPGTSERITIAAGKKVGFKVASTLKGNL 115 >gi|312131596|ref|YP_003998936.1| histone family protein DNA-binding protein [Leadbetterella byssophila DSM 17132] gi|311908142|gb|ADQ18583.1| histone family protein DNA-binding protein [Leadbetterella byssophila DSM 17132] Length = 96 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/82 (21%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS++ G+ + ++ + F + + GEAI + F +F K++ + Sbjct: 1 MTKAEVISIISEKTGVDKAATSATIEAFFETVKEQLSGGEAIYVRGFGSFVNKKRAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN+ V + + FK S Sbjct: 61 RNISKKTTVTVPAHYIPSFKPS 82 >gi|108563246|ref|YP_627562.1| DNA-binding protein HU [Helicobacter pylori HPAG1] gi|107837019|gb|ABF84888.1| DNA-binding protein HU [Helicobacter pylori HPAG1] Length = 94 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRVGRNL 67 DLVK K S K + F ++A+ +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGK---YSSKREAEEAISAFTLAVETALSKGESVELVGFGKFETAEQKGKEGKVP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 65 GSDKTYKTEDKRVPKFKPGKILKQKVEE 92 >gi|228982427|ref|ZP_04142686.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228776610|gb|EEM24918.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] Length = 94 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/89 (21%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + LS+ ++ V T N I ++ GE + + F F K++ SR Sbjct: 1 MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R + +EV++ + + F+ K ++ Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKV 89 >gi|34580834|ref|ZP_00142314.1| DNA-binding protein HU [Rickettsia sibirica 246] gi|157828089|ref|YP_001494331.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith'] gi|238651025|ref|YP_002916882.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic] gi|28262219|gb|EAA25723.1| DNA-binding protein HU [Rickettsia sibirica 246] gi|157800570|gb|ABV75823.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith'] gi|238625123|gb|ACR47829.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic] Length = 110 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ ++ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 36 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 95 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 96 QPTFRAGRKMKE 107 >gi|20137641|sp|Q92J57|DBH_RICCN RecName: Full=DNA-binding protein HU Length = 99 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ ++ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 25 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 84 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 85 QPTFRAGRKMKE 96 >gi|300727619|ref|ZP_07061008.1| DNA-binding protein HU [Prevotella bryantii B14] gi|299775139|gb|EFI71742.1| DNA-binding protein HU [Prevotella bryantii B14] Length = 521 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK I ++L K + LS D+ +FV +F+ + + + +KI F TF V Sbjct: 1 MSK-IGVNELAKVLVNTHKLSVDDAEQFVRLMFDTVNEGLQEDKQVKIKGFGTFKVLSVK 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R ++ T + + I+ R + F +I+K Sbjct: 60 DRESVDVNTGERIIIEGRDKISFTPDAIVK 89 >gi|16126202|ref|NP_420766.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|221234973|ref|YP_002517409.1| DNA-binding protein HU [Caulobacter crescentus NA1000] gi|239977107|sp|B8GX11|DBH_CAUCN RecName: Full=DNA-binding protein HU gi|239977108|sp|P0CAV2|DBH_CAUCR RecName: Full=DNA-binding protein HU gi|13423420|gb|AAK23934.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|220964145|gb|ACL95501.1| DNA-binding protein HU [Caulobacter crescentus NA1000] Length = 92 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/88 (20%), Positives = 42/88 (47%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + DS G+ +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + V + F+ LK + Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSL 90 >gi|332308727|ref|YP_004436577.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176056|gb|AEE25309.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 92 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/86 (18%), Positives = 42/86 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +++ ++ G++++++ + + + + + + + F F + + R+G Sbjct: 1 MNKQHVIEIMALASGITQREAKLALNAFTDAVQVTLQNNDKVSLVGFGNFSTRHRAERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT + + I + FKAS LK Sbjct: 61 RNPQTGEPLTIPAATIPEFKASKCLK 86 >gi|255013881|ref|ZP_05286007.1| putative DNA-binding protein HU [Bacteroides sp. 2_1_7] gi|256839777|ref|ZP_05545286.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262381911|ref|ZP_06075049.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298375536|ref|ZP_06985493.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|256738707|gb|EEU52032.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262297088|gb|EEY85018.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298268036|gb|EFI09692.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] Length = 100 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 V + I + F F VK+K R+ N + + P+ V VFK + +K R+ Sbjct: 41 VDNDTIYLQGFGQFEVKKKAERISVNPANGKRYLVPPKLVPVFKPGTTVKNRL 93 >gi|281425613|ref|ZP_06256526.1| putative integration host factor IHF alpha subunit [Prevotella oris F0302] gi|281400200|gb|EFB31031.1| putative integration host factor IHF alpha subunit [Prevotella oris F0302] Length = 421 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 D+ + + + GL D+ F+ + + I + R +KI TF + SR ++ Sbjct: 11 DIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVSSRESVDVN 70 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T + + I+ R + F + +K+ + Sbjct: 71 TGERIVIEGRDKISFTPDNAMKELV 95 >gi|260889031|ref|ZP_05900294.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] gi|260861091|gb|EEX75591.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] Length = 70 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 V + + + G++++ + TF VK++ +R G N QT +E+KI Sbjct: 1 MVNQFLETVEKTLLNGDSVQFVGWGTFEVKERAARTGINPQTKKEIKI 48 >gi|109947731|ref|YP_664959.1| histon like DNA-binding protein HU [Helicobacter acinonychis str. Sheeba] gi|109714952|emb|CAJ99960.1| histon like DNA-binding protein HU [Helicobacter acinonychis str. Sheeba] Length = 94 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLVK + EF S++++ + + + +GE++++ F F ++ + G+ Sbjct: 8 DLVKEVG-EFN-SKREAEEVINAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVPG 65 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 + + K +RV FKA ILK+++ Sbjct: 66 SGKTYKTKDKRVPKFKAGKILKQKV 90 >gi|116333199|ref|YP_794726.1| transcriptional accessory protein [Lactobacillus brevis ATCC 367] gi|116098546|gb|ABJ63695.1| Transcriptional accessory protein [Lactobacillus brevis ATCC 367] Length = 731 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 15/105 (14%) Query: 11 VKSISKEFGLSRKDSTRFVT------------TLFNEICDSAVRGEAIKISSFATFHVKQ 58 V+ I+ G + ++S FV+ L NE S A + FA FHV++ Sbjct: 384 VEMIAIGNGTASRESEEFVSQILKTLNRPVYYVLVNEAGASVYSASANARAEFADFHVEE 443 Query: 59 KGS-RVGRNLQT--NQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 + + +GR LQ + +KIDP+ V V + + K+ +D+ R Sbjct: 444 RSAVSIGRRLQDPLAELIKIDPKAVGVGQYQHDVPKKALDEQLDR 488 >gi|294673497|ref|YP_003574113.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294472549|gb|ADE81938.1| DNA-binding protein, HU family/extensin domain protein [Prevotella ruminicola 23] Length = 472 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I+ +L + + ++R+D++ FV+ +F+ + + +K+ TF + R Sbjct: 4 ISIQELANVLVERRKMNRRDASLFVSAMFDIVQQRLETDKLVKVKGLGTFKIIDVEDRES 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N+ T + V I+ + F ++LK+ + Sbjct: 64 VNVNTGERVLIEGHGKITFVPDALLKELV 92 >gi|297194088|ref|ZP_06911486.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197720925|gb|EDY64833.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 93 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|306521780|ref|ZP_07408127.1| DNA-binding protein HU [Clostridium difficile QCD-32g58] Length = 64 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV-KIDPRRVVVFKASSILK 90 + D+ V E +++ F TF +++ +R GRN + ++V I + VFKA LK Sbjct: 4 VQDALVNNEKVQLVGFGTFETRERAARQGRNPRDPEQVIDIPASKAPVFKAGKGLK 59 >gi|157737565|ref|YP_001490248.1| DNA-binding protein HU [Arcobacter butzleri RM4018] gi|157699419|gb|ABV67579.1| DNA-binding protein HU [Arcobacter butzleri RM4018] Length = 91 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KD+ V + + I ++ V+ E++ F TF + +R Sbjct: 1 MNKAEFIDAVATKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + T + V + V FK LK+ + Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAV 89 >gi|189466861|ref|ZP_03015646.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM 17393] gi|189435125|gb|EDV04110.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM 17393] Length = 169 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 KT+ L +I K +++ D + L E+ ++ V G +K++ F TFH+ Sbjct: 33 KTVDVDTLAAAIQKSCAMTKGDVKHVIEALVEEVQENLVNGNKVKLNLFGTFHM 86 >gi|254779192|ref|YP_003057297.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38] gi|308184622|ref|YP_003928755.1| DNA-binding protein HU [Helicobacter pylori SJM180] gi|254001103|emb|CAX29058.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38] gi|308060542|gb|ADO02438.1| DNA-binding protein HU [Helicobacter pylori SJM180] Length = 94 Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRVGRNL 67 DLVK K S K + F ++A+ +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGK---YSSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 65 GSDKTYKTEDKRVPKFKPGKILKQKVEE 92 >gi|150007590|ref|YP_001302333.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|301310444|ref|ZP_07216383.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149936014|gb|ABR42711.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|300832018|gb|EFK62649.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 96 Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 V + I + F F VK+K R+ N + + P+ V VFK + +K R+ Sbjct: 37 VDNDTIYLQGFGQFEVKKKAERISVNPANGKRYLVPPKLVPVFKPGTTVKNRL 89 >gi|153806287|ref|ZP_01958955.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185] gi|149130964|gb|EDM22170.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185] Length = 435 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >gi|39938803|ref|NP_950569.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39938843|ref|NP_950609.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721912|dbj|BAD04402.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721952|dbj|BAD04442.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K I++ S + F + ++ E + +S F +K + + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYHIFEKTLIEAITTNEEVVLSPQIGKFQLKPRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +++KI + VV FK S +K Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIK 87 >gi|296273437|ref|YP_003656068.1| histone family protein DNA-binding protein [Arcobacter nitrofigilis DSM 7299] gi|296097611|gb|ADG93561.1| histone family protein DNA-binding protein [Arcobacter nitrofigilis DSM 7299] Length = 91 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KD+ V ++ I ++ V+ E++ F TF + +R Sbjct: 1 MNKAEFIDAVATKAGLSKKDAKCAVDSVLETITETLVKNESVSFIGFGTFSTAARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + T++ V + V FK LK+ + Sbjct: 61 KVPGTDRTVDVKATTVAKFKVGKALKEAV 89 >gi|158522867|ref|YP_001530737.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158511693|gb|ABW68660.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 90 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 +T+++L+ ++ + +++ + + + + + + + E + + F TF + +R Sbjct: 1 MTKAELIDKMAADAKITKMAAGKALDAFMDGVTKALKKKEGKVTLVGFGTFAKAHRKART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN QT + +KI VV F+ K++ DD+ Sbjct: 61 GRNPQTGKPIKIKACNVVKFRPG----KKLRDDV 90 >gi|253578053|ref|ZP_04855325.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850371|gb|EES78329.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 209 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 41/87 (47%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+S ++ +++ L KD+ +F E+ G IK F TF + +R Sbjct: 113 RTLTQSAFIRRLARSNDLQIKDADIITKQVFRELISCLKDGFCIKFEGFGTFGTYTRKAR 172 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 ++ T + I + VV FK S+ L Sbjct: 173 SVKHPVTQERCTIKEKAVVKFKPSAKL 199 >gi|148259522|ref|YP_001233649.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|326402729|ref|YP_004282810.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] gi|146401203|gb|ABQ29730.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|325049590|dbj|BAJ79928.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] Length = 89 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 38/80 (47%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I G++ + R T + I + + SF TF V++ +R G N ++ + + Sbjct: 10 IQNSTGITGVAANRAATDVIEAIVKELKKKGKFTLPSFGTFTVRKTKARKGVNPRSGEPI 69 Query: 74 KIDPRRVVVFKASSILKKRI 93 K+ + V FK+S LK R+ Sbjct: 70 KVKAGKTVRFKSSPTLKTRV 89 >gi|254389768|ref|ZP_05004992.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294812896|ref|ZP_06771539.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] gi|326441327|ref|ZP_08216061.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] gi|197703479|gb|EDY49291.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294325495|gb|EFG07138.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] Length = 93 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKE 88 >gi|15892135|ref|NP_359849.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7] gi|15619264|gb|AAL02750.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7] Length = 139 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ ++ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 65 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 124 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 125 QPTFRAGRKMKE 136 >gi|268316438|ref|YP_003290157.1| histone family protein DNA-binding protein [Rhodothermus marinus DSM 4252] gi|262333972|gb|ACY47769.1| histone family protein DNA-binding protein [Rhodothermus marinus DSM 4252] Length = 131 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFN------EICDSAVRGEAIKISSFATFHVK 57 T+T+ D+ + +++ G S +V + E D VR I++ F F VK Sbjct: 7 TLTKKDVARRVAQLMGEPIYKSEPWVNAVIEALAQLLEEADPEVR---IELRDFGVFEVK 63 Query: 58 QKGSRV-GRNLQTNQEVKIDPRRVVVFKASSILKK 91 + ++ RN +TN+ V I RR FK S LK+ Sbjct: 64 RTRAKPKARNPKTNETVFIPSRRKTHFKPSKRLKQ 98 >gi|239918394|ref|YP_002957952.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC 2665] gi|289707035|ref|ZP_06503366.1| DNA-binding protein HU [Micrococcus luteus SK58] gi|239839601|gb|ACS31398.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC 2665] gi|289556221|gb|EFD49581.1| DNA-binding protein HU [Micrococcus luteus SK58] Length = 93 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 39/86 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV ++++ G ++ + + LF +GE + I + ++ R G Sbjct: 3 MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERTG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I V A S LK Sbjct: 63 RNPRTGEEITIPAGHSVKVTAGSKLK 88 >gi|165932789|ref|YP_001649578.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa] gi|165907876|gb|ABY72172.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa] Length = 139 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ ++ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 65 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 124 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 125 QPTFRAGRKMKE 136 >gi|157964238|ref|YP_001499062.1| DNA-binding protein HU [Rickettsia massiliae MTU5] gi|157844014|gb|ABV84515.1| DNA-binding protein HU [Rickettsia massiliae MTU5] Length = 139 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 37/72 (51%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ ++ + + + + + + I I+ F +F + + +R GRN +T ++KID Sbjct: 65 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 124 Query: 80 VVVFKASSILKK 91 F+A +K+ Sbjct: 125 QPTFRAGRKMKE 136 >gi|88606926|ref|YP_505361.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ] gi|88597989|gb|ABD43459.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ] Length = 91 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK I +V+++ G ++KDS+ + + I + +I++ + T HV Q Sbjct: 1 MSKEI----IVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCA 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 + N +T + P+R V F++S Sbjct: 57 EKKYHNPKTGHLETLPPKRRVRFRSS 82 >gi|256379997|ref|YP_003103657.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] gi|255924300|gb|ACU39811.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] Length = 285 Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++++++ G +K++ V + + I S +GE + I+ F F + + +R Sbjct: 1 MNKAQLIEALAERLG-DKKNAAAAVDGIVDVIVRSVHKGEKVNITGFGVFEKRARAARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T + VK+ V F+A S K Sbjct: 60 RNPRTGETVKVKKTNVPAFRAGSTFK 85 >gi|281415410|ref|ZP_06247152.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC 2665] Length = 91 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 39/86 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV ++++ G ++ + + LF +GE + I + ++ R G Sbjct: 1 MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN +T +E+ I V A S LK Sbjct: 61 RNPRTGEEITIPAGHSVKVTAGSKLK 86 >gi|281419889|ref|ZP_06250888.1| putative integration host factor IHF alpha subunit [Prevotella copri DSM 18205] gi|281406016|gb|EFB36696.1| putative integration host factor IHF alpha subunit [Prevotella copri DSM 18205] Length = 479 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQK 59 MSK + + L K ++ + GLS+ ++ F+ +F ++C+ + + +KI TF V+ Sbjct: 1 MSK-FSLNTLGKLLADKSGLSQVEAELFIRKMF-DVCNQGLDADKQVKIKWLGTFKVQAT 58 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 R N+ T + I+ R + F +ILK+ Sbjct: 59 KDRESINVNTGERFTIEGRDKLTFTPDNILKE 90 >gi|3641282|gb|AAC36331.1| histone-like protein [Caulobacter crescentus CB15] Length = 92 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/88 (20%), Positives = 41/88 (46%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + DS G+ +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + V F+ LK + Sbjct: 63 NPRTGETVNRPASNTARFQVGEGLKSSL 90 >gi|315586499|gb|ADU40880.1| DNA-binding protein HU [Helicobacter pylori 35A] Length = 94 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLVK K S++++ ++ + + +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGKY--NSKREAEEAISAFILAVETALSKGESVELVGFGKFETAEQKGKEGKVPG 65 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FK ILK+++ + Sbjct: 66 SDKTYKTEDKRVPKFKPGKILKQKVEE 92 >gi|254446217|ref|ZP_05059693.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] gi|198260525|gb|EDY84833.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] Length = 104 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 45 AIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 AI++ F TF V ++ +R G N T + +KI + V FKA + LK ++ Sbjct: 56 AIQLVGFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKDQL 104 >gi|167646806|ref|YP_001684469.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167349236|gb|ABZ71971.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/85 (21%), Positives = 41/85 (48%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + + S GE +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIDAVTTSLKAGEDVRLVGFGTFKAVARAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N +T + V + F+ LK Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLK 87 >gi|39938888|ref|NP_950654.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721997|dbj|BAD04487.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63 +T+ +L+K I++ S + F + ++ E + +S F +K + + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYNIFEKTLIEAITTNEEVVLSPQIGKFKLKSRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++KI + VV FK S +K ++ Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKNIKDQV 90 >gi|241518439|ref|YP_002979067.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862852|gb|ACS60516.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 92 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 19/85 (22%), Positives = 35/85 (41%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + L++ V + I +A+ G + F F VK R R Sbjct: 3 TTNEIADKIAGDHSLTKAQGKAIVEAVIASITQAAMDGNETSLPGFGKFKVKATPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N T +K+ + + F + LK Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALK 87 >gi|328882764|emb|CCA56003.1| Non-specific DNA-binding protein HBsu [Streptomyces venezuelae ATCC 10712] Length = 93 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + I V A S LK+ Sbjct: 61 ARNPQTGDPIDIPAGYSVKVSAGSKLKE 88 >gi|255009411|ref|ZP_05281537.1| putative integration host factor IHF alpha subunit [Bacteroides fragilis 3_1_12] gi|313147170|ref|ZP_07809363.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135937|gb|EFR53297.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 467 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 37/76 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T +LV + G+ +KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQNLVDLLVSRHGVPQKDADVFVREFFLLIEQALENDQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKID 76 SR N+ T + +KI+ Sbjct: 61 SRESVNINTGERIKIE 76 >gi|86608376|ref|YP_477138.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556918|gb|ABD01875.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)] Length = 101 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTT----LFNEICDSAVRGEA---IKISSFATFHVK 57 + +++LV +++ +++K++ ++ + E+ GE + + F +F + Sbjct: 1 MNKAELVDAVAHRANVTKKEAEAVISAALEIIVEEVASRDENGEPKGKVILVGFGSFEAR 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 ++ R GRN +TNQ++ I R V F A Sbjct: 61 KRKEREGRNPKTNQKMVIPERIVPTFAAG 89 >gi|39938549|ref|NP_950315.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721658|dbj|BAD04148.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K ++ S + F N + + E + +S F +K + + + Sbjct: 1 MTKKELIKKTAEVNKTSISKTEEFYHIFENTLIKAITTNEEVVLSPQIGKFQLKPRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +++KI + VV FK S +K Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIK 87 >gi|317014245|gb|ADU81681.1| DNA-binding protein HU [Helicobacter pylori Gambia94/24] Length = 96 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRVGRNL 67 DLVK K + K F ++A+ +GE++++ F F ++ + G+ Sbjct: 8 DLVKEAGK---YNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKEGKVP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +++ K + +RV FK ILK+++ + R Sbjct: 65 GSDKTYKTEDKRVPKFKPGKILKQKVEEGKR 95 >gi|222475030|ref|YP_002563445.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Florida] gi|254994876|ref|ZP_05277066.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Mississippi] gi|255003010|ref|ZP_05277974.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Puerto Rico] gi|255004136|ref|ZP_05278937.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Virginia] gi|269958917|ref|YP_003328706.1| DNA-binding protein HU [Anaplasma centrale str. Israel] gi|222419166|gb|ACM49189.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Florida] gi|269848748|gb|ACZ49392.1| DNA-binding protein HU [Anaplasma centrale str. Israel] Length = 91 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK I +V+++ G ++KDS+ + + + + +I++ + T HV Q Sbjct: 1 MSKEI----IVRALMSNLGFTKKDSSSAYDVVMSAVKTALETNHSIRLHNVGTLHVIQCA 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 + N +T + + P+R V F++S Sbjct: 57 EKKYHNPKTGRLETLPPKRRVRFRSS 82 >gi|298385402|ref|ZP_06994960.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|298261543|gb|EFI04409.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 91 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 39/85 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++V+ + +SR + + V +F+ I +S RGE++ I FAT + RN+ Sbjct: 5 EIVEHVINNTTISRSQAIQAVDCVFDAIENSLCRGESVYIRGFATIKAHTSKRKKARNIS 64 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 V I +R S LK R+ Sbjct: 65 KGTTVVIPAQRSAKLIISKQLKARM 89 >gi|182438375|ref|YP_001826094.1| putative DNA-binding protein HU 1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|239941634|ref|ZP_04693571.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL 15998] gi|239988096|ref|ZP_04708760.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL 11379] gi|282865174|ref|ZP_06274227.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] gi|291445076|ref|ZP_06584466.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998] gi|326779026|ref|ZP_08238291.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] gi|178466891|dbj|BAG21411.1| putative DNA-binding protein Hu 1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|282560097|gb|EFB65646.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] gi|291348023|gb|EFE74927.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998] gi|320010510|gb|ADW05360.1| histone family protein DNA-binding protein [Streptomyces flavogriseus ATCC 33331] gi|326659359|gb|EGE44205.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] Length = 93 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + I V A S LK+ Sbjct: 61 ARNPQTGDPINIPAGYSVKVSAGSKLKE 88 >gi|317011056|gb|ADU84803.1| DNA-binding protein HU [Helicobacter pylori SouthAfrica7] Length = 94 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFH-VKQKGSRVGRN 66 DLVK K + K F ++A+ +GE++++ F F V+QKG + G+ Sbjct: 8 DLVKEAGK---YNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETVEQKG-KEGKV 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ K + +RV FKA ILK+++ + Sbjct: 64 PGSDKTYKTEDKRVPKFKAGKILKQKVEE 92 >gi|288927532|ref|ZP_06421379.1| integration host factor IHF alpha subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288330366|gb|EFC68950.1| integration host factor IHF alpha subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 638 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 42/90 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + +L ++ + LS K++ FV T+F+ + + +K+ TF V Sbjct: 5 MNNRVGIRELAMALVNKNKLSLKEAENFVATMFDTLNVGLNDDKQVKLKGLGTFKVMSVS 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 +R ++ T + + ID R + F S +K Sbjct: 65 ARKSVDVNTGEPIIIDGRDKISFTPDSTMK 94 >gi|14195649|sp|Q9ZDZ2|DBH_RICPR RecName: Full=DNA-binding protein HU Length = 99 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 35/72 (48%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 L++ D+ + + + + + + ++ F +F + + R GRN +T ++KID Sbjct: 25 LTKADAEKALNLVIESVISAIKSKHNVNLTGFGSFEIHHRKEREGRNPKTGAKMKIDAYN 84 Query: 80 VVVFKASSILKK 91 F+A LK+ Sbjct: 85 QPTFRAGRKLKE 96 Searching..................................................done Results from round 2 >gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter asiaticus str. psy62] gi|254040173|gb|ACT56969.1| integration host factor subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 114 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG Sbjct: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY Sbjct: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 >gi|212638931|ref|YP_002315451.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus flavithermus WK1] gi|212560411|gb|ACJ33466.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus flavithermus WK1] Length = 101 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+++ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 12 MNKTELINAVAEASGLSKKDASKAVDAVFDAITEALKNGDKVQLIGFGNFEVRERAARKG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 72 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 101 >gi|315658244|ref|ZP_07911116.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590] gi|315496573|gb|EFU84896.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590] Length = 105 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K + V +F I S +GE +++ F F V+++ +R G Sbjct: 16 MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 75 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 76 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 105 >gi|30019658|ref|NP_831289.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|75764066|ref|ZP_00743668.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|29895202|gb|AAP08490.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|74488445|gb|EAO52059.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 25 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 84 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 85 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 114 >gi|118477063|ref|YP_894214.1| DNA-binding protein HU [Bacillus thuringiensis str. Al Hakam] gi|118416288|gb|ABK84707.1| bacterial nucleoid protein Hbs [Bacillus thuringiensis str. Al Hakam] Length = 117 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 28 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 88 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 117 >gi|227535136|ref|ZP_03965185.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187181|gb|EEI67248.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 129 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GR Sbjct: 41 NKAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 100 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 101 NPQTGAEIKIPASKVPAFKPGKALKDAVK 129 >gi|65318875|ref|ZP_00391834.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis str. A2012] gi|228938721|ref|ZP_04101325.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951986|ref|ZP_04114083.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957885|ref|ZP_04119625.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228978213|ref|ZP_04138590.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228984688|ref|ZP_04144861.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229043354|ref|ZP_04191072.1| DNA-binding protein HU [Bacillus cereus AH676] gi|229078792|ref|ZP_04211345.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|229096101|ref|ZP_04227074.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|229102213|ref|ZP_04232922.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|229109065|ref|ZP_04238665.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|229115057|ref|ZP_04244467.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|229144208|ref|ZP_04272622.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|229149807|ref|ZP_04278036.1| DNA-binding protein HU [Bacillus cereus m1550] gi|229178017|ref|ZP_04305389.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|229183804|ref|ZP_04311021.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|228599653|gb|EEK57256.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|228605505|gb|EEK62954.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|228633671|gb|EEK90271.1| DNA-binding protein HU [Bacillus cereus m1550] gi|228639216|gb|EEK95632.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|228668197|gb|EEL23629.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228674343|gb|EEL29587.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|228681114|gb|EEL35282.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|228687061|gb|EEL40966.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|228704474|gb|EEL56907.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228726002|gb|EEL77241.1| DNA-binding protein HU [Bacillus cereus AH676] gi|228775082|gb|EEM23475.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781230|gb|EEM29431.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228801801|gb|EEM48678.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807711|gb|EEM54233.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820962|gb|EEM66983.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 104 Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 15 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 74 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 75 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 104 >gi|317128573|ref|YP_004094855.1| histone family protein DNA-binding protein [Bacillus cellulosilyticus DSM 2522] gi|315473521|gb|ADU30124.1| histone family protein DNA-binding protein [Bacillus cellulosilyticus DSM 2522] Length = 90 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+T V +F+ I S GE +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEKSDLSKKDATSAVDAVFDVITGSLQNGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FK LK + Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAVK 90 >gi|297584429|ref|YP_003700209.1| histone family protein DNA-binding protein [Bacillus selenitireducens MLS10] gi|297142886|gb|ADH99643.1| histone family protein DNA-binding protein [Bacillus selenitireducens MLS10] Length = 90 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T V +F I DS +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAESADLSKKDATSAVDAVFEVITDSLKKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FK LK + Sbjct: 61 RNPQTGEEIEIPASNVPAFKPGKALKDAVK 90 >gi|31789462|gb|AAP58576.1| putative DNA-binding protein [uncultured Acidobacteria bacterium] Length = 116 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 61/109 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ +++ L++KD+ R V +F I ++ +GE I++ F +F V+++G+R G Sbjct: 1 MTKAELVEDVAEAAELTKKDAERLVEIVFESIIETLNQGEKIELRGFGSFRVRERGARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN +T V I +RV FK LK+ I + + + + S Sbjct: 61 RNPKTGDPVSIPAKRVPYFKPGKELKELINNSSHPHRSSDSTTGASSDE 109 >gi|56420750|ref|YP_148068.1| DNA-binding protein HU [Geobacillus kaustophilus HTA426] gi|138895793|ref|YP_001126246.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2] gi|196248675|ref|ZP_03147375.1| histone family protein DNA-binding protein [Geobacillus sp. G11MC16] gi|261417947|ref|YP_003251629.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC61] gi|297529615|ref|YP_003670890.1| histone family protein DNA-binding protein [Geobacillus sp. C56-T3] gi|319767241|ref|YP_004132742.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC52] gi|61222554|sp|P0A3H0|DBH_BACST RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|61222555|sp|P0A3H1|DBH_BACCL RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|61222556|sp|P0A3H2|DBH_BACCA RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|1311345|pdb|1HUE|A Chain A, Histone-Like Protein gi|1311346|pdb|1HUE|B Chain B, Histone-Like Protein gi|4389195|pdb|1HUU|A Chain A, Dna-Binding Protein Hu From Bacillus Stearothermophilus gi|4389196|pdb|1HUU|B Chain B, Dna-Binding Protein Hu From Bacillus Stearothermophilus gi|4389197|pdb|1HUU|C Chain C, Dna-Binding Protein Hu From Bacillus Stearothermophilus gi|143065|gb|AAA22532.1| hubst [Geobacillus stearothermophilus] gi|143067|gb|AAA22533.1| hubcalx [Bacillus caldotenax] gi|143069|gb|AAA22534.1| hubcald [Bacillus caldolyticus] gi|1065992|dbj|BAA07273.1| DNA binding protein HU [Geobacillus stearothermophilus] gi|56380592|dbj|BAD76500.1| DNA-binding protein HU (DNA-binding protein II) [Geobacillus kaustophilus HTA426] gi|134267306|gb|ABO67501.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2] gi|196211551|gb|EDY06310.1| histone family protein DNA-binding protein [Geobacillus sp. G11MC16] gi|261374404|gb|ACX77147.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC61] gi|297252867|gb|ADI26313.1| histone family protein DNA-binding protein [Geobacillus sp. C56-T3] gi|317112107|gb|ADU94599.1| histone family protein DNA-binding protein [Geobacillus sp. Y412MC52] Length = 90 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALKDAVK 90 >gi|239827506|ref|YP_002950130.1| histone family protein DNA-binding protein [Geobacillus sp. WCH70] gi|239807799|gb|ACS24864.1| histone family protein DNA-binding protein [Geobacillus sp. WCH70] Length = 90 Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ GLS+KD+T+ V +F I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAETSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALKDAVK 90 >gi|251796413|ref|YP_003011144.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] gi|247544039|gb|ACT01058.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] Length = 103 Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 54/93 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +++ LS+KD+T+ V +F I D+ G+ +++ F F V+++ +R Sbjct: 11 KQMNKTDLINKVAELSDLSKKDATKAVDAVFEAISDALQSGDKVQLVGFGNFEVRERQAR 70 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +E+ I ++ FK LK + + Sbjct: 71 KGRNPQTGEEIDIAASKMPAFKPGKSLKDLVSN 103 >gi|229552183|ref|ZP_04440908.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus LMS2-1] gi|229314485|gb|EEN80458.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus LMS2-1] Length = 104 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GR Sbjct: 16 NKAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 75 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 76 NPQTGAEIKIPASKVPAFKPGKALKDAVK 104 >gi|288555641|ref|YP_003427576.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus pseudofirmus OF4] gi|288546801|gb|ADC50684.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus pseudofirmus OF4] Length = 90 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S+S++ LS+KD+++ V +F+ I ++ V G +++ F +F V+++ +R G Sbjct: 1 MNKTDLINSVSEQADLSKKDASKAVDAVFDSITNALVEGGKVQLVGFGSFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE++I + FK LK + Sbjct: 61 RNPQTGQEIEIPATKNPAFKPGKQLKDAVN 90 >gi|207999|gb|AAA72912.1| HBsu protein [synthetic construct] Length = 98 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R G Sbjct: 7 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 66 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V FK LK + Sbjct: 67 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 97 >gi|152980190|ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp. Marseille] gi|151280267|gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp. Marseille] Length = 165 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 61/96 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL+++++ V T F+EI ++ RGE++K+S F F ++ K R Sbjct: 63 PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLRDKPQR 122 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV F AS LK + D + Sbjct: 123 PGRNPKTGEEIPITARRVVTFHASQKLKGMVEDSSQ 158 >gi|16079336|ref|NP_390160.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. 168] gi|154686527|ref|YP_001421688.1| hypothetical protein RBAM_020950 [Bacillus amyloliquefaciens FZB42] gi|221310195|ref|ZP_03592042.1| hypothetical protein Bsubs1_12521 [Bacillus subtilis subsp. subtilis str. 168] gi|221314518|ref|ZP_03596323.1| hypothetical protein BsubsN3_12437 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319440|ref|ZP_03600734.1| hypothetical protein BsubsJ_12363 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323716|ref|ZP_03605010.1| hypothetical protein BsubsS_12492 [Bacillus subtilis subsp. subtilis str. SMY] gi|296332983|ref|ZP_06875440.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674913|ref|YP_003866585.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. spizizenii str. W23] gi|308174071|ref|YP_003920776.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens DSM 7] gi|311068794|ref|YP_003973717.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus atrophaeus 1942] gi|321311749|ref|YP_004204036.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis BSn5] gi|118263|sp|P08821|DBH1_BACSU RecName: Full=DNA-binding protein HU 1; AltName: Full=DNA-binding protein II; AltName: Full=HB gi|39936|emb|CAA36669.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. JH642] gi|39938|emb|CAA47064.1| hbsu [Bacillus subtilis] gi|143071|gb|AAA22535.1| hubgl [Bacillus subtilis] gi|143073|gb|AAA22536.1| hubsub [Bacillus subtilis] gi|2634697|emb|CAB14195.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. subtilis str. 168] gi|154352378|gb|ABS74457.1| HupA [Bacillus amyloliquefaciens FZB42] gi|291484703|dbj|BAI85778.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. natto BEST195] gi|296149834|gb|EFG90726.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413157|gb|ADM38276.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis subsp. spizizenii str. W23] gi|307606935|emb|CBI43306.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens DSM 7] gi|310869311|gb|ADP32786.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus atrophaeus 1942] gi|320018023|gb|ADV93009.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus subtilis BSn5] gi|328552803|gb|AEB23295.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus amyloliquefaciens TA208] gi|328912401|gb|AEB63997.1| DNA-binding protein HU 1 [Bacillus amyloliquefaciens LL3] gi|383705|prf||1904151A DNA-binding protein HBsu Length = 92 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 91 >gi|52080788|ref|YP_079579.1| non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component [Bacillus licheniformis ATCC 14580] gi|52786158|ref|YP_091987.1| Hbs [Bacillus licheniformis ATCC 14580] gi|319645255|ref|ZP_07999488.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] gi|52003999|gb|AAU23941.1| non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component [Bacillus licheniformis ATCC 14580] gi|52348660|gb|AAU41294.1| Hbs [Bacillus licheniformis ATCC 14580] gi|317393064|gb|EFV73858.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] Length = 92 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ GE I++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGEKIQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 91 >gi|295398952|ref|ZP_06808934.1| histone family protein DNA-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110441|ref|YP_003988757.1| histone family protein DNA-binding protein [Geobacillus sp. Y4.1MC1] gi|294978418|gb|EFG54014.1| histone family protein DNA-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215542|gb|ADP74146.1| histone family protein DNA-binding protein [Geobacillus sp. Y4.1MC1] gi|227370|prf||1702428A DNA binding protein HU Length = 90 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+T+ V +F I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINTVAEISGLSKKDATKAVDAVFESITEALKKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEMEIPASKVPAFKPGKALKDAVK 90 >gi|15613872|ref|NP_242175.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] gi|14194649|sp|Q9KDA5|DBH1_BACHD RecName: Full=DNA-binding protein HU-1 gi|10173925|dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] Length = 90 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ LS+KD+++ V +F I + G +++ F +F V+++ +R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FK LK + Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90 >gi|311030279|ref|ZP_07708369.1| DNA-binding protein HU [Bacillus sp. m3-13] Length = 90 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEASELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90 >gi|149183707|ref|ZP_01862118.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. SG-1] gi|148848589|gb|EDL62828.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. SG-1] Length = 90 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEAAELSKKDATKAVDAVFESIQDALANGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEISASKVPAFKPGKALKDAVK 90 >gi|228900190|ref|ZP_04064422.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|228907242|ref|ZP_04071102.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228914185|ref|ZP_04077801.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926640|ref|ZP_04089709.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945209|ref|ZP_04107565.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228964584|ref|ZP_04125693.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228971603|ref|ZP_04132226.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228990624|ref|ZP_04150589.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228996722|ref|ZP_04156359.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|229004383|ref|ZP_04162146.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|229010917|ref|ZP_04168113.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|229016866|ref|ZP_04173794.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|229023072|ref|ZP_04179586.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|229058245|ref|ZP_04196633.1| DNA-binding protein HU [Bacillus cereus AH603] gi|229069162|ref|ZP_04202453.1| DNA-binding protein HU [Bacillus cereus F65185] gi|229084613|ref|ZP_04216882.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|229090571|ref|ZP_04221806.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|229121152|ref|ZP_04250389.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|229126923|ref|ZP_04255934.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|229132417|ref|ZP_04261271.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|229138303|ref|ZP_04266898.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|229155175|ref|ZP_04283287.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|229160560|ref|ZP_04288555.1| DNA-binding protein HU [Bacillus cereus R309803] gi|229172247|ref|ZP_04299811.1| DNA-binding protein HU [Bacillus cereus MM3] gi|229189691|ref|ZP_04316705.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|229195810|ref|ZP_04322570.1| DNA-binding protein HU [Bacillus cereus m1293] gi|228587707|gb|EEK45765.1| DNA-binding protein HU [Bacillus cereus m1293] gi|228593740|gb|EEK51545.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228611235|gb|EEK68493.1| DNA-binding protein HU [Bacillus cereus MM3] gi|228622970|gb|EEK79801.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228628302|gb|EEK85017.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|228645195|gb|EEL01432.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|228651123|gb|EEL07104.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|228656523|gb|EEL12350.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|228662271|gb|EEL17874.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|228692774|gb|EEL46498.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|228698689|gb|EEL51405.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|228713914|gb|EEL65798.1| DNA-binding protein HU [Bacillus cereus F65185] gi|228720109|gb|EEL71693.1| DNA-binding protein HU [Bacillus cereus AH603] gi|228738218|gb|EEL88700.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|228744427|gb|EEL94501.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|228750317|gb|EEM00147.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|228756868|gb|EEM06150.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228763041|gb|EEM11951.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|228769150|gb|EEM17748.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228788126|gb|EEM36082.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795118|gb|EEM42615.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228814444|gb|EEM60709.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833016|gb|EEM78584.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845389|gb|EEM90424.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852382|gb|EEM97176.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228859460|gb|EEN03888.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 93 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 4 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 64 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 93 >gi|227890888|ref|ZP_04008693.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius ATCC 11741] gi|227867297|gb|EEJ74718.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius ATCC 11741] Length = 100 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++ ++++ GL++KD+T V +F I D+ V GE +++ F F V+++ +R GR Sbjct: 12 NKAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGR 71 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 72 NPQTGEEIEIPASKVPAFKPGKSLKDAVK 100 >gi|23099247|ref|NP_692713.1| non-specific DNA-binding protein [Oceanobacillus iheyensis HTE831] gi|22777476|dbj|BAC13748.1| non-specific DNA-binding protein [Oceanobacillus iheyensis HTE831] Length = 90 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ LS+KD+T+ V +F + DS GE +++ F F V+++ +R G Sbjct: 1 MNKTDLVNAVAEKSELSKKDATKAVDAVFESVMDSLKNGEKVQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDSVK 90 >gi|261406040|ref|YP_003242281.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|315646418|ref|ZP_07899536.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] gi|329929885|ref|ZP_08283561.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5] gi|261282503|gb|ACX64474.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|315278061|gb|EFU41381.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] gi|328935863|gb|EGG32324.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5] Length = 90 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ LS+KD+T+ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKSDLITQVAESTELSKKDATKAVDAVFDAISEALQSGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I ++ FK LK I Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 90 >gi|253576405|ref|ZP_04853735.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844298|gb|EES72316.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 90 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ LS+KD+T+ V +F+ I + G+ +++ F F V+++ +R G Sbjct: 1 MNKSDLIAQVAESTELSKKDATKAVDAVFDAISTALQNGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I ++ FK LK I Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 90 >gi|229543995|ref|ZP_04433054.1| histone family protein DNA-binding protein [Bacillus coagulans 36D1] gi|229325134|gb|EEN90810.1| histone family protein DNA-binding protein [Bacillus coagulans 36D1] Length = 90 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEATELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FK LK + Sbjct: 61 RNPQTGEEIDIAASKVPAFKPGKALKDAVK 90 >gi|157692778|ref|YP_001487240.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032] gi|194016903|ref|ZP_03055516.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus pumilus ATCC 7061] gi|157681536|gb|ABV62680.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032] gi|194011509|gb|EDW21078.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus pumilus ATCC 7061] Length = 92 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAVAG 91 >gi|160900157|ref|YP_001565739.1| integration host factor subunit beta [Delftia acidovorans SPH-1] gi|160365741|gb|ABX37354.1| integration host factor, beta subunit [Delftia acidovorans SPH-1] Length = 113 Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 65/110 (59%), Gaps = 2/110 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG LS++D+ + V T+ + + D+ VRG I+I F +F V + R+ Sbjct: 1 MTRSDLVEELAARFGQLSQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFSVNHRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ + V I +RV FK L++ + D G + D+ S +GS Sbjct: 61 GRNPRSGEAVHIPSKRVPHFKPGKALREAV-DLRPGVAIDTDNTGSGTGS 109 >gi|70726439|ref|YP_253353.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435] gi|68447163|dbj|BAE04747.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435] Length = 90 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQQSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 90 >gi|30261605|ref|NP_843982.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42780711|ref|NP_977958.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47526805|ref|YP_018154.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|49184437|ref|YP_027689.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49481024|ref|YP_035726.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143837|ref|YP_082990.1| DNA-binding protein HU [Bacillus cereus E33L] gi|152975033|ref|YP_001374550.1| histone family protein DNA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|163939425|ref|YP_001644309.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|165869502|ref|ZP_02214161.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167633255|ref|ZP_02391580.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|167639174|ref|ZP_02397447.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|170686317|ref|ZP_02877539.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|170706435|ref|ZP_02896895.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|177650638|ref|ZP_02933605.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190568652|ref|ZP_03021557.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|196033321|ref|ZP_03100733.1| DNA-binding protein HU [Bacillus cereus W] gi|196039102|ref|ZP_03106409.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|196046571|ref|ZP_03113795.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|206970635|ref|ZP_03231587.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|206975002|ref|ZP_03235917.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217959087|ref|YP_002337635.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218233805|ref|YP_002366291.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218896539|ref|YP_002444950.1| DNA-binding protein HU [Bacillus cereus G9842] gi|218902721|ref|YP_002450555.1| DNA-binding protein HU [Bacillus cereus AH820] gi|222095239|ref|YP_002529299.1| DNA-binding protein hu [Bacillus cereus Q1] gi|225863473|ref|YP_002748851.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227815643|ref|YP_002815652.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228920320|ref|ZP_04083667.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228932897|ref|ZP_04095763.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229029289|ref|ZP_04185379.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|229166456|ref|ZP_04294212.1| DNA-binding protein HU [Bacillus cereus AH621] gi|229601774|ref|YP_002866013.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|254683097|ref|ZP_05146958.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066] gi|254723685|ref|ZP_05185471.1| DNA-binding protein HU [Bacillus anthracis str. A1055] gi|254734446|ref|ZP_05192158.1| DNA-binding protein HU [Bacillus anthracis str. Western North America USA6153] gi|254740857|ref|ZP_05198545.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B] gi|254755095|ref|ZP_05207129.1| DNA-binding protein HU [Bacillus anthracis str. Vollum] gi|254759632|ref|ZP_05211656.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94] gi|296502179|ref|YP_003663879.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|300117462|ref|ZP_07055252.1| DNA-binding protein HU [Bacillus cereus SJ1] gi|301053147|ref|YP_003791358.1| DNA-binding protein HU [Bacillus anthracis CI] gi|30255459|gb|AAP25468.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42736631|gb|AAS40566.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47501953|gb|AAT30629.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|49178364|gb|AAT53740.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49332580|gb|AAT63226.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977306|gb|AAU18856.1| DNA-binding protein HU [Bacillus cereus E33L] gi|152023785|gb|ABS21555.1| histone family protein DNA-binding protein [Bacillus cytotoxicus NVH 391-98] gi|163861622|gb|ABY42681.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|164714942|gb|EDR20460.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167512964|gb|EDR88337.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|167531293|gb|EDR93971.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|170128533|gb|EDS97400.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|170670014|gb|EDT20755.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|172083782|gb|EDT68842.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190560252|gb|EDV14232.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|195993755|gb|EDX57711.1| DNA-binding protein HU [Bacillus cereus W] gi|196022504|gb|EDX61187.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|196030247|gb|EDX68847.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|206734271|gb|EDZ51441.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|206747021|gb|EDZ58413.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217064829|gb|ACJ79079.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218161762|gb|ACK61754.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218539449|gb|ACK91847.1| DNA-binding protein HU [Bacillus cereus AH820] gi|218542908|gb|ACK95302.1| DNA-binding protein HU [Bacillus cereus G9842] gi|221239297|gb|ACM12007.1| DNA-binding protein HU [Bacillus cereus Q1] gi|225788998|gb|ACO29215.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227005725|gb|ACP15468.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228617030|gb|EEK74099.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228732037|gb|EEL82929.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|228826763|gb|EEM72531.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228839343|gb|EEM84637.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229266182|gb|ACQ47819.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|296323231|gb|ADH06159.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|298725297|gb|EFI65949.1| DNA-binding protein HU [Bacillus cereus SJ1] gi|300375316|gb|ADK04220.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI] gi|324325626|gb|ADY20886.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus YBT-020] gi|326939227|gb|AEA15123.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90 >gi|205373831|ref|ZP_03226633.1| hypothetical protein Bcoam_11505 [Bacillus coahuilensis m4-4] Length = 90 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEATELSKKDATKAVDAVFESIQNALANGDKVQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90 >gi|15924463|ref|NP_371997.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50] gi|15927054|ref|NP_374587.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315] gi|21283091|ref|NP_646179.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2] gi|27468078|ref|NP_764715.1| DNA-binding protein II [Staphylococcus epidermidis ATCC 12228] gi|49483660|ref|YP_040884.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA252] gi|49486312|ref|YP_043533.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MSSA476] gi|57650428|ref|YP_186357.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL] gi|57866986|ref|YP_188618.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A] gi|82751070|ref|YP_416811.1| DNA-binding protein II [Staphylococcus aureus RF122] gi|87160505|ref|YP_494059.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195207|ref|YP_500008.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267957|ref|YP_001246900.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus JH9] gi|150394021|ref|YP_001316696.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|151221594|ref|YP_001332416.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. Newman] gi|156979792|ref|YP_001442051.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3] gi|161509640|ref|YP_001575299.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140960|ref|ZP_03565453.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. JKD6009] gi|239636854|ref|ZP_04677853.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603] gi|242242752|ref|ZP_04797197.1| DNA-binding protein II [Staphylococcus epidermidis W23144] gi|242373780|ref|ZP_04819354.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1] gi|251810895|ref|ZP_04825368.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060] gi|253315980|ref|ZP_04839193.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732115|ref|ZP_04866280.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733280|ref|ZP_04867445.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus TCH130] gi|255006259|ref|ZP_05144860.2| DNA-binding protein HU [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425537|ref|ZP_05601962.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428196|ref|ZP_05604594.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus 65-1322] gi|257430826|ref|ZP_05607208.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433585|ref|ZP_05609943.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257436426|ref|ZP_05612473.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876] gi|257795472|ref|ZP_05644451.1| DNA-binding protein HU [Staphylococcus aureus A9781] gi|258413280|ref|ZP_05681556.1| DNA-binding protein HU [Staphylococcus aureus A9763] gi|258420613|ref|ZP_05683555.1| DNA-binding protein II [Staphylococcus aureus A9719] gi|258422496|ref|ZP_05685404.1| DNA-binding protein II [Staphylococcus aureus A9635] gi|258426808|ref|ZP_05688028.1| DNA-binding protein HU [Staphylococcus aureus A9299] gi|258444806|ref|ZP_05693135.1| DNA-binding protein II [Staphylococcus aureus A8115] gi|258447360|ref|ZP_05695504.1| DNA-binding protein HU [Staphylococcus aureus A6300] gi|258449755|ref|ZP_05697856.1| DNA-binding protein II [Staphylococcus aureus A6224] gi|258451131|ref|ZP_05699166.1| DNA-binding protein HU [Staphylococcus aureus A5948] gi|258454575|ref|ZP_05702539.1| histone family protein DNA-binding protein [Staphylococcus aureus A5937] gi|262048995|ref|ZP_06021874.1| DNA-binding protein II [Staphylococcus aureus D30] gi|262051642|ref|ZP_06023862.1| DNA-binding protein II [Staphylococcus aureus 930918-3] gi|269203098|ref|YP_003282367.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98] gi|282876095|ref|ZP_06284962.1| DNA-binding protein HU [Staphylococcus epidermidis SK135] gi|282892970|ref|ZP_06301205.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117] gi|282904055|ref|ZP_06311943.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160] gi|282905819|ref|ZP_06313674.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus Btn1260] gi|282908789|ref|ZP_06316607.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911050|ref|ZP_06318852.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282914263|ref|ZP_06322050.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899] gi|282916740|ref|ZP_06324498.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus D139] gi|282919186|ref|ZP_06326921.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus C427] gi|282921720|ref|ZP_06329437.1| DNA-binding protein HU [Staphylococcus aureus A9765] gi|282924370|ref|ZP_06332044.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101] gi|282928001|ref|ZP_06335610.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102] gi|283770545|ref|ZP_06343437.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus H19] gi|283958237|ref|ZP_06375688.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus A017934/97] gi|284024471|ref|ZP_06378869.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus 132] gi|293366560|ref|ZP_06613237.1| DNA-binding protein HU [Staphylococcus epidermidis M23864:W2(grey)] gi|293501288|ref|ZP_06667139.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus 58-424] gi|293510250|ref|ZP_06668958.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809] gi|293526845|ref|ZP_06671529.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M1015] gi|294848436|ref|ZP_06789182.1| DNA-binding protein HU [Staphylococcus aureus A9754] gi|295407222|ref|ZP_06817022.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819] gi|295427981|ref|ZP_06820613.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275330|ref|ZP_06857837.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MR1] gi|297207868|ref|ZP_06924301.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244646|ref|ZP_06928529.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796] gi|297591049|ref|ZP_06949687.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8] gi|300911953|ref|ZP_07129396.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TCH70] gi|304380944|ref|ZP_07363603.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694468|sp|Q5HFV0|DBH_STAAC RecName: Full=DNA-binding protein HU gi|81696318|sp|Q6G990|DBH_STAAS RecName: Full=DNA-binding protein HU gi|81696482|sp|Q6GGT8|DBH_STAAR RecName: Full=DNA-binding protein HU gi|81704412|sp|Q7A0U9|DBH_STAAW RecName: Full=DNA-binding protein HU gi|81705666|sp|Q7A5J1|DBH_STAAN RecName: Full=DNA-binding protein HU gi|81781570|sp|Q99U17|DBH_STAAM RecName: Full=DNA-binding protein HU gi|27315623|gb|AAO04757.1|AE016747_254 DNA-binding protein II [Staphylococcus epidermidis ATCC 12228] gi|13701272|dbj|BAB42566.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315] gi|14247244|dbj|BAB57635.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50] gi|21204531|dbj|BAB95227.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2] gi|49241789|emb|CAG40480.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA252] gi|49244755|emb|CAG43191.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MSSA476] gi|57284614|gb|AAW36708.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL] gi|57637644|gb|AAW54432.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A] gi|82656601|emb|CAI81024.1| DNA-binding protein II [Staphylococcus aureus RF122] gi|87126479|gb|ABD20993.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202765|gb|ABD30575.1| DNA-binding protein HU, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741026|gb|ABQ49324.1| bacterial nucleoid protein Hbs [Staphylococcus aureus subsp. aureus JH9] gi|149946473|gb|ABR52409.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|150374394|dbj|BAF67654.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. Newman] gi|156721927|dbj|BAF78344.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3] gi|160368449|gb|ABX29420.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|239597528|gb|EEQ80026.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603] gi|242233888|gb|EES36200.1| DNA-binding protein II [Staphylococcus epidermidis W23144] gi|242348517|gb|EES40119.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1] gi|251805575|gb|EES58232.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060] gi|253724162|gb|EES92891.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728820|gb|EES97549.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus TCH130] gi|257271994|gb|EEV04132.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275037|gb|EEV06524.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus 65-1322] gi|257278954|gb|EEV09573.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281678|gb|EEV11815.1| histone family protein DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257284708|gb|EEV14828.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876] gi|257789444|gb|EEV27784.1| DNA-binding protein HU [Staphylococcus aureus A9781] gi|257839844|gb|EEV64312.1| DNA-binding protein HU [Staphylococcus aureus A9763] gi|257843561|gb|EEV67968.1| DNA-binding protein II [Staphylococcus aureus A9719] gi|257847253|gb|EEV71259.1| DNA-binding protein II [Staphylococcus aureus A9635] gi|257849969|gb|EEV73927.1| DNA-binding protein HU [Staphylococcus aureus A9299] gi|257850299|gb|EEV74252.1| DNA-binding protein II [Staphylococcus aureus A8115] gi|257853551|gb|EEV76510.1| DNA-binding protein HU [Staphylococcus aureus A6300] gi|257857003|gb|EEV79903.1| DNA-binding protein II [Staphylococcus aureus A6224] gi|257861186|gb|EEV83999.1| DNA-binding protein HU [Staphylococcus aureus A5948] gi|257862958|gb|EEV85722.1| histone family protein DNA-binding protein [Staphylococcus aureus A5937] gi|259160483|gb|EEW45507.1| DNA-binding protein II [Staphylococcus aureus 930918-3] gi|259162927|gb|EEW47490.1| DNA-binding protein II [Staphylococcus aureus D30] gi|262075388|gb|ACY11361.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98] gi|269940964|emb|CBI49348.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TW20] gi|281295120|gb|EFA87647.1| DNA-binding protein HU [Staphylococcus epidermidis SK135] gi|282313757|gb|EFB44150.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101] gi|282316996|gb|EFB47370.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus C427] gi|282319227|gb|EFB49579.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus D139] gi|282322331|gb|EFB52655.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899] gi|282324745|gb|EFB55055.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327053|gb|EFB57348.1| integration host factor, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331111|gb|EFB60625.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus Btn1260] gi|282590298|gb|EFB95378.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102] gi|282593982|gb|EFB98971.1| DNA-binding protein HU [Staphylococcus aureus A9765] gi|282595673|gb|EFC00637.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160] gi|282764967|gb|EFC05092.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117] gi|283460692|gb|EFC07782.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus H19] gi|283470684|emb|CAQ49895.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus aureus subsp. aureus ST398] gi|283790386|gb|EFC29203.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus A017934/97] gi|285817153|gb|ADC37640.1| DNA-binding protein II HBsu [Staphylococcus aureus 04-02981] gi|290920403|gb|EFD97467.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M1015] gi|291096293|gb|EFE26554.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus 58-424] gi|291319329|gb|EFE59698.1| DNA-binding protein HU [Staphylococcus epidermidis M23864:W2(grey)] gi|291467194|gb|EFF09712.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809] gi|294824462|gb|EFG40885.1| DNA-binding protein HU [Staphylococcus aureus A9754] gi|294967935|gb|EFG43964.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819] gi|295128339|gb|EFG57973.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887442|gb|EFH26342.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178676|gb|EFH37922.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796] gi|297575935|gb|EFH94651.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8] gi|298694762|gb|ADI97984.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus ED133] gi|300886199|gb|EFK81401.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TCH70] gi|302333083|gb|ADL23276.1| histone family protein DNA-binding protein HU [Staphylococcus aureus subsp. aureus JKD6159] gi|302751303|gb|ADL65480.1| histone family protein DNA-binding protein HU [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340530|gb|EFM06465.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438124|gb|ADQ77195.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TCH60] gi|312829863|emb|CBX34705.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129189|gb|EFT85184.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus CGS03] gi|315195370|gb|EFU25757.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus CGS00] gi|315197780|gb|EFU28114.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus CGS01] gi|319400822|gb|EFV89041.1| DNA-binding protein HU 1 [Staphylococcus epidermidis FRI909] gi|320140355|gb|EFW32211.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA131] gi|320142718|gb|EFW34521.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MRSA177] gi|323439525|gb|EGA97246.1| DNA-binding protein II [Staphylococcus aureus O11] gi|323442236|gb|EGA99867.1| DNA-binding protein II [Staphylococcus aureus O46] gi|329314149|gb|AEB88562.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus T0131] gi|329723176|gb|EGG59707.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus 21189] gi|329725443|gb|EGG61926.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU144] gi|329727498|gb|EGG63954.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus 21172] gi|329731360|gb|EGG67726.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus 21193] gi|329735377|gb|EGG71669.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU045] gi|329737246|gb|EGG73500.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU028] gi|330686039|gb|EGG97662.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU121] Length = 90 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I +S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >gi|228476046|ref|ZP_04060754.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119] gi|314936394|ref|ZP_07843741.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis C80] gi|228269869|gb|EEK11349.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119] gi|313655013|gb|EFS18758.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis C80] Length = 90 Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I +S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 90 >gi|319651353|ref|ZP_08005482.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2] gi|317396884|gb|EFV77593.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2] Length = 90 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F+ I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEAGELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKDAVK 90 >gi|73662582|ref|YP_301363.1| nucleoid DNA-binding protein HU [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495097|dbj|BAE18418.1| bacterial nucleoid DNA-binding protein HU [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 90 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >gi|332977211|gb|EGK14007.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 94 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L+ ++++ +++KD+T+ V + + I ++ GE +++ F F V+++ +R Sbjct: 2 RVVNKTELISQVAEKTNMTKKDATQAVDAVLDTITEALKAGEKVQLIGFGNFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E+ I +V FK LK + Sbjct: 62 KGRNPQTGKEIDIPASKVPAFKPGKALKDDVN 93 >gi|126653367|ref|ZP_01725471.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp. B14905] gi|299538558|ref|ZP_07051841.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1] gi|126589883|gb|EAZ84014.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp. B14905] gi|298726145|gb|EFI66737.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1] gi|327440783|dbj|BAK17148.1| bacterial nucleoid DNA-binding protein [Solibacillus silvestris StLB046] Length = 90 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+++ GLS+KD+++ V +F+ I D+ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 90 >gi|187478558|ref|YP_786582.1| integration host factor subunit alpha [Bordetella avium 197N] gi|123752290|sp|Q2KZM3|IHFA_BORA1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|115423144|emb|CAJ49675.1| integration host factor alpha-subunit [Bordetella avium 197N] Length = 116 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 61/106 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI ++ RG+++K+S F F V+ K R Sbjct: 10 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 GRN +T + + I RRVV F AS LK + + + D+ Sbjct: 70 PGRNPKTGETIPIAARRVVTFHASQKLKSTVEQSGNPAEVSDDEAA 115 >gi|289550748|ref|YP_003471652.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01] gi|289180280|gb|ADC87525.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01] Length = 90 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K + V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGKEIEIPASKVPAFKAGKALKDAVK 90 >gi|90961862|ref|YP_535778.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] gi|301299465|ref|ZP_07205740.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821056|gb|ABD99695.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] gi|300852928|gb|EFK80537.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] Length = 91 Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++ ++++ GL++KD+T V +F I D+ V GE +++ F F V+++ +R GR Sbjct: 3 NKAALIERVAEKTGLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 63 NPQTGEEIEIPASKVPAFKPGKSLKDAVK 91 >gi|294497364|ref|YP_003561064.1| DNA-binding protein HU [Bacillus megaterium QM B1551] gi|295702737|ref|YP_003595812.1| DNA-binding protein HU [Bacillus megaterium DSM 319] gi|294347301|gb|ADE67630.1| DNA-binding protein HU [Bacillus megaterium QM B1551] gi|294800396|gb|ADF37462.1| DNA-binding protein HU [Bacillus megaterium DSM 319] Length = 90 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ + L++ D+++ V L I + GE I++ F TF V+++ +R G Sbjct: 1 MNKTDLVNAVATKSELTKADASKAVDALLETISSTLGEGEKIQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIPASKVPAFKAGKELKEAVK 90 >gi|47565972|ref|ZP_00237010.1| DNA-binding protein HU [Bacillus cereus G9241] gi|47556889|gb|EAL15219.1| DNA-binding protein HU [Bacillus cereus G9241] Length = 90 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEASSLSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK K + Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKAFKDAVK 90 >gi|152975541|ref|YP_001375058.1| histone family protein DNA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024293|gb|ABS22063.1| histone family protein DNA-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 90 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 59/90 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQSADISQKDASVAVQSVFDTITNALQNGDKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|312795978|ref|YP_004028900.1| integration host factor alpha-subunit [Burkholderia rhizoxinica HKI 454] gi|312167753|emb|CBW74756.1| Integration host factor alpha-subunit [Burkholderia rhizoxinica HKI 454] Length = 160 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 55/95 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 59 TPTLTKAELAELLFDQVGLNKREAKDMVEAFFEAIRDALENGESVKLSGFGNFQLRDKPQ 118 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK ++ Sbjct: 119 RPGRNPKTGEAIPIAARRVVTFHASQKLKAQVESG 153 >gi|227551167|ref|ZP_03981216.1| DNA-binding protein II [Enterococcus faecium TX1330] gi|257877996|ref|ZP_05657649.1| DNA binding protein HU [Enterococcus faecium 1,230,933] gi|257881217|ref|ZP_05660870.1| DNA binding protein HU [Enterococcus faecium 1,231,502] gi|257884881|ref|ZP_05664534.1| DNA binding protein HU [Enterococcus faecium 1,231,501] gi|257887715|ref|ZP_05667368.1| DNA binding protein HU [Enterococcus faecium 1,141,733] gi|257889805|ref|ZP_05669458.1| DNA binding protein HU [Enterococcus faecium 1,231,410] gi|257892258|ref|ZP_05671911.1| DNA binding protein HU [Enterococcus faecium 1,231,408] gi|257896209|ref|ZP_05675862.1| DNA binding protein HU [Enterococcus faecium Com12] gi|257898847|ref|ZP_05678500.1| DNA binding protein HU [Enterococcus faecium Com15] gi|258616517|ref|ZP_05714287.1| DNA-binding protein HU [Enterococcus faecium DO] gi|260559047|ref|ZP_05831233.1| DNA binding protein HU [Enterococcus faecium C68] gi|261207581|ref|ZP_05922266.1| DNA binding protein HU [Enterococcus faecium TC 6] gi|289565093|ref|ZP_06445546.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF] gi|293379549|ref|ZP_06625691.1| DNA-binding protein HU [Enterococcus faecium PC4.1] gi|293556740|ref|ZP_06675303.1| DNA-binding protein HU [Enterococcus faecium E1039] gi|293563398|ref|ZP_06677847.1| DNA-binding protein HU 1 [Enterococcus faecium E1162] gi|293568056|ref|ZP_06679394.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Enterococcus faecium E1071] gi|293570250|ref|ZP_06681319.1| DNA-binding protein HU 1 [Enterococcus faecium E980] gi|294614845|ref|ZP_06694740.1| DNA-binding protein HU 1 [Enterococcus faecium E1636] gi|294618676|ref|ZP_06698210.1| DNA-binding protein HU 1 [Enterococcus faecium E1679] gi|294621938|ref|ZP_06701086.1| DNA-binding protein HU 1 [Enterococcus faecium U0317] gi|314938009|ref|ZP_07845319.1| DNA-binding protein HU [Enterococcus faecium TX0133a04] gi|314942005|ref|ZP_07848866.1| DNA-binding protein HU [Enterococcus faecium TX0133C] gi|314948742|ref|ZP_07852114.1| DNA-binding protein HU [Enterococcus faecium TX0082] gi|314951760|ref|ZP_07854799.1| DNA-binding protein HU [Enterococcus faecium TX0133A] gi|314991833|ref|ZP_07857291.1| DNA-binding protein HU [Enterococcus faecium TX0133B] gi|314995874|ref|ZP_07860961.1| DNA-binding protein HU [Enterococcus faecium TX0133a01] gi|227179729|gb|EEI60701.1| DNA-binding protein II [Enterococcus faecium TX1330] gi|257812224|gb|EEV40982.1| DNA binding protein HU [Enterococcus faecium 1,230,933] gi|257816875|gb|EEV44203.1| DNA binding protein HU [Enterococcus faecium 1,231,502] gi|257820719|gb|EEV47867.1| DNA binding protein HU [Enterococcus faecium 1,231,501] gi|257823769|gb|EEV50701.1| DNA binding protein HU [Enterococcus faecium 1,141,733] gi|257826165|gb|EEV52791.1| DNA binding protein HU [Enterococcus faecium 1,231,410] gi|257828637|gb|EEV55244.1| DNA binding protein HU [Enterococcus faecium 1,231,408] gi|257832774|gb|EEV59195.1| DNA binding protein HU [Enterococcus faecium Com12] gi|257836759|gb|EEV61833.1| DNA binding protein HU [Enterococcus faecium Com15] gi|260074804|gb|EEW63120.1| DNA binding protein HU [Enterococcus faecium C68] gi|260077964|gb|EEW65670.1| DNA binding protein HU [Enterococcus faecium TC 6] gi|289163100|gb|EFD10947.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF] gi|291589277|gb|EFF21087.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Enterococcus faecium E1071] gi|291592307|gb|EFF23921.1| DNA-binding protein HU 1 [Enterococcus faecium E1636] gi|291595059|gb|EFF26402.1| DNA-binding protein HU 1 [Enterococcus faecium E1679] gi|291598487|gb|EFF29556.1| DNA-binding protein HU 1 [Enterococcus faecium U0317] gi|291601072|gb|EFF31361.1| DNA-binding protein HU [Enterococcus faecium E1039] gi|291604659|gb|EFF34144.1| DNA-binding protein HU 1 [Enterococcus faecium E1162] gi|291609657|gb|EFF38918.1| DNA-binding protein HU 1 [Enterococcus faecium E980] gi|292641858|gb|EFF60026.1| DNA-binding protein HU [Enterococcus faecium PC4.1] gi|313589978|gb|EFR68823.1| DNA-binding protein HU [Enterococcus faecium TX0133a01] gi|313593644|gb|EFR72489.1| DNA-binding protein HU [Enterococcus faecium TX0133B] gi|313596039|gb|EFR74884.1| DNA-binding protein HU [Enterococcus faecium TX0133A] gi|313599257|gb|EFR78102.1| DNA-binding protein HU [Enterococcus faecium TX0133C] gi|313642584|gb|EFS07164.1| DNA-binding protein HU [Enterococcus faecium TX0133a04] gi|313644808|gb|EFS09388.1| DNA-binding protein HU [Enterococcus faecium TX0082] Length = 91 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++ ++ L++KD+T V +F+ I D+ GE +++ F F V+++ +R GR Sbjct: 3 NKAELIEKVASATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 63 NPQTGEEIEIPASKVPAFKPGKALKDAVK 91 >gi|227510316|ref|ZP_03940365.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513323|ref|ZP_03943372.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577] gi|227524467|ref|ZP_03954516.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290] gi|227083196|gb|EEI18508.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577] gi|227088337|gb|EEI23649.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290] gi|227189968|gb|EEI70035.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 91 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 54/89 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ E GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GR Sbjct: 3 NKAELVTNVATETGLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|319892463|ref|YP_004149338.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius HKU10-03] gi|317162159|gb|ADV05702.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius HKU10-03] gi|323464434|gb|ADX76587.1| DNA-binding protein HU [Staphylococcus pseudintermedius ED99] Length = 90 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGLAVDAVFEAIQTSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >gi|224476592|ref|YP_002634198.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus TM300] gi|222421199|emb|CAL28013.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus TM300] Length = 90 Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQAELTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >gi|295426287|ref|ZP_06818947.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] gi|295064026|gb|EFG54974.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] Length = 117 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V LF+ I ++ +G +++ F TF V+ + +R GR Sbjct: 29 NKAELVSEVASKTDLTKKEVAAAVEALFSSIQENLSKGNKVQLIGFGTFEVRHRAARKGR 88 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I V FK LK + Sbjct: 89 NPQTGAEIQIPASEVPAFKPGKALKYAVK 117 >gi|223043293|ref|ZP_03613340.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus capitis SK14] gi|314933655|ref|ZP_07841020.1| DNA-binding protein HU [Staphylococcus caprae C87] gi|222443504|gb|EEE49602.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Staphylococcus capitis SK14] gi|313653805|gb|EFS17562.1| DNA-binding protein HU [Staphylococcus caprae C87] Length = 90 Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ L++K++ V +F I S +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >gi|294501077|ref|YP_003564777.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM B1551] gi|295706425|ref|YP_003599500.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM 319] gi|294351014|gb|ADE71343.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM B1551] gi|294804084|gb|ADF41150.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM 319] Length = 90 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F+ I ++ + +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDAVFDTILEALKAEDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVK 90 >gi|56963393|ref|YP_175124.1| DNA-binding protein HU [Bacillus clausii KSM-K16] gi|56909636|dbj|BAD64163.1| DNA-binding protein HU [Bacillus clausii KSM-K16] Length = 91 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 58/91 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++S++ +S+KD+++ V +FN I +S V+G +++ F +F V+++ +R G Sbjct: 1 MNKTDLINAVSEQAEISKKDASKAVDAVFNGITESLVKGAKVQLVGFGSFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I + FK LK + + Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVNE 91 >gi|254514390|ref|ZP_05126451.1| DNA-binding protein HU [gamma proteobacterium NOR5-3] gi|219676633|gb|EED32998.1| DNA-binding protein HU [gamma proteobacterium NOR5-3] Length = 91 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +I+ +++ D+ R + + + I ++ RG+ + + F TF VK + +R G Sbjct: 1 MNKSDLIDAIASAADINKSDAGRALDAVVDSITETLKRGDQVSLVGFGTFSVKHRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI V FKA LK + Sbjct: 61 RNPQTGETIKIKASNVPGFKAGKALKDAVNQ 91 >gi|260428384|ref|ZP_05782363.1| integration host factor, alpha subunit [Citreicella sp. SE45] gi|260422876|gb|EEX16127.1| integration host factor, alpha subunit [Citreicella sp. SE45] Length = 149 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S V T+ + D+ V GE +KISSF TF V+ K Sbjct: 50 MSEKTLTRMDLSEAVFREVGLSRNESAELVETVLQHMSDALVEGEQVKISSFGTFSVRDK 109 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +RVGRN +T +EV I PRRV+ F+ S +K+R+ +G Sbjct: 110 AARVGRNPKTGEEVPIQPRRVLTFRPSHQMKERVAAGNKG 149 >gi|301066428|ref|YP_003788451.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang] gi|300438835|gb|ADK18601.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang] gi|327382402|gb|AEA53878.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei LC2W] gi|327385603|gb|AEA57077.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei BD-II] Length = 93 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GR Sbjct: 5 NKAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 64 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 65 NPQTGAEIKIPASKVPAFKPGKALKDAVK 93 >gi|304406950|ref|ZP_07388604.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] gi|304343937|gb|EFM09777.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] Length = 91 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 53/87 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ LS+KD+T+ V +F+ I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELIAKVAELTELSKKDATKAVDAVFDAISDALQTGDKVQLVGFGNFEVRERQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT +E++I ++ FK LK Sbjct: 61 RNPQTGEEIEIAASKMPAFKPGKSLKD 87 >gi|30020445|ref|NP_832076.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|75762127|ref|ZP_00742029.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206971712|ref|ZP_03232662.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|218232049|ref|YP_002367059.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218897327|ref|YP_002445738.1| DNA-binding protein HU [Bacillus cereus G9842] gi|228900972|ref|ZP_04065185.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222] gi|228908124|ref|ZP_04071972.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] gi|228921073|ref|ZP_04084408.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939512|ref|ZP_04102100.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952694|ref|ZP_04114768.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958629|ref|ZP_04120347.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228965347|ref|ZP_04126439.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228972365|ref|ZP_04132976.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978978|ref|ZP_04139343.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407] gi|229044105|ref|ZP_04191791.1| DNA-binding protein HU 1 [Bacillus cereus AH676] gi|229069884|ref|ZP_04203166.1| DNA-binding protein HU 1 [Bacillus cereus F65185] gi|229109797|ref|ZP_04239382.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15] gi|229127753|ref|ZP_04256742.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4] gi|229144952|ref|ZP_04273348.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24] gi|229150577|ref|ZP_04278792.1| DNA-binding protein HU 1 [Bacillus cereus m1550] gi|229178719|ref|ZP_04306083.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] gi|229190436|ref|ZP_04317436.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876] gi|296502915|ref|YP_003664615.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|29895996|gb|AAP09277.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|74490387|gb|EAO53701.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206733697|gb|EDZ50869.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|218160006|gb|ACK59998.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218543334|gb|ACK95728.1| DNA-binding protein HU [Bacillus cereus G9842] gi|228593049|gb|EEK50868.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876] gi|228604877|gb|EEK62334.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] gi|228632886|gb|EEK89500.1| DNA-binding protein HU 1 [Bacillus cereus m1550] gi|228638474|gb|EEK94908.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24] gi|228655830|gb|EEL11679.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4] gi|228673642|gb|EEL28901.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15] gi|228713287|gb|EEL65180.1| DNA-binding protein HU 1 [Bacillus cereus F65185] gi|228725218|gb|EEL76489.1| DNA-binding protein HU 1 [Bacillus cereus AH676] gi|228780760|gb|EEM28973.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407] gi|228787382|gb|EEM35350.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794337|gb|EEM41851.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228801050|gb|EEM47949.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228806970|gb|EEM53515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820212|gb|EEM66249.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838619|gb|EEM83925.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228851542|gb|EEM96348.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] gi|228858670|gb|EEN03117.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222] gi|296323967|gb|ADH06895.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|326940059|gb|AEA15955.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 59/90 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|315661119|gb|ADU54569.1| histone-like DNA binding protein [Lactobacillus agilis] Length = 101 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L+++++++ GL++KD+T V +F I D GE +++ F F V+++ +R GR Sbjct: 13 NKAQLIENVAEKTGLTKKDATVAVDAVFGSIQDFLKDGEKVQLIGFGNFEVRERAARKGR 72 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 73 NPQTGAEIEIPASKVPAFKPGKALKDAVK 101 >gi|317403230|gb|EFV83749.1| integration host factor subunit alpha [Achromobacter xylosoxidans C54] Length = 112 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 59/103 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K R Sbjct: 10 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T + + I RRVV F AS LK + ++ Sbjct: 70 PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQATPAAPDAEE 112 >gi|199598701|ref|ZP_03212115.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001] gi|258508386|ref|YP_003171137.1| DNA-binding protein HU [Lactobacillus rhamnosus GG] gi|258539597|ref|YP_003174096.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus rhamnosus Lc 705] gi|199590389|gb|EDY98481.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001] gi|257148313|emb|CAR87286.1| DNA-binding protein HU [Lactobacillus rhamnosus GG] gi|257151273|emb|CAR90245.1| DNA-binding protein HU [Lactobacillus rhamnosus Lc 705] gi|259649700|dbj|BAI41862.1| DNA-binding protein [Lactobacillus rhamnosus GG] gi|328462383|gb|EGF34439.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus rhamnosus MTCC 5462] Length = 91 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GR Sbjct: 3 NKAELIESVASATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDAVK 91 >gi|56964681|ref|YP_176412.1| DNA-binding protein HU [Bacillus clausii KSM-K16] gi|56910924|dbj|BAD65451.1| DNA-binding protein HU [Bacillus clausii KSM-K16] Length = 90 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD++ V ++F+ I +S +GE++++ F F V+++ +R G Sbjct: 1 MNKTELINALAERTQLSKKDASAAVNSMFDLISESLGKGESVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + FKA LK + Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >gi|51894365|ref|YP_077056.1| non-specific DNA-binding protein [Symbiobacterium thermophilum IAM 14863] gi|51858054|dbj|BAD42212.1| non-specific DNA-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 89 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV S++++ GL++KD+ + + + I ++ +G+ + + F TF V+ + +R G Sbjct: 1 MNKQDLVASVAEKSGLTKKDAEKALNAVVESIKEALKKGDKVSLVGFGTFEVRNRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + +KI +V F+ LK+ + Sbjct: 61 RNPQTGEPIKIPAGKVPAFRPGKELKESV 89 >gi|323701600|ref|ZP_08113272.1| histone family protein DNA-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533373|gb|EGB23240.1| histone family protein DNA-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 95 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ L++KD+ + V+ + + I ++ +G+ I++ F TF K + +R G Sbjct: 1 MNKAELISAVAEKTELTKKDAEKAVSAVLDSIQEAMAKGDKIQLVGFGTFESKARKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I RV VFK LK + + Sbjct: 61 RNPQTGETIQIPATRVPVFKPGKALKDAVAN 91 >gi|88703270|ref|ZP_01100986.1| Histone-like bacterial DNA-binding protein [Congregibacter litoralis KT71] gi|88701984|gb|EAQ99087.1| Histone-like bacterial DNA-binding protein [Congregibacter litoralis KT71] Length = 115 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +I+ +++ D+ R + + + I D+ +G+ + + F TF VK + +R G Sbjct: 25 VNKSDLIDAIASAADINKSDAGRALDAVVDSITDTLKKGDQVSLVGFGTFSVKHRAARDG 84 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI V FKA LK + Sbjct: 85 RNPQTGETIKIKASNVPGFKAGKALKDAVN 114 >gi|313902512|ref|ZP_07835913.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM 13965] gi|313467198|gb|EFR62711.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM 13965] Length = 90 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+++ GL++KDS R V I ++ RG+ + + F TF V+ + +R G Sbjct: 1 MNKPELVNAIAEKTGLNKKDSERAVNAFVESISEALARGDKVSLVGFGTFEVRTRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T Q + I +V FK L+ + Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLRDMVK 90 >gi|308069517|ref|YP_003871122.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus polymyxa E681] gi|305858796|gb|ADM70584.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus polymyxa E681] Length = 90 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +S+ LS+KD T+ + +F I + G+ +++ F F V+++ +R G Sbjct: 1 MNKTDLINQVSESTELSKKDVTKAIDAVFEAISGALQSGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I ++ FK LK I Sbjct: 61 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 90 >gi|89099134|ref|ZP_01172013.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. NRRL B-14911] gi|89086264|gb|EAR65386.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Bacillus sp. NRRL B-14911] Length = 90 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+T+ V +F+ I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELINAVAEAGELSKKDATKAVDAVFDTILNALKNGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGDEIEIAASKVPAFKPGKALKDAVK 90 >gi|169827490|ref|YP_001697648.1| DNA-binding protein HU [Lysinibacillus sphaericus C3-41] gi|168991978|gb|ACA39518.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Lysinibacillus sphaericus C3-41] Length = 93 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+++ GLS+KD+++ V +F+ I D+ +G+ +++ F F V+++ +R G Sbjct: 4 VNKTELVNSVAEAAGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 64 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 93 >gi|311105461|ref|YP_003978314.1| integration host factor subunit alpha [Achromobacter xylosoxidans A8] gi|310760150|gb|ADP15599.1| integration host factor, alpha subunit [Achromobacter xylosoxidans A8] Length = 112 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 35/103 (33%), Positives = 58/103 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K R Sbjct: 7 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 66 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T + + I RRVV F AS LK + D Sbjct: 67 PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQATPAAPEASD 109 >gi|116494867|ref|YP_806601.1| nucleoid DNA-binding protein [Lactobacillus casei ATCC 334] gi|191638374|ref|YP_001987540.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23] gi|239631540|ref|ZP_04674571.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105017|gb|ABJ70159.1| bacterial nucleoid protein Hbs [Lactobacillus casei ATCC 334] gi|190712676|emb|CAQ66682.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23] gi|239526005|gb|EEQ65006.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 91 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++S++ GL++KD+T V +F I DS +G+ +++ F F V+++ +R GR Sbjct: 3 NKAELIESVATATGLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDAVK 91 >gi|229096853|ref|ZP_04227822.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29] gi|229102961|ref|ZP_04233650.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28] gi|229115841|ref|ZP_04245239.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3] gi|229161324|ref|ZP_04289309.1| DNA-binding protein HU 1 [Bacillus cereus R309803] gi|228622138|gb|EEK78979.1| DNA-binding protein HU 1 [Bacillus cereus R309803] gi|228667584|gb|EEL23028.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3] gi|228680376|gb|EEL34564.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28] gi|228686463|gb|EEL40372.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29] Length = 90 Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 59/90 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|319779416|ref|YP_004130329.1| Integration host factor alpha subunit [Taylorella equigenitalis MCE9] gi|317109440|gb|ADU92186.1| Integration host factor alpha subunit [Taylorella equigenitalis MCE9] Length = 124 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 59/94 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT+T+++L + + + GL+++++ V FN+I D+ GE +K+S F F V+ K + Sbjct: 30 TKTLTKAELAEMLFESVGLNKREAKEIVDQFFNQIRDALANGEHVKLSGFGNFQVRDKAA 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN +T + + I+ RRVV F AS LK + + Sbjct: 90 RPGRNPKTGEVIPIEARRVVTFHASQKLKNAVGE 123 >gi|163940149|ref|YP_001645033.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|229011627|ref|ZP_04168810.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048] gi|229060025|ref|ZP_04197396.1| DNA-binding protein HU 1 [Bacillus cereus AH603] gi|229133208|ref|ZP_04262040.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196] gi|229167194|ref|ZP_04294935.1| DNA-binding protein HU 1 [Bacillus cereus AH621] gi|163862346|gb|ABY43405.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|228616232|gb|EEK73316.1| DNA-binding protein HU 1 [Bacillus cereus AH621] gi|228650227|gb|EEL06230.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196] gi|228719244|gb|EEL70852.1| DNA-binding protein HU 1 [Bacillus cereus AH603] gi|228749585|gb|EEL99427.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048] Length = 90 Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 59/90 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVK++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELVKNVAQSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|93006477|ref|YP_580914.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] gi|92394155|gb|ABE75430.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] Length = 90 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+++ GL++ + + + + ++ G++I + F TF VK + +R G Sbjct: 1 MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+ I +V FKA LK+R+ Sbjct: 61 RNPKTGEELSIPASKVPSFKAGKNLKERLN 90 >gi|331701407|ref|YP_004398366.1| histone family protein DNA-binding protein [Lactobacillus buchneri NRRL B-30929] gi|329128750|gb|AEB73303.1| histone family protein DNA-binding protein [Lactobacillus buchneri NRRL B-30929] Length = 91 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 52/89 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ GL++KD+T V +F I S +G+ +++ F F V+Q+ +R GR Sbjct: 3 NKAELVTNVAAATGLTKKDATSAVDAVFESIQASLAKGDKVQLIGFGNFEVRQRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|56475892|ref|YP_157481.1| integration host factor subunit alpha [Aromatoleum aromaticum EbN1] gi|81677575|sp|Q5P7Y1|IHFA_AZOSE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|56311935|emb|CAI06580.1| integration host factor, alpha-subunit [Aromatoleum aromaticum EbN1] Length = 103 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 35/103 (33%), Positives = 56/103 (54%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+T+++L + + GL+++++ V F EI + RGE +K+S F F ++ K Sbjct: 1 MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRQALERGECVKLSGFGNFQLRDKP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R GRN +T +E+ I RRVV F AS LK + K Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP 103 >gi|329907561|ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327546938|gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 137 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 60/96 (62%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL+++++ V T F+EI D+ RGE +K+S F F ++ K R Sbjct: 35 PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRDALERGELVKLSGFGNFQLRDKPQR 94 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV F AS LK + ++ Sbjct: 95 PGRNPKTGEEIPITARRVVTFHASQKLKSMVENEYP 130 >gi|328957353|ref|YP_004374739.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Carnobacterium sp. 17-4] gi|328673677|gb|AEB29723.1| non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Carnobacterium sp. 17-4] Length = 91 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L+++++ GL++KD+T V +F I S GE ++I F F V+ + +R GR Sbjct: 3 NKAELIENVATSTGLTKKDATSAVDAVFESIQTSLSEGEKVQIIGFGNFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 63 NPQTGEEIQIAASKVPAFKPGKALKDAVK 91 >gi|81428626|ref|YP_395626.1| histone-like DNA-binding protein HU [Lactobacillus sakei subsp. sakei 23K] gi|78610268|emb|CAI55317.1| Histone-like DNA-binding protein HU [Lactobacillus sakei subsp. sakei 23K] Length = 91 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 54/89 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L+++++ + GL++KD+T V +F I D+ +G+ +++ F TF V+++ +R GR Sbjct: 3 NKAQLIENVASKTGLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGTFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDSVK 91 >gi|146296237|ref|YP_001180008.1| histone family protein DNA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|302871272|ref|YP_003839908.1| histone family protein DNA-binding protein [Caldicellulosiruptor obsidiansis OB47] gi|312128213|ref|YP_003993087.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|312134569|ref|YP_004001907.1| histone family protein DNA-binding protein [Caldicellulosiruptor owensensis OL] gi|312623028|ref|YP_004024641.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] gi|312792841|ref|YP_004025764.1| histone family protein DNA-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876107|ref|ZP_07736095.1| histone family protein DNA-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|145409813|gb|ABP66817.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor saccharolyticus DSM 8903] gi|302574131|gb|ADL41922.1| histone family protein DNA-binding protein [Caldicellulosiruptor obsidiansis OB47] gi|311774620|gb|ADQ04107.1| histone family protein DNA-binding protein [Caldicellulosiruptor owensensis OL] gi|311778232|gb|ADQ07718.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311797093|gb|EFR13434.1| histone family protein DNA-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|312179981|gb|ADQ40151.1| histone family protein DNA-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312203495|gb|ADQ46822.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] Length = 91 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 59/91 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++KD+ + + + + ++ +GE +++ F +F V+++ RVG Sbjct: 1 MNKTDLISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+KI +V VFKA +LK + Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLKDAVAK 91 >gi|259503208|ref|ZP_05746110.1| DNA-binding protein HU [Lactobacillus antri DSM 16041] gi|312869155|ref|ZP_07729329.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3] gi|259168865|gb|EEW53360.1| DNA-binding protein HU [Lactobacillus antri DSM 16041] gi|311095401|gb|EFQ53671.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3] Length = 91 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GR Sbjct: 3 NKAELVSNVANATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|30262382|ref|NP_844759.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42781470|ref|NP_978717.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47527672|ref|YP_019021.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47565733|ref|ZP_00236773.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49185222|ref|YP_028474.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49479951|ref|YP_036479.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143101|ref|YP_083727.1| DNA-binding protein HU [Bacillus cereus E33L] gi|65319674|ref|ZP_00392633.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis str. A2012] gi|118477778|ref|YP_894929.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|165870548|ref|ZP_02215202.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167633079|ref|ZP_02391405.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|167639624|ref|ZP_02397894.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|170686924|ref|ZP_02878143.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|170706668|ref|ZP_02897127.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|177649761|ref|ZP_02932763.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190565679|ref|ZP_03018599.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|196034013|ref|ZP_03101424.1| DNA-binding protein HU [Bacillus cereus W] gi|196039953|ref|ZP_03107256.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|196043718|ref|ZP_03110956.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|206973759|ref|ZP_03234677.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217959874|ref|YP_002338430.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218903511|ref|YP_002451345.1| DNA-binding protein HU [Bacillus cereus AH820] gi|222095963|ref|YP_002530020.1| DNA-binding protein hu [Bacillus cereus Q1] gi|225864340|ref|YP_002749718.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227814812|ref|YP_002814821.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228914965|ref|ZP_04078570.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927433|ref|ZP_04090489.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933667|ref|ZP_04096515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945981|ref|ZP_04108323.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985463|ref|ZP_04145620.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229030079|ref|ZP_04186143.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] gi|229091352|ref|ZP_04222567.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42] gi|229121924|ref|ZP_04251143.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201] gi|229139067|ref|ZP_04267644.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26] gi|229155954|ref|ZP_04284055.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342] gi|229184586|ref|ZP_04311788.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1] gi|229196589|ref|ZP_04323333.1| DNA-binding protein HU 1 [Bacillus cereus m1293] gi|229602245|ref|YP_002866714.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|254684954|ref|ZP_05148814.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066] gi|254722361|ref|ZP_05184149.1| DNA-binding protein HU [Bacillus anthracis str. A1055] gi|254737402|ref|ZP_05195106.1| DNA-binding protein HU [Bacillus anthracis str. Western North America USA6153] gi|254743414|ref|ZP_05201099.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B] gi|254751717|ref|ZP_05203754.1| DNA-binding protein HU [Bacillus anthracis str. Vollum] gi|254760236|ref|ZP_05212260.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94] gi|301053896|ref|YP_003792107.1| DNA-binding protein HU [Bacillus anthracis CI] gi|30257013|gb|AAP26245.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42737392|gb|AAS41325.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47502820|gb|AAT31496.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47557369|gb|EAL15697.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49179149|gb|AAT54525.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49331507|gb|AAT62153.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976570|gb|AAU18120.1| DNA-binding protein HU [Bacillus cereus E33L] gi|118417003|gb|ABK85422.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164713703|gb|EDR19226.1| DNA-binding protein HU [Bacillus anthracis str. A0488] gi|167512333|gb|EDR87709.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|167531891|gb|EDR94556.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|170128399|gb|EDS97267.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|170668975|gb|EDT19719.1| DNA-binding protein HU [Bacillus anthracis str. A0465] gi|172084835|gb|EDT69893.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190563706|gb|EDV17671.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|195993693|gb|EDX57650.1| DNA-binding protein HU [Bacillus cereus W] gi|196026027|gb|EDX64696.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|196029212|gb|EDX67816.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|206747915|gb|EDZ59304.1| DNA-binding protein HU [Bacillus cereus H3081.97] gi|217067193|gb|ACJ81443.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218535688|gb|ACK88086.1| DNA-binding protein HU [Bacillus cereus AH820] gi|221240021|gb|ACM12731.1| DNA-binding protein HU [Bacillus cereus Q1] gi|225788591|gb|ACO28808.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227004414|gb|ACP14157.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228586945|gb|EEK45019.1| DNA-binding protein HU 1 [Bacillus cereus m1293] gi|228598903|gb|EEK56521.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1] gi|228627561|gb|EEK84287.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342] gi|228644422|gb|EEL00677.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26] gi|228661573|gb|EEL17194.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201] gi|228691981|gb|EEL45723.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42] gi|228731249|gb|EEL82167.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] gi|228774228|gb|EEM22637.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813729|gb|EEM60008.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825994|gb|EEM71779.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832226|gb|EEM77807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844761|gb|EEM89807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266653|gb|ACQ48290.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|300376065|gb|ADK04969.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI] gi|324326392|gb|ADY21652.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus YBT-020] Length = 90 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I + G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQSADISQKDASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|33593555|ref|NP_881199.1| integration host factor subunit alpha [Bordetella pertussis Tohama I] gi|81713302|sp|Q7VVR6|IHFA_BORPE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|33572911|emb|CAE42847.1| integration host factor alpha-subunit [Bordetella pertussis Tohama I] gi|332382962|gb|AEE67809.1| integration host factor subunit alpha [Bordetella pertussis CS] Length = 113 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 57/93 (61%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K R Sbjct: 10 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F AS LK + Sbjct: 70 PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQ 102 >gi|33597181|ref|NP_884824.1| integration host factor subunit alpha [Bordetella parapertussis 12822] gi|33601025|ref|NP_888585.1| integration host factor subunit alpha [Bordetella bronchiseptica RB50] gi|81713742|sp|Q7W7C5|IHFA_BORPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81714215|sp|Q7WKR3|IHFA_BORBR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|33573608|emb|CAE37892.1| integration host factor alpha-subunit [Bordetella parapertussis] gi|33575460|emb|CAE32538.1| integration host factor alpha-subunit [Bordetella bronchiseptica RB50] Length = 113 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 57/93 (61%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K R Sbjct: 10 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F AS LK + Sbjct: 70 PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQ 102 >gi|323340746|ref|ZP_08080998.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644] gi|323091869|gb|EFZ34489.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644] Length = 91 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L+++++++ GL++KD+T V +F I D +G+ +++ F F V+++ +R GR Sbjct: 3 NKAQLIETVAEKTGLTKKDATVAVDAVFGSIQDFLEKGDKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91 >gi|256847159|ref|ZP_05552605.1| integration host factor, alpha subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715823|gb|EEU30798.1| integration host factor, alpha subunit [Lactobacillus coleohominis 101-4-CHN] Length = 91 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GR Sbjct: 3 NKAELVSNVASATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|325571136|ref|ZP_08146708.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755] gi|325156221|gb|EGC68407.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755] Length = 103 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++ ++ L++KD+T V +F+ I D+ GE +++ F F V+ + R GR Sbjct: 15 NKAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGR 74 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FK LK + Sbjct: 75 NPQTGEEIKIPASKVPAFKPGKALKDAVK 103 >gi|29376113|ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V583] gi|227518741|ref|ZP_03948790.1| DNA-binding protein HU [Enterococcus faecalis TX0104] gi|227553351|ref|ZP_03983400.1| DNA-binding protein HU [Enterococcus faecalis HH22] gi|229545834|ref|ZP_04434559.1| DNA-binding protein HU [Enterococcus faecalis TX1322] gi|229550026|ref|ZP_04438751.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200] gi|255972807|ref|ZP_05423393.1| DNA-binding protein II [Enterococcus faecalis T1] gi|255975863|ref|ZP_05426449.1| DNA-binding protein II [Enterococcus faecalis T2] gi|256619053|ref|ZP_05475899.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200] gi|256762479|ref|ZP_05503059.1| DNA-binding protein II [Enterococcus faecalis T3] gi|256853115|ref|ZP_05558485.1| DNA-binding protein HU [Enterococcus faecalis T8] gi|256958970|ref|ZP_05563141.1| DNA-binding protein II [Enterococcus faecalis DS5] gi|256961937|ref|ZP_05566108.1| DNA-binding protein II [Enterococcus faecalis Merz96] gi|256965135|ref|ZP_05569306.1| DNA-binding protein II [Enterococcus faecalis HIP11704] gi|257079001|ref|ZP_05573362.1| DNA-binding protein II [Enterococcus faecalis JH1] gi|257082560|ref|ZP_05576921.1| DNA-binding protein II [Enterococcus faecalis E1Sol] gi|257085193|ref|ZP_05579554.1| DNA-binding protein II [Enterococcus faecalis Fly1] gi|257086754|ref|ZP_05581115.1| DNA-binding protein II [Enterococcus faecalis D6] gi|257089875|ref|ZP_05584236.1| DNA-binding protein HU [Enterococcus faecalis CH188] gi|257416083|ref|ZP_05593077.1| DNA-binding protein II [Enterococcus faecalis AR01/DG] gi|257419286|ref|ZP_05596280.1| DNA-binding protein [Enterococcus faecalis T11] gi|257422629|ref|ZP_05599619.1| DNA-binding protein HU [Enterococcus faecalis X98] gi|293383005|ref|ZP_06628923.1| DNA-binding protein HU [Enterococcus faecalis R712] gi|293389506|ref|ZP_06633963.1| DNA-binding protein HU [Enterococcus faecalis S613] gi|294781353|ref|ZP_06746696.1| DNA-binding protein HU [Enterococcus faecalis PC1.1] gi|300860723|ref|ZP_07106810.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11] gi|307271028|ref|ZP_07552311.1| DNA-binding protein HU [Enterococcus faecalis TX4248] gi|307273235|ref|ZP_07554481.1| DNA-binding protein HU [Enterococcus faecalis TX0855] gi|307274972|ref|ZP_07556135.1| DNA-binding protein HU [Enterococcus faecalis TX2134] gi|307278084|ref|ZP_07559168.1| DNA-binding protein HU [Enterococcus faecalis TX0860] gi|307289095|ref|ZP_07569051.1| DNA-binding protein HU [Enterococcus faecalis TX0109] gi|307292006|ref|ZP_07571875.1| DNA-binding protein HU [Enterococcus faecalis TX0411] gi|312900750|ref|ZP_07760047.1| DNA-binding protein HU [Enterococcus faecalis TX0470] gi|312903297|ref|ZP_07762477.1| DNA-binding protein HU [Enterococcus faecalis TX0635] gi|312907524|ref|ZP_07766515.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512] gi|312910142|ref|ZP_07768989.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516] gi|312951483|ref|ZP_07770379.1| DNA-binding protein HU [Enterococcus faecalis TX0102] gi|29343575|gb|AAO81337.1| DNA-binding protein HU [Enterococcus faecalis V583] gi|227073822|gb|EEI11785.1| DNA-binding protein HU [Enterococcus faecalis TX0104] gi|227177520|gb|EEI58492.1| DNA-binding protein HU [Enterococcus faecalis HH22] gi|229304832|gb|EEN70828.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200] gi|229309033|gb|EEN75020.1| DNA-binding protein HU [Enterococcus faecalis TX1322] gi|255963825|gb|EET96301.1| DNA-binding protein II [Enterococcus faecalis T1] gi|255968735|gb|EET99357.1| DNA-binding protein II [Enterococcus faecalis T2] gi|256598580|gb|EEU17756.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200] gi|256683730|gb|EEU23425.1| DNA-binding protein II [Enterococcus faecalis T3] gi|256711574|gb|EEU26612.1| DNA-binding protein HU [Enterococcus faecalis T8] gi|256949466|gb|EEU66098.1| DNA-binding protein II [Enterococcus faecalis DS5] gi|256952433|gb|EEU69065.1| DNA-binding protein II [Enterococcus faecalis Merz96] gi|256955631|gb|EEU72263.1| DNA-binding protein II [Enterococcus faecalis HIP11704] gi|256987031|gb|EEU74333.1| DNA-binding protein II [Enterococcus faecalis JH1] gi|256990590|gb|EEU77892.1| DNA-binding protein II [Enterococcus faecalis E1Sol] gi|256993223|gb|EEU80525.1| DNA-binding protein II [Enterococcus faecalis Fly1] gi|256994784|gb|EEU82086.1| DNA-binding protein II [Enterococcus faecalis D6] gi|256998687|gb|EEU85207.1| DNA-binding protein HU [Enterococcus faecalis CH188] gi|257157911|gb|EEU87871.1| DNA-binding protein II [Enterococcus faecalis ARO1/DG] gi|257161114|gb|EEU91074.1| DNA-binding protein [Enterococcus faecalis T11] gi|257164453|gb|EEU94413.1| DNA-binding protein HU [Enterococcus faecalis X98] gi|291079670|gb|EFE17034.1| DNA-binding protein HU [Enterococcus faecalis R712] gi|291081123|gb|EFE18086.1| DNA-binding protein HU [Enterococcus faecalis S613] gi|294451583|gb|EFG20042.1| DNA-binding protein HU [Enterococcus faecalis PC1.1] gi|295112974|emb|CBL31611.1| bacterial nucleoid protein Hbs [Enterococcus sp. 7L76] gi|300849762|gb|EFK77512.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11] gi|306497004|gb|EFM66552.1| DNA-binding protein HU [Enterococcus faecalis TX0411] gi|306499804|gb|EFM69165.1| DNA-binding protein HU [Enterococcus faecalis TX0109] gi|306505481|gb|EFM74667.1| DNA-binding protein HU [Enterococcus faecalis TX0860] gi|306508420|gb|EFM77527.1| DNA-binding protein HU [Enterococcus faecalis TX2134] gi|306510220|gb|EFM79244.1| DNA-binding protein HU [Enterococcus faecalis TX0855] gi|306512526|gb|EFM81175.1| DNA-binding protein HU [Enterococcus faecalis TX4248] gi|310626552|gb|EFQ09835.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512] gi|310630449|gb|EFQ13732.1| DNA-binding protein HU [Enterococcus faecalis TX0102] gi|310633173|gb|EFQ16456.1| DNA-binding protein HU [Enterococcus faecalis TX0635] gi|311289415|gb|EFQ67971.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516] gi|311292231|gb|EFQ70787.1| DNA-binding protein HU [Enterococcus faecalis TX0470] gi|315027276|gb|EFT39208.1| DNA-binding protein HU [Enterococcus faecalis TX2137] gi|315029395|gb|EFT41327.1| DNA-binding protein HU [Enterococcus faecalis TX4000] gi|315033959|gb|EFT45891.1| DNA-binding protein HU [Enterococcus faecalis TX0017] gi|315036968|gb|EFT48900.1| DNA-binding protein HU [Enterococcus faecalis TX0027] gi|315144427|gb|EFT88443.1| DNA-binding protein HU [Enterococcus faecalis TX2141] gi|315147254|gb|EFT91270.1| DNA-binding protein HU [Enterococcus faecalis TX4244] gi|315150547|gb|EFT94563.1| DNA-binding protein HU [Enterococcus faecalis TX0012] gi|315152494|gb|EFT96510.1| DNA-binding protein HU [Enterococcus faecalis TX0031] gi|315155772|gb|EFT99788.1| DNA-binding protein HU [Enterococcus faecalis TX0043] gi|315158061|gb|EFU02078.1| DNA-binding protein HU [Enterococcus faecalis TX0312] gi|315160455|gb|EFU04472.1| DNA-binding protein HU [Enterococcus faecalis TX0645] gi|315164004|gb|EFU08021.1| DNA-binding protein HU [Enterococcus faecalis TX1302] gi|315169045|gb|EFU13062.1| DNA-binding protein HU [Enterococcus faecalis TX1341] gi|315169717|gb|EFU13734.1| DNA-binding protein HU [Enterococcus faecalis TX1342] gi|315172322|gb|EFU16339.1| DNA-binding protein HU [Enterococcus faecalis TX1346] gi|315575877|gb|EFU88068.1| DNA-binding protein HU [Enterococcus faecalis TX0309B] gi|315577717|gb|EFU89908.1| DNA-binding protein HU [Enterococcus faecalis TX0630] gi|315580529|gb|EFU92720.1| DNA-binding protein HU [Enterococcus faecalis TX0309A] gi|323480713|gb|ADX80152.1| DNA-binding protein HU 1 [Enterococcus faecalis 62] gi|327535122|gb|AEA93956.1| DNA-binding protein HU [Enterococcus faecalis OG1RF] gi|329571713|gb|EGG53394.1| DNA-binding protein HU-beta [Enterococcus faecalis TX1467] Length = 91 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 55/89 (61%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L+++++ GL++KD+T V +F+ I ++ +GE +++ F F V+++ +R GR Sbjct: 3 NKAELIENVASSTGLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIAASKVPAFKPGKALKDAVK 91 >gi|114321434|ref|YP_743117.1| histone family protein DNA-binding protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227828|gb|ABI57627.1| histone family protein DNA-binding protein [Alkalilimnicola ehrlichii MLHE-1] Length = 90 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ +S+ ++R V ++ + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIEAVAQSADISKAAASRAVDSMVECVTNALKEGDQVTLVGFGTFQVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I +V FKA LK + Sbjct: 61 RNPRTGETINIAASKVPSFKAGKALKDAVN 90 >gi|229085283|ref|ZP_04217525.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|228698002|gb|EEL50745.1| DNA-binding protein HU [Bacillus cereus Rock3-44] Length = 90 Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 59/90 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+KD++ V ++F+ I ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTADISQKDASVAVQSVFDAITNALQTGDKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|257867662|ref|ZP_05647315.1| DNA binding protein HU [Enterococcus casseliflavus EC30] gi|257869557|ref|ZP_05649210.1| DNA binding protein HU [Enterococcus gallinarum EG2] gi|257873990|ref|ZP_05653643.1| DNA binding protein HU [Enterococcus casseliflavus EC10] gi|257876569|ref|ZP_05656222.1| DNA binding protein HU [Enterococcus casseliflavus EC20] gi|257801745|gb|EEV30648.1| DNA binding protein HU [Enterococcus casseliflavus EC30] gi|257803721|gb|EEV32543.1| DNA binding protein HU [Enterococcus gallinarum EG2] gi|257808154|gb|EEV36976.1| DNA binding protein HU [Enterococcus casseliflavus EC10] gi|257810735|gb|EEV39555.1| DNA binding protein HU [Enterococcus casseliflavus EC20] Length = 91 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++ ++ L++KD+T V +F+ I D+ GE +++ F F V+ + R GR Sbjct: 3 NKAELIEKVAAATDLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FK LK + Sbjct: 63 NPQTGEEIKIPASKVPAFKPGKALKDAVK 91 >gi|322381812|ref|ZP_08055766.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154200|gb|EFX46522.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 90 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ LS+KD+T+ V +F I ++ G+ +++ F F V+++ +R G Sbjct: 1 MNKSDLIAKVAEASELSKKDATKAVDAVFEAIAEALKEGDKVQLVGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK+ I Sbjct: 61 RNPQTGEEIEIAASKVPAFKPGKALKEGIQ 90 >gi|293604706|ref|ZP_06687106.1| integration host factor subunit alpha [Achromobacter piechaudii ATCC 43553] gi|292816875|gb|EFF75956.1| integration host factor subunit alpha [Achromobacter piechaudii ATCC 43553] Length = 113 Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 58/103 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K R Sbjct: 11 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPR 70 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T + + I RRVV F AS LK + + Sbjct: 71 PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQATPAAPDAAE 113 >gi|227529195|ref|ZP_03959244.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540] gi|227350920|gb|EEJ41211.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540] Length = 91 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GR Sbjct: 3 NKAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|332971724|gb|EGK10672.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 90 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ +++ G ++K+S V + + I ++ GE + + F F V+++ +R G Sbjct: 1 MNKTELIERVAESTGKTKKESAHLVEAVLDSIAEALRNGEKVSLIGFGNFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I +V FK LK+ + Sbjct: 61 RNPQTGEPIEIGASKVPAFKPGKQLKEAVN 90 >gi|222528663|ref|YP_002572545.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] gi|222455510|gb|ACM59772.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 91 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 59/91 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GL++KD+ + + + + ++ +GE +++ F +F V+++ RVG Sbjct: 1 MNKTELISAMAEKSGLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+KI +V VFKA +LK + Sbjct: 61 RNPQTQEEIKIPATKVPVFKAGKMLKDAVAK 91 >gi|220934118|ref|YP_002513017.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995428|gb|ACL72030.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. HL-EbGR7] Length = 90 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + R V + + I + G+ + I F TF V+++ +R G Sbjct: 1 MNKSELIDAIAASSDLPKAQAARAVDAMIDVISGALKNGDQVTIVGFGTFLVREREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I ++ FKA LK + Sbjct: 61 RNPRTGETIQIAASKMPSFKAGKGLKDAVN 90 >gi|15615918|ref|NP_244222.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] gi|14194648|sp|Q9K7K5|DBH2_BACHD RecName: Full=DNA-binding protein HU-1 gi|10175979|dbj|BAB07075.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus halodurans C-125] Length = 90 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ +S+KD+ V T+F+ I +S +G+++++ F F V+++ +R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + FKA LK + Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >gi|149180539|ref|ZP_01859043.1| non-specific DNA-binding protein [Bacillus sp. SG-1] gi|148851692|gb|EDL65838.1| non-specific DNA-binding protein [Bacillus sp. SG-1] Length = 91 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ LS+KD+ V + I D+ +GE +++ F F V+++ +R G Sbjct: 1 MNKTDLINAVAESAELSKKDAENAVKAVLQNIEDTLAKGEKVQLIGFGNFEVRERSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FK LK + Sbjct: 61 RNPQTGEEMEIPATKQPAFKPGKALKDSVN 90 >gi|119897376|ref|YP_932589.1| integration host factor subunit alpha [Azoarcus sp. BH72] gi|189044692|sp|A1K4E7|IHFA_AZOSB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119669789|emb|CAL93702.1| integration host factor alpha-subunit [Azoarcus sp. BH72] Length = 103 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 57/103 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+T+++L + + GL+++++ V F EI + RG+++K+S F F ++ K Sbjct: 1 MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R GRN +T +E+ I RRVV F AS LK + K Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP 103 >gi|332971824|gb|EGK10771.1| DNA-binding protein HU-beta [Psychrobacter sp. 1501(2011)] Length = 90 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++ + + + + ++ + I + F TF VK + +R G Sbjct: 1 MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKDRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I RV FKA LK R+ Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRLN 90 >gi|292490922|ref|YP_003526361.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291579517|gb|ADE13974.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 90 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S+++ L++ + R V ++ + D+ RG+ + I F TF V+ + +R G Sbjct: 1 MNKSELIESVAESGDLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGEEIKIKASKIPSFKAGKALKDAVN 90 >gi|28378532|ref|NP_785424.1| DNA-binding protein II [Lactobacillus plantarum WCFS1] gi|254556746|ref|YP_003063163.1| DNA-binding protein II [Lactobacillus plantarum JDM1] gi|300767478|ref|ZP_07077390.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180690|ref|YP_003924818.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271368|emb|CAD64273.1| DNA-binding protein II [Lactobacillus plantarum WCFS1] gi|254045673|gb|ACT62466.1| DNA-binding protein II [Lactobacillus plantarum JDM1] gi|300495297|gb|EFK30453.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046181|gb|ADN98724.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum subsp. plantarum ST-III] Length = 91 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ L++KD+T V +F I D+ +GE +++ F F V+++ +R GR Sbjct: 3 NKAELVNNVAAATNLTKKDATAAVDAVFASIQDTLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGDEIQIPASKVPAFKPGKALKDAVK 91 >gi|83748303|ref|ZP_00945328.1| Integration host factor alpha-subunit [Ralstonia solanacearum UW551] gi|83725035|gb|EAP72188.1| Integration host factor alpha-subunit [Ralstonia solanacearum UW551] Length = 175 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 73 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 132 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + Sbjct: 133 PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 168 >gi|147676456|ref|YP_001210671.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] gi|146272553|dbj|BAF58302.1| bacterial nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 91 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 58/91 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ L++KD+ + ++ + + ++ RG+ +++ F TF ++++ +R G Sbjct: 1 MNKAELISNVAEKTELTKKDAEKAISAFLDTVGEALARGDKVQLVGFGTFEIRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I RV VFKA L+ ++ Sbjct: 61 RNPQTGEEINIAAARVPVFKAGKALRDAVLK 91 >gi|90410785|ref|ZP_01218800.1| putative bacterial nucleoid DNA-binding protein [Photobacterium profundum 3TCK] gi|90328416|gb|EAS44714.1| putative bacterial nucleoid DNA-binding protein [Photobacterium profundum 3TCK] Length = 91 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + + + G+ + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGEEIQIAAAKVPGFKPGKALKDSVN 90 >gi|88810610|ref|ZP_01125867.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231] gi|88792240|gb|EAR23350.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231] Length = 90 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ +++ LS+ ++R V + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIEVVAQSADLSKAAASRAVDAFVTSVTDALKEGDQVTLVGFGTFAVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FKA LK + Sbjct: 61 RNPRTGESITIPASKTPGFKAGKALKDAVN 90 >gi|134095000|ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas arsenicoxydans] gi|133738903|emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas arsenicoxydans] Length = 151 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 59/92 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL+++++ V T F+EI ++ RGEA+K+S F F ++ K R Sbjct: 49 PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 108 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F AS LK + Sbjct: 109 PGRNPKTGEEIPITARRVVTFHASQKLKSMVE 140 >gi|260893900|ref|YP_003239997.1| histone family protein DNA-binding protein [Ammonifex degensii KC4] gi|260866041|gb|ACX53147.1| histone family protein DNA-binding protein [Ammonifex degensii KC4] Length = 95 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV ++++ +++KD+ + VT +F+ I ++ RG+ +++ F TF V+++ +R G Sbjct: 1 MNKSDLVAQVAEKAEMTKKDAEKAVTAVFDAIAEALARGDKVQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E++I +V VF+A LK + Sbjct: 61 RNPQTGAEIEIAACKVPVFRAGKALKAAV 89 >gi|253998435|ref|YP_003050498.1| integration host factor subunit alpha [Methylovorus sp. SIP3-4] gi|313200510|ref|YP_004039168.1| integration host factor subunit alpha [Methylovorus sp. MP688] gi|253985114|gb|ACT49971.1| integration host factor, alpha subunit [Methylovorus sp. SIP3-4] gi|312439826|gb|ADQ83932.1| integration host factor, alpha subunit [Methylovorus sp. MP688] Length = 100 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 59/99 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL + ++ GL+++++ V F EI + G+++K+S F F ++QK R Sbjct: 2 TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRTALESGDSVKLSGFGNFELRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +E+ I RRVV F AS LK ++ + G + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKLKVEEAYAGDRA 100 >gi|148653424|ref|YP_001280517.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] gi|148572508|gb|ABQ94567.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] Length = 90 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++ + + + + ++ + I + F TF VK++ +R G Sbjct: 1 MNKSELVDSIAEKSGLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I RV FKA LK R+ Sbjct: 61 RNPKTGDELQIPASRVPHFKAGKGLKDRLN 90 >gi|288553957|ref|YP_003425892.1| DNA-binding protein HU [Bacillus pseudofirmus OF4] gi|288545117|gb|ADC49000.1| DNA-binding protein HU, Hbsu-like protein [Bacillus pseudofirmus OF4] Length = 90 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ LS+KD+ V +F+ I ++ +GE +++ F F V+++ +R G Sbjct: 1 MNKTELINEVAERTQLSKKDAGNAVNEVFDVISETMSKGETVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + FKA LK + Sbjct: 61 RNPQTGEEIDIPATKTPAFKAGKQLKDAVK 90 >gi|163856951|ref|YP_001631249.1| integration host factor subunit alpha [Bordetella petrii DSM 12804] gi|163260679|emb|CAP42981.1| integration host factor alpha-subunit [Bordetella petrii] Length = 107 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 58/102 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + + GL+++++ V T F EI D+ RG+++K+S F F V+ K R Sbjct: 6 RTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRNKPPR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + + I RRVV F AS LK + + Sbjct: 66 PGRNPKTGETIPIAARRVVTFHASQKLKSVVEQADSANNSGE 107 >gi|228988924|ref|ZP_04148973.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770838|gb|EEM19354.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 90 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K +++ L++KD++ + + I ++ + GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKQVAENTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKAAVK 90 >gi|148543996|ref|YP_001271366.1| nucleoid protein Hbs [Lactobacillus reuteri DSM 20016] gi|184153390|ref|YP_001841731.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112] gi|194467924|ref|ZP_03073910.1| histone family protein DNA-binding protein [Lactobacillus reuteri 100-23] gi|227364909|ref|ZP_03848954.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3] gi|227543423|ref|ZP_03973472.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A] gi|300910089|ref|ZP_07127549.1| DNA-binding protein HU [Lactobacillus reuteri SD2112] gi|325682466|ref|ZP_08161983.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A] gi|133930435|gb|ABO43789.1| DNA-binding protein [Lactobacillus reuteri] gi|148531030|gb|ABQ83029.1| bacterial nucleoid protein Hbs [Lactobacillus reuteri DSM 20016] gi|183224734|dbj|BAG25251.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112] gi|194452777|gb|EDX41675.1| histone family protein DNA-binding protein [Lactobacillus reuteri 100-23] gi|227070056|gb|EEI08434.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3] gi|227186602|gb|EEI66673.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A] gi|300892737|gb|EFK86097.1| DNA-binding protein HU [Lactobacillus reuteri SD2112] gi|324978305|gb|EGC15255.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A] Length = 91 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 52/89 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+Q+ +R GR Sbjct: 3 NKAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FK LK + Sbjct: 63 NPQTGEEINIPASKVPAFKPGKALKDAVK 91 >gi|269138351|ref|YP_003295051.1| transcriptional regulator HU subunit beta [Edwardsiella tarda EIB202] gi|267984011|gb|ACY83840.1| transcriptional regulator HU subunit beta [Edwardsiella tarda EIB202] gi|304558383|gb|ADM41047.1| DNA-binding protein HU-beta [Edwardsiella tarda FL6-60] Length = 90 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I++ +S+ + R + + +S G+A+ + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQEGDAVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE+ I +V F+A LK + Sbjct: 61 RNPQTGQEIDIPAAKVPGFRAGKALKDAVN 90 >gi|134104523|pdb|2IIF|A Chain A, Single Chain Integration Host Factor Mutant Protein (Scihf2- K45ae) In Complex With Dna Length = 204 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 55/98 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++ + + + GLS++D+ V F EI + GE +++S F F ++ K R G Sbjct: 47 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVELSGFGNFDLRDKNQRPG 106 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 RN +T +++ I RRVV F+ LK R+ + G + Sbjct: 107 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GE I+I F +F + + R GRN +T +V+++ + V FK L+ R Sbjct: 141 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 192 >gi|315641242|ref|ZP_07896319.1| DNA-binding protein HU [Enterococcus italicus DSM 15952] gi|315483009|gb|EFU73528.1| DNA-binding protein HU [Enterococcus italicus DSM 15952] Length = 91 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L++ ++ L++KD+T V +F+ I ++ GE +++ F F V+ + R GR Sbjct: 3 NKAELIEKVAAATDLTKKDATLAVDAVFSSIQEALANGEKVQLIGFGNFEVRTRAERKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FK LK + Sbjct: 63 NPQTGEEIKIPASKVPAFKPGKALKDAVK 91 >gi|300703884|ref|YP_003745486.1| integration host factor (ihf) subunit alpha [Ralstonia solanacearum CFBP2957] gi|299071547|emb|CBJ42871.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum CFBP2957] Length = 140 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 38 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + Sbjct: 98 PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 133 >gi|296112837|ref|YP_003626775.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4] gi|295920531|gb|ADG60882.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4] gi|326561078|gb|EGE11443.1| DNA-binding protein HU-beta [Moraxella catarrhalis 7169] gi|326561504|gb|EGE11848.1| DNA-binding protein HU-beta [Moraxella catarrhalis 46P47B1] gi|326565372|gb|EGE15550.1| DNA-binding protein HU-beta [Moraxella catarrhalis 12P80B1] gi|326566699|gb|EGE16838.1| DNA-binding protein HU-beta [Moraxella catarrhalis 103P14B1] gi|326567537|gb|EGE17652.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC1] gi|326569385|gb|EGE19445.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC8] gi|326571416|gb|EGE21431.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC7] gi|326575302|gb|EGE25230.1| DNA-binding protein HU-beta [Moraxella catarrhalis CO72] gi|326576613|gb|EGE26520.1| DNA-binding protein HU-beta [Moraxella catarrhalis 101P30B1] gi|326577520|gb|EGE27400.1| DNA-binding protein HU-beta [Moraxella catarrhalis O35E] Length = 90 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI++ GL+++ + + V + + RG+ + + F TF VK++ +R+G Sbjct: 1 MNKSELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I +V FKA +LK+ + Sbjct: 61 RNPKTGEAIQIAASKVPSFKAGKVLKESVN 90 >gi|184155358|ref|YP_001843698.1| DNA-binding protein [Lactobacillus fermentum IFO 3956] gi|227515172|ref|ZP_03945221.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931] gi|260662129|ref|ZP_05863025.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|183226702|dbj|BAG27218.1| DNA-binding protein [Lactobacillus fermentum IFO 3956] gi|227086504|gb|EEI21816.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931] gi|260553512|gb|EEX26404.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 91 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++ GL++KD+T V +F+ I S +GE +++ F F V+++ +R GR Sbjct: 3 NKAELVTNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|54309795|ref|YP_130815.1| putative nucleoid DNA-binding protein [Photobacterium profundum SS9] gi|46914233|emb|CAG21013.1| putative bacterial nucleoid DNA-binding protein [Photobacterium profundum SS9] Length = 103 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + + + G+ + + F TF V+ + +R G Sbjct: 13 VNKTQLVDKIAESADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRDRAARTG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK + Sbjct: 73 RNPQTGEEIQIAAAKVPGFKPGKALKDSVN 102 >gi|304311293|ref|YP_003810891.1| Histone-like bacterial dna-binding protein [gamma proteobacterium HdN1] gi|301797026|emb|CBL45239.1| Histone-like bacterial dna-binding protein [gamma proteobacterium HdN1] Length = 91 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + ++R + + + D+ + E + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADIPKAQASRALDAVITSVTDALKKDEQVALVGFGTFSVKDRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I ++ FK LK + Sbjct: 61 RNPQTGETIDIPAAKIPSFKPGKALKDAVNG 91 >gi|134104519|pdb|2IIE|A Chain A, Single Chain Integration Host Factor Protein (Scihf2) In Complex With Dna Length = 204 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 55/98 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R G Sbjct: 47 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 106 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 RN +T +++ I RRVV F+ LK R+ + G + Sbjct: 107 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAGGGERI 144 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GE I+I F +F + + R GRN +T +V+++ + V FK L+ R Sbjct: 141 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 192 >gi|78045062|ref|YP_359077.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901] gi|77997177|gb|ABB16076.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901] Length = 89 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 58/89 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ +++KD+ + + + I ++ +GE +++ F TF V+++ +R G Sbjct: 1 MNKAELVSVIAEKAEMTKKDAEKALNAVLAAIEEALKKGEKVQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT QE++I +V VFK +LK++I Sbjct: 61 RNPQTGQEIEIPASKVPVFKPGKLLKEKI 89 >gi|291614191|ref|YP_003524348.1| integration host factor, subunit alpha [Sideroxydans lithotrophicus ES-1] gi|291584303|gb|ADE11961.1| integration host factor, alpha subunit [Sideroxydans lithotrophicus ES-1] Length = 102 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 55/96 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI +GE++K+S F F ++ K R Sbjct: 3 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRMQLEQGESVKLSGFGNFQLRDKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F S LK + + G Sbjct: 63 GRNPKTGEEIPITARRVVTFHPSQKLKSMVEKNYHG 98 >gi|104774450|ref|YP_619430.1| histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514550|ref|YP_813456.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300812638|ref|ZP_07093050.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|21633218|gb|AAM22481.1| HlbB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423531|emb|CAI98435.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093865|gb|ABJ59018.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300496368|gb|EFK31478.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325126261|gb|ADY85591.1| HlbB protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685672|gb|EGD27753.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 90 Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +S++ S+K+S + V LF I ++ +GE +++ F TF V+++ +R G Sbjct: 1 MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 90 >gi|332686553|ref|YP_004456327.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311] gi|332370562|dbj|BAK21518.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311] Length = 91 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++L+ +++ GLS+KD+T V +F I +S +GE +++ F F V+++ +R GR Sbjct: 3 NKAELIDNVASTTGLSKKDATSAVDAVFATIQESLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I+ +V FK LK + Sbjct: 63 NPQTGDEIQIEASKVPAFKPGKALKDAVK 91 >gi|299066592|emb|CBJ37782.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum CMR15] Length = 139 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 58/96 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 37 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 96 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + + Sbjct: 97 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 132 >gi|310642570|ref|YP_003947328.1| DNA-binding protein hu-alpha (histone-like protein) [Paenibacillus polymyxa SC2] gi|309247520|gb|ADO57087.1| DNA-binding protein HU-alpha (Histone-like protein) [Paenibacillus polymyxa SC2] Length = 91 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +S+ LS+KD T+ + +F I + G+ +++ F F V+++ +R G Sbjct: 2 LNKTDLINQVSESTELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I ++ FK LK I Sbjct: 62 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 91 >gi|116333426|ref|YP_794953.1| nucleoid DNA-binding protein [Lactobacillus brevis ATCC 367] gi|116098773|gb|ABJ63922.1| bacterial nucleoid protein Hbs [Lactobacillus brevis ATCC 367] Length = 91 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ LV ++ GL++KD+T V +F+ + + +GE +++ F F V+++ +R GR Sbjct: 3 NKAQLVSDVATATGLTKKDATAAVDAVFDSVQATLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT QE++I +V FK LK + Sbjct: 63 NPQTGQEIQIPASKVPAFKPGKALKDAVK 91 >gi|118586877|ref|ZP_01544311.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163] gi|118432709|gb|EAV39441.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163] Length = 107 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV S++K L++KD+T V +F+ I +GE +++ F F V+ + +R GR Sbjct: 19 NKQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGR 78 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 79 NPQTGAEIKIPASKVPAFKPGKALKDTVK 107 >gi|91776349|ref|YP_546105.1| integration host factor subunit alpha [Methylobacillus flagellatus KT] gi|123254152|sp|Q1GZS3|IHFA_METFK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91710336|gb|ABE50264.1| integration host factor, alpha subunit [Methylobacillus flagellatus KT] Length = 100 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 58/99 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL + ++ GL+++++ V F EI + G+++K+S F F ++QK R Sbjct: 2 TLTKADLADLLFEQVGLNKREAKDMVEAFFEEIRMALEAGDSVKLSGFGNFELRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +E+ I RRVV F AS LK ++ + G Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVEEAYAGAST 100 >gi|228994303|ref|ZP_04154194.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228765453|gb|EEM14116.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] Length = 93 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 60/92 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+KS+++ +S+K+++ V ++F+ I ++ G+ +++ F TF V+++ +R Sbjct: 2 KKMNKTELIKSVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 93 >gi|257092831|ref|YP_003166472.1| integration host factor subunit alpha [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045355|gb|ACV34543.1| integration host factor, alpha subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 100 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 57/99 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI ++ RG+ +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALERGDGVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +E+ I RRVV F AS LK + G + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGEVEHAYDGSES 100 >gi|71066029|ref|YP_264756.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus 273-4] gi|71039014|gb|AAZ19322.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus 273-4] Length = 90 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+++ GL++ + + + + ++ G++I + F TF VK + +R G Sbjct: 1 MNKSELIDSIAEKSGLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+ I + FKA LK+R+ Sbjct: 61 RNPKTGEELSIPASKAPSFKAGKNLKERLN 90 >gi|237809330|ref|YP_002893770.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] gi|237501591|gb|ACQ94184.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] Length = 91 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + +S+ + + + I S G+ +++ F TF V + SR G Sbjct: 1 MNKTELVDAIAAKADMSKAQAKVALEQILETITQSLKEGDPVQLVGFGTFKVNHRASRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT QE+ I V F A LK + Sbjct: 61 RNPQTGQEITIAASNVPTFVAGKALKDAVNG 91 >gi|207742952|ref|YP_002259344.1| integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum IPO1609] gi|206594347|emb|CAQ61274.1| probable integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum IPO1609] Length = 140 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 38 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + Sbjct: 98 PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 133 >gi|237747673|ref|ZP_04578153.1| integration host factor subunit alpha [Oxalobacter formigenes OXCC13] gi|229379035|gb|EEO29126.1| integration host factor subunit alpha [Oxalobacter formigenes OXCC13] Length = 129 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 60/97 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + ++ GL+++++ V T F EIC + RGEA+K+S F F ++ K Sbjct: 30 TSTLTKAELTELLYEQVGLNKREAKEMVETFFEEICGALERGEAVKLSGFGNFQLRDKPQ 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T +E+ I RRVV F AS LK + + Sbjct: 90 RPGRNPRTGEEIPITARRVVTFHASQKLKSMVESAEK 126 >gi|172057810|ref|YP_001814270.1| histone family protein DNA-binding protein [Exiguobacterium sibiricum 255-15] gi|171990331|gb|ACB61253.1| histone family protein DNA-binding protein [Exiguobacterium sibiricum 255-15] Length = 90 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++++ ++ GL++KD T+ V + F I ++ GE +++ F F V+++ +R G Sbjct: 1 MNKTELIQAVVEKSGLTKKDVTKVVESTFESITETLQSGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++++I +V FK LK + Sbjct: 61 RNPRTKEDIEIPASKVPAFKPGKALKDAVK 90 >gi|241663237|ref|YP_002981597.1| integration host factor subunit alpha [Ralstonia pickettii 12D] gi|240865264|gb|ACS62925.1| integration host factor, alpha subunit [Ralstonia pickettii 12D] Length = 138 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 58/96 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 36 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 95 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + + Sbjct: 96 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 131 >gi|187929051|ref|YP_001899538.1| integration host factor subunit alpha [Ralstonia pickettii 12J] gi|187725941|gb|ACD27106.1| integration host factor, alpha subunit [Ralstonia pickettii 12J] Length = 138 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 58/96 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 36 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 95 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + + Sbjct: 96 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 131 >gi|85703262|ref|ZP_01034366.1| integration host factor, alpha subunit [Roseovarius sp. 217] gi|85672190|gb|EAQ27047.1| integration host factor, alpha subunit [Roseovarius sp. 217] Length = 121 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 45/96 (46%), Positives = 69/96 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR D+ + V ++ + + D+ VRGE +KISSF TF V+ K +R Sbjct: 25 KTLTRMDLSEAVFREVGLSRNDAAQLVESVLDHMSDALVRGEQVKISSFGTFSVRDKTAR 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I+PRRV+ F+ S ++K R+ D + Sbjct: 85 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGTK 120 >gi|304319842|ref|YP_003853485.1| integration host factor subunit alpha [Parvularcula bermudensis HTCC2503] gi|303298745|gb|ADM08344.1| integration host factor alpha subunit [Parvularcula bermudensis HTCC2503] Length = 112 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 65/99 (65%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KT TR+DL ++ + GLSR++ + ++ +I GE +K+SSF TF +++K Sbjct: 1 MTKTHTRADLCDTVYENVGLSRQECGELIESVLEKIAQHLEEGEQVKLSSFGTFQIREKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R+GRN +T ++V I PRRV+ F+AS +LK R+ D +G Sbjct: 61 ERIGRNPKTGEQVAITPRRVLTFRASHVLKDRVDDGHKG 99 >gi|312621747|ref|YP_004023360.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202214|gb|ADQ45541.1| histone family protein DNA-binding protein [Caldicellulosiruptor kronotskyensis 2002] Length = 95 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 59/94 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +L+KSI+++ GL++KDS + + L I ++ +G+ +++ F TF VK++ R G Sbjct: 1 MSKEELIKSIAEKSGLTKKDSEKALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+ I V VFKA +LK+ + + Sbjct: 61 RNPQTGEEILIPATVVPVFKAGKVLKEAVSGPSK 94 >gi|300311300|ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae SmR1] gi|300074085|gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum seropedicae SmR1] Length = 104 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 60/92 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL+++++ V T F+EI ++ RGEA+K+S F F ++ K R Sbjct: 2 PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F AS LK+ + Sbjct: 62 PGRNPKTGEEIPITARRVVTFHASQKLKEMVE 93 >gi|207724057|ref|YP_002254455.1| integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum MolK2] gi|206589266|emb|CAQ36228.1| integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum MolK2] Length = 140 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 57/96 (59%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 38 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + Sbjct: 98 PGRNPKTGEIIPITARRVVTFHASQKLKALVEQRVE 133 >gi|229017681|ref|ZP_04174572.1| DNA-binding protein HU 1 [Bacillus cereus AH1273] gi|229023899|ref|ZP_04180382.1| DNA-binding protein HU 1 [Bacillus cereus AH1272] gi|229173057|ref|ZP_04300608.1| DNA-binding protein HU 1 [Bacillus cereus MM3] gi|228610390|gb|EEK67661.1| DNA-binding protein HU 1 [Bacillus cereus MM3] gi|228737412|gb|EEL87924.1| DNA-binding protein HU 1 [Bacillus cereus AH1272] gi|228743607|gb|EEL93716.1| DNA-binding protein HU 1 [Bacillus cereus AH1273] Length = 90 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVK++++ +S+K+++ V ++F+ I + G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELVKNVAQSADISQKEASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90 >gi|228997443|ref|ZP_04157062.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|229005088|ref|ZP_04162812.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228756190|gb|EEM05511.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228762319|gb|EEM11246.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] Length = 93 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 60/92 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K+++ V ++F+ I ++ G+ +++ F TF V+++ +R Sbjct: 2 KKMNKTELIKNVAQTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 93 >gi|134297994|ref|YP_001111490.1| histone family protein DNA-binding protein [Desulfotomaculum reducens MI-1] gi|134050694|gb|ABO48665.1| bacterial nucleoid protein Hbs [Desulfotomaculum reducens MI-1] Length = 95 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V+ + I ++ +G+ I++ F TF K + +R G Sbjct: 1 MNKAELISAVAEKTELSKKDAEKAVSAVLGSIEEALAKGDKIQLVGFGTFESKPRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I RV VFKA +LK + + Sbjct: 61 RNPQTGDTIQIPATRVPVFKAGKVLKDAVAN 91 >gi|329894936|ref|ZP_08270735.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088] gi|328922665|gb|EGG30000.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088] Length = 91 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + R + + I + +G+++ + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADISKASAGRALDAVVESITGALQKGDSVSLVGFGTFQVKPRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V FKA LK + Sbjct: 61 RNPQTGAEIQIAAANVPGFKAGKALKDAVN 90 >gi|83720646|ref|YP_443105.1| integration host factor subunit alpha [Burkholderia thailandensis E264] gi|167582112|ref|ZP_02374986.1| integration host factor subunit alpha [Burkholderia thailandensis TXDOH] gi|167620270|ref|ZP_02388901.1| integration host factor subunit alpha [Burkholderia thailandensis Bt4] gi|257139334|ref|ZP_05587596.1| integration host factor subunit alpha [Burkholderia thailandensis E264] gi|83654471|gb|ABC38534.1| integration host factor, alpha subunit [Burkholderia thailandensis E264] Length = 134 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|326692493|ref|ZP_08229498.1| nucleoid DNA-binding protein [Leuconostoc argentinum KCTC 3773] Length = 91 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV S++K GL++KD+T V +F I ++ GE +++ F F V+ + +R GR Sbjct: 3 NKQELVDSVAKATGLTKKDATAAVDAVFTSIEEALKNGEKVQLIGFGNFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK+ + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91 >gi|304315774|ref|YP_003850919.1| histone family protein DNA-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777276|gb|ADL67835.1| histone family protein DNA-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 91 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + + ++ +G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKALKDLVN 90 >gi|153004748|ref|YP_001379073.1| integration host factor subunit alpha [Anaeromyxobacter sp. Fw109-5] gi|166918497|sp|A7HBJ3|IHFA_ANADF RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|152028321|gb|ABS26089.1| integration host factor, alpha subunit [Anaeromyxobacter sp. Fw109-5] Length = 99 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 62/90 (68%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++S+ ++ G S+K++ V +F+ I ++ RGE IKIS F F V++K SRVG Sbjct: 1 MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVREKKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I RRV+ F+ S +LK + Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALN 90 >gi|313894803|ref|ZP_07828363.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str. F0430] gi|320530142|ref|ZP_08031212.1| putative integration host factor, beta subunit [Selenomonas artemidis F0399] gi|312976484|gb|EFR41939.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str. F0430] gi|320137575|gb|EFW29487.1| putative integration host factor, beta subunit [Selenomonas artemidis F0399] Length = 90 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ L++KD+ + V +F I + G+ +++ F TF VK + +R G Sbjct: 1 MNKQELVANVAEQANLTKKDAEKAVNAIFETIKGALSEGDRVQLIGFGTFEVKARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+ I + VFKA LK + Sbjct: 61 RNPRTGKEINIPASKTPVFKAGKALKDSVN 90 >gi|302878344|ref|YP_003846908.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] gi|302581133|gb|ADL55144.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] Length = 103 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 55/99 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T+T+++L + + GL+++++ V T F EI +GE++K+S F F ++ K Sbjct: 1 MITTLTKAELADLLFAKVGLNKREAKDMVETFFEEIRVQLEQGESVKLSGFGNFQLRDKP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T +E+ I RRVV F S LK + G Sbjct: 61 QRPGRNPKTGKEIPISARRVVTFHPSQKLKTLVEKSYHG 99 >gi|308066881|ref|YP_003868486.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus polymyxa E681] gi|310639519|ref|YP_003944277.1| DNA-binding protein hu-alpha (histone-like protein) [Paenibacillus polymyxa SC2] gi|305856160|gb|ADM67948.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus polymyxa E681] gi|309244469|gb|ADO54036.1| DNA-binding protein HU-alpha (Histone-like protein) [Paenibacillus polymyxa SC2] Length = 90 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +IS + GLS++D + + EI D+ G+ +++ F TF +++ SR G Sbjct: 1 MNKTDLINNISSKSGLSKRDVEAVLNGVLGEITDALASGDKVQLIGFGTFETRKRSSRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I V FKA + LK+ + Sbjct: 61 RNPQTGNTIEIPESTVPAFKAGNKLKEAVN 90 >gi|167562961|ref|ZP_02355877.1| integration host factor subunit alpha [Burkholderia oklahomensis EO147] gi|167570150|ref|ZP_02363024.1| integration host factor subunit alpha [Burkholderia oklahomensis C6786] Length = 134 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|42519018|ref|NP_964948.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533] gi|227889872|ref|ZP_04007677.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200] gi|268319592|ref|YP_003293248.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785] gi|41583305|gb|AAS08914.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533] gi|227849736|gb|EEJ59822.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200] gi|262397967|emb|CAX66981.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785] gi|329667447|gb|AEB93395.1| DNA-binding protein HU [Lactobacillus johnsonii DPC 6026] Length = 91 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V +FN I + +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVAAKTDLTKKEVAAAVDAIFNSIQEDLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91 >gi|228949548|ref|ZP_04111797.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810128|gb|EEM56500.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 90 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +S++ L++KD+T V + ++I S + E++++ F TF V+++ +R G Sbjct: 1 MNKTELINQVSEKTSLTKKDATASVQAVLDQITQSLQKDESVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + FKA LK+ + Sbjct: 61 RNPQTGEEMHIPGGKAPAFKAGKALKEAVK 90 >gi|319943681|ref|ZP_08017962.1| integration host factor subunit alpha [Lautropia mirabilis ATCC 51599] gi|319742914|gb|EFV95320.1| integration host factor subunit alpha [Lautropia mirabilis ATCC 51599] Length = 141 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 61/109 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ L + + GL+++++ V T F EI + +RGE++K+S F F ++ K R Sbjct: 29 TLTKAALADMLFERVGLNKREAKDMVETFFEEISAALIRGESVKLSGFGNFQLRDKQQRP 88 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 GRN +T +E+ I RRVV F AS LK +I R + + SG Sbjct: 89 GRNPKTGEEIPISARRVVTFHASQKLKAQIEAPHRPAAALPLNAGAISG 137 >gi|116629549|ref|YP_814721.1| nucleoid DNA-binding protein [Lactobacillus gasseri ATCC 33323] gi|238852699|ref|ZP_04643109.1| DNA-binding protein HU [Lactobacillus gasseri 202-4] gi|282852068|ref|ZP_06261426.1| DNA-binding protein HU [Lactobacillus gasseri 224-1] gi|300361578|ref|ZP_07057755.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03] gi|311110808|ref|ZP_07712205.1| DNA-binding protein HU [Lactobacillus gasseri MV-22] gi|116095131|gb|ABJ60283.1| bacterial nucleoid protein Hbs [Lactobacillus gasseri ATCC 33323] gi|238834845|gb|EEQ27072.1| DNA-binding protein HU [Lactobacillus gasseri 202-4] gi|282556828|gb|EFB62432.1| DNA-binding protein HU [Lactobacillus gasseri 224-1] gi|300354197|gb|EFJ70068.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03] gi|311065962|gb|EFQ46302.1| DNA-binding protein HU [Lactobacillus gasseri MV-22] Length = 91 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V +F+ I + +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVAAKTDLTKKEVAAAVDAIFSSIQEDLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91 >gi|53805229|ref|YP_113051.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath] gi|53758990|gb|AAU93281.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath] Length = 90 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++I+ L++ D+ R + + + I D+ +G+ + + F +F VK++ R G Sbjct: 1 MNKAELIEAIADAANLTKADAGRALDAVIDAITDALKKGDTVSLVGFGSFAVKERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + I ++ FK LK + Sbjct: 61 RNPQTGDSITIKAAKIPSFKCGKALKDAVN 90 >gi|83588958|ref|YP_428967.1| nucleoid protein Hbs [Moorella thermoacetica ATCC 39073] gi|83571872|gb|ABC18424.1| bacterial nucleoid protein Hbs [Moorella thermoacetica ATCC 39073] Length = 91 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ S++++ L++KD+ + V + I ++ +GE +++ F TF +K++ +RVG Sbjct: 1 MNKMDLIASVAEKTDLTKKDAEKVVNAVLASIEEALAQGEKVQLVGFGTFEIKERAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I R VFKA LK + Sbjct: 61 RNPRTGEEIQIAATRAPVFKAGKALKDAVA 90 >gi|317120952|ref|YP_004100955.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM 12885] gi|315590932|gb|ADU50228.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM 12885] Length = 90 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+++ GL+RKDS + V I ++ +GE + + F TF V+ + +R G Sbjct: 1 MNKPELVNAIAEKTGLNRKDSEKAVNAFVESISEALAKGEKVSLVGFGTFEVRTRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T Q + I +V FK L++ + Sbjct: 61 RNPRTGQTLTIPAAKVPAFKPGKQLREVVK 90 >gi|313124300|ref|YP_004034559.1| DNA-binding protein hu-alpha (histone-like protein) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280863|gb|ADQ61582.1| DNA-binding protein HU-alpha (Histone-like protein) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 90 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +S++ S+K+S + V LF I ++ +GE +++ F TF ++++ +R G Sbjct: 1 MNKTELVSVVSEKTEFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEIRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 90 >gi|77165249|ref|YP_343774.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|254433630|ref|ZP_05047138.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|300114007|ref|YP_003760582.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] gi|76883563|gb|ABA58244.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|207089963|gb|EDZ67234.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|299539944|gb|ADJ28261.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] Length = 90 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ L++ + R V ++ + D+ RG+ + I F TF V+ + +R G Sbjct: 1 MNKSELIESVADAGNLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGEEIKIKASKMPSFKAGKALKDAVN 90 >gi|256822926|ref|YP_003146889.1| integration host factor subunit alpha [Kangiella koreensis DSM 16069] gi|256796465|gb|ACV27121.1| integration host factor, alpha subunit [Kangiella koreensis DSM 16069] Length = 100 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL++++S V F +I D+ G +K+S F F ++ K R Sbjct: 2 ALTKADMAERLYEELGLNKRESKEIVEAFFEQIRDALEDGYNVKLSGFGNFELRDKAQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +EV I RRVV FK L+ ++ D + + Sbjct: 62 GRNPKTGEEVPISARRVVTFKPGQKLRGKVADYVGTEQ 99 >gi|300691321|ref|YP_003752316.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum PSI07] gi|299078381|emb|CBJ51031.1| integration host factor (IHF), alpha subunit [Ralstonia solanacearum PSI07] Length = 135 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 58/96 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V FN I ++ +G+++K+S F F ++ K R Sbjct: 33 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFNVIREALEQGDSVKLSGFGNFQLRDKPQR 92 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + + Sbjct: 93 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 128 >gi|154253667|ref|YP_001414491.1| histone family DNA-binding protein [Parvibaculum lavamentivorans DS-1] gi|154157617|gb|ABS64834.1| histone family protein DNA-binding protein [Parvibaculum lavamentivorans DS-1] Length = 91 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ GLS+ D+T+ V +F+ I DS +GE +++ F TF+V + + G Sbjct: 1 MNKNDLIAEVADRSGLSKADATKAVDYVFDIITDSLKKGEEVRLVGFGTFNVSNRAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKQPKFKAGKGLKDAVN 90 >gi|292669443|ref|ZP_06602869.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541] gi|292648896|gb|EFF66868.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541] Length = 111 Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 55/91 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +LV +++++ GL++KD+ + V +F + + +G+ I++ F TF VK + +R Sbjct: 21 TLNKQELVANVAEQAGLTKKDAEKAVNAVFETVKGALSKGDKIQLIGFGTFEVKARKARK 80 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E+ I + VFKA LK + Sbjct: 81 GRNPQTGKEINIPASKNPVFKAGKALKDSVN 111 >gi|167836846|ref|ZP_02463729.1| integration host factor subunit alpha [Burkholderia thailandensis MSMB43] Length = 134 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|167036676|ref|YP_001664254.1| histone family protein DNA-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039345|ref|YP_001662330.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X514] gi|256752345|ref|ZP_05493206.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913985|ref|ZP_07131302.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X561] gi|307725332|ref|YP_003905083.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X513] gi|320115103|ref|YP_004185262.1| histone family protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853585|gb|ABY91994.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X514] gi|166855510|gb|ABY93918.1| histone family protein DNA-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748756|gb|EEU61799.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300890670|gb|EFK85815.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X561] gi|307582393|gb|ADN55792.1| histone family protein DNA-binding protein [Thermoanaerobacter sp. X513] gi|319928194|gb|ADV78879.1| histone family protein DNA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 91 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + +FKA LK + Sbjct: 61 RNPQTKEEITIPASKAPIFKAGKALKDLVN 90 >gi|309782533|ref|ZP_07677256.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA] gi|308918624|gb|EFP64298.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA] Length = 138 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 58/96 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 36 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 95 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + + Sbjct: 96 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 131 >gi|194333137|ref|YP_002014997.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] gi|194310955|gb|ACF45350.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] Length = 94 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V + + + DS GE + + F TF V ++ R G Sbjct: 4 MSKAELVEKIASQAGLTKADAERAVNSFVSVVTDSLKAGEDVTLVGFGTFSVGERAERQG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I R+ V FK LK+ + Sbjct: 64 RNPQTGETITIAARKAVKFKPGKALKEEV 92 >gi|329666305|pdb|3RHI|A Chain A, Dna-Binding Protein Hu From Bacillus Anthracis gi|329666306|pdb|3RHI|B Chain B, Dna-Binding Protein Hu From Bacillus Anthracis gi|329666307|pdb|3RHI|C Chain C, Dna-Binding Protein Hu From Bacillus Anthracis gi|329666308|pdb|3RHI|D Chain D, Dna-Binding Protein Hu From Bacillus Anthracis Length = 93 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 58/93 (62%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ + Sbjct: 1 SNAMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT +E++I +V FKA LK+ + Sbjct: 61 RTGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93 >gi|89073233|ref|ZP_01159763.1| putative bacterial nucleoid DNA-binding protein [Photobacterium sp. SKA34] gi|90579275|ref|ZP_01235085.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum S14] gi|89050943|gb|EAR56407.1| putative bacterial nucleoid DNA-binding protein [Photobacterium sp. SKA34] gi|90440108|gb|EAS65289.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum S14] Length = 90 Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + D+ GE + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAESADISKASAGRALDAFIEAVSDTLKDGEQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSVN 90 >gi|304437105|ref|ZP_07397068.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370056|gb|EFM23718.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 100 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +LV +++++ L++KD+ + V LF I + G+ I++ F TF VK + +R Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKIQLIGFGTFEVKDRAARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I R VFKA LK + Sbjct: 70 GRNPQTGKEIEIAASRNPVFKAGKALKDAVN 100 >gi|311694258|gb|ADP97131.1| integration host factor, beta subunit [marine bacterium HP15] Length = 98 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+ K+ LS KD V T+ + S G+ I+I F +F + + +R Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++ + V FK L++++ D ++ Sbjct: 61 GRNPKTGEAVQLPAKYVPHFKPGKELREQVNDSLK 95 >gi|20808810|ref|NP_623981.1| nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis MB4] gi|20517460|gb|AAM25585.1| Bacterial nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis MB4] Length = 91 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKAELVAKIAEKSELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + +FKA LK + Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALKDLVN 90 >gi|209964628|ref|YP_002297543.1| integration host factor subunit alpha [Rhodospirillum centenum SW] gi|209958094|gb|ACI98730.1| integration host factor, alpha subunit [Rhodospirillum centenum SW] Length = 106 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 46/97 (47%), Positives = 70/97 (72%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+TR+ L +++ +E GLSR +S V ++ +EI D+ RG+ +KISSF +F V+ KG Sbjct: 1 MANTVTRAQLSEAVYQEVGLSRNESADLVESVLDEISDALARGDMVKISSFGSFSVRAKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T +EV I PRRV+VF+AS +LK RI + + Sbjct: 61 QRIGRNPKTGEEVPILPRRVLVFRASHVLKNRINEGL 97 >gi|154498745|ref|ZP_02037123.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC 29799] gi|150272135|gb|EDM99339.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC 29799] Length = 91 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ + +++ GLS+KD+ + + I + G+ I++ F +F VK + +R+G Sbjct: 1 MNKAELINAAAEKAGLSKKDTENALNAALDVIAAALAEGDKIQLVGFGSFEVKSRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I +V VFK LK + Sbjct: 61 RNPKTKEEITIPASKVPVFKPGKALKDAVAQ 91 >gi|83593003|ref|YP_426755.1| integration host factor, subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|123739530|sp|Q2RTS7|IHFA_RHORT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|83575917|gb|ABC22468.1| Integration host factor, alpha subunit [Rhodospirillum rubrum ATCC 11170] Length = 105 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 48/102 (47%), Positives = 70/102 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KTITR+ L +++ +E GLSR +S + + NE+ ++ V G+ +KISSF +F V++KG Sbjct: 3 GKTITRAQLSEAVYQEVGLSRNESADLLEMVLNEMSEALVEGDTVKISSFGSFSVREKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RVGRN +T +EV I PRRV+VF+ S +LK RI D G + N Sbjct: 63 RVGRNPKTGEEVPILPRRVLVFRPSQLLKARINDGAVGSQIN 104 >gi|116618389|ref|YP_818760.1| nucleoid protein Hbs [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227431692|ref|ZP_03913722.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116097236|gb|ABJ62387.1| bacterial nucleoid protein Hbs [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352516|gb|EEJ42712.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 91 Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV S++K GL++KD+T V +F I ++ GE +++ F F V+ + +R GR Sbjct: 3 NKQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 63 NPQTGEEIQIAASKVPAFKPGKALKDAVK 91 >gi|77360983|ref|YP_340558.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875894|emb|CAI87115.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas haloplanktis TAC125] Length = 90 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + + G+++ + F TF V+ + +R G Sbjct: 1 MNKSQLIDQIAADADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTFSVRDRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAVN 90 >gi|269103657|ref|ZP_06156354.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp. damselae CIP 102761] gi|268163555|gb|EEZ42051.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp. damselae CIP 102761] Length = 90 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKAALEATLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V F A LK + Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDSVK 90 >gi|289579291|ref|YP_003477918.1| histone family protein DNA-binding protein [Thermoanaerobacter italicus Ab9] gi|297545442|ref|YP_003677744.1| histone family protein DNA-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|307264995|ref|ZP_07546556.1| histone family protein DNA-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326390096|ref|ZP_08211658.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus JW 200] gi|289529004|gb|ADD03356.1| histone family protein DNA-binding protein [Thermoanaerobacter italicus Ab9] gi|296843217|gb|ADH61733.1| histone family protein DNA-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|306919980|gb|EFN50193.1| histone family protein DNA-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325993961|gb|EGD52391.1| histone family protein DNA-binding protein [Thermoanaerobacter ethanolicus JW 200] Length = 91 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVAKIAEKSELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + +FKA LK + Sbjct: 61 RNPQTREEITIPASKAPIFKAGKALKDLVN 90 >gi|238027725|ref|YP_002911956.1| integration host factor subunit alpha [Burkholderia glumae BGR1] gi|237876919|gb|ACR29252.1| Integration host factor alpha subunit [Burkholderia glumae BGR1] Length = 133 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126 >gi|224826508|ref|ZP_03699609.1| integration host factor, alpha subunit [Lutiella nitroferrum 2002] gi|224601109|gb|EEG07291.1| integration host factor, alpha subunit [Lutiella nitroferrum 2002] Length = 98 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + GL+++++ V + F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFDKVGLNKREAKDMVESFFEEIRQALESGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +E+ I RRVV F AS LK + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGMVEQHHANN 98 >gi|149926883|ref|ZP_01915142.1| Integration host factor, alpha subunit [Limnobacter sp. MED105] gi|149824435|gb|EDM83653.1| Integration host factor, alpha subunit [Limnobacter sp. MED105] Length = 122 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 55/93 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S ++T+++L + + GL+++++ FV F+EI + G+++K+S F F ++ K Sbjct: 30 SGSLTKAELAEMLFDSLGLNKREAKDFVDAFFDEIRTTLESGDSVKLSGFGNFQLRDKPQ 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +E+ I RRVV F S LK + Sbjct: 90 RPGRNPKTGEEIPIAARRVVTFHPSQKLKALVE 122 >gi|68249030|ref|YP_248142.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP] gi|68057229|gb|AAX87482.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP] Length = 136 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 45 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT E++I +V F + LK I Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 136 >gi|87122323|ref|ZP_01078205.1| Integration host factor alpha subunit [Marinomonas sp. MED121] gi|86162466|gb|EAQ63749.1| Integration host factor alpha subunit [Marinomonas sp. MED121] Length = 98 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 60/95 (63%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ E GLS+KDS V + F+ I ++ ++GE +K+S F F V++K R Sbjct: 3 ALTKADIAENLVDEVGLSKKDSKDLVESFFDVIRETLIQGEQVKLSGFGNFEVREKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I R VV F+ LK ++ + M+ Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVENYMQ 97 >gi|226312045|ref|YP_002771939.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599] gi|226094993|dbj|BAH43435.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599] Length = 90 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ L++KD+T+ V + + I D+ G+ +++ F F V+++ +R G Sbjct: 1 MNKTELIAKVAETTELTKKDATKAVDAVLDAIADALKTGDKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FK LK I Sbjct: 61 RNPQTGEEIEIASSKVPAFKPGKQLKDSIK 90 >gi|169830293|ref|YP_001716275.1| histone family protein DNA-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|169637137|gb|ACA58643.1| histone family protein DNA-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 91 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + ++ + I ++ G+ +++ F TF +++ +R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V VFKA L++ + Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >gi|315127186|ref|YP_004069189.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315015700|gb|ADT69038.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 90 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + + G+++ + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGETIQIAAANIPAFKAGKALKDAVN 90 >gi|89075365|ref|ZP_01161787.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34] gi|90581302|ref|ZP_01237099.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14] gi|89048914|gb|EAR54483.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34] gi|90437541|gb|EAS62735.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14] Length = 90 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V F A LK + Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDALK 90 >gi|307945252|ref|ZP_07660588.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4] gi|307771125|gb|EFO30350.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4] Length = 104 Score = 136 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 48/99 (48%), Positives = 72/99 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TITR+DL +++ ++ GLSR +S+ V + EI D V GE++K+SSF +F V+ KG Sbjct: 3 GRTITRADLCEAVYQKVGLSRTESSELVERVLAEISDCLVTGESVKLSSFGSFVVRSKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 R+GRN +T +EV I PRRV+VFK S++LK+RI D + G+ Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDSLTGK 101 >gi|255659240|ref|ZP_05404649.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544] gi|260848694|gb|EEX68701.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544] Length = 91 Score = 136 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S++++ GL++KD+ + V +F I + V G+ +++ F TF VK++ +R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+ ++I + FKA LK + Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90 >gi|331005201|ref|ZP_08328595.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989] gi|330420983|gb|EGG95255.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989] Length = 91 Score = 136 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + R + + I + G+ + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVLETIESTLKNGDPVTLVGFGTFSVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I ++ FKA LK + Sbjct: 61 RNPQTGAPIQIAAAKIPGFKAGKSLKDAVN 90 >gi|237653680|ref|YP_002889994.1| integration host factor subunit alpha [Thauera sp. MZ1T] gi|237624927|gb|ACR01617.1| integration host factor, alpha subunit [Thauera sp. MZ1T] Length = 101 Score = 136 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 56/100 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI + RG+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEQVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T +E+ I RRVV F AS LK + K Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP 101 >gi|53725309|ref|YP_102781.1| integration host factor subunit alpha [Burkholderia mallei ATCC 23344] gi|121600745|ref|YP_992860.1| integration host factor subunit alpha [Burkholderia mallei SAVP1] gi|124384579|ref|YP_001026200.1| integration host factor subunit alpha [Burkholderia mallei NCTC 10229] gi|126450691|ref|YP_001080530.1| integration host factor subunit alpha [Burkholderia mallei NCTC 10247] gi|134282277|ref|ZP_01768982.1| integration host factor alpha subunit [Burkholderia pseudomallei 305] gi|167003084|ref|ZP_02268874.1| integration host factor alpha subunit [Burkholderia mallei PRL-20] gi|167719842|ref|ZP_02403078.1| integration host factor subunit alpha [Burkholderia pseudomallei DM98] gi|167824439|ref|ZP_02455910.1| integration host factor subunit alpha [Burkholderia pseudomallei 9] gi|167902953|ref|ZP_02490158.1| integration host factor subunit alpha [Burkholderia pseudomallei NCTC 13177] gi|217423737|ref|ZP_03455238.1| integration host factor alpha subunit [Burkholderia pseudomallei 576] gi|237812022|ref|YP_002896473.1| integration host factor, alpha subunit [Burkholderia pseudomallei MSHR346] gi|238562599|ref|ZP_00440142.2| integration host factor, alpha subunit [Burkholderia mallei GB8 horse 4] gi|254179998|ref|ZP_04886597.1| integration host factor alpha subunit [Burkholderia pseudomallei 1655] gi|254197506|ref|ZP_04903928.1| integration host factor alpha subunit [Burkholderia pseudomallei S13] gi|254199733|ref|ZP_04906099.1| integration host factor alpha subunit [Burkholderia mallei FMH] gi|254206055|ref|ZP_04912407.1| integration host factor alpha subunit [Burkholderia mallei JHU] gi|254358426|ref|ZP_04974699.1| integration host factor alpha subunit [Burkholderia mallei 2002721280] gi|52428732|gb|AAU49325.1| integration host factor, alpha subunit [Burkholderia mallei ATCC 23344] gi|121229555|gb|ABM52073.1| integration host factor, alpha subunit [Burkholderia mallei SAVP1] gi|124292599|gb|ABN01868.1| integration host factor, alpha subunit [Burkholderia mallei NCTC 10229] gi|126243561|gb|ABO06654.1| integration host factor alpha subunit [Burkholderia mallei NCTC 10247] gi|134246315|gb|EBA46404.1| integration host factor alpha subunit [Burkholderia pseudomallei 305] gi|147749329|gb|EDK56403.1| integration host factor alpha subunit [Burkholderia mallei FMH] gi|147753498|gb|EDK60563.1| integration host factor alpha subunit [Burkholderia mallei JHU] gi|148027553|gb|EDK85574.1| integration host factor alpha subunit [Burkholderia mallei 2002721280] gi|169654247|gb|EDS86940.1| integration host factor alpha subunit [Burkholderia pseudomallei S13] gi|184210538|gb|EDU07581.1| integration host factor alpha subunit [Burkholderia pseudomallei 1655] gi|217393595|gb|EEC33616.1| integration host factor alpha subunit [Burkholderia pseudomallei 576] gi|237505242|gb|ACQ97560.1| integration host factor, alpha subunit [Burkholderia pseudomallei MSHR346] gi|238522284|gb|EEP85729.1| integration host factor, alpha subunit [Burkholderia mallei GB8 horse 4] gi|243061335|gb|EES43521.1| integration host factor alpha subunit [Burkholderia mallei PRL-20] Length = 134 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|94310111|ref|YP_583321.1| integration host factor subunit alpha [Cupriavidus metallidurans CH34] gi|93353963|gb|ABF08052.1| integration host factor, alpha subunit 1 (IHF-alpha 1) [Cupriavidus metallidurans CH34] Length = 136 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 57/93 (61%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + + GL++++S V F+ I ++ RG+++K+S F F ++ K R Sbjct: 38 PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALERGDSVKLSGFGNFQLRDKAQR 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F AS LK ++ + Sbjct: 98 PGRNPKTGEIIPITARRVVTFHASQKLKAQVEE 130 >gi|330444951|ref|ZP_08308605.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493069|dbj|GAA03102.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 90 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKAALESTLDGITDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V F A LK + Sbjct: 61 RNPQTGAEIQIAAANVPAFVAGKALKDALK 90 >gi|330446590|ref|ZP_08310242.1| putative bacterial nucleoid DNA-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490781|dbj|GAA04739.1| putative bacterial nucleoid DNA-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 90 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAESADISKASAGRALDAFIEAVSETLKDGDQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIQIAAAKVPGFKPGKALKDSVN 90 >gi|295696966|ref|YP_003590204.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] gi|295412568|gb|ADG07060.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] Length = 92 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 55/92 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ ++++ GL++K ++ V + + I ++ GE++ ++ F +F V+++ +R G Sbjct: 1 MTKQDLIAKVAEKSGLTKKAASAAVDAVLDTIQEALQAGESVGLTGFGSFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + ++I + VF+ LK+ + Sbjct: 61 RNPQTGETIEIAGGKTPVFRPGKTLKEAVKSA 92 >gi|330816675|ref|YP_004360380.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3] gi|327369068|gb|AEA60424.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3] Length = 133 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126 >gi|126438744|ref|YP_001058758.1| integration host factor subunit alpha [Burkholderia pseudomallei 668] gi|126218237|gb|ABN81743.1| integration host factor alpha subunit [Burkholderia pseudomallei 668] Length = 134 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|269102132|ref|ZP_06154829.1| DNA-binding protein HU-beta [Photobacterium damselae subsp. damselae CIP 102761] gi|268162030|gb|EEZ40526.1| DNA-binding protein HU-beta [Photobacterium damselae subsp. damselae CIP 102761] Length = 90 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I++ +S+ + R + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKTQLVDKIAENADISKASAGRALDAFIEAVSDTLKSGDQVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIAAAKVPGFKAGKALKDSVN 90 >gi|329296785|ref|ZP_08254121.1| transcriptional regulator HU subunit beta [Plautia stali symbiont] Length = 90 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKDGDEVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F++ LK + Sbjct: 61 RNPQTGKEITIPAGKVPGFRSGKALKDAVN 90 >gi|209516669|ref|ZP_03265522.1| integration host factor, alpha subunit [Burkholderia sp. H160] gi|295677042|ref|YP_003605566.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002] gi|209502944|gb|EEA02947.1| integration host factor, alpha subunit [Burkholderia sp. H160] gi|295436885|gb|ADG16055.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002] Length = 136 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132 >gi|239831603|ref|ZP_04679932.1| integration host factor, alpha subunit [Ochrobactrum intermedium LMG 3301] gi|239823870|gb|EEQ95438.1| integration host factor, alpha subunit [Ochrobactrum intermedium LMG 3301] Length = 132 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 74/104 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 28 GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 87 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 88 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKREAKSQ 131 >gi|300715594|ref|YP_003740397.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661] gi|299061430|emb|CAX58542.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661] Length = 90 Score = 136 bits (345), Expect = 7e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + DS G+ + + F TF V+++ R G Sbjct: 1 MNKSQLIDKIAASADISKAAAGRVLDAFMGSVSDSLKEGDEVALVGFGTFSVRERSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 90 >gi|296131726|ref|YP_003638973.1| histone family protein DNA-binding protein [Thermincola sp. JR] gi|296030304|gb|ADG81072.1| histone family protein DNA-binding protein [Thermincola potens JR] Length = 90 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 56/89 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV S++++ GL++KD+ + V+ +F I ++ +G+ +++ F TF V+++ +R G Sbjct: 1 MNKQDLVSSVAEKAGLTKKDADKAVSAVFASIEEALAKGDKVQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGAVIEIAAAKVPAFKAGKALKDAV 89 >gi|167816064|ref|ZP_02447744.1| integration host factor subunit alpha [Burkholderia pseudomallei 91] Length = 134 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|253576875|ref|ZP_04854200.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843742|gb|EES71765.1| histone family protein DNA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 90 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +IS + GL++KD + EI D+ G+ +++ F TF +++ R G Sbjct: 1 MNKTDLINNISSKSGLTKKDVESVLNGFLGEITDALASGDKVQLIGFGTFETRKRSGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I V FKA + LK+ + Sbjct: 61 RNPQTGKTIEIPASTVPAFKAGNKLKEAVK 90 >gi|34496809|ref|NP_901024.1| integration host factor subunit alpha [Chromobacterium violaceum ATCC 12472] gi|81711870|sp|Q7NYC0|IHFA_CHRVO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|34102664|gb|AAQ59029.1| integration host factor alpha-subunit [Chromobacterium violaceum ATCC 12472] Length = 100 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + GL+++++ V + F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFDQVGLNKREAKDMVESFFEEIRLALESGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F AS LK + ++ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGMVEQYHANKQ 99 >gi|332532267|ref|ZP_08408148.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] gi|332038365|gb|EGI74810.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] Length = 90 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + + G+++ + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAADADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGETIQIAAATIPAFKAGKALKDAVN 90 >gi|292493201|ref|YP_003528640.1| integration host factor, subunit alpha [Nitrosococcus halophilus Nc4] gi|291581796|gb|ADE16253.1| integration host factor, alpha subunit [Nitrosococcus halophilus Nc4] Length = 100 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 59/98 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ +E GL+++++ V F +I + RGE +K+S F F ++ KG R Sbjct: 2 ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALERGETVKLSGFGNFELRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK R+ G++ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGGKQ 99 >gi|115375494|ref|ZP_01462754.1| integration host factor, alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|310821386|ref|YP_003953744.1| integration host factor subunit alpha [Stigmatella aurantiaca DW4/3-1] gi|115367537|gb|EAU66512.1| integration host factor, alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|309394458|gb|ADO71917.1| Integration host factor subunit alpha [Stigmatella aurantiaca DW4/3-1] Length = 134 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 36/103 (34%), Positives = 64/103 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++ + ++ G S+K+S V +F+ + ++ RG+ IKIS F F V+QK +RVG Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN QT +E++I RRV+ F+ S +LK + + + D Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAPPENHAEIDA 103 >gi|86158392|ref|YP_465177.1| integration host factor subunit alpha [Anaeromyxobacter dehalogenans 2CP-C] gi|123723043|sp|Q2IJA7|IHFA_ANADE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|85774903|gb|ABC81740.1| integration host factor, alpha subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 113 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 62/93 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++S+ ++ G S+K++ V +F+ I ++ RGE IKIS F F V+ K SRVG Sbjct: 1 MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN QT +E++I RRV+ F+ S +LK + + Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALNGGV 93 >gi|197122315|ref|YP_002134266.1| integration host factor subunit alpha [Anaeromyxobacter sp. K] gi|220917097|ref|YP_002492401.1| integration host factor, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|226707369|sp|B4UAP1|IHFA_ANASK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803509|sp|B8J836|IHFA_ANAD2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|196172164|gb|ACG73137.1| integration host factor, alpha subunit [Anaeromyxobacter sp. K] gi|219954951|gb|ACL65335.1| integration host factor, alpha subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 113 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 63/93 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++S+ ++ G S+K++ V +F+ I ++ RGE IKIS F F V+ K SRVG Sbjct: 1 MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN QT +E++I RRV+ F+ S +LK + ++ Sbjct: 61 RNPQTGEEIEISARRVLTFRPSQVLKNALNGEV 93 >gi|170017043|ref|YP_001727962.1| nucleoid DNA-binding protein [Leuconostoc citreum KM20] gi|169803900|gb|ACA82518.1| Bacterial nucleoid DNA-binding protein [Leuconostoc citreum KM20] Length = 91 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV S++K GL++KD+T V +F I ++ GE +++ F F V+ + +R GR Sbjct: 3 NKQELVDSVAKATGLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK+ + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91 >gi|116491040|ref|YP_810584.1| nucleoid protein Hbs [Oenococcus oeni PSU-1] gi|290890520|ref|ZP_06553595.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429] gi|116091765|gb|ABJ56919.1| bacterial nucleoid protein Hbs [Oenococcus oeni PSU-1] gi|290479916|gb|EFD88565.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429] Length = 91 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV S++K L++KD+T V +F+ I +GE +++ F F V+ + +R GR Sbjct: 3 NKQELVDSVAKATDLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FK LK + Sbjct: 63 NPQTGAEIKIPASKVPAFKPGKALKDTVK 91 >gi|332798190|ref|YP_004459689.1| histone family protein DNA-binding protein [Tepidanaerobacter sp. Re1] gi|332695925|gb|AEE90382.1| histone family protein DNA-binding protein [Tepidanaerobacter sp. Re1] Length = 91 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GL++KDS + + + ++ V+ + +++ F TF V+++ SR G Sbjct: 1 MNKAELITAMAEKSGLTKKDSEKALNAFIESVEEALVKRDKVQLVGFGTFEVRERSSRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + FKA LK I + Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSINN 91 >gi|226199688|ref|ZP_03795241.1| integration host factor alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|225928274|gb|EEH24308.1| integration host factor alpha subunit [Burkholderia pseudomallei Pakistan 9] Length = 131 Score = 136 bits (345), Expect = 8e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 30 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 90 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 124 >gi|90021230|ref|YP_527057.1| integration host factor subunit alpha [Saccharophagus degradans 2-40] gi|123396256|sp|Q21KD4|IHFA_SACD2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|89950830|gb|ABD80845.1| integration host factor, alpha subunit [Saccharophagus degradans 2-40] Length = 101 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 55/94 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS ++T++DL + + +E G +++++ V F EI +S E +K+S F F ++ K Sbjct: 1 MSTSLTKADLAEKLYEELGFNKREAKELVEHFFEEIRNSLEDNEQVKLSGFGNFDLRDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +E+ I RRVV F+ LK R+ Sbjct: 61 QRPGRNPKTGEEIPITARRVVTFRPGQKLKARVE 94 >gi|288957866|ref|YP_003448207.1| integration host factor subunit alpha [Azospirillum sp. B510] gi|288910174|dbj|BAI71663.1| integration host factor subunit alpha [Azospirillum sp. B510] Length = 111 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 52/100 (52%), Positives = 72/100 (72%), Gaps = 1/100 (1%) Query: 1 MSK-TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS+ T+TR+ L +++ +E GLSR +S V T+ +EI D+ RGE +KISSF +F V+QK Sbjct: 1 MSQNTVTRAQLSEAVYQEVGLSRNESADLVETVLDEISDALARGEMVKISSFGSFQVRQK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 G RVGRN +T +EV I PRRV+VF+AS +LK RI + G Sbjct: 61 GERVGRNPKTGEEVPILPRRVLVFRASHVLKHRINEVQEG 100 >gi|91784422|ref|YP_559628.1| integration host factor subunit alpha [Burkholderia xenovorans LB400] gi|296163121|ref|ZP_06845892.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1] gi|91688376|gb|ABE31576.1| Integration host factor, alpha subunit [Burkholderia xenovorans LB400] gi|295886623|gb|EFG66470.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1] Length = 136 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132 >gi|126454482|ref|YP_001066011.1| integration host factor subunit alpha [Burkholderia pseudomallei 1106a] gi|167845972|ref|ZP_02471480.1| integration host factor subunit alpha [Burkholderia pseudomallei B7210] gi|242316112|ref|ZP_04815128.1| integration host factor alpha subunit [Burkholderia pseudomallei 1106b] gi|126228124|gb|ABN91664.1| integration host factor alpha subunit [Burkholderia pseudomallei 1106a] gi|242139351|gb|EES25753.1| integration host factor alpha subunit [Burkholderia pseudomallei 1106b] Length = 134 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|76811001|ref|YP_333297.1| integration host factor subunit alpha [Burkholderia pseudomallei 1710b] gi|167738844|ref|ZP_02411618.1| integration host factor subunit alpha [Burkholderia pseudomallei 14] gi|167894550|ref|ZP_02481952.1| integration host factor subunit alpha [Burkholderia pseudomallei 7894] gi|167911190|ref|ZP_02498281.1| integration host factor subunit alpha [Burkholderia pseudomallei 112] gi|167919213|ref|ZP_02506304.1| integration host factor subunit alpha [Burkholderia pseudomallei BCC215] gi|254261246|ref|ZP_04952300.1| integration host factor alpha subunit [Burkholderia pseudomallei 1710a] gi|254297833|ref|ZP_04965286.1| integration host factor alpha subunit [Burkholderia pseudomallei 406e] gi|76580454|gb|ABA49929.1| integration host factor, alpha subunit [Burkholderia pseudomallei 1710b] gi|157807473|gb|EDO84643.1| integration host factor alpha subunit [Burkholderia pseudomallei 406e] gi|254219935|gb|EET09319.1| integration host factor alpha subunit [Burkholderia pseudomallei 1710a] Length = 134 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|121997363|ref|YP_001002150.1| integration host factor subunit beta [Halorhodospira halophila SL1] gi|166918550|sp|A1WUI6|IHFB_HALHL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|121588768|gb|ABM61348.1| integration host factor, beta subunit [Halorhodospira halophila SL1] Length = 102 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I+ K+ L+ KD V + + ++ G+ I+I F +F + + +R+ Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVNSSRHQAPLRSQ 102 >gi|254491603|ref|ZP_05104782.1| integration host factor, alpha subunit [Methylophaga thiooxidans DMS010] gi|224463081|gb|EEF79351.1| integration host factor, alpha subunit [Methylophaga thiooxydans DMS010] Length = 98 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + E G +++++ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADMTEQLYDELGFNKREAKELVEMFFEEIRSALENGEQVKLSGFGNFELRDKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK R+ D+ G + Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARV-DNYAGSE 98 >gi|54310488|ref|YP_131508.1| putative DNA-binding protein HU-alpha [Photobacterium profundum SS9] gi|46914931|emb|CAG21706.1| putative DNA-binding protein HU-alpha [Photobacterium profundum SS9] Length = 90 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDQIAEKADLSKAQAKLALESTLEGITDALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE++I V F + LK + Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALKDALK 90 >gi|254188588|ref|ZP_04895099.1| integration host factor alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|157936267|gb|EDO91937.1| integration host factor alpha subunit [Burkholderia pseudomallei Pasteur 52237] Length = 134 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 33 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 92 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 93 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 127 >gi|146296415|ref|YP_001180186.1| histone family protein DNA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409991|gb|ABP66995.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 95 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 58/94 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +LVKSI+++ GL++KDS R + L I ++ +G+ +++ F TF VK++ R G Sbjct: 1 MSKEELVKSIAEKSGLTKKDSERALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+ I V +FKA LK+ + + Sbjct: 61 RNPQTGEEILIPATVVPIFKAGKGLKEAVSSPAK 94 >gi|307544939|ref|YP_003897418.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581] gi|307216963|emb|CBV42233.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581] Length = 90 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ + + ++R + + + + DS +G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIEAIAASADIPKAAASRALDAMVDAVADSLKKGDSVSLVGFGTFTVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I +V FKA LK + Sbjct: 61 RNPQTGEPIQISAAKVPSFKAGKALKDSVN 90 >gi|120554755|ref|YP_959106.1| histone family protein DNA-binding protein [Marinobacter aquaeolei VT8] gi|120324604|gb|ABM18919.1| bacterial nucleoid protein HU beta subunit [Marinobacter aquaeolei VT8] gi|311695073|gb|ADP97946.1| histone-like bacterial DNA-binding protein [marine bacterium HP15] Length = 90 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I++ +S+ + R + + N I + +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAESADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V FKA LK + Sbjct: 61 RNPQTGAEIKIPASKVPGFKAGKALKDAVK 90 >gi|160900042|ref|YP_001565624.1| integration host factor subunit alpha [Delftia acidovorans SPH-1] gi|226707373|sp|A9C3C8|IHFA_DELAS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|160365626|gb|ABX37239.1| integration host factor, alpha subunit [Delftia acidovorans SPH-1] Length = 110 Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 56/98 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL++++S V F I S V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKRESKEMVDAFFELISQSLVTGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I+ RRVV F ASS LK++I + G Sbjct: 70 RPGRNPRTGEAIPIEARRVVTFHASSKLKEQIQEGTTG 107 >gi|115351418|ref|YP_773257.1| integration host factor subunit alpha [Burkholderia ambifaria AMMD] gi|172060457|ref|YP_001808109.1| integration host factor subunit alpha [Burkholderia ambifaria MC40-6] gi|115281406|gb|ABI86923.1| integration host factor, alpha subunit [Burkholderia ambifaria AMMD] gi|171992974|gb|ACB63893.1| integration host factor, alpha subunit [Burkholderia ambifaria MC40-6] Length = 131 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 55/97 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T + + I RRVV F AS LK + + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE 131 >gi|92114165|ref|YP_574093.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] gi|91797255|gb|ABE59394.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] Length = 90 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ + + + R + + + + DS +G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIEAIAASADIPKAAAGRALDAMVDTVTDSLKKGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT Q ++I +V FKA LK + Sbjct: 61 RNPQTGQTIEISAAKVPTFKAGKALKDSVN 90 >gi|260582305|ref|ZP_05850098.1| integration host factor, beta subunit [Haemophilus influenzae NT127] gi|260094673|gb|EEW78568.1| integration host factor, beta subunit [Haemophilus influenzae NT127] Length = 116 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 25 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT E++I +V F + LK I Sbjct: 85 TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 116 >gi|50120090|ref|YP_049257.1| transcriptional regulator HU subunit beta [Pectobacterium atrosepticum SCRI1043] gi|227113468|ref|ZP_03827124.1| transcriptional regulator HU subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328851|ref|ZP_03832875.1| transcriptional regulator HU subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687446|ref|YP_003016636.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822504|ref|YP_003260610.1| transcriptional regulator HU subunit beta [Pectobacterium wasabiae WPP163] gi|49610616|emb|CAG74061.1| DNA-binding protein HU-beta [Pectobacterium atrosepticum SCRI1043] gi|251754024|gb|ACT12100.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606517|gb|ACX89003.1| histone family protein DNA-binding protein [Pectobacterium wasabiae WPP163] Length = 90 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKEGDDVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKTLKDAVN 90 >gi|1573405|gb|AAC22089.1| DNA-binding protein HU-alpha (hupA) [Haemophilus influenzae Rd KW20] Length = 136 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 45 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 104 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT E++I +V F + LK I Sbjct: 105 TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 136 >gi|170701126|ref|ZP_02892100.1| integration host factor, alpha subunit [Burkholderia ambifaria IOP40-10] gi|171318448|ref|ZP_02907603.1| integration host factor, alpha subunit [Burkholderia ambifaria MEX-5] gi|170133948|gb|EDT02302.1| integration host factor, alpha subunit [Burkholderia ambifaria IOP40-10] gi|171096362|gb|EDT41264.1| integration host factor, alpha subunit [Burkholderia ambifaria MEX-5] Length = 128 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 55/97 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T + + I RRVV F AS LK + + + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE 128 >gi|187924726|ref|YP_001896368.1| integration host factor subunit alpha [Burkholderia phytofirmans PsJN] gi|187715920|gb|ACD17144.1| integration host factor, alpha subunit [Burkholderia phytofirmans PsJN] Length = 136 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132 >gi|295704900|ref|YP_003597975.1| DNA-binding protein HU [Bacillus megaterium DSM 319] gi|294802559|gb|ADF39625.1| DNA-binding protein HU [Bacillus megaterium DSM 319] Length = 90 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + L+++D+ + V LF I ++ E I++ F TF V+++ +R G Sbjct: 1 MKKAELIDAVATKSELTKQDTKKAVDALFETISNTLANEEKIQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FK LK+ + Sbjct: 61 RNPQTGEEMTIPASKVPAFKPGKELKEALK 90 >gi|209695216|ref|YP_002263145.1| integration host factor subunit alpha [Aliivibrio salmonicida LFI1238] gi|226707367|sp|B6EN06|IHFA_ALISL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|208009168|emb|CAQ79416.1| integration host factor alpha-subunit (IHF-alpha) [Aliivibrio salmonicida LFI1238] Length = 98 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ GLS++D+ V F EI + GE +K+S F F +++K R Sbjct: 2 ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV FK LK R+ D Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARVED 93 >gi|37681329|ref|NP_935938.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016] gi|37200080|dbj|BAC95909.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016] Length = 101 Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 46/93 (49%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ++ L+ I+++ LS+ + + N + D+ G+ +++ F TF V + + Sbjct: 9 GNLMNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAA 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T E++I V F A LK+ + Sbjct: 69 RTGRNPKTGDEIQIAAANVPAFVAGKALKESVN 101 >gi|229018912|ref|ZP_04175755.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|229098192|ref|ZP_04229139.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|229104286|ref|ZP_04234955.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|229117210|ref|ZP_04246588.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228666110|gb|EEL21574.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228678984|gb|EEL33192.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|228685090|gb|EEL39021.1| DNA-binding protein HU [Bacillus cereus Rock3-29] gi|228742355|gb|EEL92512.1| DNA-binding protein HU [Bacillus cereus AH1273] Length = 93 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 58/92 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93 >gi|188992772|ref|YP_001904782.1| histone-like protein [Xanthomonas campestris pv. campestris str. B100] gi|167734532|emb|CAP52742.1| histone-like protein [Xanthomonas campestris pv. campestris] Length = 132 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 43 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 102 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 103 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 132 >gi|256823167|ref|YP_003147130.1| histone family protein DNA-binding protein [Kangiella koreensis DSM 16069] gi|256796706|gb|ACV27362.1| histone family protein DNA-binding protein [Kangiella koreensis DSM 16069] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + R + ++ I DS +GE + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAAGADISKAAAGRALDSMLGAITDSLQKGEQVSLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I +V FKA LK + Sbjct: 61 RNPKTGETIQIKAAKVPGFKAGKALKDAVN 90 >gi|261403920|ref|YP_003240161.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|329925507|ref|ZP_08280381.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5] gi|261280383|gb|ACX62354.1| histone family protein DNA-binding protein [Paenibacillus sp. Y412MC10] gi|328939790|gb|EGG36130.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +IS + GL++KD + EI ++ G+ +++ F TF +++ R G Sbjct: 1 MNKTDLINNISGKSGLTKKDVENVLNGFLGEITEALANGDKVQLIGFGTFETRKRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I V FKA + LK+ + Sbjct: 61 RNPQTGNTIEIPESNVPAFKAGNKLKEAVK 90 >gi|299821635|ref|ZP_07053523.1| DNA-binding protein HU [Listeria grayi DSM 20601] gi|299817300|gb|EFI84536.1| DNA-binding protein HU [Listeria grayi DSM 20601] Length = 112 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV ++++ LS+KD+ + V +F I S +GE +++ F F V+++ +R GR Sbjct: 24 NKTDLVNNVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGR 83 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +E+ I +V FK LK+ + Sbjct: 84 NPRTKEEIDIPASKVPAFKPGKALKEAVK 112 >gi|104773912|ref|YP_618892.1| histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300812170|ref|ZP_07092614.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123538|ref|YP_004033797.1| histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|21633223|gb|AAM22485.1| HlbA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422993|emb|CAI97675.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|300496855|gb|EFK31933.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280101|gb|ADQ60820.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684299|gb|EGD26472.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 91 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++KD + V +F I + +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKDAVK 91 >gi|170695990|ref|ZP_02887128.1| integration host factor, alpha subunit [Burkholderia graminis C4D1M] gi|307730396|ref|YP_003907620.1| integration host factor subunit alpha [Burkholderia sp. CCGE1003] gi|323526730|ref|YP_004228883.1| integration host factor subunit alpha [Burkholderia sp. CCGE1001] gi|170139070|gb|EDT07260.1| integration host factor, alpha subunit [Burkholderia graminis C4D1M] gi|307584931|gb|ADN58329.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1003] gi|323383732|gb|ADX55823.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1001] Length = 136 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEA 132 >gi|323498789|ref|ZP_08103775.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326] gi|323316151|gb|EGA69176.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I V F A LK + Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAVK 90 >gi|167587357|ref|ZP_02379745.1| integration host factor subunit alpha [Burkholderia ubonensis Bu] Length = 133 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R GRN +T + + I RRVV F AS LK + + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPSPAR 133 >gi|326795822|ref|YP_004313642.1| histone family protein DNA-binding protein [Marinomonas mediterranea MMB-1] gi|326546586|gb|ADZ91806.1| histone family protein DNA-binding protein [Marinomonas mediterranea MMB-1] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ ++ + I ++ V+G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADLSKAAASNALDATLKTIEEALVKGDQVTLVGFGTFQVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIKAAKVPSFKAGKGLKDAVN 90 >gi|254178583|ref|ZP_04885238.1| integration host factor alpha subunit [Burkholderia mallei ATCC 10399] gi|160699622|gb|EDP89592.1| integration host factor alpha subunit [Burkholderia mallei ATCC 10399] Length = 115 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 14 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 74 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 108 >gi|56460110|ref|YP_155391.1| nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR] gi|56179120|gb|AAV81842.1| Bacterial nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + ++ + + D+ + + + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I +V FKA LK + Sbjct: 61 RNPQTGETIQIAAAKVPSFKAGKALKDAVN 90 >gi|328543549|ref|YP_004303658.1| integration host factor subunit alpha [polymorphum gilvum SL003B-26A1] gi|326413293|gb|ADZ70356.1| Integration host factor subunit alpha [Polymorphum gilvum SL003B-26A1] Length = 104 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 72/96 (75%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+TITR+DL +++ ++ GLSR +S+ V + +EI D V GE++K+SSF +F V+ KG Sbjct: 3 SRTITRADLCEAVYQKVGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T +EV I PRRV+VFK S+ILK+RI + + Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNILKQRINESL 98 >gi|218848087|ref|YP_002454740.1| DNA-binding protein HU [Bacillus cereus G9842] gi|218546218|gb|ACK98611.1| DNA-binding protein HU [Bacillus cereus G9842] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+K +++ L++KD++ + + I ++ + GE +++ F TF V+++ +R G Sbjct: 1 MNKTALIKHVAEHTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGEEMHIAASKVPAFKAGKELKVAVK 90 >gi|1094409|prf||2106156A DNA-binding protein HU Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+KD+T+ V +F+ I ++ +G+ +++ F F +++ +R G Sbjct: 1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFE-RERAARKG 59 Query: 65 R-NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R N QT +E++I +V FK LK + Sbjct: 60 RVNPQTGEEMEIPASKVPAFKPGKALKDAVK 90 >gi|302876598|ref|YP_003845231.1| histone family protein DNA-binding protein [Clostridium cellulovorans 743B] gi|307687272|ref|ZP_07629718.1| histone family protein DNA-binding protein [Clostridium cellulovorans 743B] gi|302579455|gb|ADL53467.1| histone family protein DNA-binding protein [Clostridium cellulovorans 743B] Length = 91 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ SI+++ GL++KD+ + I ++ + E +++ F TF VK++ R G Sbjct: 1 MNKTELISSIAEKSGLTKKDAEAALKGFMESIQEALEKKEKVQLVGFGTFEVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+KI V FKA LK R+ Sbjct: 61 RNPRTKEEIKIPASSVPSFKAGKELKDRVNK 91 >gi|228961970|ref|ZP_04123500.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797708|gb|EEM44791.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] Length = 91 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + GL + ++ V TL I + G+ +++ F TF V+++ +R G Sbjct: 1 MNKTELITQVAVKTGLKKSQASLAVDTLLESIQQALQNGDNVQLLGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + + I ++ FKA +LK+ + + Sbjct: 61 RNPSTGESLVIPAKKAPAFKAGKVLKEAVNN 91 >gi|254486218|ref|ZP_05099423.1| integration host factor, alpha subunit [Roseobacter sp. GAI101] gi|214043087|gb|EEB83725.1| integration host factor, alpha subunit [Roseobacter sp. GAI101] Length = 110 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 70/96 (72%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + + D+ V+GE +KISSF TF V++K +R Sbjct: 14 KTLTRMDLSEAVFREVGLSRNESAQLVESVLDHMSDALVQGEQVKISSFGTFSVREKSAR 73 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I+PRRV+ F+ S ++K R+ D + Sbjct: 74 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGNK 109 >gi|290476984|ref|YP_003469895.1| DNA-binding protein HU-alpha [Xenorhabdus bovienii SS-2004] gi|289176328|emb|CBJ83133.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation [Xenorhabdus bovienii SS-2004] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ GL++ + + + N I +S G+++++ F TF V + R G Sbjct: 1 MNKTELVDAIAEQAGLTKTQAKTALESTLNAITESLRNGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI V F A LK + Sbjct: 61 RNPQTGNEIKIAAANVPAFSAGKALKDAVK 90 >gi|225181422|ref|ZP_03734865.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225167820|gb|EEG76628.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 90 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ GL++KD+ + V +F+ I D+ +G+ +++ F TF V+++ +R G Sbjct: 1 MNKSELISNVAENAGLTKKDTEKVVNAIFDTIGDALAKGDKVQVIGFGTFDVRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + I +V VFKA LK + Sbjct: 61 RNPATGDTITIPAVKVPVFKAGKALKDTVK 90 >gi|77164655|ref|YP_343180.1| integration host factor subunit alpha [Nitrosococcus oceani ATCC 19707] gi|254434600|ref|ZP_05048108.1| integration host factor, alpha subunit [Nitrosococcus oceani AFC27] gi|123594551|sp|Q3JBZ6|IHFA_NITOC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|76882969|gb|ABA57650.1| Integration host factor, alpha subunit [Nitrosococcus oceani ATCC 19707] gi|207090933|gb|EDZ68204.1| integration host factor, alpha subunit [Nitrosococcus oceani AFC27] Length = 99 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 60/98 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ +E GL+++++ V F +I + +GEA+K+S F F ++ KG R Sbjct: 2 ALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK R+ G++ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGGKQ 99 >gi|237808480|ref|YP_002892920.1| integration host factor, alpha subunit [Tolumonas auensis DSM 9187] gi|259491534|sp|C4LFG7|IHFA_TOLAT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|237500741|gb|ACQ93334.1| integration host factor, alpha subunit [Tolumonas auensis DSM 9187] Length = 106 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 56/103 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + E G+S++D+ V T F +I + GE +KIS F F ++ K R Sbjct: 2 ALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T +++ I RRVV F+ LK R+ + + D Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEHARPVDEADDDG 104 >gi|167750745|ref|ZP_02422872.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702] gi|167656180|gb|EDS00310.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702] Length = 105 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ L++KD+ + ++ L I ++ +GE I++ F TF V+++ +R G Sbjct: 15 MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 74 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T ++KI +V FKA S LK + Sbjct: 75 VNPRTGDKIKIAASKVPAFKAGSALKDAVAK 105 >gi|325288394|ref|YP_004264575.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM 8271] gi|324963795|gb|ADY54574.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM 8271] Length = 90 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ ++KD+ + V + I + G+ +++ F TF VK++ RVG Sbjct: 1 MNKAELVSAVAEKIDFTKKDAEKAVAAVIETISQALAAGDKVQLVGFGTFEVKKREERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I V FKA LK + Sbjct: 61 RNPQTKEEIIIPACNVPGFKAGKALKDAVQ 90 >gi|255318959|ref|ZP_05360184.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82] gi|262378305|ref|ZP_06071462.1| integration host factor, beta subunit [Acinetobacter radioresistens SH164] gi|255303976|gb|EET83168.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82] gi|262299590|gb|EEY87502.1| integration host factor, beta subunit [Acinetobacter radioresistens SH164] Length = 90 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKQGDTVTLVGFGTFGVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSVA 90 >gi|156935007|ref|YP_001438923.1| transcriptional regulator HU subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156533261|gb|ABU78087.1| hypothetical protein ESA_02858 [Cronobacter sakazakii ATCC BAA-894] Length = 90 Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90 >gi|325528721|gb|EGD05791.1| integration host factor subunit alpha [Burkholderia sp. TJI49] Length = 131 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 129 >gi|229168463|ref|ZP_04296186.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228614869|gb|EEK71971.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 93 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 58/92 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T + T+ I +S GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93 >gi|227873321|ref|ZP_03991583.1| DNA-binding protein HU [Oribacterium sinus F0268] gi|227840836|gb|EEJ51204.1| DNA-binding protein HU [Oribacterium sinus F0268] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++K+ LS+KD+ V +F+ I ++ +G+ +++ F TF V ++ +R G Sbjct: 1 MNKVDLVSAVAKQAELSKKDAGLAVEAVFDAISEALEKGDKVQLIGFGTFDVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI + FKA LK R+ Sbjct: 61 RNPRTGETMKIAASKAPRFKAGKALKDRVN 90 >gi|261252635|ref|ZP_05945208.1| integration host factor alpha subunit [Vibrio orientalis CIP 102891] gi|260936026|gb|EEX92015.1| integration host factor alpha subunit [Vibrio orientalis CIP 102891] Length = 98 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|307545110|ref|YP_003897589.1| integration host factor subunit alpha [Halomonas elongata DSM 2581] gi|307217134|emb|CBV42404.1| integration host factor subunit alpha [Halomonas elongata DSM 2581] Length = 122 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 51/91 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + E GLS++++ V + F EI E +K+S F F ++ K R Sbjct: 25 ALTKAELAEHLHAELGLSKREAKSMVESFFEEIRGCLRENEQVKLSGFGNFDLRDKRERP 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK ++ Sbjct: 85 GRNPKTGEEIPISARRVVTFRPGQKLKSQVE 115 >gi|192361986|ref|YP_001982984.1| integration host factor subunit alpha [Cellvibrio japonicus Ueda107] gi|190688151|gb|ACE85829.1| integration host factor, alpha subunit [Cellvibrio japonicus Ueda107] Length = 102 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + ++ GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 5 ALTKADLAEKLYEDLGLNKREAKELVELFFEEIRQALENNEEVKLSGFGNFELRDKSQRP 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 65 GRNPKTGEEIPISARRVVTFRPGQKLKARVE 95 >gi|53719552|ref|YP_108538.1| integration host factor subunit alpha [Burkholderia pseudomallei K96243] gi|81690335|sp|Q63TM8|IHFA_BURPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|52209966|emb|CAH35938.1| integration host factor alpha-subunit [Burkholderia pseudomallei K96243] Length = 115 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 14 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 73 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 74 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 108 >gi|229829761|ref|ZP_04455830.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM 14600] gi|229791750|gb|EEP27864.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM 14600] Length = 122 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KD+ + + + S +GE I++ F TF V ++ +R G Sbjct: 32 MNKTELVAAIAEQADLSKKDAEAALKAFTDVVSKSLKKGEKIQLVGFGTFEVSKRSARTG 91 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI + FKA LK + Sbjct: 92 RNPQTGKTMKIAASKAPKFKAGKALKDAVNK 122 >gi|319762546|ref|YP_004126483.1| integration host factor, beta subunit [Alicycliphilus denitrificans BC] gi|330824563|ref|YP_004387866.1| integration host factor subunit beta [Alicycliphilus denitrificans K601] gi|317117107|gb|ADU99595.1| integration host factor, beta subunit [Alicycliphilus denitrificans BC] gi|329309935|gb|AEB84350.1| integration host factor, beta subunit [Alicycliphilus denitrificans K601] Length = 100 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I+I F +F V + R+ Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVSHRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV 90 >gi|254465016|ref|ZP_05078427.1| integration host factor, alpha subunit [Rhodobacterales bacterium Y4I] gi|206685924|gb|EDZ46406.1| integration host factor, alpha subunit [Rhodobacterales bacterium Y4I] Length = 100 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/97 (47%), Positives = 67/97 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 VGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNRN 100 >gi|300114468|ref|YP_003761043.1| integration host factor subunit alpha [Nitrosococcus watsonii C-113] gi|299540405|gb|ADJ28722.1| integration host factor, alpha subunit [Nitrosococcus watsonii C-113] Length = 99 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 59/98 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F +I + +GEA+K+S F F ++ KG R Sbjct: 2 ALTKADMTEILYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK R+ G++ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGGKQ 99 >gi|149202720|ref|ZP_01879692.1| integration host factor, alpha subunit [Roseovarius sp. TM1035] gi|149144002|gb|EDM32036.1| integration host factor, alpha subunit [Roseovarius sp. TM1035] Length = 100 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/96 (47%), Positives = 68/96 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++I +E GLSR D+ + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAIFREVGLSRNDAAQLVESVLGHMSDALVRGEQVKISSFGTFSVRDKTAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I+PRRV+ F+ S ++K R+ D + Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGTK 99 >gi|257455234|ref|ZP_05620469.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60] gi|257447196|gb|EEV22204.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+K+ GLS+ ST + I ++ + + + F TF VK++ +R G Sbjct: 1 MNKSELVDSIAKKSGLSKAQSTEALNAFIATIGEAMKANDTVSLVGFGTFSVKERQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTKEEIQIPASKVPSFKAGKSLKDMVN 90 >gi|154253364|ref|YP_001414188.1| integration host factor subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154157314|gb|ABS64531.1| integration host factor, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 105 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/105 (43%), Positives = 68/105 (64%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+TR+ L +++ +E GLSR +S V + EI D RG+ +K+SSF +F V++KG Sbjct: 1 MGETVTRAQLSEAVYQEVGLSRNESAELVELVLAEISDCLARGDTVKLSSFGSFSVRKKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T +EV I PRRV+VF+ S +LK+RI G D Sbjct: 61 GRMGRNPKTGEEVPIKPRRVLVFRPSHVLKERINGSSGGASAAAD 105 >gi|261367126|ref|ZP_05980009.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176] gi|282571249|gb|EFB76784.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ +++ E L++KD+ + V T N I ++ G+ + + F TF V+++ +R G Sbjct: 1 MTKVELIAAVANEANLTKKDAEQAVNTALNAITEALKNGDKVTLVGFGTFEVRERPARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I+ ++ FKA LK + Sbjct: 61 RNPQTGAEITIEASKLPAFKAGKALKDAVQ 90 >gi|78066092|ref|YP_368861.1| integration host factor subunit alpha [Burkholderia sp. 383] gi|107022554|ref|YP_620881.1| integration host factor subunit alpha [Burkholderia cenocepacia AU 1054] gi|116689503|ref|YP_835126.1| integration host factor subunit alpha [Burkholderia cenocepacia HI2424] gi|170732808|ref|YP_001764755.1| integration host factor subunit alpha [Burkholderia cenocepacia MC0-3] gi|206559853|ref|YP_002230617.1| integration host factor subunit alpha [Burkholderia cenocepacia J2315] gi|254245604|ref|ZP_04938925.1| Integration host factor alpha subunit [Burkholderia cenocepacia PC184] gi|254252552|ref|ZP_04945870.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158] gi|77966837|gb|ABB08217.1| Integration host factor, alpha subunit [Burkholderia sp. 383] gi|105892743|gb|ABF75908.1| integration host factor, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116647592|gb|ABK08233.1| integration host factor, alpha subunit [Burkholderia cenocepacia HI2424] gi|124870380|gb|EAY62096.1| Integration host factor alpha subunit [Burkholderia cenocepacia PC184] gi|124895161|gb|EAY69041.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158] gi|169816050|gb|ACA90633.1| integration host factor, alpha subunit [Burkholderia cenocepacia MC0-3] gi|198035894|emb|CAR51786.1| integration host factor alpha-subunit [Burkholderia cenocepacia J2315] Length = 131 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 129 >gi|89900136|ref|YP_522607.1| integration host factor subunit alpha [Rhodoferax ferrireducens T118] gi|123091398|sp|Q21YS7|IHFA_RHOFD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|89344873|gb|ABD69076.1| integration host factor, alpha subunit [Rhodoferax ferrireducens T118] Length = 102 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T++ L + + ++ GL++++S V F+ + DS ++GE +KIS F F ++ K R Sbjct: 2 PALTKAQLAELLFEKIGLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F A LK++I D Sbjct: 62 PGRNPRTGETIPIQARRVVTFHAGYKLKEQIQD 94 >gi|28198389|ref|NP_778703.1| histone-like protein [Xylella fastidiosa Temecula1] gi|182681031|ref|YP_001829191.1| histone family protein DNA-binding protein [Xylella fastidiosa M23] gi|32129475|sp|Q87E48|DBH_XYLFT RecName: Full=DNA-binding protein HU gi|28056459|gb|AAO28352.1| histone-like protein [Xylella fastidiosa Temecula1] gi|182631141|gb|ACB91917.1| histone family protein DNA-binding protein [Xylella fastidiosa M23] gi|307579499|gb|ADN63468.1| histone family protein DNA-binding protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 94 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ G+++ + F TF V+Q+ R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + + I FK LK + Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVKSS 92 >gi|87121305|ref|ZP_01077195.1| DNA-binding protein HU-beta [Marinomonas sp. MED121] gi|86163462|gb|EAQ64737.1| DNA-binding protein HU-beta [Marinomonas sp. MED121] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ + + I + +G+ + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAASADLSKAAAGNALDATLEAITGALAKGDQVTLVGFGTFAVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGEEIAIKAAKVPGFKAGKGLKDSVN 90 >gi|109899438|ref|YP_662693.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica T6c] gi|332305577|ref|YP_004433428.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|109701719|gb|ABG41639.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica T6c] gi|332172906|gb|AEE22160.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ S R + L + I + G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAASADISKAASGRALDALTDAITAALKEGDQVALVGFGTFSVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I +V FKA LK Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALKDA 88 >gi|134295553|ref|YP_001119288.1| integration host factor subunit alpha [Burkholderia vietnamiensis G4] gi|134138710|gb|ABO54453.1| integration host factor, alpha subunit [Burkholderia vietnamiensis G4] Length = 128 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126 >gi|262372261|ref|ZP_06065540.1| integration host factor, beta subunit [Acinetobacter junii SH205] gi|262312286|gb|EEY93371.1| integration host factor, beta subunit [Acinetobacter junii SH205] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ G+S+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V FK LK + Sbjct: 61 RNPKTGEELQIKASKVPSFKPGKGLKDSVA 90 >gi|323493296|ref|ZP_08098420.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323312459|gb|EGA65599.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 98 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|253996949|ref|YP_003049013.1| integration host factor subunit alpha [Methylotenera mobilis JLW8] gi|253983628|gb|ACT48486.1| integration host factor, alpha subunit [Methylotenera mobilis JLW8] Length = 97 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F E+ + G+++K+S F F ++QK R Sbjct: 2 TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRTALEAGDSVKLSGFGNFELRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F AS LK ++ + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVDAN 94 >gi|171058434|ref|YP_001790783.1| integration host factor subunit alpha [Leptothrix cholodnii SP-6] gi|170775879|gb|ACB34018.1| integration host factor, alpha subunit [Leptothrix cholodnii SP-6] Length = 113 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 11/113 (9%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F+ I ++ VRGE +K+S F F V++K Sbjct: 11 TPTLTKAELAELLFERLGLNKRESKDMVEAYFDFIHEALVRGEDVKLSGFGNFQVRRKAP 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 R GRN +T + + I R VV F AS LK + + T P G + Sbjct: 71 RPGRNPRTGEAIPIRARNVVTFHASHKLKAIVQGE-----------TPPPGEF 112 >gi|118478949|ref|YP_896100.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228902230|ref|ZP_04066390.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|228909551|ref|ZP_04073374.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228916359|ref|ZP_04079928.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935026|ref|ZP_04097856.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228940802|ref|ZP_04103362.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228947391|ref|ZP_04109682.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954004|ref|ZP_04116033.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959936|ref|ZP_04121601.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966650|ref|ZP_04127696.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228973722|ref|ZP_04134300.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980278|ref|ZP_04140589.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228986865|ref|ZP_04146992.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229031353|ref|ZP_04187356.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|229047408|ref|ZP_04193002.1| DNA-binding protein HU [Bacillus cereus AH676] gi|229071224|ref|ZP_04204448.1| DNA-binding protein HU [Bacillus cereus F65185] gi|229080981|ref|ZP_04213494.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|229092762|ref|ZP_04223900.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|229111199|ref|ZP_04240753.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|229123244|ref|ZP_04252448.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|229129004|ref|ZP_04257977.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|229140371|ref|ZP_04268926.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|229146298|ref|ZP_04274670.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|229151928|ref|ZP_04280124.1| DNA-binding protein HU [Bacillus cereus m1550] gi|229180004|ref|ZP_04307348.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|229185956|ref|ZP_04313127.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|229191850|ref|ZP_04318821.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|229197835|ref|ZP_04324551.1| DNA-binding protein HU [Bacillus cereus m1293] gi|118418174|gb|ABK86593.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228585553|gb|EEK43655.1| DNA-binding protein HU [Bacillus cereus m1293] gi|228591612|gb|EEK49460.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228597508|gb|EEK55157.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1] gi|228603213|gb|EEK60690.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|228631483|gb|EEK88116.1| DNA-binding protein HU [Bacillus cereus m1550] gi|228637172|gb|EEK93630.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24] gi|228642932|gb|EEK99208.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|228654241|gb|EEL10106.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4] gi|228660020|gb|EEL15656.1| DNA-binding protein HU [Bacillus cereus 95/8201] gi|228672193|gb|EEL27483.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|228690560|gb|EEL44341.1| DNA-binding protein HU [Bacillus cereus Rock3-42] gi|228702295|gb|EEL54768.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228711845|gb|EEL63796.1| DNA-binding protein HU [Bacillus cereus F65185] gi|228723937|gb|EEL75288.1| DNA-binding protein HU [Bacillus cereus AH676] gi|228729963|gb|EEL80940.1| DNA-binding protein HU [Bacillus cereus AH1271] gi|228772814|gb|EEM21253.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228779383|gb|EEM27639.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228785968|gb|EEM33969.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793026|gb|EEM40582.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228799679|gb|EEM46631.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805570|gb|EEM52160.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228812244|gb|EEM58574.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228818816|gb|EEM64881.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228824596|gb|EEM70398.1| DNA-binding protein HU [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843269|gb|EEM88348.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849840|gb|EEM94671.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228857345|gb|EEN01845.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 93 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 58/92 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93 >gi|260887856|ref|ZP_05899119.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185] gi|330838724|ref|YP_004413304.1| histone family protein DNA-binding protein [Selenomonas sputigena ATCC 35185] gi|260862362|gb|EEX76862.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185] gi|329746488|gb|AEB99844.1| histone family protein DNA-binding protein [Selenomonas sputigena ATCC 35185] Length = 92 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GLS+K + + + + I ++ V G+ +++ F TF VK + +R G Sbjct: 1 MNKTELVANVAEKAGLSKKVAEQALGAIIESIEEALVEGDKVQLIGFGTFEVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+KI R VFKA LK + + Sbjct: 61 RNPQTGKEIKIAASRNPVFKAGKALKDAVNN 91 >gi|304395502|ref|ZP_07377385.1| histone family protein DNA-binding protein [Pantoea sp. aB] gi|304356796|gb|EFM21160.1| histone family protein DNA-binding protein [Pantoea sp. aB] Length = 93 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 4 VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93 >gi|114565657|ref|YP_752811.1| DNA-binding protein HU [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336592|gb|ABI67440.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 90 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++ + G+++KD + V F+ + + +++ F TF V+ + +R G Sbjct: 1 MNKTELVGQVAAKTGMTKKDVEKVVNAFFDTVEGVLKEDDKVQLIGFGTFEVRARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGEEINIPATKVPAFKAGKALKDAL 89 >gi|115524833|ref|YP_781744.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisA53] gi|122295977|sp|Q07MS0|IHFA_RHOP5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|115518780|gb|ABJ06764.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 113 Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/108 (47%), Positives = 71/108 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V+QKG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRQKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 R+GRN +T EV I PRRV+VFK S+ILK+RI G N D + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQANGSMSNSDQAET 112 >gi|108759809|ref|YP_631785.1| integration host factor subunit alpha [Myxococcus xanthus DK 1622] gi|14194862|sp|Q9K4Q3|IHFA_MYXXA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123247723|sp|Q1D6D8|IHFA_MYXXD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9663772|emb|CAC01236.1| integration host factor alpha subunit [Myxococcus xanthus] gi|108463689|gb|ABF88874.1| integration host factor, alpha subunit [Myxococcus xanthus DK 1622] Length = 129 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 62/92 (67%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+++ + ++ G S+K+S V +F+ + ++ RG+ IKIS F F V+QK +RVG Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT +E++I RRV+ F+ S +LK + + Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALNGE 92 >gi|239995520|ref|ZP_04716044.1| histone-like DNA-binding protein [Alteromonas macleodii ATCC 27126] gi|332141941|ref|YP_004427679.1| histone-like DNA-binding protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551963|gb|AEA98681.1| histone-like DNA-binding protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332992310|gb|AEF02365.1| histone-like DNA-binding protein [Alteromonas sp. SN2] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 45/88 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + + G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDQIAAGADISKAAAGRALDAFTDSVTAALKDGDQVALVGFGTFSVRERSARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I +V FKA LK Sbjct: 61 RNPQTGETIQISAAKVPSFKAGKALKDA 88 >gi|17987462|ref|NP_540096.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|17983157|gb|AAL52360.1| integration host factor alpha-subunit [Brucella melitensis bv. 1 str. 16M] Length = 128 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 48/102 (47%), Positives = 74/102 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 24 GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 84 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 125 >gi|154248306|ref|YP_001419264.1| integration host factor subunit alpha [Xanthobacter autotrophicus Py2] gi|226709760|sp|A7INL3|IHFA_XANP2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|154162391|gb|ABS69607.1| integration host factor, alpha subunit [Xanthobacter autotrophicus Py2] Length = 105 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 69/96 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR+DL +++ ++ GLSR +S + V + EI D RGE +K+SSF +F V++KG Sbjct: 3 GRTVTRADLCEAVYQQVGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RVGRN +T +EV I+PRRV+VFK SSILK RI + Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKHRINGTV 98 >gi|17546302|ref|NP_519704.1| integration host factor subunit alpha [Ralstonia solanacearum GMI1000] gi|21362602|sp|Q8XZ23|IHFA_RALSO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|17428599|emb|CAD15285.1| probable integration host factor alpha-subunit (ihf-alpha) protein [Ralstonia solanacearum GMI1000] Length = 104 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 58/96 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + ++ GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 2 PTLTKAELAEMLFEQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + + Sbjct: 62 PGRNPKTGEIIPITARRVVTFHASQKLKALVEERVE 97 >gi|323705550|ref|ZP_08117124.1| histone family protein DNA-binding protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535027|gb|EGB24804.1| histone family protein DNA-binding protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 92 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ L++KD+ + + + + ++ +G+ +++ F TF V+++ R G Sbjct: 2 VNKADLVTKIAEKSELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + VFKA LK + Sbjct: 62 RNPQTKEEITIPASKAPVFKAGKALKDLVN 91 >gi|90021258|ref|YP_527085.1| nucleoid protein HU subunit beta [Saccharophagus degradans 2-40] gi|89950858|gb|ABD80873.1| bacterial nucleoid protein HU beta subunit [Saccharophagus degradans 2-40] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ +S+ + R + + I ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I ++ FK LK + Sbjct: 61 RNPQTGAPIEIAAAKIPSFKPGKALKDAVN 90 >gi|227893493|ref|ZP_04011298.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047] gi|227864718|gb|EEJ72139.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047] Length = 91 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V +F I D+ +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I V FK LK+ + Sbjct: 63 NPQTGDEIQIPASEVPAFKPGKALKEAVK 91 >gi|229025157|ref|ZP_04181581.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|228736090|gb|EEL86661.1| DNA-binding protein HU [Bacillus cereus AH1272] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90 >gi|84500953|ref|ZP_00999188.1| integration host factor, alpha subunit [Oceanicola batsensis HTCC2597] gi|84391020|gb|EAQ03438.1| integration host factor, alpha subunit [Oceanicola batsensis HTCC2597] Length = 100 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 1/99 (1%) Query: 1 MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M +T +TR DL +++ +E GLSR DS + V ++ + D+ VRGE +KISSF TF V+ K Sbjct: 1 MGETTLTRLDLSEAVFREVGLSRNDSAQLVESVLTHMSDALVRGEQVKISSFGTFSVRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 61 AARVGRNPKTGEEVPISPRRVLTFRPSHLMKDRVADGNR 99 >gi|229174387|ref|ZP_04301919.1| DNA-binding protein HU [Bacillus cereus MM3] gi|228608947|gb|EEK66237.1| DNA-binding protein HU [Bacillus cereus MM3] Length = 93 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 58/92 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T + T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVLQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93 >gi|90407137|ref|ZP_01215325.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3] gi|90311713|gb|EAS39810.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3] Length = 91 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV I+++ L++ + V + I DS GE +++ F TF V + +R+G Sbjct: 1 MNKTQLVAQIAEKSELTKVQAKAAVEQILASITDSLKDGEPVQLIGFGTFKVNHRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++++I V F A LK+ + Sbjct: 61 RNPQTGEDIQIKAANVPAFVAGKALKESVN 90 >gi|156972573|ref|YP_001443480.1| DNA-binding protein [Vibrio harveyi ATCC BAA-1116] gi|156524167|gb|ABU69253.1| hypothetical protein VIBHAR_00213 [Vibrio harveyi ATCC BAA-1116] Length = 101 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 44/93 (47%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + + Sbjct: 9 GNLMNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAA 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T E++I V F A LK+ + Sbjct: 69 RTGRNPKTGDEIQIAAANVPAFVAGKALKESVN 101 >gi|296112017|ref|YP_003622399.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154] gi|300173423|ref|YP_003772589.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811] gi|295833549|gb|ADG41430.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154] gi|299887802|emb|CBL91770.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811] Length = 91 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV S++K GL++KD+T V +F I + GE +++ F F V+ + +R GR Sbjct: 3 NKQELVDSVAKATGLTKKDATASVDAVFASIEAALKNGEKVQLIGFGNFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK+ + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91 >gi|251790645|ref|YP_003005366.1| transcriptional regulator HU subunit beta [Dickeya zeae Ech1591] gi|271499600|ref|YP_003332625.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|307129930|ref|YP_003881946.1| HU, DNA-binding transcriptional regulator, subunit beta [Dickeya dadantii 3937] gi|247539266|gb|ACT07887.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591] gi|270343155|gb|ACZ75920.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|306527459|gb|ADM97389.1| HU, DNA-binding transcriptional regulator, beta subunit [Dickeya dadantii 3937] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFSVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDSVN 90 >gi|308185911|ref|YP_003930042.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|308056421|gb|ADO08593.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] Length = 93 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+ + +R Sbjct: 2 KRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E+ I +V F+A LK + Sbjct: 62 TGRNPQTGKEITIPAGKVPGFRAGKALKDAVN 93 >gi|317492906|ref|ZP_07951330.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919028|gb|EFV40363.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I++ +S+ + R + + + +S G+++ + F TF V+++ +R G Sbjct: 1 MNKSQLVDKIAEGADISKAAAGRALDAIIASVTESLQSGDSVALVGFGTFDVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAVN 90 >gi|270291292|ref|ZP_06197514.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4] gi|304385040|ref|ZP_07367386.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284] gi|270280138|gb|EFA25974.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4] gi|304329234|gb|EFL96454.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284] Length = 91 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 55/89 (61%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV++++K+ GL++KD+T V +F I D +G+ +++ F TF V+ + +R GR Sbjct: 3 NKAELVENVAKKTGLTKKDATAAVEAVFGSIQDDLKKGDKVQLIGFGTFEVRNRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 63 NPQTGKEIEIAASKVPAFKPGKALKDAVK 91 >gi|297538932|ref|YP_003674701.1| integration host factor subunit alpha [Methylotenera sp. 301] gi|297258279|gb|ADI30124.1| integration host factor, alpha subunit [Methylotenera sp. 301] Length = 97 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 57/94 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F E+ + G+++K+S F F +++K R Sbjct: 2 TLTKAELADLLYEQVGLNKREAKDMVEAFFEEVRIALEAGDSVKLSGFGNFELRKKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T +E+ I RRVV F AS LK ++ + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKSKVEANY 95 >gi|228899754|ref|ZP_04064001.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|228912379|ref|ZP_04076069.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228847234|gb|EEM92198.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228859868|gb|EEN04281.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +S++ L++K++T V + ++I S + E++++ F TF V+++ +R G Sbjct: 1 MNKTELINQVSEKTSLTKKEATASVQAILDQITQSLQKEESVQLIGFGTFEVRKRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK+ + Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKALKEAVK 90 >gi|157161173|ref|YP_001458491.1| integration host factor subunit alpha [Escherichia coli HS] gi|166918503|sp|A8A0Q4|IHFA_ECOHS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157066853|gb|ABV06108.1| integration host factor, alpha subunit [Escherichia coli HS] Length = 99 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 TLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|292487472|ref|YP_003530344.1| transcriptional regulator HU subunit beta [Erwinia amylovora CFBP1430] gi|292898714|ref|YP_003538083.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946] gi|291198562|emb|CBJ45670.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946] gi|291552891|emb|CBA19936.1| transcriptional regulator HU subunit beta [Erwinia amylovora CFBP1430] gi|312171577|emb|CBX79835.1| transcriptional regulator HU subunit beta [Erwinia amylovora ATCC BAA-2158] Length = 90 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ E +S+ + R + + +S G+ + + F TF V+++ RVG Sbjct: 1 MNKSQLIDKIAAEADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKALKDAVN 90 >gi|197284030|ref|YP_002149902.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320] gi|194681517|emb|CAR40401.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320] Length = 91 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ +++ + R V + I +S +G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V F+A LK + Sbjct: 61 RNPQTGKEIQIAAAKVPAFRAGKGLKDAVNQ 91 >gi|114320093|ref|YP_741776.1| integration host factor subunit beta [Alkalilimnicola ehrlichii MLHE-1] gi|122312080|sp|Q0AA51|IHFB_ALHEH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114226487|gb|ABI56286.1| integration host factor, beta subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 100 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ K+ L+ KD V TL ++ ++ GE I+I F +F + + R+ Sbjct: 1 MTKSELIEVIAGKQQHLAHKDVELAVKTLLEQMSETLASGERIEIRGFGSFSLHHRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + V + + V FK L+ R+ Sbjct: 61 GRNPKTGEPVALPGKYVPHFKPGKELRDRVNAGRHN 96 >gi|117618302|ref|YP_856844.1| integration host factor, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|330829620|ref|YP_004392572.1| integration host factor subunit alpha [Aeromonas veronii B565] gi|166918496|sp|A0KKP3|IHFA_AERHH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|117559709|gb|ABK36657.1| integration host factor, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|328804756|gb|AEB49955.1| Integration host factor subunit alpha [Aeromonas veronii B565] Length = 98 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + + G+S++++ V F EI + RGE +KIS F F +++K R Sbjct: 2 ALTKADIAEHLFTQLGMSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|161507461|ref|YP_001577415.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571] gi|260101627|ref|ZP_05751864.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075] gi|160348450|gb|ABX27124.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571] gi|260084560|gb|EEW68680.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075] Length = 91 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 49/88 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V +F I D+ +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT E++I V FK LK+ + Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKEAV 90 >gi|54309334|ref|YP_130354.1| integration host factor subunit alpha [Photobacterium profundum SS9] gi|46913770|emb|CAG20552.1| putative integration host factor, alpha subunit [Photobacterium profundum SS9] Length = 103 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 54/94 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +S +T++DL + + + GLS++D+ V F EI + GE +K+S F F ++ K Sbjct: 4 LSMALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKN 63 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +++ I RRVV F+ LK R+ Sbjct: 64 ERPGRNPKTGEDIPISARRVVTFRPGQKLKARVE 97 >gi|228918712|ref|ZP_04082132.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840929|gb|EEM86151.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 93 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K I+++ L++KD+ + + I ++ G+ ++I F TF V+++ R Sbjct: 2 QKMNKTELTKVIAEKAELTQKDAATATQAVLDTITNALANGDKVQILGFGTFEVRERSER 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93 >gi|260773191|ref|ZP_05882107.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14] gi|260612330|gb|EEX37533.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14] Length = 90 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADISKASAGRALDAFIEAVTDTLQSGDQVALVGFGTFSVRSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKDA 88 >gi|288940721|ref|YP_003442961.1| integration host factor subunit alpha [Allochromatium vinosum DSM 180] gi|288896093|gb|ADC61929.1| integration host factor, alpha subunit [Allochromatium vinosum DSM 180] Length = 99 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 55/91 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F EI + RGE +K+S F F +++K R Sbjct: 2 ALTKADMAEHLFEELGLNKREAKDIVEMFFEEIRAALERGEQVKLSGFGNFDLREKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRPGQKLKSRVE 92 >gi|323495666|ref|ZP_08100737.1| integration host factor subunit alpha [Vibrio sinaloensis DSM 21326] gi|323319301|gb|EGA72241.1| integration host factor subunit alpha [Vibrio sinaloensis DSM 21326] Length = 98 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKHGFSKRDAKETVEAFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|294635327|ref|ZP_06713824.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] gi|291091303|gb|EFE23864.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I++ +S+ + R + + +S +G+A+ + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESLQQGDAVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V F+A LK + Sbjct: 61 RNPQTGKEIEISAAKVPGFRAGKALKDAVN 90 >gi|74317031|ref|YP_314771.1| integration host factor subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|123731845|sp|Q3SK28|IHFA_THIDA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|74056526|gb|AAZ96966.1| integration host factor, alpha subunit [Thiobacillus denitrificans ATCC 25259] Length = 103 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 60/101 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL + + ++ GL+++++ V + F+EI + +G+ +K+S F F ++K R Sbjct: 3 TLTKADLAELLFEKVGLNKREAKDVVESFFDEIRLALEKGDIVKLSGFGNFQCREKPQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T +E+ I RRVV F AS LK ++ G + Sbjct: 63 GRNPKTGEEMPISARRVVTFHASQKLKSQVEGARIGTPSQE 103 >gi|269139156|ref|YP_003295857.1| integration host factor, alpha subunit [Edwardsiella tarda EIB202] gi|294636235|ref|ZP_06714648.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC 23685] gi|267984817|gb|ACY84646.1| integration host factor, alpha subunit [Edwardsiella tarda EIB202] gi|291090470|gb|EFE23031.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC 23685] gi|304559080|gb|ADM41744.1| Integration host factor alpha subunit [Edwardsiella tarda FL6-60] Length = 98 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|186476310|ref|YP_001857780.1| integration host factor subunit alpha [Burkholderia phymatum STM815] gi|184192769|gb|ACC70734.1| integration host factor, alpha subunit [Burkholderia phymatum STM815] Length = 117 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ G+++K+S F F ++ K Sbjct: 16 APTLTKAELAELLFDNVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQ 75 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 76 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 110 >gi|262196926|ref|YP_003268135.1| integration host factor, subunit alpha [Haliangium ochraceum DSM 14365] gi|262080273|gb|ACY16242.1| integration host factor, alpha subunit [Haliangium ochraceum DSM 14365] Length = 100 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D++ ++ ++ G S+K++ V T+F+ I + +GE IKIS F F V++K +R+ Sbjct: 4 MTKADIIDAVYEKVGGFSKKEAAEIVETVFDTIKQTLEQGEKIKISGFGNFVVREKKARI 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT +E+ I RRV+ FK S +LK + Sbjct: 64 GRNPQTGEEITISARRVLTFKPSQVLKNALNGG 96 >gi|237745476|ref|ZP_04575956.1| integration host factor subunit alpha [Oxalobacter formigenes HOxBLS] gi|229376827|gb|EEO26918.1| integration host factor subunit alpha [Oxalobacter formigenes HOxBLS] Length = 125 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + ++ GL+++++ V T F EIC + RGE +K+S F F ++ K Sbjct: 30 TSTLTKAELTELLYEQVGLNKREAKEMVETFFEEICCALERGEMVKLSGFGNFQLRDKPQ 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T +E+ I RRVV F AS LK + Sbjct: 90 RPGRNPRTGEEIPITARRVVTFHASQKLKSMVESA 124 >gi|148559603|ref|YP_001258756.1| integration host factor subunit alpha [Brucella ovis ATCC 25840] gi|148370860|gb|ABQ60839.1| integration host factor, alpha subunit [Brucella ovis ATCC 25840] Length = 128 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 48/102 (47%), Positives = 74/102 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 24 GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 84 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 125 >gi|116492840|ref|YP_804575.1| nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745] gi|116102990|gb|ABJ68133.1| bacterial nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 54/89 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV +++K GL++KD+T V +F+ I D +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVDNVAKVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FK LK + Sbjct: 63 NPQTGKEIEIAASKVPAFKPGKALKDAVK 91 >gi|254469379|ref|ZP_05082784.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062] gi|211961214|gb|EEA96409.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062] Length = 103 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 46/96 (47%), Positives = 68/96 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+TR+DL +++ ++ GLSR +S V + EI S GE++K+SSF +F V+ KG Sbjct: 3 SHTVTRADLCEAVYQKVGLSRTESAELVEQVLAEISASLENGESVKLSSFGSFVVRSKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T +EV I PRRV+VFK S++LK+RI D + Sbjct: 63 RIGRNPKTGEEVPISPRRVMVFKPSNVLKQRINDAL 98 >gi|188534629|ref|YP_001908426.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia tasmaniensis Et1/99] gi|188029671|emb|CAO97550.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia tasmaniensis Et1/99] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ + +S+ + R + + +S G+ + + F TF V+++ RVG Sbjct: 1 MNKSELIDKIATDADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAGKVPGFRAGKTLKDAVN 90 >gi|16801114|ref|NP_471382.1| hypothetical protein lin2048 [Listeria innocua Clip11262] gi|16803973|ref|NP_465458.1| hypothetical protein lmo1934 [Listeria monocytogenes EGD-e] gi|46908167|ref|YP_014556.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str. F2365] gi|47094458|ref|ZP_00232138.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858] gi|47097574|ref|ZP_00235105.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854] gi|116873376|ref|YP_850157.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963914|ref|YP_002349592.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes HCC23] gi|224498616|ref|ZP_03666965.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes Finland 1988] gi|224501267|ref|ZP_03669574.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes FSL R2-561] gi|226224538|ref|YP_002758645.1| non-specific DNA-binding protein HU [Listeria monocytogenes Clip81459] gi|254825571|ref|ZP_05230572.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194] gi|254827181|ref|ZP_05231868.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165] gi|254831465|ref|ZP_05236120.1| non-specific DNA-binding protein HU [Listeria monocytogenes 10403S] gi|254852837|ref|ZP_05242185.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503] gi|254899369|ref|ZP_05259293.1| non-specific DNA-binding protein HU [Listeria monocytogenes J0161] gi|254912492|ref|ZP_05262504.1| DNA-binding protein HU [Listeria monocytogenes J2818] gi|254931895|ref|ZP_05265254.1| DNA-binding protein HU [Listeria monocytogenes HPB2262] gi|254936819|ref|ZP_05268516.1| DNA-binding protein HU [Listeria monocytogenes F6900] gi|254993467|ref|ZP_05275657.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL J2-064] gi|255522325|ref|ZP_05389562.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL J1-175] gi|284802379|ref|YP_003414244.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578] gi|284995521|ref|YP_003417289.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923] gi|289435283|ref|YP_003465155.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892094|ref|ZP_06555090.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071] gi|300763756|ref|ZP_07073753.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017] gi|315282964|ref|ZP_07871256.1| DNA-binding protein HU [Listeria marthii FSL S4-120] gi|315303883|ref|ZP_07874360.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596] gi|16411387|emb|CAD00012.1| hup [Listeria monocytogenes EGD-e] gi|16414549|emb|CAC97278.1| hup [Listeria innocua Clip11262] gi|46881437|gb|AAT04733.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str. F2365] gi|47014049|gb|EAL05051.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854] gi|47017173|gb|EAL08026.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858] gi|116742254|emb|CAK21378.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333184|gb|ACK38978.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria monocytogenes HCC23] gi|225877000|emb|CAS05709.1| Putative non-specific DNA-binding protein HU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599564|gb|EEW12889.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165] gi|258606166|gb|EEW18774.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503] gi|258609414|gb|EEW22022.1| DNA-binding protein HU [Listeria monocytogenes F6900] gi|284057941|gb|ADB68882.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578] gi|284060988|gb|ADB71927.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923] gi|289171527|emb|CBH28071.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290558217|gb|EFD91735.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071] gi|293583447|gb|EFF95479.1| DNA-binding protein HU [Listeria monocytogenes HPB2262] gi|293590474|gb|EFF98808.1| DNA-binding protein HU [Listeria monocytogenes J2818] gi|293594814|gb|EFG02575.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194] gi|300515492|gb|EFK42542.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017] gi|307571516|emb|CAR84695.1| DNA-binding protein [Listeria monocytogenes L99] gi|313607937|gb|EFR84075.1| DNA-binding protein HU [Listeria monocytogenes FSL F2-208] gi|313613391|gb|EFR87243.1| DNA-binding protein HU [Listeria marthii FSL S4-120] gi|313618142|gb|EFR90235.1| DNA-binding protein HU [Listeria innocua FSL S4-378] gi|313623144|gb|EFR93410.1| DNA-binding protein HU [Listeria innocua FSL J1-023] gi|313627747|gb|EFR96403.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596] gi|313632625|gb|EFR99610.1| DNA-binding protein HU [Listeria seeligeri FSL N1-067] gi|313637161|gb|EFS02693.1| DNA-binding protein HU [Listeria seeligeri FSL S4-171] gi|328466283|gb|EGF37440.1| DNA-binding protein HU [Listeria monocytogenes 1816] gi|328472777|gb|EGF43626.1| DNA-binding protein HU [Listeria monocytogenes 220] gi|332312374|gb|EGJ25469.1| DNA-binding protein HU 1 [Listeria monocytogenes str. Scott A] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV S+++ LS+KD+ + V +F I S +GE +++ F F V+++ +R GR Sbjct: 3 NKTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +E+ I +V FK LK+ + Sbjct: 63 NPRTKEEIDIPASKVPAFKPGKALKEAVK 91 >gi|121535091|ref|ZP_01666908.1| histone family protein DNA-binding protein [Thermosinus carboxydivorans Nor1] gi|121306341|gb|EAX47266.1| histone family protein DNA-binding protein [Thermosinus carboxydivorans Nor1] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ G+++KD+ + + +F I ++ + + ++I F TF V+ + +R G Sbjct: 1 MNKTELIASVAEKAGMTKKDAEKALNAVFASIEEALAQNDKVQIIGFGTFEVRTREARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTGKEIDIPASKSPVFKAGKGLKDAVNK 91 >gi|59711844|ref|YP_204620.1| integration host factor subunit alpha [Vibrio fischeri ES114] gi|197336165|ref|YP_002156041.1| integration host factor, alpha subunit [Vibrio fischeri MJ11] gi|75507023|sp|Q5E5G4|IHFA_VIBF1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709758|sp|B5FDX6|IHFA_VIBFM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|59479945|gb|AAW85732.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Vibrio fischeri ES114] gi|197317655|gb|ACH67102.1| integration host factor, alpha subunit [Vibrio fischeri MJ11] Length = 98 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ GLS++D+ V F EI + GE +K+S F F +++K R Sbjct: 2 ALTKADLAETLFEKVGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV FK LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFKPGQKLKARVEN 93 >gi|288958754|ref|YP_003449095.1| DNA-binding protein HU-beta [Azospirillum sp. B510] gi|288911062|dbj|BAI72551.1| DNA-binding protein HU-beta [Azospirillum sp. B510] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+T+ V +F+ I +S G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLVAHVAEASGLSKTDATKAVDAVFDSIAESLKNGDEVRLVGFGTFAVAERPATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++ I + FKA LK + Sbjct: 61 RNPRTGEKIDIPASKQPKFKAGKTLKDALN 90 >gi|225017256|ref|ZP_03706448.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum DSM 5476] gi|224950031|gb|EEG31240.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum DSM 5476] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SDL+ +++ + LS+KD+ + V ++ + I ++ V G+ +++ F TF V+++ +R G Sbjct: 1 MTKSDLINAVAAKAELSKKDAEKAVLSMIDAITEALVEGDKVQLVGFGTFEVRERKARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN + + I V FKA LK + Sbjct: 61 RNPLNGEPMHIPATTVPAFKAGKALKDAVAK 91 >gi|254507806|ref|ZP_05119937.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16] gi|219549331|gb|EED26325.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 48/88 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + L + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDALIEAVSDTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88 >gi|209696250|ref|YP_002264180.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] gi|208010203|emb|CAQ80530.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I V F A LK+ + Sbjct: 61 RNPKTGEEIQIKAANVPAFVAGKALKESVN 90 >gi|73540975|ref|YP_295495.1| integration host factor subunit alpha [Ralstonia eutropha JMP134] gi|72118388|gb|AAZ60651.1| Integration host factor, alpha subunit [Ralstonia eutropha JMP134] Length = 138 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 56/93 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + + GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 38 PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F AS LK + + Sbjct: 98 PGRNPKTGEVIPITARRVVTFHASQKLKSLVEE 130 >gi|163941411|ref|YP_001646295.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|229012904|ref|ZP_04170069.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|229065846|ref|ZP_04201044.1| DNA-binding protein HU [Bacillus cereus AH603] gi|229134528|ref|ZP_04263339.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|163863608|gb|ABY44667.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|228648921|gb|EEL04945.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196] gi|228715422|gb|EEL67252.1| DNA-binding protein HU [Bacillus cereus AH603] gi|228748158|gb|EEL98018.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T + T+ I +S GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90 >gi|83942553|ref|ZP_00955014.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36] gi|83953774|ref|ZP_00962495.1| integration host factor, alpha subunit [Sulfitobacter sp. NAS-14.1] gi|83841719|gb|EAP80888.1| integration host factor, alpha subunit [Sulfitobacter sp. NAS-14.1] gi|83846646|gb|EAP84522.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36] Length = 100 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V + + D+ V+GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVEAVLEHMSDALVKGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I+PRRV+ F+ S ++K R+ D + Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGNK 99 >gi|89892939|ref|YP_516426.1| hypothetical protein DSY0193 [Desulfitobacterium hafniense Y51] gi|219666205|ref|YP_002456640.1| histone family protein DNA-binding protein [Desulfitobacterium hafniense DCB-2] gi|89332387|dbj|BAE81982.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536465|gb|ACL18204.1| histone family protein DNA-binding protein [Desulfitobacterium hafniense DCB-2] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ +S+KD+ + V +F I ++ + E +++ F TF VK + R G Sbjct: 1 MNKADLVAAVAEKAEVSKKDAEKAVNAVFASIEEALAKNEKVQLVGFGTFEVKDRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I +V FKA LK + Sbjct: 61 RNPQTKEAIVIPASKVPGFKAGKALKDAVQQ 91 >gi|149377378|ref|ZP_01895122.1| integration host factor, beta subunit [Marinobacter algicola DG893] gi|149358302|gb|EDM46780.1| integration host factor, beta subunit [Marinobacter algicola DG893] Length = 98 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+ K+ LS KD V T+ + S G+ I+I F +F + + +R Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++ + V FK L++++ D ++ Sbjct: 61 GRNPKTGEAVQLPAKFVPHFKPGKELREQVNDSLK 95 >gi|50084585|ref|YP_046095.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1] gi|49530561|emb|CAG68273.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + + ++ +G+ + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAEKGGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTFSVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSVA 90 >gi|332993560|gb|AEF03615.1| integration host factor subunit alpha [Alteromonas sp. SN2] Length = 99 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALEAGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVENS 94 >gi|327398825|ref|YP_004339694.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] gi|327181454|gb|AEA33635.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] Length = 404 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 58/91 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+LV++I+++ G S K + FV + + ++ G+++ I+ F F+V Q+G R G Sbjct: 314 MTKSELVEAIARKMGSSVKGANAFVNAFVDVVSEALKSGKSVSITGFGKFYVSQRGERTG 373 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI P ++ FKA +LK+ I D Sbjct: 374 RNPQTGEVIKIKPHKIPAFKAGQVLKQTIND 404 >gi|262370473|ref|ZP_06063799.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046] gi|262314815|gb|EEY95856.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + I ++ G+ + + F TF+VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGLSKTDAGKALDATIASITEALKSGDTVTLVGFGTFNVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDSVA 90 >gi|220929825|ref|YP_002506734.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] gi|220000153|gb|ACL76754.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ SI+ + GL++K+S + + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNVN 90 >gi|152976119|ref|YP_001375636.1| histone family protein DNA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024871|gb|ABS22641.1| histone family protein DNA-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+KS++++ +S+K++T V ++ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKSVAQKAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90 >gi|302388697|ref|YP_003824518.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM 16646] gi|302199325|gb|ADL06895.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM 16646] Length = 91 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ GL++KDS + + + ++ + + +++ F TF V+++ R G Sbjct: 1 MNKAELVSVMAEKSGLTKKDSEKALNAFIEAVSEALSKRDKVQLVGFGTFEVRERSQRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + FKA LK I Sbjct: 61 RNPQTGEEIDIPAASIPAFKAGKALKDSINK 91 >gi|159044270|ref|YP_001533064.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL 12] gi|189044700|sp|A8LLT5|IHFA_DINSH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157912030|gb|ABV93463.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL 12] Length = 101 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 45/98 (45%), Positives = 69/98 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++ +E GLSR +S + V ++ + D+ VRGE++KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +GRN +T +EV I PRRV+ F+ S ++K+R+ + R R Sbjct: 64 IGRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGNRNR 101 >gi|254506390|ref|ZP_05118532.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16] gi|219550564|gb|EED27547.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16] Length = 90 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I V F + LK + Sbjct: 61 RNPKTGEEIQIAAANVPAFVSGKALKDAVK 90 >gi|126736415|ref|ZP_01752157.1| integration host factor, alpha subunit [Roseobacter sp. CCS2] gi|126714236|gb|EBA11105.1| integration host factor, alpha subunit [Roseobacter sp. CCS2] Length = 100 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 63/96 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++ + GLSR DS V ++ + + DS V GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLADAVHSQVGLSRNDSADLVESVLSHVSDSLVSGETVKISSFGTFSVRDKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVAAGNK 99 >gi|253987885|ref|YP_003039241.1| DNA binding protein hu-alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779335|emb|CAQ82496.1| dna-binding protein hu-alpha (ns2) (hu-2) [Photorhabdus asymbiotica] Length = 90 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I +S G+++++ F TF V + R G Sbjct: 1 MNKTELVDAIAESTDLTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I V F A LK + Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAVK 90 >gi|161524946|ref|YP_001579958.1| integration host factor subunit alpha [Burkholderia multivorans ATCC 17616] gi|160342375|gb|ABX15461.1| integration host factor, alpha subunit [Burkholderia multivorans ATCC 17616] Length = 136 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 35 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 94 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 95 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 129 >gi|238927161|ref|ZP_04658921.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531] gi|238884943|gb|EEQ48581.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531] Length = 100 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +LV +++++ L++KD+ + V LF I + G+ +++ F TF VK + +R Sbjct: 10 TLNKQELVANVAEQASLTKKDAEKAVNALFETIKGALSEGDKVQLIGFGTFEVKDRKARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + ++I R VFKA LK + Sbjct: 70 GRNPQTGKVIEIAASRNPVFKAGKALKDSVN 100 >gi|229086297|ref|ZP_04218475.1| DNA-binding protein HU [Bacillus cereus Rock3-44] gi|228696992|gb|EEL49799.1| DNA-binding protein HU [Bacillus cereus Rock3-44] Length = 90 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V ++ + I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTAEISQKEATVVVQSVVDSITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90 >gi|163739611|ref|ZP_02147020.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis BS107] gi|161387070|gb|EDQ11430.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis BS107] Length = 100 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 47/96 (48%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V +L + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99 >gi|312884548|ref|ZP_07744252.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309367860|gb|EFP95408.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 97 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEMFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|220931899|ref|YP_002508807.1| histone family protein DNA-binding protein [Halothermothrix orenii H 168] gi|219993209|gb|ACL69812.1| histone family protein DNA-binding protein [Halothermothrix orenii H 168] Length = 137 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 8/101 (7%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA------VRGEA--IKISSFATF 54 +T++DLV +++ + GL++KDS + V +F+ I + G+ ++I F TF Sbjct: 37 NIMTKTDLVDAVAAKTGLTKKDSNKAVKAVFDSIVEHLSDESKKAEGDRDSVQIIGFGTF 96 Query: 55 HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 VK + +R GRN QT +E+ I R V VF+ K+ + Sbjct: 97 EVKDRSARKGRNPQTGEEITIPARTVPVFRPGKSFKEAVEK 137 >gi|192362010|ref|YP_001982578.1| himD/ihfB [Cellvibrio japonicus Ueda107] gi|190688175|gb|ACE85853.1| himD/ihfB [Cellvibrio japonicus Ueda107] Length = 121 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+++ L KD V L + + D GE I+I F +F + + R Sbjct: 25 MTKSELIELITEKQNQLPIKDVEMAVKLLLDHMSDVLASGERIEIRGFGSFSLHYRAPRT 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V +D + V FK ++ R+ + + Sbjct: 85 GRNPKTGESVVLDGKYVPHFKPGKEMRDRVNESI 118 >gi|113867363|ref|YP_725852.1| integration host factor subunit alpha [Ralstonia eutropha H16] gi|113526139|emb|CAJ92484.1| integration host factor alpha subunit [Ralstonia eutropha H16] Length = 128 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 56/93 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + + GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 30 PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 89 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F AS LK + + Sbjct: 90 PGRNPKTGEVIPITARRVVTFHASQKLKGLVEE 122 >gi|30021822|ref|NP_833453.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|30263731|ref|NP_846108.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42782806|ref|NP_980053.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47529146|ref|YP_020495.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47568219|ref|ZP_00238922.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49186575|ref|YP_029827.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49479195|ref|YP_037793.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141761|ref|YP_085068.1| DNA-binding protein HU [Bacillus cereus E33L] gi|167636022|ref|ZP_02394328.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|167639780|ref|ZP_02398049.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|170706770|ref|ZP_02897228.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|177652045|ref|ZP_02934591.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190568477|ref|ZP_03021384.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|196034180|ref|ZP_03101590.1| DNA-binding protein HU [Bacillus cereus W] gi|196038306|ref|ZP_03105615.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|196044455|ref|ZP_03111690.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|206968651|ref|ZP_03229606.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|217961152|ref|YP_002339720.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218235888|ref|YP_002368531.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218898826|ref|YP_002447237.1| DNA-binding protein HU [Bacillus cereus G9842] gi|218904856|ref|YP_002452690.1| DNA-binding protein HU [Bacillus cereus AH820] gi|222097183|ref|YP_002531240.1| DNA-binding protein hu [Bacillus cereus Q1] gi|225865703|ref|YP_002751081.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227813371|ref|YP_002813380.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228922442|ref|ZP_04085744.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228928776|ref|ZP_04091810.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229157305|ref|ZP_04285383.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|229162660|ref|ZP_04290617.1| DNA-binding protein HU [Bacillus cereus R309803] gi|229604479|ref|YP_002867967.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|254683564|ref|ZP_05147424.1| HU family DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254721154|ref|ZP_05182945.1| HU family DNA-binding protein [Bacillus anthracis str. A1055] gi|254735764|ref|ZP_05193470.1| HU family DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254739537|ref|ZP_05197232.1| HU family DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751106|ref|ZP_05203145.1| HU family DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759423|ref|ZP_05211448.1| HU family DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296504231|ref|YP_003665931.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|301055218|ref|YP_003793429.1| histone family protein DNA-binding protein [Bacillus anthracis CI] gi|29897378|gb|AAP10654.1| DNA-binding protein HU [Bacillus cereus ATCC 14579] gi|30258375|gb|AAP27594.1| DNA-binding protein HU [Bacillus anthracis str. Ames] gi|42738733|gb|AAS42661.1| DNA-binding protein HU [Bacillus cereus ATCC 10987] gi|47504294|gb|AAT32970.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor'] gi|47555047|gb|EAL13395.1| DNA-binding protein HU [Bacillus cereus G9241] gi|49180502|gb|AAT55878.1| DNA-binding protein HU [Bacillus anthracis str. Sterne] gi|49330751|gb|AAT61397.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975230|gb|AAU16780.1| DNA-binding protein HU [Bacillus cereus E33L] gi|167512181|gb|EDR87558.1| DNA-binding protein HU [Bacillus anthracis str. A0193] gi|167528534|gb|EDR91296.1| DNA-binding protein HU [Bacillus anthracis str. A0442] gi|170128188|gb|EDS97057.1| DNA-binding protein HU [Bacillus anthracis str. A0389] gi|172082414|gb|EDT67479.1| DNA-binding protein HU [Bacillus anthracis str. A0174] gi|190560481|gb|EDV14459.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I] gi|195993254|gb|EDX57212.1| DNA-binding protein HU [Bacillus cereus W] gi|196024490|gb|EDX63162.1| DNA-binding protein HU [Bacillus cereus 03BB108] gi|196030714|gb|EDX69312.1| DNA-binding protein HU [Bacillus cereus NVH0597-99] gi|206735692|gb|EDZ52850.1| DNA-binding protein HU [Bacillus cereus AH1134] gi|217063322|gb|ACJ77572.1| DNA-binding protein HU [Bacillus cereus AH187] gi|218163845|gb|ACK63837.1| DNA-binding protein HU [Bacillus cereus B4264] gi|218538783|gb|ACK91181.1| DNA-binding protein HU [Bacillus cereus AH820] gi|218545282|gb|ACK97676.1| DNA-binding protein HU [Bacillus cereus G9842] gi|221241241|gb|ACM13951.1| DNA-binding protein HU [Bacillus cereus Q1] gi|225787211|gb|ACO27428.1| DNA-binding protein HU [Bacillus cereus 03BB102] gi|227004634|gb|ACP14377.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684] gi|228620542|gb|EEK77411.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228626032|gb|EEK82781.1| DNA-binding protein HU [Bacillus cereus ATCC 4342] gi|228830861|gb|EEM76464.1| DNA-binding protein HU [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228837156|gb|EEM82495.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229268887|gb|ACQ50524.1| DNA-binding protein HU [Bacillus anthracis str. A0248] gi|296325283|gb|ADH08211.1| DNA-binding protein HU [Bacillus thuringiensis BMB171] gi|300377387|gb|ADK06291.1| histone family protein DNA-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324327620|gb|ADY22880.1| HU family DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326941437|gb|AEA17333.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90 >gi|301629967|ref|XP_002944103.1| PREDICTED: DNA-binding protein HU-beta-like [Xenopus (Silurana) tropicalis] Length = 139 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G+ + + F TF V ++ +R G Sbjct: 50 VNKTELIEHIATHADISKAAAARALESTIEAVKKTLKKGDTVSLVGFGTFAVGKRAARTG 109 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 110 RNPRTGATIKIKAAKVPKFRPGKALKDALN 139 >gi|259419005|ref|ZP_05742922.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B] gi|259345227|gb|EEW57081.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B] Length = 109 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 46/96 (47%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 13 KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 72 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D + Sbjct: 73 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNK 108 >gi|238919788|ref|YP_002933303.1| integration host factor subunit alpha [Edwardsiella ictaluri 93-146] gi|259491531|sp|C5B852|IHFA_EDWI9 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|238869357|gb|ACR69068.1| integration host factor, alpha subunit, putative [Edwardsiella ictaluri 93-146] Length = 98 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKCRVENATP 96 >gi|83644982|ref|YP_433417.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] gi|83633025|gb|ABC28992.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] Length = 90 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +S+ + R + + + ++ +GE + + F TF VK++ +R G Sbjct: 1 MNKSELIDAVAASADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +KID +V FKA LK + Sbjct: 61 RNPQTGATIKIDAAKVPSFKAGKALKDAVN 90 >gi|312882504|ref|ZP_07742245.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309369904|gb|EFP97415.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 90 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 48/87 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAESADLSKASAGRALDAFIDAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKD 87 >gi|189350306|ref|YP_001945934.1| integration host factor subunit alpha [Burkholderia multivorans ATCC 17616] gi|189334328|dbj|BAG43398.1| integration host factor alpha subunit [Burkholderia multivorans ATCC 17616] Length = 133 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 32 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 92 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 126 >gi|239996231|ref|ZP_04716755.1| integration host factor subunit alpha [Alteromonas macleodii ATCC 27126] Length = 99 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVENS 94 >gi|332141057|ref|YP_004426795.1| integration host factor subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] gi|226707368|sp|B4RS41|IHFA_ALTMD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|327551079|gb|AEA97797.1| integration host factor subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] Length = 99 Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKLGINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVENS 94 >gi|218290666|ref|ZP_03494757.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|258510204|ref|YP_003183638.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239331|gb|EED06529.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|257476930|gb|ACV57249.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 48/87 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ L +KD+ V +F I ++ GE ++I F TF + + +R G Sbjct: 1 MNKMELINRVAEKTNLKKKDAESAVNAVFEIIEEALANGEKVQIIGFGTFETRSRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I V FK + LK+ Sbjct: 61 RNPQTGEVIEIPASTVPAFKPGNKLKE 87 >gi|114704822|ref|ZP_01437730.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506] gi|114539607|gb|EAU42727.1| integration host factor alpha subunit [Fulvimarina pelagi HTCC2506] Length = 119 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 49/111 (44%), Positives = 75/111 (67%), Gaps = 1/111 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + E+C++ GEA+KISSF +F V+ K Sbjct: 3 GKTLTRADLSEAVFRKIGLSRTESATLVEMVLEEVCETISSGEAVKISSFGSFLVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM-RGRKCNKDDVTSPS 111 RVGRN +T +EV I PR+V VFK S++LK+RI++ R + + DD P+ Sbjct: 63 RVGRNPKTGEEVPISPRKVTVFKPSNVLKERILEAHSRKNRADNDDTYVPA 113 >gi|332637851|ref|ZP_08416714.1| DNA-binding protein HU [Weissella cibaria KACC 11862] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV ++ GL++KD+T V +F I D+ +G+ +++ F F V+ + +R GR Sbjct: 3 NKQELVNDVATTTGLTKKDATAAVDAVFASIQDTLAKGDKVQLIGFGNFEVRTRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I ++ FK LK I Sbjct: 63 NPQTGEEIEIAASKIPAFKPGKALKDAIK 91 >gi|58337267|ref|YP_193852.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM] gi|227903852|ref|ZP_04021657.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796] gi|315038200|ref|YP_004031768.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112] gi|325956652|ref|YP_004292064.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC] gi|58254584|gb|AAV42821.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM] gi|227868739|gb|EEJ76160.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796] gi|312276333|gb|ADQ58973.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112] gi|323466655|gb|ADX70342.1| Integration host factor, beta subunit [Lactobacillus helveticus H10] gi|325333217|gb|ADZ07125.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC] gi|327183477|gb|AEA31924.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1118] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ V +F I D+ +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVASKTKLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I V FK LK+ + Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKEAVK 91 >gi|227892106|ref|ZP_04009911.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] gi|301300365|ref|ZP_07206569.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866089|gb|EEJ73510.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] gi|300852049|gb|EFK79729.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+++ G ++K++ V+ + ++ V G+ ++I F F V+++ +R G Sbjct: 1 MNKNELVEAIAEKMGTTKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLKDAVNK 91 >gi|227879097|ref|ZP_03996986.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256843086|ref|ZP_05548574.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN] gi|256850262|ref|ZP_05555691.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US] gi|262046346|ref|ZP_06019308.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US] gi|293379769|ref|ZP_06625901.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295692882|ref|YP_003601492.1| DNA-binding protein hu [Lactobacillus crispatus ST1] gi|227861338|gb|EEJ68968.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256614506|gb|EEU19707.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN] gi|256712899|gb|EEU27891.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US] gi|260573217|gb|EEX29775.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US] gi|290923678|gb|EFE00549.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295030988|emb|CBL50467.1| DNA-binding protein HU [Lactobacillus crispatus ST1] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K V + + I ++ +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVASKTKLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I V FK LK + Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKDAVK 91 >gi|229918705|ref|YP_002887351.1| histone family protein DNA-binding protein [Exiguobacterium sp. AT1b] gi|229470134|gb|ACQ71906.1| histone family protein DNA-binding protein [Exiguobacterium sp. AT1b] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++++ +S+K++T+ V F I ++ GE I++ F TF V+++ +R G Sbjct: 1 MNKTELIQAVTEKADVSKKEATKIVEATFESITEALQNGEKIQLIGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++++I +V FKA LK + Sbjct: 61 RNPRTKEDIEIPASKVPAFKAGKALKDAVK 90 >gi|117620625|ref|YP_856545.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145298874|ref|YP_001141715.1| nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] gi|330829915|ref|YP_004392867.1| histone-like DNA-binding protein [Aeromonas veronii B565] gi|117562032|gb|ABK38980.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|142851646|gb|ABO89967.1| Bacterial nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] gi|328805051|gb|AEB50250.1| histone-like DNA-binding protein [Aeromonas veronii B565] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIADGADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGATIEIAAGKVPAFKAGKALKDAVN 90 >gi|89069686|ref|ZP_01157023.1| integration host factor, alpha subunit [Oceanicola granulosus HTCC2516] gi|89044766|gb|EAR50872.1| integration host factor, alpha subunit [Oceanicola granulosus HTCC2516] Length = 101 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 46/97 (47%), Positives = 66/97 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT+TR DL +++ E GLSR DS V ++ + D+ VRGE +KISSF TF V++K + Sbjct: 3 NKTLTRMDLAEAVHAEVGLSRNDSAELVESILTHVSDALVRGETVKISSFGTFSVREKAA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T +EV I PRRV+ F+ S ++K R+ R Sbjct: 63 RVGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVAAGNR 99 >gi|326204212|ref|ZP_08194072.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] gi|325985723|gb|EGD46559.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ SI+ + GL++K+S + + + ++ G+ + + F TF V+++ +R G Sbjct: 1 MNKSDLINSIATKSGLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDNVN 90 >gi|260779041|ref|ZP_05887933.1| integration host factor alpha subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260605205|gb|EEX31500.1| integration host factor alpha subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 98 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 55/93 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F +++K R Sbjct: 2 ALTKADLAENLFEKLGYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLREKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVENA 94 >gi|221642274|ref|YP_002533361.1| small DNA-binding protein (bacterial histone-like family) [Bacillus cereus Q1] gi|228962916|ref|ZP_04124153.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] gi|221243209|gb|ACM15918.1| small DNA-binding protein (bacterial histone-like family) [Bacillus cereus Q1] gi|228796774|gb|EEM44147.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani str. T13001] Length = 92 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + L++ ++ V + I + GE +++ F TF V+++ +R G Sbjct: 1 MNKSELIKQVAIQSELTKPQASLAVDAVLESIQHALQNGEHVQLLGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + + I + FKA LK+ + Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAVK 90 >gi|118590043|ref|ZP_01547447.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614] gi|118437540|gb|EAV44177.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F+ + + G+ ++I F F V ++ + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTQTLKSGDEVRIIGFGNFTVSERAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90 >gi|92113928|ref|YP_573856.1| integration host factor, alpha subunit [Chromohalobacter salexigens DSM 3043] gi|123387450|sp|Q1QWK1|IHFA_CHRSD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91797018|gb|ABE59157.1| integration host factor, alpha subunit [Chromohalobacter salexigens DSM 3043] Length = 102 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + E G S++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKADLAEHLHAELGFSKREAKSMVEAFFEEIRSCLRENEQVKLSGFGNFDLRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F+ LK R+ D Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVED 94 >gi|58580659|ref|YP_199675.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425253|gb|AAW74290.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 145 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 56 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 115 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 116 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 145 >gi|291616552|ref|YP_003519294.1| HupB [Pantoea ananatis LMG 20103] gi|317047178|ref|YP_004114826.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] gi|291151582|gb|ADD76166.1| HupB [Pantoea ananatis LMG 20103] gi|316948795|gb|ADU68270.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] gi|327392984|dbj|BAK10406.1| DNA-binding protein HU-beta HupB [Pantoea ananatis AJ13355] Length = 93 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + D+ G+ + + F TF V+++ +R G Sbjct: 4 VNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAARTG 63 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93 >gi|194289389|ref|YP_002005296.1| integration host factor subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193223224|emb|CAQ69229.1| integration host factor (IHF), alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 136 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 56/93 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + + GL++++S V F+ I ++ +G+++K+S F F ++ K R Sbjct: 38 PTLTKAELAEMLFDQVGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQR 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I RRVV F AS LK + + Sbjct: 98 PGRNPKTGEVIPITARRVVTFHASQKLKGLVEE 130 >gi|221066200|ref|ZP_03542305.1| integration host factor, alpha subunit [Comamonas testosteroni KF-1] gi|220711223|gb|EED66591.1| integration host factor, alpha subunit [Comamonas testosteroni KF-1] Length = 108 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL+++++ V F+ I V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F ASS LK+ I + G Sbjct: 70 RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107 >gi|212709049|ref|ZP_03317177.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens DSM 30120] gi|212688338|gb|EEB47866.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens DSM 30120] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + I DS GEA+++ F TF V + +R G Sbjct: 1 MNKTELVDAIAESADLTKTQAKAALEATLSAISDSLKSGEAVQLVGFGTFKVSHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V F A LK + Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAVK 90 >gi|251794085|ref|YP_003008816.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] gi|247541711|gb|ACS98729.1| histone family protein DNA-binding protein [Paenibacillus sp. JDR-2] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ + GL+++D + E+ D+ G+ +++ F TF +++ RVG Sbjct: 1 MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALAGGDKVQLIGFGTFETRKRSGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA + LK I Sbjct: 61 RNPQTGKEISIPESKVPAFKAGNKLKDAIK 90 >gi|308050305|ref|YP_003913871.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] gi|307632495|gb|ADN76797.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + I S GE I + F TF V+++ R G Sbjct: 1 MNKSQLIDQIASGADISKAAAGRALDSFIDAITASLKDGEKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGKEIKIAAAKIPAFKAGKALKDAVN 90 >gi|299533562|ref|ZP_07046938.1| integration host factor subunit alpha [Comamonas testosteroni S44] gi|298718468|gb|EFI59449.1| integration host factor subunit alpha [Comamonas testosteroni S44] Length = 108 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL+++++ V F+ I V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVDGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F ASS LK+ I + G Sbjct: 70 RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGESSG 107 >gi|269468958|gb|EEZ80539.1| histone family protein DNA-binding [uncultured SUP05 cluster bacterium] Length = 91 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +I++ GL++ D+ R + I + G+ + I+ F +F V+ + +R G Sbjct: 1 MNKSDLVAAIAETSGLTKADAARALDATTGAITSALSGGDNVAITGFGSFLVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I +V FKA +LK+ + Sbjct: 61 RNPQTGASIQIKASKVPAFKAGKLLKESVNK 91 >gi|238919015|ref|YP_002932529.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146] gi|238868583|gb|ACR68294.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I++ +S+ + R + + +S G+A+ + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAEGADISKAAAGRALDAFIASVTESVQEGDAVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEINIPAAKVPGFRAGKALKDAVN 90 >gi|163751872|ref|ZP_02159086.1| DNA-binding protein, HU family [Shewanella benthica KT99] gi|161328222|gb|EDP99386.1| DNA-binding protein, HU family [Shewanella benthica KT99] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + DS G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIATGADISKAAAGRALDSFIGAVTDSLKNGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI + FKA LK + Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAVN 90 >gi|27364627|ref|NP_760155.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6] gi|320155021|ref|YP_004187400.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O] gi|27360772|gb|AAO09682.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6] gi|319930333|gb|ADV85197.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O] Length = 90 Score = 134 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + N + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESVN 90 >gi|258513573|ref|YP_003189795.1| histone family protein DNA-binding protein [Desulfotomaculum acetoxidans DSM 771] gi|257777278|gb|ACV61172.1| histone family protein DNA-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 96 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S+++E L++KD+ + V + I + +GE +++ F TF +K + +R G Sbjct: 1 MNKADLISSVAEEAELTKKDAEKAVNGVLKCIEMALAKGEKVQLVGFGTFDIKYRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I+ V VFKA L+ + Sbjct: 61 RNPQTGEEIDIEAANVPVFKAGKDLRDAVE 90 >gi|226941667|ref|YP_002796741.1| integration host factor subunit alpha [Laribacter hongkongensis HLHK9] gi|226716594|gb|ACO75732.1| IhfA [Laribacter hongkongensis HLHK9] Length = 101 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + GLS+++S V + F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELADLLFDKVGLSKRESKDMVESFFEEIRVALEEGDSVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F AS LK + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKGMVE 92 >gi|261344361|ref|ZP_05972005.1| DNA-binding protein HU [Providencia rustigianii DSM 4541] gi|282567632|gb|EFB73167.1| DNA-binding protein HU [Providencia rustigianii DSM 4541] Length = 90 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + I DS +GEA+++ F TF V + +R G Sbjct: 1 MNKTELVDAIAESTDLTKTQAKSALEATLSAISDSLKKGEAVQLVGFGTFKVSHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V F A LK + Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKDAVK 90 >gi|259908572|ref|YP_002648928.1| integration host factor subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224964194|emb|CAX55701.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia pyrifoliae Ep1/96] gi|283478541|emb|CAY74457.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia pyrifoliae DSM 12163] gi|310767528|gb|ADP12478.1| integration host factor subunit alpha [Erwinia sp. Ejp617] Length = 99 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|209694401|ref|YP_002262329.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238] gi|208008352|emb|CAQ78507.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238] Length = 98 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+ +S LV I++ +S+ + R + L + ++ G+ + + F +F V+++ + Sbjct: 6 GNTVNKSQLVDQIAENADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFIVRERAA 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R GRN +T + ++I +V FKA LK Sbjct: 66 RTGRNPKTGEAIEISAAKVPAFKAGKALKDA 96 >gi|328467367|gb|EGF38445.1| DNA-binding protein II HB [Lactobacillus helveticus MTCC 5463] Length = 91 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 49/88 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++K+ + +F I D+ +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVASKTKLTKKEVAAAIDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT E++I V FK LK+ + Sbjct: 63 NPQTGDEIEIPASEVPAFKPGKALKEAV 90 >gi|152995752|ref|YP_001340587.1| histone family protein DNA-binding protein [Marinomonas sp. MWYL1] gi|150836676|gb|ABR70652.1| histone family protein DNA-binding protein [Marinomonas sp. MWYL1] Length = 90 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ ++ + I + +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADLSKASASNALDATLKAIEAALAKGDQVTLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGEEIQIKAAKVPGFKAGKGLKDAVN 90 >gi|254454267|ref|ZP_05067704.1| integration host factor, alpha subunit [Octadecabacter antarcticus 238] gi|198268673|gb|EDY92943.1| integration host factor, alpha subunit [Octadecabacter antarcticus 238] Length = 100 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 65/97 (67%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL ++ +E GLSR +S V ++ ++ D+ G+++KISSF TF ++ K +R Sbjct: 4 KTLTRMDLADAVHEEVGLSRNESADLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +GRN +T +EV I PRRV+ F+ S ++K R+ +G Sbjct: 64 IGRNPKTGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 100 >gi|126739445|ref|ZP_01755138.1| integration host factor, alpha subunit [Roseobacter sp. SK209-2-6] gi|254477557|ref|ZP_05090943.1| integration host factor, alpha subunit [Ruegeria sp. R11] gi|126719545|gb|EBA16254.1| integration host factor, alpha subunit [Roseobacter sp. SK209-2-6] gi|214031800|gb|EEB72635.1| integration host factor, alpha subunit [Ruegeria sp. R11] Length = 100 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 46/96 (47%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNR 99 >gi|118260|sp|P28080|DBHA_VIBPR RecName: Full=DNA-binding protein HU-alpha gi|141878|gb|AAA21939.1| histone-like protein [Vibrio proteolyticus] Length = 90 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK + Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDAVK 90 >gi|242240289|ref|YP_002988470.1| transcriptional regulator HU subunit beta [Dickeya dadantii Ech703] gi|242132346|gb|ACS86648.1| histone family protein DNA-binding protein [Dickeya dadantii Ech703] Length = 90 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKALKDAVN 90 >gi|260776379|ref|ZP_05885274.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450] gi|261253456|ref|ZP_05946029.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891] gi|323495053|ref|ZP_08100142.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546] gi|260607602|gb|EEX33867.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450] gi|260936847|gb|EEX92836.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891] gi|323310710|gb|EGA63885.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 47/87 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDAFIEAVGDTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKD 87 >gi|226953082|ref|ZP_03823546.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244] gi|294650671|ref|ZP_06728025.1| DNA-binding protein HU-beta family protein [Acinetobacter haemolyticus ATCC 19194] gi|226836174|gb|EEH68557.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244] gi|292823462|gb|EFF82311.1| DNA-binding protein HU-beta family protein [Acinetobacter haemolyticus ATCC 19194] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ G+S+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKASKVPSFKAGKGLKDSVA 90 >gi|289207761|ref|YP_003459827.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. K90mix] gi|288943392|gb|ADC71091.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. K90mix] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ E + + + R + + + D+ +G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIDAIAAEADVPKAQAGRMLDAMVTVVGDTLAKGDQVSLVGFGTFLVREREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T Q ++I + FKA LK R+ Sbjct: 61 RNPRTGQSIQIAASKTPSFKAGKALKDRVN 90 >gi|326316778|ref|YP_004234450.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373614|gb|ADX45883.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 136 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I++ F +F V ++ R+ Sbjct: 28 MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 87 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ + V I +RV FK L++ + D R + T S + Sbjct: 88 GRNPRSGEAVHIPEKRVPHFKPGKALREAV--DRRTAEMGIGAATDASDA 135 >gi|297616318|ref|YP_003701477.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297144155|gb|ADI00912.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ + +++KD + + TLF I ++ G +++ F TF V+++ +R G Sbjct: 1 MNKTDLVAKVASKANMTKKDVEKVINTLFATIEEALKDGSKVQLVGFGTFEVRERQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E++I R+ FKA LK + Sbjct: 61 RNPQTGEEIEIPAARIPAFKAGKALKDAV 89 >gi|127513142|ref|YP_001094339.1| integration host factor, alpha subunit [Shewanella loihica PV-4] gi|166918526|sp|A3QF32|IHFA_SHELP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|126638437|gb|ABO24080.1| integration host factor, alpha subunit [Shewanella loihica PV-4] Length = 98 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ + G+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAGK 98 >gi|71278524|ref|YP_269693.1| integration host factor subunit alpha [Colwellia psychrerythraea 34H] gi|123747380|sp|Q47ZS6|IHFA_COLP3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|71144264|gb|AAZ24737.1| integration host factor, alpha subunit [Colwellia psychrerythraea 34H] Length = 97 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 55/93 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F EI ++ G+ +K+S F F ++ K R Sbjct: 2 ALTKAEVAEHLFEKVGLSKRDAKDMVEIFFEEIRETLESGDQVKLSGFGNFDLRLKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I R+VV F+ LK R+ D Sbjct: 62 GRNPKTGEDIPISARKVVTFRPGQKLKSRVEDG 94 >gi|28899685|ref|NP_799290.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633] gi|260364000|ref|ZP_05776734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] gi|260878153|ref|ZP_05890508.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] gi|260897884|ref|ZP_05906380.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|28807937|dbj|BAC61174.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633] gi|308085528|gb|EFO35223.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|308090217|gb|EFO39912.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] gi|308115538|gb|EFO53078.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] Length = 91 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T E++I V F A LK+ D Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKEACND 91 >gi|170727450|ref|YP_001761476.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] gi|169812797|gb|ACA87381.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIEAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI + FKA LK + Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAVN 90 >gi|91228710|ref|ZP_01262623.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus 12G01] gi|262392956|ref|YP_003284810.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25] gi|269965869|ref|ZP_06179963.1| DNA-binding protein HU [Vibrio alginolyticus 40B] gi|91187736|gb|EAS74055.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus 12G01] gi|262336550|gb|ACY50345.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25] gi|269829533|gb|EEZ83773.1| DNA-binding protein HU [Vibrio alginolyticus 40B] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESVN 90 >gi|330009679|ref|ZP_08306553.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3] gi|328534767|gb|EGF61323.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3] Length = 94 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|312969741|ref|ZP_07783924.1| integration host factor, alpha subunit [Escherichia coli 1827-70] gi|310338026|gb|EFQ03115.1| integration host factor, alpha subunit [Escherichia coli 1827-70] Length = 99 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKNE 99 >gi|264679160|ref|YP_003279067.1| integration host factor, subunit alpha [Comamonas testosteroni CNB-2] gi|262209673|gb|ACY33771.1| integration host factor, alpha subunit [Comamonas testosteroni CNB-2] Length = 108 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 54/98 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + E GL+++++ V F+ I V GE +K+S F F ++ K Sbjct: 10 SPALTKAQLADLLFDEIGLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F ASS LK+ I + G Sbjct: 70 RPGRNPRTGELIPIAARRVVTFHASSKLKELIQGEGSG 107 >gi|254481702|ref|ZP_05094945.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2148] gi|214037831|gb|EEB78495.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2148] Length = 102 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S++ + + +E GL+++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRACLENNEQVKLSGFGNFDLRDKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F+ LK R+ + Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94 >gi|260583468|ref|ZP_05851216.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633] gi|260158094|gb|EEW93162.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633] Length = 92 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++K+ L++KD + V LF I ++ GE +++ F F V+++ +R GR Sbjct: 3 NKAELVDRVAKKTQLTKKDVSAAVDALFETIQEALQAGEKVQVIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N Q+ +E++I+ +V FKA LK + + Sbjct: 63 NPQSGEEIQIEASKVPAFKAGKALKDAVKN 92 >gi|262376135|ref|ZP_06069365.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145] gi|262308736|gb|EEY89869.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ GLS+ D+ + + + ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGLSKADAGKALDATIASVTEALKSGDTVTLVGFGTFGVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I +V FKA LK + Sbjct: 61 RNPQTGATLEIKASKVPSFKAGKGLKDAVA 90 >gi|153835692|ref|ZP_01988359.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|269961042|ref|ZP_06175411.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3] gi|148867673|gb|EDL66949.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|269834261|gb|EEZ88351.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88 >gi|229008753|ref|ZP_04166148.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228752514|gb|EEM02147.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] Length = 90 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + LS+KD+T V + ++I + + E++++ F TF V+++ +R G Sbjct: 1 MNKTELINQVAVKSSLSKKDATASVQAILDQITKALQKEESVQLIGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V FKA LK+ + Sbjct: 61 RNPQTGEEMHIPGGKVPGFKAGKSLKEAVK 90 >gi|91787981|ref|YP_548933.1| integration host factor subunit alpha [Polaromonas sp. JS666] gi|123059944|sp|Q12BQ7|IHFA_POLSJ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91697206|gb|ABE44035.1| integration host factor, alpha subunit [Polaromonas sp. JS666] Length = 111 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 55/98 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + ++ GL++++S + F+ I DS V G +KIS F F ++ K Sbjct: 10 TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F AS LK +I D Sbjct: 70 RPGRNPRTGEAIPIQARRVVTFHASHKLKDQIQGDSAA 107 >gi|89095458|ref|ZP_01168369.1| DNA-binding protein HU [Oceanospirillum sp. MED92] gi|89080288|gb|EAR59549.1| DNA-binding protein HU [Oceanospirillum sp. MED92] Length = 91 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDATLEAVTGALQNGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I + FK LK + Sbjct: 61 RNPQTGKPIEIAAATLPTFKPGKALKDAVNK 91 >gi|296135851|ref|YP_003643093.1| integration host factor, alpha subunit [Thiomonas intermedia K12] gi|295795973|gb|ADG30763.1| integration host factor, alpha subunit [Thiomonas intermedia K12] Length = 115 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 57/94 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F+ + D+ RGE +K+S F F +++K Sbjct: 11 TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN +T + + I RRVV+F AS K ++ Sbjct: 71 RPGRNPRTGEIIPIAARRVVIFHASHKFKHQLQG 104 >gi|225627276|ref|ZP_03785313.1| integration host factor, alpha subunit [Brucella ceti str. Cudo] gi|237815217|ref|ZP_04594215.1| integration host factor, alpha subunit [Brucella abortus str. 2308 A] gi|297248134|ref|ZP_06931852.1| integration host factor subunit alpha [Brucella abortus bv. 5 str. B3196] gi|306841978|ref|ZP_07474652.1| integration host factor, alpha subunit [Brucella sp. BO2] gi|225617281|gb|EEH14326.1| integration host factor, alpha subunit [Brucella ceti str. Cudo] gi|237790054|gb|EEP64264.1| integration host factor, alpha subunit [Brucella abortus str. 2308 A] gi|297175303|gb|EFH34650.1| integration host factor subunit alpha [Brucella abortus bv. 5 str. B3196] gi|306287906|gb|EFM59323.1| integration host factor, alpha subunit [Brucella sp. BO2] Length = 128 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 48/102 (47%), Positives = 74/102 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 24 GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 84 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 125 >gi|227358099|ref|ZP_03842441.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906] gi|227161834|gb|EEI46866.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906] Length = 96 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K++ ++ L+ I+ +++ + R V + I +S +G+ + + F TF V+ + +R Sbjct: 4 KSVNKTQLIDKIAANADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +E++I +V F+A LK + Sbjct: 64 TGRNPQTGKEIQIAAAKVPAFRAGKGLKDAVNQ 96 >gi|330445805|ref|ZP_08309457.1| integration host factor, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489996|dbj|GAA03954.1| integration host factor, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 98 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVE 92 >gi|91792960|ref|YP_562611.1| integration host factor, alpha subunit [Shewanella denitrificans OS217] gi|123356864|sp|Q12NT8|IHFA_SHEDO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91714962|gb|ABE54888.1| integration host factor, alpha subunit [Shewanella denitrificans OS217] Length = 99 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GL+++ + V + F EI ++ GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ G+K Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEAANSGKK 99 >gi|90962747|ref|YP_536662.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] gi|90821941|gb|ABE00579.1| DNA-binding protein HU [Lactobacillus salivarius UCC118] Length = 91 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+++ G ++K++ V+ + ++ V G+ ++I F F V+++ +R G Sbjct: 1 MNKNELVEAIAEKMGATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V FK LK + Sbjct: 61 RNPQTGKEIEIPASKVPAFKPGKGLKDAVNK 91 >gi|83647657|ref|YP_436092.1| integration host factor subunit beta [Hahella chejuensis KCTC 2396] gi|123767360|sp|Q2SCF7|IHFB_HAHCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|83635700|gb|ABC31667.1| integration host factor, beta subunit [Hahella chejuensis KCTC 2396] Length = 98 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+++ LS KD V T+ + S +G+ I+I F +F + + RV Sbjct: 1 MTKSELVEIIAQKQPQLSIKDVELAVKTIIEYMSQSLSQGQRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + V + + V FK L+ + ++ Sbjct: 61 GRNPKTGETVHLPAKYVPHFKPGKELRDEVNASLKA 96 >gi|121594811|ref|YP_986707.1| integration host factor subunit beta [Acidovorax sp. JS42] gi|222110590|ref|YP_002552854.1| integration host factor subunit beta [Acidovorax ebreus TPSY] gi|120606891|gb|ABM42631.1| integration host factor, beta subunit [Acidovorax sp. JS42] gi|221730034|gb|ACM32854.1| integration host factor, beta subunit [Acidovorax ebreus TPSY] Length = 103 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I+I F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVNRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALRETV 90 >gi|90413395|ref|ZP_01221388.1| putative DNA-binding protein HU-alpha [Photobacterium profundum 3TCK] gi|90325637|gb|EAS42106.1| putative DNA-binding protein HU-alpha [Photobacterium profundum 3TCK] Length = 90 Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDLIAEKADLSKAQAKLALESTLEGITGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE++I V F + LK + Sbjct: 61 RNPQTGQEIQIAAANVPAFVSGKALKDALK 90 >gi|297205895|ref|ZP_06923290.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16] gi|297149021|gb|EFH29319.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16] Length = 91 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++KD V +F I D +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVAEVAAKTKLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGVEIEIPASKVPAFKPGKALKDAVK 91 >gi|120554972|ref|YP_959323.1| integration host factor subunit alpha [Marinobacter aquaeolei VT8] gi|166918510|sp|A1U2B7|IHFA_MARAV RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120324821|gb|ABM19136.1| integration host factor, alpha subunit [Marinobacter aquaeolei VT8] Length = 100 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F+EI + E +K+S F F ++ K R Sbjct: 3 ALTKADMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK+++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKVE 93 >gi|152831|gb|AAA26558.1| integration host factor alpha-subunit [Serratia marcescens] Length = 98 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|262276275|ref|ZP_06054084.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886] gi|262220083|gb|EEY71399.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886] Length = 93 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 49/92 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +S L+ I++ LS+ + R + L + DS GE + + F TF V+++ +R Sbjct: 2 KKVNKSQLIDKIAENADLSKAAAGRALDALIEAVSDSLKEGEQVALVGFGTFSVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT E+KI +V FKA LK + Sbjct: 62 TGRNPQTGAEIKIAAAKVPGFKAGKALKDAVN 93 >gi|294340016|emb|CAZ88380.1| integration host factor (IHF), alpha subunit [Thiomonas sp. 3As] Length = 115 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 57/94 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F+ + D+ RGE +K+S F F +++K Sbjct: 11 TPTLTKAELAEQLYERIGLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQ 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN +T + + I RRVV+F AS K ++ Sbjct: 71 RPGRNPRTGEIIPIAARRVVIFHASHKFKHQLQG 104 >gi|116513919|ref|YP_812825.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093234|gb|ABJ58387.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 91 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++KD + V +F I + +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I + FK LK + Sbjct: 63 NPQTGAEIEIPASKGPAFKPGKALKDAVK 91 >gi|228925137|ref|ZP_04088247.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834476|gb|EEM80005.1| DNA-binding protein HU [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 93 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K I+++ L++KD+ + + I ++ GE ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|110834074|ref|YP_692933.1| DNA-binding protein HU [Alcanivorax borkumensis SK2] gi|110647185|emb|CAL16661.1| DNA-binding protein HU [Alcanivorax borkumensis SK2] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ D+ R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT Q +KI V FKA LK + Sbjct: 61 RNPQTGQTIKIAAANVPGFKAGKALKDAVN 90 >gi|28897694|ref|NP_797299.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD 2210633] gi|91228614|ref|ZP_01262532.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01] gi|260366278|ref|ZP_05778734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] gi|260898293|ref|ZP_05906789.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|260901514|ref|ZP_05909909.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|262394812|ref|YP_003286666.1| DNA-binding protein HU-beta [Vibrio sp. Ex25] gi|269965577|ref|ZP_06179691.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B] gi|28805907|dbj|BAC59183.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD 2210633] gi|91187846|gb|EAS74160.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01] gi|262338406|gb|ACY52201.1| DNA-binding protein HU-beta [Vibrio sp. Ex25] gi|269829802|gb|EEZ84037.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B] gi|308088436|gb|EFO38131.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466] gi|308110870|gb|EFO48410.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|308114045|gb|EFO51585.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030] gi|328473323|gb|EGF44171.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 10329] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKDA 88 >gi|121997236|ref|YP_001002023.1| integration host factor subunit alpha [Halorhodospira halophila SL1] gi|166918508|sp|A1WU59|IHFA_HALHL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|121588641|gb|ABM61221.1| integration host factor, alpha subunit [Halorhodospira halophila SL1] Length = 101 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 57/98 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++D+ + + +E GL+++++ V F EI + GE +K+SSF F ++ K R Sbjct: 2 SLTKADMAERLFEEVGLNKREAKELVELFFEEIRTALENGEPVKLSSFGNFELRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK R+ R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKSRVESYAGTRE 99 >gi|218710870|ref|YP_002418491.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32] gi|218323889|emb|CAV20250.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32] Length = 110 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + D+ G+ +++ F TF V + +R G Sbjct: 21 MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 80 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK + Sbjct: 81 RNPKTGDEIQIAAANVPAFVAGKALKDSVK 110 >gi|228911916|ref|ZP_04075657.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] gi|228924999|ref|ZP_04088129.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834662|gb|EEM80171.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228847725|gb|EEM92638.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200] Length = 93 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ L + I ++ G+ ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|228994795|ref|ZP_04154593.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] gi|228998490|ref|ZP_04158078.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|229005965|ref|ZP_04163656.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228755282|gb|EEM04636.1| DNA-binding protein HU [Bacillus mycoides Rock1-4] gi|228761215|gb|EEM10173.1| DNA-binding protein HU [Bacillus mycoides Rock3-17] gi|228764903|gb|EEM13659.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K++++ +S+K++T V ++ I ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKTELIKNVAQTAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKEAVK 90 >gi|192361790|ref|YP_001982469.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107] gi|190687955|gb|ACE85633.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++I+ + + + R + + I + G+++ + F TF VK++ +R G Sbjct: 1 MNKTELIEAIAASADIPKAAAGRALDAVVESITGALKNGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V FKA LK + Sbjct: 61 RNPQTGEEIKIAAAKVPGFKAGKALKDAVN 90 >gi|119945204|ref|YP_942884.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37] gi|119863808|gb|ABM03285.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37] Length = 91 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +I++ +S+ + R + + + V G+ + + F F VK++ +R G Sbjct: 1 MNKGQLIDNIAESADISKAAAGRALDAFIESVTGALVEGDNVSLIGFGAFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QTN+ ++I +V FKA LK I Sbjct: 61 RNPQTNEPIQIAAAKVPAFKAGKSLKDAIN 90 >gi|312884772|ref|ZP_07744473.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309367685|gb|EFP95236.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTGALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKESVN 90 >gi|291617253|ref|YP_003519995.1| IhfA [Pantoea ananatis LMG 20103] gi|291152283|gb|ADD76867.1| IhfA [Pantoea ananatis LMG 20103] gi|327393707|dbj|BAK11129.1| integration host factor alpha- subunit IhfA [Pantoea ananatis AJ13355] Length = 100 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|326202457|ref|ZP_08192326.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] gi|325987575|gb|EGD48402.1| histone family protein DNA-binding protein [Clostridium papyrosolvens DSM 2782] Length = 91 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++++ GLS+KDS + + + + ++ G+ +++ F +F VKQ+ +R G Sbjct: 1 MNKSELVDKMAEKSGLSKKDSDKALNAMLESVEEALTSGDKVQLIGFGSFEVKQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + VFKA LK+ I Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMINK 91 >gi|183597477|ref|ZP_02958970.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC 25827] gi|188023227|gb|EDU61267.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC 25827] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I ++ +GE +++ F TF V + R G Sbjct: 1 MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I V F A LK+ + Sbjct: 61 RNPQTREEITIPATNVPAFSAGKALKEAVK 90 >gi|400046|sp|P23302|IHFA_SERMA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Length = 99 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 55/98 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKGE 99 >gi|326943503|gb|AEA19396.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K I+++ L++KD+ + + I ++ GE ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVIAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90 >gi|37524501|ref|NP_927845.1| Na-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783925|emb|CAE12787.1| NA-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I +S G+++++ F TF V + R G Sbjct: 1 MNKTELVDAIAESTELTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I V F A LK + Sbjct: 61 RNPQTGKEITIAAANVPAFSAGKALKDAVK 90 >gi|331007938|ref|ZP_08331000.1| Integration host factor alpha subunit [gamma proteobacterium IMCC1989] gi|330418251|gb|EGG92855.1| Integration host factor alpha subunit [gamma proteobacterium IMCC1989] Length = 106 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 53/98 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + +E G +++++ V F EI ++ E +K+S F F ++ K R Sbjct: 9 ALTKAELAEKLYEELGFNKREAKELVELFFEEIRNALESNEQVKLSGFGNFDLRDKKQRP 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK R+ K Sbjct: 69 GRNPKTGEEIPISARRVVTFRPGQKLKARVEAHAGTNK 106 >gi|304405810|ref|ZP_07387468.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] gi|304345053|gb|EFM10889.1| histone family protein DNA-binding protein [Paenibacillus curdlanolyticus YK9] Length = 90 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ + GL+++D + E+ D+ G+ +++ F TF +++ R G Sbjct: 1 MNKTDLINNIATKSGLTKRDVEAVLNGFLGEVTDALASGDKVQLIGFGTFETRKRSGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I +V FKA + LK I Sbjct: 61 RNPQTGNPIEIAESKVPAFKAGNKLKDAIK 90 >gi|237731275|ref|ZP_04561756.1| integration host factor subunit alpha [Citrobacter sp. 30_2] gi|283833385|ref|ZP_06353126.1| integration host factor, alpha subunit [Citrobacter youngae ATCC 29220] gi|226906814|gb|EEH92732.1| integration host factor subunit alpha [Citrobacter sp. 30_2] gi|291071034|gb|EFE09143.1| integration host factor, alpha subunit [Citrobacter youngae ATCC 29220] Length = 99 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKEE 99 >gi|326796011|ref|YP_004313831.1| Integration host factor subunit beta [Marinomonas mediterranea MMB-1] gi|326546775|gb|ADZ91995.1| Integration host factor subunit beta [Marinomonas mediterranea MMB-1] Length = 101 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I ++ L KD + + + + +S GE I+I F +F + + RV Sbjct: 1 MTKSELIEMLIDQQSHLPVKDVELAIKAVLDHMSESLANGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM-DDMRGRKCN 103 GRN +T + V++ + V FK L++ + DD + N Sbjct: 61 GRNPKTGESVELTAKYVPHFKPGKELRELVNLDDTAHHELN 101 >gi|254509429|ref|ZP_05121509.1| integration host factor, alpha subunit [Vibrio parahaemolyticus 16] gi|219547647|gb|EED24692.1| integration host factor, alpha subunit [Vibrio parahaemolyticus 16] Length = 98 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKHGFSKRDAKETVEAFFEEVRKALEGGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|16760555|ref|NP_456172.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764690|ref|NP_460305.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141684|ref|NP_805026.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413674|ref|YP_150749.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179928|ref|YP_216345.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157145985|ref|YP_001453304.1| integration host factor subunit alpha [Citrobacter koseri ATCC BAA-895] gi|161614253|ref|YP_001588218.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551702|ref|ZP_02345456.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994355|ref|ZP_02575447.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233523|ref|ZP_02658581.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239546|ref|ZP_02664604.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240842|ref|ZP_02665774.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263840|ref|ZP_02685813.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463260|ref|ZP_02697191.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822198|ref|ZP_02834198.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443596|ref|YP_002040596.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447585|ref|YP_002045346.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469176|ref|ZP_03075160.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736601|ref|YP_002114356.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249705|ref|YP_002146698.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265740|ref|ZP_03165814.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362598|ref|YP_002142235.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244241|ref|YP_002215787.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390104|ref|ZP_03216715.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927937|ref|ZP_03219138.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352938|ref|YP_002226739.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857154|ref|YP_002243805.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022625|ref|ZP_03337072.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213160963|ref|ZP_03346673.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213421813|ref|ZP_03354879.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426326|ref|ZP_03359076.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586389|ref|ZP_03368215.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213618534|ref|ZP_03372360.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857558|ref|ZP_03384529.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584149|ref|YP_002637947.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910845|ref|ZP_04654682.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289806332|ref|ZP_06536961.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|60392433|sp|P0A1S0|IHFA_SALTY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|60392434|sp|P0A1S1|IHFA_SALTI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|75505782|sp|Q57PU7|IHFA_SALCH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81677883|sp|Q5PH86|IHFA_SALPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918501|sp|A8AHA5|IHFA_CITK8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044706|sp|A9N236|IHFA_SALPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709745|sp|B5F7F6|IHFA_SALA4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709746|sp|B5FJA2|IHFA_SALDC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709747|sp|B5QVW2|IHFA_SALEP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709748|sp|B5RAW7|IHFA_SALG2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709749|sp|B4TGH7|IHFA_SALHS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709750|sp|B4T4N4|IHFA_SALNS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709751|sp|B5BA36|IHFA_SALPK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709752|sp|B4TUF6|IHFA_SALSV RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803520|sp|C0Q640|IHFA_SALPC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|25294356|pir||AD0705 integration host factor alpha-chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419858|gb|AAL20264.1| integration host factor (IHF), alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502851|emb|CAD02013.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29137312|gb|AAO68875.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127931|gb|AAV77437.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127561|gb|AAX65264.1| integration host factor (IHF), alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157083190|gb|ABV12868.1| hypothetical protein CKO_01739 [Citrobacter koseri ATCC BAA-895] gi|161363617|gb|ABX67385.1| hypothetical protein SPAB_01998 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402259|gb|ACF62481.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405889|gb|ACF66108.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455540|gb|EDX44379.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712103|gb|ACF91324.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634129|gb|EDX52481.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094075|emb|CAR59575.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213408|gb|ACH50805.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243995|gb|EDY26615.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287774|gb|EDY27164.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938757|gb|ACH76090.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602549|gb|EDZ01095.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323279|gb|EDZ08475.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272719|emb|CAR37635.1| Integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323612|gb|EDZ11451.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327760|gb|EDZ14524.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332324|gb|EDZ19088.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339460|gb|EDZ26224.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341281|gb|EDZ28045.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347544|gb|EDZ34175.1| integration host factor, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708957|emb|CAR33287.1| Integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468676|gb|ACN46506.1| integration host factor alpha subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246548|emb|CBG24358.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993220|gb|ACY88105.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157876|emb|CBW17370.1| integration host factor alpha-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912324|dbj|BAJ36298.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086181|emb|CBY95955.1| Integration host factor subunit alpha IHF-alpha [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223967|gb|EFX49030.1| Integration host factor alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616724|gb|EFY13633.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620017|gb|EFY16890.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622327|gb|EFY19172.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627851|gb|EFY24641.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633051|gb|EFY29794.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636703|gb|EFY33406.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641271|gb|EFY37912.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645260|gb|EFY41789.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650201|gb|EFY46615.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655775|gb|EFY52077.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660101|gb|EFY56340.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665332|gb|EFY61520.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669590|gb|EFY65738.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673516|gb|EFY69618.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677442|gb|EFY73506.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679893|gb|EFY75932.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687365|gb|EFY83337.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714394|gb|EFZ05965.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129610|gb|ADX17040.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192483|gb|EFZ77713.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198662|gb|EFZ83763.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204090|gb|EFZ89104.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208709|gb|EFZ93647.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210222|gb|EFZ95121.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217685|gb|EGA02400.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220078|gb|EGA04545.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223495|gb|EGA07821.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229487|gb|EGA13610.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232710|gb|EGA16806.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240251|gb|EGA24295.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242761|gb|EGA26782.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249077|gb|EGA32996.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252784|gb|EGA36621.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255606|gb|EGA39362.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260117|gb|EGA43742.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267119|gb|EGA50604.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271557|gb|EGA54978.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623534|gb|EGE29879.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628011|gb|EGE34354.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988227|gb|AEF07210.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 99 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE 99 >gi|15802124|ref|NP_288146.1| integration host factor subunit alpha [Escherichia coli O157:H7 EDL933] gi|15831673|ref|NP_310446.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|16129668|ref|NP_416227.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|24112892|ref|NP_707402.1| integration host factor subunit alpha [Shigella flexneri 2a str. 301] gi|26247964|ref|NP_754004.1| integration host factor subunit alpha [Escherichia coli CFT073] gi|30063021|ref|NP_837192.1| integration host factor subunit alpha [Shigella flexneri 2a str. 2457T] gi|74311968|ref|YP_310387.1| integration host factor subunit alpha [Shigella sonnei Ss046] gi|82543885|ref|YP_407832.1| integration host factor subunit alpha [Shigella boydii Sb227] gi|82777060|ref|YP_403409.1| integration host factor subunit alpha [Shigella dysenteriae Sd197] gi|89108552|ref|AP_002332.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|91210926|ref|YP_540912.1| integration host factor subunit alpha [Escherichia coli UTI89] gi|110641834|ref|YP_669564.1| integration host factor subunit alpha [Escherichia coli 536] gi|110805478|ref|YP_688998.1| integration host factor subunit alpha [Shigella flexneri 5 str. 8401] gi|157159273|ref|YP_001463009.1| integration host factor subunit alpha [Escherichia coli E24377A] gi|168749471|ref|ZP_02774493.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168756713|ref|ZP_02781720.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168762224|ref|ZP_02787231.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168770473|ref|ZP_02795480.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168774987|ref|ZP_02799994.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168782127|ref|ZP_02807134.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168788108|ref|ZP_02813115.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|168800107|ref|ZP_02825114.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|170019938|ref|YP_001724892.1| integration host factor subunit alpha [Escherichia coli ATCC 8739] gi|170081371|ref|YP_001730691.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170681870|ref|YP_001743536.1| integration host factor subunit alpha [Escherichia coli SMS-3-5] gi|170768840|ref|ZP_02903293.1| integration host factor, alpha subunit [Escherichia albertii TW07627] gi|187732420|ref|YP_001880502.1| integration host factor subunit alpha [Shigella boydii CDC 3083-94] gi|188496090|ref|ZP_03003360.1| integration host factor, alpha subunit [Escherichia coli 53638] gi|191167868|ref|ZP_03029673.1| integration host factor, alpha subunit [Escherichia coli B7A] gi|191171631|ref|ZP_03033178.1| integration host factor, alpha subunit [Escherichia coli F11] gi|193065297|ref|ZP_03046369.1| integration host factor, alpha subunit [Escherichia coli E22] gi|193068941|ref|ZP_03049900.1| integration host factor, alpha subunit [Escherichia coli E110019] gi|194428516|ref|ZP_03061055.1| integration host factor, alpha subunit [Escherichia coli B171] gi|194435140|ref|ZP_03067374.1| integration host factor, alpha subunit [Shigella dysenteriae 1012] gi|194438513|ref|ZP_03070602.1| integration host factor, alpha subunit [Escherichia coli 101-1] gi|195937396|ref|ZP_03082778.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208810559|ref|ZP_03252435.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208816579|ref|ZP_03257699.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208820964|ref|ZP_03261284.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209399095|ref|YP_002270782.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209919072|ref|YP_002293156.1| integration host factor subunit alpha [Escherichia coli SE11] gi|215486931|ref|YP_002329362.1| integration host factor subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|217328779|ref|ZP_03444860.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218548716|ref|YP_002382507.1| integration host factor subunit alpha [Escherichia fergusonii ATCC 35469] gi|218554280|ref|YP_002387193.1| integration host factor subunit alpha [Escherichia coli IAI1] gi|218558582|ref|YP_002391495.1| integration host factor subunit alpha [Escherichia coli S88] gi|218689657|ref|YP_002397869.1| integration host factor subunit alpha [Escherichia coli ED1a] gi|218695274|ref|YP_002402941.1| integration host factor subunit alpha [Escherichia coli 55989] gi|218699720|ref|YP_002407349.1| integration host factor subunit alpha [Escherichia coli IAI39] gi|218705212|ref|YP_002412731.1| integration host factor subunit alpha [Escherichia coli UMN026] gi|227885866|ref|ZP_04003671.1| integration host factor subunit alpha [Escherichia coli 83972] gi|237705660|ref|ZP_04536141.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA] gi|238900927|ref|YP_002926723.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli BW2952] gi|253773333|ref|YP_003036164.1| integration host factor subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161772|ref|YP_003044880.1| integration host factor subunit alpha [Escherichia coli B str. REL606] gi|254793329|ref|YP_003078166.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|256018094|ref|ZP_05431959.1| integration host factor subunit alpha [Shigella sp. D9] gi|256022624|ref|ZP_05436489.1| integration host factor subunit alpha [Escherichia sp. 4_1_40B] gi|260844064|ref|YP_003221842.1| integration host factor, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|260855578|ref|YP_003229469.1| integration host factor, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|260868239|ref|YP_003234641.1| integration host factor, alpha subunit [Escherichia coli O111:H- str. 11128] gi|261227795|ref|ZP_05942076.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258040|ref|ZP_05950573.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. FRIK966] gi|283785064|ref|YP_003364929.1| Integration host factor alpha subunit [Citrobacter rodentium ICC168] gi|291282892|ref|YP_003499710.1| Integration host factor subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|293405211|ref|ZP_06649203.1| integration host factor subunit alpha [Escherichia coli FVEC1412] gi|293410028|ref|ZP_06653604.1| integration host factor [Escherichia coli B354] gi|293415031|ref|ZP_06657674.1| integration host factor [Escherichia coli B185] gi|293446087|ref|ZP_06662509.1| integration host factor [Escherichia coli B088] gi|297516677|ref|ZP_06935063.1| integration host factor subunit alpha [Escherichia coli OP50] gi|298380854|ref|ZP_06990453.1| integration host factor subunit alpha [Escherichia coli FVEC1302] gi|300818351|ref|ZP_07098561.1| integration host factor, alpha subunit [Escherichia coli MS 107-1] gi|300821414|ref|ZP_07101561.1| integration host factor, alpha subunit [Escherichia coli MS 119-7] gi|300898500|ref|ZP_07116837.1| integration host factor, alpha subunit [Escherichia coli MS 198-1] gi|300904568|ref|ZP_07122405.1| integration host factor, alpha subunit [Escherichia coli MS 84-1] gi|300917726|ref|ZP_07134375.1| integration host factor, alpha subunit [Escherichia coli MS 115-1] gi|300924754|ref|ZP_07140696.1| integration host factor, alpha subunit [Escherichia coli MS 182-1] gi|300930812|ref|ZP_07146184.1| integration host factor, alpha subunit [Escherichia coli MS 187-1] gi|300938954|ref|ZP_07153655.1| integration host factor, alpha subunit [Escherichia coli MS 21-1] gi|300951312|ref|ZP_07165156.1| integration host factor, alpha subunit [Escherichia coli MS 116-1] gi|300958601|ref|ZP_07170726.1| integration host factor, alpha subunit [Escherichia coli MS 175-1] gi|300987621|ref|ZP_07178293.1| integration host factor, alpha subunit [Escherichia coli MS 200-1] gi|300994425|ref|ZP_07180930.1| integration host factor, alpha subunit [Escherichia coli MS 45-1] gi|301025263|ref|ZP_07188828.1| integration host factor, alpha subunit [Escherichia coli MS 196-1] gi|301026993|ref|ZP_07190380.1| integration host factor, alpha subunit [Escherichia coli MS 69-1] gi|301050951|ref|ZP_07197800.1| integration host factor, alpha subunit [Escherichia coli MS 185-1] gi|301306645|ref|ZP_07212704.1| integration host factor, alpha subunit [Escherichia coli MS 124-1] gi|301327442|ref|ZP_07220677.1| integration host factor, alpha subunit [Escherichia coli MS 78-1] gi|301647903|ref|ZP_07247680.1| integration host factor, alpha subunit [Escherichia coli MS 146-1] gi|306815034|ref|ZP_07449190.1| integration host factor subunit alpha [Escherichia coli NC101] gi|307138372|ref|ZP_07497728.1| integration host factor subunit alpha [Escherichia coli H736] gi|307310717|ref|ZP_07590363.1| integration host factor, alpha subunit [Escherichia coli W] gi|309788459|ref|ZP_07683063.1| integration host factor, alpha subunit [Shigella dysenteriae 1617] gi|309793482|ref|ZP_07687909.1| integration host factor, alpha subunit [Escherichia coli MS 145-7] gi|312966915|ref|ZP_07781133.1| integration host factor, alpha subunit [Escherichia coli 2362-75] gi|331642310|ref|ZP_08343445.1| integration host factor, alpha subunit [Escherichia coli H736] gi|331647204|ref|ZP_08348298.1| integration host factor, alpha subunit [Escherichia coli M605] gi|331653113|ref|ZP_08354118.1| integration host factor, alpha subunit [Escherichia coli M718] gi|331657693|ref|ZP_08358655.1| integration host factor, alpha subunit [Escherichia coli TA206] gi|331663192|ref|ZP_08364102.1| integration host factor, alpha subunit [Escherichia coli TA143] gi|331668398|ref|ZP_08369246.1| integration host factor, alpha subunit [Escherichia coli TA271] gi|331673265|ref|ZP_08374033.1| integration host factor, alpha subunit [Escherichia coli TA280] gi|331677586|ref|ZP_08378261.1| integration host factor, alpha subunit [Escherichia coli H591] gi|331683219|ref|ZP_08383820.1| integration host factor, alpha subunit [Escherichia coli H299] gi|332279137|ref|ZP_08391550.1| integration host factor subunit alpha [Shigella sp. D9] gi|67466106|sp|P0A6X7|IHFA_ECOLI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|67466109|sp|P0A6X8|IHFA_ECOL6 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|67466110|sp|P0A6X9|IHFA_ECO57 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|67466111|sp|P0A6Y0|IHFA_SHIFL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|122958311|sp|Q0THB6|IHFA_ECOL5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123084460|sp|Q1RB83|IHFA_ECOUT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123342866|sp|Q0T4S2|IHFA_SHIF8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123742132|sp|Q32FI7|IHFA_SHIDS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123769448|sp|Q321K4|IHFA_SHIBS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123773516|sp|Q3Z260|IHFA_SHISS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918502|sp|A7ZMI0|IHFA_ECO24 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044701|sp|B1IPL5|IHFA_ECOLC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707374|sp|B7MAS3|IHFA_ECO45 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707854|sp|B5YQ00|IHFA_ECO5E RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709722|sp|B7NT64|IHFA_ECO7I RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709723|sp|B7M1C1|IHFA_ECO8A RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709724|sp|B1XG19|IHFA_ECODH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709725|sp|B7N550|IHFA_ECOLU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709726|sp|B6I8Q5|IHFA_ECOSE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709727|sp|B1LE18|IHFA_ECOSM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709729|sp|B7LQ77|IHFA_ESCF3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709755|sp|B2U390|IHFA_SHIB3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803514|sp|B7US95|IHFA_ECO27 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803515|sp|B7L6I5|IHFA_ECO55 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803516|sp|B7MVJ1|IHFA_ECO81 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|259491530|sp|C4ZYH4|IHFA_ECOBW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1942275|pdb|1IHF|A Chain A, Integration Host FactorDNA COMPLEX gi|34811459|pdb|1OUZ|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With A Variant H' Site (T44a) gi|34811464|pdb|1OWF|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With The Native H' Site gi|34811469|pdb|1OWG|A Chain A, Crystal Structure Of Wt Ihf Complexed With An Altered H' Site (T44a) gi|119389941|pdb|2HT0|A Chain A, Ihf Bound To Doubly Nicked Dna gi|12515723|gb|AAG56699.1|AE005394_8 integration host factor (IHF), alpha subunit; site specific recombination [Escherichia coli O157:H7 str. EDL933] gi|26108367|gb|AAN80569.1|AE016761_144 Integration host factor alpha-subunit [Escherichia coli CFT073] gi|43072|emb|CAA23566.1| unnamed protein product [Escherichia coli] gi|146347|gb|AAA51471.1| integration host factor alpha subunit [Escherichia coli] gi|1742792|dbj|BAA15480.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|1788005|gb|AAC74782.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|13361886|dbj|BAB35842.1| integration host factor IHF alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|24051836|gb|AAN43109.1| integration host factor (IHF), alpha subunit [Shigella flexneri 2a str. 301] gi|30041270|gb|AAP16999.1| integration host factor (IHF), alpha subunit [Shigella flexneri 2a str. 2457T] gi|68304092|gb|AAY89704.1| IhfA [Escherichia coli LW1655F+] gi|73855445|gb|AAZ88152.1| integration host factor (IHF), alpha subunit [Shigella sonnei Ss046] gi|81241208|gb|ABB61918.1| integration host factor, alpha subunit [Shigella dysenteriae Sd197] gi|81245296|gb|ABB66004.1| integration host factor, alpha subunit [Shigella boydii Sb227] gi|91072500|gb|ABE07381.1| integration host factor (IHF), alpha subunit [Escherichia coli UTI89] gi|110343426|gb|ABG69663.1| integration host factor alpha-subunit [Escherichia coli 536] gi|110615026|gb|ABF03693.1| integration host factor alpha subunit [Shigella flexneri 5 str. 8401] gi|157081303|gb|ABV21011.1| integration host factor, alpha subunit [Escherichia coli E24377A] gi|169754866|gb|ACA77565.1| integration host factor, alpha subunit [Escherichia coli ATCC 8739] gi|169889206|gb|ACB02913.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170122388|gb|EDS91319.1| integration host factor, alpha subunit [Escherichia albertii TW07627] gi|170519588|gb|ACB17766.1| integration host factor, alpha subunit [Escherichia coli SMS-3-5] gi|187429412|gb|ACD08686.1| integration host factor, alpha subunit [Shigella boydii CDC 3083-94] gi|187769469|gb|EDU33313.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188016292|gb|EDU54414.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|188491289|gb|EDU66392.1| integration host factor, alpha subunit [Escherichia coli 53638] gi|189000264|gb|EDU69250.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189356221|gb|EDU74640.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189360623|gb|EDU79042.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189367513|gb|EDU85929.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189371962|gb|EDU90378.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|189377579|gb|EDU95995.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|190902127|gb|EDV61871.1| integration host factor, alpha subunit [Escherichia coli B7A] gi|190907961|gb|EDV67553.1| integration host factor, alpha subunit [Escherichia coli F11] gi|192927091|gb|EDV81713.1| integration host factor, alpha subunit [Escherichia coli E22] gi|192957736|gb|EDV88180.1| integration host factor, alpha subunit [Escherichia coli E110019] gi|194413394|gb|EDX29677.1| integration host factor, alpha subunit [Escherichia coli B171] gi|194416604|gb|EDX32739.1| integration host factor, alpha subunit [Shigella dysenteriae 1012] gi|194422523|gb|EDX38521.1| integration host factor, alpha subunit [Escherichia coli 101-1] gi|195182902|dbj|BAG66472.1| alpha subunit of integration host factor [Escherichia coli O111:H-] gi|208725075|gb|EDZ74782.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208730922|gb|EDZ79611.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208741087|gb|EDZ88769.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209160495|gb|ACI37928.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209768898|gb|ACI82761.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768900|gb|ACI82762.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768902|gb|ACI82763.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768904|gb|ACI82764.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209768906|gb|ACI82765.1| integration host factor IHF alpha subunit [Escherichia coli] gi|209912331|dbj|BAG77405.1| integration host factor alpha subunit [Escherichia coli SE11] gi|215265003|emb|CAS09389.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli O127:H6 str. E2348/69] gi|217318126|gb|EEC26553.1| integration host factor, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218352006|emb|CAU97738.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli 55989] gi|218356257|emb|CAQ88874.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia fergusonii ATCC 35469] gi|218361048|emb|CAQ98625.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli IAI1] gi|218365351|emb|CAR03072.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli S88] gi|218369706|emb|CAR17475.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli IAI39] gi|218427221|emb|CAR08107.2| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli ED1a] gi|218432309|emb|CAR13199.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli UMN026] gi|222033468|emb|CAP76209.1| Integration host factor subunit alpha [Escherichia coli LF82] gi|226900417|gb|EEH86676.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA] gi|227837439|gb|EEJ47905.1| integration host factor subunit alpha [Escherichia coli 83972] gi|238861521|gb|ACR63519.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli BW2952] gi|242377435|emb|CAQ32187.1| integration host factor (IHF), alpha subunit, subunit of IHF transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253324377|gb|ACT28979.1| integration host factor, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973673|gb|ACT39344.1| integration host factor subunit alpha [Escherichia coli B str. REL606] gi|253977867|gb|ACT43537.1| integration host factor subunit alpha [Escherichia coli BL21(DE3)] gi|254592729|gb|ACT72090.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|257754227|dbj|BAI25729.1| integration host factor, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257759211|dbj|BAI30708.1| integration host factor, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|257764595|dbj|BAI36090.1| integration host factor, alpha subunit [Escherichia coli O111:H- str. 11128] gi|260449165|gb|ACX39587.1| integration host factor, alpha subunit [Escherichia coli DH1] gi|281178783|dbj|BAI55113.1| integration host factor alpha subunit [Escherichia coli SE15] gi|281600923|gb|ADA73907.1| Integration host factor subunit alpha [Shigella flexneri 2002017] gi|282948518|emb|CBG88107.1| Integration host factor alpha subunit [Citrobacter rodentium ICC168] gi|284921633|emb|CBG34705.1| Integration host factor alpha subunit [Escherichia coli 042] gi|290762765|gb|ADD56726.1| Integration host factor subunit alpha [Escherichia coli O55:H7 str. CB9615] gi|291322917|gb|EFE62345.1| integration host factor [Escherichia coli B088] gi|291427419|gb|EFF00446.1| integration host factor subunit alpha [Escherichia coli FVEC1412] gi|291432679|gb|EFF05658.1| integration host factor [Escherichia coli B185] gi|291470496|gb|EFF12980.1| integration host factor [Escherichia coli B354] gi|294490672|gb|ADE89428.1| integration host factor, alpha subunit [Escherichia coli IHE3034] gi|298278296|gb|EFI19810.1| integration host factor subunit alpha [Escherichia coli FVEC1302] gi|299880128|gb|EFI88339.1| integration host factor, alpha subunit [Escherichia coli MS 196-1] gi|300297405|gb|EFJ53790.1| integration host factor, alpha subunit [Escherichia coli MS 185-1] gi|300306101|gb|EFJ60621.1| integration host factor, alpha subunit [Escherichia coli MS 200-1] gi|300314726|gb|EFJ64510.1| integration host factor, alpha subunit [Escherichia coli MS 175-1] gi|300357852|gb|EFJ73722.1| integration host factor, alpha subunit [Escherichia coli MS 198-1] gi|300395233|gb|EFJ78771.1| integration host factor, alpha subunit [Escherichia coli MS 69-1] gi|300403481|gb|EFJ87019.1| integration host factor, alpha subunit [Escherichia coli MS 84-1] gi|300406271|gb|EFJ89809.1| integration host factor, alpha subunit [Escherichia coli MS 45-1] gi|300415127|gb|EFJ98437.1| integration host factor, alpha subunit [Escherichia coli MS 115-1] gi|300419042|gb|EFK02353.1| integration host factor, alpha subunit [Escherichia coli MS 182-1] gi|300449409|gb|EFK13029.1| integration host factor, alpha subunit [Escherichia coli MS 116-1] gi|300456153|gb|EFK19646.1| integration host factor, alpha subunit [Escherichia coli MS 21-1] gi|300461370|gb|EFK24863.1| integration host factor, alpha subunit [Escherichia coli MS 187-1] gi|300525917|gb|EFK46986.1| integration host factor, alpha subunit [Escherichia coli MS 119-7] gi|300528991|gb|EFK50053.1| integration host factor, alpha subunit [Escherichia coli MS 107-1] gi|300838107|gb|EFK65867.1| integration host factor, alpha subunit [Escherichia coli MS 124-1] gi|300845954|gb|EFK73714.1| integration host factor, alpha subunit [Escherichia coli MS 78-1] gi|301073960|gb|EFK88766.1| integration host factor, alpha subunit [Escherichia coli MS 146-1] gi|305851682|gb|EFM52135.1| integration host factor subunit alpha [Escherichia coli NC101] gi|306908895|gb|EFN39391.1| integration host factor, alpha subunit [Escherichia coli W] gi|307553734|gb|ADN46509.1| integration host factor [Escherichia coli ABU 83972] gi|307626801|gb|ADN71105.1| integration host factor subunit alpha [Escherichia coli UM146] gi|308123069|gb|EFO60331.1| integration host factor, alpha subunit [Escherichia coli MS 145-7] gi|308923841|gb|EFP69344.1| integration host factor, alpha subunit [Shigella dysenteriae 1617] gi|309701936|emb|CBJ01249.1| Integration host factor alpha subunit [Escherichia coli ETEC H10407] gi|312288379|gb|EFR16281.1| integration host factor, alpha subunit [Escherichia coli 2362-75] gi|312946313|gb|ADR27140.1| integration host factor subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|313649266|gb|EFS13700.1| integration host factor, alpha subunit [Shigella flexneri 2a str. 2457T] gi|315061017|gb|ADT75344.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Escherichia coli W] gi|315136353|dbj|BAJ43512.1| integration host factor subunit alpha [Escherichia coli DH1] gi|315257483|gb|EFU37451.1| integration host factor, alpha subunit [Escherichia coli MS 85-1] gi|315286439|gb|EFU45874.1| integration host factor, alpha subunit [Escherichia coli MS 110-3] gi|315290473|gb|EFU49847.1| integration host factor, alpha subunit [Escherichia coli MS 153-1] gi|315299755|gb|EFU58995.1| integration host factor, alpha subunit [Escherichia coli MS 16-3] gi|315618909|gb|EFU99492.1| integration host factor, alpha subunit [Escherichia coli 3431] gi|320173204|gb|EFW48415.1| Integration host factor alpha subunit [Shigella dysenteriae CDC 74-1112] gi|320181259|gb|EFW56178.1| Integration host factor alpha subunit [Shigella boydii ATCC 9905] gi|320185864|gb|EFW60615.1| Integration host factor alpha subunit [Shigella flexneri CDC 796-83] gi|320188400|gb|EFW63062.1| Integration host factor alpha subunit [Escherichia coli O157:H7 str. EC1212] gi|320194576|gb|EFW69207.1| Integration host factor alpha subunit [Escherichia coli WV_060327] gi|320197896|gb|EFW72504.1| Integration host factor alpha subunit [Escherichia coli EC4100B] gi|320641561|gb|EFX10949.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. G5101] gi|320646920|gb|EFX15753.1| integration host factor subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320652202|gb|EFX20500.1| integration host factor subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320657803|gb|EFX25565.1| integration host factor subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658378|gb|EFX26072.1| integration host factor subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320668275|gb|EFX35102.1| integration host factor subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|323153050|gb|EFZ39319.1| integration host factor, alpha subunit [Escherichia coli EPECa14] gi|323158490|gb|EFZ44506.1| integration host factor, alpha subunit [Escherichia coli E128010] gi|323169347|gb|EFZ55023.1| integration host factor, alpha subunit [Shigella sonnei 53G] gi|323175219|gb|EFZ60833.1| integration host factor, alpha subunit [Escherichia coli LT-68] gi|323180491|gb|EFZ66036.1| integration host factor, alpha subunit [Escherichia coli 1180] gi|323186271|gb|EFZ71623.1| integration host factor, alpha subunit [Escherichia coli 1357] gi|323186894|gb|EFZ72212.1| integration host factor, alpha subunit [Escherichia coli RN587/1] gi|323378411|gb|ADX50679.1| integration host factor, alpha subunit [Escherichia coli KO11] gi|323937315|gb|EGB33594.1| integration host protein [Escherichia coli E1520] gi|323940621|gb|EGB36812.1| integration host protein [Escherichia coli E482] gi|323948097|gb|EGB44088.1| integration host protein [Escherichia coli H120] gi|323952220|gb|EGB48093.1| integration host protein [Escherichia coli H252] gi|323956614|gb|EGB52352.1| integration host protein [Escherichia coli H263] gi|323962096|gb|EGB57692.1| integration host protein [Escherichia coli H489] gi|323968482|gb|EGB63888.1| integration host protein [Escherichia coli M863] gi|323973907|gb|EGB69079.1| integration host protein [Escherichia coli TA007] gi|323978104|gb|EGB73190.1| integration host protein [Escherichia coli TW10509] gi|324007099|gb|EGB76318.1| integration host factor, alpha subunit [Escherichia coli MS 57-2] gi|324011508|gb|EGB80727.1| integration host factor, alpha subunit [Escherichia coli MS 60-1] gi|324016465|gb|EGB85684.1| integration host factor, alpha subunit [Escherichia coli MS 117-3] gi|324113464|gb|EGC07439.1| integration host protein [Escherichia fergusonii B253] gi|324119198|gb|EGC13086.1| integration host protein [Escherichia coli E1167] gi|325497126|gb|EGC94985.1| integration host factor subunit alpha [Escherichia fergusonii ECD227] gi|326342080|gb|EGD65861.1| Integration host factor alpha subunit [Escherichia coli O157:H7 str. 1044] gi|326343632|gb|EGD67394.1| Integration host factor alpha subunit [Escherichia coli O157:H7 str. 1125] gi|327252829|gb|EGE64483.1| integration host factor, alpha subunit [Escherichia coli STEC_7v] gi|330911517|gb|EGH40027.1| integration host factor alpha subunit [Escherichia coli AA86] gi|331039108|gb|EGI11328.1| integration host factor, alpha subunit [Escherichia coli H736] gi|331043987|gb|EGI16123.1| integration host factor, alpha subunit [Escherichia coli M605] gi|331049211|gb|EGI21283.1| integration host factor, alpha subunit [Escherichia coli M718] gi|331055941|gb|EGI27950.1| integration host factor, alpha subunit [Escherichia coli TA206] gi|331058991|gb|EGI30968.1| integration host factor, alpha subunit [Escherichia coli TA143] gi|331063592|gb|EGI35503.1| integration host factor, alpha subunit [Escherichia coli TA271] gi|331069463|gb|EGI40850.1| integration host factor, alpha subunit [Escherichia coli TA280] gi|331074046|gb|EGI45366.1| integration host factor, alpha subunit [Escherichia coli H591] gi|331079434|gb|EGI50631.1| integration host factor, alpha subunit [Escherichia coli H299] gi|332090637|gb|EGI95732.1| integration host factor, alpha subunit [Shigella boydii 5216-82] gi|332093969|gb|EGI99022.1| integration host factor, alpha subunit [Shigella dysenteriae 155-74] gi|332096357|gb|EGJ01358.1| integration host factor, alpha subunit [Shigella boydii 3594-74] gi|332101489|gb|EGJ04835.1| integration host factor subunit alpha [Shigella sp. D9] gi|332343431|gb|AEE56765.1| integration host factor, alpha subunit IhfA [Escherichia coli UMNK88] gi|332758619|gb|EGJ88938.1| integration host factor, alpha subunit [Shigella flexneri 2747-71] gi|332762548|gb|EGJ92813.1| integration host factor, alpha subunit [Shigella flexneri 4343-70] gi|332767225|gb|EGJ97420.1| integration host factor, alpha subunit [Shigella flexneri 2930-71] gi|333003776|gb|EGK23312.1| integration host factor, alpha subunit [Shigella flexneri VA-6] gi|333004230|gb|EGK23761.1| integration host factor, alpha subunit [Shigella flexneri K-218] gi|333006576|gb|EGK26076.1| integration host factor, alpha subunit [Shigella flexneri K-272] gi|333018156|gb|EGK37458.1| integration host factor, alpha subunit [Shigella flexneri K-304] gi|333018795|gb|EGK38088.1| integration host factor, alpha subunit [Shigella flexneri K-227] Length = 99 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|156564019|ref|YP_001429759.1| DNA-binding HU protein [Bacillus phage 0305phi8-36] gi|154622716|gb|ABS83596.1| DNA-binding HU protein [Bacillus phage 0305phi8-36] Length = 111 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ +S+KD+T+ V +F I ++ G +++ F TF + + +R G Sbjct: 22 MNKTELINHVAETAEISKKDATKAVDAVFGGITNALAEGNKVQLIGFGTFETRDRAARKG 81 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 82 RNPQTGEEIEIAATKVPAFKAGKELKTAVK 111 >gi|218289480|ref|ZP_03493708.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|218240348|gb|EED07530.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius LAA1] Length = 91 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ +++ GLS+KD + LF+ I + GE ++I F TF ++++ +R Sbjct: 1 MNKRDLIRKTAEQTGLSQKDCEAVINALFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V++ RRV FK + LK+ + Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAVQ 90 >gi|254785577|ref|YP_003073006.1| integration host factor subunit alpha [Teredinibacter turnerae T7901] gi|237683400|gb|ACR10664.1| integration host factor, alpha subunit [Teredinibacter turnerae T7901] Length = 107 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +++T++DL +++ +E G +++++ V F EI ++ E +K+S F F ++ K R Sbjct: 10 ESLTKADLAENLYEELGFNKREAKELVEYFFEEIRNALENNEQVKLSGFGNFDLRDKKQR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 70 PGRNPKTGEEIPITARRVVTFRPGQKLKARVE 101 >gi|149374483|ref|ZP_01892257.1| integration host factor, alpha subunit [Marinobacter algicola DG893] gi|149361186|gb|EDM49636.1| integration host factor, alpha subunit [Marinobacter algicola DG893] gi|311693968|gb|ADP96841.1| integration host factor, alpha subunit [marine bacterium HP15] Length = 100 Score = 133 bits (337), Expect = 7e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F+EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK+++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKQKVE 93 >gi|227821546|ref|YP_002825516.1| integration host factor subunit alpha [Sinorhizobium fredii NGR234] gi|254803519|sp|C3M9J7|IHFA_RHISN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|227340545|gb|ACP24763.1| integration host factor, alpha subunit [Sinorhizobium fredii NGR234] Length = 112 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 51/110 (46%), Positives = 78/110 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE++K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 R+GRN +T +EV I PRRV+ FKAS++LK+R++ R+ + + S Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRRAKQKQTGTAS 112 >gi|264677561|ref|YP_003277467.1| integration host factor subunit beta [Comamonas testosteroni CNB-2] gi|299532471|ref|ZP_07045862.1| integration host factor, beta subunit [Comamonas testosteroni S44] gi|262208073|gb|ACY32171.1| integration host factor, beta subunit [Comamonas testosteroni CNB-2] gi|298719556|gb|EFI60522.1| integration host factor, beta subunit [Comamonas testosteroni S44] Length = 106 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 62/104 (59%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG I+I F +F + + R+ Sbjct: 1 MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ + V++ +RV FK L++ + D+++ Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAV-DNLKAEDSAAQQP 103 >gi|156934283|ref|YP_001438199.1| integration host factor subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|166918505|sp|A7MNY7|IHFA_ENTS8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|156532537|gb|ABU77363.1| hypothetical protein ESA_02114 [Cronobacter sakazakii ATCC BAA-894] Length = 99 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|313884094|ref|ZP_07817860.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8] gi|312620541|gb|EFR31964.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8] Length = 91 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV+ ++ + L++KD T V LF I ++ GE +++ F TF V+++ +R GR Sbjct: 3 NKAELVEQVAAKTNLTKKDVTATVEALFETIQETLANGEKVQVIGFGTFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGEEIEIAATKVPGFKAGKALKDAVK 91 >gi|260597643|ref|YP_003210214.1| integration host factor subunit alpha [Cronobacter turicensis z3032] gi|260216820|emb|CBA30309.1| Integration host factor subunit alpha [Cronobacter turicensis z3032] Length = 99 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|308049413|ref|YP_003912979.1| integration host factor, alpha subunit [Ferrimonas balearica DSM 9799] gi|307631603|gb|ADN75905.1| integration host factor, alpha subunit [Ferrimonas balearica DSM 9799] Length = 101 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 52/93 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + + GL ++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADMAEHLIETLGLHKRDAKDVVEAFFEEIRLALETGEQVKLSGFGNFELRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK RI + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKTRIEES 94 >gi|120553956|ref|YP_958307.1| integration host factor subunit beta [Marinobacter aquaeolei VT8] gi|166918554|sp|A1TZF1|IHFB_MARAV RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|120323805|gb|ABM18120.1| integration host factor, beta subunit [Marinobacter aquaeolei VT8] Length = 98 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+ K+ LS KD V ++ + S G+ I+I F +F + + +R Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKSIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V++ + V FK L++++ D M+ Sbjct: 61 GRNPKTGDAVQLPAKFVPHFKPGKELREQVNDSMK 95 >gi|331092508|ref|ZP_08341330.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA] gi|330400729|gb|EGG80332.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA] Length = 91 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ LS+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELITAVAENAELSKKDAEKALKAFVEVVTEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I +V FK LK + Sbjct: 61 RNPQTGKTMSIAACKVPKFKVGKALKDAVN 90 >gi|228949928|ref|ZP_04112122.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229060100|ref|ZP_04197470.1| DNA-binding protein HU [Bacillus cereus AH603] gi|229082875|ref|ZP_04215299.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228700413|gb|EEL52975.1| DNA-binding protein HU [Bacillus cereus Rock4-2] gi|228719140|gb|EEL70750.1| DNA-binding protein HU [Bacillus cereus AH603] gi|228809749|gb|EEM56176.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 93 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|152970723|ref|YP_001335832.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579803|ref|YP_002237980.1| integration host factor, alpha subunit [Klebsiella pneumoniae 342] gi|238895229|ref|YP_002919964.1| integration host factor subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|288934890|ref|YP_003438949.1| integration host factor, subunit alpha [Klebsiella variicola At-22] gi|290509032|ref|ZP_06548403.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55] gi|166918509|sp|A6TAI1|IHFA_KLEP7 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709730|sp|B5XQD2|IHFA_KLEP3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|150955572|gb|ABR77602.1| integration host factor alpha subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568861|gb|ACI10637.1| integration host factor, alpha subunit [Klebsiella pneumoniae 342] gi|238547546|dbj|BAH63897.1| integration host factor alpha subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|288889599|gb|ADC57917.1| integration host factor, alpha subunit [Klebsiella variicola At-22] gi|289778426|gb|EFD86423.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55] Length = 99 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + K Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDK 99 >gi|146341332|ref|YP_001206380.1| integration host factor subunit alpha [Bradyrhizobium sp. ORS278] gi|166918500|sp|A4YW83|IHFA_BRASO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|146194138|emb|CAL78159.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium sp. ORS278] Length = 119 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 51/108 (47%), Positives = 71/108 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 R+GRN +T EV I PRRV+VFK S+ILK+RI K N + S Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQANGKMNGESAPS 112 >gi|110633500|ref|YP_673708.1| integration host factor subunit alpha [Mesorhizobium sp. BNC1] gi|123058057|sp|Q11J82|IHFA_MESSB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|110284484|gb|ABG62543.1| integration host factor, alpha subunit [Chelativorans sp. BNC1] Length = 111 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 53/108 (49%), Positives = 78/108 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S + V + E+CD+ VRGE +K+SSFATF V++K Sbjct: 3 GKTVTRADLAEAVYRKVGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 RVGRN +T +EV I PRRV+ FKAS++LK RI+ + RK +K+ S Sbjct: 63 RVGRNPKTGEEVPISPRRVMTFKASNVLKSRILRAHQTRKPSKEATAS 110 >gi|157370390|ref|YP_001478379.1| integration host factor subunit alpha [Serratia proteamaculans 568] gi|270261563|ref|ZP_06189836.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13] gi|293396364|ref|ZP_06640642.1| integration host factor subunit alpha [Serratia odorifera DSM 4582] gi|166918522|sp|A8GDR1|IHFA_SERP5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157322154|gb|ABV41251.1| integration host factor, alpha subunit [Serratia proteamaculans 568] gi|270045047|gb|EFA18138.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13] gi|291421153|gb|EFE94404.1| integration host factor subunit alpha [Serratia odorifera DSM 4582] Length = 98 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|221197740|ref|ZP_03570786.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2M] gi|221204702|ref|ZP_03577719.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2] gi|221214897|ref|ZP_03587865.1| integration host factor, alpha subunit [Burkholderia multivorans CGD1] gi|221165124|gb|EED97602.1| integration host factor, alpha subunit [Burkholderia multivorans CGD1] gi|221175559|gb|EEE07989.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2] gi|221181672|gb|EEE14073.1| integration host factor, alpha subunit [Burkholderia multivorans CGD2M] Length = 114 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + GL+++++ V F I D+ GE++K+S F F ++ K Sbjct: 13 TPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQ 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS LK + + Sbjct: 73 RPGRNPKTGEAIPIAARRVVTFHASQKLKALVENG 107 >gi|156973715|ref|YP_001444622.1| nucleoid DNA-binding protein [Vibrio harveyi ATCC BAA-1116] gi|156525309|gb|ABU70395.1| hypothetical protein VIBHAR_01420 [Vibrio harveyi ATCC BAA-1116] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ +S+ + R + + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAENADISKASAGRALDAFIDAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T E++I +V FKA LK Sbjct: 61 RNPKTGDEIQIAEAKVPSFKAGKALKDA 88 >gi|220930448|ref|YP_002507357.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] gi|220000776|gb|ACL77377.1| histone family protein DNA-binding protein [Clostridium cellulolyticum H10] Length = 91 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ GL++KDS + + + + ++ G+ +++ F +F VKQ+ +R G Sbjct: 1 MNKSELIDKMAEKSGLTKKDSDKALNAMLESVEEALTGGDKVQLIGFGSFEVKQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + VFKA LK+ I Sbjct: 61 RNPQTMEEINIPESKAPVFKAGKDLKEMINK 91 >gi|99080754|ref|YP_612908.1| integration host factor subunit alpha [Ruegeria sp. TM1040] gi|123379018|sp|Q1GI70|IHFA_SILST RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|99037034|gb|ABF63646.1| integration host factor alpha subunit [Ruegeria sp. TM1040] Length = 100 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 46/96 (47%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR DL +++ +E GLSR +S + V ++ + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTITRMDLSEAVFREVGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ D + Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVADGNK 99 >gi|317047874|ref|YP_004115522.1| integration host factor subunit alpha [Pantoea sp. At-9b] gi|316949491|gb|ADU68966.1| integration host factor, alpha subunit [Pantoea sp. At-9b] Length = 100 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|146311386|ref|YP_001176460.1| integration host factor subunit alpha [Enterobacter sp. 638] gi|261339521|ref|ZP_05967379.1| integration host factor, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|166918504|sp|A4W9M9|IHFA_ENT38 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|145318262|gb|ABP60409.1| integration host factor, alpha subunit [Enterobacter sp. 638] gi|288318334|gb|EFC57272.1| integration host factor, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|295096105|emb|CBK85195.1| integration host factor, alpha subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 99 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKAE 99 >gi|238753681|ref|ZP_04615043.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC 29473] gi|238708233|gb|EEQ00589.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC 29473] Length = 98 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|311279402|ref|YP_003941633.1| integration host factor, alpha subunit [Enterobacter cloacae SCF1] gi|308748597|gb|ADO48349.1| integration host factor, alpha subunit [Enterobacter cloacae SCF1] Length = 99 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKAE 99 >gi|260772974|ref|ZP_05881890.1| integration host factor alpha subunit [Vibrio metschnikovii CIP 69.14] gi|260612113|gb|EEX37316.1| integration host factor alpha subunit [Vibrio metschnikovii CIP 69.14] Length = 98 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|126641682|ref|YP_001084666.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978] gi|169633492|ref|YP_001707228.1| DNA-binding protein HU-beta [Acinetobacter baumannii SDF] gi|169796090|ref|YP_001713883.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE] gi|184157983|ref|YP_001846322.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|213157177|ref|YP_002319222.1| DNA-binding protein HU [Acinetobacter baumannii AB0057] gi|215483545|ref|YP_002325764.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB307-0294] gi|239501896|ref|ZP_04661206.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB900] gi|260550155|ref|ZP_05824369.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260555139|ref|ZP_05827360.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC 19606] gi|262278966|ref|ZP_06056751.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202] gi|293608200|ref|ZP_06690503.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299770349|ref|YP_003732375.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1] gi|301347498|ref|ZP_07228239.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB056] gi|301511278|ref|ZP_07236515.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB058] gi|301597453|ref|ZP_07242461.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB059] gi|332851741|ref|ZP_08433666.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332865884|ref|ZP_08436664.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] gi|332874442|ref|ZP_08442345.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059] gi|126387566|gb|ABO12064.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978] gi|169149017|emb|CAM86894.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE] gi|169152284|emb|CAP01194.1| DNA-binding protein HU-beta [Acinetobacter baumannii] gi|183209577|gb|ACC56975.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|213056337|gb|ACJ41239.1| DNA-binding protein HU [Acinetobacter baumannii AB0057] gi|213986875|gb|ACJ57174.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii AB307-0294] gi|260406910|gb|EEX00389.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260411681|gb|EEX04978.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC 19606] gi|262259317|gb|EEY78050.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202] gi|292828773|gb|EFF87135.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298700437|gb|ADI91002.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1] gi|322508301|gb|ADX03755.1| hupB [Acinetobacter baumannii 1656-2] gi|323517927|gb|ADX92308.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715] gi|325122069|gb|ADY81592.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus PHEA-2] gi|332729748|gb|EGJ61083.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332734934|gb|EGJ66020.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] gi|332737286|gb|EGJ68210.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+++ G+S+ D+ + + I ++ +G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAEKGGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V FKA LK + Sbjct: 61 RNPKTGEELQIKATKVPSFKAGKGLKDSVA 90 >gi|149192496|ref|ZP_01870681.1| DNA-binding protein HU-beta [Vibrio shilonii AK1] gi|148833669|gb|EDL50721.1| DNA-binding protein HU-beta [Vibrio shilonii AK1] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDAFIEAVSTTLEEGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQISEAKVPAFKAGKALKDA 88 >gi|77919284|ref|YP_357099.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus DSM 2380] gi|77545367|gb|ABA88929.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus DSM 2380] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV +++++ GLS+ ++ + + + I ++ GE + + F TF V ++ +RVG Sbjct: 1 MTKADLVNAMAEKAGLSKAETEKAIKAFTDVITEALKAGEKVALVGFGTFSVGERAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT +++ I +V FK LK + Sbjct: 61 QNPQTGEKMNIPAAKVPKFKPGKALKDSVN 90 >gi|303239804|ref|ZP_07326328.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] gi|302592741|gb|EFL62465.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] Length = 91 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV S++++ LS+KD+ + + + ++ +G+ I++ F +F V+++ +R G Sbjct: 1 MNKTDLVASMAEKGDLSKKDAEKALNAFIESVEEALSQGDKIQLVGFGSFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + +FK LK + Sbjct: 61 RNPQTKEEINIPATKAPIFKVGKGLKDLVNK 91 >gi|290474660|ref|YP_003467540.1| DNA-binding protein HU-beta [Xenorhabdus bovienii SS-2004] gi|289173973|emb|CBJ80760.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Xenorhabdus bovienii SS-2004] Length = 96 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + D+ G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSDALKDGDDVVLVGFGTFTVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+KI +V F+A LK + + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAVNE 96 >gi|154505532|ref|ZP_02042270.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC 29149] gi|153794190|gb|EDN76610.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC 29149] Length = 91 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ +S+KD+ + + + + + GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAIAEQAEISKKDAEKALKAFVDVVTEQLKEGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + FKA LK + Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDAVN 90 >gi|149190645|ref|ZP_01868913.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1] gi|148835528|gb|EDL52497.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + ++ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLSGVSEALTEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I V F A LK + Sbjct: 61 RNPKTGEEIQIAAANVPAFVAGKALKDAVK 90 >gi|90410619|ref|ZP_01218635.1| integration host factor alpha subunit [Photobacterium profundum 3TCK] gi|90328860|gb|EAS45144.1| integration host factor alpha subunit [Photobacterium profundum 3TCK] Length = 98 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAEDLFENVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVE 92 >gi|153835064|ref|ZP_01987731.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|153838911|ref|ZP_01991578.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810] gi|260902149|ref|ZP_05910544.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|269959588|ref|ZP_06173969.1| DNA-binding protein HU [Vibrio harveyi 1DA3] gi|148868460|gb|EDL67566.1| DNA-binding protein HU-beta [Vibrio harveyi HY01] gi|149747619|gb|EDM58543.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810] gi|269835646|gb|EEZ89724.1| DNA-binding protein HU [Vibrio harveyi 1DA3] gi|308110155|gb|EFO47695.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037] gi|328471094|gb|EGF42000.1| DNA-binding protein [Vibrio parahaemolyticus 10329] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK+ + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKESVN 90 >gi|229170488|ref|ZP_04298139.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228612958|gb|EEK70132.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 90 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90 >gi|148244747|ref|YP_001219441.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii HA] gi|146326574|dbj|BAF61717.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii HA] Length = 91 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV IS+ L++ DS R + + I + G+ + I+ F +F V+ + +R G Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I +V FKA +LK+ + Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVN 90 >gi|119384600|ref|YP_915656.1| integration host factor, alpha subunit [Paracoccus denitrificans PD1222] gi|166918513|sp|A1B366|IHFA_PARDP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119374367|gb|ABL69960.1| integration host factor, alpha subunit [Paracoccus denitrificans PD1222] Length = 102 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 44/97 (45%), Positives = 65/97 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL +++ +E GLSR +S + V ++ I D+ VRGE +KISSF TF V+ K R+ Sbjct: 5 TLTRMDLAEAVFREVGLSRHESAQLVESVLGHISDALVRGEQVKISSFGTFSVRDKNERI 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +EV I PRRV+ F+ S ++K R+ R + Sbjct: 65 GRNPKTGEEVPITPRRVLSFRPSHLMKDRVAAGNRRK 101 >gi|296102760|ref|YP_003612906.1| integration host factor subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057219|gb|ADF61957.1| integration host factor subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 99 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 53/95 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|260779568|ref|ZP_05888458.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC BAA-450] gi|260604377|gb|EEX30681.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC BAA-450] Length = 90 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F + LK + Sbjct: 61 RNPKTGDEIQIAAANVPAFVSGKALKDAVK 90 >gi|260768944|ref|ZP_05877878.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972] gi|260616974|gb|EEX42159.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972] gi|315180640|gb|ADT87554.1| DNA-binding protein HU-beta [Vibrio furnissii NCTC 11218] Length = 90 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ +S+ + R + + D+ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAANADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFAVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPAFKAGKALKDA 88 >gi|262044127|ref|ZP_06017202.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038526|gb|EEW39722.1| integration host factor subunit alpha [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 99 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|15964977|ref|NP_385330.1| integration host factor subunit alpha [Sinorhizobium meliloti 1021] gi|150396054|ref|YP_001326521.1| integration host factor subunit alpha [Sinorhizobium medicae WSM419] gi|307301048|ref|ZP_07580817.1| integration host factor, alpha subunit [Sinorhizobium meliloti BL225C] gi|307317782|ref|ZP_07597220.1| integration host factor, alpha subunit [Sinorhizobium meliloti AK83] gi|21362610|sp|Q92QT3|IHFA_RHIME RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918530|sp|A6U7Q6|IHFA_SINMW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|15074156|emb|CAC45803.1| Probable integration host factor alpha-subunit [Sinorhizobium meliloti 1021] gi|150027569|gb|ABR59686.1| integration host factor, alpha subunit [Sinorhizobium medicae WSM419] gi|306896544|gb|EFN27292.1| integration host factor, alpha subunit [Sinorhizobium meliloti AK83] gi|306904003|gb|EFN34589.1| integration host factor, alpha subunit [Sinorhizobium meliloti BL225C] Length = 112 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 54/111 (48%), Positives = 82/111 (73%), Gaps = 1/111 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE++K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 R+GRN +T +EV I PRRV+ FKAS++LK+R++ RK +K ++P+G Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKQRVLKAHLSRK-SKLKPSNPAG 112 >gi|229193754|ref|ZP_04320694.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228589726|gb|EEK47605.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] Length = 93 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ + + I ++ GE ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|313905493|ref|ZP_07838857.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] gi|313469677|gb|EFR65015.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] Length = 90 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +IS++ L++K S + + + D+ +G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAISEQTDLTKKQSEEALKAFVDVVADALKKGDKVQLVGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+ ++I + FKA LK I Sbjct: 61 RNPRTNETIEIAASKTPKFKAGKALKDLIK 90 >gi|254785728|ref|YP_003073157.1| DNA-binding protein HU-beta [Teredinibacter turnerae T7901] gi|239918950|gb|ACR13101.2| DNA-binding protein HU-beta [Teredinibacter turnerae T7901] Length = 90 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV++I+ +S+ + R + + I ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELVEAIAASADISKAAAGRALDAVTESIANALKEGDQVALVGFGTFLVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I ++ FKA LK + Sbjct: 61 RNPQTGDPIEIAAAKIPSFKAGKALKDAVN 90 >gi|225873248|ref|YP_002754707.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] gi|225792876|gb|ACO32966.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] Length = 107 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 60/107 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ ++K L+R+D V T+F+ + + G+ I+I F +F V+Q+ RVG Sbjct: 1 MTKADLVEELTKSGELTRRDGEVIVDTIFDSVIAALKSGDKIEIRGFGSFRVRQRNPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN +T +V + ++V FK S L+ + + + +D S S Sbjct: 61 RNPKTGAKVDVPAKKVPYFKPSKELRDLVNPHGDNGEDHGEDEDSGS 107 >gi|124494290|gb|ABN13185.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. subtilis str. 168] gi|124494310|gb|ABN13204.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494330|gb|ABN13223.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494350|gb|ABN13242.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. spizizenii str. W23] gi|124494370|gb|ABN13261.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494390|gb|ABN13280.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494410|gb|ABN13299.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494429|gb|ABN13317.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494450|gb|ABN13337.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp. subtilis str. SMY] gi|124494470|gb|ABN13356.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494490|gb|ABN13375.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494510|gb|ABN13394.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] gi|124494530|gb|ABN13413.1| non-specific DNA-binding protein HBsu [Bacillus subtilis] Length = 86 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 51/85 (60%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 + ++++ LS+KD+T+ V ++F+ I D+ G+ I++ F F V+++ +R GRN QT Sbjct: 1 INAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRNPQTG 60 Query: 71 QEVKIDPRRVVVFKASSILKKRIMD 95 +E++I +V FK LK + Sbjct: 61 EEIEIPASKVPAFKPGKALKDAVAG 85 >gi|88860448|ref|ZP_01135086.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] gi|88817646|gb|EAR27463.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] Length = 90 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + + + G+++ + F +F V+++ +R G Sbjct: 1 MNKSQLIDEIAAGADISKAAAGRALDSFIDAVTTALKDGDSVALVGFGSFSVRERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I + FKA LK + Sbjct: 61 RNPQTGATIEIAAANIPSFKAGKALKDAVN 90 >gi|114332285|ref|YP_748507.1| integration host factor subunit alpha [Nitrosomonas eutropha C91] gi|122313054|sp|Q0ADP0|IHFA_NITEC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114309299|gb|ABI60542.1| integration host factor, alpha subunit [Nitrosomonas eutropha C91] Length = 102 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + GL+++++ V + E+ + G+ +K+S F F ++ K R Sbjct: 2 ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRTALQNGDGVKLSGFGNFQLRTKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F AS LK + + RG Sbjct: 62 GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRGEP 99 >gi|323498279|ref|ZP_08103281.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326] gi|323316707|gb|EGA69716.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326] Length = 90 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 48/88 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I++ LS+ + R + L + ++ G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEKIAENADLSKASAGRALDALIEAVGETLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88 >gi|163735834|ref|ZP_02143263.1| integration host factor, alpha subunit [Roseobacter litoralis Och 149] gi|161390920|gb|EDQ15260.1| integration host factor, alpha subunit [Roseobacter litoralis Och 149] Length = 100 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ V GE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVSGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I+PRRV+ F+ S ++K R+ D + Sbjct: 64 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVADGNK 99 >gi|88706038|ref|ZP_01103746.1| Integration host factor alpha-subunit [Congregibacter litoralis KT71] gi|254515023|ref|ZP_05127084.1| integration host factor, alpha subunit [gamma proteobacterium NOR5-3] gi|88699752|gb|EAQ96863.1| Integration host factor alpha-subunit [Congregibacter litoralis KT71] gi|219677266|gb|EED33631.1| integration host factor, alpha subunit [gamma proteobacterium NOR5-3] Length = 101 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+S++ + + +E GL+++++ V F EI E +K+S F F ++ K Sbjct: 1 MS-ALTKSEMAERLFEELGLNKREAKEIVELFFEEIRVCLENNEQVKLSGFGNFDLRDKN 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN +T +E+ I RRVV F+ LK R+ + Sbjct: 60 QRPGRNPKTGEEIPISARRVVTFRPGQKLKARVEE 94 >gi|294141765|ref|YP_003557743.1| HU family DNA-binding protein [Shewanella violacea DSS12] gi|293328234|dbj|BAJ02965.1| DNA-binding protein, HU family [Shewanella violacea DSS12] Length = 90 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI + FKA LK + Sbjct: 61 RNPQTGAEIKIAAANIPAFKAGKALKDAVN 90 >gi|255282032|ref|ZP_05346587.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469] gi|255267351|gb|EET60556.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469] Length = 91 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+KE LS+KD+ V + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAIAKETELSKKDAELAVKAFTDVVTAELKKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + FKA LK + + Sbjct: 61 RNPQTGESMSIQASKTPKFKAGKALKDAVNN 91 >gi|37527726|ref|NP_931071.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787162|emb|CAE16238.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 91 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + + G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+KI +V F+ LK + Sbjct: 61 RNPQTGKELKIAAAKVPAFRPGKGLKDAVNG 91 >gi|83311454|ref|YP_421718.1| integration host factor subunit alpha [Magnetospirillum magneticum AMB-1] gi|123740482|sp|Q2W4R6|IHFA_MAGMM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|82946295|dbj|BAE51159.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 106 Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats. Identities = 46/99 (46%), Positives = 70/99 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+ L +++ +E GLSR +S + + +EI + +G+A+KISSF +F V+ KG R Sbjct: 4 KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +GRN +T +EV I PRRV+VF+ S +LKK+I D M ++ Sbjct: 64 IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGMAAKR 102 >gi|238855192|ref|ZP_04645511.1| DNA-binding protein HU [Lactobacillus jensenii 269-3] gi|260664555|ref|ZP_05865407.1| integration host factor, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|282932514|ref|ZP_06337939.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] gi|313471979|ref|ZP_07812471.1| DNA-binding protein HU [Lactobacillus jensenii 1153] gi|238832084|gb|EEQ24402.1| DNA-binding protein HU [Lactobacillus jensenii 269-3] gi|239529089|gb|EEQ68090.1| DNA-binding protein HU [Lactobacillus jensenii 1153] gi|260561620|gb|EEX27592.1| integration host factor, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|281303463|gb|EFA95640.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] Length = 91 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++KD V +F I + +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVAEVAAKTKLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGVEIEIPASKVPAFKPGKALKDAVK 91 >gi|161503552|ref|YP_001570664.1| integration host factor subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189044705|sp|A9MFB7|IHFA_SALAR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|160864899|gb|ABX21522.1| hypothetical protein SARI_01630 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 99 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 54/98 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAAPKEE 99 >gi|256851012|ref|ZP_05556401.1| integration host factor, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260661224|ref|ZP_05862138.1| integration host factor, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|282932035|ref|ZP_06337493.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] gi|256616074|gb|EEU21262.1| integration host factor, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260548161|gb|EEX24137.1| integration host factor, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|281303802|gb|EFA95946.1| DNA-binding protein HU [Lactobacillus jensenii 208-1] Length = 91 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++KD V +F I +GE +++ F TF V+ + +R GR Sbjct: 3 NKAELVAEVAAKTKLTKKDVAAAVDAIFASIQQDLAKGEKVQLIGFGTFEVRNRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 63 NPQTGVEIEIPASKVPAFKPGKALKDAVK 91 >gi|188533971|ref|YP_001907768.1| integration host factor subunit alpha [Erwinia tasmaniensis Et1/99] gi|292488135|ref|YP_003531012.1| integration host factor subunit alpha [Erwinia amylovora CFBP1430] gi|292899346|ref|YP_003538715.1| integration host factor alpha-subunit [Erwinia amylovora ATCC 49946] gi|300716465|ref|YP_003741268.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia billingiae Eb661] gi|226709728|sp|B2VEL2|IHFA_ERWT9 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|188029013|emb|CAO96881.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia tasmaniensis Et1/99] gi|291199194|emb|CBJ46308.1| integration host factor alpha-subunit [Erwinia amylovora ATCC 49946] gi|291553559|emb|CBA20604.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia amylovora CFBP1430] gi|299062301|emb|CAX59418.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia billingiae Eb661] gi|312172267|emb|CBX80524.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia amylovora ATCC BAA-2158] Length = 99 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|319763191|ref|YP_004127128.1| integration host factor, alpha subunit [Alicycliphilus denitrificans BC] gi|330825385|ref|YP_004388688.1| integration host factor subunit alpha [Alicycliphilus denitrificans K601] gi|317117752|gb|ADV00241.1| integration host factor, alpha subunit [Alicycliphilus denitrificans BC] gi|329310757|gb|AEB85172.1| integration host factor, alpha subunit [Alicycliphilus denitrificans K601] Length = 117 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 56/97 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + + GL++++S V F+ I S V G+ +K+S F F ++ K Sbjct: 19 SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T + + I+ RRVV F ASS LK++I + Sbjct: 79 RPGRNPRTGETIPIEARRVVTFHASSKLKEQIQGRSK 115 >gi|260433446|ref|ZP_05787417.1| integration host factor, alpha subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417274|gb|EEX10533.1| integration host factor, alpha subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 100 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 45/96 (46%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESILNHMSDALVRGEQVKISSFGTFSVRDKSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +GRN +T +EV I PRRV+ F+ S ++K R+ R Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAAGNR 99 >gi|258542774|ref|YP_003188207.1| integration host factor DNA-binding subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|329114627|ref|ZP_08243386.1| Integration host factor subunit alpha [Acetobacter pomorum DM001] gi|256633852|dbj|BAH99827.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636911|dbj|BAI02880.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639964|dbj|BAI05926.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643020|dbj|BAI08975.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646075|dbj|BAI12023.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649128|dbj|BAI15069.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652115|dbj|BAI18049.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655172|dbj|BAI21099.1| integration host factor DNA-binding alpha subunit [Acetobacter pasteurianus IFO 3283-12] gi|326696107|gb|EGE47789.1| Integration host factor subunit alpha [Acetobacter pomorum DM001] Length = 106 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 40/103 (38%), Positives = 66/103 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+ L++ I ++ GLSRK+S+ + + + D+ RGE++KIS F TF V++KG R Sbjct: 2 ETVTRASLIEQIYQQVGLSRKESSVLLEDVLETVMDALERGESVKISGFGTFSVRKKGQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T +EV I PR V+VF+ S +L+ + + + D Sbjct: 62 SGRNPKTGEEVPILPRSVLVFRPSQLLRAEVNHETLDAEAEHD 104 >gi|238783379|ref|ZP_04627402.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC 43970] gi|238791696|ref|ZP_04635333.1| Integration host factor subunit alpha [Yersinia intermedia ATCC 29909] gi|238797375|ref|ZP_04640875.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC 43969] gi|238715624|gb|EEQ07613.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC 43970] gi|238718806|gb|EEQ10622.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC 43969] gi|238728800|gb|EEQ20317.1| Integration host factor subunit alpha [Yersinia intermedia ATCC 29909] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEGATP 96 >gi|109898808|ref|YP_662063.1| integration host factor, alpha subunit [Pseudoalteromonas atlantica T6c] gi|332306904|ref|YP_004434755.1| integration host factor, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|122971862|sp|Q15SX9|IHFA_PSEA6 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|109701089|gb|ABG41009.1| integration host factor, alpha subunit [Pseudoalteromonas atlantica T6c] gi|332174233|gb|AEE23487.1| integration host factor, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G++++D+ V F E+ ++ GE +K+S F F ++QK R Sbjct: 2 ALTKAEMAEHLFEKLGMNKRDAKDLVEAFFEEVREALESGEQVKLSGFGNFDLRQKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPIKARRVVTFRPGQKLKSRVEN 93 >gi|323143441|ref|ZP_08078124.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] gi|322416726|gb|EFY07377.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] Length = 91 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV SI+K+ GLS KDS + + D+ +G++I + F TF V+ + +RVG Sbjct: 1 MNKSQLVSSIAKQSGLSLKDSNAALNAFLETVKDTLAKGDSISLVGFGTFLVRDRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +EVKI +V FKA K ++ Sbjct: 61 RNPRTKEEVKIPAVKVPAFKAGKPFKDKVNG 91 >gi|242239477|ref|YP_002987658.1| integration host factor subunit alpha [Dickeya dadantii Ech703] gi|242131534|gb|ACS85836.1| integration host factor, alpha subunit [Dickeya dadantii Ech703] Length = 99 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|27365694|ref|NP_761222.1| integration host factor subunit alpha [Vibrio vulnificus CMCP6] gi|37680150|ref|NP_934759.1| integration host factor subunit alpha [Vibrio vulnificus YJ016] gi|320156101|ref|YP_004188480.1| integration host factor subunit alpha [Vibrio vulnificus MO6-24/O] gi|33301286|sp|Q8DA35|IHFA_VIBVU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|61213547|sp|Q7MK44|IHFA_VIBVY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|27361843|gb|AAO10749.1| integration host factor, alpha subunit [Vibrio vulnificus CMCP6] gi|37198896|dbj|BAC94730.1| integration host factor, alpha subunit [Vibrio vulnificus YJ016] gi|319931413|gb|ADV86277.1| integration host factor alpha subunit [Vibrio vulnificus MO6-24/O] Length = 95 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|251789564|ref|YP_003004285.1| integration host factor subunit alpha [Dickeya zeae Ech1591] gi|271500486|ref|YP_003333511.1| integration host factor subunit alpha [Dickeya dadantii Ech586] gi|307131171|ref|YP_003883187.1| integration host factor (IHF), DNA-binding protein, subunit alpha [Dickeya dadantii 3937] gi|585306|sp|P37982|IHFA_DICD3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|399668|emb|CAA52768.1| integration host factor alpha subunit [Erwinia chrysanthemi] gi|247538185|gb|ACT06806.1| integration host factor, alpha subunit [Dickeya zeae Ech1591] gi|270344041|gb|ACZ76806.1| integration host factor, alpha subunit [Dickeya dadantii Ech586] gi|306528700|gb|ADM98630.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Dickeya dadantii 3937] gi|1093152|prf||2103145A integration host factor Length = 99 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|119476199|ref|ZP_01616551.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143] gi|119450826|gb|EAW32060.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143] Length = 90 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ L + + R + + + + G+ + + F TF VK + +R G Sbjct: 1 MNKSELIEAIAASADLPKAAAGRALDAMVETVTGALKDGDQVVLVGFGTFAVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIKAAKVPGFKAGKALKDAVN 90 >gi|114562885|ref|YP_750398.1| integration host factor, alpha subunit [Shewanella frigidimarina NCIMB 400] gi|122299977|sp|Q083K5|IHFA_SHEFN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114334178|gb|ABI71560.1| integration host factor, alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 99 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI ++ GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ G+K Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEAANSGKK 99 >gi|304397622|ref|ZP_07379499.1| integration host factor, alpha subunit [Pantoea sp. aB] gi|308186652|ref|YP_003930783.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|304354794|gb|EFM19164.1| integration host factor, alpha subunit [Pantoea sp. aB] gi|308057162|gb|ADO09334.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] Length = 100 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|89094709|ref|ZP_01167645.1| integration host factor, alpha subunit [Oceanospirillum sp. MED92] gi|89081055|gb|EAR60291.1| integration host factor, alpha subunit [Oceanospirillum sp. MED92] Length = 101 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS ++T++D+ + +++E GL+++++ V + F+EI E +K+S F F ++ K Sbjct: 1 MS-SLTKADMAERLNEELGLNKREAKEMVESFFDEIRACLAANEQVKLSGFGNFDLRDKR 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +EV I RRVV F+ LK R+ Sbjct: 60 QRPGRNPKTGEEVPISARRVVTFRPGQKLKDRVE 93 >gi|326386988|ref|ZP_08208598.1| integration host factor, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208169|gb|EGD58976.1| integration host factor, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 61/89 (68%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR+DL +SI++ GLSR +S V + +++CD+ GE +KIS F TF ++ K R+G Sbjct: 1 MTRADLAESINRRVGLSRAESLEMVEAILSQMCDALAEGENVKISGFGTFLLRDKAERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T EV I PRRV+ F+AS +LK RI Sbjct: 61 RNPKTGVEVPITPRRVLTFRASQMLKDRI 89 >gi|218710171|ref|YP_002417792.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] gi|218323190|emb|CAV19367.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] Length = 97 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+ ++ LV+SI++ +S+ + R + + + G+ + + F TF V+ + + Sbjct: 5 GKTVNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAA 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R GRN +T +E++I +V FKA LK Sbjct: 65 RTGRNPKTGEEIQIAEAKVPGFKAGKALKDA 95 >gi|22125804|ref|NP_669227.1| integration host factor subunit alpha [Yersinia pestis KIM 10] gi|45442004|ref|NP_993543.1| integration host factor subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|51596659|ref|YP_070850.1| integration host factor subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|108807766|ref|YP_651682.1| integration host factor subunit alpha [Yersinia pestis Antiqua] gi|108812043|ref|YP_647810.1| integration host factor subunit alpha [Yersinia pestis Nepal516] gi|123442195|ref|YP_001006176.1| integration host factor subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145598026|ref|YP_001162102.1| integration host factor subunit alpha [Yersinia pestis Pestoides F] gi|149365665|ref|ZP_01887700.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125] gi|153948307|ref|YP_001400695.1| integration host factor subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|162420689|ref|YP_001607026.1| integration host factor subunit alpha [Yersinia pestis Angola] gi|165927499|ref|ZP_02223331.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939484|ref|ZP_02228030.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011822|ref|ZP_02232720.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211124|ref|ZP_02237159.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400951|ref|ZP_02306457.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422126|ref|ZP_02313879.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424960|ref|ZP_02316713.1| integration host factor, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024065|ref|YP_001720570.1| integration host factor subunit alpha [Yersinia pseudotuberculosis YPIII] gi|186895716|ref|YP_001872828.1| integration host factor subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|218929515|ref|YP_002347390.1| integration host factor subunit alpha [Yersinia pestis CO92] gi|229837952|ref|ZP_04458111.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895112|ref|ZP_04510288.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Pestoides A] gi|229898513|ref|ZP_04513658.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229902354|ref|ZP_04517474.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Nepal516] gi|238749476|ref|ZP_04610981.1| Integration host factor subunit alpha [Yersinia rohdei ATCC 43380] gi|238765301|ref|ZP_04626228.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC 33638] gi|238787094|ref|ZP_04630894.1| Integration host factor subunit alpha [Yersinia frederiksenii ATCC 33641] gi|270490464|ref|ZP_06207538.1| integration host factor, alpha subunit [Yersinia pestis KIM D27] gi|332161617|ref|YP_004298194.1| integration host factor subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|21362607|sp|Q8ZDX2|IHFA_YERPE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|55977891|sp|Q9X9F6|IHFA_YERPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|122979583|sp|Q1C735|IHFA_YERPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123373196|sp|Q1CIH0|IHFA_YERPN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918533|sp|A1JMM4|IHFA_YERE8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918534|sp|A7FHG7|IHFA_YERP3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918535|sp|A4TIL7|IHFA_YERPP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709763|sp|B2K662|IHFA_YERPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709764|sp|A9R0A2|IHFA_YERPG RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709765|sp|B1JJ23|IHFA_YERPY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|21958730|gb|AAM85478.1|AE013793_14 integration host factor (IHF), alpha subunit [Yersinia pestis KIM 10] gi|45436867|gb|AAS62420.1| integration host factor alpha-subunit [Yersinia pestis biovar Microtus str. 91001] gi|51589941|emb|CAH21573.1| integration host factor alpha-subunit [Yersinia pseudotuberculosis IP 32953] gi|108775691|gb|ABG18210.1| integration host factor alpha-subunit [Yersinia pestis Nepal516] gi|108779679|gb|ABG13737.1| integration host factor alpha-subunit [Yersinia pestis Antiqua] gi|115348126|emb|CAL21054.1| integration host factor alpha-subunit [Yersinia pestis CO92] gi|122089156|emb|CAL11998.1| integration host factor alpha-subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|145209722|gb|ABP39129.1| integration host factor alpha-subunit [Yersinia pestis Pestoides F] gi|149292078|gb|EDM42152.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125] gi|152959802|gb|ABS47263.1| integration host factor, alpha subunit [Yersinia pseudotuberculosis IP 31758] gi|162353504|gb|ABX87452.1| integration host factor, alpha subunit [Yersinia pestis Angola] gi|165912533|gb|EDR31164.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920554|gb|EDR37831.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989287|gb|EDR41588.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166208304|gb|EDR52784.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958938|gb|EDR55959.1| integration host factor, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049804|gb|EDR61212.1| integration host factor, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056147|gb|EDR65925.1| integration host factor, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750599|gb|ACA68117.1| integration host factor, alpha subunit [Yersinia pseudotuberculosis YPIII] gi|186698742|gb|ACC89371.1| integration host factor, alpha subunit [Yersinia pseudotuberculosis PB1/+] gi|229680689|gb|EEO76785.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Nepal516] gi|229688061|gb|EEO80132.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229694318|gb|EEO84365.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701874|gb|EEO89897.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis Pestoides A] gi|238696474|gb|EEP89264.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC 33638] gi|238712131|gb|EEQ04344.1| Integration host factor subunit alpha [Yersinia rohdei ATCC 43380] gi|238724882|gb|EEQ16522.1| Integration host factor subunit alpha [Yersinia frederiksenii ATCC 33641] gi|270338968|gb|EFA49745.1| integration host factor, alpha subunit [Yersinia pestis KIM D27] gi|318605892|emb|CBY27390.1| integration host factor alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|320015082|gb|ADV98653.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Yersinia pestis biovar Medievalis str. Harbin 35] gi|325665847|gb|ADZ42491.1| integration host factor subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVESATP 96 >gi|328543684|ref|YP_004303793.1| Histone-like DNA-binding protein [polymorphum gilvum SL003B-26A1] gi|326413428|gb|ADZ70491.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1] Length = 91 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F+ + + G+ ++I F F V ++ + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDATFDAVTATLKAGDEVRIIGFGNFSVSERAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + FKA LK + Sbjct: 61 RNPRTGETIKIPASKTPKFKAGKGLKDAVNG 91 >gi|260580507|ref|ZP_05848335.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] gi|260092849|gb|EEW76784.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] Length = 112 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R Sbjct: 21 KFMNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAAR 80 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT E++I +V F + LK I Sbjct: 81 TGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 112 >gi|261821457|ref|YP_003259563.1| integration host factor subunit alpha [Pectobacterium wasabiae WPP163] gi|261605470|gb|ACX87956.1| integration host factor, alpha subunit [Pectobacterium wasabiae WPP163] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|190573025|ref|YP_001970870.1| putative DNA-binding protein HU-beta [Stenotrophomonas maltophilia K279a] gi|190010947|emb|CAQ44556.1| putative DNA-binding protein HU-beta [Stenotrophomonas maltophilia K279a] Length = 90 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ L++ +S+R V + I + G+A+ + F TF V+ + +R G Sbjct: 1 MNKTELIDAVAEAADLTKAESSRAVDAVVAAITKALKDGDAVTLVGFGTFQVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAVN 90 >gi|85059402|ref|YP_455104.1| integration host factor subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|123725404|sp|Q2NT26|IHFA_SODGM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|84779922|dbj|BAE74699.1| integration host factor alpha subunit [Sodalis glossinidius str. 'morsitans'] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKEIVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|291326896|ref|ZP_06126254.2| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131] gi|291312425|gb|EFE52878.1| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131] Length = 96 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + +S+ + R V + S +G+ + + F TF V+++ +R G Sbjct: 6 VNKAQLIDQIASDANISKAAAGRVVDAFVATVTGSLSKGDDVALVGFGTFSVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V F+ LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAVN 95 >gi|153871697|ref|ZP_02000804.1| DNA-binding protein HU [Beggiatoa sp. PS] gi|152071839|gb|EDN69198.1| DNA-binding protein HU [Beggiatoa sp. PS] Length = 90 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ +++ + + V + I D+ +++ + F TF V+++ +RVG Sbjct: 1 MNKSELIQAVAESAEITKGQAGKAVDAVIESIKDALAEADSVTLIGFGTFTVRERAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I V VFK LK + Sbjct: 61 RNPRTGERLDIKAANVPVFKPGKALKDAVN 90 >gi|1706310|sp|P52681|DBHB_SERMA RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|802008|gb|AAA65988.1| HU beta [Serratia marcescens] gi|1586263|prf||2203354B heterodimeric HU protein Length = 90 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F +F V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKAGDDVALVGFGSFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI R+V F+A LK + Sbjct: 61 RNPQTGKEIKIAARKVPAFRAGKALKDAVN 90 >gi|117924608|ref|YP_865225.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1] gi|117926119|ref|YP_866736.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1] gi|117608364|gb|ABK43819.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1] gi|117609875|gb|ABK45330.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1] Length = 96 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ GLS+K+S V ++F I GE +KIS F F ++ K R Sbjct: 2 TMTKADIVQTVYHRLGLSKKESADVVESVFELIRSQLESGEPVKISGFGGFSIRDKKPRQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T ++V+I RRVV FKAS IL R+ Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRVNKG 94 >gi|89074399|ref|ZP_01160881.1| integration host factor alpha subunit [Photobacterium sp. SKA34] gi|90579644|ref|ZP_01235453.1| integration host factor alpha subunit [Vibrio angustum S14] gi|89049886|gb|EAR55427.1| integration host factor alpha subunit [Photobacterium sp. SKA34] gi|90439218|gb|EAS64400.1| integration host factor alpha subunit [Vibrio angustum S14] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFENVGLSKRDAKDTVEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVE 92 >gi|317491936|ref|ZP_07950370.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|322833533|ref|YP_004213560.1| integration host factor, subunit alpha [Rahnella sp. Y9602] gi|316920057|gb|EFV41382.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|321168734|gb|ADW74433.1| integration host factor, alpha subunit [Rahnella sp. Y9602] Length = 98 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVEIFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|57339942|gb|AAW49958.1| hypothetical protein FTT0627 [synthetic construct] Length = 125 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 27 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FKAS LK + Sbjct: 87 RNPKTGETIKIPASKVPSFKASKGLKDAVK 116 >gi|323492062|ref|ZP_08097224.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323313623|gb|EGA66725.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 90 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTDALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK + Sbjct: 61 RNPKTGAEIQIAAANVPAFVAGKALKDSVK 90 >gi|307942066|ref|ZP_07657417.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4] gi|307774352|gb|EFO33562.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4] Length = 91 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F + ++ G+ ++I F F V + + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDATFEAVTETLKAGDEVRIIGFGNFSVSARAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90 >gi|114319923|ref|YP_741606.1| integration host factor subunit alpha [Alkalilimnicola ehrlichii MLHE-1] gi|122312214|sp|Q0AAM1|IHFA_ALHEH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114226317|gb|ABI56116.1| integration host factor, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 101 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 55/100 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V + F EI + G +K+S F F ++ K R Sbjct: 2 ALTKADMAERLFEEVGLNKREAKELVESFFEEIRQALEDGVPVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T +E+ I RRVV F+ LK R+ K + Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKSRVEAYAGNVKQS 101 >gi|197335248|ref|YP_002155560.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] gi|197316738|gb|ACH66185.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] Length = 90 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I++ +S+ + R + L + ++ G+ + + F +F V+++ +R G Sbjct: 1 MNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T + ++I +V FKA LK Sbjct: 61 RNPKTGEAIEISAAKVPAFKAGKALKDA 88 >gi|119472475|ref|ZP_01614574.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Alteromonadales bacterium TW-7] gi|332534256|ref|ZP_08410101.1| integration host factor alpha subunit [Pseudoalteromonas haloplanktis ANT/505] gi|119444912|gb|EAW26211.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Alteromonadales bacterium TW-7] gi|332036336|gb|EGI72807.1| integration host factor alpha subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 99 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + ++ G+++KD+ V F EI + +GE +K+S F F ++ K R Sbjct: 2 ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQVKLSGFGNFDLRDKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92 >gi|83647266|ref|YP_435701.1| integration host factor subunit alpha [Hahella chejuensis KCTC 2396] gi|123753568|sp|Q2SDJ8|IHFA_HAHCH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|83635309|gb|ABC31276.1| integration host factor, alpha subunit [Hahella chejuensis KCTC 2396] Length = 100 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F+E+ D+ E +K+S F F ++ K R Sbjct: 3 ALTKADMAERLYQEVGLNKREAKEMVEAFFDEVRDALSHNEQVKLSGFGNFDLRDKKQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK ++ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKAKVE 93 >gi|298291651|ref|YP_003693590.1| integration host factor, subunit alpha [Starkeya novella DSM 506] gi|296928162|gb|ADH88971.1| integration host factor, alpha subunit [Starkeya novella DSM 506] Length = 101 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 48/97 (49%), Positives = 69/97 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TITR+DL +++ + GLSR +S V T+ +EI D RGE +K+SSF +F V+QKG Sbjct: 3 GRTITRADLCEAVYQRVGLSRTESAALVETVLSEIADCVARGETVKLSSFGSFVVRQKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+GRN +T +EV I PRRV+VFK S+ILK++I + Sbjct: 63 RIGRNPKTGEEVPIAPRRVMVFKPSNILKQQINGETP 99 >gi|50121344|ref|YP_050511.1| integration host factor subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|227111539|ref|ZP_03825195.1| integration host factor subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327039|ref|ZP_03831063.1| integration host factor subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688281|ref|YP_003017471.1| integration host factor, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|81693249|sp|Q6D4H4|IHFA_ERWCT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|259491532|sp|C6DFZ2|IHFA_PECCP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49611870|emb|CAG75319.1| integration host factor alpha-subunit [Pectobacterium atrosepticum SCRI1043] gi|251754859|gb|ACT12935.1| integration host factor, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 98 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|30248955|ref|NP_841025.1| integration host factor subunit alpha [Nitrosomonas europaea ATCC 19718] gi|81722208|sp|Q82VV7|IHFA_NITEU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|30138572|emb|CAD84863.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] Length = 102 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + GL+++++ V + E+ + G+ +K+S F F ++ K R Sbjct: 2 ALTKAELTDLLFENIGLNKREAKEIVECFYEEMRAALQNGDGVKLSGFGNFQLRTKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +E+ I RRVV F AS LK + + RG Sbjct: 62 GRNPKTGEEIPISARRVVTFHASQKLKSMVEANYRGE 98 >gi|127513433|ref|YP_001094630.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] gi|126638728|gb|ABO24371.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFISAVTDGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90 >gi|22124937|ref|NP_668360.1| transcriptional regulator HU subunit beta [Yersinia pestis KIM 10] gi|45440626|ref|NP_992165.1| transcriptional regulator HU subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51595312|ref|YP_069503.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108808640|ref|YP_652556.1| transcriptional regulator HU subunit beta [Yersinia pestis Antiqua] gi|108811101|ref|YP_646868.1| transcriptional regulator HU subunit beta [Yersinia pestis Nepal516] gi|145600049|ref|YP_001164125.1| transcriptional regulator HU subunit beta [Yersinia pestis Pestoides F] gi|149365000|ref|ZP_01887035.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125] gi|153946890|ref|YP_001402049.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis IP 31758] gi|162421829|ref|YP_001607417.1| transcriptional regulator HU subunit beta [Yersinia pestis Angola] gi|165926604|ref|ZP_02222436.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. F1991016] gi|165935858|ref|ZP_02224428.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|166011019|ref|ZP_02231917.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. E1979001] gi|166212951|ref|ZP_02238986.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. B42003004] gi|167398669|ref|ZP_02304193.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421618|ref|ZP_02313371.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423381|ref|ZP_02315134.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025448|ref|YP_001721953.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894329|ref|YP_001871441.1| transcriptional regulator HU subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218930184|ref|YP_002348059.1| transcriptional regulator HU subunit beta [Yersinia pestis CO92] gi|229838758|ref|ZP_04458917.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896088|ref|ZP_04511258.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Pestoides A] gi|229899326|ref|ZP_04514469.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901330|ref|ZP_04516452.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Nepal516] gi|270489516|ref|ZP_06206590.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|21957776|gb|AAM84611.1|AE013706_6 DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pestis KIM 10] gi|45435483|gb|AAS61042.1| DNA-binding protein HU-beta [Yersinia pestis biovar Microtus str. 91001] gi|51588594|emb|CAH20202.1| DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pseudotuberculosis IP 32953] gi|108774749|gb|ABG17268.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis Nepal516] gi|108780553|gb|ABG14611.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis Antiqua] gi|115348795|emb|CAL21749.1| DNA-binding protein HU-beta [Yersinia pestis CO92] gi|145211745|gb|ABP41152.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis Pestoides F] gi|149291413|gb|EDM41487.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125] gi|152958385|gb|ABS45846.1| DNA-binding protein HU-beta [Yersinia pseudotuberculosis IP 31758] gi|162354644|gb|ABX88592.1| DNA-binding protein HU-beta [Yersinia pestis Angola] gi|165916003|gb|EDR34610.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|165921532|gb|EDR38729.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. F1991016] gi|165990019|gb|EDR42320.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. E1979001] gi|166205738|gb|EDR50218.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. B42003004] gi|166960537|gb|EDR56558.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051173|gb|EDR62581.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057551|gb|EDR67297.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751982|gb|ACA69500.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis YPIII] gi|186697355|gb|ACC87984.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis PB1/+] gi|229681259|gb|EEO77353.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Nepal516] gi|229687728|gb|EEO79801.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695124|gb|EEO85171.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701011|gb|EEO89040.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis Pestoides A] gi|270338020|gb|EFA48797.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|320016340|gb|ADV99911.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIITSVTESLKEGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90 >gi|295424943|ref|ZP_06817655.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] gi|295065382|gb|EFG56278.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664] Length = 94 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +++LVK I+++ + +KD+ + ++ + I D V+G +++ F TF V+ + +R Sbjct: 3 SVNKAELVKEIAEKTEMKKKDAEAVLESVISTIQDELVKGNKVQLIGFGTFEVRHRAARK 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +E+ I +V FK LK+ + Sbjct: 63 GRNPQTGKEITIPATQVPAFKPGKALKESVNK 94 >gi|319405545|emb|CBI79164.1| DNA-binding protein [Bartonella sp. AR 15-3] Length = 92 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ G+S+ + V + ++ G +++ F +F V + + G Sbjct: 1 MNKSELVNSIAEKAGISKAQAGSSVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + + Sbjct: 61 RNPSTGAEITIPARSVPKFSAGKSLKEAVNN 91 >gi|163752059|ref|ZP_02159267.1| integration host factor, alpha subunit [Shewanella benthica KT99] gi|161328059|gb|EDP99229.1| integration host factor, alpha subunit [Shewanella benthica KT99] Length = 98 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ + R Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANSNR 98 >gi|295094507|emb|CBK83598.1| Bacterial nucleoid DNA-binding protein [Coprococcus sp. ART55/1] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KD+ + + + D +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEKTELSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FKA LK I Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSIN 90 >gi|254283717|ref|ZP_04958685.1| DNA-binding protein HU [gamma proteobacterium NOR51-B] gi|219679920|gb|EED36269.1| DNA-binding protein HU [gamma proteobacterium NOR51-B] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+++ LS+ + R + + + ++ + + + + F TF VK + +R G Sbjct: 1 MNKNDLIDAIAEDADLSKASAARALDATLSAVTEALSKQDTVSLVGFGTFSVKHRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + ++I FK LK + Sbjct: 61 RNPRSGETIQIKASNNPSFKPGKALKDAVN 90 >gi|149191095|ref|ZP_01869355.1| integration host factor subunit alpha [Vibrio shilonii AK1] gi|148835123|gb|EDL52100.1| integration host factor subunit alpha [Vibrio shilonii AK1] Length = 97 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI S GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKSLESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|157374683|ref|YP_001473283.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157317057|gb|ABV36155.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90 >gi|59711406|ref|YP_204182.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio fischeri ES114] gi|59479507|gb|AAW85294.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio fischeri ES114] Length = 98 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+ +S LV I++ +S+ + R + L + ++ G+ + + F +F V+++ + Sbjct: 6 GNTVNKSQLVDQIAESADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAA 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R GRN +T + ++I +V FKA LK Sbjct: 66 RTGRNPKTGEAIEISAAKVPAFKAGKALKDA 96 >gi|294139097|ref|YP_003555075.1| HU family DNA-binding protein [Shewanella violacea DSS12] gi|293325566|dbj|BAJ00297.1| DNA-binding protein, HU family [Shewanella violacea DSS12] Length = 91 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ ++ R + + I ++ G+ I I F +F + +R G Sbjct: 1 MNKTELVAKIAENADLTKAEAARALKSFEETITETLKSGDKISIVGFGSFETTNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT QE++I V FKA LK + Sbjct: 61 RNPQTGQEIQIPAATVPKFKAGKTLKDSVNQ 91 >gi|40062781|gb|AAR37675.1| DNA-binding protein HU [uncultured marine bacterium 439] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +I+ GL++ D+ R ++ I + G+ + I+ F +F V+ + +R G Sbjct: 1 MNKSDLVAAIADGSGLTKADAARALSATTGAISGALASGDKVSITGFGSFLVRSRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + I +V FKA +LK+ + Sbjct: 61 RNPQTGATIHISASKVPAFKAGKLLKESVN 90 >gi|21231892|ref|NP_637809.1| integration host factor subunit alpha [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21243319|ref|NP_642901.1| integration host factor subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|58582804|ref|YP_201820.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzae KACC10331] gi|66767980|ref|YP_242742.1| integration host factor subunit alpha [Xanthomonas campestris pv. campestris str. 8004] gi|78048345|ref|YP_364520.1| integration host factor subunit alpha [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84624678|ref|YP_452050.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711594|ref|ZP_02242801.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzicola BLS256] gi|188991106|ref|YP_001903116.1| integration host factor subunit alpha [Xanthomonas campestris pv. campestris str. B100] gi|289661755|ref|ZP_06483336.1| integration host factor subunit alpha [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668707|ref|ZP_06489782.1| integration host factor subunit alpha [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325919872|ref|ZP_08181862.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325927163|ref|ZP_08188426.1| integration host factor, alpha subunit [Xanthomonas perforans 91-118] gi|59799768|sp|P0A0T9|IHFA_XANCP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|59799769|sp|P0A0U0|IHFA_XANAC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|75508131|sp|Q5GXY6|IHFA_XANOR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81306043|sp|Q4UW51|IHFA_XANC8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123730273|sp|Q3BRU3|IHFA_XANC5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123739069|sp|Q2P101|IHFA_XANOM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709759|sp|B0RRH5|IHFA_XANCB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1172091|gb|AAA86369.1| GumA [Xanthomonas campestris] gi|21108861|gb|AAM37437.1| integration host factor alpha subunit [Xanthomonas axonopodis pv. citri str. 306] gi|21113616|gb|AAM41733.1| integration host factor alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58427398|gb|AAW76435.1| integration host factor alpha subunit [Xanthomonas oryzae pv. oryzae KACC10331] gi|66573312|gb|AAY48722.1| integration host factor alpha chain [Xanthomonas campestris pv. campestris str. 8004] gi|78036775|emb|CAJ24468.1| Integration host factor alpha subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84368618|dbj|BAE69776.1| Integration host factor alpha-subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|167732866|emb|CAP51060.1| integration host factor alpha chain [Xanthomonas campestris pv. campestris] gi|325542476|gb|EGD13955.1| integration host factor, alpha subunit [Xanthomonas perforans 91-118] gi|325549656|gb|EGD20520.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC 19865] Length = 99 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 55/91 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + D+ +G +K+S F F +++K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92 >gi|123443339|ref|YP_001007313.1| transcriptional regulator HU subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238759259|ref|ZP_04620426.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236] gi|238764857|ref|ZP_04625798.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638] gi|238783606|ref|ZP_04627627.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970] gi|238788011|ref|ZP_04631807.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641] gi|238791434|ref|ZP_04635072.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909] gi|238795539|ref|ZP_04639054.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969] gi|332160752|ref|YP_004297329.1| transcriptional regulator HU subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122090300|emb|CAL13166.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238696964|gb|EEP89740.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638] gi|238702546|gb|EEP95096.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236] gi|238715484|gb|EEQ07475.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970] gi|238720658|gb|EEQ12459.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969] gi|238723959|gb|EEQ15603.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641] gi|238729050|gb|EEQ20566.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909] gi|318604632|emb|CBY26130.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp. palearctica Y11] gi|325664982|gb|ADZ41626.1| transcriptional regulator HU subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859946|emb|CBX70275.1| DNA-binding protein HU-beta [Yersinia enterocolitica W22703] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90 >gi|241896283|ref|ZP_04783579.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313] gi|241870524|gb|EER74275.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313] Length = 91 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + +LV ++ GL++KD+T V +F I ++ +GE +++ F F V+ + +R GR Sbjct: 3 NKQELVTDVATATGLTKKDATAAVDAVFASIQETLAKGEKVQLIGFGNFEVRSRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I ++ FK LK I Sbjct: 63 NPQTGEEIEIAASKIPAFKPGKALKDAIK 91 >gi|221068236|ref|ZP_03544341.1| integration host factor, beta subunit [Comamonas testosteroni KF-1] gi|220713259|gb|EED68627.1| integration host factor, beta subunit [Comamonas testosteroni KF-1] Length = 107 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ +FG L+++D+ + V T+ + + D+ VRG I+I F +F + + R+ Sbjct: 1 MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN ++ + V++ +RV FK L++ + + Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAVDN 92 >gi|163793185|ref|ZP_02187161.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199] gi|159181831|gb|EDP66343.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ GLS+ DS + V +F+EI +G +++ F TF V + + G Sbjct: 1 MNKNELVAAVADSTGLSKADSGKAVDAVFDEITGQLKKGGDVRLVGFGTFSVASRAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++ I + FK LK + Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKGLKDSVN 90 >gi|24373363|ref|NP_717406.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] gi|113970827|ref|YP_734620.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|114048052|ref|YP_738602.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|120599411|ref|YP_963985.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|126173841|ref|YP_001049990.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|146292593|ref|YP_001183017.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|153000125|ref|YP_001365806.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160874747|ref|YP_001554063.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217973907|ref|YP_002358658.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304409714|ref|ZP_07391334.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|307304070|ref|ZP_07583823.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|24347626|gb|AAN54850.1|AE015624_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1] gi|113885511|gb|ABI39563.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|113889494|gb|ABI43545.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|120559504|gb|ABM25431.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|125997046|gb|ABN61121.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|145564283|gb|ABP75218.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|151364743|gb|ABS07743.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160860269|gb|ABX48803.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217499042|gb|ACK47235.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304352232|gb|EFM16630.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|306912968|gb|EFN43391.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|315266989|gb|ADT93842.1| histone family protein DNA-binding protein [Shewanella baltica OS678] gi|319425895|gb|ADV53969.1| histone family protein DNA-binding protein [Shewanella putrefaciens 200] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+++ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI ++ FKA LK + Sbjct: 61 RNPQTGEEIKIAAAKIPAFKAGKALKDAVN 90 >gi|228918447|ref|ZP_04081894.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841197|gb|EEM86392.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 93 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K I+++ L++KD+ L + I ++ GE ++I F TF V++K +R Sbjct: 2 QKMNKTELTKVIAEKAELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVREKSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|150395249|ref|YP_001325716.1| integration host factor subunit beta [Sinorhizobium medicae WSM419] gi|166975894|sp|A6U5F1|IHFB_SINMW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150026764|gb|ABR58881.1| integration host factor, beta subunit [Sinorhizobium medicae WSM419] Length = 103 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T V ++ + V FK L++R+ M G +DD Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNGNDNGEDD 103 >gi|85058652|ref|YP_454354.1| transcriptional regulator HU subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84779172|dbj|BAE73949.1| DNA-binding protein HU-beta [Sodalis glossinidius str. 'morsitans'] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S +G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIGSVTESLQQGDDVALVGFGTFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKGLKDAVN 90 >gi|209964552|ref|YP_002297467.1| DNA-binding protein HupA [Rhodospirillum centenum SW] gi|209958018|gb|ACI98654.1| DNA-binding protein HupA [Rhodospirillum centenum SW] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++++ GLS+ D+ + V +F+ I + +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLVAAVAEAAGLSKADANKAVDAVFDGITSALTKGDEVRLVGFGTFGVAERAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++ I + FKA LK + Sbjct: 61 RNPRTGEKISIPASKQPKFKAGKGLKDALN 90 >gi|315126233|ref|YP_004068236.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas sp. SM9913] gi|315014747|gb|ADT68085.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas sp. SM9913] Length = 98 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + ++ G+++KD+ V F EI + +GE IK+S F F ++ K R Sbjct: 2 ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92 >gi|269468801|gb|EEZ80405.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ GLS+ D+ R + I + +G+ ++I+ F +F V+ + +R G Sbjct: 1 MNKSELIDAIASTSGLSKADAGRALNATTGAITSAMAKGDGVQITGFGSFVVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I +V FKA LK+ + Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVN 90 >gi|268593005|ref|ZP_06127226.1| DNA-binding protein HU [Providencia rettgeri DSM 1131] gi|291311478|gb|EFE51931.1| DNA-binding protein HU [Providencia rettgeri DSM 1131] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++ + + + N I ++ +GE +++ F TF V + +R G Sbjct: 1 MNKTELVDAIAESADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I V F A LK+ + Sbjct: 61 RNPQTKAEIQIPATTVPAFSAGKALKEAVK 90 >gi|78485524|ref|YP_391449.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2] gi|78363810|gb|ABB41775.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E GL++ D+ + + + + + G+++ I F TF V ++ +R G Sbjct: 1 MNKTELVSAIAEEAGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTFKVGERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F A LK+ + Sbjct: 61 RNPQTGAEMQIPAAKVPKFSAGKALKEAVN 90 >gi|320156966|ref|YP_004189345.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O] gi|319932278|gb|ADV87142.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+SI+ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPSFKAGKALKDA 88 >gi|126729742|ref|ZP_01745555.1| integration host factor, alpha subunit [Sagittula stellata E-37] gi|126709861|gb|EBA08914.1| integration host factor, alpha subunit [Sagittula stellata E-37] Length = 100 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 43/96 (44%), Positives = 64/96 (66%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S V + + D+ V GE +KISSF TF V++K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAELVEAVLQHMSDALVEGEQVKISSFGTFSVREKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 64 VGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAAGNK 99 >gi|117617689|ref|YP_858134.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|145300512|ref|YP_001143353.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp. salmonicida A449] gi|7288222|gb|AAF45030.1|AF146598_1 putative DNA-binding protein HU [Aeromonas hydrophila] gi|42768703|gb|AAS45567.1| putative DNA-binding protein HU [Aeromonas hydrophila] gi|117559096|gb|ABK36044.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|142853284|gb|ABO91605.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp. salmonicida A449] Length = 98 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 46/93 (49%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ++ LV +I+ + LS+ + + + N I S G+A+++ F TF V + Sbjct: 6 GNVMNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAG 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT +E++I V F A LK + Sbjct: 66 RTGRNPQTGKEIQIAAANVPSFVAGKALKDAVK 98 >gi|189345750|ref|YP_001942279.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] gi|189339897|gb|ACD89300.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] Length = 91 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V N + S G+ + + F TF + R G Sbjct: 1 MSKAELVEKIASQAGLTKADAERAVNAFINVVTASLKDGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK + Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEV 89 >gi|329895713|ref|ZP_08271117.1| Integration host factor alpha subunit [gamma proteobacterium IMCC3088] gi|328922189|gb|EGG29544.1| Integration host factor alpha subunit [gamma proteobacterium IMCC3088] Length = 99 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SD+ + +E GL+++++ V F EI S E +K+S F F ++ KG R Sbjct: 3 ALTKSDMADMLFEELGLNKREAKEIVEMFFEEIRASLESNEQVKLSGFGNFELRDKGERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I PRRVV FK LK R+ Sbjct: 63 GRNPKTGEEIPISPRRVVTFKPGQKLKARVEK 94 >gi|253990888|ref|YP_003042244.1| DNA-binding protein HU-beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782338|emb|CAQ85502.1| DNA-binding protein HU-beta (NS1) (HU-1) [Photorhabdus asymbiotica] Length = 99 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + + G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDKIAADSNISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI +V F+ LK + + Sbjct: 66 RNPQTGKELKIAAAKVPAFRPGKSLKDAVNSNTN 99 >gi|149186802|ref|ZP_01865112.1| histone-like protein [Erythrobacter sp. SD-21] gi|148829469|gb|EDL47910.1| histone-like protein [Erythrobacter sp. SD-21] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ GLS+ D++ V +F+ I S +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLIGAVAEASGLSKSDASSAVEGVFDAITKSLSKGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMNIPASNQPKFKAGKGLKDAVN 90 >gi|322381185|ref|ZP_08055188.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154761|gb|EFX47032.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 90 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +I+ + GL++KD + E+ ++ G+ +++ F TF + + R G Sbjct: 1 MNKVDLINNIATKSGLTKKDVETVLNGFLGEVTEALSSGDKVQLIGFGTFETRVRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I +V FKA + LK+ + Sbjct: 61 RNPQTGKTITIPESKVPAFKAGNKLKEAVK 90 >gi|304391930|ref|ZP_07373872.1| integration host factor, alpha subunit [Ahrensia sp. R2A130] gi|303296159|gb|EFL90517.1| integration host factor, alpha subunit [Ahrensia sp. R2A130] Length = 106 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 1/105 (0%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR+DL +++ ++ GLSR +S++ V + EIC +AV GE+IK+SSF TF V+ K Sbjct: 1 MSEKTLTRADLAEAVYRKVGLSRLESSKLVEAVLEEICQAAVDGESIKLSSFGTFAVRSK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RVGRN +T +EV I RRV+VFK S+ILK R++DD + R K Sbjct: 61 NERVGRNPKTGEEVPITSRRVMVFKPSNILKSRVLDDHKARSDGK 105 >gi|294083695|ref|YP_003550452.1| histone family protein DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663267|gb|ADE38368.1| histone family protein DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 91 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GL++ D+ R V +F I + G ++I F TF V + + G Sbjct: 1 MNKNDLVSEVAESSGLTKADAGRAVDAVFESIQGALKSGGDVRIVGFGTFSVAHRAATTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA + LK+ + Sbjct: 61 RNPRTGETIQIKASKQPKFKAGAPLKEAVN 90 >gi|83311888|ref|YP_422152.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82946729|dbj|BAE51593.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 136 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ++DLV +++ GLS+ D+ + V +F I + G+ +++ F TF V + + Sbjct: 44 GPQVNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAA 103 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I + FKA LK I Sbjct: 104 SEGRNPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >gi|84687534|ref|ZP_01015410.1| Histone-like DNA-binding protein (IHF) [Maritimibacter alkaliphilus HTCC2654] gi|84664443|gb|EAQ10931.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium HTCC2654] Length = 110 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 47/99 (47%), Positives = 69/99 (69%), Gaps = 1/99 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S + V ++ + D+ V+GE +KISSF TF V+ K Sbjct: 11 MSEKTLTRMDLSEAVFREVGLSRNESAQLVESVLGHVSDALVKGETVKISSFGTFSVRDK 70 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN +T QEV I PRRV+ F+ S I+K+R+ + Sbjct: 71 AARVGRNPKTGQEVPISPRRVLTFRPSQIMKERVAAGNK 109 >gi|325917703|ref|ZP_08179894.1| integration host factor, alpha subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536097|gb|EGD07902.1| integration host factor, alpha subunit [Xanthomonas vesicatoria ATCC 35937] Length = 99 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + D+ +G +K+S F F ++ K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRPKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92 >gi|15641235|ref|NP_230867.1| integration host factor subunit alpha [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591560|ref|ZP_01678819.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80] gi|147673436|ref|YP_001216792.1| integration host factor subunit alpha [Vibrio cholerae O395] gi|153801913|ref|ZP_01956499.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3] gi|153831069|ref|ZP_01983736.1| integration host factor, alpha subunit [Vibrio cholerae 623-39] gi|227081394|ref|YP_002809945.1| integration host factor, alpha subunit [Vibrio cholerae M66-2] gi|229505185|ref|ZP_04394695.1| integration host factor alpha subunit [Vibrio cholerae BX 330286] gi|229511144|ref|ZP_04400623.1| integration host factor alpha subunit [Vibrio cholerae B33] gi|229515602|ref|ZP_04405061.1| integration host factor alpha subunit [Vibrio cholerae TMA 21] gi|229518262|ref|ZP_04407706.1| integration host factor alpha subunit [Vibrio cholerae RC9] gi|229521341|ref|ZP_04410760.1| integration host factor alpha subunit [Vibrio cholerae TM 11079-80] gi|229525828|ref|ZP_04415233.1| integration host factor alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229529691|ref|ZP_04419081.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)] gi|229608205|ref|YP_002878853.1| integration host factor subunit alpha [Vibrio cholerae MJ-1236] gi|254848347|ref|ZP_05237697.1| integration host factor subunit alpha [Vibrio cholerae MO10] gi|255745625|ref|ZP_05419573.1| integration host factor alpha subunit [Vibrio cholera CIRS 101] gi|262159099|ref|ZP_06030211.1| integration host factor alpha subunit [Vibrio cholerae INDRE 91/1] gi|262169457|ref|ZP_06037149.1| integration host factor alpha subunit [Vibrio cholerae RC27] gi|297578821|ref|ZP_06940749.1| integration host factor subunit alpha [Vibrio cholerae RC385] gi|298498680|ref|ZP_07008487.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757] gi|14194867|sp|Q9KSN4|IHFA_VIBCH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|172047387|sp|A5F1W7|IHFA_VIBC3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803523|sp|C3LLR8|IHFA_VIBCM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9655703|gb|AAF94381.1| integration host factor, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546587|gb|EAX56783.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80] gi|124122558|gb|EAY41301.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3] gi|146315319|gb|ABQ19858.1| integration host factor, alpha subunit [Vibrio cholerae O395] gi|148873450|gb|EDL71585.1| integration host factor, alpha subunit [Vibrio cholerae 623-39] gi|227009282|gb|ACP05494.1| integration host factor, alpha subunit [Vibrio cholerae M66-2] gi|227013139|gb|ACP09349.1| integration host factor, alpha subunit [Vibrio cholerae O395] gi|229333465|gb|EEN98951.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)] gi|229339409|gb|EEO04426.1| integration host factor alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229341439|gb|EEO06442.1| integration host factor alpha subunit [Vibrio cholerae TM 11079-80] gi|229344977|gb|EEO09951.1| integration host factor alpha subunit [Vibrio cholerae RC9] gi|229347371|gb|EEO12331.1| integration host factor alpha subunit [Vibrio cholerae TMA 21] gi|229351109|gb|EEO16050.1| integration host factor alpha subunit [Vibrio cholerae B33] gi|229357408|gb|EEO22325.1| integration host factor alpha subunit [Vibrio cholerae BX 330286] gi|229370860|gb|ACQ61283.1| integration host factor alpha subunit [Vibrio cholerae MJ-1236] gi|254844052|gb|EET22466.1| integration host factor subunit alpha [Vibrio cholerae MO10] gi|255736700|gb|EET92097.1| integration host factor alpha subunit [Vibrio cholera CIRS 101] gi|262022270|gb|EEY40979.1| integration host factor alpha subunit [Vibrio cholerae RC27] gi|262029284|gb|EEY47936.1| integration host factor alpha subunit [Vibrio cholerae INDRE 91/1] gi|297536415|gb|EFH75248.1| integration host factor subunit alpha [Vibrio cholerae RC385] gi|297543013|gb|EFH79063.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757] gi|327483918|gb|AEA78325.1| Integration host factor alpha subunit [Vibrio cholerae LMA3894-4] Length = 98 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|292492662|ref|YP_003528101.1| integration host factor subunit beta [Nitrosococcus halophilus Nc4] gi|291581257|gb|ADE15714.1| integration host factor, beta subunit [Nitrosococcus halophilus Nc4] Length = 96 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS +D V TL + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAQRQALLSYRDVELAVKTLLEVMSQALAQGERIEIRGFGSFSLHYRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T V + + V FK L++R+ Sbjct: 61 GRNPKTGDAVPLPSKYVPHFKPGKELRERVDRSAHA 96 >gi|222530470|ref|YP_002574352.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] gi|222457317|gb|ACM61579.1| histone family protein DNA-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 92 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 59/89 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +L+K++S++ GL++KDS + + L I ++ +GE I++ F +F V+Q+ R G Sbjct: 1 MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I +V VFKA +LK+ + Sbjct: 61 RNPQTREEIIIPATKVPVFKAGKMLKQAV 89 >gi|56697343|ref|YP_167711.1| integration host factor subunit alpha [Ruegeria pomeroyi DSS-3] gi|81676195|sp|Q5LQJ4|IHFA_SILPO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|56679080|gb|AAV95746.1| integration host factor, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 100 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 1/99 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K Sbjct: 1 MSDKTLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN +T +EV I PRRV+ F+ S ++K+R+ R Sbjct: 61 SARVGRNPKTGEEVPIQPRRVLTFRPSHLMKERVAAGNR 99 >gi|325982719|ref|YP_004295121.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212] gi|325532238|gb|ADZ26959.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212] Length = 98 Score = 132 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 55/97 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + GL+++++ V + + E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAELADLLFENVGLNKREAKDMVESFYEEVRTALQNGEGVKLSGFGNFQLRSKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +E+ I RRVV F AS LK + + G+ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKALVEKNYHGK 98 >gi|121594735|ref|YP_986631.1| integration host factor subunit alpha [Acidovorax sp. JS42] gi|222110652|ref|YP_002552916.1| integration host factor subunit alpha [Acidovorax ebreus TPSY] gi|120606815|gb|ABM42555.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|221730096|gb|ACM32916.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] Length = 116 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 55/98 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T++ L + + GL++++S V F+ I S V G+ +K+S F F ++ K Sbjct: 19 SPALTKAQLADLLFEHIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAP 78 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV F AS+ LK++I + Sbjct: 79 RPGRNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDKA 116 >gi|125975139|ref|YP_001039049.1| nucleoid protein Hbs [Clostridium thermocellum ATCC 27405] gi|256003205|ref|ZP_05428197.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281418440|ref|ZP_06249459.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|125715364|gb|ABN53856.1| bacterial nucleoid protein Hbs [Clostridium thermocellum ATCC 27405] gi|255992896|gb|EEU02986.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281407524|gb|EFB37783.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|316939306|gb|ADU73340.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 1313] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ LS+KD+ + + + ++ +G+ I++ F +F V+++ R G Sbjct: 1 MNKTELIASMAEKSQLSKKDAEKALNAFIESVEEALAKGDKIQLVGFGSFEVRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + +FK LK+ + Sbjct: 61 RNPQTKEEIVIPATKTPIFKVGKGLKELVNK 91 >gi|257793014|ref|YP_003186413.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479706|gb|ACV60024.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ ++E GLS+KD + TLF+ I + GE ++I F TF ++++ +R Sbjct: 1 MNKRDLIRKTAEETGLSQKDCEAVINTLFDTIRKTVESGEKVQIIGFGTFELRERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V++ RRV FK + LK+ + Sbjct: 61 RNPRTGEAVEVPARRVPAFKPGAELKQAVQ 90 >gi|197286600|ref|YP_002152472.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320] gi|226328707|ref|ZP_03804225.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198] gi|227355207|ref|ZP_03839616.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC 29906] gi|194684087|emb|CAR45470.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320] gi|225201893|gb|EEG84247.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198] gi|227164716|gb|EEI49570.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC 29906] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +S++++ L++ + + + + + G+++++ F TF V + R G Sbjct: 1 MNKAELTESVAEKADLTKTQAKAAIEAFIDSVTGALKEGDSVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F A LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFTAGKALKDAVK 90 >gi|225573957|ref|ZP_03782602.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM 10507] gi|225038795|gb|EEG49041.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM 10507] Length = 102 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+ +++LV +++KE L++KD + + + + D +GE +++ F TF V ++ + Sbjct: 8 GNTMNKTELVAAMAKETKLAKKDVEAVLKSFIDVVSDELKKGEKVQLVGFGTFEVSKRAA 67 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QT + +KI + FKA LK + ++ Sbjct: 68 REGRNPQTGETMKISASKAPKFKAGKALKDLVNEE 102 >gi|15597934|ref|NP_251428.1| integration host factor subunit alpha [Pseudomonas aeruginosa PAO1] gi|107102269|ref|ZP_01366187.1| hypothetical protein PaerPA_01003326 [Pseudomonas aeruginosa PACS2] gi|116050728|ref|YP_790451.1| integration host factor subunit alpha [Pseudomonas aeruginosa UCBPP-PA14] gi|152984628|ref|YP_001347876.1| integration host factor subunit alpha [Pseudomonas aeruginosa PA7] gi|254235716|ref|ZP_04929039.1| integration host factor, alpha subunit [Pseudomonas aeruginosa C3719] gi|254241191|ref|ZP_04934513.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 2192] gi|296388799|ref|ZP_06878274.1| integration host factor subunit alpha [Pseudomonas aeruginosa PAb1] gi|313107807|ref|ZP_07793981.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 39016] gi|2495247|sp|Q51472|IHFA_PSEAE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|122259853|sp|Q02NN5|IHFA_PSEAB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918515|sp|A6V491|IHFA_PSEA7 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9948816|gb|AAG06126.1|AE004702_3 integration host factor, alpha subunit [Pseudomonas aeruginosa PAO1] gi|535711|gb|AAA65949.1| integration host factor alpha-subunit [Pseudomonas aeruginosa] gi|115585949|gb|ABJ11964.1| integration host factor, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126167647|gb|EAZ53158.1| integration host factor, alpha subunit [Pseudomonas aeruginosa C3719] gi|126194569|gb|EAZ58632.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 2192] gi|150959786|gb|ABR81811.1| integration host factor, alpha subunit [Pseudomonas aeruginosa PA7] gi|310880483|gb|EFQ39077.1| integration host factor, alpha subunit [Pseudomonas aeruginosa 39016] Length = 100 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|312126573|ref|YP_003991447.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311776592|gb|ADQ06078.1| histone family protein DNA-binding protein [Caldicellulosiruptor hydrothermalis 108] Length = 92 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 61/92 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +L+K++S++ GL++KDS + + L I ++ +GE I++ F +F V+Q+ R G Sbjct: 1 MSKEELIKAMSQKSGLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT +E+ I +V VFKA +LK+ ++ D Sbjct: 61 RNPQTKEEIIIPATKVPVFKAGKMLKRAVIAD 92 >gi|290968877|ref|ZP_06560414.1| putative integration host factor, beta subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781173|gb|EFD93764.1| putative integration host factor, beta subunit [Megasphaera genomosp. type_1 str. 28L] Length = 92 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + L++KD+ + V +F I +S +G+ ++I F TF V+Q+ +R G Sbjct: 1 MNKTELIANVATKSDLTKKDAEKAVKAVFESISESLTKGDKVQIIGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN + N+ ++I+ + FKA LK + + Sbjct: 61 RNPRNNEPIQIEASKTPAFKAGKQLKDLVNN 91 >gi|238757777|ref|ZP_04618960.1| Integration host factor subunit alpha [Yersinia aldovae ATCC 35236] gi|238704020|gb|EEP96554.1| Integration host factor subunit alpha [Yersinia aldovae ATCC 35236] Length = 98 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 53/95 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVETATP 96 >gi|302391837|ref|YP_003827657.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM 5501] gi|302203914|gb|ADL12592.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM 5501] Length = 99 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 8/97 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--------EAIKISSFATFHV 56 +T+++LV I+ + GL++KD+ V + ++ + +++ F +F V Sbjct: 1 MTKTELVDRIADKTGLTKKDTKETVDAFTEVVTETLQEEANKDEDERDKVQLIGFGSFEV 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + + +R GRN QT +E++I R+V FKA LK+ + Sbjct: 61 RDRSARKGRNPQTGEEIEIPARKVPAFKAGKGLKEAV 97 >gi|229070625|ref|ZP_04203863.1| DNA-binding protein HU [Bacillus cereus F65185] gi|228712530|gb|EEL64467.1| DNA-binding protein HU [Bacillus cereus F65185] Length = 93 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ L + + ++ GE ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQALLDTVTNALANGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|322834043|ref|YP_004214070.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] gi|321169244|gb|ADW74943.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRVLDAVLASVTDTLKAGDEVALVGFGTFSVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIAAAKVPGFRAGKALKDAVNG 91 >gi|188026554|ref|ZP_02962557.2| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC 25827] gi|188019405|gb|EDU57445.1| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC 25827] Length = 96 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ E +S+ + R V + S +G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDQIASEANISKAAAGRVVDAFVASVTTSLSKGDDVALVGFGTFTVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V F+ LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAVN 95 >gi|52424240|ref|YP_087377.1| HimA protein [Mannheimia succiniciproducens MBEL55E] gi|52306292|gb|AAU36792.1| HimA protein [Mannheimia succiniciproducens MBEL55E] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S G+++++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLDAITASLKAGDSVQLIGFGTFKVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E++I +V F + LK + Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAVNG 91 >gi|218891082|ref|YP_002439948.1| integration host factor subunit alpha [Pseudomonas aeruginosa LESB58] gi|226709740|sp|B7V312|IHFA_PSEA8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|218771307|emb|CAW27072.1| integration host factor, alpha subunit [Pseudomonas aeruginosa LESB58] Length = 100 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + + E +K+S F F ++ K R Sbjct: 3 ALTKAEIAERLYEELGLNKREAKELVELFFEEIRQALEQNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|169335876|ref|ZP_02863069.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis DSM 17244] gi|169258614|gb|EDS72580.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis DSM 17244] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++S++ GL++K+ + I ++ + + + + F TF VK++ R G Sbjct: 1 MNKSELVSALSEKTGLTKKECDNCLGAFIETITETLQKQDKVSLVGFGTFEVKERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +++ I VFKA LK + Sbjct: 61 INPQTKEKITIPASNAPVFKAGKALKDSLN 90 >gi|55821216|ref|YP_139658.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55823128|ref|YP_141569.1| histone-like DNA-binding protein [Streptococcus thermophilus CNRZ1066] gi|116627943|ref|YP_820562.1| histone-like DNA-binding protein [Streptococcus thermophilus LMD-9] gi|3334160|sp|P96045|DBH_STRTR RecName: Full=DNA-binding protein HU gi|1850896|emb|CAA72098.1| hsth [Streptococcus thermophilus] gi|55737201|gb|AAV60843.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55739113|gb|AAV62754.1| histone-like DNA-binding protein [Streptococcus thermophilus CNRZ1066] gi|116101220|gb|ABJ66366.1| bacterial nucleoid protein Hbs [Streptococcus thermophilus LMD-9] gi|312278530|gb|ADQ63187.1| Histone-like DNA binding protein [Streptococcus thermophilus ND03] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I +V FKA LK + Sbjct: 63 NPQTGETISIAASKVPAFKAGKALKDAVK 91 >gi|117923410|ref|YP_864027.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1] gi|117607166|gb|ABK42621.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1] Length = 96 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 61/93 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ + GLS+K+S V ++F I + G+ +KIS F F +++K R Sbjct: 2 TMTKADIVQTVYQRLGLSKKESADIVESVFELIRNQLENGDPVKISGFGNFTMREKNPRQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +EV+I RRVV FKAS IL ++ + Sbjct: 62 GRNPKTGEEVEISARRVVTFKASQILLNKVNNG 94 >gi|78188340|ref|YP_378678.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] gi|78170539|gb|ABB27635.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+K+ L++ D+ R +T + + S G+ + + F TF V + R G Sbjct: 1 MSKAELVEKIAKQADLTKADAERALTAFVDVMTASLKAGDDVALVGFGTFSVGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK I Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89 >gi|88810671|ref|ZP_01125928.1| Integration host factor, alpha subunit [Nitrococcus mobilis Nb-231] gi|88792301|gb|EAR23411.1| Integration host factor, alpha subunit [Nitrococcus mobilis Nb-231] Length = 100 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ V + F EI + +G +K+S F F ++ K R Sbjct: 2 ALTKAEMAERLFDELGLNKREAKELVESFFEEIRCALEQGTPVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPICARRVVTFRPGQKLKARVE 92 >gi|254510042|ref|ZP_05122109.1| integration host factor, alpha subunit [Rhodobacteraceae bacterium KLH11] gi|221533753|gb|EEE36741.1| integration host factor, alpha subunit [Rhodobacteraceae bacterium KLH11] Length = 100 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 45/96 (46%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ N + D+ VRGE +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLSEAVFREVGLSRNESAQLVESVLNHMSDALVRGEQVKISSFGTFSVRDKTAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +GRN +T +EV I PRRV+ F+ S ++K R+ R Sbjct: 64 IGRNPKTGEEVPIQPRRVLTFRPSHLMKDRVAAGNR 99 >gi|47705|emb|CAA34713.1| integration host factor (AA 1-99) [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 99 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 53/98 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFGLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVESASPKEE 99 >gi|84393074|ref|ZP_00991840.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|86147879|ref|ZP_01066184.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|148981204|ref|ZP_01816330.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] gi|84376326|gb|EAP93208.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|85834306|gb|EAQ52459.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|145960960|gb|EDK26286.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + D+ G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDSVK 90 >gi|148251722|ref|YP_001236307.1| integration host factor subunit beta [Bradyrhizobium sp. BTAi1] gi|166918540|sp|A5E8A7|IHFB_BRASB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|146403895|gb|ABQ32401.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp. BTAi1] Length = 103 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T V +D + V FK +++R+ D + DD Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNPAGAADTDD 103 >gi|152996604|ref|YP_001341439.1| integration host factor subunit alpha [Marinomonas sp. MWYL1] gi|226709731|sp|A6VYH5|IHFA_MARMS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|150837528|gb|ABR71504.1| integration host factor, alpha subunit [Marinomonas sp. MWYL1] Length = 98 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 56/95 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL +++ GLS+KD+ V F+ + S + + +K+S F F V++K R Sbjct: 3 SLTKADLAENLVDSIGLSKKDAKDLVEGFFDVVRSSLIERQQVKLSGFGNFEVREKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I R VV F+ LK ++ D M+ Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKSKVEDYMQ 97 >gi|77360840|ref|YP_340415.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas haloplanktis TAC125] gi|123588704|sp|Q3IIL3|IHFA_PSEHT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|76875751|emb|CAI86972.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas haloplanktis TAC125] Length = 99 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + ++ G+++KD+ V F EI + +GE IK+S F F ++ K R Sbjct: 2 ALTKADIAEHLFEKLGINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92 >gi|153833703|ref|ZP_01986370.1| integration host factor, alpha subunit [Vibrio harveyi HY01] gi|156974397|ref|YP_001445304.1| integration host factor subunit alpha [Vibrio harveyi ATCC BAA-1116] gi|269962174|ref|ZP_06176527.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3] gi|166918532|sp|A7MVH4|IHFA_VIBHB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148869982|gb|EDL68942.1| integration host factor, alpha subunit [Vibrio harveyi HY01] gi|156525991|gb|ABU71077.1| hypothetical protein VIBHAR_02112 [Vibrio harveyi ATCC BAA-1116] gi|269833005|gb|EEZ87111.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3] Length = 98 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|238754238|ref|ZP_04615595.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473] gi|238707485|gb|EEP99845.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKAGDDVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90 >gi|229177513|ref|ZP_04304892.1| DNA-binding protein HU [Bacillus cereus 172560W] gi|228605960|gb|EEK63402.1| DNA-binding protein HU [Bacillus cereus 172560W] Length = 93 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|260587366|ref|ZP_05853279.1| DNA-binding protein HU [Blautia hansenii DSM 20583] gi|331083667|ref|ZP_08332778.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA] gi|260542233|gb|EEX22802.1| DNA-binding protein HU [Blautia hansenii DSM 20583] gi|330403878|gb|EGG83430.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV +++++ LS+KD+ + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNRTELVAAMAEKTQLSKKDADLALKAFIDVVSEEMQKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I + FKA LK + Sbjct: 61 RNPQTGETMTIAASKSPKFKAGKALKDLVN 90 >gi|148255979|ref|YP_001240564.1| integration host factor subunit alpha [Bradyrhizobium sp. BTAi1] gi|166918499|sp|A5EKG4|IHFA_BRASB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|146408152|gb|ABQ36658.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium sp. BTAi1] Length = 119 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 70/104 (67%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T EV I PRRV+VFK S+ILK+RI K N + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGQQGSGKMNGE 108 >gi|152997229|ref|YP_001342064.1| integration host factor subunit beta [Marinomonas sp. MWYL1] gi|189045039|sp|A6W0A0|IHFB_MARMS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150838153|gb|ABR72129.1| integration host factor, beta subunit [Marinomonas sp. MWYL1] Length = 102 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I ++ L KD + + + + DS GE I+I F +F + + R+ Sbjct: 1 MTKSELIELLIDQQSHLPVKDVEQAIKAMLEHMSDSLANGERIEIRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V++ + V FK L++ + Sbjct: 61 GRNPKTGESVELSAKYVPHFKPGKELRELVN 91 >gi|84516338|ref|ZP_01003698.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis SKA53] gi|84510034|gb|EAQ06491.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis SKA53] Length = 100 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 63/96 (65%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ E GLSR DS V ++ + DS V G+ +KISSF TF V+ K +R Sbjct: 4 KTLTRMDLAEAVHNEVGLSRNDSADLVESVLTHVSDSLVAGDTVKISSFGTFAVRDKAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 64 VGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVASGNK 99 >gi|288904847|ref|YP_003430069.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34] gi|306830879|ref|ZP_07464041.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977779|ref|YP_004287495.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731573|emb|CBI13128.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34] gi|304426902|gb|EFM30012.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177707|emb|CBZ47751.1| DNA-binding protein HU [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 91 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGEEIEIAASKVPAFKAGKALKDAVK 91 >gi|124267071|ref|YP_001021075.1| integration host factor alpha-subunit [Methylibium petroleiphilum PM1] gi|124259846|gb|ABM94840.1| integration host factor alpha-subunit [Methylibium petroleiphilum PM1] Length = 113 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 55/100 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + + + GL++++S V F I V G+ +K+S F F +++K Sbjct: 11 TPTLTKAELAELLFERLGLNKRESKDMVEAFFELIHGQLVEGQDVKLSGFGNFQIRRKAP 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R GRN +T + + I R VV F AS LK + D+ + Sbjct: 71 RPGRNPRTGEAIPIKARNVVTFHASHKLKGVVQGDIPSAE 110 >gi|120611942|ref|YP_971620.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|120590406|gb|ABM33846.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] Length = 109 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ FG L+++D+ V T+ + + D+ VRG I++ F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ + V I +RV FK L++ + D R + PS + Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAV--DRRTAEMGIGIAADPSDA 108 >gi|261250477|ref|ZP_05943052.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891] gi|260939046|gb|EEX95033.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F A LK + Sbjct: 61 RNPKTGDEIQIAAANVPAFVAGKALKDAVK 90 >gi|134288835|ref|YP_001111235.1| gp35 [Burkholderia phage phiE255] gi|134132171|gb|ABO60692.1| gp35 [Burkholderia phage phiE255] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++ E GL++ DS + + I S +G+ + ++ F F V + +R G Sbjct: 1 MNKSDLINHVAAETGLTKADSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T +E+KI + FKA LK + Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90 >gi|146328691|ref|YP_001209944.1| integration host factor, alpha subunit [Dichelobacter nodosus VCS1703A] gi|189044699|sp|A5EXT4|IHFA_DICNV RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|146232161|gb|ABQ13139.1| integration host factor, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 98 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V++I + G+ R ++ V LF EI GE +K+S F F ++ K R Sbjct: 2 TLTKADIVEAIIAQIGIPRPEAREIVDDLFEEIRSCLATGEPVKLSGFGNFELRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV FKA LK R+ + Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARVAESKP 96 >gi|304310704|ref|YP_003810302.1| Integration host factor alpha subunit [gamma proteobacterium HdN1] gi|301796437|emb|CBL44645.1| Integration host factor alpha subunit [gamma proteobacterium HdN1] Length = 100 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 56/98 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + +E GL+++++ V F+EI + E +K+S F F ++ K R Sbjct: 3 ALTKADLAERLFEELGLNKREAKEMVELFFDEIRVCLEQNEHVKLSGFGNFDLRNKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK+R+ ++ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRVEAYAGAKQ 100 >gi|23014673|ref|ZP_00054478.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 106 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 45/98 (45%), Positives = 69/98 (70%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+ L +++ +E GLSR +S + + +EI + +G+A+KISSF +F V+ KG R Sbjct: 4 KTITRAQLSEAVYQEVGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +GRN +T +EV I PRRV+VF+ S +LKK+I D + + Sbjct: 64 IGRNPKTGEEVPITPRRVLVFRPSQLLKKKINDGVAAK 101 >gi|163843049|ref|YP_001627453.1| integration host factor subunit alpha [Brucella suis ATCC 23445] gi|189044695|sp|B0CLA3|IHFA_BRUSI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|163673772|gb|ABY37883.1| integration host factor, alpha subunit [Brucella suis ATCC 23445] Length = 107 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 75/102 (73%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DLV+++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLVEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 63 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 104 >gi|59713004|ref|YP_205780.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio fischeri ES114] gi|197336341|ref|YP_002157189.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] gi|59481105|gb|AAW86892.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio fischeri ES114] gi|197317831|gb|ACH67278.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +I+++ LS+ + + + + GE +++ F TF V + +R G Sbjct: 1 MNKTQLIDAIAEKADLSKAQAKAALEATLEGVTGALKDGEQVQLIGFGTFKVNNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V F A LK+ + Sbjct: 61 RNPKTGEEIQIKAAKVPAFVAGKALKESVN 90 >gi|117921099|ref|YP_870291.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] gi|117613431|gb|ABK48885.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+++ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE+KI ++ FKA LK + Sbjct: 61 RNPQTGQEIKIAAAKIPAFKAGKALKDAVN 90 >gi|238751009|ref|ZP_04612505.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380] gi|238710699|gb|EEQ02921.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380] Length = 90 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDEVALVGFGTFAVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90 >gi|326803714|ref|YP_004321532.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a] gi|326651370|gb|AEA01553.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a] Length = 92 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV+ +++ G S+K+ V +F+ I + GE ++I F F V+++ +R GR Sbjct: 3 NKADLVQKVAESTGESKKNVQPVVDAVFSSIENFLADGENVQIIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGEEIQIPASKVPAFKAGKGLKDVVKG 92 >gi|319404102|emb|CBI77692.1| DNA-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 92 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV S++++ G+S+ + V + ++ G ++I F +F V + + G Sbjct: 1 MNKSELVNSVAEKAGISKAQAGASVDAFIASVTEALASGGDVRIPGFGSFEVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + + Sbjct: 61 RNPSTGAEITIPARSVPKFSAGKSLKEAVNN 91 >gi|262273289|ref|ZP_06051104.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886] gi|262222662|gb|EEY73972.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ LS+ + + I + G+ +++ F TF V + +R G Sbjct: 1 MNKTNLIDLIAEKADLSKAQAKAALEATLAGIEGALKDGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE++I V F A LK + Sbjct: 61 RNPQTGQEIQIAAANVPAFVAGKALKDAVK 90 >gi|153009845|ref|YP_001371060.1| integration host factor subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|166918512|sp|A6X1X7|IHFA_OCHA4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|151561733|gb|ABS15231.1| integration host factor, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 107 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 74/104 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 63 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRETKSQ 106 >gi|261210560|ref|ZP_05924853.1| DNA-binding protein HU-beta [Vibrio sp. RC341] gi|260840345|gb|EEX66916.1| DNA-binding protein HU-beta [Vibrio sp. RC341] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 45/88 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAANADISKASAGRALDAFIEAMSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E+KI +V FKA LK Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALKDA 88 >gi|319898779|ref|YP_004158872.1| DNA-binding protein [Bartonella clarridgeiae 73] gi|319402743|emb|CBI76290.1| DNA-binding protein [Bartonella clarridgeiae 73] Length = 92 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV S++++ G+S+ + V + ++ G +++ F +F V + + G Sbjct: 1 MNKSELVNSVAEKAGISKAQAGASVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + + Sbjct: 61 RNPSTGAEITIPARSVPKFSAGKGLKEAVNN 91 >gi|188584712|ref|YP_001916257.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349399|gb|ACB83669.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF] Length = 92 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 56/92 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ +++KD+ + V +F+ I D + + +++ F TF V+++ +R G Sbjct: 1 MNKTELISKVAERSEMTKKDTEKVVNEVFDVISDQLAKEDKVQLIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T + ++I+ +V FKA LK+++ + Sbjct: 61 RNPSTGEVIQIEATKVPAFKAGKALKEKVKNG 92 >gi|83745916|ref|ZP_00942973.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|83727606|gb|EAP74727.1| DNA-binding protein HU [Ralstonia solanacearum UW551] Length = 123 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++DL+ ++ + +S+ + R + L I D+ G ++ + F TF V Q+ +R Sbjct: 33 AMNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARA 92 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +KI+ +V FK LK + Sbjct: 93 GRNPRTGATIKIEGAKVAKFKPGKALKDALN 123 >gi|32034579|ref|ZP_00134735.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207602|ref|YP_001052827.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae L20] gi|165975570|ref|YP_001651163.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149383|ref|YP_001967908.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249818|ref|ZP_07336022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251938|ref|ZP_07338109.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244922|ref|ZP_07527019.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247097|ref|ZP_07529149.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249318|ref|ZP_07531312.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251641|ref|ZP_07533546.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253876|ref|ZP_07535728.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256139|ref|ZP_07537926.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258330|ref|ZP_07540071.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260571|ref|ZP_07542263.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262701|ref|ZP_07544329.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096394|gb|ABN73222.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875671|gb|ABY68719.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914514|gb|ACE60766.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649368|gb|EFL79553.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651385|gb|EFL81537.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854087|gb|EFM86295.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856346|gb|EFM88497.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858612|gb|EFM90674.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860838|gb|EFM92846.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863080|gb|EFM95022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865320|gb|EFM97216.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867514|gb|EFM99361.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869648|gb|EFN01433.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871956|gb|EFN03672.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ LS+KD+ + N I +S G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIDAIAAGAELSKKDAKAALEATLNAISESLKNGDTVQLIGFGTFKVNERNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +V F A LK + Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALKDLVK 90 >gi|71908284|ref|YP_285871.1| integration host factor subunit alpha [Dechloromonas aromatica RCB] gi|123774328|sp|Q47CN0|IHFA2_DECAR RecName: Full=Integration host factor subunit alpha 2; Short=IHF-alpha 2 gi|71847905|gb|AAZ47401.1| Integration host factor, alpha subunit [Dechloromonas aromatica RCB] Length = 100 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 55/96 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI ++ G+ +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T QE+ I RRVV F AS LK + G Sbjct: 62 GRNPKTGQEIPITARRVVTFHASQKLKSDVELAFDG 97 >gi|144899463|emb|CAM76327.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+ + V +F+ I + G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLVTAVAASAGLSKADAAKAVDGVFDAISGALAGGDDVRLVGFGTFAVSERAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI + FKA LK + Sbjct: 61 RNPRTGETIKIPASKQPKFKAGKGLKDSVQ 90 >gi|285017870|ref|YP_003375581.1| integration host factor alpha-subunit (ihf-alpha) protein [Xanthomonas albilineans GPE PC73] gi|283473088|emb|CBA15593.1| putative integration host factor alpha-subunit (ihf-alpha) protein [Xanthomonas albilineans] Length = 99 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 55/91 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + ++ +G +K+S F F +++K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92 >gi|225571163|ref|ZP_03780161.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM 15053] gi|225159994|gb|EEG72613.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM 15053] Length = 91 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KDS + + + I +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEQAELSKKDSEKALKAFVDVITAELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + FKA LK + Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDAVN 90 >gi|146282706|ref|YP_001172859.1| integration host factor subunit alpha [Pseudomonas stutzeri A1501] gi|166918518|sp|A4VM16|IHFA_PSEU5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|145570911|gb|ABP80017.1| integration host factor, alpha subunit [Pseudomonas stutzeri A1501] gi|327481045|gb|AEA84355.1| integration host factor subunit alpha [Pseudomonas stutzeri DSM 4166] Length = 100 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|332969967|gb|EGK08967.1| DNA-binding protein HU-beta [Kingella kingae ATCC 23330] Length = 122 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + +S+L+ +I+ E GL++ D+++ + + ++ G++I + F TF V + Sbjct: 20 GKIMNKSELIDAIATESGLTKTDASKALDAFTEVVKNTLKTGDSITLVGFGTFKVADRAE 79 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R G N +T + + I RV F LK ++ + K K Sbjct: 80 RQGLNPKTKEAITIPAARVPKFTPGKALKDVLVAEQPAAKKKK 122 >gi|221134660|ref|ZP_03560963.1| integration host factor, alpha subunit [Glaciecola sp. HTCC2999] Length = 99 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GL++KD+ V F EI S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFEKVGLNKKDTKDLVEAFFEEIKVSLENGEQVKLSGFGNFDLRTKKERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV FK LK R+ + Sbjct: 62 GRNPKTGEDIPIKARRVVTFKPGQKLKSRVENA 94 >gi|323487339|ref|ZP_08092639.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum WAL-14163] gi|323694222|ref|ZP_08108398.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673] gi|323399384|gb|EGA91782.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum WAL-14163] gi|323501695|gb|EGB17581.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673] Length = 91 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + + + + D V+GE I++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAIKAFTDVVSDELVKGEKIQLVGFGTFEVAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FKA LK + Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALKDMVN 90 >gi|307942847|ref|ZP_07658192.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4] gi|307773643|gb|EFO32859.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4] Length = 99 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +EI ++ +RG+ +++ F F VK + +R+ Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T Q+V+++ + V FK ++ R+ D + Sbjct: 61 GRNPRTGQKVEVEEKHVPFFKTGKEMRLRLNDGV 94 >gi|330721962|gb|EGG99900.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC2047] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ E +S+ + R + + + + +G + + F TF VK + +R G Sbjct: 1 MNKSELIDAIAAEADISKASAGRALDAAVDAVTNELKKGGQVSLVGFGTFSVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I ++ FKA LK Sbjct: 61 RNPQTGETIQIKAAKIPSFKAGKALKDA 88 >gi|319654516|ref|ZP_08008600.1| non-specific DNA-binding protein [Bacillus sp. 2_A_57_CT2] gi|317393826|gb|EFV74580.1| non-specific DNA-binding protein [Bacillus sp. 2_A_57_CT2] Length = 92 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ LS+KD+++ V +F + + G+ + F F V+++ +R G Sbjct: 1 MNKTELVNAVAERSELSKKDASKAVDAVFEAVTNVLKEGKKAQFLGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT +E++I +V F LK + + Sbjct: 61 RNPQTGEEIEIAASKVPAFSPGKALKDAVKNS 92 >gi|220934628|ref|YP_002513527.1| integration host factor, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] gi|254803522|sp|B8GRI6|IHFA_THISH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|219995938|gb|ACL72540.1| integration host factor, alpha subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 99 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F E+ + RGE +K+S F F ++ K R Sbjct: 2 ALTKADMSERLFEELGLNKREAKELVEMFFEEVRMALERGEQVKLSGFGNFTLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLKARVE 92 >gi|27363508|ref|NP_759036.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6] gi|37679291|ref|NP_933900.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016] gi|27359624|gb|AAO08563.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6] gi|37198034|dbj|BAC93871.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016] Length = 97 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ ++ LV+SI+ +S+ + R + + + G+ + + F TF V+ + +R Sbjct: 7 TVNKTQLVESIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +E++I +V FKA LK Sbjct: 67 GRNPKTGEEIQIAEAKVPSFKAGKALKDA 95 >gi|312862684|ref|ZP_07722924.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396] gi|322516639|ref|ZP_08069553.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124] gi|311101544|gb|EFQ59747.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396] gi|322124909|gb|EFX96333.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124] Length = 91 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLATGEKVQLIGFGNFEVRERAARQGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I +V FKA LK + Sbjct: 63 NPQTGETISIAASKVPAFKAGKALKDAVK 91 >gi|212709200|ref|ZP_03317328.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens DSM 30120] gi|212688112|gb|EEB47640.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens DSM 30120] Length = 96 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ E +S+ + R V + S +G+ + + F TF+V+Q+ +R G Sbjct: 6 VNKSQLIEKIAAEANISKAAAGRVVDAFVASVTTSLSKGDDVTLVGFGTFNVRQRAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+KI +V F+A LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAVNG 96 >gi|71281140|ref|YP_270448.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H] gi|71146880|gb|AAZ27353.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ +S+ + R + + + D GE + + F TF V+ + +R G Sbjct: 1 MNKSQLIEKIAAGADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I ++ FKA LK Sbjct: 61 RNPQTGATIQIAAAKIPSFKAGKALKDA 88 >gi|145220310|ref|YP_001131019.1| histone family protein DNA-binding protein [Prosthecochloris vibrioformis DSM 265] gi|145206474|gb|ABP37517.1| histone family protein DNA-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 102 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 58/100 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V +LF I DS G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNVIAHRTGLTKNETETVVDSLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 R RN +T ++V ++P+ V FK S K+ + + ++G Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLKGN 100 >gi|153212317|ref|ZP_01948105.1| integration host factor, alpha subunit [Vibrio cholerae 1587] gi|258620238|ref|ZP_05715277.1| integration host factor, alpha subunit [Vibrio mimicus VM573] gi|258624402|ref|ZP_05719349.1| integration host factor, alpha subunit [Vibrio mimicus VM603] gi|262171747|ref|ZP_06039425.1| integration host factor alpha subunit [Vibrio mimicus MB-451] gi|124116695|gb|EAY35515.1| integration host factor, alpha subunit [Vibrio cholerae 1587] gi|258583249|gb|EEW08051.1| integration host factor, alpha subunit [Vibrio mimicus VM603] gi|258587596|gb|EEW12306.1| integration host factor, alpha subunit [Vibrio mimicus VM573] gi|261892823|gb|EEY38809.1| integration host factor alpha subunit [Vibrio mimicus MB-451] Length = 98 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|161598603|ref|YP_001573818.1| small DNA-binding protein [Bacillus thuringiensis serovar israelensis] gi|228905297|ref|ZP_04069279.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] gi|21685470|emb|CAD30132.1| small DNA-binding protein (bacterial histone-like family) [Bacillus thuringiensis serovar israelensis] gi|228854334|gb|EEM99010.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222] Length = 92 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + L + ++ V + I + G+ +++ F +F VK++ +R G Sbjct: 1 MNKSELIKQVAIQSELKKPQASLAVDAVLESIQHALQNGDHVQLFGFGSFEVKERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + + I + FKA LK+ + Sbjct: 61 RNPHTGEALTIPAGKTPAFKAGKALKEAVN 90 >gi|226954296|ref|ZP_03824760.1| integration host factor (IHF), alpha subunit, DNA-binding protein [Acinetobacter sp. ATCC 27244] gi|294649378|ref|ZP_06726809.1| integration host factor subunit alpha [Acinetobacter haemolyticus ATCC 19194] gi|226834967|gb|EEH67350.1| integration host factor (IHF), alpha subunit, DNA-binding protein [Acinetobacter sp. ATCC 27244] gi|292824748|gb|EFF83520.1| integration host factor subunit alpha [Acinetobacter haemolyticus ATCC 19194] Length = 98 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|21673134|ref|NP_661199.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS] gi|21646210|gb|AAM71541.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS] Length = 101 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 58/101 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T T++DLV I++ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGQTTTKADLVNVIAQRTGLTKNETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R RN +T ++V ++P+ V FK S K + + ++ K Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLKANK 101 >gi|301166555|emb|CBW26131.1| integration host factor alpha-subunit (IHF-alpha) [Bacteriovorax marinus SJ] Length = 137 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 2/112 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++D+V+ + KE G S+K++ V +F I D+ RGE +KIS F F ++ K +RV Sbjct: 2 SLTKADIVERVYKEAGFSKKEAADLVDLVFKVIKDTLARGEKVKISGFGNFSIRDKATRV 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD--DMRGRKCNKDDVTSPSGS 113 GRN QT ++I RRV+ FK S +LK+ + R +D + P+ Sbjct: 62 GRNPQTGSAMEISARRVLTFKPSQVLKEDVTARFAHRLDDKGNEDTSLPAKE 113 >gi|255263450|ref|ZP_05342792.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62] gi|255105785|gb|EET48459.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62] Length = 100 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 1/99 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ E GLSR DS + V ++ + D+ V+GE +KISSF TF V++K Sbjct: 1 MSEKTLTRMDLSEAVFNEVGLSRNDSAQLVESVLGHMSDALVKGEQVKISSFGTFAVREK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 61 AARVGRNPKTGEEVPIHPRRVLTFRPSHLMKDRVAAGNK 99 >gi|194595686|gb|ACF77129.1| bacterial nucleoid DNA-binding protein [Azospirillum brasilense] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ GLS+ D+T+ V +F+ I DS GE +++ F TF V ++ + G Sbjct: 1 MNKNDLVAHVADAVGLSKTDATKAVDAIFDGIADSLKNGEEVRLVGFGTFAVSERAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++ I + FK LK + Sbjct: 61 RNPRTGEKIAIPASKQPKFKPGKTLKDGLK 90 >gi|167624683|ref|YP_001674977.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] gi|212636024|ref|YP_002312549.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3] gi|167354705|gb|ABZ77318.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] gi|212557508|gb|ACJ29962.1| Histone-like bacterial DNA-binding protein [Shewanella piezotolerans WP3] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + D G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTDGLKEGDKIALVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90 >gi|126668934|ref|ZP_01739875.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17] gi|126626597|gb|EAZ97253.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17] Length = 90 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I++ +S+ + R + + I + + + + + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAESADISKAAAGRALDAMTTSITSALKKDDQVTLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQIKASKVPGFKAGKALKDAVK 90 >gi|94971131|ref|YP_593179.1| nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345] gi|94553181|gb|ABF43105.1| bacterial nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345] Length = 110 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +S+ L+RKDS V T+F+ I S G+ I+I F +F +Q+ RVG Sbjct: 1 MTKADLIDEVSRLAELTRKDSEVIVETIFDSIVHSLRAGDKIEIRGFGSFRTRQRKPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V++ +++ FK S LK + D Sbjct: 61 RNPKTGDRVEVPAKKIPFFKPSKELKDMVND 91 >gi|89072100|ref|ZP_01158696.1| DNA-binding protein HU [Photobacterium sp. SKA34] gi|90580382|ref|ZP_01236188.1| DNA-binding protein HU [Vibrio angustum S14] gi|89052201|gb|EAR57652.1| DNA-binding protein HU [Photobacterium sp. SKA34] gi|90438291|gb|EAS63476.1| DNA-binding protein HU [Vibrio angustum S14] Length = 91 Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV I+++ ++++ +T + + I + + G + + F TF V + +R+G Sbjct: 1 MNKKDLVSHIAEQADINKEHATAALNAIVESITSALIDGNDVSLVGFGTFKVTHRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA LK ++ Sbjct: 61 RNPKTGEAIQIAASKSPTFKAGKELKAQVN 90 >gi|319407115|emb|CBI80752.1| DNA-binding protein [Bartonella sp. 1-1C] Length = 92 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV S++++ G+S+ + V + ++ G ++I F +F V + + G Sbjct: 1 MNKSELVNSVAEKAGISKAQAGASVDAFIASVTEALASGGDVRIPGFGSFEVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + + Sbjct: 61 RNPSTGAEIIIPARSVPKFSAGKSLKEAVNN 91 >gi|300721652|ref|YP_003710927.1| DNA-binding protein HU-alpha [Xenorhabdus nematophila ATCC 19061] gi|297628144|emb|CBJ88695.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA replication and in rpo translation [Xenorhabdus nematophila ATCC 19061] Length = 90 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ L++ + + + N I +S G+A+++ F TF V + R G Sbjct: 1 MNKTELVDAIAAGADLTKTQAKAALESTLNAITESLKNGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F A LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFSAGKALKDAVK 90 >gi|332284513|ref|YP_004416424.1| integration host factor beta-subunit [Pusillimonas sp. T7-7] gi|330428466|gb|AEC19800.1| integration host factor beta-subunit [Pusillimonas sp. T7-7] Length = 106 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 55/96 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+++L + + GL+++++ V T F EI DS RG +K+S F F V+ K R Sbjct: 5 RTLTKAELAELLFDRVGLNKREAKDIVDTFFEEIRDSLARGVEVKLSGFGNFQVRDKPPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + I RRVV F AS LK + + Sbjct: 65 PGRNPKTGEVIPIAARRVVTFHASQKLKTVVESAGK 100 >gi|326795746|ref|YP_004313566.1| Integration host factor subunit alpha [Marinomonas mediterranea MMB-1] gi|326546510|gb|ADZ91730.1| Integration host factor subunit alpha [Marinomonas mediterranea MMB-1] Length = 98 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 57/95 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL +++ + GL++KD+ V F I +S V E +K+S F F V++K R Sbjct: 3 SLTKADLAENLVETIGLTKKDAKDLVEGFFQVIRESLVDREQVKLSGFGNFEVREKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I R VV F+ LK ++ + M+ Sbjct: 63 GRNPKTGEEIPITARTVVTFRPGQKLKAKVENYMQ 97 >gi|169634330|ref|YP_001708066.1| integration host factor subunit alpha [Acinetobacter baumannii SDF] gi|169797146|ref|YP_001714939.1| integration host factor subunit alpha [Acinetobacter baumannii AYE] gi|184156927|ref|YP_001845266.1| integration host factor subunit alpha [Acinetobacter baumannii ACICU] gi|213156063|ref|YP_002318108.1| integration host factor, alpha subunit [Acinetobacter baumannii AB0057] gi|215484609|ref|YP_002326844.1| integration host factor, alpha subunit [Acinetobacter baumannii AB307-0294] gi|239500688|ref|ZP_04659998.1| integration host factor subunit alpha [Acinetobacter baumannii AB900] gi|260551930|ref|ZP_05825792.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260556048|ref|ZP_05828267.1| integration host factor, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|262281021|ref|ZP_06058804.1| integration host factor alpha subunit [Acinetobacter calcoaceticus RUH2202] gi|293610417|ref|ZP_06692718.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|299771523|ref|YP_003733549.1| integration host factor subunit alpha [Acinetobacter sp. DR1] gi|301347474|ref|ZP_07228215.1| integration host factor subunit alpha [Acinetobacter baumannii AB056] gi|301510732|ref|ZP_07235969.1| integration host factor subunit alpha [Acinetobacter baumannii AB058] gi|301596052|ref|ZP_07241060.1| integration host factor subunit alpha [Acinetobacter baumannii AB059] gi|332856885|ref|ZP_08436294.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013150] gi|332867212|ref|ZP_08437477.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013113] gi|332873996|ref|ZP_08441931.1| integration host factor, alpha subunit [Acinetobacter baumannii 6014059] gi|226707360|sp|B7GZZ4|IHFA_ACIB3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707361|sp|B7I698|IHFA_ACIB5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707362|sp|B2HTI2|IHFA_ACIBC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707363|sp|B0VV83|IHFA_ACIBS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707364|sp|B0V5Q4|IHFA_ACIBY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707551|sp|A3M2B0|IHFA_ACIBT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|169150073|emb|CAM87967.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter baumannii AYE] gi|169153122|emb|CAP02196.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter baumannii] gi|183208521|gb|ACC55919.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|193076387|gb|ABO11054.2| integration host factor alpha subunit [Acinetobacter baumannii ATCC 17978] gi|213055223|gb|ACJ40125.1| integration host factor, alpha subunit [Acinetobacter baumannii AB0057] gi|213987020|gb|ACJ57319.1| integration host factor, alpha subunit [Acinetobacter baumannii AB307-0294] gi|260405333|gb|EEW98828.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260410103|gb|EEX03402.1| integration host factor, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|262257921|gb|EEY76656.1| integration host factor alpha subunit [Acinetobacter calcoaceticus RUH2202] gi|292827649|gb|EFF86013.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|298701611|gb|ADI92176.1| integration host factor subunit alpha [Acinetobacter sp. DR1] gi|322506823|gb|ADX02277.1| ihfA [Acinetobacter baumannii 1656-2] gi|323516692|gb|ADX91073.1| integration host factor subunit alpha [Acinetobacter baumannii TCDC-AB0715] gi|325124572|gb|ADY84095.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter calcoaceticus PHEA-2] gi|332726939|gb|EGJ58444.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013150] gi|332734151|gb|EGJ65283.1| integration host factor, alpha subunit [Acinetobacter baumannii 6013113] gi|332737737|gb|EGJ68629.1| integration host factor, alpha subunit [Acinetobacter baumannii 6014059] Length = 98 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|261855011|ref|YP_003262294.1| histone family protein DNA-binding protein [Halothiobacillus neapolitanus c2] gi|261835480|gb|ACX95247.1| histone family protein DNA-binding protein [Halothiobacillus neapolitanus c2] Length = 90 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ + G+ + +S + + D+ +G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIDAMAAKSGMKKTESAAALDAFIEAVGDALKKGDQVTLVGFGTFLVREREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + ++I R+ FKA LK + Sbjct: 61 RNPRSGETIEIAASRLPSFKAGKGLKDAVN 90 >gi|254469567|ref|ZP_05082972.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062] gi|211961402|gb|EEA96597.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F I ++ G+ ++I F F V + + G Sbjct: 1 MNKNDLIGAVAEKTGLTKAQAGEAVEASFEAITETLKSGDEVRIIGFGNFSVSARAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90 >gi|228476872|ref|ZP_04061517.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126] gi|322372800|ref|ZP_08047336.1| DNA-binding protein HU [Streptococcus sp. C150] gi|228251446|gb|EEK10591.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126] gi|321277842|gb|EFX54911.1| DNA-binding protein HU [Streptococcus sp. C150] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I +V FKA LK + Sbjct: 63 NPQTGEAISIAASKVPAFKAGKALKDAVK 91 >gi|258406020|ref|YP_003198762.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798247|gb|ACV69184.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++++ GL++ D+ R V + D+ V+ + ++ F TF V+++ +R G Sbjct: 1 MTKADLIGKVAEKSGLTKADAERAVNGFLESVEDTLVKEGKLTMTGFGTFSVEERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT QE+ I +VV F+ +LK + Sbjct: 61 RNPQTGQEITIPASKVVKFRPGKLLKDAVK 90 >gi|195977763|ref|YP_002123007.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868935|ref|YP_002744883.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus] gi|225870057|ref|YP_002746004.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047] gi|195974468|gb|ACG61994.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699461|emb|CAW92972.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047] gi|225702211|emb|CAW99942.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGEEIEIAASKVPAFKAGKALKDAVK 91 >gi|126726952|ref|ZP_01742791.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium HTCC2150] gi|126703910|gb|EBA03004.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium HTCC2150] Length = 100 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 45/99 (45%), Positives = 66/99 (66%), Gaps = 1/99 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL ++I E GLSR +S V ++ + D+ V GE +KISSF TF ++ K Sbjct: 1 MSEKTLTRVDLSEAIFNEVGLSRNESAALVQSVLQHMSDALVSGENVKISSFGTFSLRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN +T +EV I PRRV+ F+ S+++K R+ + Sbjct: 61 NARVGRNPKTGEEVPISPRRVLTFRPSNLMKDRVSGQSQ 99 >gi|190575245|ref|YP_001973090.1| integration host factor subunit alpha [Stenotrophomonas maltophilia K279a] gi|194366572|ref|YP_002029182.1| integration host factor subunit alpha [Stenotrophomonas maltophilia R551-3] gi|254522974|ref|ZP_05135029.1| integration host factor, alpha subunit [Stenotrophomonas sp. SKA14] gi|226709756|sp|B4SQG8|IHFA_STRM5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709757|sp|B2FN73|IHFA_STRMK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|190013167|emb|CAQ46800.1| putative Integration host factor alpha-subunit [Stenotrophomonas maltophilia K279a] gi|194349376|gb|ACF52499.1| integration host factor, alpha subunit [Stenotrophomonas maltophilia R551-3] gi|219720565|gb|EED39090.1| integration host factor, alpha subunit [Stenotrophomonas sp. SKA14] Length = 99 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 55/91 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + ++ +G +K+S F F +++K R Sbjct: 2 ALTKAEMAEKLFDEVGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92 >gi|242279078|ref|YP_002991207.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121972|gb|ACS79668.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ G+++ D+ R + + + ++ V + ++ F TF V ++ RVG Sbjct: 1 MTKAELVVKIAEKAGMTKADAERCLNYFLDTVEETLVNEGKLTLTGFGTFQVDERKERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +VV F+ +LK + Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKLLKDAVK 90 >gi|194337655|ref|YP_002019449.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310132|gb|ACF44832.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + L++ D+ R V N + DS G+ + + F TF V ++ R+G Sbjct: 1 MSKAELVEKIADQAKLTKVDAERAVNAFINVVIDSLKDGDDVTLVGFGTFAVGKRAERLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I + VV FK L+ I Sbjct: 61 RNPQTGEAITIAAKNVVKFKPGKALRDGI 89 >gi|90407417|ref|ZP_01215601.1| DNA-binding protein [Psychromonas sp. CNPT3] gi|90311448|gb|EAS39549.1| DNA-binding protein [Psychromonas sp. CNPT3] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +I++ +S+ ++R + + + + V G+ + + F F VK + +R G Sbjct: 1 MNKGQLIDNIAESADISKAAASRALDAFISSVTQALVEGDNVSLIGFGAFTVKDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I +V FKA LK I Sbjct: 61 RNPQTGAPIEIKAAKVPAFKAGKSLKDAIN 90 >gi|306841833|ref|ZP_07474515.1| DNA-binding protein HU [Brucella sp. BO2] gi|306843971|ref|ZP_07476566.1| DNA-binding protein HU [Brucella sp. BO1] gi|306275726|gb|EFM57450.1| DNA-binding protein HU [Brucella sp. BO1] gi|306288060|gb|EFM59457.1| DNA-binding protein HU [Brucella sp. BO2] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 1 MNKNELVAAVAEKGGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 61 RNPSTGKEVDIPARNVPKFSAGKGLKDAVNG 91 >gi|82701627|ref|YP_411193.1| integration host factor subunit alpha [Nitrosospira multiformis ATCC 25196] gi|123727231|sp|Q2YBS0|IHFA_NITMU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|82409692|gb|ABB73801.1| integration host factor, alpha subunit [Nitrosospira multiformis ATCC 25196] Length = 101 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 56/97 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ G +++++ V + + E+ + G+ +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +E+ I RRVV F AS LK + + G+ Sbjct: 62 GRNPKTGEEIPITARRVVTFHASQKLKAMVEKNQHGK 98 >gi|293392542|ref|ZP_06636862.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] gi|291424944|gb|EFE98153.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F +F V+++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTDSLKEGDDVALVGFGSFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V F+A LK + Sbjct: 61 RNPQTGKEIKIAAAKVPAFRAGKALKDAVN 90 >gi|113461674|ref|YP_719743.1| DNA-binding protein HU [Haemophilus somnus 129PT] gi|112823717|gb|ABI25806.1| DNA-binding protein HU [Haemophilus somnus 129PT] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S GEA+++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEAVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F A LK + Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALKDSVN 90 >gi|163801038|ref|ZP_02194938.1| integration host factor alpha subunit [Vibrio sp. AND4] gi|159175387|gb|EDP60184.1| integration host factor alpha subunit [Vibrio sp. AND4] Length = 98 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEDLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|90417317|ref|ZP_01225243.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2207] gi|90330902|gb|EAS46165.1| integration host factor, alpha subunit [marine gamma proteobacterium HTCC2207] Length = 99 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + +E GL+++++ V ++EI + +++K+S F F ++ K SR Sbjct: 3 ALTKADLAEMLFEELGLNKREAKEIVEMFYSEISLALENNDSVKLSGFGNFELRDKKSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV FK LK R+ + Sbjct: 63 GRNPKTGEEIPISARRVVTFKPGQKLKARVEN 94 >gi|56460501|ref|YP_155782.1| nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina loihiensis L2TR] gi|81678356|sp|Q5QXL9|IHFA_IDILO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|56179511|gb|AAV82233.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina loihiensis L2TR] Length = 98 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 54/93 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + ++G+S++D+ V F EI + RGE +K+S F F ++ K R Sbjct: 2 ALTKAELAEVLFDKYGVSKQDAKVLVEDFFEEIRVALERGEQVKLSGFGNFELRTKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV FK K R+ + Sbjct: 62 GRNPKTGEEIPISARRVVTFKPGQKFKSRVENA 94 >gi|26989194|ref|NP_744619.1| integration host factor subunit alpha [Pseudomonas putida KT2440] gi|148548427|ref|YP_001268529.1| integration host factor subunit alpha [Pseudomonas putida F1] gi|167034471|ref|YP_001669702.1| integration host factor subunit alpha [Pseudomonas putida GB-1] gi|170721157|ref|YP_001748845.1| integration host factor subunit alpha [Pseudomonas putida W619] gi|325276804|ref|ZP_08142506.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51] gi|60392431|sp|P0A126|IHFA_PSEPK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|60392432|sp|P0A127|IHFA_PSEPU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918517|sp|A5W5D5|IHFA_PSEP1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044704|sp|B0KKR2|IHFA_PSEPG RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709741|sp|B1J6V0|IHFA_PSEPW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|24984034|gb|AAN68083.1|AE016440_3 integration host factor, alpha subunit [Pseudomonas putida KT2440] gi|1435199|gb|AAB04060.1| IhfA [Pseudomonas putida] gi|148512485|gb|ABQ79345.1| integration host factor, alpha subunit [Pseudomonas putida F1] gi|166860959|gb|ABY99366.1| integration host factor, alpha subunit [Pseudomonas putida GB-1] gi|169759160|gb|ACA72476.1| integration host factor, alpha subunit [Pseudomonas putida W619] gi|324098064|gb|EGB96208.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51] Length = 100 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|325264325|ref|ZP_08131056.1| DNA-binding protein HU [Clostridium sp. D5] gi|324030396|gb|EGB91680.1| DNA-binding protein HU [Clostridium sp. D5] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ +S+KDS + + + + D +G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEKAEISKKDSEKALKAFIDVVSDQLKKGDKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + FKA LK + Sbjct: 61 RNPQTGKTMKIAACKAPKFKAGKALKDEVN 90 >gi|90021780|ref|YP_527607.1| hypothetical protein Sde_2135 [Saccharophagus degradans 2-40] gi|123396041|sp|Q21IT4|IHFB_SACD2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|89951380|gb|ABD81395.1| integration host factor, beta subunit [Saccharophagus degradans 2-40] Length = 98 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I++ LS KD V + + + GE I+I F +F + + R Sbjct: 1 MTKSELIERIAERQDQLSAKDIELAVKLVLEYMSQALSTGERIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T + V + + V FK ++ R+ + ++ Sbjct: 61 GRNPKTGESVTLPGKYVPHFKPGKEMRDRVNESIQSE 97 >gi|146319301|ref|YP_001199013.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33] gi|146321504|ref|YP_001201215.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33] gi|223932925|ref|ZP_03624920.1| histone family protein DNA-binding protein [Streptococcus suis 89/1591] gi|253752334|ref|YP_003025475.1| DNA-binding protein HU [Streptococcus suis SC84] gi|253754160|ref|YP_003027301.1| DNA-binding protein HU [Streptococcus suis P1/7] gi|253756094|ref|YP_003029234.1| DNA-binding protein HU [Streptococcus suis BM407] gi|330833271|ref|YP_004402096.1| nucleoid DNA-binding protein [Streptococcus suis ST3] gi|145690107|gb|ABP90613.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33] gi|145692310|gb|ABP92815.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33] gi|223898371|gb|EEF64737.1| histone family protein DNA-binding protein [Streptococcus suis 89/1591] gi|251816623|emb|CAZ52263.1| DNA-binding protein HU [Streptococcus suis SC84] gi|251818558|emb|CAZ56391.1| DNA-binding protein HU [Streptococcus suis BM407] gi|251820406|emb|CAR47035.1| DNA-binding protein HU [Streptococcus suis P1/7] gi|292558933|gb|ADE31934.1| Histone-like bacterial DNA-binding protein [Streptococcus suis GZ1] gi|329307494|gb|AEB81910.1| nucleoid DNA-binding protein [Streptococcus suis ST3] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FKA LK + Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >gi|110633525|ref|YP_673733.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1] gi|110284509|gb|ABG62568.1| bacterial nucleoid protein Hbs [Chelativorans sp. BNC1] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GLS+ D+ V +F+ I G +++ F F V ++ + G Sbjct: 1 MNKNELVSAVAEKAGLSKGDAQSAVDAVFSVITGELKSGGDVRLVGFGNFSVSRREASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT EVKI R V F A LK I Sbjct: 61 RNPQTGAEVKIPARNVPKFSAGKGLKDAIN 90 >gi|15641921|ref|NP_231553.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591617|ref|ZP_01678865.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80] gi|121727834|ref|ZP_01680901.1| DNA-binding protein HU-beta [Vibrio cholerae V52] gi|147673385|ref|YP_001217452.1| DNA-binding protein HU-beta [Vibrio cholerae O395] gi|153820106|ref|ZP_01972773.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457] gi|153823843|ref|ZP_01976510.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|153827659|ref|ZP_01980326.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2] gi|183179757|ref|ZP_02957968.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3] gi|227082049|ref|YP_002810600.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2] gi|229507985|ref|ZP_04397490.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286] gi|229511778|ref|ZP_04401257.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|229515305|ref|ZP_04404765.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21] gi|229518915|ref|ZP_04408358.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|229521841|ref|ZP_04411258.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80] gi|229523939|ref|ZP_04413344.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426] gi|229529055|ref|ZP_04418445.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)] gi|229607531|ref|YP_002878179.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236] gi|254286720|ref|ZP_04961674.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226] gi|254849007|ref|ZP_05238357.1| DNA-binding protein HU-beta [Vibrio cholerae MO10] gi|255745322|ref|ZP_05419271.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101] gi|258621305|ref|ZP_05716339.1| DNA-binding protein HU-beta [Vibrio mimicus VM573] gi|258625371|ref|ZP_05720268.1| DNA-binding protein HU-beta [Vibrio mimicus VM603] gi|262156046|ref|ZP_06029166.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1] gi|262166049|ref|ZP_06033786.1| DNA-binding protein HU-beta [Vibrio mimicus VM223] gi|262167881|ref|ZP_06035581.1| DNA-binding protein HU-beta [Vibrio cholerae RC27] gi|262171086|ref|ZP_06038764.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451] gi|262404272|ref|ZP_06080827.1| DNA-binding protein HU-beta [Vibrio sp. RC586] gi|297579437|ref|ZP_06941365.1| DNA-binding protein HU-beta [Vibrio cholerae RC385] gi|298498043|ref|ZP_07007850.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757] gi|14194651|sp|Q9KQS9|DBHB_VIBCH RecName: Full=DNA-binding protein HU-beta gi|9656454|gb|AAF95067.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546530|gb|EAX56738.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80] gi|121629870|gb|EAX62284.1| DNA-binding protein HU-beta [Vibrio cholerae V52] gi|126509348|gb|EAZ71942.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457] gi|126518640|gb|EAZ75863.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|146315268|gb|ABQ19807.1| DNA-binding protein HU-beta [Vibrio cholerae O395] gi|149737865|gb|EDM52770.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2] gi|150423147|gb|EDN15094.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226] gi|183013168|gb|EDT88468.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3] gi|227009937|gb|ACP06149.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2] gi|227013817|gb|ACP10027.1| DNA-binding protein HU-beta [Vibrio cholerae O395] gi|229332829|gb|EEN98315.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)] gi|229337520|gb|EEO02537.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426] gi|229340766|gb|EEO05771.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80] gi|229343604|gb|EEO08579.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|229348010|gb|EEO12969.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21] gi|229351743|gb|EEO16684.1| DNA-binding protein HU-beta [Vibrio cholerae B33] gi|229355490|gb|EEO20411.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286] gi|229370186|gb|ACQ60609.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236] gi|254844712|gb|EET23126.1| DNA-binding protein HU-beta [Vibrio cholerae MO10] gi|255737152|gb|EET92548.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101] gi|258582362|gb|EEW07214.1| DNA-binding protein HU-beta [Vibrio mimicus VM603] gi|258586693|gb|EEW11408.1| DNA-binding protein HU-beta [Vibrio mimicus VM573] gi|261892162|gb|EEY38148.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451] gi|262023608|gb|EEY42309.1| DNA-binding protein HU-beta [Vibrio cholerae RC27] gi|262025765|gb|EEY44433.1| DNA-binding protein HU-beta [Vibrio mimicus VM223] gi|262030224|gb|EEY48868.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1] gi|262349304|gb|EEY98442.1| DNA-binding protein HU-beta [Vibrio sp. RC586] gi|297537031|gb|EFH75864.1| DNA-binding protein HU-beta [Vibrio cholerae RC385] gi|297542376|gb|EFH78426.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757] gi|327484463|gb|AEA78870.1| DNA-binding protein HU-beta [Vibrio cholerae LMA3894-4] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 45/88 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVEQIAANADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E+KI +V FKA LK Sbjct: 61 RNPKTGEEIKIAEAKVPSFKAGKALKDA 88 >gi|171778666|ref|ZP_02919762.1| hypothetical protein STRINF_00614 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|306833010|ref|ZP_07466142.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338] gi|320546358|ref|ZP_08040675.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812] gi|171282623|gb|EDT48047.1| hypothetical protein STRINF_00614 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|304424909|gb|EFM28043.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338] gi|320449012|gb|EFW89738.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAVAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGEEIEIAASKVPAFKAGKALKDAVK 91 >gi|84387738|ref|ZP_00990754.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|86148519|ref|ZP_01066807.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|148977891|ref|ZP_01814444.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] gi|84377421|gb|EAP94288.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01] gi|85833710|gb|EAQ51880.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222] gi|145962837|gb|EDK28109.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium SWAT-3] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+SI++ +S+ + R + + + G+ + + F TF V+ + +R G Sbjct: 1 MNKTQLVESIAENADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I +V FKA LK Sbjct: 61 RNPKTGEEIQIAEAKVPGFKAGKALKDA 88 >gi|104781112|ref|YP_607610.1| integration host factor subunit alpha [Pseudomonas entomophila L48] gi|123079215|sp|Q1IC09|IHFA_PSEE4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|95110099|emb|CAK14804.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Pseudomonas entomophila L48] Length = 100 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|119356262|ref|YP_910906.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353611|gb|ABL64482.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 102 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 56/101 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGTTTTKADLVNVIAHRTGLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R RN +T ++V +DP+ V FK S K + + ++ + Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLKNGQ 101 >gi|313889131|ref|ZP_07822787.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844871|gb|EFR32276.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b] Length = 92 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++KD+ + + + + ++ GE +++ F TF V+Q+ +R G Sbjct: 1 MNKSELVASIAEKSGLTKKDAEQALNGFISSVQEALADGEKVQLVGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E +KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92 >gi|15837345|ref|NP_298033.1| integration host factor subunit alpha [Xylella fastidiosa 9a5c] gi|14194874|sp|Q9PFD5|IHFA_XYLFA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9105633|gb|AAF83553.1|AE003916_7 integration host factor, alpha subunit [Xylella fastidiosa 9a5c] Length = 99 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 60/98 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V+ + E GL+++++ FV T F+ + D+ +G IK+S F F ++ K R Sbjct: 2 ALTKAEMVERLFDEVGLNKREAKEFVDTFFDLLRDALEQGRQIKLSGFGNFELRCKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I R VV F++ LK+R+ + R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRSGQKLKERVDAYVGSRQ 99 >gi|197284918|ref|YP_002150790.1| integration host factor subunit alpha [Proteus mirabilis HI4320] gi|227355321|ref|ZP_03839722.1| integration host factor alpha-subunit [Proteus mirabilis ATCC 29906] gi|226709739|sp|B4ETL2|IHFA_PROMH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|194682405|emb|CAR42265.1| integration host factor alpha-subunit [Proteus mirabilis HI4320] gi|227164545|gb|EEI49416.1| integration host factor alpha-subunit [Proteus mirabilis ATCC 29906] Length = 98 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAENLFEKLGVSKRDAKDLVEAFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENATP 96 >gi|193213517|ref|YP_001999470.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] gi|193086994|gb|ACF12270.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ E G+++ ++ R V N + + G+ + + F TF + R G Sbjct: 1 MSKAELVEQIAAETGMTKAEAERAVNAFINVVTSTLKGGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK I Sbjct: 61 RNPQTGETITIAAKKVVKFKPGKALKDEI 89 >gi|121997401|ref|YP_001002188.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] gi|121588806|gb|ABM61386.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ LS+ + R V + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIEAVADSADLSKAAAARAVDAMVESVTDALREGDQVTLVGFGTFTVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I +V FK LK I Sbjct: 61 RNPRTGESIDIPASKVPGFKPGKALKDAIN 90 >gi|254501804|ref|ZP_05113955.1| integration host factor, beta subunit [Labrenzia alexandrii DFL-11] gi|222437875|gb|EEE44554.1| integration host factor, beta subunit [Labrenzia alexandrii DFL-11] Length = 99 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +EI ++ +RG+ +++ F F VK + +R+ Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T Q+V++D + V FK ++ R+ D + Sbjct: 61 GRNPRTGQKVEVDEKHVPFFKTGKEMRIRLNDGV 94 >gi|210613799|ref|ZP_03289913.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787] gi|210151008|gb|EEA82016.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +I+++ LS+KD+ + + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTEFISAIAEKAELSKKDAEKALKAFTDVVEEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI+ + FKA LK + Sbjct: 61 RNPQTGETMKIEACKAPKFKAGKALKDAVN 90 >gi|319786727|ref|YP_004146202.1| integration host factor subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317465239|gb|ADV26971.1| integration host factor, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 101 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ FV F+ + ++ G +K+S F F +++K R Sbjct: 2 ALTKAEMAERLFDEVGLNKREAKEFVDAFFDVLREALQDGRQVKLSGFGNFDLRRKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I R VV F+ LK+R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRPGQKLKERVE 92 >gi|261211051|ref|ZP_05925341.1| integration host factor alpha subunit [Vibrio sp. RC341] gi|262402428|ref|ZP_06078989.1| integration host factor alpha subunit [Vibrio sp. RC586] gi|260840026|gb|EEX66626.1| integration host factor alpha subunit [Vibrio sp. RC341] gi|262351210|gb|EEZ00343.1| integration host factor alpha subunit [Vibrio sp. RC586] Length = 98 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|237807858|ref|YP_002892298.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] gi|237500119|gb|ACQ92712.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] Length = 90 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV IS+ +S+ + R + + ++ G+ + + F TF V+++ SR G Sbjct: 1 MNKSQLVDKISESADISKAAAGRALDAFIEAVGEALKDGDQVSLVGFGTFAVRERASRSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I + FKA LK + Sbjct: 61 RNPQTGATIEIAACKQPAFKAGKALKDSVN 90 >gi|114563759|ref|YP_751272.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] gi|114335052|gb|ABI72434.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 91 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90 >gi|17987160|ref|NP_539794.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 1 str. 16M] gi|225627579|ref|ZP_03785616.1| DNA-binding protein HRL18 [Brucella ceti str. Cudo] gi|237815529|ref|ZP_04594526.1| DNA-binding protein HRL18 [Brucella abortus str. 2308 A] gi|294852445|ref|ZP_06793118.1| DNA-binding protein HU-beta [Brucella sp. NVSL 07-0026] gi|17982826|gb|AAL52058.1| DNA-binding protein hu-alpha [Brucella melitensis bv. 1 str. 16M] gi|225617584|gb|EEH14629.1| DNA-binding protein HRL18 [Brucella ceti str. Cudo] gi|237788827|gb|EEP63038.1| DNA-binding protein HRL18 [Brucella abortus str. 2308 A] gi|294821034|gb|EFG38033.1| DNA-binding protein HU-beta [Brucella sp. NVSL 07-0026] Length = 93 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 3 MNKNELVAAVAEKGGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 63 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 93 >gi|300721988|ref|YP_003711268.1| DNA-binding protein HU-beta, NS1 [Xenorhabdus nematophila ATCC 19061] gi|297628485|emb|CBJ89050.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Xenorhabdus nematophila ATCC 19061] Length = 96 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ + +S+ + R V + + ++ G+ + + F TF V+++ +R G Sbjct: 6 VNKSQLIDKIAADVNISKAAAGRVVDAFISSVSEALKDGDDVALVGFGTFSVRERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V F++ LK + Sbjct: 66 RNPQTGKEIKIAAAKVPAFRSGKGLKDAVN 95 >gi|295398577|ref|ZP_06808609.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563] gi|294973178|gb|EFG48973.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563] Length = 106 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV++++ G S+K V +F +I GE +++ F +F V+ + +R GR Sbjct: 18 NKAELVQNVANAVGDSKKSVAPVVDAVFEQIEAFLADGEKVQLIGFGSFEVRDRAARKGR 77 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK + Sbjct: 78 NPQTGDEIEIPASKVPAFKPGKALKDAVK 106 >gi|28199777|ref|NP_780091.1| integration host factor subunit alpha [Xylella fastidiosa Temecula1] gi|71275161|ref|ZP_00651448.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon] gi|71898242|ref|ZP_00680416.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|71901128|ref|ZP_00683234.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|170731152|ref|YP_001776585.1| integration host factor subunit alpha [Xylella fastidiosa M12] gi|182682527|ref|YP_001830687.1| integration host factor subunit alpha [Xylella fastidiosa M23] gi|32129614|sp|Q87AB7|IHFA_XYLFT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709761|sp|B2I9P2|IHFA_XYLF2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709762|sp|B0U5D7|IHFA_XYLFM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|28057898|gb|AAO29740.1| integration host factor, alpha subunit [Xylella fastidiosa Temecula1] gi|71163970|gb|EAO13685.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon] gi|71729092|gb|EAO31217.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|71731981|gb|EAO34038.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1] gi|167965945|gb|ACA12955.1| integration host factor, alpha subunit [Xylella fastidiosa M12] gi|182632637|gb|ACB93413.1| integration host factor, alpha subunit [Xylella fastidiosa M23] gi|307578805|gb|ADN62774.1| integration host factor subunit alpha [Xylella fastidiosa subsp. fastidiosa GB514] Length = 99 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 60/98 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V+ + E GL+++++ FV F+ + D+ +G+ IK+S F F ++ K R Sbjct: 2 ALTKAEMVERLFDEVGLNKREAKEFVDAFFDLLRDALEQGKEIKLSGFGNFELRCKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I R VV F++ LK+R+ + R+ Sbjct: 62 GRNPKTGEEIPISARTVVTFRSGQKLKERVDAYVGSRQ 99 >gi|71276514|ref|ZP_00652789.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Dixon] gi|71901996|ref|ZP_00684043.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|170729735|ref|YP_001775168.1| histone-like protein [Xylella fastidiosa M12] gi|71162691|gb|EAO12418.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Dixon] gi|71728241|gb|EAO30425.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|167964528|gb|ACA11538.1| histone-like protein [Xylella fastidiosa M12] Length = 94 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ +G+++ + F TF V+ + R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN ++ + + I FK LK + Sbjct: 61 RNPKSGEPIMIAASNNPSFKPGKALKDAVKSS 92 >gi|229106597|ref|ZP_04236839.1| DNA-binding protein HU [Bacillus cereus Rock3-28] gi|228676835|gb|EEL31439.1| DNA-binding protein HU [Bacillus cereus Rock3-28] Length = 93 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 53/92 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L+K ++ + L++KD+ + + I ++ E ++I F TF V+++ +R Sbjct: 2 QKMNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEIQIAASKAPAFKAGKELKEAVK 93 >gi|114568651|ref|YP_755331.1| integration host factor subunit beta [Maricaulis maris MCS10] gi|122317015|sp|Q0ATJ4|IHFB_MARMM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114339113|gb|ABI64393.1| integration host factor, beta subunit [Maricaulis maris MCS10] Length = 101 Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ +++ L +D R V T+ + I D+ RGE +++ F F V+ + +RV Sbjct: 1 MIKSELIDQLAEANPHLYHRDVERVVNTILDGITDALARGERVELRGFGAFSVRHRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPRTGESVAVKEKHVPFFKTGKELRERVDASRESNP 98 >gi|262369831|ref|ZP_06063158.1| integration host factor alpha subunit [Acinetobacter johnsonii SH046] gi|262314870|gb|EEY95910.1| integration host factor alpha subunit [Acinetobacter johnsonii SH046] Length = 98 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|167855819|ref|ZP_02478571.1| DNA-binding protein HU [Haemophilus parasuis 29755] gi|219871002|ref|YP_002475377.1| DNA-binding protein HU/transcriptional regulator [Haemophilus parasuis SH0165] gi|167853032|gb|EDS24294.1| DNA-binding protein HU [Haemophilus parasuis 29755] gi|219691206|gb|ACL32429.1| DNA-binding protein HU/transcriptional regulator [Haemophilus parasuis SH0165] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ LS+KD+ + N I +S +G+++++ F TF V + +R G Sbjct: 1 MNKTELVDAIAAGADLSKKDAKAALEATLNAISESLKKGDSVQLIGFGTFKVNHRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+ ++I V F A LK + Sbjct: 61 RNPKTNEAIEIPAANVPAFVAGKALKDLVK 90 >gi|167032913|ref|YP_001668144.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] gi|166859401|gb|ABY97808.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + +G+ + + F TF VK + R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI+ +V FKA LK + Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAVN 90 >gi|256005929|ref|ZP_05430873.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281416578|ref|ZP_06247598.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|255990100|gb|EEU00238.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 2360] gi|281407980|gb|EFB38238.1| histone family protein DNA-binding protein [Clostridium thermocellum JW20] gi|316939684|gb|ADU73718.1| histone family protein DNA-binding protein [Clostridium thermocellum DSM 1313] Length = 91 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ SI+ + GLS+K+S + + ++ +G+ + + F TF VK + +R G Sbjct: 1 MNKTELINSIASKSGLSKKNSEAALNAFIASVEEALKKGDKVVLVGFGTFEVKNRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + VFKA LK + Sbjct: 61 RNPQTKEEITIPASKAPVFKAGKGLKDIVNK 91 >gi|28869581|ref|NP_792200.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|66045408|ref|YP_235249.1| integration host factor subunit alpha [Pseudomonas syringae pv. syringae B728a] gi|70729487|ref|YP_259225.1| integration host factor subunit alpha [Pseudomonas fluorescens Pf-5] gi|71737728|ref|YP_274360.1| integration host factor subunit alpha [Pseudomonas syringae pv. phaseolicola 1448A] gi|77458164|ref|YP_347669.1| integration host factor subunit alpha [Pseudomonas fluorescens Pf0-1] gi|213970489|ref|ZP_03398616.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato T1] gi|229591573|ref|YP_002873692.1| integration host factor subunit alpha [Pseudomonas fluorescens SBW25] gi|237801009|ref|ZP_04589470.1| integration host factor subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|257486166|ref|ZP_05640207.1| integration host factor subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623630|ref|ZP_06456584.1| integration host factor subunit alpha [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647152|ref|ZP_06478495.1| integration host factor subunit alpha [Pseudomonas syringae pv. aesculi str. 2250] gi|289673310|ref|ZP_06494200.1| integration host factor subunit alpha [Pseudomonas syringae pv. syringae FF5] gi|298486707|ref|ZP_07004764.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385321|ref|ZP_07233739.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato Max13] gi|302062680|ref|ZP_07254221.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato K40] gi|302132637|ref|ZP_07258627.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187619|ref|ZP_07264292.1| integration host factor subunit alpha [Pseudomonas syringae pv. syringae 642] gi|312961937|ref|ZP_07776434.1| integration host factor, alpha subunit [Pseudomonas fluorescens WH6] gi|38372323|sp|Q883H6|IHFA_PSESM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81308305|sp|Q4ZUG1|IHFA_PSEU2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123605197|sp|Q3KEX6|IHFA_PSEPF RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123747651|sp|Q48JR7|IHFA_PSE14 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123748498|sp|Q4KEV8|IHFA_PSEF5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|259491533|sp|C3JZN1|IHFA_PSEFS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|28852823|gb|AAO55895.1| integration host factor, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|63256115|gb|AAY37211.1| Integration host factor, alpha subunit [Pseudomonas syringae pv. syringae B728a] gi|68343786|gb|AAY91392.1| integration host factor, alpha subunit [Pseudomonas fluorescens Pf-5] gi|71558281|gb|AAZ37492.1| integration host factor, alpha subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|77382167|gb|ABA73680.1| integration host factor alpha-subunit [Pseudomonas fluorescens Pf0-1] gi|213924660|gb|EEB58228.1| integration host factor subunit alpha [Pseudomonas syringae pv. tomato T1] gi|229363439|emb|CAY50633.1| integration host factor alpha-subunit [Pseudomonas fluorescens SBW25] gi|298158790|gb|EFH99853.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|311283747|gb|EFQ62331.1| integration host factor, alpha subunit [Pseudomonas fluorescens WH6] gi|320324308|gb|EFW80387.1| integration host factor subunit alpha [Pseudomonas syringae pv. glycinea str. B076] gi|320328570|gb|EFW84572.1| integration host factor subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330867701|gb|EGH02410.1| integration host factor subunit alpha [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876795|gb|EGH10944.1| integration host factor subunit alpha [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330885570|gb|EGH19719.1| integration host factor subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330888323|gb|EGH20984.1| integration host factor subunit alpha [Pseudomonas syringae pv. mori str. 301020] gi|330898072|gb|EGH29491.1| integration host factor subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943383|gb|EGH45746.1| integration host factor subunit alpha [Pseudomonas syringae pv. pisi str. 1704B] gi|330951872|gb|EGH52132.1| integration host factor subunit alpha [Pseudomonas syringae Cit 7] gi|330958893|gb|EGH59153.1| integration host factor subunit alpha [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967292|gb|EGH67552.1| integration host factor subunit alpha [Pseudomonas syringae pv. actinidiae str. M302091] gi|330973946|gb|EGH74012.1| integration host factor subunit alpha [Pseudomonas syringae pv. aceris str. M302273PT] gi|330977715|gb|EGH77618.1| integration host factor subunit alpha [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330989235|gb|EGH87338.1| integration host factor subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010496|gb|EGH90552.1| integration host factor subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331016133|gb|EGH96189.1| integration host factor subunit alpha [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331023866|gb|EGI03923.1| integration host factor subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 100 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|18311461|ref|NP_563395.1| DNA-binding protein HU [Clostridium perfringens str. 13] gi|110801137|ref|YP_697167.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124] gi|110803022|ref|YP_699735.1| DNA-binding protein HU [Clostridium perfringens SM101] gi|168213403|ref|ZP_02639028.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969] gi|168217596|ref|ZP_02643221.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239] gi|169343310|ref|ZP_02864320.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495] gi|18146145|dbj|BAB82185.1| probable DNA binding protein [Clostridium perfringens str. 13] gi|110675784|gb|ABG84771.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124] gi|110683523|gb|ABG86893.1| DNA-binding protein HU [Clostridium perfringens SM101] gi|169298608|gb|EDS80689.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495] gi|170715074|gb|EDT27256.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969] gi|182380308|gb|EDT77787.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239] Length = 91 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ G+ +++ F TF + + R G Sbjct: 1 MNKAELITSMAEKSNLTKKDAELALKAFIESVSETLENGDKVQLVGFGTFETRVRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI VFK LK+R+ Sbjct: 61 RNPRTKEVIKIPASIAPVFKPGKELKERVN 90 >gi|328545805|ref|YP_004305914.1| integration host factor subunit beta [polymorphum gilvum SL003B-26A1] gi|326415545|gb|ADZ72608.1| Integration host factor subunit beta [Polymorphum gilvum SL003B-26A1] Length = 101 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +EI ++ +RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQRIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T Q+V +D + V FK +++R+ + Sbjct: 61 GRNPRTGQKVDVDEKYVPFFKTGKEMRERLNGGV 94 >gi|239831863|ref|ZP_04680192.1| DNA-binding protein HRL18 [Ochrobactrum intermedium LMG 3301] gi|239824130|gb|EEQ95698.1| DNA-binding protein HRL18 [Ochrobactrum intermedium LMG 3301] Length = 93 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 3 MNKNELVAAVAEKGGLTKADAGTAVDAVLAAVTGALKAGEEVRLPGFGVFSVSHRAASTG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 63 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 93 >gi|197302366|ref|ZP_03167423.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC 29176] gi|197298545|gb|EDY33088.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC 29176] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ +S+KDS + + + + + G+ +++ F TF V ++ +R G Sbjct: 1 MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVAEQLKAGDKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I + FKA LK I Sbjct: 61 RNPQTGETMTIAACKAPKFKAGKALKDAIN 90 >gi|15800170|ref|NP_286182.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 EDL933] gi|15829748|ref|NP_308521.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16128425|ref|NP_414974.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|24111824|ref|NP_706334.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a str. 301] gi|26246451|ref|NP_752490.1| transcriptional regulator HU subunit beta [Escherichia coli CFT073] gi|30061942|ref|NP_836113.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a str. 2457T] gi|74311015|ref|YP_309434.1| transcriptional regulator HU subunit beta [Shigella sonnei Ss046] gi|82542928|ref|YP_406875.1| transcriptional regulator HU subunit beta [Shigella boydii Sb227] gi|82775653|ref|YP_402000.1| transcriptional regulator HU subunit beta [Shigella dysenteriae Sd197] gi|89107310|ref|AP_001090.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|91209514|ref|YP_539500.1| transcriptional regulator HU subunit beta [Escherichia coli UTI89] gi|110640701|ref|YP_668429.1| transcriptional regulator HU subunit beta [Escherichia coli 536] gi|110804468|ref|YP_687988.1| transcriptional regulator HU subunit beta [Shigella flexneri 5 str. 8401] gi|117622700|ref|YP_851613.1| transcriptional regulator HU subunit beta [Escherichia coli APEC O1] gi|157158595|ref|YP_001461627.1| transcriptional regulator HU subunit beta [Escherichia coli E24377A] gi|157159967|ref|YP_001457285.1| transcriptional regulator HU subunit beta [Escherichia coli HS] gi|168747884|ref|ZP_02772906.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4113] gi|168754545|ref|ZP_02779552.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4401] gi|168760405|ref|ZP_02785412.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4501] gi|168768395|ref|ZP_02793402.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4486] gi|168777136|ref|ZP_02802143.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4196] gi|168778933|ref|ZP_02803940.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4076] gi|168786291|ref|ZP_02811298.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869] gi|168798004|ref|ZP_02823011.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508] gi|170021187|ref|YP_001726141.1| transcriptional regulator HU subunit beta [Escherichia coli ATCC 8739] gi|170080026|ref|YP_001729346.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170681712|ref|YP_001742584.1| transcriptional regulator HU subunit beta [Escherichia coli SMS-3-5] gi|170767837|ref|ZP_02902290.1| DNA-binding protein HU-beta [Escherichia albertii TW07627] gi|187732111|ref|YP_001879151.1| transcriptional regulator HU subunit beta [Shigella boydii CDC 3083-94] gi|188494441|ref|ZP_03001711.1| DNA-binding protein HU-beta [Escherichia coli 53638] gi|191169609|ref|ZP_03031324.1| DNA-binding protein HU-beta [Escherichia coli B7A] gi|191173656|ref|ZP_03035180.1| DNA-binding protein HU-beta [Escherichia coli F11] gi|193064118|ref|ZP_03045202.1| DNA-binding protein HU-beta [Escherichia coli E22] gi|193067526|ref|ZP_03048493.1| DNA-binding protein HU-beta [Escherichia coli E110019] gi|194429030|ref|ZP_03061562.1| DNA-binding protein HU-beta [Escherichia coli B171] gi|194435314|ref|ZP_03067526.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012] gi|194437413|ref|ZP_03069510.1| DNA-binding protein HU-beta [Escherichia coli 101-1] gi|208807585|ref|ZP_03249922.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4206] gi|208815532|ref|ZP_03256711.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4045] gi|208823271|ref|ZP_03263589.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4042] gi|209399224|ref|YP_002269087.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4115] gi|209917657|ref|YP_002291741.1| transcriptional regulator HU subunit beta [Escherichia coli SE11] gi|215485521|ref|YP_002327952.1| transcriptional regulator HU subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|217324840|ref|ZP_03440924.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. TW14588] gi|218549892|ref|YP_002383683.1| transcriptional regulator HU subunit beta [Escherichia fergusonii ATCC 35469] gi|218553007|ref|YP_002385920.1| transcriptional regulator HU subunit beta [Escherichia coli IAI1] gi|218557350|ref|YP_002390263.1| transcriptional regulator HU subunit beta [Escherichia coli S88] gi|218688304|ref|YP_002396516.1| transcriptional regulator HU subunit beta [Escherichia coli ED1a] gi|218693903|ref|YP_002401570.1| transcriptional regulator HU subunit beta [Escherichia coli 55989] gi|218698648|ref|YP_002406277.1| transcriptional regulator HU subunit beta [Escherichia coli IAI39] gi|218703724|ref|YP_002411243.1| transcriptional regulator HU subunit beta [Escherichia coli UMN026] gi|227884549|ref|ZP_04002354.1| DNA-binding protein HU [Escherichia coli 83972] gi|237707565|ref|ZP_04538046.1| transcriptional regulator HU subunit beta [Escherichia sp. 3_2_53FAA] gi|238899728|ref|YP_002925524.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli BW2952] gi|253774569|ref|YP_003037400.1| transcriptional regulator HU subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160510|ref|YP_003043618.1| transcriptional regulator HU subunit beta [Escherichia coli B str. REL606] gi|254791624|ref|YP_003076461.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256020412|ref|ZP_05434277.1| transcriptional regulator HU subunit beta [Shigella sp. D9] gi|256023941|ref|ZP_05437806.1| transcriptional regulator HU subunit beta [Escherichia sp. 4_1_40B] gi|260842641|ref|YP_003220419.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260853663|ref|YP_003227554.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260866601|ref|YP_003233003.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O111:H- str. 11128] gi|261223923|ref|ZP_05938204.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. FRIK2000] gi|261256363|ref|ZP_05948896.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. FRIK966] gi|291281347|ref|YP_003498165.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615] gi|293403561|ref|ZP_06647652.1| transcriptional regulator HU subunit alpha [Escherichia coli FVEC1412] gi|293408590|ref|ZP_06652429.1| conserved hypothetical protein [Escherichia coli B354] gi|293413695|ref|ZP_06656344.1| DNA-binding protein HU-beta [Escherichia coli B185] gi|293418511|ref|ZP_06660946.1| transcriptional regulator HU subunit alpha [Escherichia coli B088] gi|298379173|ref|ZP_06989054.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302] gi|300818228|ref|ZP_07098439.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300820314|ref|ZP_07100466.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300900511|ref|ZP_07118678.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300903292|ref|ZP_07121220.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300918177|ref|ZP_07134784.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300924167|ref|ZP_07140159.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300930257|ref|ZP_07145670.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300937057|ref|ZP_07151923.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300947907|ref|ZP_07162055.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300958008|ref|ZP_07170172.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300988005|ref|ZP_07178485.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300997371|ref|ZP_07181711.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|301022566|ref|ZP_07186438.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|301025664|ref|ZP_07189182.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|301049647|ref|ZP_07196596.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|301301591|ref|ZP_07207726.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|301330693|ref|ZP_07223295.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301647366|ref|ZP_07247178.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|306813092|ref|ZP_07447285.1| transcriptional regulator HU subunit beta [Escherichia coli NC101] gi|307137085|ref|ZP_07496441.1| transcriptional regulator HU subunit beta [Escherichia coli H736] gi|307312182|ref|ZP_07591818.1| histone family protein DNA-binding protein [Escherichia coli W] gi|309794827|ref|ZP_07689248.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|312964535|ref|ZP_07778791.1| DNA-binding protein HU-beta [Escherichia coli 2362-75] gi|312970537|ref|ZP_07784718.1| DNA-binding protein HU-beta [Escherichia coli 1827-70] gi|331640960|ref|ZP_08342095.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736] gi|331645616|ref|ZP_08346720.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605] gi|331651378|ref|ZP_08352403.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718] gi|331656497|ref|ZP_08357459.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206] gi|331661821|ref|ZP_08362744.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143] gi|331666796|ref|ZP_08367670.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271] gi|331676112|ref|ZP_08376824.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591] gi|331681835|ref|ZP_08382468.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299] gi|332281591|ref|ZP_08394004.1| transcriptional regulator HU subunit beta [Shigella sp. D9] gi|82581654|sp|P0ACF6|DBHB_ECO57 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|82581655|sp|P0ACF5|DBHB_ECOL6 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|82581656|sp|P0ACF4|DBHB_ECOLI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|82581657|sp|P0ACF7|DBHB_SHIFL RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|134105079|pdb|2O97|B Chain B, Crystal Structure Of E. Coli Hu Heterodimer gi|12513302|gb|AAG54790.1|AE005223_5 DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli O157:H7 str. EDL933] gi|26106849|gb|AAN79034.1|AE016756_217 DNA-binding protein HU-beta [Escherichia coli CFT073] gi|581106|emb|CAA34539.1| unnamed protein product [Escherichia coli K-12] gi|1773124|gb|AAB40196.1| DNA-binding protein NS1 [Escherichia coli] gi|1786644|gb|AAC73543.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13359951|dbj|BAB33917.1| DNA-binding protein HU-1 [Escherichia coli O157:H7 str. Sakai] gi|24050616|gb|AAN42041.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a str. 301] gi|30040186|gb|AAP15919.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a str. 2457T] gi|73854492|gb|AAZ87199.1| DNA-binding protein HU-beta [Shigella sonnei Ss046] gi|81239801|gb|ABB60511.1| DNA-binding protein HU-beta [Shigella dysenteriae Sd197] gi|81244339|gb|ABB65047.1| DNA-binding protein HU-beta [Shigella boydii Sb227] gi|85674580|dbj|BAE76220.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K12 substr. W3110] gi|91071088|gb|ABE05969.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli UTI89] gi|110342293|gb|ABG68530.1| DNA-binding protein HU-beta [Escherichia coli 536] gi|110614016|gb|ABF02683.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 5 str. 8401] gi|115511824|gb|ABI99898.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli APEC O1] gi|157065647|gb|ABV04902.1| DNA-binding protein HU-beta [Escherichia coli HS] gi|157080625|gb|ABV20333.1| DNA-binding protein HU-beta [Escherichia coli E24377A] gi|169756115|gb|ACA78814.1| histone family protein DNA-binding protein [Escherichia coli ATCC 8739] gi|169887861|gb|ACB01568.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170123325|gb|EDS92256.1| DNA-binding protein HU-beta [Escherichia albertii TW07627] gi|170519430|gb|ACB17608.1| DNA-binding protein HU-beta [Escherichia coli SMS-3-5] gi|187429103|gb|ACD08377.1| DNA-binding protein HU-beta [Shigella boydii CDC 3083-94] gi|187767567|gb|EDU31411.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4196] gi|188017725|gb|EDU55847.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4113] gi|188489640|gb|EDU64743.1| DNA-binding protein HU-beta [Escherichia coli 53638] gi|189002751|gb|EDU71737.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4076] gi|189357994|gb|EDU76413.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4401] gi|189362520|gb|EDU80939.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4486] gi|189369140|gb|EDU87556.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4501] gi|189373754|gb|EDU92170.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869] gi|189379306|gb|EDU97722.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508] gi|190900350|gb|EDV60184.1| DNA-binding protein HU-beta [Escherichia coli B7A] gi|190906014|gb|EDV65629.1| DNA-binding protein HU-beta [Escherichia coli F11] gi|192929147|gb|EDV82757.1| DNA-binding protein HU-beta [Escherichia coli E22] gi|192958938|gb|EDV89374.1| DNA-binding protein HU-beta [Escherichia coli E110019] gi|194412967|gb|EDX29257.1| DNA-binding protein HU-beta [Escherichia coli B171] gi|194416446|gb|EDX32603.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012] gi|194423582|gb|EDX39572.1| DNA-binding protein HU-beta [Escherichia coli 101-1] gi|208727386|gb|EDZ76987.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4206] gi|208732180|gb|EDZ80868.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4045] gi|208737464|gb|EDZ85148.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4042] gi|209160624|gb|ACI38057.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC4115] gi|209743824|gb|ACI70219.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743826|gb|ACI70220.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743828|gb|ACI70221.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743830|gb|ACI70222.1| DNA-binding protein HU-1 [Escherichia coli] gi|209743832|gb|ACI70223.1| DNA-binding protein HU-1 [Escherichia coli] gi|209910916|dbj|BAG75990.1| DNA-binding protein HU-beta [Escherichia coli SE11] gi|215263593|emb|CAS07923.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321061|gb|EEC29485.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. TW14588] gi|218350635|emb|CAU96327.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli 55989] gi|218357433|emb|CAQ90072.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia fergusonii ATCC 35469] gi|218359775|emb|CAQ97316.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli IAI1] gi|218364119|emb|CAR01784.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli S88] gi|218368634|emb|CAR16373.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli IAI39] gi|218425868|emb|CAR06674.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli ED1a] gi|218430821|emb|CAR11695.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli UMN026] gi|222032235|emb|CAP74974.1| DNA-binding protein HU-beta [Escherichia coli LF82] gi|226898775|gb|EEH85034.1| transcriptional regulator HU subunit beta [Escherichia sp. 3_2_53FAA] gi|227838635|gb|EEJ49101.1| DNA-binding protein HU [Escherichia coli 83972] gi|238861438|gb|ACR63436.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli BW2952] gi|242376222|emb|CAQ30913.1| transcriptional dual regulator HU-beta, NS1 (HU-1), subunit of HU transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325613|gb|ACT30215.1| histone family protein DNA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972411|gb|ACT38082.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli B str. REL606] gi|253976621|gb|ACT42291.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli BL21(DE3)] gi|254591024|gb|ACT70385.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257752312|dbj|BAI23814.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257757788|dbj|BAI29285.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257762957|dbj|BAI34452.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli O111:H- str. 11128] gi|260450373|gb|ACX40795.1| histone family protein DNA-binding protein [Escherichia coli DH1] gi|281177611|dbj|BAI53941.1| DNA-binding protein HU-beta [Escherichia coli SE15] gi|281599780|gb|ADA72764.1| DNA-binding protein HU-beta [Shigella flexneri 2002017] gi|284920250|emb|CBG33309.1| DNA-binding protein HU-beta [Escherichia coli 042] gi|290761220|gb|ADD55181.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615] gi|291325039|gb|EFE64454.1| transcriptional regulator HU subunit alpha [Escherichia coli B088] gi|291429414|gb|EFF02434.1| transcriptional regulator HU subunit alpha [Escherichia coli FVEC1412] gi|291433753|gb|EFF06726.1| DNA-binding protein HU-beta [Escherichia coli B185] gi|291471768|gb|EFF14251.1| conserved hypothetical protein [Escherichia coli B354] gi|294489973|gb|ADE88729.1| DNA-binding protein HU-beta [Escherichia coli IHE3034] gi|298280286|gb|EFI21790.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302] gi|299880018|gb|EFI88229.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|300298584|gb|EFJ54969.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|300304190|gb|EFJ58710.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|300315275|gb|EFJ65059.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300355992|gb|EFJ71862.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300397447|gb|EFJ80985.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|300404587|gb|EFJ88125.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300407557|gb|EFJ91095.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300414628|gb|EFJ97938.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300419620|gb|EFK02931.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300452507|gb|EFK16127.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300457888|gb|EFK21381.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300461829|gb|EFK25322.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300527099|gb|EFK48168.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300529119|gb|EFK50181.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300843088|gb|EFK70848.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|300843354|gb|EFK71114.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301074511|gb|EFK89317.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|305853855|gb|EFM54294.1| transcriptional regulator HU subunit beta [Escherichia coli NC101] gi|306907684|gb|EFN38186.1| histone family protein DNA-binding protein [Escherichia coli W] gi|307552347|gb|ADN45122.1| DNA-binding protein HU [Escherichia coli ABU 83972] gi|307628090|gb|ADN72394.1| transcriptional regulator HU subunit beta [Escherichia coli UM146] gi|308121480|gb|EFO58742.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|309700701|emb|CBI99997.1| DNA-binding protein HU-beta [Escherichia coli ETEC H10407] gi|310337186|gb|EFQ02324.1| DNA-binding protein HU-beta [Escherichia coli 1827-70] gi|312290769|gb|EFR18646.1| DNA-binding protein HU-beta [Escherichia coli 2362-75] gi|312945018|gb|ADR25845.1| transcriptional regulator HU subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313646933|gb|EFS11390.1| DNA-binding protein HU-beta [Shigella flexneri 2a str. 2457T] gi|315059720|gb|ADT74047.1| HU, DNA-binding transcriptional regulator, beta subunit [Escherichia coli W] gi|315135122|dbj|BAJ42281.1| DNA-binding protein HU-beta [Escherichia coli DH1] gi|315256268|gb|EFU36236.1| DNA-binding protein HU [Escherichia coli MS 85-1] gi|315289842|gb|EFU49232.1| DNA-binding protein HU [Escherichia coli MS 110-3] gi|315294226|gb|EFU53577.1| DNA-binding protein HU [Escherichia coli MS 153-1] gi|315299564|gb|EFU58812.1| DNA-binding protein HU [Escherichia coli MS 16-3] gi|315616619|gb|EFU97236.1| DNA-binding protein HU-beta [Escherichia coli 3431] gi|320173740|gb|EFW48923.1| DNA-binding protein HU-beta [Shigella dysenteriae CDC 74-1112] gi|320178278|gb|EFW53252.1| DNA-binding protein HU-beta [Shigella boydii ATCC 9905] gi|320186070|gb|EFW60815.1| DNA-binding protein HU-beta [Shigella flexneri CDC 796-83] gi|320192856|gb|EFW67496.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC1212] gi|320197086|gb|EFW71705.1| DNA-binding protein HU-beta [Escherichia coli WV_060327] gi|320201684|gb|EFW76260.1| DNA-binding protein HU-beta [Escherichia coli EC4100B] gi|320638435|gb|EFX08149.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. G5101] gi|320643816|gb|EFX12939.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H- str. 493-89] gi|320649167|gb|EFX17745.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H- str. H 2687] gi|320656060|gb|EFX23976.1| transcriptional regulator HU subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661210|gb|EFX28641.1| transcriptional regulator HU subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320665186|gb|EFX32279.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323153477|gb|EFZ39731.1| DNA-binding protein HU-beta [Escherichia coli EPECa14] gi|323160449|gb|EFZ46397.1| DNA-binding protein HU-beta [Escherichia coli E128010] gi|323164241|gb|EFZ50048.1| DNA-binding protein HU-beta [Shigella sonnei 53G] gi|323170527|gb|EFZ56177.1| DNA-binding protein HU-beta [Escherichia coli LT-68] gi|323178291|gb|EFZ63869.1| DNA-binding protein HU-beta [Escherichia coli 1180] gi|323184729|gb|EFZ70100.1| DNA-binding protein HU-beta [Escherichia coli 1357] gi|323191360|gb|EFZ76623.1| DNA-binding protein HU-beta [Escherichia coli RN587/1] gi|323379715|gb|ADX51983.1| histone family protein DNA-binding protein [Escherichia coli KO11] gi|323938626|gb|EGB34875.1| bacterial DNA-binding protein [Escherichia coli E1520] gi|323943247|gb|EGB39403.1| DNA-binding protein [Escherichia coli E482] gi|323945346|gb|EGB41402.1| bacterial DNA-binding protein [Escherichia coli H120] gi|323952948|gb|EGB48816.1| DNA-binding protein [Escherichia coli H252] gi|323958633|gb|EGB54336.1| DNA-binding protein [Escherichia coli H263] gi|323963430|gb|EGB58992.1| DNA-binding protein [Escherichia coli H489] gi|323965127|gb|EGB60586.1| DNA-binding protein [Escherichia coli M863] gi|323972294|gb|EGB67504.1| DNA-binding protein [Escherichia coli TA007] gi|323976075|gb|EGB71168.1| DNA-binding protein [Escherichia coli TW10509] gi|324010071|gb|EGB79290.1| DNA-binding protein HU [Escherichia coli MS 57-2] gi|324010654|gb|EGB79873.1| DNA-binding protein HU [Escherichia coli MS 60-1] gi|324016699|gb|EGB85918.1| DNA-binding protein HU [Escherichia coli MS 117-3] gi|324114667|gb|EGC08635.1| DNA-binding protein [Escherichia fergusonii B253] gi|324116928|gb|EGC10841.1| DNA-binding protein [Escherichia coli E1167] gi|325498269|gb|EGC96128.1| transcriptional regulator HU subunit beta [Escherichia fergusonii ECD227] gi|326341204|gb|EGD64996.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1044] gi|326346021|gb|EGD69760.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1125] gi|327254768|gb|EGE66384.1| DNA-binding protein HU-beta [Escherichia coli STEC_7v] gi|330910234|gb|EGH38744.1| DNA-binding protein HU-beta [Escherichia coli AA86] gi|331037758|gb|EGI09978.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736] gi|331045778|gb|EGI17904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605] gi|331051119|gb|EGI23171.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718] gi|331054745|gb|EGI26754.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206] gi|331060243|gb|EGI32207.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143] gi|331066020|gb|EGI37904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271] gi|331076170|gb|EGI47452.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591] gi|331081037|gb|EGI52202.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299] gi|332085888|gb|EGI91052.1| DNA-binding protein HU-beta [Shigella dysenteriae 155-74] gi|332094596|gb|EGI99642.1| DNA-binding protein HU-beta [Shigella boydii 5216-82] gi|332098606|gb|EGJ03572.1| DNA-binding protein HU-beta [Shigella boydii 3594-74] gi|332103943|gb|EGJ07289.1| transcriptional regulator HU subunit beta [Shigella sp. D9] gi|332341804|gb|AEE55138.1| transcriptional regulator protein HU, subunit beta HupB [Escherichia coli UMNK88] gi|332761491|gb|EGJ91773.1| DNA-binding protein HU-beta [Shigella flexneri 2747-71] gi|332763739|gb|EGJ93977.1| DNA-binding protein HU-beta [Shigella flexneri K-671] gi|333007920|gb|EGK27396.1| DNA-binding protein HU-beta [Shigella flexneri K-218] gi|333008126|gb|EGK27601.1| DNA-binding protein HU-beta [Shigella flexneri VA-6] gi|333010901|gb|EGK30327.1| DNA-binding protein HU-beta [Shigella flexneri K-272] gi|333020703|gb|EGK39963.1| DNA-binding protein HU-beta [Shigella flexneri K-227] gi|333021963|gb|EGK41211.1| DNA-binding protein HU-beta [Shigella flexneri K-304] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90 >gi|91223955|ref|ZP_01259219.1| integration host factor alpha subunit [Vibrio alginolyticus 12G01] gi|262394474|ref|YP_003286328.1| integration host factor subunit alpha [Vibrio sp. Ex25] gi|269966318|ref|ZP_06180405.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B] gi|91191447|gb|EAS77712.1| integration host factor alpha subunit [Vibrio alginolyticus 12G01] gi|262338068|gb|ACY51863.1| integration host factor alpha subunit [Vibrio sp. Ex25] gi|269829057|gb|EEZ83304.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B] Length = 98 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|290475541|ref|YP_003468429.1| integration host factor (IHF) subunit alpha, DNA-bending protein, DNA replication [Xenorhabdus bovienii SS-2004] gi|289174862|emb|CBJ81663.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Xenorhabdus bovienii SS-2004] Length = 98 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRHSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRVEKALP 96 >gi|262275830|ref|ZP_06053639.1| integration host factor alpha subunit [Grimontia hollisae CIP 101886] gi|262219638|gb|EEY70954.1| integration host factor alpha subunit [Grimontia hollisae CIP 101886] Length = 98 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFENVGMSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEKA 94 >gi|307704962|ref|ZP_07641850.1| DNA-binding protein HU [Streptococcus mitis SK597] gi|307621472|gb|EFO00521.1| DNA-binding protein HU [Streptococcus mitis SK597] Length = 91 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFSAVTDYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91 >gi|126667906|ref|ZP_01738871.1| integration host factor subunit alpha [Marinobacter sp. ELB17] gi|126627566|gb|EAZ98198.1| integration host factor subunit alpha [Marinobacter sp. ELB17] Length = 100 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 55/98 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + E GL+++++ V F+E+ + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYDELGLNKREAKEMVEAFFDEVRGALGHNEQVKLSGFGNFDLRDKKERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I RRVV F+ LK ++ + ++ Sbjct: 63 GRNPKTGEEIPICARRVVTFRPGQKLKAKVEAYVETQQ 100 >gi|302878220|ref|YP_003846784.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] gi|302581009|gb|ADL55020.1| integration host factor, alpha subunit [Gallionella capsiferriformans ES-2] Length = 101 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 54/96 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 2 TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRVKLEQSEEVKLSGFGNFQLRDKQQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +E+ I RRVV F S+ LK + + G Sbjct: 62 GRNPKTGEEIPISARRVVTFHPSAKLKNLVEKNYHG 97 >gi|289208103|ref|YP_003460169.1| integration host factor, subunit alpha [Thioalkalivibrio sp. K90mix] gi|288943734|gb|ADC71433.1| integration host factor, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 99 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 56/91 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL ++++E GL+++++ FV F E+ S GE +K+S F F ++ K R Sbjct: 3 AVTKADLAATLNEELGLNKREAKEFVEMFFEEMRQSLEDGEGVKLSGFGNFILRDKNQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ + RRVV F+ L++R+ Sbjct: 63 GRNPKTGEEIPVSARRVVTFRPGQKLRERVE 93 >gi|104781016|ref|YP_607514.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48] gi|95110003|emb|CAK14708.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + +G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI +V FKA LK + Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAVN 90 >gi|61658219|gb|AAX49386.1| DNA-binding protein HU [Aeromonas hydrophila] Length = 98 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ++ LV +I+ + LS+ + + + N I S G A+++ F TF V + Sbjct: 6 GNVMNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGGAVQLVGFGTFKVNHRAG 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT +E++I V F A LK + Sbjct: 66 RTGRNPQTGKEIQIAAANVPSFVAGKALKDAVK 98 >gi|298528590|ref|ZP_07015994.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512242|gb|EFI36144.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +V S++++ G+++ D+ + + + + I + G+ + + F TF V ++ R G Sbjct: 1 MNKKQMVDSLAQKSGMTKADAQKALDGVEDIISEQLKNGDQVALPGFGTFTVAERKPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I RV FK LK+ + Sbjct: 61 RNPQTGAEINIPAARVPKFKPGKKLKEAV 89 >gi|91793844|ref|YP_563495.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] gi|91715846|gb|ABE55772.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKSLKDAVN 90 >gi|209883627|ref|YP_002287484.1| integration host factor, beta subunit [Oligotropha carboxidovorans OM5] gi|226709797|sp|B6JCN9|IHFB_OLICO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|209871823|gb|ACI91619.1| integration host factor, beta subunit [Oligotropha carboxidovorans OM5] Length = 106 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 GRN +T + V ++ + V FK +++R+ D D T PS Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD------GLDGATPPS 102 >gi|188581269|ref|YP_001924714.1| histone family protein DNA-binding protein [Methylobacterium populi BJ001] gi|226709733|sp|B1ZKI7|IHFA_METPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|179344767|gb|ACB80179.1| histone family protein DNA-binding protein [Methylobacterium populi BJ001] Length = 108 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 46/105 (43%), Positives = 69/105 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V T+ EIC+ GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLSEAVYQQVGLSRAESAALVETVLGEICNCLSSGETVKLSSFGSFVVRSKGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R+GRN +T EV+I+PR+V+VFK S++LK RI +D Sbjct: 63 RIGRNPKTGVEVEIEPRQVMVFKPSNVLKARINGGHVNGLDADED 107 >gi|30995375|ref|NP_438591.2| DNA-binding protein HU-alpha [Haemophilus influenzae Rd KW20] gi|145628799|ref|ZP_01784599.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21] gi|145630394|ref|ZP_01786175.1| NADH pyrophosphatase [Haemophilus influenzae R3021] gi|145632675|ref|ZP_01788409.1| DNA-binding protein HU [Haemophilus influenzae 3655] gi|145634573|ref|ZP_01790282.1| NADH pyrophosphatase [Haemophilus influenzae PittAA] gi|145636301|ref|ZP_01791970.1| NADH pyrophosphatase [Haemophilus influenzae PittHH] gi|145638660|ref|ZP_01794269.1| NADH pyrophosphatase [Haemophilus influenzae PittII] gi|145640395|ref|ZP_01795979.1| DNA-binding protein HU [Haemophilus influenzae R3021] gi|148825290|ref|YP_001290043.1| NADH pyrophosphatase [Haemophilus influenzae PittEE] gi|148827627|ref|YP_001292380.1| DNA-binding protein HU [Haemophilus influenzae PittGG] gi|229844410|ref|ZP_04464550.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1] gi|229846516|ref|ZP_04466624.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1] gi|319775643|ref|YP_004138131.1| DNA-binding protein HU [Haemophilus influenzae F3047] gi|1169231|sp|P43722|DBH_HAEIN RecName: Full=DNA-binding protein HU gi|144979269|gb|EDJ88955.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21] gi|144984129|gb|EDJ91566.1| NADH pyrophosphatase [Haemophilus influenzae R3021] gi|144986870|gb|EDJ93422.1| DNA-binding protein HU [Haemophilus influenzae 3655] gi|145268118|gb|EDK08113.1| NADH pyrophosphatase [Haemophilus influenzae PittAA] gi|145270466|gb|EDK10400.1| NADH pyrophosphatase [Haemophilus influenzae PittHH] gi|145272255|gb|EDK12163.1| NADH pyrophosphatase [Haemophilus influenzae PittII] gi|145274981|gb|EDK14843.1| DNA-binding protein HU [Haemophilus influenzae 22.4-21] gi|148715450|gb|ABQ97660.1| NADH pyrophosphatase [Haemophilus influenzae PittEE] gi|148718869|gb|ABQ99996.1| DNA-binding protein HU [Haemophilus influenzae PittGG] gi|229810609|gb|EEP46327.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1] gi|229812659|gb|EEP48348.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1] gi|301169130|emb|CBW28727.1| HU, DNA-binding transcriptional regulator, alpha subunit [Haemophilus influenzae 10810] gi|309750154|gb|ADO80138.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2866] gi|317450234|emb|CBY86450.1| DNA-binding protein HU [Haemophilus influenzae F3047] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S GE +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >gi|163814658|ref|ZP_02206047.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC 27759] gi|158450293|gb|EDP27288.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC 27759] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KD+ + + + D +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAEKTKLSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FKA LK I Sbjct: 61 RNPRTGETMTIAASKAPKFKAGKALKDSIN 90 >gi|26989027|ref|NP_744452.1| histone family protein DNA-binding protein [Pseudomonas putida KT2440] gi|148548674|ref|YP_001268776.1| histone family protein DNA-binding protein [Pseudomonas putida F1] gi|14028717|gb|AAK52475.1|AF345628_1 histone-like protein HU form B [Pseudomonas putida] gi|24983851|gb|AAN67916.1|AE016424_2 DNA-binding protein HU-beta [Pseudomonas putida KT2440] gi|148512732|gb|ABQ79592.1| bacterial nucleoid protein HU beta subunit [Pseudomonas putida F1] gi|313499611|gb|ADR60977.1| HupB [Pseudomonas putida BIRD-1] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + +G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI+ +V FKA LK + Sbjct: 61 RNPQTGKAIKIEAAKVPGFKAGKGLKDAVN 90 >gi|153815229|ref|ZP_01967897.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC 27756] gi|317502314|ref|ZP_07960483.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA] gi|331089918|ref|ZP_08338810.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA] gi|145847488|gb|EDK24406.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC 27756] gi|316896270|gb|EFV18372.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA] gi|330403150|gb|EGG82711.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++ +S+KDS + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELITAIAESADISKKDSEKALKAFVDVVTEELKKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI+ + FKA LK I Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAIN 90 >gi|49075042|gb|AAT49447.1| PA2738 [synthetic construct] Length = 101 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ K + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEIAKRLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T +E+ I RRVV F+ LK R+ + G K Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARV-EAYAGTKSG 101 >gi|302388378|ref|YP_003824200.1| histone family protein DNA-binding protein [Clostridium saccharolyticum WM1] gi|302199006|gb|ADL06577.1| histone family protein DNA-binding protein [Clostridium saccharolyticum WM1] Length = 91 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V L + I + V+GE I++ F TF V ++ +R G Sbjct: 1 MNKAELIAAVAEKAELSKKDAEKAVKALTDVISEELVKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + + I + FKA LK + Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALKDMVN 90 >gi|241889358|ref|ZP_04776659.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379] gi|317496555|ref|ZP_07954904.1| DNA-binding protein [Gemella moribillum M424] gi|329767598|ref|ZP_08259119.1| DNA-binding protein HU [Gemella haemolysans M341] gi|329768861|ref|ZP_08260289.1| DNA-binding protein HU [Gemella sanguinis M325] gi|241863901|gb|EER68282.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379] gi|316913358|gb|EFV34855.1| DNA-binding protein [Gemella moribillum M424] gi|328837224|gb|EGF86861.1| DNA-binding protein HU [Gemella sanguinis M325] gi|328839225|gb|EGF88809.1| DNA-binding protein HU [Gemella haemolysans M341] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ GL +K +T + + ++ +GE I+I F F V+++ +R G Sbjct: 1 MNKSELISKVAEKSGLQKKQATAAIEAFVETVEETLAKGEKIQIIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QTN+ ++I +V FKA LK + Sbjct: 61 RNPQTNEVIEIAASKVPAFKAGKALKDAVK 90 >gi|152968975|ref|YP_001334084.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578345|ref|YP_002240080.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342] gi|238893389|ref|YP_002918123.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|261341041|ref|ZP_05968899.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|262042476|ref|ZP_06015635.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936831|ref|YP_003440890.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|290510113|ref|ZP_06549483.1| transcriptional regulator HU subunit alpha [Klebsiella sp. 1_1_55] gi|296101562|ref|YP_003611708.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|311280663|ref|YP_003942894.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|330011536|ref|ZP_08307122.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3] gi|150953824|gb|ABR75854.1| DNA-binding protein HU-beta, NS1 (HU-1) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567403|gb|ACI09179.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342] gi|238545705|dbj|BAH62056.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040180|gb|EEW41292.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288316906|gb|EFC55844.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|288891540|gb|ADC59858.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|289776829|gb|EFD84827.1| transcriptional regulator HU subunit alpha [Klebsiella sp. 1_1_55] gi|295056021|gb|ADF60759.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|308749858|gb|ADO49610.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|328534153|gb|EGF60788.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90 >gi|157962499|ref|YP_001502533.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] gi|157847499|gb|ABV87998.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] Length = 90 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G+ I + F TF V+Q+ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA LK + Sbjct: 61 RNPQTGKEIKIAAANIPAFKAGKALKDAVN 90 >gi|262374865|ref|ZP_06068099.1| integration host factor, alpha subunit [Acinetobacter lwoffii SH145] gi|262309878|gb|EEY91007.1| integration host factor, alpha subunit [Acinetobacter lwoffii SH145] Length = 98 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|49475383|ref|YP_033424.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|48727706|gb|AAT46133.1| Hu-like protein [Bartonella henselae] gi|49238189|emb|CAF27399.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 91 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV S++++ G+S+ + V + ++ G +++ F +F V + + G Sbjct: 1 MNKSELVSSVAEKAGVSKAQAGSVVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + Sbjct: 61 RNPSTGAEINIPARSVPKFSAGKSLKEAVNK 91 >gi|238922939|ref|YP_002936452.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656] gi|238874611|gb|ACR74318.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656] Length = 99 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ G+S+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 10 MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 69 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I + FKA LK + Sbjct: 70 RNPQTGAEMTIAASKAPKFKAGKALKDSLN 99 >gi|229074054|ref|ZP_04207110.1| DNA-binding protein HU [Bacillus cereus F65185] gi|229194173|ref|ZP_04321032.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228589314|gb|EEK47274.1| DNA-binding protein HU [Bacillus cereus ATCC 10876] gi|228709071|gb|EEL61189.1| DNA-binding protein HU [Bacillus cereus F65185] Length = 93 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 53/92 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA K+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKEFKEAVK 93 >gi|283796888|ref|ZP_06346041.1| DNA-binding protein HU [Clostridium sp. M62/1] gi|291075298|gb|EFE12662.1| DNA-binding protein HU [Clostridium sp. M62/1] gi|295089874|emb|CBK75981.1| Bacterial nucleoid DNA-binding protein [Clostridium cf. saccharolyticum K10] Length = 91 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + + + + + V+G I++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAIKAFTDTVSEELVKGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FKA LK + Sbjct: 61 RNPKTGETMPIAASKTPKFKAGKALKDMVN 90 >gi|254502221|ref|ZP_05114372.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] gi|222438292|gb|EEE44971.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] Length = 91 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ GL++ + V F + ++ G ++I F F V ++ + G Sbjct: 1 MNKNDLIAAVAEKTGLTKAQAGEAVDASFEAVTETLKGGGEVRIIGFGNFTVSERAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I + FKA LK + Sbjct: 61 RNPRTGETIQIPASKTPKFKAGKGLKDAVN 90 >gi|254785523|ref|YP_003072952.1| integration host factor subunit beta [Teredinibacter turnerae T7901] gi|259492038|sp|C5BSK5|IHFB_TERTT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|237687093|gb|ACR14357.1| integration host factor, beta subunit [Teredinibacter turnerae T7901] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I++ LS KD V + + G+ I+I F +F + + R Sbjct: 1 MTKSELIERIAERQDQLSAKDIELAVKLILEYMSQCLANGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V+++ + V FK ++ R+ + + Sbjct: 61 GRNPKTGESVELEGKFVPHFKPGKEMRDRVNESLE 95 >gi|28898068|ref|NP_797673.1| integration host factor subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|153839847|ref|ZP_01992514.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|260366369|ref|ZP_05778808.1| integration host factor, alpha subunit [Vibrio parahaemolyticus K5030] gi|260878417|ref|ZP_05890772.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260896996|ref|ZP_05905492.1| integration host factor, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901794|ref|ZP_05910189.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|33301264|sp|Q87Q56|IHFA_VIBPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|28806282|dbj|BAC59557.1| integration host factor, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746630|gb|EDM57618.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|308087674|gb|EFO37369.1| integration host factor, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308091287|gb|EFO40982.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108021|gb|EFO45561.1| integration host factor, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308113197|gb|EFO50737.1| integration host factor, alpha subunit [Vibrio parahaemolyticus K5030] gi|328472975|gb|EGF43823.1| integration host factor subunit alpha [Vibrio parahaemolyticus 10329] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ + G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAENLFDKLGFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|229021542|ref|ZP_04178141.1| DNA-binding protein HU [Bacillus cereus AH1273] gi|229027531|ref|ZP_04183759.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|229112981|ref|ZP_04242483.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|229164897|ref|ZP_04292713.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228618548|gb|EEK75558.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228670462|gb|EEL25803.1| DNA-binding protein HU [Bacillus cereus Rock1-15] gi|228733777|gb|EEL84543.1| DNA-binding protein HU [Bacillus cereus AH1272] gi|228739775|gb|EEL90173.1| DNA-binding protein HU [Bacillus cereus AH1273] Length = 90 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALASEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I +V FKA LK + Sbjct: 61 RNPQTGEEMQIAASKVPAFKAGKELKDAVK 90 >gi|13476953|ref|NP_108523.1| integration host factor subunit alpha [Mesorhizobium loti MAFF303099] gi|260460934|ref|ZP_05809184.1| integration host factor, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|21362612|sp|Q982Z7|IHFA_RHILO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|14027716|dbj|BAB54309.1| integration host factor alpha subunit [Mesorhizobium loti MAFF303099] gi|259033511|gb|EEW34772.1| integration host factor, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 107 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +EIC++ VRGE +K+SSFATFHV+ K Sbjct: 3 GKTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FK+S++LK RI+ + K Sbjct: 63 RIGRNPKTGEEVPILPRRVMTFKSSNVLKNRILRSHQNSKAK 104 >gi|27380130|ref|NP_771659.1| integration host factor subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27353284|dbj|BAC50284.1| integration host factor alpha subunit [Bradyrhizobium japonicum USDA 110] Length = 119 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 49/99 (49%), Positives = 69/99 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 11 SKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 R+GRN +T EV I PRRV+VFK S+ILK+RI R Sbjct: 71 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINAQHRTN 109 >gi|294788548|ref|ZP_06753790.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453] gi|294483425|gb|EFG31110.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453] Length = 112 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +S+L+ +I+++ GL++ D+ + + + + D+ + I + F +F V ++ R Sbjct: 6 SMNKSELIDAIAEKSGLTKTDAAKALDAFTSVVKDTLQQNGDITLVGFGSFTVAERAERQ 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N +T + + I RV FK LK ++ Sbjct: 66 GLNPKTKEPITIPAARVPKFKPGKALKDALL 96 >gi|292490562|ref|YP_003526001.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291579157|gb|ADE13614.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 94 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++ E LS+ D+ R V L I + + + F +F V+++ +R G Sbjct: 1 MNKTELVNFVASEANLSQADAQRAVNALLQTIEQTLGEKGMVSLVGFGSFSVQKRSARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ QT + + I V VFK LK+ + R Sbjct: 61 RHPQTGETITIPATNVPVFKPGKALKEAVQQRKR 94 >gi|53804258|ref|YP_113869.1| integration host factor subunit beta [Methylococcus capsulatus str. Bath] gi|81682135|sp|Q608S8|IHFB_METCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|53758019|gb|AAU92310.1| integration host factor, beta subunit [Methylococcus capsulatus str. Bath] Length = 95 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S++ + LS +D + + + ++ GE I+I F +F + + RV Sbjct: 1 MTKSELIESLAGKYPHLSPRDIEHAIKEMIGCMSEALAGGERIEIRGFGSFSLHHRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + RRV FK L+ R+ Sbjct: 61 GRNPKTGESVHLPSRRVPHFKPGKELRDRVN 91 >gi|23501665|ref|NP_697792.1| integration host factor subunit alpha [Brucella suis 1330] gi|62289729|ref|YP_221522.1| integration host factor subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|82699658|ref|YP_414232.1| integration host factor subunit alpha [Brucella melitensis biovar Abortus 2308] gi|161618744|ref|YP_001592631.1| integration host factor subunit alpha [Brucella canis ATCC 23365] gi|189023978|ref|YP_001934746.1| integration host factor subunit alpha [Brucella abortus S19] gi|225852293|ref|YP_002732526.1| integration host factor subunit alpha [Brucella melitensis ATCC 23457] gi|254689038|ref|ZP_05152292.1| integration host factor subunit alpha [Brucella abortus bv. 6 str. 870] gi|254693521|ref|ZP_05155349.1| integration host factor subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|254697173|ref|ZP_05159001.1| integration host factor subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254701551|ref|ZP_05163379.1| integration host factor subunit alpha [Brucella suis bv. 5 str. 513] gi|254704099|ref|ZP_05165927.1| integration host factor subunit alpha [Brucella suis bv. 3 str. 686] gi|254707000|ref|ZP_05168828.1| integration host factor subunit alpha [Brucella pinnipedialis M163/99/10] gi|254709891|ref|ZP_05171702.1| integration host factor subunit alpha [Brucella pinnipedialis B2/94] gi|254713892|ref|ZP_05175703.1| integration host factor subunit alpha [Brucella ceti M644/93/1] gi|254717051|ref|ZP_05178862.1| integration host factor subunit alpha [Brucella ceti M13/05/1] gi|254718895|ref|ZP_05180706.1| integration host factor subunit alpha [Brucella sp. 83/13] gi|254730069|ref|ZP_05188647.1| integration host factor subunit alpha [Brucella abortus bv. 4 str. 292] gi|256031384|ref|ZP_05444998.1| integration host factor subunit alpha [Brucella pinnipedialis M292/94/1] gi|256044463|ref|ZP_05447367.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256113307|ref|ZP_05454175.1| integration host factor subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|256159505|ref|ZP_05457273.1| integration host factor subunit alpha [Brucella ceti M490/95/1] gi|256254791|ref|ZP_05460327.1| integration host factor subunit alpha [Brucella ceti B1/94] gi|256257288|ref|ZP_05462824.1| integration host factor subunit alpha [Brucella abortus bv. 9 str. C68] gi|256264202|ref|ZP_05466734.1| integration host factor subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|256369210|ref|YP_003106718.1| integration host factor alpha subunit [Brucella microti CCM 4915] gi|260168517|ref|ZP_05755328.1| integration host factor subunit alpha [Brucella sp. F5/99] gi|260545518|ref|ZP_05821259.1| integration host factor subunit alpha [Brucella abortus NCTC 8038] gi|260563814|ref|ZP_05834300.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260566653|ref|ZP_05837123.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40] gi|260754533|ref|ZP_05866881.1| integration host factor subunit alpha [Brucella abortus bv. 6 str. 870] gi|260757754|ref|ZP_05870102.1| integration host factor subunit alpha [Brucella abortus bv. 4 str. 292] gi|260761579|ref|ZP_05873922.1| integration host factor subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260883561|ref|ZP_05895175.1| integration host factor subunit alpha [Brucella abortus bv. 9 str. C68] gi|261213781|ref|ZP_05928062.1| integration host factor subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261218861|ref|ZP_05933142.1| integration host factor subunit alpha [Brucella ceti M13/05/1] gi|261221971|ref|ZP_05936252.1| integration host factor subunit alpha [Brucella ceti B1/94] gi|261314467|ref|ZP_05953664.1| integration host factor subunit alpha [Brucella pinnipedialis M163/99/10] gi|261317433|ref|ZP_05956630.1| integration host factor subunit alpha [Brucella pinnipedialis B2/94] gi|261321640|ref|ZP_05960837.1| integration host factor subunit alpha [Brucella ceti M644/93/1] gi|261752100|ref|ZP_05995809.1| integration host factor subunit alpha [Brucella suis bv. 5 str. 513] gi|261754759|ref|ZP_05998468.1| integration host factor subunit alpha [Brucella suis bv. 3 str. 686] gi|261757987|ref|ZP_06001696.1| integration host factor subunit alpha [Brucella sp. F5/99] gi|265983880|ref|ZP_06096615.1| integration host factor subunit alpha [Brucella sp. 83/13] gi|265988470|ref|ZP_06101027.1| integration host factor subunit alpha [Brucella pinnipedialis M292/94/1] gi|265990884|ref|ZP_06103441.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265994720|ref|ZP_06107277.1| integration host factor subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|265997934|ref|ZP_06110491.1| integration host factor subunit alpha [Brucella ceti M490/95/1] gi|294852138|ref|ZP_06792811.1| integration host factor [Brucella sp. NVSL 07-0026] gi|306838205|ref|ZP_07471059.1| integration host factor, alpha subunit [Brucella sp. NF 2653] gi|306843721|ref|ZP_07476321.1| integration host factor, alpha subunit [Brucella sp. BO1] gi|54037412|sp|P64391|IHFA_BRUSU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|54041367|sp|P64390|IHFA_BRUME RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|75505311|sp|Q57DX3|IHFA_BRUAB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123740908|sp|Q2YNB8|IHFA_BRUA2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044694|sp|A9MAF7|IHFA_BRUC2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707370|sp|B2S525|IHFA_BRUA1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803510|sp|C0RIB4|IHFA_BRUMB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|23347586|gb|AAN29707.1| integration host factor, alpha subunit [Brucella suis 1330] gi|62195861|gb|AAX74161.1| HimA, integration host factor, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82615759|emb|CAJ10755.1| Histone-like bacterial DNA-binding protein:Integration host factor, alpha subunit [Brucella melitensis biovar Abortus 2308] gi|161335555|gb|ABX61860.1| integration host factor, alpha subunit [Brucella canis ATCC 23365] gi|189019550|gb|ACD72272.1| Integration host factor, alpha subunit [Brucella abortus S19] gi|225640658|gb|ACO00572.1| integration host factor, alpha subunit [Brucella melitensis ATCC 23457] gi|255999370|gb|ACU47769.1| integration host factor alpha subunit [Brucella microti CCM 4915] gi|260096925|gb|EEW80800.1| integration host factor subunit alpha [Brucella abortus NCTC 8038] gi|260153830|gb|EEW88922.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|260156171|gb|EEW91251.1| integration host factor subunit alpha [Brucella suis bv. 4 str. 40] gi|260668072|gb|EEX55012.1| integration host factor subunit alpha [Brucella abortus bv. 4 str. 292] gi|260672011|gb|EEX58832.1| integration host factor subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260674641|gb|EEX61462.1| integration host factor subunit alpha [Brucella abortus bv. 6 str. 870] gi|260873089|gb|EEX80158.1| integration host factor subunit alpha [Brucella abortus bv. 9 str. C68] gi|260915388|gb|EEX82249.1| integration host factor subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260920555|gb|EEX87208.1| integration host factor subunit alpha [Brucella ceti B1/94] gi|260923950|gb|EEX90518.1| integration host factor subunit alpha [Brucella ceti M13/05/1] gi|261294330|gb|EEX97826.1| integration host factor subunit alpha [Brucella ceti M644/93/1] gi|261296656|gb|EEY00153.1| integration host factor subunit alpha [Brucella pinnipedialis B2/94] gi|261303493|gb|EEY06990.1| integration host factor subunit alpha [Brucella pinnipedialis M163/99/10] gi|261737971|gb|EEY25967.1| integration host factor subunit alpha [Brucella sp. F5/99] gi|261741853|gb|EEY29779.1| integration host factor subunit alpha [Brucella suis bv. 5 str. 513] gi|261744512|gb|EEY32438.1| integration host factor subunit alpha [Brucella suis bv. 3 str. 686] gi|262552402|gb|EEZ08392.1| integration host factor subunit alpha [Brucella ceti M490/95/1] gi|262765833|gb|EEZ11622.1| integration host factor subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263001668|gb|EEZ14243.1| integration host factor subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|263094446|gb|EEZ18268.1| integration host factor subunit alpha [Brucella melitensis bv. 2 str. 63/9] gi|264660667|gb|EEZ30928.1| integration host factor subunit alpha [Brucella pinnipedialis M292/94/1] gi|264662472|gb|EEZ32733.1| integration host factor subunit alpha [Brucella sp. 83/13] gi|294820727|gb|EFG37726.1| integration host factor [Brucella sp. NVSL 07-0026] gi|306276031|gb|EFM57740.1| integration host factor, alpha subunit [Brucella sp. BO1] gi|306406714|gb|EFM62939.1| integration host factor, alpha subunit [Brucella sp. NF 2653] Length = 107 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 48/102 (47%), Positives = 74/102 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 63 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 104 >gi|24379067|ref|NP_721022.1| putative DNA-binding protein [Streptococcus mutans UA159] gi|290580914|ref|YP_003485306.1| putative DNA-binding protein [Streptococcus mutans NN2025] gi|14194638|sp|Q9XB21|DBH_STRMU RecName: Full=DNA-binding protein HU gi|5209332|gb|AAD40810.1|L40355_1 histone-like DNA-binding protein [Streptococcus mutans] gi|24376965|gb|AAN58328.1|AE014903_4 putative DNA-binding protein [Streptococcus mutans UA159] gi|254997813|dbj|BAH88414.1| putative DNA-binding protein [Streptococcus mutans NN2025] Length = 91 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGEEIKIKASKVPAFKAGKALKDAVK 91 >gi|194334586|ref|YP_002016446.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] gi|194312404|gb|ACF46799.1| histone family protein DNA-binding protein [Prosthecochloris aestuarii DSM 271] Length = 103 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 57/103 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT T++DLV +IS GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MSKTTTKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+ RN +T ++V ++ + V FK S K + ++ Sbjct: 61 ERLARNPRTGEKVSVEAKNVPTFKISKEFKHAVSQSLQTNDAK 103 >gi|146310568|ref|YP_001175642.1| transcriptional regulator HU subunit beta [Enterobacter sp. 638] gi|145317444|gb|ABP59591.1| bacterial nucleoid protein HU beta subunit [Enterobacter sp. 638] Length = 90 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDALIASVTETLQSGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90 >gi|255320840|ref|ZP_05362014.1| integration host factor, alpha subunit [Acinetobacter radioresistens SK82] gi|262380267|ref|ZP_06073422.1| integration host factor, alpha subunit [Acinetobacter radioresistens SH164] gi|255302009|gb|EET81252.1| integration host factor, alpha subunit [Acinetobacter radioresistens SK82] gi|262298461|gb|EEY86375.1| integration host factor, alpha subunit [Acinetobacter radioresistens SH164] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|307822661|ref|ZP_07652892.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] gi|307736265|gb|EFO07111.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] Length = 90 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I++ L++ D+ R + + + G+++ + F T+ VK++ R G Sbjct: 1 MNKSELIDAIAESAELTKADAGRALDGFIGAVTKALSSGDSVALVGFGTYAVKERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I ++ FKA LK + Sbjct: 61 RNPQTGAEITIKAAKIPSFKAGKSLKDAVN 90 >gi|270156948|ref|ZP_06185605.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|289164628|ref|YP_003454766.1| DNA-binding protein HU-beta [Legionella longbeachae NSW150] gi|269988973|gb|EEZ95227.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|288857801|emb|CBJ11645.1| putative DNA-binding protein HU-beta [Legionella longbeachae NSW150] Length = 92 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 52/92 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + I D+ G+ + I F +F + +R G Sbjct: 1 MNKSELVDAIASGSGLTKADASRVLETFTSTITDALRSGDQVVIPGFGSFSTGNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + ++I RV FKA LK+ + + Sbjct: 61 RNPQTGKVIQIKASRVAKFKAGKNLKEAVQEA 92 >gi|254423790|ref|ZP_05037508.1| DNA-binding protein HU [Synechococcus sp. PCC 7335] gi|196191279|gb|EDX86243.1| DNA-binding protein HU [Synechococcus sp. PCC 7335] Length = 92 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 51/92 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +S+KD+ +T + + I +S +G+ + + F +F + + +R G Sbjct: 1 MNKAELIDMVAEKADVSKKDADVVLTAVIDSIMESVAKGDKVSLVGFGSFEPRDRKARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + +KI V F A K+ + D Sbjct: 61 RNPQTGETIKIPATTVPAFSAGKGFKQLVADA 92 >gi|262165483|ref|ZP_06033220.1| integration host factor alpha subunit [Vibrio mimicus VM223] gi|262025199|gb|EEY43867.1| integration host factor alpha subunit [Vibrio mimicus VM223] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEDLFEKLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|170726421|ref|YP_001760447.1| integration host factor subunit alpha [Shewanella woodyi ATCC 51908] gi|226709754|sp|B1KRE5|IHFA_SHEWM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|169811768|gb|ACA86352.1| integration host factor, alpha subunit [Shewanella woodyi ATCC 51908] Length = 97 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 52/93 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVEAFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEA 94 >gi|307546664|ref|YP_003899143.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581] gi|307218688|emb|CBV43958.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581] Length = 91 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK I+ LS+ + R +T + + + +G+ + + F TF +++ +R G Sbjct: 1 MNKSELVKQIATTAELSQAQAERCLTAFTDSVAKTLSQGDKLTLLGFGTFETRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I +V FKA LK + Sbjct: 61 RNPQTGEEMTIPAAKVPAFKAGQGLKDAVKG 91 >gi|294141285|ref|YP_003557263.1| integration host factor subunit alpha [Shewanella violacea DSS12] gi|293327754|dbj|BAJ02485.1| integration host factor, alpha subunit [Shewanella violacea DSS12] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ + R Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANSKR 98 >gi|262374319|ref|ZP_06067595.1| integration host factor, alpha subunit [Acinetobacter junii SH205] gi|262310877|gb|EEY91965.1| integration host factor, alpha subunit [Acinetobacter junii SH205] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIGGEQVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +E+ I RRVV F+A ++R+ ++ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95 >gi|62290020|ref|YP_221813.1| DNA-binding protein HU [Brucella abortus bv. 1 str. 9-941] gi|82699948|ref|YP_414522.1| histone-like DNA-binding protein [Brucella melitensis biovar Abortus 2308] gi|148559071|ref|YP_001259027.1| DNA-binding protein HU [Brucella ovis ATCC 25840] gi|161619058|ref|YP_001592945.1| DNA-binding protein HRL18 [Brucella canis ATCC 23365] gi|163843375|ref|YP_001627779.1| DNA-binding protein HRL18 [Brucella suis ATCC 23445] gi|189024260|ref|YP_001935028.1| Histone-like DNA-binding protein [Brucella abortus S19] gi|225852607|ref|YP_002732840.1| DNA-binding protein HRL18 [Brucella melitensis ATCC 23457] gi|254689333|ref|ZP_05152587.1| DNA-binding protein HU-alpha [Brucella abortus bv. 6 str. 870] gi|254693817|ref|ZP_05155645.1| DNA-binding protein HU-alpha [Brucella abortus bv. 3 str. Tulya] gi|254697466|ref|ZP_05159294.1| DNA-binding protein HU-alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254701851|ref|ZP_05163679.1| DNA-binding protein HU-alpha [Brucella suis bv. 5 str. 513] gi|254704394|ref|ZP_05166222.1| DNA-binding protein HU-alpha [Brucella suis bv. 3 str. 686] gi|254706708|ref|ZP_05168536.1| DNA-binding protein HU-alpha [Brucella pinnipedialis M163/99/10] gi|254710184|ref|ZP_05171995.1| DNA-binding protein HU-alpha [Brucella pinnipedialis B2/94] gi|254719171|ref|ZP_05180982.1| DNA-binding protein HU-alpha [Brucella sp. 83/13] gi|254730363|ref|ZP_05188941.1| DNA-binding protein HU-alpha [Brucella abortus bv. 4 str. 292] gi|256031678|ref|ZP_05445292.1| DNA-binding protein HU-alpha [Brucella pinnipedialis M292/94/1] gi|256044764|ref|ZP_05447668.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256061190|ref|ZP_05451342.1| DNA-binding protein HU-alpha [Brucella neotomae 5K33] gi|256113663|ref|ZP_05454474.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 3 str. Ether] gi|256159834|ref|ZP_05457567.1| DNA-binding protein HU-alpha [Brucella ceti M490/95/1] gi|256255080|ref|ZP_05460616.1| DNA-binding protein HU-alpha [Brucella ceti B1/94] gi|256257579|ref|ZP_05463115.1| DNA-binding protein HU-alpha [Brucella abortus bv. 9 str. C68] gi|256263900|ref|ZP_05466432.1| histone family protein DNA-binding protein [Brucella melitensis bv. 2 str. 63/9] gi|256369532|ref|YP_003107042.1| DNA-binding protein HU [Brucella microti CCM 4915] gi|260168812|ref|ZP_05755623.1| DNA-binding protein HU-alpha [Brucella sp. F5/99] gi|260546573|ref|ZP_05822312.1| histone family protein DNA-binding protein [Brucella abortus NCTC 8038] gi|260565634|ref|ZP_05836118.1| histone family protein DNA-binding protein [Brucella melitensis bv. 1 str. 16M] gi|260566358|ref|ZP_05836828.1| histone family protein DNA-binding protein [Brucella suis bv. 4 str. 40] gi|260754849|ref|ZP_05867197.1| histone family protein DNA-binding protein [Brucella abortus bv. 6 str. 870] gi|260758066|ref|ZP_05870414.1| histone family protein DNA-binding protein [Brucella abortus bv. 4 str. 292] gi|260761890|ref|ZP_05874233.1| histone family protein DNA-binding protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883861|ref|ZP_05895475.1| histone family protein DNA-binding protein [Brucella abortus bv. 9 str. C68] gi|261214100|ref|ZP_05928381.1| histone family protein DNA-binding protein [Brucella abortus bv. 3 str. Tulya] gi|261222273|ref|ZP_05936554.1| histone family protein DNA-binding protein [Brucella ceti B1/94] gi|261314170|ref|ZP_05953367.1| histone family protein DNA-binding protein [Brucella pinnipedialis M163/99/10] gi|261317741|ref|ZP_05956938.1| histone family protein DNA-binding protein [Brucella pinnipedialis B2/94] gi|261325196|ref|ZP_05964393.1| histone family protein DNA-binding protein [Brucella neotomae 5K33] gi|261752412|ref|ZP_05996121.1| histone family protein DNA-binding protein [Brucella suis bv. 5 str. 513] gi|261755072|ref|ZP_05998781.1| histone family protein DNA-binding protein [Brucella suis bv. 3 str. 686] gi|261758297|ref|ZP_06002006.1| histone family protein DNA-binding protein [Brucella sp. F5/99] gi|265984167|ref|ZP_06096902.1| histone family protein DNA-binding protein [Brucella sp. 83/13] gi|265988772|ref|ZP_06101329.1| histone family protein DNA-binding protein [Brucella pinnipedialis M292/94/1] gi|265991187|ref|ZP_06103744.1| histone family protein DNA-binding protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995023|ref|ZP_06107580.1| histone family protein DNA-binding protein [Brucella melitensis bv. 3 str. Ether] gi|265998237|ref|ZP_06110794.1| histone family protein DNA-binding protein [Brucella ceti M490/95/1] gi|297248421|ref|ZP_06932139.1| DNA-binding protein HU-beta [Brucella abortus bv. 5 str. B3196] gi|306838163|ref|ZP_07471019.1| DNA-binding protein HU [Brucella sp. NF 2653] gi|62196152|gb|AAX74452.1| DNA-binding protein HU [Brucella abortus bv. 1 str. 9-941] gi|82616049|emb|CAJ11085.1| Histone-like bacterial DNA-binding protein [Brucella melitensis biovar Abortus 2308] gi|148370328|gb|ABQ60307.1| DNA-binding protein HU [Brucella ovis ATCC 25840] gi|161335869|gb|ABX62174.1| DNA-binding protein HRL18 [Brucella canis ATCC 23365] gi|163674098|gb|ABY38209.1| DNA-binding protein HRL18 [Brucella suis ATCC 23445] gi|189019832|gb|ACD72554.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19] gi|225640972|gb|ACO00886.1| DNA-binding protein HRL18 [Brucella melitensis ATCC 23457] gi|255999694|gb|ACU48093.1| DNA-binding protein HU [Brucella microti CCM 4915] gi|260095623|gb|EEW79500.1| histone family protein DNA-binding protein [Brucella abortus NCTC 8038] gi|260151702|gb|EEW86796.1| histone family protein DNA-binding protein [Brucella melitensis bv. 1 str. 16M] gi|260155876|gb|EEW90956.1| histone family protein DNA-binding protein [Brucella suis bv. 4 str. 40] gi|260668384|gb|EEX55324.1| histone family protein DNA-binding protein [Brucella abortus bv. 4 str. 292] gi|260672322|gb|EEX59143.1| histone family protein DNA-binding protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674957|gb|EEX61778.1| histone family protein DNA-binding protein [Brucella abortus bv. 6 str. 870] gi|260873389|gb|EEX80458.1| histone family protein DNA-binding protein [Brucella abortus bv. 9 str. C68] gi|260915707|gb|EEX82568.1| histone family protein DNA-binding protein [Brucella abortus bv. 3 str. Tulya] gi|260920857|gb|EEX87510.1| histone family protein DNA-binding protein [Brucella ceti B1/94] gi|261296964|gb|EEY00461.1| histone family protein DNA-binding protein [Brucella pinnipedialis B2/94] gi|261301176|gb|EEY04673.1| histone family protein DNA-binding protein [Brucella neotomae 5K33] gi|261303196|gb|EEY06693.1| histone family protein DNA-binding protein [Brucella pinnipedialis M163/99/10] gi|261738281|gb|EEY26277.1| histone family protein DNA-binding protein [Brucella sp. F5/99] gi|261742165|gb|EEY30091.1| histone family protein DNA-binding protein [Brucella suis bv. 5 str. 513] gi|261744825|gb|EEY32751.1| histone family protein DNA-binding protein [Brucella suis bv. 3 str. 686] gi|262552705|gb|EEZ08695.1| histone family protein DNA-binding protein [Brucella ceti M490/95/1] gi|262766136|gb|EEZ11925.1| histone family protein DNA-binding protein [Brucella melitensis bv. 3 str. Ether] gi|263001971|gb|EEZ14546.1| histone family protein DNA-binding protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094032|gb|EEZ17966.1| histone family protein DNA-binding protein [Brucella melitensis bv. 2 str. 63/9] gi|264660969|gb|EEZ31230.1| histone family protein DNA-binding protein [Brucella pinnipedialis M292/94/1] gi|264662759|gb|EEZ33020.1| histone family protein DNA-binding protein [Brucella sp. 83/13] gi|297175590|gb|EFH34937.1| DNA-binding protein HU-beta [Brucella abortus bv. 5 str. B3196] gi|306406753|gb|EFM62976.1| DNA-binding protein HU [Brucella sp. NF 2653] gi|326409126|gb|ADZ66191.1| Histone-like bacterial DNA-binding protein [Brucella melitensis M28] gi|326538834|gb|ADZ87049.1| DNA-binding protein HRL18 [Brucella melitensis M5-90] Length = 91 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 1 MNKNELVAAVAEKGGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91 >gi|255019929|ref|ZP_05292003.1| Integration host factor alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254970588|gb|EET28076.1| Integration host factor alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 99 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V + GL+++++ V + F+ I ++ RGE +K+S F F +++K R Sbjct: 2 AVTKAEIVDMLYDTMGLNKREAKGIVESFFDSIRETLARGEEVKLSGFGNFTLREKNPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T E+ I RRVV F S LK + Sbjct: 62 GRNPKTGVEITITARRVVTFHPSQKLKAYVNG 93 >gi|288941368|ref|YP_003443608.1| integration host factor subunit beta [Allochromatium vinosum DSM 180] gi|288896740|gb|ADC62576.1| integration host factor, beta subunit [Allochromatium vinosum DSM 180] Length = 120 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ + L KD V + + + GE I+I F +F + + R+ Sbjct: 1 MTKSELIDILAADQDHLPYKDVEEAVRKILERMSTALATGERIEIRGFGSFSLHYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 GRN +T + V + + V FK L+ R+ + + V+S G Sbjct: 61 GRNPKTGESVALAAKHVPHFKPGKELRDRVNLAFQDSQSPDSAVSSDDG 109 >gi|16759431|ref|NP_455048.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763832|ref|NP_459447.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142797|ref|NP_806139.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414393|ref|YP_151468.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179063|ref|YP_215480.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161504372|ref|YP_001571484.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615354|ref|YP_001589319.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551733|ref|ZP_02345486.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990435|ref|ZP_02571535.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231440|ref|ZP_02656498.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237566|ref|ZP_02662624.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240280|ref|ZP_02665212.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261112|ref|ZP_02683085.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465545|ref|ZP_02699427.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818937|ref|ZP_02830937.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446645|ref|YP_002039694.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449059|ref|YP_002044486.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469706|ref|ZP_03075690.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735846|ref|YP_002113482.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249293|ref|YP_002145432.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265364|ref|ZP_03165438.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363313|ref|YP_002142950.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198246187|ref|YP_002214405.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390435|ref|ZP_03217046.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930591|ref|ZP_03221521.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351762|ref|YP_002225563.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855931|ref|YP_002242582.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213160791|ref|ZP_03346501.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419827|ref|ZP_03352893.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425853|ref|ZP_03358603.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582252|ref|ZP_03364078.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622866|ref|ZP_03375649.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646002|ref|ZP_03376055.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850135|ref|ZP_03381033.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582289|ref|YP_002636087.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911418|ref|ZP_04655255.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289811835|ref|ZP_06542464.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|60392171|sp|P0A1R8|DBHB_SALTY RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|60392172|sp|P0A1R9|DBHB_SALTI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1; AltName: Full=NS1 gi|25294358|pir||AF0558 DNA-binding protein HU-beta [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|581767|emb|CAA30692.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16418958|gb|AAL19406.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501722|emb|CAD08910.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhi] gi|29138429|gb|AAO69999.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128650|gb|AAV78156.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126696|gb|AAX64399.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160865719|gb|ABX22342.1| hypothetical protein SARI_02483 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364718|gb|ABX68486.1| hypothetical protein SPAB_03125 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405308|gb|ACF65530.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407363|gb|ACF67582.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456070|gb|EDX44909.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711348|gb|ACF90569.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631882|gb|EDX50402.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094790|emb|CAR60323.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212996|gb|ACH50393.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243619|gb|EDY26239.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289548|gb|EDY28911.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940703|gb|ACH78036.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602880|gb|EDZ01426.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320525|gb|EDZ05728.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271543|emb|CAR36361.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323417|gb|EDZ11256.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330927|gb|EDZ17691.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333955|gb|EDZ20719.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339741|gb|EDZ26505.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344199|gb|EDZ30963.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350073|gb|EDZ36704.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707734|emb|CAR32019.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466816|gb|ACN44646.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245734|emb|CBG23531.1| DNA-binding protein Hu-beta [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992167|gb|ACY87052.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157062|emb|CBW16546.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911484|dbj|BAJ35458.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084725|emb|CBY94516.1| Integration host factor subunit beta IHF-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226029|gb|EFX51080.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614729|gb|EFY11658.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618835|gb|EFY15723.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623542|gb|EFY20381.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629159|gb|EFY25938.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631880|gb|EFY28634.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637383|gb|EFY34085.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642068|gb|EFY38678.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647887|gb|EFY44362.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652565|gb|EFY48919.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653273|gb|EFY49606.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660578|gb|EFY56814.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664730|gb|EFY60923.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669217|gb|EFY65367.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670762|gb|EFY66895.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678999|gb|EFY75054.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682028|gb|EFY78053.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685143|gb|EFY81140.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713524|gb|EFZ05095.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128771|gb|ADX16201.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192963|gb|EFZ78186.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196955|gb|EFZ82097.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203940|gb|EFZ88957.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206975|gb|EFZ91928.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323214178|gb|EFZ98936.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214498|gb|EFZ99249.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219160|gb|EGA03657.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227004|gb|EGA11185.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230178|gb|EGA14298.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233916|gb|EGA18005.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238390|gb|EGA22448.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244077|gb|EGA28086.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246238|gb|EGA30221.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251864|gb|EGA35727.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257860|gb|EGA41539.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261126|gb|EGA44718.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264944|gb|EGA48443.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272507|gb|EGA55914.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622154|gb|EGE28499.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626797|gb|EGE33140.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987400|gb|AEF06383.1| transcriptional regulator HU subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|226110|prf||1410323A histone-like protein Length = 90 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPSFRAGKALKDAVN 90 >gi|309972413|gb|ADO95614.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2846] Length = 90 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S +GE +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >gi|83592888|ref|YP_426640.1| histone-like DNA-binding protein [Rhodospirillum rubrum ATCC 11170] gi|83575802|gb|ABC22353.1| Histone-like DNA-binding protein [Rhodospirillum rubrum ATCC 11170] Length = 91 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ GLS+ D+ + V +F+ I + + +++ F TF V ++ + G Sbjct: 1 MNKNDLIAAVADSAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FK LK + Sbjct: 61 RNPRTGETIAIPASKQPKFKPGKGLKDAVN 90 >gi|85708103|ref|ZP_01039169.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1] gi|85689637|gb|EAQ29640.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1] Length = 90 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ GL++ D+ V +F+ I + G+ +++ F TF V ++ + +G Sbjct: 1 MNKNDLISAVAENSGLTKSDAANAVEGVFDAIQKALADGDEVRLVGFGTFAVAKRKASMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMPIKASNQPKFKAGKGLKDAVN 90 >gi|153009533|ref|YP_001370748.1| histone family DNA-binding protein [Ochrobactrum anthropi ATCC 49188] gi|151561421|gb|ABS14919.1| histone family protein DNA-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 91 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 1 MNKNELVAAVAEKGGLTKADAGTAVDAVLAAVTGALKAGEEVRLPGFGVFSVSHRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91 >gi|118595083|ref|ZP_01552430.1| integration host factor subunit alpha [Methylophilales bacterium HTCC2181] gi|118440861|gb|EAV47488.1| integration host factor subunit alpha [Methylophilales bacterium HTCC2181] Length = 100 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 57/99 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + + + GL++ ++ V F EI + G+++K+S F F ++ K R Sbjct: 2 TLTKAELSEILFDQVGLNKSEAKEMVEAFFEEIRSALENGDSVKLSGFGNFDLRTKAERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T +E+ I RRVV F +S LK + + G++ Sbjct: 62 GRNPKTGEEIPIKARRVVTFHSSQKLKTSVEEKTAGKQT 100 >gi|113970148|ref|YP_733941.1| integration host factor subunit alpha [Shewanella sp. MR-4] gi|114047662|ref|YP_738212.1| integration host factor subunit alpha [Shewanella sp. MR-7] gi|123029698|sp|Q0HJ83|IHFA_SHESM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|123030574|sp|Q0HUQ0|IHFA_SHESR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|113884832|gb|ABI38884.1| integration host factor, alpha subunit [Shewanella sp. MR-4] gi|113889104|gb|ABI43155.1| integration host factor, alpha subunit [Shewanella sp. MR-7] Length = 98 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ G+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVEASNAGK 98 >gi|123430771|ref|XP_001307951.1| DNA-binding protein HU [Trichomonas vaginalis G3] gi|121889606|gb|EAX95021.1| DNA-binding protein HU, putative [Trichomonas vaginalis G3] Length = 92 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ GL++KD+ + + + ++ GE +++ F TF V+Q+ +R G Sbjct: 1 MNKSELVASIAEKSGLTKKDAEQALNGFITSVQEALADGEKVQLVGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E +KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92 >gi|322515115|ref|ZP_08068120.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976] gi|322118880|gb|EFX91067.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976] Length = 90 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ LS+KD+ + I +S +G+A+++ F TF V ++ +R G Sbjct: 1 MNKTELIDAIAAGAELSKKDAKAALEATLEAISESLKKGDAVQLIGFGTFKVNERNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +V F A LK + Sbjct: 61 RNPRTGEEIKIAAAKVPAFVAGKALKDLVK 90 >gi|170720930|ref|YP_001748618.1| histone family protein DNA-binding protein [Pseudomonas putida W619] gi|169758933|gb|ACA72249.1| histone family protein DNA-binding protein [Pseudomonas putida W619] Length = 90 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + + G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI +V FKA LK + Sbjct: 61 RNPQTGKTIKIAAAKVPGFKAGKGLKDAVN 90 >gi|15837792|ref|NP_298480.1| histone-like protein [Xylella fastidiosa 9a5c] gi|14194631|sp|Q9PE38|DBH_XYLFA RecName: Full=DNA-binding protein HU gi|9106160|gb|AAF84000.1|AE003953_4 histone-like protein [Xylella fastidiosa 9a5c] Length = 94 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ +G+++ + F TF V+ + R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + + I FK LK + Sbjct: 61 RNPKSGELIMIAASNNPSFKPGKALKDAVK 90 >gi|229077218|ref|ZP_04209912.1| DNA-binding protein HU [Bacillus cereus Rock4-18] gi|229119652|ref|ZP_04248924.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228663818|gb|EEL19387.1| DNA-binding protein HU [Bacillus cereus Rock1-3] gi|228706049|gb|EEL58344.1| DNA-binding protein HU [Bacillus cereus Rock4-18] Length = 93 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 53/92 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L+K ++ + L++KD+ + + I ++ E ++I F TF V+++ +R Sbjct: 2 QKMNKTELIKVVADKAELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|291460214|ref|ZP_06599604.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str. F0262] gi|291417161|gb|EFE90880.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str. F0262] Length = 95 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DLV +++K+ LS+KD+ V +F+ I +S + E +++ F TF V ++ +R G Sbjct: 6 MNRMDLVAAVAKKAELSKKDAEAAVKAVFDSISESLEKDEKVQLIGFGTFEVSKRAAREG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI + FKA LK RI Sbjct: 66 RNPRTGETMKIAESKAPRFKAGKALKDRIN 95 >gi|149910317|ref|ZP_01898961.1| DNA-binding protein, HU family [Moritella sp. PE36] gi|149806677|gb|EDM66644.1| DNA-binding protein, HU family [Moritella sp. PE36] Length = 91 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++ + +S+ + R + + + ++ V E++ + F TF V+ + +R G Sbjct: 1 MNKAQLIDCVAAKADISKAAAGRAIDAMIESVTETLVTEESVTLVGFGTFSVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I ++ FKA +LK + Sbjct: 61 RNPQTGAEIQIAASKLPAFKAGKLLKDALK 90 >gi|260768664|ref|ZP_05877598.1| integration host factor alpha subunit [Vibrio furnissii CIP 102972] gi|260616694|gb|EEX41879.1| integration host factor alpha subunit [Vibrio furnissii CIP 102972] gi|315180366|gb|ADT87280.1| integration host factor subunit alpha [Vibrio furnissii NCTC 11218] Length = 97 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ ++ G S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKADLAENLFEKLGFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKARVEN 93 >gi|254469062|ref|ZP_05082468.1| DNA-binding protein HU-beta [beta proteobacterium KB13] gi|207087872|gb|EDZ65155.1| DNA-binding protein HU-beta [beta proteobacterium KB13] Length = 90 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+++I+ G ++ D+ R + I + +G+ + + F TF V ++ +R G Sbjct: 1 MNKGELIEAIASATGSTKADAGRALDATIENITKALKKGDTVTLIGFGTFKVSKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI R+V FKA + LK + Sbjct: 61 RNPQTGAELKIPARKVPSFKAGAGLKDAVN 90 >gi|21673001|ref|NP_661066.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS] gi|21646065|gb|AAM71408.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS] Length = 91 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++L + I+++ GL++ D+ R V N + + G+ + + F TF + R G Sbjct: 1 MSKAELAEKIAEQTGLTKADAERAVNAFINVVTSTLKSGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK+ + Sbjct: 61 RNPQTGKTITIAAKKVVKFKPGKALKEEV 89 >gi|189345899|ref|YP_001942428.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] gi|189340046|gb|ACD89449.1| histone family protein DNA-binding protein [Chlorobium limicola DSM 245] Length = 102 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 57/102 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV +I+ + G+++ ++ V LF I +S G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNAIAHKTGMTKNETEAVVDCLFESIIESLKAGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 R RN +T ++V +DP+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLKNGTA 102 >gi|332529089|ref|ZP_08405053.1| integration host factor subunit alpha [Hylemonella gracilis ATCC 19624] gi|332041312|gb|EGI77674.1| integration host factor subunit alpha [Hylemonella gracilis ATCC 19624] Length = 107 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 56/93 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + ++ GL++++S + F+ I + G+ +KIS F F ++ K + Sbjct: 10 TPALTKAHLAELLFEQIGLNKRESKDMIDAFFDLIAERLTEGQDVKISGFGNFQIRTKAA 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T + + I+ R+VV F AS LK++I Sbjct: 70 RPGRNPRTGEAIPIEARKVVTFHASHKLKEQIQ 102 >gi|167621360|ref|ZP_02389991.1| Bacterial nucleoid DNA-binding protein [Burkholderia thailandensis Bt4] Length = 90 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ E GL++ DS + + I + +G + ++ F F V + +R G Sbjct: 1 MNKADLINHVAAETGLTKADSGFALEAVLEGITKALRKGGTVTLTGFGVFSVGARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T +E+KI + FKA LK + Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90 >gi|39933146|ref|NP_945422.1| integration host factor subunit beta [Rhodopseudomonas palustris CGA009] gi|192288502|ref|YP_001989107.1| integration host factor subunit beta [Rhodopseudomonas palustris TIE-1] gi|81698457|sp|Q6NDN9|IHFB_RHOPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709804|sp|B3Q602|IHFB_RHOPT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|39652771|emb|CAE25510.1| integration host factor beta chain [Rhodopseudomonas palustris CGA009] gi|192282251|gb|ACE98631.1| integration host factor, beta subunit [Rhodopseudomonas palustris TIE-1] Length = 104 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 GRN +T V +D + V FK +++R+ D G D Sbjct: 61 GRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRD-SGDDAPTSDTA 104 >gi|146307010|ref|YP_001187475.1| integration host factor subunit alpha [Pseudomonas mendocina ymp] gi|166918516|sp|A4XTS7|IHFA_PSEMY RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|145575211|gb|ABP84743.1| integration host factor, alpha subunit [Pseudomonas mendocina ymp] Length = 100 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + +E GL+++++ V F EI + E +K+S F F ++ K R Sbjct: 3 ALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKARVE 93 >gi|226324137|ref|ZP_03799655.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758] gi|225207686|gb|EEG90040.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758] Length = 91 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ +S+KD+ + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAVAEQADISKKDAEKVLKAFVDVVTEEMKKGEKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI+ + FKA LK + Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAVN 90 >gi|167759629|ref|ZP_02431756.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC 35704] gi|167662755|gb|EDS06885.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC 35704] Length = 91 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + LS+KDS + + + + D + +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIADQAELSKKDSEKALKAFIDVVTDELKKDHKVQLVGFGTFEVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI+ + FKA LK + Sbjct: 61 RNPQTGKTMKIEACKAPKFKAGKALKDAVN 90 >gi|85373566|ref|YP_457628.1| histone-like protein [Erythrobacter litoralis HTCC2594] gi|84786649|gb|ABC62831.1| histone-like protein [Erythrobacter litoralis HTCC2594] Length = 90 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ GLS+ D++ V +F+ I + G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLISAVADASGLSKSDASGAVEGVFDSITKALSNGDEVRLVGFGTFSVARRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMTIKASNQPKFKAGKGLKDAVN 90 >gi|332525932|ref|ZP_08402073.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus JA2] gi|332109483|gb|EGJ10406.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus JA2] Length = 119 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 53/99 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T+++L + GL++++S V F + + V G+ +K+S F F++++K Sbjct: 17 TPTLTKAELADLLFDRLGLNKRESKDMVEAFFEIVHGTLVEGDDVKLSGFGNFNIRRKAP 76 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 R GRN +T + + I R VV F AS LK + D Sbjct: 77 RPGRNPRTGELIPIKARNVVTFHASHKLKAIVQGDTPAE 115 >gi|75674257|ref|YP_316678.1| integration host factor subunit beta [Nitrobacter winogradskyi Nb-255] gi|123759426|sp|Q3SWL5|IHFB_NITWN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|74419127|gb|ABA03326.1| integration host factor, beta subunit [Nitrobacter winogradskyi Nb-255] Length = 101 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T + V +D + V FK +++R+ D + N Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRDNATSEAN 100 >gi|110680344|ref|YP_683351.1| integration host factor subunit alpha [Roseobacter denitrificans OCh 114] gi|109456460|gb|ABG32665.1| integration host factor, alpha subunit [Roseobacter denitrificans OCh 114] Length = 112 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 43/96 (44%), Positives = 67/96 (69%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR DL +++ +E GLSR +S + V ++ + D+ V GE +KISSF TF V+ K +R Sbjct: 16 KTLTRMDLSEAVFREVGLSRNESAQLVESVLEHLSDALVNGEQVKISSFGTFSVRDKSAR 75 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 VGRN +T +EV I+PRRV+ F+ S ++K R+ + + Sbjct: 76 VGRNPKTGEEVPINPRRVLTFRPSHLMKDRVANGNK 111 >gi|288575052|ref|ZP_06393409.1| histone family protein DNA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570793|gb|EFC92350.1| histone family protein DNA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 91 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+++++K LS+K + V+ + + ++ V+GE +++ F TF V+++ +R G Sbjct: 1 MTKTELIEAVAKSAELSKKAAGEAVSAVLESVEEALVKGEKVQLVGFGTFEVRERAARTG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94 RN Q ++ ++I ++V VF+ LK R+ Sbjct: 61 RNPQDPEKTIEIPAKKVPVFRPGKALKDRVN 91 >gi|84387194|ref|ZP_00990216.1| integration host factor alpha subunit [Vibrio splendidus 12B01] gi|86146820|ref|ZP_01065140.1| integration host factor alpha subunit [Vibrio sp. MED222] gi|148975883|ref|ZP_01812672.1| integration host factor subunit alpha [Vibrionales bacterium SWAT-3] gi|218709710|ref|YP_002417331.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32] gi|254803524|sp|B7VPF6|IHFA_VIBSL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|84378055|gb|EAP94916.1| integration host factor alpha subunit [Vibrio splendidus 12B01] gi|85835470|gb|EAQ53608.1| integration host factor alpha subunit [Vibrio sp. MED222] gi|145964628|gb|EDK29881.1| integration host factor subunit alpha [Vibrionales bacterium SWAT-3] gi|218322729|emb|CAV18905.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32] Length = 98 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL +++ + G S++D+ V F E+ + GE +K+S F F +++K R Sbjct: 2 ALTKADLAENLFETLGYSKRDAKETVEVFFEEVRKALENGEQVKLSGFGNFDLREKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKARVEN 93 >gi|95930400|ref|ZP_01313136.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95133440|gb|EAT15103.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 90 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +I+++ LS+ DS + + + + ++ G+ I + F TF V + +RVG Sbjct: 1 MTKTELVTAIAEKAELSKSDSEKALKAFVDTVTEALKGGDKIALVGFGTFSVGDRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT E+KI +V FKA LK + Sbjct: 61 KNPQTGAEIKIPAAKVPKFKAGKALKDAVN 90 >gi|254714182|ref|ZP_05175993.1| DNA-binding protein HRL18 [Brucella ceti M644/93/1] gi|254717617|ref|ZP_05179428.1| DNA-binding protein HRL18 [Brucella ceti M13/05/1] gi|261219453|ref|ZP_05933734.1| histone family protein DNA-binding protein [Brucella ceti M13/05/1] gi|261321949|ref|ZP_05961146.1| histone family protein DNA-binding protein [Brucella ceti M644/93/1] gi|260924542|gb|EEX91110.1| histone family protein DNA-binding protein [Brucella ceti M13/05/1] gi|261294639|gb|EEX98135.1| histone family protein DNA-binding protein [Brucella ceti M644/93/1] Length = 91 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 1 MNKNELVAAVAEKGGLTKTDAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91 >gi|190015583|ref|YP_001967304.1| DNA-binding protein HU [Bacillus cereus] gi|208702183|ref|YP_002267334.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97] gi|217956824|ref|YP_002335918.1| DNA-binding protein HU 1 [Bacillus cereus AH187] gi|229142798|ref|ZP_04271251.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] gi|116584490|gb|ABK00607.1| DNA-binding protein HU [Bacillus cereus] gi|208658038|gb|ACI30408.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97] gi|217068469|gb|ACJ82717.1| DNA-binding protein HU 1 [Bacillus cereus AH187] gi|228640666|gb|EEK97044.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26] Length = 90 Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL K I+++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTDLTKVIAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90 >gi|157146943|ref|YP_001454262.1| transcriptional regulator HU subunit beta [Citrobacter koseri ATCC BAA-895] gi|237730417|ref|ZP_04560898.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2] gi|283834241|ref|ZP_06353982.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] gi|157084148|gb|ABV13826.1| hypothetical protein CKO_02720 [Citrobacter koseri ATCC BAA-895] gi|226905956|gb|EEH91874.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2] gi|291069760|gb|EFE07869.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] Length = 90 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 61 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 90 >gi|254499149|ref|ZP_05111836.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254351628|gb|EET10476.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 92 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 52/92 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + I D+ G+ + I F +F + +R G Sbjct: 1 MNKSELVDAIASGSGLTKADASRVLETFTSTITDALKSGDQVVIPGFGSFSTGNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + ++I RV FKA LK+ + + Sbjct: 61 RNPQTGKVIEIKASRVAKFKAGKNLKEAVQEA 92 >gi|15675394|ref|NP_269568.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS] gi|21910682|ref|NP_664950.1| putative histone-like DNA-binding protein [Streptococcus pyogenes MGAS315] gi|28895628|ref|NP_801978.1| histone-like DNA-binding protein [Streptococcus pyogenes SSI-1] gi|50914589|ref|YP_060561.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394] gi|71903824|ref|YP_280627.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180] gi|71911036|ref|YP_282586.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005] gi|94988847|ref|YP_596948.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429] gi|94990748|ref|YP_598848.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270] gi|94992738|ref|YP_600837.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096] gi|94994725|ref|YP_602823.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750] gi|139473485|ref|YP_001128201.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo] gi|209559658|ref|YP_002286130.1| DNA-binding protein HU [Streptococcus pyogenes NZ131] gi|306827059|ref|ZP_07460357.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782] gi|61222559|sp|P0A3I0|DBH_STRP3 RecName: Full=DNA-binding protein HU gi|73919007|sp|Q5XB35|DBH_STRP6 RecName: Full=DNA-binding protein HU gi|73919008|sp|P0C097|DBH_STRP8 RecName: Full=DNA-binding protein HU gi|76365063|sp|P0C0H2|DBH_STRPY RecName: Full=DNA-binding protein HU gi|81175249|sp|P0C0H3|DBH_STRP1 RecName: Full=DNA-binding protein HU gi|5209328|gb|AAD40808.1|L38946_1 histone-like DNA-binding protein [Streptococcus pyogenes] gi|13622579|gb|AAK34289.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS] gi|21904884|gb|AAM79753.1| putative histone-like DNA-binding protein [Streptococcus pyogenes MGAS315] gi|28810877|dbj|BAC63811.1| putative histone-like DNA-binding protein [Streptococcus pyogenes SSI-1] gi|50903663|gb|AAT87378.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394] gi|71802919|gb|AAX72272.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180] gi|71853818|gb|AAZ51841.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005] gi|94542355|gb|ABF32404.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429] gi|94544256|gb|ABF34304.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270] gi|94546246|gb|ABF36293.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096] gi|94548233|gb|ABF38279.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750] gi|134271732|emb|CAM29965.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo] gi|209540859|gb|ACI61435.1| DNA-binding protein HU [Streptococcus pyogenes NZ131] gi|304430805|gb|EFM33816.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782] Length = 91 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FKA LK + Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91 >gi|87200378|ref|YP_497635.1| integration host factor, alpha subunit [Novosphingobium aromaticivorans DSM 12444] gi|87136059|gb|ABD26801.1| integration host factor, alpha subunit [Novosphingobium aromaticivorans DSM 12444] Length = 98 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 61/90 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +SI++ GLSR DS V ++ +CD+ G+ +KIS F TF ++ K R+ Sbjct: 6 TLTRADLAESINRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERI 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PRRV+ F+AS +LK RI Sbjct: 66 GRNPKTGIEVPITPRRVLSFRASQMLKDRI 95 >gi|39935809|ref|NP_948085.1| integration host factor subunit alpha [Rhodopseudomonas palustris CGA009] gi|192291397|ref|YP_001992002.1| integration host factor subunit alpha [Rhodopseudomonas palustris TIE-1] gi|81698181|sp|Q6N676|IHFA_RHOPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709744|sp|B3QJM1|IHFA_RHOPT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|39649662|emb|CAE28184.1| integration host factor alpha subunit [Rhodopseudomonas palustris CGA009] gi|192285146|gb|ACF01527.1| integration host factor, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 118 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 4/115 (3%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V+QKG Sbjct: 3 GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGQ 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD----MRGRKCNKDDVTSPSG 112 R+GRN +T EV I PRRV+VFK S+ILK+RI + M + +++ S SG Sbjct: 63 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGAMPMSTEESDENTAQSASG 117 >gi|110597798|ref|ZP_01386081.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340523|gb|EAT59006.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 102 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 55/98 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNVIAHRTGLTKNETESVVDCLFESIIDSLKSGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V +DP+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLK 98 >gi|89900357|ref|YP_522828.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens T118] gi|89345094|gb|ABD69297.1| histone-like DNA-binding protein [Rhodoferax ferrireducens T118] Length = 103 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL++ ++ FG L+R+D+ V + + I D+ VRG I+I F +F + + R+ Sbjct: 1 MTRSDLIEELAARFGQLTRRDAEFAVKAILDAINDALVRGHRIEIRGFGSFAINHRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN + + V I +RV+ FK L++ + Sbjct: 61 GRNPRNGESVAIPEKRVLHFKPGKALREAV 90 >gi|88798824|ref|ZP_01114407.1| DNA-binding protein HU [Reinekea sp. MED297] gi|88778587|gb|EAR09779.1| DNA-binding protein HU [Reinekea sp. MED297] Length = 90 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +S+ + R + + + + ++ G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIDAVAAAADISKASAGRALDAMVDSVTNALKEGDQVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I +V FKA LK + Sbjct: 61 RNPQTGEPIQIAAAKVPGFKAGKALKDAVN 90 >gi|189500914|ref|YP_001960384.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] gi|189496355|gb|ACE04903.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] Length = 99 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 56/98 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV +IS GL++ ++ V LF+ I DS G+ I+I F +F+++ K Sbjct: 1 MGNTTTKADLVNTISHRTGLTKHETESVVDCLFDSIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ RN +T ++V +D + V FK S K + ++ Sbjct: 61 ERLARNPRTGEKVSVDAKNVPTFKISKEFKSAVSQSLK 98 >gi|117920310|ref|YP_869502.1| integration host factor subunit alpha [Shewanella sp. ANA-3] gi|166918528|sp|A0KWC7|IHFA_SHESA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|117612642|gb|ABK48096.1| integration host factor, alpha subunit [Shewanella sp. ANA-3] Length = 98 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ G+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANAGK 98 >gi|148264666|ref|YP_001231372.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146398166|gb|ABQ26799.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] Length = 92 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 59/91 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I ++ G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVERIYEKVGFSKKESAELVETVFDLIKNTLEDGDKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I R+++ FK S +LK I + Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAINN 91 >gi|332529386|ref|ZP_08405347.1| integration host factor subunit beta [Hylemonella gracilis ATCC 19624] gi|332041184|gb|EGI77549.1| integration host factor subunit beta [Hylemonella gracilis ATCC 19624] Length = 100 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV++++ F L+ +D+ V + + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEALAARFEQLTHRDAESAVKAILDAMNDALVRGRRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN ++ + V I +RV FK L++ + + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAVDES 93 >gi|116251406|ref|YP_767244.1| integration host factor subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|123081976|sp|Q1MIS5|IHFA_RHIL3 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|115256054|emb|CAK07135.1| putative integration host factor alpha-subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 112 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARKIK 104 >gi|260596812|ref|YP_003209383.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032] gi|260215989|emb|CBA28644.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032] Length = 113 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + L + + +S G+ + + F TF V+++ +R G Sbjct: 24 VNKSQLIDKIAAGADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFAVRERAARTG 83 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 84 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 113 >gi|215778378|ref|YP_002261518.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] gi|208011423|emb|CAQ81887.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] Length = 91 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV I+ LS++++T + I ++ GE + + F TF V + +R G Sbjct: 1 MNKKDLVSHIADIADLSQQEATAALNATVESITNALKNGEEVTLIGFGTFKVNPRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++I + FKA LK+ + + Sbjct: 61 RNPKTGDTIQIAASNMPAFKAGKALKEAVNE 91 >gi|158423917|ref|YP_001525209.1| integration host factor subunit alpha [Azorhizobium caulinodans ORS 571] gi|172047953|sp|A8I5K8|IHFA_AZOC5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|158330806|dbj|BAF88291.1| integration host factor alpha subunit [Azorhizobium caulinodans ORS 571] Length = 105 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 48/94 (51%), Positives = 66/94 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TITR+DL +++ ++ GLSR +S V + EI D +GE +K+SSF +F V+ KG Sbjct: 3 GRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQ 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RVGRN +T +EV I+PRRV+VFK SSILK RI Sbjct: 63 RVGRNPKTGEEVPIEPRRVMVFKPSSILKNRING 96 >gi|259500655|ref|ZP_05743557.1| DNA-binding protein HU [Lactobacillus iners DSM 13335] gi|302191344|ref|ZP_07267598.1| DNA-binding protein HU [Lactobacillus iners AB-1] gi|309804184|ref|ZP_07698262.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d] gi|309805716|ref|ZP_07699756.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c] gi|309806743|ref|ZP_07700737.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b] gi|309809245|ref|ZP_07703114.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D] gi|312871445|ref|ZP_07731540.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a] gi|312872380|ref|ZP_07732450.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1] gi|312873981|ref|ZP_07734017.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d] gi|312875460|ref|ZP_07735463.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b] gi|315653510|ref|ZP_07906431.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195] gi|325912002|ref|ZP_08174404.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D] gi|325912845|ref|ZP_08175223.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B] gi|329921293|ref|ZP_08277731.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G] gi|259168039|gb|EEW52534.1| DNA-binding protein HU [Lactobacillus iners DSM 13335] gi|308163767|gb|EFO66036.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d] gi|308164969|gb|EFO67212.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c] gi|308166858|gb|EFO69043.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b] gi|308170358|gb|EFO72382.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D] gi|311088971|gb|EFQ47412.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b] gi|311090530|gb|EFQ48938.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d] gi|311092203|gb|EFQ50577.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1] gi|311093098|gb|EFQ51447.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a] gi|315489201|gb|EFU78842.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195] gi|325476187|gb|EGC79351.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D] gi|325477838|gb|EGC80972.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B] gi|328934585|gb|EGG31089.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G] Length = 91 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV ++ LS+K++ V +FN + ++ + E +++ F TF V+++ +R GR Sbjct: 3 NKADLVSLVASNTKLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FK LK+ + Sbjct: 63 NPQTGAEIEIPASKVPAFKPGKALKEAVK 91 >gi|146307081|ref|YP_001187546.1| nucleoid protein HU beta subunit [Pseudomonas mendocina ymp] gi|330503120|ref|YP_004379989.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01] gi|145575282|gb|ABP84814.1| bacterial nucleoid protein HU beta subunit [Pseudomonas mendocina ymp] gi|328917406|gb|AEB58237.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01] Length = 90 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I ++ FKA LK + Sbjct: 61 RNPQTGKPISIAAAKIPGFKAGKALKDAVN 90 >gi|104780674|ref|YP_607172.1| integration host factor subunit beta [Pseudomonas entomophila L48] gi|123380995|sp|Q1ID97|IHFB_PSEE4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|95109661|emb|CAK14362.1| integration host factor (IHF),beta subunit, site specific recombination [Pseudomonas entomophila L48] Length = 98 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIDRIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T Q V ++ + V FK L+ R+ ++ Sbjct: 61 GRNPKTGQSVSLEGKYVPHFKPGKELRDRVNEEEH 95 >gi|58038600|ref|YP_190564.1| integration host factor alpha-subunit [Gluconobacter oxydans 621H] gi|58001014|gb|AAW59908.1| Integration host factor alpha-subunit [Gluconobacter oxydans 621H] Length = 108 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 1/102 (0%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+TR++LV+ + GLSR DS+ + +L I D GE++K+S F TF V+QKG Sbjct: 1 MS-TVTRANLVEHLYSRVGLSRHDSSMILESLLGVISDRLEAGESVKLSGFGTFSVRQKG 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 R+GRN +T EV I PR V+VF+ S +L+ R+ G Sbjct: 60 ERIGRNPKTGVEVPILPRAVLVFRPSQLLRDRMNGSDNGAAA 101 >gi|300722785|ref|YP_003712076.1| integration host factor (IHF) subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297629293|emb|CBJ89892.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Xenorhabdus nematophila ATCC 19061] Length = 98 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGISKRDAKDLVEIFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRVEKALP 96 >gi|163943398|ref|YP_001642628.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] gi|163865595|gb|ABY46653.1| histone family protein DNA-binding protein [Bacillus weihenstephanensis KBAB4] Length = 90 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ L + I ++ G+ ++ F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQALLDTITNALANGDKVQTLGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90 >gi|163868458|ref|YP_001609667.1| integration host factor subunit alpha [Bartonella tribocorum CIP 105476] gi|189044693|sp|A9IVB2|IHFA_BART1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|161018114|emb|CAK01672.1| integration host factor alpha subunit [Bartonella tribocorum CIP 105476] Length = 107 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 53/103 (51%), Positives = 72/103 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + K+ GLS +S V + +EIC+S VRGEA+K+SSFATF V+ K Sbjct: 3 SKTVTRADLASVVCKKVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R+GRN +T E I PRRVV FKA++ILK+RI+D R ++ Sbjct: 63 RIGRNPKTGVEAPIPPRRVVTFKAANILKQRILDSHRAKQKKD 105 >gi|146282421|ref|YP_001172574.1| DNA-binding protein HU [Pseudomonas stutzeri A1501] gi|145570626|gb|ABP79732.1| DNA-binding protein HU [Pseudomonas stutzeri A1501] gi|327480676|gb|AEA83986.1| DNA-binding protein HU [Pseudomonas stutzeri DSM 4166] Length = 90 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I ++ FKA LK + Sbjct: 61 RNPQTGKPINIAAAKIPGFKAGKALKDAVN 90 >gi|240948534|ref|ZP_04752907.1| DNA-binding protein HU [Actinobacillus minor NM305] gi|257464750|ref|ZP_05629121.1| DNA-binding protein HU [Actinobacillus minor 202] gi|240297042|gb|EER47613.1| DNA-binding protein HU [Actinobacillus minor NM305] gi|257450410|gb|EEV24453.1| DNA-binding protein HU [Actinobacillus minor 202] Length = 90 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + LS+KD+ + + +S G+ +++ F TF V ++ +R G Sbjct: 1 MNKSELIDAIAAKAELSKKDAKAALEATLEAVSESLKAGDTVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI ++ F A LK + Sbjct: 61 RNPRTGEEIKIAAAKIPAFVAGKALKDLVK 90 >gi|52842083|ref|YP_095882.1| hypothetical protein lpg1858 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629194|gb|AAU27935.1| HupB DNA binding protein HU-beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 100 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 51/95 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +S+LV +I+ GL++ D++R + T + D +G+ + I F +F + + Sbjct: 6 GEKMNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSA 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QT + ++I RV FKA LK+ + Sbjct: 66 RTGRNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 100 >gi|50086053|ref|YP_047563.1| integration host factor subunit alpha [Acinetobacter sp. ADP1] gi|81695762|sp|Q6F874|IHFA_ACIAD RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49532029|emb|CAG69741.1| integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Acinetobacter sp. ADP1] Length = 97 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R Sbjct: 3 ALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I RRVV F+A ++R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFRAGQKFRQRV 92 >gi|15965011|ref|NP_385364.1| histone-like protein [Sinorhizobium meliloti 1021] gi|150396098|ref|YP_001326565.1| histone family protein DNA-binding protein [Sinorhizobium medicae WSM419] gi|307301083|ref|ZP_07580852.1| histone family protein DNA-binding protein [Sinorhizobium meliloti BL225C] gi|307317817|ref|ZP_07597255.1| histone family protein DNA-binding protein [Sinorhizobium meliloti AK83] gi|544140|sp|P02344|DBH_RHIME RecName: Full=DNA-binding protein HRm gi|6175842|gb|AAF05301.1|AF167159_2 histone-like protein [Sinorhizobium meliloti] gi|15074190|emb|CAC45837.1| DNA-binding protein HU [Sinorhizobium meliloti 1021] gi|150027613|gb|ABR59730.1| histone family protein DNA-binding protein [Sinorhizobium medicae WSM419] gi|306896579|gb|EFN27327.1| histone family protein DNA-binding protein [Sinorhizobium meliloti AK83] gi|306904038|gb|EFN34624.1| histone family protein DNA-binding protein [Sinorhizobium meliloti BL225C] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ + GLS+ D++ V +F I G I++ F F V ++ + G Sbjct: 1 MNKNELVAAVADKAGLSKADASSAVDAVFETIQGELKNGGDIRLVGFGNFSVSRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90 >gi|319784144|ref|YP_004143620.1| integration host factor subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170032|gb|ADV13570.1| integration host factor, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 107 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 49/103 (47%), Positives = 73/103 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V + +EIC++ VRGE +K+SSFATFHV+ K Sbjct: 3 GKTLTRADLAEAVYRKVGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R+GRN +T +EV I PRRV+ FK+S++LK RI+ + K Sbjct: 63 RIGRNPKTGEEVPILPRRVMTFKSSNVLKSRILRSHQSGKAKS 105 >gi|48696914|ref|YP_024677.1| gp04 [Burkholderia phage BcepMu] gi|197295397|ref|YP_002153938.1| HU DNA-binding protein [Burkholderia cenocepacia J2315] gi|44829477|gb|AAS47844.1| gp04 [Burkholderia phage BcepMu] gi|195944876|emb|CAR57482.1| HU DNA-binding protein [Burkholderia cenocepacia J2315] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++ E G+++ DS + + I S +G+ + ++ F F V + +R G Sbjct: 1 MNKSDLINHVAAETGMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T +E+KI + FKA LK + Sbjct: 61 RNPATGEEIKIPASKAPKFKAGKGLKDAVK 90 >gi|110597679|ref|ZP_01385964.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340799|gb|EAT59276.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 91 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+++ L++ D+ R V N + S +G+ + + F TF + R G Sbjct: 1 MSKAELVEKIAEQANLTKVDAERAVNAFINVVTGSLKQGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + I ++VV FK LK+ + Sbjct: 61 RNPQTGAAITISAKKVVKFKPGKALKEEV 89 >gi|75675600|ref|YP_318021.1| integration host factor, alpha subunit [Nitrobacter winogradskyi Nb-255] gi|123773269|sp|Q3SSS2|IHFA_NITWN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|74420470|gb|ABA04669.1| integration host factor, alpha subunit [Nitrobacter winogradskyi Nb-255] Length = 106 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 50/102 (49%), Positives = 71/102 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ K+ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T EV I PRRV+VFK S+ILK+RI + G K + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGGKTD 106 >gi|307709231|ref|ZP_07645690.1| DNA-binding protein [Streptococcus mitis SK564] gi|307620177|gb|EFN99294.1| DNA-binding protein [Streptococcus mitis SK564] Length = 91 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFSAVADYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91 >gi|241204022|ref|YP_002975118.1| integration host factor subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857912|gb|ACS55579.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 112 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKSHVARKIK 104 >gi|163868074|ref|YP_001609278.1| DNA-binding protein [Bartonella tribocorum CIP 105476] gi|240850277|ref|YP_002971670.1| DNA-binding protein [Bartonella grahamii as4aup] gi|161017725|emb|CAK01283.1| DNA-binding protein [Bartonella tribocorum CIP 105476] gi|240267400|gb|ACS50988.1| DNA-binding protein [Bartonella grahamii as4aup] Length = 92 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV S++++ G+S+ + V + ++ G +++ F +F V + + G Sbjct: 1 MNKSELVSSVAEKAGVSKAQAGAVVDAFMASVTEALASGGDVRLPGFGSFEVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + Sbjct: 61 RNPSTGAEIDIPARSVPKFSAGKSLKEAVNK 91 >gi|239906700|ref|YP_002953441.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239796566|dbj|BAH75555.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+++ GL++ ++ R + I ++ V I ++ F TF V ++ +R G Sbjct: 1 MTKADLVGKIAEKTGLTKANAERALNAFIEAIEETLVGEGKITLTGFGTFMVDERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+ I +VV F+ +LK I Sbjct: 61 RNPRTGAEINIPASKVVKFRPGKLLKDAIQ 90 >gi|226944450|ref|YP_002799523.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226719377|gb|ACO78548.1| histone-like bacterial DNA-binding protein [Azotobacter vinelandii DJ] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I+ ++ FKA LK + Sbjct: 61 RNPQTGKPINIEAAKIPGFKAGKALKDAVN 90 >gi|92117139|ref|YP_576868.1| integration host factor subunit alpha [Nitrobacter hamburgensis X14] gi|123265314|sp|Q1QMY9|IHFA_NITHX RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91800033|gb|ABE62408.1| integration host factor, alpha subunit [Nitrobacter hamburgensis X14] Length = 110 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 70/102 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ K+ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T EV I PRRV+VFK S+ILK+RI + G + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINGNSNGNGAD 106 >gi|15597001|ref|NP_250495.1| DNA-binding protein HU [Pseudomonas aeruginosa PAO1] gi|116049754|ref|YP_791439.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14] gi|152988765|ref|YP_001348851.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7] gi|218892242|ref|YP_002441109.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58] gi|254234898|ref|ZP_04928221.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719] gi|254240197|ref|ZP_04933519.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192] gi|296389805|ref|ZP_06879280.1| DNA-binding protein HU [Pseudomonas aeruginosa PAb1] gi|313110501|ref|ZP_07796386.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016] gi|12643997|sp|P05384|DBHB_PSEAE RecName: Full=DNA-binding protein HU-beta gi|9947787|gb|AAG05193.1|AE004606_7 DNA-binding protein HU [Pseudomonas aeruginosa PAO1] gi|115584975|gb|ABJ10990.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14] gi|126166829|gb|EAZ52340.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719] gi|126193575|gb|EAZ57638.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192] gi|150963923|gb|ABR85948.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7] gi|218772468|emb|CAW28250.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58] gi|310882888|gb|EFQ41482.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI ++ FKA LK + Sbjct: 61 RNPQTGKPIKIAAAKIPGFKAGKALKDAVN 90 >gi|294677449|ref|YP_003578064.1| integration host factor subunit alpha [Rhodobacter capsulatus SB 1003] gi|294476269|gb|ADE85657.1| integration host factor, alpha subunit [Rhodobacter capsulatus SB 1003] Length = 100 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 47/97 (48%), Positives = 68/97 (70%), Gaps = 1/97 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S + V T+ + D+ VRGE +KISSF TF V+ K Sbjct: 1 MSEKTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 SR+GRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 61 TSRMGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAEG 97 >gi|242241106|ref|YP_002989287.1| transcriptional regulator HU subunit alpha [Dickeya dadantii Ech703] gi|242133163|gb|ACS87465.1| histone family protein DNA-binding protein [Dickeya dadantii Ech703] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F A LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVAGKALKDAVK 90 >gi|225023874|ref|ZP_03713066.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC 23834] gi|224943348|gb|EEG24557.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC 23834] Length = 146 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+KE +S+ + + + + + +G+ + + F TF+V ++ R G Sbjct: 58 VNKSELIEAIAKEADISKAAAGKALDGFTKAVTTALKKGDTVTLVGFGTFYVGERAERKG 117 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +E+ I + F+A LK + Sbjct: 118 RNPQTGKELIIPAAKSPKFRAGKALKDAL 146 >gi|266619816|ref|ZP_06112751.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479] gi|288868604|gb|EFD00903.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479] Length = 91 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V G I++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVSEELVNGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + + I + FKA LK + Sbjct: 61 RNPKSGEVMNIPASKTPKFKAGKALKDMVN 90 >gi|14194654|sp|Q9LA96|DBHA_AERHY RecName: Full=DNA-binding protein HU-alpha Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +I+ + LS+ + + + N I S G+A+++ F TF V + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V F A LK + Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >gi|103486291|ref|YP_615852.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] gi|98976368|gb|ABF52519.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +++ GL++ D+++ V +F+ I + +G +++ F TF V ++ + G Sbjct: 1 MNKQDLIAAVADSSGLTKGDASKAVEAVFDAITGALKKGGEVRLVGFGTFAVSKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIAASNQPKFKAGKALKDAVN 90 >gi|91787670|ref|YP_548622.1| integration host factor subunit beta [Polaromonas sp. JS666] gi|91696895|gb|ABE43724.1| integration host factor, beta subunit [Polaromonas sp. JS666] Length = 104 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ L+ +D+ V T+ + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEELAARFSQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|300703991|ref|YP_003745593.1| DNA-binding protein hu-beta, transcriptional regulator subunit beta [Ralstonia solanacearum CFBP2957] gi|299071654|emb|CBJ42978.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum CFBP2957] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + GL + D+ R + + + I + G + ++ F +F V + +R+G Sbjct: 1 MNKAVLIAHIADQAGLKKTDANRALDAVLDGIRSTLADGGTVSLTGFGSFSVGARPARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +EV+I VV FKA S LK + Sbjct: 61 RNPRTGEEVEIAASHVVKFKAGSDLKAAVN 90 >gi|294012154|ref|YP_003545614.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S] gi|292675484|dbj|BAI97002.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S] Length = 90 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++++ GLS+ D+++ V +F+ I + +G+ +++ F TF V Q+ + G Sbjct: 1 MNKQDLISAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSVN 90 >gi|114771803|ref|ZP_01449196.1| integration host factor, alpha subunit [alpha proteobacterium HTCC2255] gi|114547619|gb|EAU50510.1| integration host factor, alpha subunit [alpha proteobacterium HTCC2255] Length = 99 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 41/92 (44%), Positives = 66/92 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++T+TR DL +++ +E GLSR +S V ++ I D+ VRGE +KISSF TF+++ K + Sbjct: 3 NETLTRMDLAEAVFEEVGLSRNESADLVESVLQHISDALVRGENVKISSFGTFNIRDKNA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T +EV I+PRRV+ F+ S +K ++ Sbjct: 63 RIGRNPKTGEEVPINPRRVLSFRPSHTMKDKV 94 >gi|24373647|ref|NP_717690.1| integration host factor, alpha subunit [Shewanella oneidensis MR-1] gi|81744784|sp|Q8EF98|IHFA_SHEON RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|24347991|gb|AAN55134.1|AE015650_4 integration host factor, alpha subunit [Shewanella oneidensis MR-1] Length = 98 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ G+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANTGK 98 >gi|310829349|ref|YP_003961706.1| histone family protein DNA-binding protein [Eubacterium limosum KIST612] gi|308741083|gb|ADO38743.1| histone family protein DNA-binding protein [Eubacterium limosum KIST612] Length = 91 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++++ GLS+KDS + + + + D+ G+ + + F TF V+++ +R G Sbjct: 1 MNKSELIAAMAEKSGLSKKDSEKALGAFMDTVVDALKDGDKVALVGFGTFDVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I + FKA K + Sbjct: 61 LNPRTKEPIEIAASKAPAFKAGKAFKDELNK 91 >gi|296284719|ref|ZP_06862717.1| histone-like protein [Citromicrobium bathyomarinum JL354] Length = 90 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ GLS+ D++ V +F+ I + G+ +++ F TF V ++ + G Sbjct: 1 MNKNELIGTVAESCGLSKSDASNAVEGVFDAIQKALANGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I FKA LK + Sbjct: 61 RNPRTGEPMEIKASNQPKFKAGKGLKDAVN 90 >gi|291551159|emb|CBL27421.1| Bacterial nucleoid DNA-binding protein [Ruminococcus torques L2-14] Length = 90 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ +S+KDS + + + + + G+ +++ F TF V ++ +R G Sbjct: 1 MNKTEFIAAVAEKAEISKKDSEKALKAFVDVVTEQLKAGDKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I + FKA LK I Sbjct: 61 RNPQTGKTMTIAACKAPKFKAGKALKDAIN 90 >gi|319787633|ref|YP_004147108.1| histone family protein DNA-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317466145|gb|ADV27877.1| histone family protein DNA-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 90 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ E +++ +++R V + N + + +G+A+ + F TF V+++ +R G Sbjct: 1 MNKTDLIDAVASEAEITKAEASRAVDAVVNSVTKALKKGDAVTLVGFGTFQVRKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI + FKA LK + Sbjct: 61 RNPKTGETIKIKASKNPAFKAGKALKDAVN 90 >gi|187934552|ref|YP_001884411.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B] gi|188590511|ref|YP_001919603.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43] gi|251781035|ref|ZP_04823955.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187722705|gb|ACD23926.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B] gi|188500792|gb|ACD53928.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43] gi|243085350|gb|EES51240.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 92 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + + ++ GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALESGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I V VFK K ++ + Sbjct: 61 RNPRTKEVINIPATTVPVFKPGKEFKDKVNN 91 >gi|126215724|sp|Q6MMJ0|IHFA_BDEBA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Length = 110 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 59/96 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+++ ++ G S+K+++ V +F+ + GE +KIS F F V+ K R+G Sbjct: 1 MTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN QT +++KI RRV+ F+ S +LK + + Sbjct: 61 RNPQTGEQIKISARRVLTFRPSQVLKAMLNGEEYAH 96 >gi|315499364|ref|YP_004088168.1| integration host factor, beta subunit [Asticcacaulis excentricus CB 48] gi|315417376|gb|ADU14017.1| integration host factor, beta subunit [Asticcacaulis excentricus CB 48] Length = 98 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E +++KD R V + + ++ +G +++ F F V+ + +RV Sbjct: 1 MLKSELIERLASEYPHMTQKDVERIVNLILESMIETLEKGGRVELRGFGAFSVRSRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + + V FK+ L++R+ Sbjct: 61 GRNPRTGEAVSVPAKHVPFFKSGKELRERLN 91 >gi|168335347|ref|ZP_02693443.1| Bacterial nucleoid DNA-binding protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 93 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S++++ GL++KD+ + + + D G I++ F TF V + +RVG Sbjct: 1 MNKTELVASMAEKSGLTKKDTEKALKAFEESVMDELKSGGKIQLVGFGTFEVTNRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+E+ I V FKA LK + Sbjct: 61 RNPKTNEEIHIPESNVPKFKAGKALKDMVN 90 >gi|312865869|ref|ZP_07726090.1| DNA-binding protein HU-alpha [Streptococcus downei F0415] gi|311098273|gb|EFQ56496.1| DNA-binding protein HU-alpha [Streptococcus downei F0415] Length = 91 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FKA LK + Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >gi|114706456|ref|ZP_01439358.1| integration host factor beta subunit [Fulvimarina pelagi HTCC2506] gi|114538317|gb|EAU41439.1| integration host factor beta subunit [Fulvimarina pelagi HTCC2506] Length = 93 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ +++ F F VK + R Sbjct: 1 MIKSELVQVIANRNPHLYQRDVEMIVNAIFDEITEALCESNRVELRGFGAFSVKNRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ + V FK L++R+ + Sbjct: 61 GRNPRTGEAVEVSEKWVPFFKPGKELRERLNEA 93 >gi|251782882|ref|YP_002997185.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391512|dbj|BAH81971.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322412211|gb|EFY03119.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323127685|gb|ADX24982.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 91 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FKA LK + Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91 >gi|229170573|ref|ZP_04298221.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228612922|gb|EEK70099.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 93 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 53/92 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ + + I ++ E ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKMVAEKAELTQKDAAVATQAVLDAITNALANEEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I +V FKA LK + Sbjct: 62 TGRNPQTGEEMQIAASKVPAFKAGKELKAAVK 93 >gi|144901346|emb|CAM78210.1| DNA-binding protein HU [Magnetospirillum gryphiswaldense MSR-1] Length = 92 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GL++ DS + V +F I + G+ +++ F +F V + + G Sbjct: 1 MNKADLVSRVAELSGLTKADSEKAVDGVFEAITAALKGGDEVRLVGFGSFSVASRAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++++I + F A LK+ + Sbjct: 61 RNPRTGEKIQIPASKQPKFSAGKGLKEAVNG 91 >gi|85716272|ref|ZP_01047246.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A] gi|85696944|gb|EAQ34828.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A] Length = 106 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 50/102 (49%), Positives = 71/102 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ K+ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYKKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T EV I PRRV+VFK S+ILK+RI + G K + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINSNGAGAKTD 106 >gi|157369341|ref|YP_001477330.1| histone family protein DNA-binding protein [Serratia proteamaculans 568] gi|157321105|gb|ABV40202.1| histone family protein DNA-binding protein [Serratia proteamaculans 568] Length = 101 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F +F V+++ +R G Sbjct: 12 VNKSQLIDKIAAGADISKAAAGRALDAVIASVTDSLKEGDDVALVGFGSFTVRERSARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V F+A LK + Sbjct: 72 RNPQTGKEIKIAAAKVPAFRAGKALKDAVN 101 >gi|329117127|ref|ZP_08245844.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020] gi|326907532|gb|EGE54446.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020] Length = 91 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEAFLSEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FKA LK + Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91 >gi|317051936|ref|YP_004113052.1| histone family protein DNA-binding protein [Desulfurispirillum indicum S5] gi|316947020|gb|ADU66496.1| histone family protein DNA-binding protein [Desulfurispirillum indicum S5] Length = 93 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV+ I ++ +++K + V LF I D+ G+ +++ F +F +++G R Sbjct: 1 MTKADLVERICEKTDSVNKKQAEAVVNGLFECIIDALEEGDKVELRGFGSFKTRERGPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +V + +RV FK L++R+ + Sbjct: 61 GRNPKTGDKVSVPSKRVPYFKPGKELRERVDNA 93 >gi|15964139|ref|NP_384492.1| integration host factor subunit beta [Sinorhizobium meliloti 1021] gi|307301284|ref|ZP_07581046.1| integration host factor, beta subunit [Sinorhizobium meliloti BL225C] gi|307317955|ref|ZP_07597392.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83] gi|21362611|sp|Q92SJ7|IHFB_RHIME RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|15073315|emb|CAC41823.1| Probable integration host factor beta-subunit [Sinorhizobium meliloti 1021] gi|306896357|gb|EFN27106.1| integration host factor, beta subunit [Sinorhizobium meliloti AK83] gi|306903740|gb|EFN34327.1| integration host factor, beta subunit [Sinorhizobium meliloti BL225C] Length = 103 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T V ++ + V FK L++R+ M +DD Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDNNNGEDD 103 >gi|316931463|ref|YP_004106445.1| integration host factor subunit beta [Rhodopseudomonas palustris DX-1] gi|315599177|gb|ADU41712.1| integration host factor, beta subunit [Rhodopseudomonas palustris DX-1] Length = 104 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V ++ + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVEQKTVPFFKTGKEMRERLNRD 93 >gi|260774395|ref|ZP_05883309.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14] gi|260610522|gb|EEX35727.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14] Length = 90 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKVQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I V F A LK + Sbjct: 61 RNPKTGEEIQISAANVPAFVAGKALKDSLK 90 >gi|320539031|ref|ZP_08038706.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Serratia symbiotica str. Tucson] gi|320030964|gb|EFW12968.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Serratia symbiotica str. Tucson] Length = 98 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 55/93 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKDLVELFFEEVRRALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F++ LK R+ + Sbjct: 62 GRNPKTGEDIPITARRVVTFRSGQKLKSRVENA 94 >gi|291523826|emb|CBK89413.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale DSM 17629] gi|291528706|emb|CBK94292.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale M104/1] Length = 90 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++++ G+S+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKADLVAAMAEKAGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I + FKA LK + Sbjct: 61 RNPQTGAEMTIAASKAPKFKAGKALKDSLN 90 >gi|256060895|ref|ZP_05451053.1| integration host factor subunit alpha [Brucella neotomae 5K33] gi|261324891|ref|ZP_05964088.1| integration host factor subunit alpha [Brucella neotomae 5K33] gi|261300871|gb|EEY04368.1| integration host factor subunit alpha [Brucella neotomae 5K33] Length = 107 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 74/102 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S + + +E+CD+ V GE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAEAVYRKVGLSRTESAALIEMILDEVCDAIVNGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ + + R+ Sbjct: 63 RIGRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQGK 104 >gi|193213379|ref|YP_001999332.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] gi|193086856|gb|ACF12132.1| histone family protein DNA-binding protein [Chlorobaculum parvum NCIB 8327] Length = 100 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 56/100 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T T++DLV I++ GL++ ++ V LF I DS G+ I+I F +F+++ K Sbjct: 1 MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 R RN +T ++V + P+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVGPKNVPTFKISKEFKHAVSESLKAE 100 >gi|260770646|ref|ZP_05879577.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972] gi|260614372|gb|EEX39560.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972] gi|315178408|gb|ADT85322.1| DNA-binding protein HU [Vibrio furnissii NCTC 11218] Length = 90 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLSKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI V F A LK + Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDSVK 90 >gi|62464771|ref|YP_220382.1| hypothetical protein p49879_1p05 [Leptospirillum ferrooxidans] gi|60739072|gb|AAX36038.1| ORF98 [Leptospirillum ferrooxidans] Length = 98 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+S+S LS+KD + I DS +GE + + F TF +K +R G Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I R V F A L++ I Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89 >gi|238026976|ref|YP_002911207.1| putative dna-binding protein hu-beta [Burkholderia glumae BGR1] gi|237876170|gb|ACR28503.1| Probable dna-binding protein hu-beta [Burkholderia glumae BGR1] Length = 90 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I++E LS+ + R + L + + G ++ ++ F TF V ++ +R G Sbjct: 1 MNKTDLIDHIAREADLSKASAGRALDALIGGVMQALESGGSVTLAGFGTFEVGERIARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I+ RV F+A LK + Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALKDALN 90 >gi|304440463|ref|ZP_07400352.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371215|gb|EFM24832.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640] Length = 92 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ L++KD+ + + D+ GE +++ F TF V+++ +R G Sbjct: 1 MNKAELIANIAEKSNLTKKDAEMALNGFLTTVQDALASGEKVQLVGFGTFEVRERKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E +KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92 >gi|291548185|emb|CBL21293.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. SR1/5] Length = 92 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++K+ LS+KD + + + + D +GE I++ F TF V + +R G Sbjct: 1 MNKTELVAAMAKDTNLSKKDVEAVLKSFIDVVTDELKKGEKIQLVGFGTFEVSTRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I+ + FKA LK + Sbjct: 61 RNPQTGETMTIEASKSPKFKAGKALKDVVNG 91 >gi|160878293|ref|YP_001557261.1| histone family protein DNA-binding protein [Clostridium phytofermentans ISDg] gi|160426959|gb|ABX40522.1| histone family protein DNA-binding protein [Clostridium phytofermentans ISDg] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ LS+KDS + + + + + +GE +++ F TF V + +R G Sbjct: 1 MNKAELVAAIAEKTELSKKDSEKALKAFIDVVTEELTKGEKVQLVGFGTFEVSARPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT Q + I + FKA LK I Sbjct: 61 RNPQTKQTITIAASKAPKFKAGKALKDVINK 91 >gi|291530746|emb|CBK96331.1| bacterial nucleoid protein Hbs [Eubacterium siraeum 70/3] gi|291557742|emb|CBL34859.1| bacterial nucleoid protein Hbs [Eubacterium siraeum V10Sc8a] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ L++KD+ + ++ L I ++ +GE I++ F TF V+++ +R G Sbjct: 1 MTKAELVTMVAEKADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T ++KI +V FKA S LK + Sbjct: 61 VNPRTGDKIKIAASKVPAFKAGSALKDAVAK 91 >gi|152979637|ref|YP_001345266.1| histone family protein DNA-binding protein [Actinobacillus succinogenes 130Z] gi|150841360|gb|ABR75331.1| histone family protein DNA-binding protein [Actinobacillus succinogenes 130Z] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++KD+ + + I S +G+A+++ F TF V ++ +R+G Sbjct: 1 MNKTDLIDAIASAASLTKKDAKAALEATLDAITASLKKGDAVQLIGFGTFKVNERKARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E+KI + F A LK + Sbjct: 61 RNPQTGAEIKIAASKAPAFVAGKALKDEVNG 91 >gi|149920506|ref|ZP_01908974.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1] gi|149818687|gb|EDM78132.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1] Length = 128 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L++ +++E GL++ + V T+F + + V G+ I+I F +F V+Q + G Sbjct: 1 MTKSELIERVAQESGLTKGRAEMVVNTIFESMTHALVAGDGIEIRGFGSFTVRQYKAYEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V + P+R+ FK L++R+ Sbjct: 61 RNPRTGDVVHVAPKRLPFFKVGKELRERVNG 91 >gi|157375731|ref|YP_001474331.1| integration host factor, alpha subunit [Shewanella sediminis HAW-EB3] gi|157962289|ref|YP_001502323.1| integration host factor subunit alpha [Shewanella pealeana ATCC 700345] gi|167623744|ref|YP_001674038.1| integration host factor subunit alpha [Shewanella halifaxensis HAW-EB4] gi|212635793|ref|YP_002312318.1| integration host factor subunit alpha [Shewanella piezotolerans WP3] gi|189045030|sp|B0TQY4|IHFA_SHEHH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189045031|sp|A8H5F1|IHFA_SHEPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189045032|sp|A8FWI0|IHFA_SHESH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709753|sp|B8CR59|IHFA_SHEPW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|157318105|gb|ABV37203.1| integration host factor, alpha subunit [Shewanella sediminis HAW-EB3] gi|157847289|gb|ABV87788.1| integration host factor, alpha subunit [Shewanella pealeana ATCC 700345] gi|167353766|gb|ABZ76379.1| integration host factor, alpha subunit [Shewanella halifaxensis HAW-EB4] gi|212557277|gb|ACJ29731.1| Integration host factor, alpha subunit [Shewanella piezotolerans WP3] Length = 98 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ + + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAKK 98 >gi|88799977|ref|ZP_01115548.1| integration host factor alpha subunit [Reinekea sp. MED297] gi|88777255|gb|EAR08459.1| integration host factor alpha subunit [Reinekea sp. MED297] Length = 100 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + +E GL+++++ V F EI +S V E +K+S F F ++ K R Sbjct: 2 ALTKAEMADRLYEELGLNKREAKEMVEIFFEEIRESLVHNEQVKLSGFGNFDLRDKRQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T +E+ I RRVV F+ LK Sbjct: 62 GRNPKTGEEIPISARRVVTFRPGQKLK 88 >gi|120598987|ref|YP_963561.1| integration host factor subunit alpha [Shewanella sp. W3-18-1] gi|126174101|ref|YP_001050250.1| integration host factor subunit alpha [Shewanella baltica OS155] gi|146292928|ref|YP_001183352.1| integration host factor subunit alpha [Shewanella putrefaciens CN-32] gi|153000427|ref|YP_001366108.1| integration host factor subunit alpha [Shewanella baltica OS185] gi|160875024|ref|YP_001554340.1| integration host factor subunit alpha [Shewanella baltica OS195] gi|217973584|ref|YP_002358335.1| integration host factor subunit alpha [Shewanella baltica OS223] gi|304411359|ref|ZP_07392973.1| integration host factor, alpha subunit [Shewanella baltica OS183] gi|307305319|ref|ZP_07585067.1| integration host factor, alpha subunit [Shewanella baltica BA175] gi|166918524|sp|A3D3R8|IHFA_SHEB5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918525|sp|A6WMK6|IHFA_SHEB8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918527|sp|A4Y6H0|IHFA_SHEPC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918529|sp|A1RK12|IHFA_SHESW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189045029|sp|A9KYZ2|IHFA_SHEB9 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803521|sp|B8E7F3|IHFA_SHEB2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120559080|gb|ABM25007.1| integration host factor, alpha subunit [Shewanella sp. W3-18-1] gi|125997306|gb|ABN61381.1| integration host factor, alpha subunit [Shewanella baltica OS155] gi|145564618|gb|ABP75553.1| integration host factor, alpha subunit [Shewanella putrefaciens CN-32] gi|151365045|gb|ABS08045.1| integration host factor, alpha subunit [Shewanella baltica OS185] gi|160860546|gb|ABX49080.1| integration host factor, alpha subunit [Shewanella baltica OS195] gi|217498719|gb|ACK46912.1| integration host factor, alpha subunit [Shewanella baltica OS223] gi|304350214|gb|EFM14618.1| integration host factor, alpha subunit [Shewanella baltica OS183] gi|306911622|gb|EFN42047.1| integration host factor, alpha subunit [Shewanella baltica BA175] gi|315267256|gb|ADT94109.1| integration host factor, alpha subunit [Shewanella baltica OS678] gi|319426543|gb|ADV54617.1| integration host factor, alpha subunit [Shewanella putrefaciens 200] Length = 98 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V + F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGMNKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ G+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANTGK 98 >gi|291521609|emb|CBK79902.1| Bacterial nucleoid DNA-binding protein [Coprococcus catus GD/7] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+ + D+ + + + + D V+GE I++ F TF V ++ R G Sbjct: 1 MNKAELVAAMAEKTGMKKNDAEKALKAFVDVVTDELVKGEKIQLVGFGTFEVSERPEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI + FKA LK I Sbjct: 61 RNPRTGETMKIAASKAPKFKAGKALKDMIN 90 >gi|78046640|ref|YP_362815.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035070|emb|CAJ22715.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ +++R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 1 MNKTELIDGVAAAADISKAEASRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 90 >gi|222056441|ref|YP_002538803.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|221565730|gb|ACM21702.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 92 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 58/91 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVERIYEKVGFSKKESAELVETVFDLIKSTLEEGDKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I R+++ FK S +LK I + Sbjct: 61 RNPQTGEEITISARKILTFKPSQVLKAAINN 91 >gi|9630187|ref|NP_046614.1| histone-like prokaryotic DNA-binding protein family [Bacillus phage SPBc2] gi|16079164|ref|NP_389988.1| HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|221310012|ref|ZP_03591859.1| hypothetical protein Bsubs1_11596 [Bacillus subtilis subsp. subtilis str. 168] gi|221314334|ref|ZP_03596139.1| hypothetical protein BsubsN3_11517 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319256|ref|ZP_03600550.1| hypothetical protein BsubsJ_11443 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323532|ref|ZP_03604826.1| hypothetical protein BsubsS_11572 [Bacillus subtilis subsp. subtilis str. SMY] gi|56405013|sp|P68573|DBH2_BACSU RecName: Full=SPBc2 prophage-derived DNA-binding protein HU 2 gi|56405014|sp|P68574|DBH2_BPSPC RecName: Full=DNA-binding protein HU 2 gi|2634525|emb|CAB14023.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025540|gb|AAC13035.1| histone-like prokaryotic DNA-binding protein family [Bacillus phage SPbeta] Length = 92 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G+S+K+ V +F+ I ++ GE + I F TF V+++ +R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + FK + LK + Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >gi|332524208|ref|ZP_08400434.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2] gi|332107543|gb|EGJ08767.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I+++ LS+ +TR + + + G+++ I+ F TF V ++ +R G Sbjct: 1 MNKTDLIAHIAQQADLSKASATRALEAALEGVQTALKNGDSVAIAGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ +V F+ LK + Sbjct: 61 RNPRTGEAIEVKAAKVPKFRPGKALKDLL 89 >gi|254420350|ref|ZP_05034074.1| integration host factor, beta subunit [Brevundimonas sp. BAL3] gi|196186527|gb|EDX81503.1| integration host factor, beta subunit [Brevundimonas sp. BAL3] Length = 117 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ + L+ + R V + ++ + G +++ F F V+ + +R+ Sbjct: 22 MIKSELIEKLAAENTHLTHAEVERLVNVILGKMTGALSEGGRVELRGFGAFSVRSRPARL 81 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ + V FK+ L++R+ Sbjct: 82 GRNPRTGETVEVPAKAVPFFKSGKELRERLNAS 114 >gi|83311122|ref|YP_421386.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82945963|dbj|BAE50827.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 117 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++ GLS+ + + F I + G+ +++ F +F V Q+ ++ G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +KI + F A LK + Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAVNG 117 >gi|300857295|ref|YP_003782279.1| putative DNA-binding protein HU [Clostridium ljungdahlii DSM 13528] gi|300437410|gb|ADK17177.1| predicted DNA-binding protein HU [Clostridium ljungdahlii DSM 13528] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+++ L++KD + + ++ +G+ +++ F TF +++ R+G Sbjct: 1 MNKSELIAGIAEKSKLTKKDVEAALKGFIESVEETLEKGDKVQLVGFGTFETRKRAERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+KI V VFKA K R+ Sbjct: 61 RNPRTKEEIKIPESTVPVFKAGKEFKDRVNK 91 >gi|227892085|ref|ZP_04009890.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] gi|227866124|gb|EEJ73545.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV I+++ G+S+K++ + + + G I++ F TF V+++ +R G Sbjct: 1 MNKSELVSVIAEKMGVSKKEAEIATNAFISTVSTALTEGRKIQLVGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ + R V VFKA LK+ + Sbjct: 61 RNPQTGKEMLLPGRNVPVFKAGKSLKEAVNK 91 >gi|83858237|ref|ZP_00951759.1| integration host factor, alpha subunit [Oceanicaulis alexandrii HTCC2633] gi|83853060|gb|EAP90912.1| integration host factor, alpha subunit [Oceanicaulis alexandrii HTCC2633] Length = 100 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 65/96 (67%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+TR+DL ++ +E GLSR +S V + + I D V GE++K+SSF +F ++ K Sbjct: 3 SNTVTRADLSDAVHREVGLSRHESAELVEAVLDMISDKLVGGESVKLSSFGSFLLRDKTG 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RVGRN +T +EV I+PRRV+VFK S +LK R+ + Sbjct: 63 RVGRNPKTGEEVPIEPRRVLVFKPSQVLKDRVDAAL 98 >gi|85711630|ref|ZP_01042687.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina baltica OS145] gi|85694490|gb|EAQ32431.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina baltica OS145] Length = 98 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L + + ++G+S++D+ V F EI GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEVLFDKYGVSKQDAKDLVEAFFEEIRSVLESGEMVKLSGFGNFELRTKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV FK K R+ + Sbjct: 62 GRNPKTGEDIPISARRVVSFKPGQKFKSRVEN 93 >gi|21230442|ref|NP_636359.1| histone-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21241841|ref|NP_641423.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306] gi|66769564|ref|YP_244326.1| histone-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|84622592|ref|YP_449964.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166710932|ref|ZP_02242139.1| histone-like protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188578368|ref|YP_001915297.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A] gi|289664181|ref|ZP_06485762.1| histone-like protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668773|ref|ZP_06489848.1| histone-like protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325914923|ref|ZP_08177255.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325927444|ref|ZP_08188691.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans 91-118] gi|21107221|gb|AAM35959.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306] gi|21112004|gb|AAM40283.1| histone-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574896|gb|AAY50306.1| histone-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|84366532|dbj|BAE67690.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522820|gb|ACD60765.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A] gi|325538816|gb|EGD10480.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325542194|gb|EGD13689.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans 91-118] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 1 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 90 >gi|288941154|ref|YP_003443394.1| histone family protein DNA-binding protein [Allochromatium vinosum DSM 180] gi|288896526|gb|ADC62362.1| histone family protein DNA-binding protein [Allochromatium vinosum DSM 180] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ +++ +S+ + R + + I + G+ + + F TF +K++ +R G Sbjct: 1 MNKSELIEKMAEAADISKAAAGRALDAFTDSIAVALKEGDTVSLIGFGTFSLKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I + FKA LK + Sbjct: 61 RNPQTGATIEIKASKTPSFKAGKALKDAVQ 90 >gi|315924899|ref|ZP_07921116.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC 23263] gi|315621798|gb|EFV01762.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC 23263] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +++++ GL +KD+ + +T + I ++ +G+ + + F TF V+ + +R G Sbjct: 1 MNKSELVAAMAEKTGLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I FKA K + Sbjct: 61 LNPRTKEPIEIKASDAPAFKAGKAFKDALNK 91 >gi|29654618|ref|NP_820310.1| integration host factor subunit alpha [Coxiella burnetii RSA 493] gi|153207449|ref|ZP_01946149.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706871|ref|YP_001424757.1| integration host factor subunit alpha [Coxiella burnetii Dugway 5J108-111] gi|161831262|ref|YP_001597169.1| integration host factor subunit alpha [Coxiella burnetii RSA 331] gi|165924056|ref|ZP_02219888.1| integration host factor, alpha subunit [Coxiella burnetii RSA 334] gi|212212299|ref|YP_002303235.1| integration host factor subunit alpha [Coxiella burnetii CbuG_Q212] gi|212218732|ref|YP_002305519.1| integration host factor subunit alpha [Coxiella burnetii CbuK_Q154] gi|81722530|sp|Q83C16|IHFA_COXBU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044697|sp|A9KGB5|IHFA_COXBN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044698|sp|A9N8J9|IHFA_COXBR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707371|sp|B6J7X5|IHFA_COXB1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707372|sp|B6IZG2|IHFA_COXB2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|29541886|gb|AAO90824.1| integration host factor alpha-subunit [Coxiella burnetii RSA 493] gi|120576580|gb|EAX33204.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356157|gb|ABS77619.1| integration host factor alpha-subunit [Coxiella burnetii Dugway 5J108-111] gi|161763129|gb|ABX78771.1| integration host factor, alpha subunit [Coxiella burnetii RSA 331] gi|165916488|gb|EDR35092.1| integration host factor, alpha subunit [Coxiella burnetii RSA 334] gi|212010709|gb|ACJ18090.1| integration host factor alpha-subunit [Coxiella burnetii CbuG_Q212] gi|212012994|gb|ACJ20374.1| integration host factor alpha-subunit [Coxiella burnetii CbuK_Q154] Length = 103 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 35/101 (34%), Positives = 61/101 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL + + GL+++++ V F EI S RGE +K+S F F+++ KG R Sbjct: 2 ALTKADLSEHLFNVVGLNKREAKDLVELFFKEISLSLERGEPVKLSGFGNFNLRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T +E+ I RRVV F+A LK R+ +++ ++ + Sbjct: 62 GRNPKTGEEIPITARRVVTFRAGHKLKSRVEKNVKPKEEGE 102 >gi|332850673|ref|ZP_08432920.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332867047|ref|ZP_08437344.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] gi|332730510|gb|EGJ61826.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150] gi|332734240|gb|EGJ65369.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K I+ L++ +T + + + I + GE + + F TF VK++ +R G Sbjct: 1 MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGEDVALIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E++I +V FKA LK+ + Sbjct: 61 RNPKTGEELQIAASKVPSFKAGKALKEAVK 90 >gi|229822881|ref|ZP_04448951.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC 51271] gi|229787694|gb|EEP23808.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC 51271] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 54/89 (60%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV+ ++ + L++KD T V LF I ++ +GE +++ F TF V+++ +R GR Sbjct: 3 NKAELVEKVAAKTNLTKKDVTATVEALFETIQETLSKGEKVQVIGFGTFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPGFKAGKALKDAVK 91 >gi|121610067|ref|YP_997874.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] gi|121554707|gb|ABM58856.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 112 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++TRSDLV+ ++ L+R D+ V + + + + VRG I+I F +F V R Sbjct: 5 SMTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +GRN ++ + V I +RV FK L++ + Sbjct: 65 MGRNPRSGEAVAIPQKRVPHFKPGKALREAVDK 97 >gi|332971083|gb|EGK10053.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+++ G+++KD V E+ + GE +++ F TF +++ R G Sbjct: 1 MNKNDLIHNIAQKSGMTKKDVETVVNGFLEEVTHALGSGEKVQLIGFGTFETRKRSGRSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I V FKA + LK+ + Sbjct: 61 RNPQTGAVIEIPESTVPAFKAGTRLKEAVK 90 >gi|227821610|ref|YP_002825580.1| DNA-binding protein HRm [Sinorhizobium fredii NGR234] gi|227340609|gb|ACP24827.1| DNA-binding protein HRm [Sinorhizobium fredii NGR234] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GLS+ D++ V +F I G I++ F F V ++ + G Sbjct: 1 MNKNELVSAVAEKAGLSKADASSAVDAVFETIQGELKSGGDIRLVGFGNFSVTRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90 >gi|331268343|ref|YP_004394835.1| histone family protein DNA-binding protein [Clostridium botulinum BKT015925] gi|329124893|gb|AEB74838.1| histone family protein DNA-binding protein [Clostridium botulinum BKT015925] Length = 92 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ + G+ +++ F TF +++ R G Sbjct: 1 MNKAELITSMAEKSQLTKKDAEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I V VFKA K+ + + Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91 >gi|260219592|emb|CBA26437.1| Integration host factor subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 118 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 56/97 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + ++ GL++++S + F+ I S V G +KIS F F ++ K Sbjct: 19 TPALTKAQLSDLLFEQIGLNKRESKDMIDAFFDLIASSLVDGTDVKISGFGNFQIRTKAP 78 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T + + I RRVV F AS LK++I D+ + Sbjct: 79 RPGRNPRTGEAIPIQARRVVTFHASHKLKEQIQDEGK 115 >gi|90419402|ref|ZP_01227312.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336339|gb|EAS50080.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 92 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++S++ LS++D++ V +F + + +G+ I++ F TF V + + G Sbjct: 1 MNKNELIAAVSEKAELSKQDASSAVDAVFETLQATMAKGDDIRLVGFGTFSVSHRAASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T EV I R V F A LK + + Sbjct: 61 RNPSTGAEVDIPARNVPKFAAGKGLKDAVNN 91 >gi|121605691|ref|YP_983020.1| integration host factor subunit beta [Polaromonas naphthalenivorans CJ2] gi|120594660|gb|ABM38099.1| integration host factor, beta subunit [Polaromonas naphthalenivorans CJ2] Length = 104 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ L+ +D+ V TL + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEELAARFSQLTHRDAEHAVKTLLDAMSDTLVRGNRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|317131350|ref|YP_004090664.1| histone family protein DNA-binding protein [Ethanoligenens harbinense YUAN-3] gi|315469329|gb|ADU25933.1| histone family protein DNA-binding protein [Ethanoligenens harbinense YUAN-3] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ ++++ GLS+KD+ + L + I +S V E +++ F TF V + +R G Sbjct: 1 MTKAELIAKVAEKSGLSKKDAEKATGALIDSIVESLVAEEKVQLVGFGTFEVHHREARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I VFKA K + Sbjct: 61 RNPRTKEEITIPASAYPVFKAGKPFKDAVSK 91 >gi|258620637|ref|ZP_05715674.1| DNA-binding protein HU [Vibrio mimicus VM573] gi|258624505|ref|ZP_05719449.1| DNA-binding protein HU [Vibrio mimicus VM603] gi|262163814|ref|ZP_06031554.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223] gi|262172622|ref|ZP_06040300.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451] gi|262404997|ref|ZP_06081549.1| DNA-binding protein HU-alpha [Vibrio sp. RC586] gi|258583202|gb|EEW08007.1| DNA-binding protein HU [Vibrio mimicus VM603] gi|258587152|gb|EEW11864.1| DNA-binding protein HU [Vibrio mimicus VM573] gi|261893698|gb|EEY39684.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451] gi|262027794|gb|EEY46459.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223] gi|262348836|gb|EEY97977.1| DNA-binding protein HU-alpha [Vibrio sp. RC586] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI V F A LK I Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAIK 90 >gi|238760269|ref|ZP_04621413.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236] gi|238701533|gb|EEP94106.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLGAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|37526554|ref|NP_929898.1| integration host factor subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|253989352|ref|YP_003040708.1| integration host factor subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|81707667|sp|Q7N3Q2|IHFA_PHOLL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|36785985|emb|CAE15037.1| integration host factor alpha chain (IHF-alpha) [Photorhabdus luminescens subsp. laumondii TTO1] gi|253780802|emb|CAQ83964.1| integration host factor subunit alpha (ihf-alpha) [Photorhabdus asymbiotica] Length = 98 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEKATP 96 >gi|14194639|sp|Q9XB22|DBH_STRDO RecName: Full=DNA-binding protein HU gi|5209330|gb|AAD40809.1|L38959_1 histone-like DNA-binding protein [Streptococcus sobrinus] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V T+F+ I +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FKA LK + Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >gi|325274292|ref|ZP_08140403.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51] gi|324100575|gb|EGB98310.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51] Length = 90 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + + + + + + + G+ + + F TF VK++ R G Sbjct: 1 MNKSELIDAIAVSADISKAAAGKALDAVIDSVTGALKAGDDVVLVGFGTFTVKERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI +V FKA LK + Sbjct: 61 RNPQTGKAIKIAAAKVPGFKAGKGLKDAVN 90 >gi|254494814|ref|ZP_01051666.2| DNA-binding protein [Polaribacter sp. MED152] gi|213690396|gb|EAQ41094.2| DNA-binding protein [Polaribacter sp. MED152] Length = 117 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ + G+S+ + + + + + + G+ + + F TF V + +R G Sbjct: 28 MNKSDLIDAMAADAGISKVAAKAALESFTDNVTSALKGGDKVALVGFGTFSVSHRAARSG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + V FKA + L + Sbjct: 88 RNPQTGKTIQIAAKNVAKFKAGAGLSDAVN 117 >gi|400045|sp|P30787|IHFA_RHOCA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|151944|gb|AAA26128.1| integration host factor [Rhodobacter capsulatus] Length = 100 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 47/96 (48%), Positives = 68/96 (70%), Gaps = 1/96 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S + V T+ + D+ VRGE +KISSF TF V+ K Sbjct: 1 MSEKTLTRMDLSEAVFREVGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR+GRN +T +EV I PRRV+ F+ S ++K R+ + Sbjct: 61 TSRMGRNPKTGEEVPISPRRVLSFRPSHLMKDRVAE 96 >gi|222153394|ref|YP_002562571.1| DNA-binding protein HU [Streptococcus uberis 0140J] gi|222114207|emb|CAR42760.1| DNA-binding protein HU [Streptococcus uberis 0140J] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F+ I +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFSAIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+KI +V FKA LK + Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >gi|71278109|ref|YP_268791.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H] gi|71143849|gb|AAZ24322.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ IS+ +++ + R + +L + + G + + F T+ V + +R G Sbjct: 1 MNKSELIAKISEGADITKASAGRALDSLIDSVTTELASGGDVALVGFGTYKVNDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAVNG 91 >gi|83591632|ref|YP_425384.1| integration host factor, subunit beta [Rhodospirillum rubrum ATCC 11170] gi|123726093|sp|Q2RXP8|IHFB_RHORT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|83574546|gb|ABC21097.1| Integration host factor, beta subunit [Rhodospirillum rubrum ATCC 11170] Length = 100 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 4/103 (3%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ I++ L ++D R V+T+F+EI D+ RG+ +++ F F VK++ +R+ Sbjct: 1 MTKSELIARIAERNPHLYQRDVERIVSTIFDEIADALARGDRVELRGFGAFSVKRRDARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V +D + FK L++ + G + DD Sbjct: 61 GRNPRTGETVDVDAKVAPYFKTGKQLRELLNG---GESESDDD 100 >gi|222085523|ref|YP_002544053.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] gi|254803507|sp|B9JCZ0|IHFA_AGRRK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|221722971|gb|ACM26127.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] Length = 112 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 53/110 (48%), Positives = 74/110 (67%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK S Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHASRKAKARPANPAS 112 >gi|329894498|ref|ZP_08270312.1| Integration host factor beta subunit [gamma proteobacterium IMCC3088] gi|328923023|gb|EGG30348.1| Integration host factor beta subunit [gamma proteobacterium IMCC3088] Length = 97 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I+ + LS KD V ++ ++ D+ G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEAIAAKQTQLSLKDVELAVKSVLEQMSDALSSGDRIEIRGFGSFSLHYREPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V ++ + V FK L++R+ + Sbjct: 61 GRNPKTGDSVDLNGKYVPHFKPGKELRERVNKGL 94 >gi|240144365|ref|ZP_04742966.1| DNA-binding protein HU [Roseburia intestinalis L1-82] gi|257203616|gb|EEV01901.1| DNA-binding protein HU [Roseburia intestinalis L1-82] gi|291535593|emb|CBL08705.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis M50/1] gi|291540838|emb|CBL13949.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis XB6B4] Length = 91 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + + + + +GE I++ F TF V ++ R G Sbjct: 1 MNKAELVAAMAEKTELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q+ +E+ I + FKA LK + Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALKDMVN 90 >gi|241764521|ref|ZP_04762541.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241366057|gb|EER60661.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 106 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++TRSDLV+ ++ L+ +D+ V TL + + D+ VRG I+I F +F V ++ R Sbjct: 5 SMTRSDLVEELAARFSQLTHRDAEFAVKTLLDAVGDALVRGHRIEIRGFGSFSVNRRPPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN ++ + V I +RV FK L++ + Sbjct: 65 MGRNPRSGEAVAIPEKRVPHFKPGKALREAV 95 >gi|23501983|ref|NP_698110.1| DNA-binding protein HU [Brucella suis 1330] gi|23347933|gb|AAN30025.1| DNA-binding protein HU [Brucella suis 1330] Length = 91 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V + + + GE +++ F F V + + G Sbjct: 1 MNKNELVAAVAEKGGLTKADAGTAVDVVLASVTAALKAGEEVRLPGFGVFSVSHRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +EV I R V F A LK + Sbjct: 61 RNPSTGKEVAIPARNVPKFSAGKGLKDAVNG 91 >gi|42523141|ref|NP_968521.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus HD100] gi|39575346|emb|CAE79514.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus HD100] Length = 123 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 60/97 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ ++ G S+K+++ V +F+ + GE +KIS F F V+ K R+ Sbjct: 13 TVTKADIVENVYQKIGFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERI 72 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN QT +++KI RRV+ F+ S +LK + + Sbjct: 73 GRNPQTGEQIKISARRVLTFRPSQVLKAMLNGEEYAH 109 >gi|194335610|ref|YP_002017404.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308087|gb|ACF42787.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 102 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 58/98 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT T++DLV I+ + GL++ ++ V +LF I DS G+ I+I F +F+++ K Sbjct: 1 MGKTTTKADLVNVIAHKTGLTKNETESVVDSLFESIIDSLKTGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V ++P+ V FK S K + + ++ Sbjct: 61 FRQARNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLK 98 >gi|261210437|ref|ZP_05924731.1| DNA-binding protein HU-alpha [Vibrio sp. RC341] gi|260840495|gb|EEX67061.1| DNA-binding protein HU-alpha [Vibrio sp. RC341] Length = 90 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLTKAQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI V F A LK I Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAIK 90 >gi|78187578|ref|YP_375621.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273] gi|78167480|gb|ABB24578.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273] Length = 102 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 56/101 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ GL++ ++ V LF I DS G I+I F +F+++ K Sbjct: 1 MGTTTTKADLVNVIAHRTGLTKNETETVVDALFESIIDSLKAGRRIEIRGFGSFNIRYKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R RN +T ++V ++P+ V FK S K+ + + ++ + Sbjct: 61 LRQARNPRTGEKVTVEPKNVPTFKISKEFKQAVSESLKSSQ 101 >gi|119775086|ref|YP_927826.1| integration host factor subunit alpha [Shewanella amazonensis SB2B] gi|166918523|sp|A1S700|IHFA_SHEAM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119767586|gb|ABM00157.1| integration host factor, alpha subunit [Shewanella amazonensis SB2B] Length = 98 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 53/97 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + + G++++ + V T F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAEHLFETLGINKRVAKEMVETFFEEIRSALESGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKSRVESSNSEK 98 >gi|254490897|ref|ZP_05104079.1| integration host factor, beta subunit [Methylophaga thiooxidans DMS010] gi|224463806|gb|EEF80073.1| integration host factor, beta subunit [Methylophaga thiooxydans DMS010] Length = 96 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ +S++ L + +D V + ++ DS +G+ I+I F +F + + RV Sbjct: 1 MTKSDLIEVLSEKQSLLNYRDVELAVKLILEQMSDSLSQGDRIEIRGFGSFTLHHRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN ++ + VK+D + V FK L+ R+ D Sbjct: 61 GRNPKSGESVKLDEKYVPHFKPGKELRDRVNDG 93 >gi|284006261|emb|CBA71497.1| integration host factor alpha-subunit [Arsenophonus nasoniae] Length = 98 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S+ ++ G+S++D+ V F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSESLFEKLGISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKSQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKGRVEK 93 >gi|239629128|ref|ZP_04672159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519274|gb|EEQ59140.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 91 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V+G +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVAEELVKGGKVQLVGFGTFEVAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + I + FKA LK + Sbjct: 61 RNPKTGNAMPIPASKTPKFKAGKALKDEVNK 91 >gi|325922711|ref|ZP_08184451.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC 19865] gi|325546828|gb|EGD17942.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC 19865] Length = 90 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +GEA+ + F TF V+++ R G Sbjct: 1 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGEAVTLVGFGTFQVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPAFKAGKALKDAVN 90 >gi|226941262|ref|YP_002796336.1| HupB1 [Laribacter hongkongensis HLHK9] gi|226716189|gb|ACO75327.1| HupB1 [Laribacter hongkongensis HLHK9] Length = 89 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + + + + + ++ +G+ + + F +F+V ++ R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+ I + F+ LK + Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >gi|189425415|ref|YP_001952592.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421674|gb|ACD96072.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 94 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 59/92 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I GLSRKD+ + ++F+ + +S GE IKIS F +F V +K +R G Sbjct: 1 MTKTDLVEKIQASIGLSRKDAAVMLESVFSIMKESLEAGETIKISGFGSFVVSRKAARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + + I+ R+V+ FK S+L+ I + Sbjct: 61 RNPQTGEAITIEARKVLTFKPGSVLRDAINGE 92 >gi|190015068|ref|YP_001966692.1| DNA-binding protein HU [Bacillus cereus] gi|190015334|ref|YP_001967017.1| DNA-binding protein HU [Bacillus cereus] gi|218848460|ref|YP_002455066.1| DNA-binding protein HU 1 [Bacillus cereus AH820] gi|228943061|ref|ZP_04105556.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975886|ref|ZP_04136415.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|71025122|gb|AAZ17499.1| HbsU-like protein [Bacillus thuringiensis] gi|116584744|gb|ABK00859.1| DNA-binding protein HU [Bacillus cereus] gi|116585015|gb|ABK01124.1| DNA-binding protein HU [Bacillus cereus] gi|218540511|gb|ACK92907.1| DNA-binding protein HU 1 [Bacillus cereus AH820] gi|228783849|gb|EEM31899.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816590|gb|EEM62720.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943313|gb|AEA19208.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis CT-43] Length = 90 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90 >gi|253681243|ref|ZP_04862041.1| DNA-binding protein HU [Clostridium botulinum D str. 1873] gi|253562481|gb|EES91932.1| DNA-binding protein HU [Clostridium botulinum D str. 1873] Length = 92 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ + G+ +++ F TF +++ R G Sbjct: 1 MNKAELITSMAEKSQLTKKDAEVALRAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I V VFKA K+ + + Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91 >gi|40062481|gb|AAR37433.1| integration host factor, beta subunit, putative [uncultured marine bacterium 105] Length = 115 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 5/107 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ +S+ L++K S V T+F I + RGE I++ F +F ++Q+ R G Sbjct: 1 MTKAELVEEVSRVSELTKKHSEVIVDTVFKSIVTALHRGEKIELRGFGSFRLRQREPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN +T V + P++V FK LK+ I R+ + + PS Sbjct: 61 RNPKTGDRVDVPPKKVPYFKPGKDLKELIN-----RRSKESTASIPS 102 >gi|269961757|ref|ZP_06176117.1| integration host factor beta subunit [Vibrio harveyi 1DA3] gi|269833540|gb|EEZ87639.1| integration host factor beta subunit [Vibrio harveyi 1DA3] Length = 94 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +V+++ + V FK L++R+ D Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVNID 93 >gi|221135499|ref|ZP_03561802.1| HU family DNA-binding protein [Glaciecola sp. HTCC2999] Length = 90 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 44/88 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ + + ++ R + + +++ F TF V+++ +R G Sbjct: 1 MNKSELIEKIADAADIKKVEAGRALDAFIEAVTAELKADGTVQLVGFGTFQVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT E++I +V FKA LK Sbjct: 61 RNPQTGAEIQIAAAKVPAFKAGKALKDA 88 >gi|322507540|gb|ADX02994.1| Putative bacterial nucleoid DNA-binding protein [Acinetobacter baumannii 1656-2] Length = 94 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+ + ++I+K+ G+S+ + + T + I S G+ + + F TF VK + Sbjct: 1 MSN-VTKKHIAETIAKKVGISKSQAEEALNTFESIIQGSLADGDQVTLVGFGTFAVKDRA 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN +T +E++I +V FK LK+ + Sbjct: 60 ARKGRNPKTGEEIQIAATKVPTFKPGKALKEAVNG 94 >gi|119470902|ref|ZP_01613486.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales bacterium TW-7] gi|119445924|gb|EAW27204.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales bacterium TW-7] Length = 91 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ +TR + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSALKEGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I + FKA LK ++ Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90 >gi|91774372|ref|YP_544128.1| nucleoid protein HU beta subunit [Methylobacillus flagellatus KT] gi|91708359|gb|ABE48287.1| bacterial nucleoid protein HU beta subunit [Methylobacillus flagellatus KT] Length = 90 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+KE G+S+ + + V + + G+ + + F TF V ++ +R G Sbjct: 1 MNKTELIEEIAKEAGISKAAAGKAVDAFTASVTAALKSGDTVTLIGFGTFGVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI R+ FKA LK + Sbjct: 61 RNPQTGKEIKIAARKAPSFKAGKALKDALN 90 >gi|221639022|ref|YP_002525284.1| integration host factor subunit alpha [Rhodobacter sphaeroides KD131] gi|221159803|gb|ACM00783.1| Integration host factor subunit alpha [Rhodobacter sphaeroides KD131] Length = 101 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S + V ++ + D+ GE +KISSF TF V+ K Sbjct: 2 MSDKTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDK 61 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +R+GRN +T EV I PRRV+ F+ S ++K+R+ + Sbjct: 62 SARIGRNPKTGDEVPISPRRVLTFRPSHLMKERVAAGGKN 101 >gi|327189794|gb|EGE56935.1| integration host factor protein, alpha subunit [Rhizobium etli CNPAF512] Length = 117 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 8 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 67 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 68 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 109 >gi|320355221|ref|YP_004196560.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320123723|gb|ADW19269.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 93 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 54/92 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SDL+++++++ L KD+ V T+ + D+ G +++ F +F V++ G Sbjct: 1 MTKSDLIQALAEQMNLPVKDAKSIVDTIIGTMVDALAEGRGVELRGFGSFQVREYEGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +++K+ P+++ FK L+ RI + Sbjct: 61 RNPKTGEQIKVAPKKLPFFKVGKDLRDRINSE 92 >gi|319408367|emb|CBI82020.1| DNA-binding protein [Bartonella schoenbuchensis R1] Length = 92 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ G+S+ + + + ++ G +++ F +F V ++ + G Sbjct: 1 MNKSELVNSIAEKAGVSKAQAGSILDAFIASVTEALASGGDVRLPGFGSFEVSKRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + Sbjct: 61 RNPSTGVEIHIPARSVPKFSAGKSLKEAVNK 91 >gi|270263573|ref|ZP_06191842.1| histone family protein DNA-binding protein [Serratia odorifera 4Rx13] gi|270042457|gb|EFA15552.1| histone family protein DNA-binding protein [Serratia odorifera 4Rx13] Length = 101 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F +F V+++ +R G Sbjct: 12 VNKSQLIDKIAAGADISKAAAGRALDAVIASVTESLKEGDDVALVGFGSFTVRERSARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 72 RNPQTGKEINIAAAKVPAFRAGKALKDAVN 101 >gi|77463165|ref|YP_352669.1| integration host factor subunit alpha [Rhodobacter sphaeroides 2.4.1] gi|126462037|ref|YP_001043151.1| integration host factor subunit alpha [Rhodobacter sphaeroides ATCC 17029] gi|146277950|ref|YP_001168109.1| integration host factor subunit alpha [Rhodobacter sphaeroides ATCC 17025] gi|332558039|ref|ZP_08412361.1| integration host factor subunit alpha [Rhodobacter sphaeroides WS8N] gi|123592159|sp|Q3J366|IHFA_RHOS4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918520|sp|A3PJ63|IHFA_RHOS1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918521|sp|A4WTU0|IHFA_RHOS5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|77387583|gb|ABA78768.1| Histone-like DNA-binding protein (IHF) [Rhodobacter sphaeroides 2.4.1] gi|126103701|gb|ABN76379.1| integration host factor, alpha subunit [Rhodobacter sphaeroides ATCC 17029] gi|145556191|gb|ABP70804.1| integration host factor, alpha subunit [Rhodobacter sphaeroides ATCC 17025] gi|332275751|gb|EGJ21066.1| integration host factor subunit alpha [Rhodobacter sphaeroides WS8N] Length = 100 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 1/100 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR +S + V ++ + D+ GE +KISSF TF V+ K Sbjct: 1 MSDKTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +R+GRN +T EV I PRRV+ F+ S ++K+R+ + Sbjct: 61 SARIGRNPKTGDEVPISPRRVLTFRPSHLMKERVAAGGKN 100 >gi|89056076|ref|YP_511527.1| integration host factor subunit beta [Jannaschia sp. CCS1] gi|123400948|sp|Q28LB0|IHFB_JANSC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|88865625|gb|ABD56502.1| integration host factor beta subunit [Jannaschia sp. CCS1] Length = 95 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +S + L ++D R V ++F E+ D+ G+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKLSDENPHLYQRDVERIVNSIFEEVIDALAAGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FKA +L+ R+ Sbjct: 61 GRNPRTGESVSVEEKHVPFFKAGKLLRDRLNG 92 >gi|295109533|emb|CBL23486.1| Bacterial nucleoid DNA-binding protein [Ruminococcus obeum A2-162] Length = 91 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++KE LS+KD + + + + D +G I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVADELKKGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I + FKA LK + Sbjct: 61 RNPQTGETMTIAASKAPKFKAGKALKDMVN 90 >gi|299133339|ref|ZP_07026534.1| integration host factor, beta subunit [Afipia sp. 1NLS2] gi|298593476|gb|EFI53676.1| integration host factor, beta subunit [Afipia sp. 1NLS2] Length = 103 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALSRGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T + V ++ + V FK +++R+ + + Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRNGHDEEAA 100 >gi|229035244|ref|ZP_04189179.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] gi|228728056|gb|EEL79097.1| DNA-binding protein HU 1 [Bacillus cereus AH1271] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L + ++++ L++KD+ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTRVVAEKAELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90 >gi|94497483|ref|ZP_01304053.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] gi|94423114|gb|EAT08145.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++++ GLS+ D+T+ V +F+ I + +G+ +++ F TF V Q+ + G Sbjct: 1 MNKQDLISTVAESSGLSKNDATKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSVN 90 >gi|298368498|ref|ZP_06979816.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] gi|298282501|gb|EFI23988.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E LS++ + FV + + G + + F TFH Q R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVDAFVSVVTQELKDGNDVTLVGFGTFHTAQSAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I R+ F+ LK + Sbjct: 61 RNPKTGEPLTIAARKTPKFRPGKALKDAVNG 91 >gi|239814620|ref|YP_002943530.1| integration host factor, subunit beta [Variovorax paradoxus S110] gi|239801197|gb|ACS18264.1| integration host factor, beta subunit [Variovorax paradoxus S110] Length = 104 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 6/104 (5%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ L+ +D+ V T+ + + D+ VRG I+I F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVTRRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-----DMRGRKC 102 GRN ++ + V+I +RV FK L++ + D +GRK Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELDAKGRKA 104 >gi|118443809|ref|YP_877121.1| DNA binding protein HU [Clostridium novyi NT] gi|118134265|gb|ABK61309.1| DNA binding protein HU [Clostridium novyi NT] Length = 92 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD + + ++ + G+ +++ F TF +++ R G Sbjct: 1 MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I V VFKA K+ + + Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91 >gi|240850682|ref|YP_002972082.1| integration host factor subunit alpha [Bartonella grahamii as4aup] gi|240267805|gb|ACS51393.1| integration host factor subunit alpha [Bartonella grahamii as4aup] Length = 104 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 54/102 (52%), Positives = 71/102 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + K GLS +S V + +EIC+S VRGEA+K+SSFATF V+ K Sbjct: 3 SKTVTRADLASVVCKRVGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RVGRN +T E I PRRVV FKA+++LK+RI+D R R+ Sbjct: 63 RVGRNPKTGVEAPIPPRRVVTFKAANVLKQRILDSHRARQKK 104 >gi|218459471|ref|ZP_03499562.1| integration host factor subunit alpha [Rhizobium etli Kim 5] gi|218662580|ref|ZP_03518510.1| integration host factor subunit alpha [Rhizobium etli IE4771] Length = 112 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 104 >gi|88859784|ref|ZP_01134424.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas tunicata D2] gi|88818801|gb|EAR28616.1| integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication [Pseudoalteromonas tunicata D2] Length = 99 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + + G+++KD+ V + F I + GE IK+S F F ++ K R Sbjct: 2 ALTKADIAEHLFVKLGINKKDAKELVESFFENIRAALESGEQIKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPISARRVVTFRPGQKLKTRVE 92 >gi|307292720|ref|ZP_07572566.1| histone family protein DNA-binding protein [Sphingobium chlorophenolicum L-1] gi|306880786|gb|EFN12002.1| histone family protein DNA-binding protein [Sphingobium chlorophenolicum L-1] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++++ GLS+ D+++ V +F+ I + +G+ +++ F TF V Q+ + G Sbjct: 1 MNKQDLIGAVAESSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGETMTIKASAQPKFKAGKGLKDSVN 90 >gi|291518256|emb|CBK73477.1| Bacterial nucleoid DNA-binding protein [Butyrivibrio fibrisolvens 16/4] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + +S+KD+ V + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIASKANISKKDAEASVKAFTEVVAEELKKGEKIQLVGFGTFEVSKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI + FKA LK I Sbjct: 61 RNPQTGAEMKIPASKAPKFKAGKALKDSIN 90 >gi|114777720|ref|ZP_01452680.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] gi|114551936|gb|EAU54470.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] Length = 94 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+++ G++R+++ V T+F+ I D+ G+ +++ F +F K + +R+ Sbjct: 1 MTKSELVEIIAEQQAGITRREAEVVVNTIFSVIGDALAVGDHVELRGFGSFTTKARQARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + + FK L++R+ + Sbjct: 61 GRNPKTGEAVSVPAKSIPHFKPGKDLRERVDNA 93 >gi|77362371|ref|YP_341945.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas haloplanktis TAC125] gi|76877282|emb|CAI89499.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas haloplanktis TAC125] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ +TR + + S G+++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I + FKA LK ++ Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90 >gi|54294745|ref|YP_127160.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens] gi|54297775|ref|YP_124144.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris] gi|148359403|ref|YP_001250610.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby] gi|296107449|ref|YP_003619149.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99 Alcoy] gi|53751560|emb|CAH12978.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris] gi|53754577|emb|CAH16061.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens] gi|148281176|gb|ABQ55264.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby] gi|295649350|gb|ADG25197.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99 Alcoy] gi|307610561|emb|CBX00149.1| hypothetical protein LPW_18941 [Legionella pneumophila 130b] Length = 92 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GL++ D++R + T + D +G+ + I F +F + +R G Sbjct: 1 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + ++I RV FKA LK+ + Sbjct: 61 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 92 >gi|330831142|ref|YP_004394094.1| integration host factor subunit beta [Aeromonas veronii B565] gi|328806278|gb|AEB51477.1| Integration host factor, beta subunit [Aeromonas veronii B565] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +I+ + LS+ + + + N I S G+A+++ F TF V + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVTHRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V F A LK + Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >gi|260575262|ref|ZP_05843262.1| integration host factor, alpha subunit [Rhodobacter sp. SW2] gi|259022522|gb|EEW25818.1| integration host factor, alpha subunit [Rhodobacter sp. SW2] Length = 100 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 1/99 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ +E GLSR DS + V + + D+ V GE +KISSF TF V+ K Sbjct: 1 MSEKTLTRMDLSEAVFREVGLSRNDSAQLVEAVLQHMSDALVGGETVKISSFGTFSVRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN +T EV I PRRV+ F+ S ++K R+ + Sbjct: 61 SARVGRNPKTGDEVPISPRRVMTFRPSHLMKDRVAAGKK 99 >gi|166033174|ref|ZP_02236003.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC 27755] gi|166027531|gb|EDR46288.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC 27755] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + +S+KDS + + + + + +G I++ F TF ++ +R G Sbjct: 1 MNKTELVAAIADKAEISKKDSEKALKAFVDVVTEELKKGHKIQLVGFGTFETSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + +KI+ + FKA LK + + Sbjct: 61 RNPSTGETMKIEACKAPKFKAGKALKDAVNE 91 >gi|84683356|ref|ZP_01011259.1| integration host factor, beta subunit [Maritimibacter alkaliphilus HTCC2654] gi|84668099|gb|EAQ14566.1| integration host factor, beta subunit [Rhodobacterales bacterium HTCC2654] Length = 93 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F EI ++ RG+ +++ F F VKQ+ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKQRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK +L+ R+ + Sbjct: 61 GRNPRTGESVDVEEKHVPFFKTGKLLRDRLNGN 93 >gi|78485543|ref|YP_391468.1| integration host factor, beta subunit [Thiomicrospira crunogena XCL-2] gi|78363829|gb|ABB41794.1| integration host factor, beta subunit [Thiomicrospira crunogena XCL-2] Length = 108 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+++ S+KD + + + + D+ G+ I+I F +F + + +R+ Sbjct: 8 MTKSELIELIARKQTQFSQKDVELAINQILDSMIDTLSEGDRIEIRGFGSFSLHHRKARL 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++V++ +RV FK L+ R+ Sbjct: 68 GRNPKTGEKVELSEKRVPHFKPGKSLRDRV 97 >gi|170718718|ref|YP_001783908.1| histone family protein DNA-binding protein [Haemophilus somnus 2336] gi|168826847|gb|ACA32218.1| histone family protein DNA-binding protein [Haemophilus somnus 2336] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S GEA+++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIAGAAELNKKQAKAALEATLGAIAGSLKAGEAVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F A LK + Sbjct: 61 RNPQTGAEIQIAASKVPAFVAGKALKDSVN 90 >gi|255524045|ref|ZP_05391007.1| histone family protein DNA-binding protein [Clostridium carboxidivorans P7] gi|296186901|ref|ZP_06855302.1| putative integration host factor, beta subunit [Clostridium carboxidivorans P7] gi|255512332|gb|EET88610.1| histone family protein DNA-binding protein [Clostridium carboxidivorans P7] gi|296048615|gb|EFG88048.1| putative integration host factor, beta subunit [Clostridium carboxidivorans P7] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+++ L++KD + + ++ +G+ +++ F TF +++ +RVG Sbjct: 1 MNKSELIASIAEKSKLTKKDVEVVLKGFIESVEETLEKGDKVQLVGFGTFETRKRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E++I V VFKA K ++ Sbjct: 61 RNPRTKEEIEIPESTVPVFKAGKEFKDKVNK 91 >gi|222148217|ref|YP_002549174.1| integration host factor subunit alpha [Agrobacterium vitis S4] gi|254803508|sp|B9JV88|IHFA_AGRVS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|221735205|gb|ACM36168.1| integration host factor alpha subunit [Agrobacterium vitis S4] Length = 112 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 51/110 (46%), Positives = 76/110 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGEMVKLSSFATFQVRAKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 R+GRN +T +EV I PR+V+ FKAS++LK+RI+ RK + + Sbjct: 63 RIGRNPKTGEEVPISPRKVMTFKASNVLKQRILRSHLARKAKQKPANPAA 112 >gi|85858504|ref|YP_460706.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85721595|gb|ABC76538.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 62/91 (68%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ D+++ + ++ G S+KDS R V ++F+ I +S RGE IKIS F F VK+K SR G Sbjct: 1 MTKIDIIQDVYEKLGFSKKDSARIVESVFDIIKESLGRGEKIKISGFGNFVVKEKKSRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E+ I RRV+ FK+S +L+K + D Sbjct: 61 RNPQTGDEISISARRVLTFKSSQVLRKALND 91 >gi|94499400|ref|ZP_01305937.1| integration host factor, beta subunit [Oceanobacter sp. RED65] gi|94428154|gb|EAT13127.1| integration host factor, beta subunit [Oceanobacter sp. RED65] Length = 101 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+++ +S KD V T+ + + + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERITEKHPEMSAKDIELAVKTILDTMSQALSQGERIEIRGFGSFSLHFRNPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + V + + V FK L++++ D + G Sbjct: 61 GRNPKTGEAVPLKGKYVPHFKPGKELREQVNDLVNG 96 >gi|258544542|ref|ZP_05704776.1| integration host factor subunit alpha [Cardiobacterium hominis ATCC 15826] gi|258520173|gb|EEV89032.1| integration host factor subunit alpha [Cardiobacterium hominis ATCC 15826] Length = 98 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 56/95 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+SI + G+ R D+ + V LF E+ GEA+K+S F F ++ K R Sbjct: 2 TLTKADIVESIIAQIGIPRPDARQMVDDLFEEVRACLATGEAVKLSGFGNFELRDKKQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV FKA LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVSFKAGQKLKARVSGSKP 96 >gi|153854753|ref|ZP_01995987.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814] gi|149752660|gb|EDM62591.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814] Length = 91 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + LS+KDS + + + + + + +++ F TF V + R G Sbjct: 1 MNKTELIAAIADQAELSKKDSEKALKAFIDVVTEELKKEHKVQVVGFGTFEVSMRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI + FKA LK I + Sbjct: 61 RNPQTGETMKIAACKAPKFKAGKALKDAINE 91 >gi|33152141|ref|NP_873494.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP] gi|33148363|gb|AAP95883.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I + LS+KD+ + N I S G+++++ F TF V ++ R+G Sbjct: 1 MNKTELIDAIVADTALSKKDAKAALEATLNAISGSLKNGDSVQLIGFGTFKVNERSERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +V F A LK + Sbjct: 61 RNPRTGEEIKIAASKVPAFVAGKALKDLVK 90 >gi|330817268|ref|YP_004360973.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3] gi|327369661|gb|AEA61017.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3] Length = 90 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I++E LS+ + R + L + + G ++ ++ F TF V ++ +R G Sbjct: 1 MNKTDLIDHIAREADLSKASAGRALDALIAGVVQALESGGSVTLAGFGTFEVGERIARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I+ RV F+A LK + Sbjct: 61 RNPQTGETIRIEAARVAKFRAGKALKDALN 90 >gi|152972862|ref|YP_001338008.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156935797|ref|YP_001439713.1| transcriptional regulator HU subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|206580695|ref|YP_002241059.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342] gi|238892475|ref|YP_002917209.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|260596103|ref|YP_003208674.1| transcriptional regulator HU subunit alpha [Cronobacter turicensis z3032] gi|262043760|ref|ZP_06016863.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937704|ref|YP_003441763.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|290513212|ref|ZP_06552573.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55] gi|311281445|ref|YP_003943676.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|330005095|ref|ZP_08305105.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3] gi|150957711|gb|ABR79741.1| DNA-binding protein HU-alpha (HU-2) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156534051|gb|ABU78877.1| hypothetical protein ESA_03673 [Cronobacter sakazakii ATCC BAA-894] gi|206569753|gb|ACI11529.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342] gi|238544791|dbj|BAH61142.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038884|gb|EEW40052.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260215280|emb|CBA27205.1| DNA-binding protein HU-alpha [Cronobacter turicensis z3032] gi|288892413|gb|ADC60731.1| histone family protein DNA-binding protein [Klebsiella variicola At-22] gi|289774309|gb|EFD82316.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55] gi|308750640|gb|ADO50392.1| histone family protein DNA-binding protein [Enterobacter cloacae SCF1] gi|328536428|gb|EGF62781.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|238785563|ref|ZP_04629544.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970] gi|238794946|ref|ZP_04638543.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909] gi|238798678|ref|ZP_04642152.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969] gi|238713548|gb|EEQ05579.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970] gi|238717496|gb|EEQ09338.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969] gi|238725704|gb|EEQ17261.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+ +++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSVK 90 >gi|225375853|ref|ZP_03753074.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans DSM 16841] gi|225212288|gb|EEG94642.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans DSM 16841] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + + + + +GE I++ F TF V ++ R G Sbjct: 1 MNKAELVAAMAEKAELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q+ +E+ I + FKA LK + Sbjct: 61 RNPQSGKEMVIPASKAPKFKAGKALKDMVN 90 >gi|304399314|ref|ZP_07381179.1| histone family protein DNA-binding protein [Pantoea sp. aB] gi|308188920|ref|YP_003933051.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|304353170|gb|EFM17552.1| histone family protein DNA-binding protein [Pantoea sp. aB] gi|308059430|gb|ADO11602.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|291615778|ref|YP_003518520.1| HupA [Pantoea ananatis LMG 20103] gi|329296840|ref|ZP_08254176.1| transcriptional regulator HU subunit alpha [Plautia stali symbiont] gi|291150808|gb|ADD75392.1| HupA [Pantoea ananatis LMG 20103] gi|327396044|dbj|BAK13466.1| DNA-binding protein HU-alpha HupA [Pantoea ananatis AJ13355] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|261344010|ref|ZP_05971655.1| integration host factor, alpha subunit [Providencia rustigianii DSM 4541] gi|282568401|gb|EFB73936.1| integration host factor, alpha subunit [Providencia rustigianii DSM 4541] Length = 98 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ G+S++D+ V T F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEKLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKNRVEKATP 96 >gi|190891218|ref|YP_001977760.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT 652] gi|218515089|ref|ZP_03511929.1| integration host factor subunit alpha [Rhizobium etli 8C-3] gi|226709742|sp|B3PVE1|IHFA_RHIE6 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|190696497|gb|ACE90582.1| integration host factor protein, alpha subunit [Rhizobium etli CIAT 652] Length = 112 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 104 >gi|22124414|ref|NP_667837.1| transcriptional regulator HU subunit alpha [Yersinia pestis KIM 10] gi|45442848|ref|NP_994387.1| transcriptional regulator HU subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|51594652|ref|YP_068843.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|108809595|ref|YP_653511.1| transcriptional regulator HU subunit alpha [Yersinia pestis Antiqua] gi|108810400|ref|YP_646167.1| transcriptional regulator HU subunit alpha [Yersinia pestis Nepal516] gi|145600976|ref|YP_001165052.1| transcriptional regulator HU subunit alpha [Yersinia pestis Pestoides F] gi|153947801|ref|YP_001402797.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|153997235|ref|ZP_02022342.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125] gi|162418414|ref|YP_001605067.1| transcriptional regulator HU subunit alpha [Yersinia pestis Angola] gi|165928324|ref|ZP_02224156.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. F1991016] gi|165938152|ref|ZP_02226711.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. IP275] gi|166012045|ref|ZP_02232943.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. E1979001] gi|166214410|ref|ZP_02240445.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. B42003004] gi|167402421|ref|ZP_02307881.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422943|ref|ZP_02314696.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426821|ref|ZP_02318574.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022612|ref|YP_001719117.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis YPIII] gi|186893654|ref|YP_001870766.1| transcriptional regulator HU subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|218930736|ref|YP_002348611.1| transcriptional regulator HU subunit alpha [Yersinia pestis CO92] gi|229837478|ref|ZP_04457640.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Pestoides A] gi|229839413|ref|ZP_04459572.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899975|ref|ZP_04515115.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229900576|ref|ZP_04515702.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Nepal516] gi|270488931|ref|ZP_06206005.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|21957198|gb|AAM84088.1|AE013651_1 DNA-binding protein HU-alpha (HU-2) [Yersinia pestis KIM 10] gi|45437714|gb|AAS63264.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Microtus str. 91001] gi|51587934|emb|CAH19537.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP 32953] gi|108774048|gb|ABG16567.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis Nepal516] gi|108781508|gb|ABG15566.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis Antiqua] gi|115349347|emb|CAL22318.1| DNA-binding protein HU-alpha [Yersinia pestis CO92] gi|145212672|gb|ABP42079.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis Pestoides F] gi|149289343|gb|EDM39422.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125] gi|152959296|gb|ABS46757.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP 31758] gi|162351229|gb|ABX85177.1| DNA-binding protein HU-alpha [Yersinia pestis Angola] gi|165913813|gb|EDR32431.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. IP275] gi|165919663|gb|EDR36996.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. F1991016] gi|165989040|gb|EDR41341.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. E1979001] gi|166204414|gb|EDR48894.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. B42003004] gi|166957154|gb|EDR55175.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048201|gb|EDR59609.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054203|gb|EDR64028.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749146|gb|ACA66664.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis YPIII] gi|186696680|gb|ACC87309.1| histone family protein DNA-binding protein [Yersinia pseudotuberculosis PB1/+] gi|229682396|gb|EEO78486.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Nepal516] gi|229686960|gb|EEO79036.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229695779|gb|EEO85826.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704166|gb|EEO91177.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis Pestoides A] gi|270337435|gb|EFA48212.1| DNA-binding protein HU [Yersinia pestis KIM D27] gi|320013669|gb|ADV97240.1| HU, DNA-binding transcriptional regulator, alpha subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+ +++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|332535436|ref|ZP_08411223.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] gi|332035160|gb|EGI71672.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis ANT/505] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ +TR + + S G+++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I + FKA LK ++ Sbjct: 61 RNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90 >gi|153833369|ref|ZP_01986036.1| integration host factor, beta subunit [Vibrio harveyi HY01] gi|156975132|ref|YP_001446039.1| integration host factor subunit beta [Vibrio harveyi ATCC BAA-1116] gi|166975895|sp|A7MUP0|IHFB_VIBHB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|148870378|gb|EDL69304.1| integration host factor, beta subunit [Vibrio harveyi HY01] gi|156526726|gb|ABU71812.1| hypothetical protein VIBHAR_02859 [Vibrio harveyi ATCC BAA-1116] Length = 94 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|71282434|ref|YP_268603.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H] gi|71148174|gb|AAZ28647.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+ I++ +S+ + R + +L + G + + F T+ V + +R G Sbjct: 1 MNKSELVEKIAEGADISKASAGRALDSLIGSVTTELANGGDVALVGFGTYKVNDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FKA LK + Sbjct: 61 RNPQTGAEIQISAAKVPAFKAGKALKDAVN 90 >gi|168187043|ref|ZP_02621678.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund] gi|169295104|gb|EDS77237.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund] Length = 92 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD + + ++ + GE +++ F TF +++ R G Sbjct: 1 MNKSELITSMAEKSQLTKKDVEVALKAFIESVEEALMDGEKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I V VFKA K+ + + Sbjct: 61 RNPRTKEEITIPAATVPVFKAGKEFKEIVNN 91 >gi|229170534|ref|ZP_04298182.1| DNA-binding protein HU [Bacillus cereus AH621] gi|228612883|gb|EEK70060.1| DNA-binding protein HU [Bacillus cereus AH621] Length = 93 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 53/92 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ + N I ++ E ++I F TF V+++ +R Sbjct: 2 QKMNKAELTKMVAEKAELTQKDAAAATQAVLNAITNALANEEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|171057653|ref|YP_001790002.1| integration host factor subunit beta [Leptothrix cholodnii SP-6] gi|170775098|gb|ACB33237.1| integration host factor, beta subunit [Leptothrix cholodnii SP-6] Length = 112 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV +++ L+ +D+ V T+ + + D+ RG I+I F +F + ++ RV Sbjct: 1 MTRSDLVALLAERFSQLTHRDAEFAVKTMLDAMSDALARGHRIEIRGFGSFAINRRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V I + V FK L++ + Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAV 90 >gi|148556459|ref|YP_001264041.1| integration host factor subunit alpha [Sphingomonas wittichii RW1] gi|166918531|sp|A5VC87|IHFA_SPHWW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148501649|gb|ABQ69903.1| integration host factor, alpha subunit [Sphingomonas wittichii RW1] Length = 100 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 42/93 (45%), Positives = 62/93 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL + + +E GLSR DS V + +C + RGE +KIS F +F +++KG R+ Sbjct: 7 TLTRADLSEEVHREIGLSRADSAAVVEQVLEHMCLALARGENVKISGFGSFILREKGQRI 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T EV I PRRV+ F+AS +L+ RI+ Sbjct: 67 GRNPKTGVEVPIAPRRVLTFRASQMLRDRIVSG 99 >gi|260768939|ref|ZP_05877873.1| integration host factor beta subunit [Vibrio furnissii CIP 102972] gi|260616969|gb|EEX42154.1| integration host factor beta subunit [Vibrio furnissii CIP 102972] gi|315180635|gb|ADT87549.1| integration host factor subunit beta [Vibrio furnissii NCTC 11218] Length = 94 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 56/94 (59%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMANTLEAGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T ++V+++ + V FK L++R+ +++ Sbjct: 61 GRNPKTGEKVELEGKFVPHFKPGKELRERVNENI 94 >gi|254429814|ref|ZP_05043521.1| integration host factor, alpha subunit [Alcanivorax sp. DG881] gi|196195983|gb|EDX90942.1| integration host factor, alpha subunit [Alcanivorax sp. DG881] Length = 100 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F EI S +K+S F F ++ K R Sbjct: 3 ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLENNIPVKLSGFGNFDLRDKSERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK+R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRVE 93 >gi|86357171|ref|YP_469063.1| integration host factor subunit alpha [Rhizobium etli CFN 42] gi|123738362|sp|Q2KA00|IHFA_RHIEC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|86281273|gb|ABC90336.1| integration host factor alpha-subunit protein [Rhizobium etli CFN 42] Length = 112 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVTRKVK 104 >gi|322418662|ref|YP_004197885.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320125049|gb|ADW12609.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E L++ D+ + +T + + + D G+ + + F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEEAQLTKVDADKALTGILDALTDCLAAGDKVTLVGFGTFSVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT ++++I FK + LK I Sbjct: 61 QNPQTGKKIEIAASTAPKFKPGNTLKALING 91 >gi|148552974|ref|YP_001260556.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148498164|gb|ABQ66418.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ G+++ D+++ V +F+ I +G+ +++ F TF V ++ + G Sbjct: 1 MNKQELIGTVAEATGMTKNDASKAVEAVFDSITTQLKKGDEVRLVGFGTFSVTKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI FK LK + Sbjct: 61 RNPRTGEPMKISASSQPKFKPGKGLKDAVN 90 >gi|307822734|ref|ZP_07652965.1| integration host factor, alpha subunit [Methylobacter tundripaludum SV96] gi|307736338|gb|EFO07184.1| integration host factor, alpha subunit [Methylobacter tundripaludum SV96] Length = 98 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D + + E GL+++++ V F EI S GE +KIS F F ++ K SR Sbjct: 2 ALTKADFAERLFDELGLNKREAKDMVEMFFEEIKGSLEHGEQVKISGFGKFELRDKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F++ LK R+ Sbjct: 62 GRNPKTGEEIPITARRVVTFRSGQKLKARVE 92 >gi|123440689|ref|YP_001004681.1| transcriptional regulator HU subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332159925|ref|YP_004296502.1| transcriptional regulator HU subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122087650|emb|CAL10432.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318607524|emb|CBY29022.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp. palearctica Y11] gi|325664155|gb|ADZ40799.1| transcriptional regulator HU subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863075|emb|CBX73206.1| DNA-binding protein HU-alpha [Yersinia enterocolitica W22703] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|86146200|ref|ZP_01064525.1| DNA-binding protein HU-beta [Vibrio sp. MED222] gi|218709724|ref|YP_002417345.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] gi|85835911|gb|EAQ54044.1| DNA-binding protein HU-beta [Vibrio sp. MED222] gi|218322743|emb|CAV18920.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 45/87 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ I+ +S++ + + L I + G+ + I F +F V + +R G Sbjct: 1 MNKSQLVEHIATSADISKEQAGTALNALVEGISTTLANGDDVSILGFGSFKVNSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I + FKA LK+ Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87 >gi|260776374|ref|ZP_05885269.1| integration host factor beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260607597|gb|EEX33862.1| integration host factor beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 93 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLETGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V+++ + V FK L++R+ Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRERVN 91 >gi|300714862|ref|YP_003739665.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae Eb661] gi|299060698|emb|CAX57805.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae Eb661] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|114775527|ref|ZP_01451095.1| histone-like protein [Mariprofundus ferrooxydans PV-1] gi|114553638|gb|EAU56019.1| histone-like protein [Mariprofundus ferrooxydans PV-1] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ G+S+ + V + + I S G ++ + F TF V + +R Sbjct: 1 MNKTDLIDHVASSAGMSKTAAGDAVDAVLSGITASLSGGGSVSLVGFGTFSVTARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + + FK LK + Sbjct: 61 RNPRTGEAIAVAASNAPKFKPGKALKDAVN 90 >gi|28898803|ref|NP_798408.1| integration host factor subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|260880823|ref|ZP_05893178.1| integration host factor, beta subunit [Vibrio parahaemolyticus AN-5034] gi|33301263|sp|Q87N46|IHFB_VIBPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|28807022|dbj|BAC60292.1| integration host factor, beta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308093630|gb|EFO43325.1| integration host factor, beta subunit [Vibrio parahaemolyticus AN-5034] gi|328474638|gb|EGF45443.1| integration host factor subunit beta [Vibrio parahaemolyticus 10329] Length = 93 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|293394036|ref|ZP_06638340.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] gi|291423476|gb|EFE96701.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|254520528|ref|ZP_05132584.1| histone family protein DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226914277|gb|EEH99478.1| histone family protein DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S+S++ L++KD+ + + + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMSEKSKLTKKDAELALKSFIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I V VFKA K+++ Sbjct: 61 RNPRTKETINIPASTVPVFKAGKEFKEKVNK 91 >gi|167747374|ref|ZP_02419501.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662] gi|317471104|ref|ZP_07930476.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA] gi|167653352|gb|EDR97481.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662] gi|316901418|gb|EFV23360.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA] Length = 92 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ + LS+KD+ + + + I + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIASKTELSKKDAEKALKAFTDVIAEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + + I + FKA LK + + Sbjct: 61 RNPRSGEVMNIPASKAPKFKAGKALKDIVNE 91 >gi|90424175|ref|YP_532545.1| integration host factor subunit alpha [Rhodopseudomonas palustris BisB18] gi|123089633|sp|Q214G0|IHFA_RHOPB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|90106189|gb|ABD88226.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisB18] Length = 108 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 69/104 (66%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T EV I PRRV+VFK S+ILK+RI + D Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINANGAAAPTKTD 108 >gi|332186955|ref|ZP_08388696.1| integration host factor, alpha subunit [Sphingomonas sp. S17] gi|332012965|gb|EGI55029.1| integration host factor, alpha subunit [Sphingomonas sp. S17] Length = 99 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 46/90 (51%), Positives = 64/90 (71%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+ +E GLSR DS + V + E+CD+ RGE +KIS F TF ++ KG RV Sbjct: 6 TLTRADLAESLHQEVGLSRSDSAQVVEQILVEMCDALSRGENVKISGFGTFVLRDKGERV 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T EV I PRRV+ F+AS +++ RI Sbjct: 66 GRNPKTGVEVPIAPRRVLTFRASQMMRDRI 95 >gi|254000458|ref|YP_003052521.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|313202418|ref|YP_004041076.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] gi|253987137|gb|ACT51994.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|312441734|gb|ADQ85840.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ G+S+ + + + + + + +G+++ + F TF V ++ +R G Sbjct: 1 MNKQELIEEIATSAGISKAAAGKVIDAFTSSVTGALKKGDSVTLIGFGTFAVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI R+ F+A LK + Sbjct: 61 RNPQTGKEIKIAARKAPAFRAGKALKDALN 90 >gi|238018754|ref|ZP_04599180.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC 17748] gi|237864520|gb|EEP65810.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC 17748] Length = 99 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q + + I + FKA LK+++ Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQVN 90 >gi|218710036|ref|YP_002417657.1| integration host factor subunit beta [Vibrio splendidus LGP32] gi|254803543|sp|B7VH32|IHFB_VIBSL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|218323055|emb|CAV19232.1| Integration host factor beta-subunit (IHF-beta) [Vibrio splendidus LGP32] Length = 94 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T +V+++ + V FK L++R+ + Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVNSGL 94 >gi|269798417|ref|YP_003312317.1| histone family protein DNA-binding protein [Veillonella parvula DSM 2008] gi|282850654|ref|ZP_06260033.1| DNA-binding protein HU [Veillonella parvula ATCC 17745] gi|294792285|ref|ZP_06757433.1| DNA-binding protein HU [Veillonella sp. 6_1_27] gi|294794144|ref|ZP_06759281.1| DNA-binding protein HU [Veillonella sp. 3_1_44] gi|269095046|gb|ACZ25037.1| histone family protein DNA-binding protein [Veillonella parvula DSM 2008] gi|282580147|gb|EFB85551.1| DNA-binding protein HU [Veillonella parvula ATCC 17745] gi|294455714|gb|EFG24086.1| DNA-binding protein HU [Veillonella sp. 3_1_44] gi|294457515|gb|EFG25877.1| DNA-binding protein HU [Veillonella sp. 6_1_27] Length = 99 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAQELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q + + I + FKA LK+++ Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQVN 90 >gi|119774364|ref|YP_927104.1| HU family DNA-binding protein [Shewanella amazonensis SB2B] gi|119766864|gb|ABL99434.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + + + + G I + F TF V+++ R G Sbjct: 1 MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGGKISLVGFGTFEVRERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q+ +E+KI ++ FKA LK + Sbjct: 61 RNPQSGKEIKIPAAKIPAFKAGKALKDAVN 90 >gi|182419997|ref|ZP_02951231.1| DNA-binding protein HU 1 [Clostridium butyricum 5521] gi|237669484|ref|ZP_04529464.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376034|gb|EDT73621.1| DNA-binding protein HU 1 [Clostridium butyricum 5521] gi|237654928|gb|EEP52488.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E BL5262] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + + ++ GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKSFIESVEEALENGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I V VFKA K ++ Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91 >gi|303245326|ref|ZP_07331610.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|302493175|gb|EFL53037.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+++ GL++ ++ R + I + V I ++ F TF V ++ +R G Sbjct: 1 MTKADLVGKIAEKTGLTKANAERALNAFIEAIEATLVGEGKITLTGFGTFMVDERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+ I +VV F+ +LK I Sbjct: 61 RNPRTGAEINIPASKVVKFRPGKLLKDAIQ 90 >gi|77163719|ref|YP_342244.1| integration host factor, beta subunit [Nitrosococcus oceani ATCC 19707] gi|76882033|gb|ABA56714.1| Integration host factor, beta subunit [Nitrosococcus oceani ATCC 19707] Length = 113 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS +D V L + + +GE I+I F +F + + R Sbjct: 18 MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 77 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 78 GRNPKTGDAVPLSSKYVPHFKPGKELRERV 107 >gi|282600358|ref|ZP_05974005.2| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541] gi|282565675|gb|EFB71210.1| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541] Length = 96 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ ++ E +S+ + R V + S +G+ + + F TF V+++ +R+G Sbjct: 6 VNKSQLIEKVASEANISKAAAGRVVDAFVASVTGSLKKGDDVTLVGFGTFSVRKRAARIG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F+A LK + Sbjct: 66 RNPQTGKEIKIAAATVPAFRAGKGLKDAVN 95 >gi|183598822|ref|ZP_02960315.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC 25827] gi|188021030|gb|EDU59070.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC 25827] Length = 98 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V + F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGVSKRDAKDLVESFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEKATP 96 >gi|322834808|ref|YP_004214835.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] gi|321170009|gb|ADW75708.1| histone family protein DNA-binding protein [Rahnella sp. Y9602] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKVALESTLSAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|15640302|ref|NP_229929.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586341|ref|ZP_01676130.1| DNA-binding protein HU [Vibrio cholerae 2740-80] gi|121727076|ref|ZP_01680267.1| DNA-binding protein HU [Vibrio cholerae V52] gi|147674530|ref|YP_001218528.1| DNA-binding protein HU [Vibrio cholerae O395] gi|153801528|ref|ZP_01956114.1| DNA-binding protein HU [Vibrio cholerae MZO-3] gi|153818506|ref|ZP_01971173.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457] gi|153826741|ref|ZP_01979408.1| DNA-binding protein HU [Vibrio cholerae MZO-2] gi|153830400|ref|ZP_01983067.1| DNA-binding protein HU [Vibrio cholerae 623-39] gi|227080487|ref|YP_002809038.1| DNA-binding protein HU [Vibrio cholerae M66-2] gi|229506930|ref|ZP_04396438.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286] gi|229509301|ref|ZP_04398784.1| DNA-binding protein HU-alpha [Vibrio cholerae B33] gi|229512729|ref|ZP_04402197.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21] gi|229516247|ref|ZP_04405695.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9] gi|229521010|ref|ZP_04410431.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80] gi|229524780|ref|ZP_04414185.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426] gi|229527230|ref|ZP_04416623.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)] gi|229606441|ref|YP_002877089.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236] gi|254225659|ref|ZP_04919266.1| DNA-binding protein HU [Vibrio cholerae V51] gi|254286255|ref|ZP_04961214.1| DNA-binding protein HU [Vibrio cholerae AM-19226] gi|254851407|ref|ZP_05240757.1| DNA-binding protein HU [Vibrio cholerae MO10] gi|255744076|ref|ZP_05418030.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101] gi|262161965|ref|ZP_06030982.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1] gi|262168021|ref|ZP_06035720.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27] gi|262192520|ref|ZP_06050670.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93] gi|297581737|ref|ZP_06943659.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385] gi|298500908|ref|ZP_07010710.1| DNA-binding protein HU [Vibrio cholerae MAK 757] gi|14194652|sp|Q9KV83|DBHA_VIBCH RecName: Full=DNA-binding protein HU-alpha gi|9654683|gb|AAF93448.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549461|gb|EAX59489.1| DNA-binding protein HU [Vibrio cholerae 2740-80] gi|121630587|gb|EAX62977.1| DNA-binding protein HU [Vibrio cholerae V52] gi|124122933|gb|EAY41676.1| DNA-binding protein HU [Vibrio cholerae MZO-3] gi|125621779|gb|EAZ50106.1| DNA-binding protein HU [Vibrio cholerae V51] gi|126510982|gb|EAZ73576.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457] gi|146316413|gb|ABQ20952.1| DNA-binding protein HU [Vibrio cholerae O395] gi|148874134|gb|EDL72269.1| DNA-binding protein HU [Vibrio cholerae 623-39] gi|149739456|gb|EDM53694.1| DNA-binding protein HU [Vibrio cholerae MZO-2] gi|150423670|gb|EDN15612.1| DNA-binding protein HU [Vibrio cholerae AM-19226] gi|227008375|gb|ACP04587.1| DNA-binding protein HU [Vibrio cholerae M66-2] gi|227012115|gb|ACP08325.1| DNA-binding protein HU [Vibrio cholerae O395] gi|229335238|gb|EEO00722.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)] gi|229338361|gb|EEO03378.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426] gi|229341895|gb|EEO06896.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80] gi|229346673|gb|EEO11643.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9] gi|229350239|gb|EEO15191.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21] gi|229353616|gb|EEO18553.1| DNA-binding protein HU-alpha [Vibrio cholerae B33] gi|229356035|gb|EEO20954.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286] gi|229369096|gb|ACQ59519.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236] gi|254847112|gb|EET25526.1| DNA-binding protein HU [Vibrio cholerae MO10] gi|255738341|gb|EET93732.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101] gi|262023554|gb|EEY42256.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27] gi|262028343|gb|EEY46999.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1] gi|262031565|gb|EEY50153.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93] gi|297534144|gb|EFH72983.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385] gi|297540412|gb|EFH76471.1| DNA-binding protein HU [Vibrio cholerae MAK 757] gi|327483145|gb|AEA77552.1| DNA-binding protein HU-alpha [Vibrio cholerae LMA3894-4] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + G+ +++ F TF V + +R G Sbjct: 1 MNKTQLIDFIAEKADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI V F A LK I Sbjct: 61 RNPKTGEEIKIAAANVPAFVAGKALKDAIK 90 >gi|326385528|ref|ZP_08207167.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326210067|gb|EGD60845.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ GLS+ D+T+ V +F+ I S +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLISAVADASGLSKGDATKAVEAVFDSITGSLAKGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAVN 90 >gi|227115024|ref|ZP_03828680.1| transcriptional regulator HU subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328381|ref|ZP_03832405.1| transcriptional regulator HU subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253686628|ref|YP_003015818.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261819582|ref|YP_003257688.1| transcriptional regulator HU subunit alpha [Pectobacterium wasabiae WPP163] gi|251753206|gb|ACT11282.1| histone family protein DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261603595|gb|ACX86081.1| histone family protein DNA-binding protein [Pectobacterium wasabiae WPP163] Length = 90 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|193214421|ref|YP_001995620.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] gi|193087898|gb|ACF13173.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 93 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ E GL++ DS R + + + G+++ + F TF V + R G Sbjct: 1 MTKADLVEKIAAESGLTKADSERALNAFVKTVSAALKSGDSVTLVGFGTFTVMDRSEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + + I ++V FK + LK + Sbjct: 61 RNPKTGESMTIAAKKVPKFKPGATLKNEVAGS 92 >gi|145220403|ref|YP_001131112.1| histone family protein DNA-binding protein [Prosthecochloris vibrioformis DSM 265] gi|145206567|gb|ABP37610.1| histone family protein DNA-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + L++ D+ + V N + S G+ + + F TF + R G Sbjct: 1 MSKAELVEKIAAQANLTKVDAEKSVNAFINVVTSSLKAGDDVTLVGFGTFTTGDRAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + VV FK LK + Sbjct: 61 RNPQTGKTITIPAKTVVKFKPGKALKDEVAG 91 >gi|291561223|emb|CBL40022.1| Bacterial nucleoid DNA-binding protein [butyrate-producing bacterium SS3/4] Length = 91 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + + + I V+GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEQAELSKKDAEKALKAFTDVIAAELVKGEKVQLVGFGTFEVSEREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T +++ I + FKA LK + Sbjct: 61 RNPLTGEKITIAASKNPKFKAGKALKDMVN 90 >gi|225075294|ref|ZP_03718493.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens NRL30031/H210] gi|224953469|gb|EEG34678.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens NRL30031/H210] Length = 109 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ G+ + + F TF+V ++ R G Sbjct: 21 VNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 80 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 81 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 109 >gi|88810654|ref|ZP_01125911.1| integration host factor, beta subunit [Nitrococcus mobilis Nb-231] gi|88792284|gb|EAR23394.1| integration host factor, beta subunit [Nitrococcus mobilis Nb-231] Length = 107 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ + L+ KD V TL + + GE I+I F +F + + R+ Sbjct: 2 MTKSELIELIAANQQHLAYKDVELAVKTLIEHMSEVLSSGERIEIRGFGSFSLHHRPPRI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V + + V FK +++R+ Sbjct: 62 GRNPKTGDPVVLPGKYVPHFKPGKQMRERVNSS 94 >gi|118593738|ref|ZP_01551107.1| integration host factor subunit beta [Stappia aggregata IAM 12614] gi|118433648|gb|EAV40311.1| integration host factor subunit beta [Stappia aggregata IAM 12614] Length = 99 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+++ L ++D V + +E+ ++ +RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T Q+V++D + V FK ++ R+ D + Sbjct: 61 GRNPRTGQKVEVDEKFVPFFKTGKEMRIRLNDGV 94 >gi|251791422|ref|YP_003006143.1| transcriptional regulator HU subunit alpha [Dickeya zeae Ech1591] gi|271498813|ref|YP_003331838.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|307129002|ref|YP_003881018.1| HU, DNA-binding transcriptional regulator, subunit alpha [Dickeya dadantii 3937] gi|247540043|gb|ACT08664.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591] gi|270342368|gb|ACZ75133.1| histone family protein DNA-binding protein [Dickeya dadantii Ech586] gi|306526531|gb|ADM96461.1| HU, DNA-binding transcriptional regulator, alpha subunit [Dickeya dadantii 3937] Length = 90 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|126669094|ref|ZP_01740025.1| integration host factor, beta subunit [Marinobacter sp. ELB17] gi|126626449|gb|EAZ97115.1| integration host factor, beta subunit [Marinobacter sp. ELB17] Length = 98 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ I+ K+ LS KD V T+ + S G+ I+I F +F + + +RV Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSRSLADGQRIEIRGFGSFSLHHRAARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ V++ + V FK L++++ + ++ Sbjct: 61 GRNPKSGDAVQLPAKFVPHFKPGKELREQVNESLK 95 >gi|298529692|ref|ZP_07017095.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511128|gb|EFI35031.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 90 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++++ L++ DS + + + + D+ V+ + ++ F TF V+++ SR G Sbjct: 1 MTKADLVSKMAEKASLTKADSEKALNAFLDSVQDTLVKEGKLTLTGFGTFAVEERKSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +VV F+ ILK + Sbjct: 61 RNPRTGEEIKIPACKVVKFRPGKILKDAVK 90 >gi|163851479|ref|YP_001639522.1| histone family protein DNA-binding protein [Methylobacterium extorquens PA1] gi|218530287|ref|YP_002421103.1| histone family protein DNA-binding protein [Methylobacterium chloromethanicum CM4] gi|240138644|ref|YP_002963116.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Methylobacterium extorquens AM1] gi|254561242|ref|YP_003068337.1| integration host factor [Methylobacterium extorquens DM4] gi|226709732|sp|A9W4E5|IHFA_METEP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803518|sp|B7KYG6|IHFA_METC4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|163663084|gb|ABY30451.1| histone family protein DNA-binding protein [Methylobacterium extorquens PA1] gi|218522590|gb|ACK83175.1| histone family protein DNA-binding protein [Methylobacterium chloromethanicum CM4] gi|240008613|gb|ACS39839.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Methylobacterium extorquens AM1] gi|254268520|emb|CAX24477.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Methylobacterium extorquens DM4] Length = 108 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 46/105 (43%), Positives = 68/105 (64%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V T+ EIC GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLSEAVYQQVGLSRAESAALVETVLAEICTCLSSGETVKLSSFGSFVVRSKGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R+GRN +T EV+I+PR+V+VFK S++LK RI +D Sbjct: 63 RIGRNPKTGVEVEIEPRQVMVFKPSNVLKARINGGHVNGLDMDED 107 >gi|261401368|ref|ZP_05987493.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970] gi|313668345|ref|YP_004048629.1| DNA-binding protein [Neisseria lactamica ST-640] gi|269208663|gb|EEZ75118.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970] gi|313005807|emb|CBN87261.1| putative DNA-binding protein [Neisseria lactamica 020-06] Length = 89 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + D+ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89 >gi|188532334|ref|YP_001906131.1| transcriptional regulator HU subunit alpha [Erwinia tasmaniensis Et1/99] gi|292486747|ref|YP_003529617.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430] gi|188027376|emb|CAO95223.1| DNA-binding protein HU-alpha [Erwinia tasmaniensis Et1/99] gi|291552164|emb|CBA19201.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430] gi|312170813|emb|CBX79074.1| DNA-binding protein HU-alpha [Erwinia amylovora ATCC BAA-2158] Length = 90 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|27375853|ref|NP_767382.1| integration host factor subunit beta [Bradyrhizobium japonicum USDA 110] gi|81740124|sp|Q89WE8|IHFB_BRAJA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|27348991|dbj|BAC46007.1| integration host factor beta subunit [Bradyrhizobium japonicum USDA 110] Length = 101 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDHP 95 >gi|332527560|ref|ZP_08403607.1| putative integration host factor subunit beta (ihf-beta) protein [Rubrivivax benzoatilyticus JA2] gi|332111963|gb|EGJ11940.1| putative integration host factor subunit beta (ihf-beta) protein [Rubrivivax benzoatilyticus JA2] Length = 103 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV +++ L+++D+ V T+ + + D+ RG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVARLAERFSQLTQRDTEFAVKTILDAMTDALARGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN ++ ++V I + V FK L++ + + Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAVDARQPADR 98 >gi|110834697|ref|YP_693556.1| integration host factor subunit alpha [Alcanivorax borkumensis SK2] gi|123345421|sp|Q0VNG4|IHFA_ALCBS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|110647808|emb|CAL17284.1| Bacterial nucleoid DNA-binding protein [Alcanivorax borkumensis SK2] Length = 100 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 52/91 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + +E GL+++++ V F EI S +K+S F F ++ K R Sbjct: 3 ALTKADMAERLFEELGLNKREAKEMVEMFFEEIRHSLEDNIPVKLSGFGNFDLRDKSERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK+R+ Sbjct: 63 GRNPKTGEEIPITARRVVTFRPGQKLKQRVE 93 >gi|312898729|ref|ZP_07758118.1| putative integration host factor, beta subunit [Megasphaera micronuciformis F0359] gi|310620160|gb|EFQ03731.1| putative integration host factor, beta subunit [Megasphaera micronuciformis F0359] Length = 92 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F + ++ +G+ ++I F TF V+ + +R G Sbjct: 1 MNKTELIASVAQKSDLTKKDAEKAVKAVFEAVSETLKKGDKVQIIGFGTFEVRARKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN + N+ +KI + FKA LK + Sbjct: 61 RNPRNNEVIKIPASKTPAFKAGKQLKDLVNK 91 >gi|164688880|ref|ZP_02212908.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM 16795] gi|164602084|gb|EDQ95549.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM 16795] Length = 93 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++K++ + L I ++ V G+ +++ F TF +++ +R G Sbjct: 1 MNKAELVSRMAEKSELTKKEAEMALNALMESIQEALVSGDKVQLVGFGTFETRERAARKG 60 Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMDD 96 RN + QE+ I + VFKA LK+ I + Sbjct: 61 RNPRNPQQEIDIPASKAPVFKAGKSLKEAINEA 93 >gi|206972956|ref|ZP_03233878.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] gi|206731840|gb|EDZ49040.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] Length = 90 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L K ++++ L++KD+ L + I ++ GE ++I F TF V+++ +R G Sbjct: 1 MNKTKLTKVVAEKAELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKEAVK 90 >gi|126736963|ref|ZP_01752698.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6] gi|126721548|gb|EBA18251.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6] Length = 94 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ D+ RG+ +++ F F VKQ+ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRLNG 92 >gi|70731343|ref|YP_261084.1| DNA-binding protein HU subunit beta [Pseudomonas fluorescens Pf-5] gi|14194650|sp|Q9KHS6|DBHB_PSEF5 RecName: Full=DNA-binding protein HU-beta gi|7644386|gb|AAF65565.1|AF250140_2 histone-like protein HU [Pseudomonas fluorescens] gi|68345642|gb|AAY93248.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens Pf-5] Length = 90 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ L + + R + + + + G+++ + F TF V + +R+G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK+ + Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >gi|148975855|ref|ZP_01812644.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3] gi|145964600|gb|EDK29853.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3] Length = 91 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 45/88 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ I+ +S++ + + L I + G+ + I F +F V + +R G Sbjct: 1 MNKSQLVEHIATSADISKEQAGNALNALVEGISTTLANGDEVAILGFGSFKVNTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E++I + FKA LK+ Sbjct: 61 RNPRTGEEIQIAASKTPAFKAGKALKEA 88 >gi|88857365|ref|ZP_01132008.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] gi|88820562|gb|EAR30374.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas tunicata D2] Length = 91 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ I+ + +S+ ++R + + +S G ++ + F TF VK + +R G Sbjct: 1 MNKAQLVEKIATDAEISKAAASRALDAFTGAVSNSLKEGNSVALVGFGTFSVKARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK + Sbjct: 61 RNPQTGEEIQISAANIPSFKAGKGLKDSVN 90 >gi|323144209|ref|ZP_08078844.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] gi|322416050|gb|EFY06749.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066] Length = 92 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+K GLS S R + + + ++ G+ +++ F TF + ++ SR G Sbjct: 1 MNKSELIEQIAKRSGLSLAGSRRALDAVLASVSEALSEGDRVQLVGFGTFKITERNSREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + ++I + F A + LKK + Sbjct: 61 RNPKTGEVIQIPASKTPSFTAGAELKKAVNG 91 >gi|268592573|ref|ZP_06126794.1| integration host factor, alpha subunit [Providencia rettgeri DSM 1131] gi|291311987|gb|EFE52440.1| integration host factor, alpha subunit [Providencia rettgeri DSM 1131] Length = 98 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V T F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEKATP 96 >gi|198284326|ref|YP_002220647.1| integration host factor subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|218668129|ref|YP_002426987.1| integration host factor, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248847|gb|ACH84440.1| integration host factor, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520342|gb|ACK80928.1| integration host factor, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 99 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V + + GL+++++ V LF+ I ++ +GE +K+S F F ++ K R Sbjct: 2 AVTKAEIVDMLFESMGLNKREAKGIVEALFDGIRENLAKGEEVKLSGFGNFTLRDKNPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T E+ I RRVV F S LK + Sbjct: 62 GRNPKTGVEITITARRVVTFHPSQKLKAYVNGS 94 >gi|119946824|ref|YP_944504.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37] gi|119865428|gb|ABM04905.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37] Length = 91 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ L++ + + + + DS GE +++ F TF V + +R G Sbjct: 1 MNKTQLITDIAEKAELTKVQAKAALEQMMTSVTDSLKDGEPVQLIGFGTFKVNHRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +++I V F A LK+ + Sbjct: 61 RNPQTGADIQIKAANVPAFVAGKSLKEAVNK 91 >gi|92115698|ref|YP_575427.1| integration host factor subunit beta [Nitrobacter hamburgensis X14] gi|123083883|sp|Q1QS30|IHFB_NITHX RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91798592|gb|ABE60967.1| integration host factor, beta subunit [Nitrobacter hamburgensis X14] Length = 101 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T + V +D + V FK +++R+ + + + Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEAS 100 >gi|119503318|ref|ZP_01625402.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma proteobacterium HTCC2080] gi|119460964|gb|EAW42055.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma proteobacterium HTCC2080] Length = 91 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E LS+ + R + N I + + + + + F TF VK + +R G Sbjct: 1 MNKNELVDAIAEEADLSKASAGRALDAAINAITGALTKQDTVSLVGFGTFSVKHRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + ++I FKA LK + Sbjct: 61 RNPRSGETIQIKASNAPGFKAGKALKDAVN 90 >gi|157368539|ref|YP_001476528.1| transcriptional regulator HU subunit alpha [Serratia proteamaculans 568] gi|157320303|gb|ABV39400.1| histone family protein DNA-binding protein [Serratia proteamaculans 568] Length = 90 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|319792456|ref|YP_004154096.1| integration host factor, beta subunit [Variovorax paradoxus EPS] gi|315594919|gb|ADU35985.1| integration host factor, beta subunit [Variovorax paradoxus EPS] Length = 107 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ L+ +D+ V T+ + + D+ VRG I+I F +F V ++ R+ Sbjct: 1 MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVNRRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V+I +RV FK L++ + Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAV 90 >gi|299066734|emb|CBJ37928.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum CMR15] Length = 90 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V Q+ +R G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI+ +V FK LK + Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALKDALN 90 >gi|317046455|ref|YP_004114103.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] gi|316948072|gb|ADU67547.1| histone family protein DNA-binding protein [Pantoea sp. At-9b] Length = 90 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKTALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|212711444|ref|ZP_03319572.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens DSM 30120] gi|212685900|gb|EEB45428.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens DSM 30120] Length = 98 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V T F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSENLFEKLGVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVERATP 96 >gi|89094099|ref|ZP_01167042.1| integration host factor beta subunit [Oceanospirillum sp. MED92] gi|89081574|gb|EAR60803.1| integration host factor beta subunit [Oceanospirillum sp. MED92] Length = 96 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + LS KD V T+ + + +S G I+I F +F + + R Sbjct: 1 MTKSELIEILVDRHDQLSVKDIELSVKTMLDHMTESLSEGNRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V ++ + V FK L++++ D + Sbjct: 61 GRNPKTGESVSLEEKFVPHFKPGKELREQVNDSIN 95 >gi|85714140|ref|ZP_01045129.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A] gi|85699266|gb|EAQ37134.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A] Length = 101 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T + V +D + V FK +++R+ + + + Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEAS 100 >gi|239817235|ref|YP_002946145.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|239803812|gb|ACS20879.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] Length = 93 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ LS+ D+ R + ++ + VRGE +++ F TF V + R G Sbjct: 1 MNKTELIAAIAEDTNLSKADAGRAFDSALEQLSRALVRGETVQLIGFGTFSVADRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +++ I + F A LK I Sbjct: 61 RNPSTGEQITIKASKSAKFAAGKALKDAINQ 91 >gi|117925356|ref|YP_865973.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609112|gb|ABK44567.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 96 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 55/93 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D+V+++ GLS+K+S V ++F I GE +KI F F + K R Sbjct: 2 TMTKADIVQTVYHRLGLSKKESADVVESVFEIIRSQLESGEPVKIYGFGGFSMLDKKPRQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T ++V+I RRVV FKAS IL R+ Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRVNKG 94 >gi|262393794|ref|YP_003285648.1| integration host factor subunit beta [Vibrio sp. Ex25] gi|269966532|ref|ZP_06180615.1| integration host factor beta subunit [Vibrio alginolyticus 40B] gi|262337388|gb|ACY51183.1| integration host factor beta subunit [Vibrio sp. Ex25] gi|269828876|gb|EEZ83127.1| integration host factor beta subunit [Vibrio alginolyticus 40B] Length = 93 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|119505267|ref|ZP_01627342.1| integration host factor subunit alpha [marine gamma proteobacterium HTCC2080] gi|119458958|gb|EAW40058.1| integration host factor subunit alpha [marine gamma proteobacterium HTCC2080] Length = 104 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+S++ + +E GL+++++ V F EI E +K+S F F ++ K Sbjct: 1 MS-ALTKSEMADKLFEELGLNKREAKELVEQFFEEIRICLENNEQVKLSGFGNFDLRDKR 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN +T + + I RRVV F+ LK ++ Sbjct: 60 QRPGRNPKTGEAIPISARRVVTFRPGQKLKAKVEQ 94 >gi|78486002|ref|YP_391927.1| integration host factor, alpha subunit [Thiomicrospira crunogena XCL-2] gi|123755188|sp|Q31F20|IHFA_THICR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|78364288|gb|ABB42253.1| Histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2] Length = 97 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 59/92 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++S +FG ++++S V ++E+ + V+GE IK+S F F +K K +R Sbjct: 2 ALTKADIAETLSDKFGFNKRESKELVEQFYDEMSEVLVKGEQIKLSGFGNFELKDKSARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T ++V I RRVV FK L+ +I + Sbjct: 62 GRNPRTGEDVPISARRVVTFKPGQKLRAQIDN 93 >gi|15672484|ref|NP_266658.1| HU like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|116511328|ref|YP_808544.1| nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11] gi|125623363|ref|YP_001031846.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|281490996|ref|YP_003352976.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147] gi|14194595|sp|Q9CI64|DBH_LACLA RecName: Full=DNA-binding protein HU gi|12723384|gb|AAK04600.1|AE006285_8 HU like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|12830838|gb|AAK08212.1|AF320913_2 HllA [Lactococcus lactis] gi|12830846|gb|AAK08218.1|AF320915_2 HllA [Lactococcus lactis subsp. cremoris MG1363] gi|12830851|gb|AAK08222.1|AF320916_3 HllA [Lactococcus lactis] gi|116106982|gb|ABJ72122.1| bacterial nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11] gi|124492171|emb|CAL97100.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|281374754|gb|ADA64274.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis subsp. lactis KF147] gi|300070111|gb|ADJ59511.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326406030|gb|ADZ63101.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis CV56] Length = 91 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ ++ + GL++KDS + V + + +GE +++ F TF +++ +R GR Sbjct: 3 NKQDLIAEVAAKTGLTKKDSEKAVNAFGEVVTEFLAKGEKVQLIGFGTFETRERAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + +KI V FKA LK + Sbjct: 63 NPQTGEAIKIAATVVPAFKAGKALKDAVK 91 >gi|225420306|ref|ZP_03762609.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme DSM 15981] gi|225041123|gb|EEG51369.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme DSM 15981] Length = 91 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V+GE +++ F F V + +RV Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDVVTEELVKGEKVQLVGFGNFEVSARAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + ++ + FKA LK + + Sbjct: 61 RNPKTGEPMNVEASKTPKFKAGKALKDAVNN 91 >gi|255263556|ref|ZP_05342898.1| integration host factor, beta subunit [Thalassiobium sp. R2A62] gi|255105891|gb|EET48565.1| integration host factor, beta subunit [Thalassiobium sp. R2A62] Length = 93 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ + L ++D + V T+F+EI ++ G+ +++ F F VK++ +R Sbjct: 1 MIRSELVQKIADENPHLYQRDVEKIVNTIFDEITEAMADGDRVELRGFGAFSVKRRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FKA +L+ R+ Sbjct: 61 GRNPRTGESVHVEEKHVPFFKAGKLLRDRLNG 92 >gi|270265438|ref|ZP_06193697.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13] gi|1706309|sp|P52680|DBHA_SERMA RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|802006|gb|AAA65987.1| HU alpha [Serratia marcescens] gi|270040631|gb|EFA13736.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13] gi|1586262|prf||2203354A heterodimeric HU protein Length = 90 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|146329216|ref|YP_001209151.1| DNA-binding protein HU [Dichelobacter nodosus VCS1703A] gi|146232686|gb|ABQ13664.1| DNA-binding protein Hu [Dichelobacter nodosus VCS1703A] Length = 104 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ G+++ + + + + + +S V+G+ + + F TF +++ +R+G Sbjct: 1 MNKTELVDVIAEAAGITKAQAGKALDAFTDCVTESLVKGDKVTLIGFGTFETRERSARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I FKA LK + Sbjct: 61 HNPRTREKINIAASTTPAFKAGKKLKDAVNQ 91 >gi|86747764|ref|YP_484260.1| integration host factor subunit beta [Rhodopseudomonas palustris HaA2] gi|123004672|sp|Q2J2G1|IHFB_RHOP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|86570792|gb|ABD05349.1| integration host factor, beta subunit [Rhodopseudomonas palustris HaA2] Length = 101 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 6/106 (5%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN +T V +D + V FK +++R+ R+ D + Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLN-----RETGDTDTGA 101 >gi|316934097|ref|YP_004109079.1| integration host factor subunit alpha [Rhodopseudomonas palustris DX-1] gi|315601811|gb|ADU44346.1| integration host factor, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 118 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 49/95 (51%), Positives = 68/95 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR DL +++ ++ GLSR +S+ FV + EI D RGE +K+SSF +F V+QKG Sbjct: 3 GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T EV I PRRV+VFK S+ILK+RI + Sbjct: 63 RVGRNPKTGTEVPISPRRVMVFKPSAILKQRINAN 97 >gi|94495938|ref|ZP_01302517.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58] gi|94424630|gb|EAT09652.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58] Length = 96 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+TR+DL +S+++ GLSR ++ V ++ + + D+ RGE +KISSF TF ++ K Sbjct: 4 MS-TLTRADLAESLNRHVGLSRAEAAALVESILDHMSDALERGENVKISSFGTFVLRDKT 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+GRN +T EV I+PRRV+ F+AS ++ R+ Sbjct: 63 QRMGRNPKTGVEVPIEPRRVLTFRASQTMRDRVA 96 >gi|260773186|ref|ZP_05882102.1| integration host factor beta subunit [Vibrio metschnikovii CIP 69.14] gi|260612325|gb|EEX37528.1| integration host factor beta subunit [Vibrio metschnikovii CIP 69.14] Length = 94 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + + + LS K+ V + + + GE I+I F +F + + R+ Sbjct: 1 MTKSELIERLCAVQTHLSAKEIEDAVKDVLEHMSKTLEDGERIEIRGFGSFSLHYREPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T ++V+++ + V FK L++R+ ++ Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRERVNQNI 94 >gi|163741403|ref|ZP_02148794.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis 2.10] gi|161385137|gb|EDQ09515.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis 2.10] Length = 92 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 62/90 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S + V +L + D+ VRGE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91 >gi|330752075|emb|CBL80585.1| histone-like bacterial DNA-binding protein [uncultured Leeuwenhoekiella sp.] Length = 90 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++++ G+++ + + + + + S G+ + + F ++ V Q+ +R G Sbjct: 1 MNKSDLIDAMAESAGITKAAAKKALESFLGNVEKSLKSGDRVSLVGFGSWSVSQRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + VV FKA S L + Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDLSDAVN 90 >gi|162448780|ref|YP_001611147.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce 56'] gi|161159362|emb|CAN90667.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce 56'] Length = 114 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +I+ L++ + V +F+ + + R E I+I F +F V+ G Sbjct: 1 MTKSELIDAIAGRGELTKARAELVVNCVFDAMTQALQRNEGIEIRGFGSFTVRPYKPYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T Q V + +R+ FK LK+ + Sbjct: 61 RNPRTGQPVPVPAKRLPFFKVGKELKELVNAS 92 >gi|121605741|ref|YP_983070.1| integration host factor subunit alpha [Polaromonas naphthalenivorans CJ2] gi|166918514|sp|A1VR71|IHFA_POLNA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120594710|gb|ABM38149.1| integration host factor, alpha subunit [Polaromonas naphthalenivorans CJ2] Length = 123 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 55/95 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + ++ GL++++S + F I D V G+ +KIS F F ++ K Sbjct: 10 TPALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAP 69 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I+ RRVV F AS LK++I Sbjct: 70 RPGRNPRTGEAIPIESRRVVTFHASHKLKEQIQGS 104 >gi|261855913|ref|YP_003263196.1| integration host factor, subunit alpha [Halothiobacillus neapolitanus c2] gi|261836382|gb|ACX96149.1| integration host factor, alpha subunit [Halothiobacillus neapolitanus c2] Length = 100 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV+ + E GL+++++ FV F E+ + GE IK+S F F ++ K R Sbjct: 2 ALTKADLVEKLHAELGLNKREAKDFVDIFFEELRATLESGEEIKLSGFGNFQLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + + + RRVV F+A LK + Sbjct: 62 GRNPRTGEMIPVSARRVVTFRAGQKLKAMVE 92 >gi|50119198|ref|YP_048365.1| transcriptional regulator HU subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49609724|emb|CAG73158.1| DNA-binding protein HU-alpha [Pectobacterium atrosepticum SCRI1043] Length = 90 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|315123478|ref|YP_004065484.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp. SM9913] gi|315017238|gb|ADT70575.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp. SM9913] Length = 91 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ IS + +S+ +TR + + S G ++ + F TF VK++ +R G Sbjct: 1 MNKAQLVEKISTDAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I + FK LK ++ Sbjct: 61 RNPQTGAEIQISAATIPSFKPGKGLKDQVN 90 >gi|218702635|ref|YP_002410264.1| transcriptional regulator HU subunit alpha [Escherichia coli IAI39] gi|218372621|emb|CAR20496.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli IAI39] Length = 90 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKNQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|114707247|ref|ZP_01440145.1| histone-like protein [Fulvimarina pelagi HTCC2506] gi|114537443|gb|EAU40569.1| histone-like protein [Fulvimarina pelagi HTCC2506] Length = 91 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++S++ LS++ +T V +F I + G I++ F TF V + + G Sbjct: 1 MNKNELVSAVSEKADLSKQQATAAVDAVFGTIEKTLADGGDIRLVGFGTFAVTHRNASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDSVNK 91 >gi|78187799|ref|YP_375842.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273] gi|78167701|gb|ABB24799.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273] Length = 91 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + L++ D+ R V N + S G+ + + F TF + +R G Sbjct: 1 MSKAELVEKIAAQAKLTKVDAERAVNAFINVVTSSLKGGDDVTLVGFGTFTTGDRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV FK LK + Sbjct: 61 RNPQTGKAITIPAKKVVKFKPGKALKDEV 89 >gi|90419421|ref|ZP_01227331.1| integration host factor [Aurantimonas manganoxydans SI85-9A1] gi|90336358|gb|EAS50099.1| integration host factor [Aurantimonas manganoxydans SI85-9A1] Length = 123 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 70/98 (71%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+DL +++ ++ GLSR +S + V + +E+C + GE++KISSF +F V++K R Sbjct: 5 RTLTRADLSEAVFRKIGLSRTESAQLVEMVLDEMCSTIASGESVKISSFGSFLVREKNER 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +GRN +T +EV I PRRV VFK S++LK RI++ R Sbjct: 65 IGRNPKTGEEVPILPRRVAVFKPSNVLKDRIVEAHVQR 102 >gi|84387165|ref|ZP_00990187.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01] gi|84378026|gb|EAP94887.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01] Length = 91 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ I+ +S+ + + L I ++ +G+ + I F +F V + +R G Sbjct: 1 MNKSQLVEHIATSADISKDQAGSALNALVEGISNTLAKGDDVAILGFGSFKVNSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I + FKA LK+ Sbjct: 61 RNPRTGEEIQISASKTPAFKAGKALKE 87 >gi|310815851|ref|YP_003963815.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium vulgare Y25] gi|308754586|gb|ADO42515.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium vulgare Y25] Length = 99 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 47/95 (49%), Positives = 68/95 (71%), Gaps = 1/95 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR DL +++ + GLSR DS V T+ I D+ V GE++KISSF TF V++K Sbjct: 1 MSEKTLTRMDLAEAVHNKVGLSRNDSATLVETVLQHISDALVAGESVKISSFGTFSVREK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +RVGRN +T EV I+PRRV+ F++S ++K+R+ Sbjct: 61 SARVGRNPKTGIEVPINPRRVLTFRSSHLMKERVA 95 >gi|149914952|ref|ZP_01903481.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b] gi|149811140|gb|EDM70977.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b] Length = 92 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 42/90 (46%), Positives = 63/90 (70%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR DS V ++ + D+ VRGE +KISSF TF V++K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNDSAELVESVLAHMSDALVRGEQVKISSFGTFSVREKSARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I+PRRV+ F+ S ++K R+ D + Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVSDGNK 91 >gi|150388012|ref|YP_001318061.1| histone family protein DNA-binding protein [Alkaliphilus metalliredigens QYMF] gi|149947874|gb|ABR46402.1| histone family protein DNA-binding protein [Alkaliphilus metalliredigens QYMF] Length = 92 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++++ L++KD+ + + + ++ V G+ +++ F TF V+++ R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94 RN + ++ ++I + VFKA LK++I Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91 >gi|144899188|emb|CAM76052.1| Histone-like bacterial DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 104 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 46/97 (47%), Positives = 69/97 (71%), Gaps = 1/97 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS TITR+ L +++ +E GLSR +S+ + + E+ ++ +GEA+KISSF +F V+ K Sbjct: 1 MSDNTITRAQLSEAVYQEVGLSRNESSDLLEAVLEEVAEALAQGEAVKISSFGSFAVRSK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G R+GRN +T +EV I PRRV+VF+ S +LKK+I D Sbjct: 61 GQRIGRNPKTGEEVPILPRRVLVFRPSQLLKKKINDG 97 >gi|91974676|ref|YP_567335.1| integration host factor subunit beta [Rhodopseudomonas palustris BisB5] gi|123722247|sp|Q13EQ5|IHFB_RHOPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91681132|gb|ABE37434.1| integration host factor, beta subunit [Rhodopseudomonas palustris BisB5] Length = 101 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI D+ RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V +D + V FK +++R+ + Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRE 93 >gi|168183614|ref|ZP_02618278.1| DNA-binding protein HU [Clostridium botulinum Bf] gi|237796995|ref|YP_002864547.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657] gi|182673203|gb|EDT85164.1| DNA-binding protein HU [Clostridium botulinum Bf] gi|229261295|gb|ACQ52328.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657] Length = 93 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 53/92 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD+ + + ++ GE +++ F TF +++ RVG Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +E+ I VFKA LK+++ + Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVNKN 92 >gi|284924092|emb|CBG37191.1| DNA-binding protein HU-alpha [Escherichia coli 042] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|238918150|ref|YP_002931664.1| transcriptional regulator HU subunit alpha [Edwardsiella ictaluri 93-146] gi|238867718|gb|ACR67429.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|319404309|emb|CBI77902.1| integration host factor alpha subunit [Bartonella rochalimae ATCC BAA-1498] Length = 103 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 53/100 (53%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + +EIC+S VRGE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LKKRI+D R +K Sbjct: 63 RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102 >gi|237803593|ref|ZP_04591178.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025575|gb|EGI05631.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +RVG Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGKTLQIAAAKKPGFKAGKALKDAVN 90 >gi|146309880|ref|YP_001174954.1| transcriptional regulator HU subunit alpha [Enterobacter sp. 638] gi|261340912|ref|ZP_05968770.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|296100631|ref|YP_003610777.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|145316756|gb|ABP58903.1| bacterial nucleoid protein HU alpha subunit [Enterobacter sp. 638] gi|288316967|gb|EFC55905.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC 35316] gi|295055090|gb|ADF59828.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295095112|emb|CBK84202.1| bacterial nucleoid protein HU alpha subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|299139694|ref|ZP_07032867.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] gi|298598318|gb|EFI54483.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] Length = 117 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV + L+R+D V TLF+ I + G+ +++ F +F +Q+ R G Sbjct: 1 MTKAELVDHVIALGDLTRRDGEVIVDTLFDSIIGAVKSGDKVEVRGFGSFRTRQRKPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM--DDMRGRKCNKDDVTSP 110 RN +T V + +RV FK S L+ I + R + P Sbjct: 61 RNPKTGASVSVPAKRVPYFKPSKDLRDLINPGESKPVRAAKTQEPHQP 108 >gi|167629351|ref|YP_001679850.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1] gi|167592091|gb|ABZ83839.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1] Length = 91 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 50/88 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ L+ +D+ + V F + ++ G+ +++ F TF V+++ +R G Sbjct: 1 MNKAELVSAVAEKAQLTEEDAKKAVNAFFAVVQEALKAGDTVQLLGFGTFKVRERTAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + + I + FKA L+ Sbjct: 61 RNPQTGETIIIKASKTPTFKAGKSLRDA 88 >gi|242347958|ref|YP_002995519.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila] gi|224831777|gb|ACN66908.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TFHVK + +R G Sbjct: 1 MNKSELIMKVAEDADISKAQAEAAVNALINSVTEELKSGGTVALTGFGTFHVKARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDTVN 90 >gi|332971263|gb|EGK10226.1| DNA-binding protein HU [Desmospora sp. 8437] Length = 91 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K +++E G S+ ++ + V + ++I ++ RGE + + F F V+++ +R+ Sbjct: 1 MNKTELTKRVAQETGKSKTEAGQMVDVVLDQISEALQRGEKVSLFGFGNFEVRERAARMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + ++ +R+ FK LK+ + Sbjct: 61 RNPKTGETIHVEAKRIPAFKPGKQLKEVVNG 91 >gi|300022815|ref|YP_003755426.1| integration host factor, subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299524636|gb|ADJ23105.1| integration host factor, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 101 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 64/97 (65%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + KT+TR+DL +++ + GL R +S V + EI S G+ +K+SSF +F ++QKG Sbjct: 2 VGKTLTRADLAEAVVSKVGLPRNESQDLVERVLEEISGSLADGDPVKLSSFGSFGIRQKG 61 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RVGRN +T +EV I PRRV+VF+ S+I+K RI Sbjct: 62 ERVGRNPKTGEEVPITPRRVLVFRPSNIMKDRINKGH 98 >gi|253581050|ref|ZP_04858311.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847713|gb|EES75682.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 92 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++KE LS+KD + + + + G I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAKETNLSKKDVEDVLKSFVDVVSKELKNGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI+ + FKA LK + Sbjct: 61 RNPQTGETMKIEASKSPKFKAGKALKDMVNG 91 >gi|260913274|ref|ZP_05919756.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325] gi|260632861|gb|EEX51030.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S G+ +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGQPVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V F A LK + Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALKDAVK 90 >gi|260431167|ref|ZP_05785138.1| integration host factor, beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414995|gb|EEX08254.1| integration host factor, beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 94 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F EI D+ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEITDAMARGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRLNG 92 >gi|304321951|ref|YP_003855594.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula bermudensis HTCC2503] gi|303300853|gb|ADM10452.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula bermudensis HTCC2503] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ V ++ +++ D+ R V +F+ I ++ G+ ++I F TF ++ +R G Sbjct: 1 MNKNEFVDRVAAIADITKADAGRTVDAVFDAITEALKNGDDVRIVGFGTFSSSRRPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I F A LK + Sbjct: 61 RNPRTGETIQIKASNQPKFSAGKGLKDALN 90 >gi|326335932|ref|ZP_08202109.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691896|gb|EGD33858.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++E GL++ D+ + + + + +G+ I + F ++ V +K +R G Sbjct: 1 MNKTELIDAIAEEAGLTKADAKKALEAFLACVEKTLKKGDKISLVGFGSWSVAEKAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI ++VV FKA + L + Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTELSNAVN 90 >gi|209885010|ref|YP_002288867.1| integration host factor, alpha subunit [Oligotropha carboxidovorans OM5] gi|226709737|sp|B6JGR8|IHFA_OLICO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|209873206|gb|ACI93002.1| integration host factor, alpha subunit [Oligotropha carboxidovorans OM5] Length = 114 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 1/111 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGE 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 R+GRN +T EV I PRRV+VFK S+ILK+RI + K N D +G Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINNG-AAAKTNGDVAKVAAG 114 >gi|163739054|ref|ZP_02146467.1| integration host factor beta subunit [Phaeobacter gallaeciensis BS107] gi|163741705|ref|ZP_02149095.1| integration host factor subunit beta [Phaeobacter gallaeciensis 2.10] gi|254476014|ref|ZP_05089400.1| integration host factor, beta subunit [Ruegeria sp. R11] gi|161384878|gb|EDQ09257.1| integration host factor subunit beta [Phaeobacter gallaeciensis 2.10] gi|161387859|gb|EDQ12215.1| integration host factor beta subunit [Phaeobacter gallaeciensis BS107] gi|214030257|gb|EEB71092.1| integration host factor, beta subunit [Ruegeria sp. R11] Length = 94 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ D+ RG+ +++ F F VKQ+ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92 >gi|256375007|ref|YP_003098667.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] gi|255919310|gb|ACU34821.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ + + +TR + + + I + +G+ + ++ F +F VK++ +R G Sbjct: 1 MNKAELVSAIAEGADVEKAVATRALDAVLDSITKALAQGDDVVLTGFGSFTVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + V FK LK + Sbjct: 61 RNPQTGEAIEIAASKAVGFKVGKALKDAVN 90 >gi|157373740|ref|YP_001472340.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316114|gb|ABV35212.1| histone family protein DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ ++ R + + + ++ G+ I I F +F + +R G Sbjct: 1 MNKTELVAKIAENAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90 >gi|114330676|ref|YP_746898.1| histone family protein DNA-binding protein [Nitrosomonas eutropha C91] gi|114307690|gb|ABI58933.1| histone family protein DNA-binding protein [Nitrosomonas eutropha C91] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++ +++ ++ + + I D+ + +++ + F TF V ++ +R G Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+KI +V F A LK + Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >gi|293374971|ref|ZP_06621266.1| DNA-binding protein HU [Turicibacter sanguinis PC909] gi|325843341|ref|ZP_08167924.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1] gi|292646381|gb|EFF64396.1| DNA-binding protein HU [Turicibacter sanguinis PC909] gi|325489370|gb|EGC91743.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS LV I+++ L++KD+ +F++ + ++ + + + F TF V+++ +R G Sbjct: 1 MNRSQLVDKIAEKAELTKKDADKFLSAYIEAVTEALQADDKVALVGFGTFEVRERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RNL T + ++I+ + FKA LK + Sbjct: 61 RNLHTGETIEIEASKYPAFKAGKALKDALK 90 >gi|291529702|emb|CBK95288.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale M104/1] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++++ GL+ KD V + ++ V+G+ +++ F TF V ++ +R+G Sbjct: 1 MTKAELVSAMAEKTGLTNKDVAAAVNAFTESVKEALVKGDKVQLVGFGTFEVAERAARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + ++I + +K SS LK + Sbjct: 61 RNPSTGESIQIAASKTAKWKPSSALKSDLN 90 >gi|209548801|ref|YP_002280718.1| integration host factor subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226709743|sp|B5ZXV9|IHFA_RHILW RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|209534557|gb|ACI54492.1| integration host factor, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 112 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 51/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +E+C++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVARKVK 104 >gi|145301241|ref|YP_001144081.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] gi|142856018|gb|ABO92333.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp. salmonicida A449] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +I++ +++ + V L I G ++ ++ F TF V+ + +R G Sbjct: 1 MNKSDLIMAIAESADITKAKAEAAVNALMATITTELKEGGSVALTGFGTFQVRARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +++ + FKA LK + Sbjct: 61 RNPQTGEAIEVAAANIPSFKAGKSLKDAVN 90 >gi|77919025|ref|YP_356840.1| integration host factor subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77545108|gb|ABA88670.1| integration host factor, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 93 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 60/91 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ + + G S+K+S+ V +F+ + ++ +GE IK++ F F VKQK +R G Sbjct: 1 MTKADLVEKVYLKTGFSKKESSDIVEMVFDLMKNTLEKGEKIKLAGFGNFVVKQKATRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I R ++ FK S +LK I + Sbjct: 61 RNPQTGEEIEISSRNILTFKPSQVLKAAINE 91 >gi|85705352|ref|ZP_01036451.1| integration host factor, beta subunit [Roseovarius sp. 217] gi|85670225|gb|EAQ25087.1| integration host factor, beta subunit [Roseovarius sp. 217] Length = 93 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+FN I D+ G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFNAITDALAEGNRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVHVEEKYVPFFKTGKLLRDRLNG 92 >gi|238765544|ref|ZP_04626458.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638] gi|238696239|gb|EEP89042.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638] Length = 91 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|225027811|ref|ZP_03717003.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353] gi|224954861|gb|EEG36070.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353] Length = 91 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++ L++KD+ + + + + D +GE I+++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAERTELTKKDADQALKAFIDVVGDELSKGEKIQLAGFGTFEVTERAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + + I + FKA LK+++ + Sbjct: 61 INPRTKETIHIPASKAPKFKAMKSLKEKVNN 91 >gi|209548853|ref|YP_002280770.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534609|gb|ACI54544.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 91 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F+ + I+++ F +F V + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQGELKNKGDIRLAGFGSFTVSHRAASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91 >gi|154250603|ref|YP_001411427.1| integration host factor subunit beta [Parvibaculum lavamentivorans DS-1] gi|171769416|sp|A7HPD7|IHFB_PARL1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|154154553|gb|ABS61770.1| integration host factor, beta subunit [Parvibaculum lavamentivorans DS-1] Length = 110 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV +++ L ++D R V+T+F+EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V +D + V FK L++R+ + Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLNNA 93 >gi|15603597|ref|NP_246671.1| hypothetical protein PM1732 [Pasteurella multocida subsp. multocida str. Pm70] gi|14194596|sp|Q9CK94|DBH_PASMU RecName: Full=DNA-binding protein HU gi|12722146|gb|AAK03816.1| HupA [Pasteurella multocida subsp. multocida str. Pm70] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S GE +++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLEAISGSLKAGEPVQLIGFGTFKVNSRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V F A LK + Sbjct: 61 RNPQTGAEIKIAASKVPAFVAGKALKDAVK 90 >gi|86138658|ref|ZP_01057231.1| integration host factor, alpha subunit [Roseobacter sp. MED193] gi|85824718|gb|EAQ44920.1| integration host factor, alpha subunit [Roseobacter sp. MED193] Length = 92 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 62/90 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S + V ++ + D+ V+GE +KISSF TF V+ K +R+GRN + Sbjct: 2 DLSEAVFREVGLSRNESAQLVESMLQHMSDALVQGEQVKISSFGTFSVRDKSARIGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I PRRV+ F+ S ++K R+ D R Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKDRVADGNR 91 >gi|238790629|ref|ZP_04634394.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641] gi|238721298|gb|EEQ12973.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641] Length = 90 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+ +++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSVK 90 >gi|330720371|gb|EGG98704.1| Integration host factor beta subunit [gamma proteobacterium IMCC2047] Length = 98 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I+ ++ LS KD V T+ + + S GE I+I F +F + + R Sbjct: 1 MTKSELIENIAAQQTQLSIKDVELSVKTIIDMMTQSLSSGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +V++ + V FK L++++ + Sbjct: 61 GRNPKTGDQVQLTGKYVPHFKPGKDLREQVDESREN 96 >gi|237653695|ref|YP_002890009.1| integration host factor subunit beta [Thauera sp. MZ1T] gi|237624942|gb|ACR01632.1| integration host factor, beta subunit [Thauera sp. MZ1T] Length = 95 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ RG+ I+I F +F + + R Sbjct: 1 MTKSELIAQLAERFPQLVAKDADYAVKMILDAMTDALARGDRIEIRGFGSFALNYRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA L++R+ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKAGKELRERV 90 >gi|120611517|ref|YP_971195.1| integration host factor subunit alpha [Acidovorax citrulli AAC00-1] gi|120589981|gb|ABM33421.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] Length = 122 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + + GL++++S + F+ I V G+ +KIS F F ++ K Sbjct: 23 TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 82 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS+ LK++I Sbjct: 83 RPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQSG 117 >gi|15804591|ref|NP_290632.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 EDL933] gi|15834177|ref|NP_312950.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|16131830|ref|NP_418428.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|24115284|ref|NP_709794.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a str. 301] gi|26250771|ref|NP_756811.1| transcriptional regulator HU subunit alpha [Escherichia coli CFT073] gi|30064718|ref|NP_838889.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a str. 2457T] gi|74314494|ref|YP_312913.1| transcriptional regulator HU subunit alpha [Shigella sonnei Ss046] gi|82546342|ref|YP_410289.1| transcriptional regulator HU subunit alpha [Shigella boydii Sb227] gi|82778824|ref|YP_405173.1| transcriptional regulator HU subunit alpha [Shigella dysenteriae Sd197] gi|89110038|ref|AP_003818.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|91212793|ref|YP_542779.1| transcriptional regulator HU subunit alpha [Escherichia coli UTI89] gi|110644335|ref|YP_672065.1| transcriptional regulator HU subunit alpha [Escherichia coli 536] gi|110807850|ref|YP_691370.1| transcriptional regulator HU subunit alpha [Shigella flexneri 5 str. 8401] gi|117626262|ref|YP_859585.1| transcriptional regulator HU subunit alpha [Escherichia coli APEC O1] gi|157157657|ref|YP_001465495.1| transcriptional regulator HU subunit alpha [Escherichia coli E24377A] gi|157163469|ref|YP_001460787.1| transcriptional regulator HU subunit alpha [Escherichia coli HS] gi|168752035|ref|ZP_02777057.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4113] gi|168758604|ref|ZP_02783611.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4401] gi|168764580|ref|ZP_02789587.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4501] gi|168771472|ref|ZP_02796479.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4486] gi|168777387|ref|ZP_02802394.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4196] gi|168780385|ref|ZP_02805392.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4076] gi|168790360|ref|ZP_02815367.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC869] gi|168798366|ref|ZP_02823373.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC508] gi|170021997|ref|YP_001726951.1| transcriptional regulator HU subunit alpha [Escherichia coli ATCC 8739] gi|170083461|ref|YP_001732781.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170682013|ref|YP_001746384.1| transcriptional regulator HU subunit alpha [Escherichia coli SMS-3-5] gi|170770125|ref|ZP_02904578.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627] gi|187733664|ref|YP_001882686.1| transcriptional regulator HU subunit alpha [Shigella boydii CDC 3083-94] gi|188494754|ref|ZP_03002024.1| DNA-binding protein HU-alpha [Escherichia coli 53638] gi|191168661|ref|ZP_03030442.1| DNA-binding protein HU-alpha [Escherichia coli B7A] gi|191174297|ref|ZP_03035805.1| DNA-binding protein HU-alpha [Escherichia coli F11] gi|193066426|ref|ZP_03047473.1| DNA-binding protein HU-alpha [Escherichia coli E22] gi|193067891|ref|ZP_03048857.1| DNA-binding protein HU-alpha [Escherichia coli E110019] gi|194429963|ref|ZP_03062472.1| DNA-binding protein HU-alpha [Escherichia coli B171] gi|194434756|ref|ZP_03067007.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012] gi|194439785|ref|ZP_03071852.1| DNA-binding protein HU-alpha [Escherichia coli 101-1] gi|195939626|ref|ZP_03085008.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208808153|ref|ZP_03250490.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4206] gi|208813268|ref|ZP_03254597.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4045] gi|208820185|ref|ZP_03260505.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4042] gi|209397488|ref|YP_002273516.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4115] gi|209921479|ref|YP_002295563.1| transcriptional regulator HU subunit alpha [Escherichia coli SE11] gi|215489332|ref|YP_002331763.1| transcriptional regulator HU subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|217324933|ref|ZP_03441017.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. TW14588] gi|218551016|ref|YP_002384807.1| transcriptional regulator HU subunit alpha [Escherichia fergusonii ATCC 35469] gi|218556555|ref|YP_002389469.1| transcriptional regulator HU subunit alpha [Escherichia coli IAI1] gi|218561066|ref|YP_002393979.1| transcriptional regulator HU subunit alpha [Escherichia coli S88] gi|218692281|ref|YP_002400493.1| transcriptional regulator HU subunit alpha [Escherichia coli ED1a] gi|218697708|ref|YP_002405375.1| transcriptional regulator HU subunit alpha [Escherichia coli 55989] gi|218707619|ref|YP_002415138.1| transcriptional regulator HU subunit alpha [Escherichia coli UMN026] gi|227885470|ref|ZP_04003275.1| DNA-binding protein HU-alpha [Escherichia coli 83972] gi|237702767|ref|ZP_04533248.1| transcriptional regulator HU subunit alpha [Escherichia sp. 3_2_53FAA] gi|238903057|ref|YP_002928853.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli BW2952] gi|253775370|ref|YP_003038201.1| transcriptional regulator HU subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039257|ref|ZP_04873306.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43] gi|254163942|ref|YP_003047050.1| transcriptional regulator HU subunit alpha [Escherichia coli B str. REL606] gi|254795998|ref|YP_003080835.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|256021679|ref|ZP_05435544.1| transcriptional regulator HU subunit alpha [Shigella sp. D9] gi|256026316|ref|ZP_05440181.1| transcriptional regulator HU subunit alpha [Escherichia sp. 4_1_40B] gi|260846800|ref|YP_003224578.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|260858110|ref|YP_003232001.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|260870711|ref|YP_003237113.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O111:H- str. 11128] gi|261227288|ref|ZP_05941569.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261257035|ref|ZP_05949568.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285415|ref|YP_003502233.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str. CB9615] gi|293407617|ref|ZP_06651535.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1412] gi|293413436|ref|ZP_06656096.1| transcriptional regulator HU subunit beta [Escherichia coli B354] gi|293417502|ref|ZP_06660125.1| DNA-binding protein HU-alpha [Escherichia coli B185] gi|293474307|ref|ZP_06664716.1| transcriptional regulator HU subunit beta [Escherichia coli B088] gi|298383365|ref|ZP_06992957.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1302] gi|300819812|ref|ZP_07099999.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300824619|ref|ZP_07104727.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300897585|ref|ZP_07115994.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300907554|ref|ZP_07125192.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300919418|ref|ZP_07135922.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300925869|ref|ZP_07141712.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300928819|ref|ZP_07144327.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300938775|ref|ZP_07153488.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300947393|ref|ZP_07161586.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300954769|ref|ZP_07167199.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300979674|ref|ZP_07174646.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300985441|ref|ZP_07177444.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|301019441|ref|ZP_07183614.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|301023370|ref|ZP_07187160.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|301047735|ref|ZP_07194793.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|301302187|ref|ZP_07208319.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|301325708|ref|ZP_07219167.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301645744|ref|ZP_07245665.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|306812015|ref|ZP_07446223.1| transcriptional regulator HU subunit alpha [Escherichia coli NC101] gi|307140692|ref|ZP_07500048.1| transcriptional regulator HU subunit alpha [Escherichia coli H736] gi|307315027|ref|ZP_07594613.1| histone family protein DNA-binding protein [Escherichia coli W] gi|309783956|ref|ZP_07678601.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617] gi|309797704|ref|ZP_07692090.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|312965347|ref|ZP_07779580.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75] gi|312974214|ref|ZP_07788384.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70] gi|331644736|ref|ZP_08345854.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736] gi|331649853|ref|ZP_08350931.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605] gi|331655700|ref|ZP_08356690.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718] gi|331660560|ref|ZP_08361493.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA206] gi|331665656|ref|ZP_08366552.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA143] gi|331670854|ref|ZP_08371689.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA271] gi|331675486|ref|ZP_08376235.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA280] gi|331680123|ref|ZP_08380784.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591] gi|331685742|ref|ZP_08386324.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299] gi|332282922|ref|ZP_08395335.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella sp. D9] gi|82581650|sp|P0ACF2|DBHA_ECO57 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|82581651|sp|P0ACF1|DBHA_ECOL6 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|82581652|sp|P0ACF0|DBHA_ECOLI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|82581653|sp|P0ACF3|DBHA_SHIFL RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|34810779|pdb|1MUL|A Chain A, Crystal Structure Of The E. Coli Hu Alpha2 Protein gi|134105078|pdb|2O97|A Chain A, Crystal Structure Of E. Coli Hu Heterodimer gi|12518929|gb|AAG59197.1|AE005631_12 DNA-binding protein HU-alpha (HU-2) [Escherichia coli O157:H7 str. EDL933] gi|26111202|gb|AAN83385.1|AE016770_185 DNA-binding protein HU-alpha [Escherichia coli CFT073] gi|41765|emb|CAA29412.1| unnamed protein product [Escherichia coli] gi|396339|gb|AAC43098.1| histonelike DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli str. K-12 substr. MG1655] gi|1790433|gb|AAC76974.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|13364399|dbj|BAB38346.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. Sakai] gi|24054578|gb|AAN45501.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str. 301] gi|30042978|gb|AAP18700.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str. 2457T] gi|73857971|gb|AAZ90678.1| DNA-binding protein HU-alpha [Shigella sonnei Ss046] gi|81242972|gb|ABB63682.1| DNA-binding protein HU-alpha [Shigella dysenteriae Sd197] gi|81247753|gb|ABB68461.1| DNA-binding protein HU-alpha [Shigella boydii Sb227] gi|85676069|dbj|BAE77319.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|91074367|gb|ABE09248.1| DNA-binding protein HU-alpha (HU-2) [Escherichia coli UTI89] gi|110345927|gb|ABG72164.1| DNA-binding protein HU-alpha [Escherichia coli 536] gi|110617398|gb|ABF06065.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 5 str. 8401] gi|115515386|gb|ABJ03461.1| DNA-binding protein HU-alpha [Escherichia coli APEC O1] gi|157069149|gb|ABV08404.1| DNA-binding protein HU-alpha [Escherichia coli HS] gi|157079687|gb|ABV19395.1| DNA-binding protein HU-alpha [Escherichia coli E24377A] gi|169756925|gb|ACA79624.1| histone family protein DNA-binding protein [Escherichia coli ATCC 8739] gi|169891296|gb|ACB05003.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|170121007|gb|EDS89938.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627] gi|170519731|gb|ACB17909.1| DNA-binding protein HU-alpha [Escherichia coli SMS-3-5] gi|187430656|gb|ACD09930.1| DNA-binding protein HU-alpha [Shigella boydii CDC 3083-94] gi|187767348|gb|EDU31192.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4196] gi|188014035|gb|EDU52157.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4113] gi|188489953|gb|EDU65056.1| DNA-binding protein HU-alpha [Escherichia coli 53638] gi|189001743|gb|EDU70729.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4076] gi|189354599|gb|EDU73018.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4401] gi|189359757|gb|EDU78176.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4486] gi|189365455|gb|EDU83871.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4501] gi|189370167|gb|EDU88583.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC869] gi|189379196|gb|EDU97612.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC508] gi|190901301|gb|EDV61069.1| DNA-binding protein HU-alpha [Escherichia coli B7A] gi|190905429|gb|EDV65060.1| DNA-binding protein HU-alpha [Escherichia coli F11] gi|192925950|gb|EDV80597.1| DNA-binding protein HU-alpha [Escherichia coli E22] gi|192958866|gb|EDV89303.1| DNA-binding protein HU-alpha [Escherichia coli E110019] gi|194411992|gb|EDX28305.1| DNA-binding protein HU-alpha [Escherichia coli B171] gi|194416980|gb|EDX33098.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012] gi|194421282|gb|EDX37302.1| DNA-binding protein HU-alpha [Escherichia coli 101-1] gi|208727954|gb|EDZ77555.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4206] gi|208734545|gb|EDZ83232.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4045] gi|208740308|gb|EDZ87990.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4042] gi|209158888|gb|ACI36321.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC4115] gi|209751678|gb|ACI74146.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751680|gb|ACI74147.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751682|gb|ACI74148.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751684|gb|ACI74149.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209751686|gb|ACI74150.1| DNA-binding protein HU-alpha [Escherichia coli] gi|209914738|dbj|BAG79812.1| DNA-binding protein [Escherichia coli SE11] gi|215267404|emb|CAS11855.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O127:H6 str. E2348/69] gi|217321154|gb|EEC29578.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. TW14588] gi|218354440|emb|CAV01252.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli 55989] gi|218358557|emb|CAQ91205.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia fergusonii ATCC 35469] gi|218363324|emb|CAR00974.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli IAI1] gi|218367835|emb|CAR05630.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli S88] gi|218429845|emb|CAR10671.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli ED1a] gi|218434716|emb|CAR15648.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli UMN026] gi|222035711|emb|CAP78456.1| DNA-binding protein HU-alpha [Escherichia coli LF82] gi|226838492|gb|EEH70522.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43] gi|226903080|gb|EEH89339.1| transcriptional regulator HU subunit alpha [Escherichia sp. 3_2_53FAA] gi|227837544|gb|EEJ48010.1| DNA-binding protein HU-alpha [Escherichia coli 83972] gi|238861437|gb|ACR63435.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli BW2952] gi|242379531|emb|CAQ34347.1| transcriptional dual regulator HU-alpha (HU-2), subunit of HU transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253326414|gb|ACT31016.1| histone family protein DNA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975843|gb|ACT41514.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli B str. REL606] gi|253979999|gb|ACT45669.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli BL21(DE3)] gi|254595398|gb|ACT74759.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|257756759|dbj|BAI28261.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257761947|dbj|BAI33444.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|257767067|dbj|BAI38562.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli O111:H- str. 11128] gi|260451172|gb|ACX41594.1| histone family protein DNA-binding protein [Escherichia coli DH1] gi|281181064|dbj|BAI57394.1| DNA-binding protein [Escherichia coli SE15] gi|281603384|gb|ADA76368.1| DNA-binding protein HU-alpha [Shigella flexneri 2002017] gi|290765288|gb|ADD59249.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str. CB9615] gi|291321337|gb|EFE60778.1| transcriptional regulator HU subunit beta [Escherichia coli B088] gi|291425385|gb|EFE98425.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1412] gi|291430829|gb|EFF03826.1| DNA-binding protein HU-alpha [Escherichia coli B185] gi|291468031|gb|EFF10530.1| transcriptional regulator HU subunit beta [Escherichia coli B354] gi|294490664|gb|ADE89420.1| DNA-binding protein HU-alpha [Escherichia coli IHE3034] gi|298276244|gb|EFI17765.1| transcriptional regulator HU subunit beta [Escherichia coli FVEC1302] gi|299880890|gb|EFI89101.1| DNA-binding protein HU [Escherichia coli MS 196-1] gi|300300380|gb|EFJ56765.1| DNA-binding protein HU [Escherichia coli MS 185-1] gi|300306533|gb|EFJ61053.1| DNA-binding protein HU [Escherichia coli MS 200-1] gi|300318268|gb|EFJ68052.1| DNA-binding protein HU [Escherichia coli MS 175-1] gi|300358661|gb|EFJ74531.1| DNA-binding protein HU [Escherichia coli MS 198-1] gi|300399256|gb|EFJ82794.1| DNA-binding protein HU [Escherichia coli MS 69-1] gi|300400721|gb|EFJ84259.1| DNA-binding protein HU [Escherichia coli MS 84-1] gi|300409458|gb|EFJ92996.1| DNA-binding protein HU [Escherichia coli MS 45-1] gi|300413511|gb|EFJ96821.1| DNA-binding protein HU [Escherichia coli MS 115-1] gi|300418059|gb|EFK01370.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|300452997|gb|EFK16617.1| DNA-binding protein HU [Escherichia coli MS 116-1] gi|300456285|gb|EFK19778.1| DNA-binding protein HU [Escherichia coli MS 21-1] gi|300463200|gb|EFK26693.1| DNA-binding protein HU [Escherichia coli MS 187-1] gi|300522868|gb|EFK43937.1| DNA-binding protein HU [Escherichia coli MS 119-7] gi|300527633|gb|EFK48695.1| DNA-binding protein HU [Escherichia coli MS 107-1] gi|300842350|gb|EFK70110.1| DNA-binding protein HU [Escherichia coli MS 124-1] gi|300847497|gb|EFK75257.1| DNA-binding protein HU [Escherichia coli MS 78-1] gi|301075993|gb|EFK90799.1| DNA-binding protein HU [Escherichia coli MS 146-1] gi|305854620|gb|EFM55056.1| transcriptional regulator HU subunit alpha [Escherichia coli NC101] gi|306905532|gb|EFN36065.1| histone family protein DNA-binding protein [Escherichia coli W] gi|307556143|gb|ADN48918.1| DNA-binding protein HU-alpha [Escherichia coli ABU 83972] gi|307628383|gb|ADN72687.1| transcriptional regulator HU subunit alpha [Escherichia coli UM146] gi|308118716|gb|EFO55978.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|308928327|gb|EFP73789.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617] gi|309704416|emb|CBJ03765.1| DNA-binding protein HU-alpha [Escherichia coli ETEC H10407] gi|310331381|gb|EFP98646.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70] gi|312290021|gb|EFR17908.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75] gi|312948574|gb|ADR29401.1| transcriptional regulator HU subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|313648650|gb|EFS13090.1| DNA-binding protein HU-alpha [Shigella flexneri 2a str. 2457T] gi|315063325|gb|ADT77652.1| HU, DNA-binding transcriptional regulator, alpha subunit [Escherichia coli W] gi|315138557|dbj|BAJ45716.1| DNA-binding protein HU-alpha [Escherichia coli DH1] gi|315252732|gb|EFU32700.1| DNA-binding protein HU [Escherichia coli MS 85-1] gi|315288345|gb|EFU47744.1| DNA-binding protein HU [Escherichia coli MS 110-3] gi|315294343|gb|EFU53694.1| DNA-binding protein HU [Escherichia coli MS 153-1] gi|315300743|gb|EFU59968.1| DNA-binding protein HU [Escherichia coli MS 16-3] gi|315617364|gb|EFU97970.1| DNA-binding protein HU-alpha [Escherichia coli 3431] gi|320172738|gb|EFW47972.1| DNA-binding protein HU-alpha [Shigella dysenteriae CDC 74-1112] gi|320179537|gb|EFW54488.1| DNA-binding protein HU-alpha [Shigella boydii ATCC 9905] gi|320185960|gb|EFW60708.1| DNA-binding protein HU-alpha [Shigella flexneri CDC 796-83] gi|320190903|gb|EFW65553.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. EC1212] gi|320197105|gb|EFW71723.1| DNA-binding protein HU-alpha [Escherichia coli WV_060327] gi|320200160|gb|EFW74749.1| DNA-binding protein HU-alpha [Escherichia coli EC4100B] gi|320639091|gb|EFX08731.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. G5101] gi|320644485|gb|EFX13548.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320649804|gb|EFX18325.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320655137|gb|EFX23093.1| transcriptional regulator HU subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660781|gb|EFX28235.1| transcriptional regulator HU subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320665899|gb|EFX32930.1| transcriptional regulator HU subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|323155552|gb|EFZ41729.1| DNA-binding protein HU-alpha [Escherichia coli EPECa14] gi|323161308|gb|EFZ47217.1| DNA-binding protein HU-alpha [Escherichia coli E128010] gi|323167470|gb|EFZ53178.1| DNA-binding protein HU-alpha [Shigella sonnei 53G] gi|323174488|gb|EFZ60113.1| DNA-binding protein HU-alpha [Escherichia coli LT-68] gi|323177555|gb|EFZ63140.1| DNA-binding protein HU-alpha [Escherichia coli 1180] gi|323182099|gb|EFZ67509.1| DNA-binding protein HU-alpha [Escherichia coli 1357] gi|323190143|gb|EFZ75421.1| DNA-binding protein HU-alpha [Escherichia coli RN587/1] gi|323380611|gb|ADX52879.1| histone family protein DNA-binding protein [Escherichia coli KO11] gi|323933958|gb|EGB30432.1| bacterial DNA-binding protein [Escherichia coli E1520] gi|323938883|gb|EGB35103.1| DNA-binding protein [Escherichia coli E482] gi|323943611|gb|EGB39719.1| bacterial DNA-binding protein [Escherichia coli H120] gi|323948829|gb|EGB44726.1| DNA-binding protein [Escherichia coli H252] gi|323953788|gb|EGB49595.1| DNA-binding protein [Escherichia coli H263] gi|323958927|gb|EGB54602.1| DNA-binding protein [Escherichia coli H489] gi|323963781|gb|EGB59280.1| DNA-binding protein [Escherichia coli M863] gi|323969074|gb|EGB64382.1| DNA-binding protein [Escherichia coli TA007] gi|323974200|gb|EGB69332.1| DNA-binding protein [Escherichia coli TW10509] gi|324009499|gb|EGB78718.1| DNA-binding protein HU [Escherichia coli MS 57-2] gi|324015254|gb|EGB84473.1| DNA-binding protein HU [Escherichia coli MS 60-1] gi|324017347|gb|EGB86566.1| DNA-binding protein HU [Escherichia coli MS 117-3] gi|324110912|gb|EGC04904.1| DNA-binding protein [Escherichia fergusonii B253] gi|324115432|gb|EGC09377.1| DNA-binding protein [Escherichia coli E1167] gi|325499268|gb|EGC97127.1| transcriptional regulator HU subunit alpha [Escherichia fergusonii ECD227] gi|326347149|gb|EGD70879.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1125] gi|326347600|gb|EGD71322.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1044] gi|330908315|gb|EGH36834.1| DNA-binding protein HU-alpha [Escherichia coli AA86] gi|331036036|gb|EGI08273.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736] gi|331041319|gb|EGI13471.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605] gi|331046625|gb|EGI18712.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718] gi|331052343|gb|EGI24381.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA206] gi|331057174|gb|EGI29166.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA143] gi|331061942|gb|EGI33866.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA271] gi|331067364|gb|EGI38770.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli TA280] gi|331072278|gb|EGI43612.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591] gi|331077052|gb|EGI48268.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299] gi|332083889|gb|EGI89102.1| DNA-binding protein HU-alpha [Shigella boydii 5216-82] gi|332085398|gb|EGI90568.1| DNA-binding protein HU-alpha [Shigella dysenteriae 155-74] gi|332092305|gb|EGI97380.1| DNA-binding protein HU-alpha [Shigella boydii 3594-74] gi|332105274|gb|EGJ08620.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella sp. D9] gi|332345990|gb|AEE59324.1| DNA-binding protein HU-alpha [Escherichia coli UMNK88] gi|332749197|gb|EGJ79619.1| DNA-binding protein HU-alpha [Shigella flexneri 2747-71] gi|332751446|gb|EGJ81848.1| DNA-binding protein HU-alpha [Shigella flexneri 4343-70] gi|332762844|gb|EGJ93103.1| DNA-binding protein HU-&alpha [Shigella flexneri 2930-71] gi|332765544|gb|EGJ95758.1| DNA-binding protein HU-alpha [Shigella flexneri K-671] gi|332998960|gb|EGK18550.1| DNA-binding protein HU-alpha [Shigella flexneri K-218] gi|333010733|gb|EGK30161.1| DNA-binding protein HU-alpha [Shigella flexneri VA-6] gi|333014358|gb|EGK33711.1| DNA-binding protein HU-alpha [Shigella flexneri K-304] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|320540340|ref|ZP_08039992.1| putative HU, DNA-binding transcriptional regulator, beta subunit [Serratia symbiotica str. Tucson] gi|320029660|gb|EFW11687.1| putative HU, DNA-binding transcriptional regulator, beta subunit [Serratia symbiotica str. Tucson] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + DS G+ + + F TF V+++ +R G Sbjct: 1 MNKSQLIDKIATGADISKAVAGRALDAVIVSVTDSLKAGDDVALVGFGTFTVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A+ LK + Sbjct: 61 RNPQTGKEITIAAAKVPAFRAAKALKDAVN 90 >gi|317494900|ref|ZP_07953310.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917088|gb|EFV38437.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI V F + LK + Sbjct: 61 RNPQTGMEIKIAAANVPAFVSGKALKDAVK 90 >gi|258405990|ref|YP_003198732.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798217|gb|ACV69154.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 91 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK+++ L+++++ V T F+ I D+ +G+ ++I F +F +K G Sbjct: 1 MNKSELVKALADAHNLTQEEAKDMVNTFFDSIKDALEQGDRVEIRGFGSFKIKHYEGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V + P+R+ F+A LK+ + Sbjct: 61 RNPKTGEVVDVQPKRLPFFRAGKGLKEHLNK 91 >gi|153812530|ref|ZP_01965198.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174] gi|149831455|gb|EDM86543.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174] Length = 91 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++KE LS+KD + + + + +G I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAKETNLSKKDVEAVLKSFTDVVASELKKGGKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI + FKA LK + + Sbjct: 61 RNPQTGETMKIAASKAPKFKAGKALKDMVNE 91 >gi|228912344|ref|ZP_04076038.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228847292|gb|EEM92252.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] Length = 93 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 52/92 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ + + I + E ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAVLTQKDADAATQAVLDTITSALANEEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|163750455|ref|ZP_02157694.1| DNA-binding protein, HU family [Shewanella benthica KT99] gi|161329776|gb|EDQ00764.1| DNA-binding protein, HU family [Shewanella benthica KT99] Length = 91 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + I + G+ I I F +F + +R+G Sbjct: 1 MNKTELVAKMAENADLTKTEAARALKSFEETITAALKSGDKISIIGFGSFETTNRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVNQ 91 >gi|160894582|ref|ZP_02075358.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50] gi|156863893|gb|EDO57324.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAEKTELSKKDAEKALKAFTDVVAEELKKGEKVQLVGFGTFEVAEREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I + FKA LK + Sbjct: 61 RNPRTGETMTIAASKSPKFKAGKALKDSLN 90 >gi|33597659|ref|NP_885302.1| integration host factor beta-subunit [Bordetella parapertussis 12822] gi|81713696|sp|Q7W605|IHFB_BORPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|33574087|emb|CAE38412.1| integration host factor beta-subunit [Bordetella parapertussis] Length = 119 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V + ++V FKA L++R+ D+ G D Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLVGNDQGDDS 101 >gi|294083743|ref|YP_003550500.1| integration host factor subunit alpha [Candidatus Puniceispirillum marinum IMCC1322] gi|292663315|gb|ADE38416.1| integration host factor, alpha subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 97 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 45/93 (48%), Positives = 60/93 (64%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT+TR+DL +++ + GLSR +S+ V + EIC E +K+SSF TF V+ K Sbjct: 1 MSKTLTRADLTEAVYRSVGLSRNESSDLVEAVIEEICSCLESNEEVKLSSFGTFSVQSKT 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T E I PRRV+ FK S ILK R+ Sbjct: 61 ERVGRNPKTGVEAVITPRRVLSFKPSHILKNRV 93 >gi|218780729|ref|YP_002432047.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218762113|gb|ACL04579.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 89 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL++ ++K G ++KD+ V +F I ++ + +A+ + F TF V ++ +R G Sbjct: 1 MNKADLIEEVAKVLG-TKKDAQAAVDCVFATISEALKKDDAVTLVGFGTFKVDKRQARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I R V F LK + Sbjct: 60 RNPRTGEALDIPARNVPKFNPGKALKDAVN 89 >gi|332290335|ref|YP_004421187.1| integration host factor subunit alpha [Gallibacterium anatis UMN179] gi|330433231|gb|AEC18290.1| integration host factor subunit alpha [Gallibacterium anatis UMN179] Length = 98 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 55/95 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F L++ D+ V + F EI + GE +K+S F F ++ K R Sbjct: 2 TLTKVELAENLIEKFNLNKNDAKELVESFFEEIRQALESGEEVKLSGFGNFELRDKTPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V I RRVVVFKA L+ R+ Sbjct: 62 GRNPKTGEYVPITARRVVVFKAGQKLRARVEKSKP 96 >gi|269467813|gb|EEZ79565.1| histone family protein [uncultured SUP05 cluster bacterium] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ D+ R + I + G+ ++I+ F +F V+ + +R G Sbjct: 1 MNKSELIDAIASAANLSKADAGRALNATTGAITSALSGGDGVQITGFGSFVVRARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I + FKA LK+ + Sbjct: 61 RNPQTGATIQIKASKNAAFKAGKALKEAVN 90 >gi|160935949|ref|ZP_02083323.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC BAA-613] gi|158441191|gb|EDP18908.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC BAA-613] Length = 91 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ LS+KD+ + V + + + V+G +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEKAELSKKDAEKAVKAFTDAVSEELVKGGKVQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I+ + FKA LK + Sbjct: 61 RNPKTGKTMTIEASKTPKFKAGKALKDEVNK 91 >gi|304320496|ref|YP_003854139.1| integration host factor beta chain [Parvularcula bermudensis HTCC2503] gi|303299398|gb|ADM08997.1| integration host factor beta chain [Parvularcula bermudensis HTCC2503] Length = 113 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ + L KD + V+ +F+ I + +G+ +++ F TF VK + +R Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD--DMRGRKCNKDDVTSPSGS 113 GRN +T + V+++ + V FKA +++R+ D+ + DV + S Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLNKKTDLVAPMMAQQDVARHAES 112 >gi|330445636|ref|ZP_08309288.1| integration host factor, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489827|dbj|GAA03785.1| integration host factor, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 96 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K + + + ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKDILENMANTLAEGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNASIAA 96 >gi|294634213|ref|ZP_06712759.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] gi|291092358|gb|EFE24919.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|269137541|ref|YP_003294241.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda EIB202] gi|267983201|gb|ACY83030.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda EIB202] gi|304557615|gb|ADM40279.1| DNA-binding protein HU-alpha [Edwardsiella tarda FL6-60] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI V F + LK + Sbjct: 61 RNPQTGNEIKIAAANVPAFVSGKALKDAVK 90 >gi|238756047|ref|ZP_04617370.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473] gi|238705714|gb|EEP98108.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ + LS+ + + + I +S GE +++ F TF V + R G Sbjct: 1 MNKTQLIEVIADKADLSKTQAKAALESTLAAITESLKDGEQVQLVGFGTFKVNHRNERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDSVK 90 >gi|329122306|ref|ZP_08250894.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116] gi|327473867|gb|EGF19284.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116] Length = 90 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ L++K + + + I S GE +++ F TF V ++ +R G Sbjct: 1 MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >gi|90420560|ref|ZP_01228467.1| integration host factor, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335288|gb|EAS49041.1| integration host factor, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 93 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++I+ + L ++D V +F+EI + +++ F F VK + R Sbjct: 1 MIKSELVQAIATRNPHLYQRDVETIVNAIFDEITGALCESNRVELRGFGAFSVKHRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FKA L++R+ D Sbjct: 61 GRNPRTGEAVAVEEKWVPFFKAGKELRERLNAD 93 >gi|310766093|gb|ADP11043.1| DNA-binding protein HU-alpha [Erwinia sp. Ejp617] Length = 90 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V Q+ R+G Sbjct: 1 MNKTQLIDIIADKADLSKTQAKAALDSTLAAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F + LK+ + Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAVK 90 >gi|170720566|ref|YP_001748254.1| integration host factor subunit beta [Pseudomonas putida W619] gi|226709800|sp|B1J5H2|IHFB_PSEPW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|169758569|gb|ACA71885.1| integration host factor, beta subunit [Pseudomonas putida W619] Length = 98 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T Q V+++ + V FK L+ R+ ++ Sbjct: 61 GRNPKTGQSVELEGKFVPHFKPGKELRDRVNEEEH 95 >gi|253701606|ref|YP_003022795.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|251776456|gb|ACT19037.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 91 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E L++ D+ + + + + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLAAGDKVTLVGFGTFSVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT ++++I FK + LK + Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLVN 90 >gi|30468180|ref|NP_849067.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D] gi|19911236|dbj|BAB86889.1| histone-like protein of chloroplast [Cyanidioschyzon merolae] gi|30409280|dbj|BAC76229.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D] Length = 112 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 60/103 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GLS+K + + ++I V G+ +K+ F TF + + +R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN +T + + I R VVVF S LK+++ + M+ +++D Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQASQSQEDA 103 >gi|115522479|ref|YP_779390.1| integration host factor subunit beta [Rhodopseudomonas palustris BisA53] gi|122297854|sp|Q07UH4|IHFB_RHOP5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|115516426|gb|ABJ04410.1| integration host factor, beta subunit [Rhodopseudomonas palustris BisA53] Length = 102 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK +++R+ D Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRD 93 >gi|149204022|ref|ZP_01880990.1| integration host factor subunit beta [Roseovarius sp. TM1035] gi|149142464|gb|EDM30509.1| integration host factor subunit beta [Roseovarius sp. TM1035] Length = 93 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+FNEI D+ G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFNEITDALAEGNRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVHVEEKNVPFFKTGKLLRDRLNG 92 >gi|323136116|ref|ZP_08071199.1| integration host factor, beta subunit [Methylocystis sp. ATCC 49242] gi|322399207|gb|EFY01726.1| integration host factor, beta subunit [Methylocystis sp. ATCC 49242] Length = 96 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++ G L ++D V+T+ +EI + RG+ +++ F F VK++ +R Sbjct: 1 MIKSELIQRIARRNGHLYQRDVETIVSTILDEITAALARGDRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +V + + V FK +++R+ ++ +G Sbjct: 61 GRNPRTGAQVSVQEKSVPFFKTGKEMRERLNENYQG 96 >gi|189424977|ref|YP_001952154.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421236|gb|ACD95634.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 92 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 61/92 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L K + +E G+ +K++ +V L + I ++ +GE +KIS F F V++K +R G Sbjct: 1 MTKIELAKQLHQELGIRQKEAADYVEALLDLIKETLEKGENVKISGFGIFEVREKNARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + + I+PRRV+ FK S+ILK+ I + Sbjct: 61 RNPQTGEAITIEPRRVLTFKPSAILKESINRE 92 >gi|261493979|ref|ZP_05990487.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494737|ref|ZP_05991216.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309554|gb|EEY10778.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310411|gb|EEY11606.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 90 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ L++KD+ + + I S G+A+++ F TF V ++ +R G Sbjct: 1 MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQLIGFGTFKVNERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +V F + LK + Sbjct: 61 RNPKTGEEIKIAAAKVPAFVSGKALKDLVK 90 >gi|89054274|ref|YP_509725.1| integration host factor subunit alpha [Jannaschia sp. CCS1] gi|123094287|sp|Q28RG2|IHFA_JANSC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|88863823|gb|ABD54700.1| integration host factor alpha subunit [Jannaschia sp. CCS1] Length = 100 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 64/97 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ +E GLSR +S+ V + + D+ V GE +K+SSF TF V+ K + Sbjct: 3 GKTLTRMDLSEAVFREVGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T +EV I PRRV+ F+ S ++K R+ R Sbjct: 63 RVGRNPKTGEEVPISPRRVLTFRPSHLMKDRVAAGNR 99 >gi|291542886|emb|CBL15996.1| bacterial nucleoid protein Hbs [Ruminococcus bromii L2-63] Length = 91 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GLS+KD+ + V++ + I ++ GE I+I+ F TF +Q+ +R G Sbjct: 1 MNKTELIAAVAEQSGLSKKDAEKAVSSTIDTIINTVAEGEKIQIAGFGTFEQRQRNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + +T + ++I +V FKA K + Sbjct: 61 CDPRTGKSIEIPASKVPAFKAGKGFKDVVNK 91 >gi|218682312|ref|ZP_03529913.1| integration host factor subunit alpha [Rhizobium etli CIAT 894] Length = 112 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 51/102 (50%), Positives = 73/102 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +E+C++ VRGE +K+SSFATF V+ K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK RI+ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKTRILKAHVSRKVK 104 >gi|319938218|ref|ZP_08012616.1| histone family protein DNA-binding protein [Coprobacillus sp. 29_1] gi|319806739|gb|EFW03388.1| histone family protein DNA-binding protein [Coprobacillus sp. 29_1] Length = 92 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+ I+ GL++ + V + D G+ I + F TF V+ + +R G Sbjct: 1 MNKTELVEKIAATAGLTKTQAEAAVNAFVATVTDGLKDGDKITLKGFGTFEVRAREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + ++I +V FKASS LK + + Sbjct: 61 RNPRTGETMEIAASKVPAFKASSALKNVVNE 91 >gi|190891275|ref|YP_001977817.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CIAT 652] gi|218462450|ref|ZP_03502541.1| bacterial nucleoid DNA-binding protein [Rhizobium etli Kim 5] gi|241204076|ref|YP_002975172.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|190696554|gb|ACE90639.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CIAT 652] gi|240857966|gb|ACS55633.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 91 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F+ + I+++ F +F V + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91 >gi|254438095|ref|ZP_05051589.1| integration host factor, alpha subunit [Octadecabacter antarcticus 307] gi|198253541|gb|EDY77855.1| integration host factor, alpha subunit [Octadecabacter antarcticus 307] Length = 92 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 61/91 (67%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL ++ +E GLSR +S+ V ++ ++ D+ G+++KISSF TF ++ K +R+GRN + Sbjct: 2 DLADAVHEEVGLSRNESSDLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAARIGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 T +EV I PRRV+ F+ S ++K R+ +G Sbjct: 62 TGEEVPITPRRVLSFRPSHLMKDRVAAGNKG 92 >gi|154483310|ref|ZP_02025758.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC 27560] gi|149735820|gb|EDM51706.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC 27560] Length = 112 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +I++E GLS+ D+ + V + + + +GE I++ F TF V ++ R G Sbjct: 23 MNKTEFIAAIAEEAGLSKTDAAKAVKAFTDVVVEEMKKGEKIQLVGFGTFEVSKRPERQG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +++ I V FKA + LK + Sbjct: 83 INPATKEKITIAAANVPKFKAGAGLKNALN 112 >gi|118602049|ref|YP_908749.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|118614789|ref|YP_908572.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|134044455|ref|YP_001101716.1| DNA-binding protein HU [Yersinia ruckeri] gi|134044925|ref|YP_001102091.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str. IP275] gi|134047232|ref|YP_001101901.1| DNA-binding protein HU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165937926|ref|ZP_02226486.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|229516100|ref|ZP_04405550.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|237640210|ref|YP_002891065.1| hypothetical protein peH4H_0022 [Escherichia coli] gi|237809930|ref|YP_002894369.1| hypothetical protein pAR060302_0023 [Escherichia coli] gi|237810119|ref|YP_002894558.1| hypothetical protein pAM04528_0022 [Salmonella enterica] gi|300925740|ref|ZP_07141598.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|118596880|dbj|BAF38184.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|118597058|dbj|BAF38361.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae subsp. piscicida] gi|133904818|gb|ABO40835.1| DNA-binding protein HU [Yersinia ruckeri] gi|133905151|gb|ABO41166.1| DNA-binding protein HU [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905459|gb|ABO42221.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str. IP275] gi|165913949|gb|EDR32566.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis str. IP275] gi|229346880|gb|EEO11848.1| DNA-binding protein HU-beta [Vibrio cholerae RC9] gi|229561429|gb|ACQ77632.1| conserved hypothetical protein [Escherichia coli] gi|229561603|gb|ACQ77805.1| conserved hypothetical protein [Salmonella enterica] gi|229561785|gb|ACQ77986.1| conserved hypothetical protein [Escherichia coli] gi|300418162|gb|EFK01473.1| DNA-binding protein HU [Escherichia coli MS 182-1] gi|324007578|gb|EGB76797.1| DNA-binding protein HU [Escherichia coli MS 57-2] gi|327536459|gb|AEA95292.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica serovar Dublin] gi|332144534|dbj|BAK19754.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 90 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TFHVK++ +R G Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFHVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSVN 90 >gi|283851059|ref|ZP_06368343.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|283573455|gb|EFC21431.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] Length = 90 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+++ GL++ ++ R + I + V + ++ F TF V ++ +R G Sbjct: 1 MTKADLVGKIAEKTGLTKANAERALNAFIEAIEATLVGEGKLTLTGFGTFMVDERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+ I +VV F+ +LK I Sbjct: 61 RNPRTGTEINIPASKVVKFRPGKLLKDAIQ 90 >gi|16762287|ref|NP_457904.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767424|ref|NP_463039.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143775|ref|NP_807117.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415996|ref|YP_153071.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182621|ref|YP_219038.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157147203|ref|YP_001454522.1| transcriptional regulator HU subunit alpha [Citrobacter koseri ATCC BAA-895] gi|161505342|ref|YP_001572454.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161617309|ref|YP_001591274.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553826|ref|ZP_02347570.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234408|ref|ZP_02659466.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239596|ref|ZP_02664654.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245126|ref|ZP_02670058.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264574|ref|ZP_02686547.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467898|ref|ZP_02701735.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823116|ref|ZP_02835116.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445718|ref|YP_002043418.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450276|ref|YP_002048155.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472167|ref|ZP_03078151.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737577|ref|YP_002117071.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249995|ref|YP_002149078.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265623|ref|ZP_03165697.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364923|ref|YP_002144560.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243874|ref|YP_002218086.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387831|ref|ZP_03214443.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931262|ref|ZP_03222022.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354428|ref|YP_002228229.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859348|ref|YP_002245999.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051532|ref|ZP_03344410.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420368|ref|ZP_03353434.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428479|ref|ZP_03361229.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586806|ref|ZP_03368632.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609700|ref|ZP_03369526.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647192|ref|ZP_03377245.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855082|ref|ZP_03383322.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585710|ref|YP_002639509.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|237727864|ref|ZP_04558345.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2] gi|238913748|ref|ZP_04657585.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283787327|ref|YP_003367192.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168] gi|283836739|ref|ZP_06356480.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] gi|289804949|ref|ZP_06535578.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826727|ref|ZP_06545692.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392169|sp|P0A1R6|DBHA_SALTY RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|60392170|sp|P0A1R7|DBHA_SALTI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2; AltName: Full=NS2 gi|25294362|pir||AH0931 histone like DNA-binding protein HU-alpha (NS2) (HU-2) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|154139|gb|AAA27147.1| histone-like protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960343|gb|AAF33503.1| Salmonella typhimurium DNA-binding protein HU-2 (HUPA) (SW:P15148); contains similarity to Pfam domain PF00216 (BAC_DBA_binding), Score=182.9, E=1.7e-51, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422729|gb|AAL22998.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504591|emb|CAD09474.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Typhi] gi|29139410|gb|AAO70977.1| histone like DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130253|gb|AAV79759.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130254|gb|AAX67957.1| DNA-binding protein HU-alpha (HU-2) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157084408|gb|ABV14086.1| hypothetical protein CKO_02986 [Citrobacter koseri ATCC BAA-895] gi|160866689|gb|ABX23312.1| hypothetical protein SARI_03487 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366673|gb|ABX70441.1| hypothetical protein SPAB_05160 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404381|gb|ACF64603.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408580|gb|ACF68799.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458531|gb|EDX47370.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713079|gb|ACF92300.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629006|gb|EDX48398.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096400|emb|CAR62005.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213698|gb|ACH51095.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243878|gb|EDY26498.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287722|gb|EDY27113.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938390|gb|ACH75723.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604929|gb|EDZ03474.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204319877|gb|EDZ05084.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274209|emb|CAR39227.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321830|gb|EDZ09669.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331654|gb|EDZ18418.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336108|gb|EDZ22872.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340578|gb|EDZ27342.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346968|gb|EDZ33599.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711151|emb|CAR35525.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470238|gb|ACN48068.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226910421|gb|EEH96339.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2] gi|261249274|emb|CBG27136.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996471|gb|ACY91356.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|282950781|emb|CBG90457.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168] gi|291067290|gb|EFE05399.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220] gi|301160666|emb|CBW20197.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915276|dbj|BAJ39250.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223370|gb|EFX48437.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616279|gb|EFY13189.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617278|gb|EFY14180.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625950|gb|EFY22765.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626652|gb|EFY23454.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631487|gb|EFY28244.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635200|gb|EFY31918.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642595|gb|EFY39191.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646806|gb|EFY43310.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650804|gb|EFY47197.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655896|gb|EFY52197.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657295|gb|EFY53574.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665557|gb|EFY61742.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669740|gb|EFY65885.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670981|gb|EFY67113.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679195|gb|EFY75248.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679353|gb|EFY75400.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688120|gb|EFY84084.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322717118|gb|EFZ08689.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132506|gb|ADX19936.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193388|gb|EFZ78598.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200692|gb|EFZ85765.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202181|gb|EFZ87237.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209292|gb|EFZ94227.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211617|gb|EFZ96454.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218045|gb|EGA02758.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221334|gb|EGA05756.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225739|gb|EGA09960.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230973|gb|EGA15090.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235755|gb|EGA19837.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240069|gb|EGA24115.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242598|gb|EGA26620.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249694|gb|EGA33601.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252577|gb|EGA36418.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256929|gb|EGA40641.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262048|gb|EGA45612.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323263946|gb|EGA47460.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268441|gb|EGA51911.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625879|gb|EGE32224.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629560|gb|EGE35903.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990989|gb|AEF09972.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 90 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|110635997|ref|YP_676205.1| integration host factor, beta subunit [Mesorhizobium sp. BNC1] gi|123161580|sp|Q11C35|IHFB_MESSB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|110286981|gb|ABG65040.1| integration host factor, beta subunit [Chelativorans sp. BNC1] Length = 94 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++I+ + L +D V +F+EI ++ +G +++ F F VK + +R Sbjct: 1 MIKSELVQTIANRNPHLFLRDVENIVNAIFDEITEALAQGNRVELRGFGAFSVKNRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK L++R+ D Sbjct: 61 GRNPRTGESVHVEEKWVPFFKTGKELRERLNAD 93 >gi|145589020|ref|YP_001155617.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047426|gb|ABP34053.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 107 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 33/100 (33%), Positives = 56/100 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+T+++L +++ + GL+++++ + F+ I S G +KIS F F ++ K + Sbjct: 7 SDTVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGQSLEAGTEVKISGFGNFQLRNKSA 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R GRN +T Q + I RRVV F AS LK + R + Sbjct: 67 RPGRNPKTGQMIPIAARRVVTFHASQKLKDVVESHARENR 106 >gi|330994019|ref|ZP_08317949.1| Integration host factor subunit alpha [Gluconacetobacter sp. SXCC-1] gi|329758965|gb|EGG75479.1| Integration host factor subunit alpha [Gluconacetobacter sp. SXCC-1] Length = 109 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+TR+ L + I + GLSR +S + + + + G+ +KIS F TF V+QKG Sbjct: 3 MS-TVTRATLAEQIYDQVGLSRHESADILEDILERMVRTLETGDTLKISGFGTFSVRQKG 61 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R GRN +T EV I PR V+VF+ S +L+ + G + D Sbjct: 62 QRTGRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGQAGGENLPEGD 107 >gi|119356085|ref|YP_910729.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] gi|119353434|gb|ABL64305.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 91 Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V N + +S GE + + F TF ++ R G Sbjct: 1 MSKAELVEKIASQAGLTKVDAERAVNAFMNVVTESLKEGEDVTLVGFGTFTTGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN Q + + I ++VV FK LK + Sbjct: 61 RNPQNGETITIAAKKVVKFKPGKALKAGVEG 91 >gi|319898049|ref|YP_004136246.1| DNA-binding protein hu [Haemophilus influenzae F3031] gi|317433555|emb|CBY81939.1| DNA-binding protein HU [Haemophilus influenzae F3031] Length = 90 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ L++K + + + I S +GE +++ F TF V ++ +R G Sbjct: 1 MNKTNLIDAIANAAELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V F + LK I Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >gi|301629532|ref|XP_002943892.1| PREDICTED: integration host factor subunit beta-like [Xenopus (Silurana) tropicalis] Length = 99 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV++++ F L+ +D+ V + + + D+ VRG+ I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEALATRFRQLTHRDAEHAVRAILDAVGDALVRGQRIEIRGFGSFSITRRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V+I +RV FK L++ + Sbjct: 61 GRNPRSGEAVQIPEKRVPHFKPGKALRESV 90 >gi|227485001|ref|ZP_03915317.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172] gi|227236998|gb|EEI87013.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172] Length = 92 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SIS++ GL + +S + + + ++ V+G+ +++ F TF V+ + +R G Sbjct: 1 MNKSELLNSISEKSGLKKVESEKALNAFLETVQEALVKGDKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92 >gi|229591359|ref|YP_002873478.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25] gi|312961786|ref|ZP_07776284.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens WH6] gi|213521162|gb|ACJ50519.1| DNA-binding protein HU-beta [Pseudomonas fluorescens] gi|229363225|emb|CAY50308.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25] gi|256556955|gb|ACU83577.1| DNA-binding protein HU-beta [uncultured bacterium HF130_AEPn_2] gi|311284045|gb|EFQ62628.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens WH6] Length = 90 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +R G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK+ + Sbjct: 61 RNPQTGKALQIAAAKKPGFKAGKALKEAVN 90 >gi|86141624|ref|ZP_01060170.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella blandensis MED217] gi|85832183|gb|EAQ50638.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella blandensis MED217] Length = 90 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++++ G+++ + + + + I S G+ + + F ++ V ++ +R G Sbjct: 1 MNKSDLIDAMAEDAGITKAAAKKALESFLGNIEKSLKGGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + VV FKA S L + Sbjct: 61 RNPQTGKTIQIAAKNVVKFKAGSDLSDAVN 90 >gi|91977158|ref|YP_569817.1| integration host factor subunit alpha [Rhodopseudomonas palustris BisB5] gi|123735393|sp|Q136S3|IHFA_RHOPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|91683614|gb|ABE39916.1| integration host factor, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 123 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 47/95 (49%), Positives = 68/95 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V+QKG Sbjct: 5 GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T EV I PRRV+VFK S+ILK+RI + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99 >gi|86749768|ref|YP_486264.1| integration host factor subunit alpha [Rhodopseudomonas palustris HaA2] gi|123004139|sp|Q2IWQ7|IHFA_RHOP2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|86572796|gb|ABD07353.1| integration host factor, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 123 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 47/95 (49%), Positives = 68/95 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR DL +++ ++ GLSR +S+ FV + EI D +GE +K+SSF +F V+QKG Sbjct: 5 GRTVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQ 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T EV I PRRV+VFK S+ILK+RI + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99 >gi|241758757|ref|ZP_04756870.1| DNA-binding protein HU-beta [Neisseria flavescens SK114] gi|261380122|ref|ZP_05984695.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703] gi|319638329|ref|ZP_07993092.1| DNA-binding protein HU-beta [Neisseria mucosa C102] gi|241320965|gb|EER57178.1| DNA-binding protein HU-beta [Neisseria flavescens SK114] gi|284796958|gb|EFC52305.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703] gi|317400602|gb|EFV81260.1| DNA-binding protein HU-beta [Neisseria mucosa C102] Length = 89 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89 >gi|27366256|ref|NP_761784.1| integration host factor subunit beta [Vibrio vulnificus CMCP6] gi|320156765|ref|YP_004189144.1| integration host factor subunit beta [Vibrio vulnificus MO6-24/O] gi|33301285|sp|Q8D8J3|IHFB_VIBVU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|27362457|gb|AAO11311.1| integration host factor, beta subunit [Vibrio vulnificus CMCP6] gi|319932077|gb|ADV86941.1| integration host factor beta subunit [Vibrio vulnificus MO6-24/O] Length = 93 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|229014688|ref|ZP_04171798.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] gi|228746594|gb|EEL96487.1| DNA-binding protein HU [Bacillus mycoides DSM 2048] Length = 93 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 53/92 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++K++ + N I ++ + ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKMVAEKAELTQKEAAAATQAVLNAITNALANEDKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|49474142|ref|YP_032184.1| DNA-binding protein [Bartonella quintana str. Toulouse] gi|49239646|emb|CAF26006.1| DNA-binding protein [Bartonella quintana str. Toulouse] Length = 92 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV S++++ G+S+ + + + ++ G +++ F +F + + + G Sbjct: 1 MNKSELVSSVAEKAGVSKAQAGSVIDAFIASVTEALASGGDVRLPGFGSFEISHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + Sbjct: 61 RNPSTGVEINIPARSVPKFSAGKTLKEAVNK 91 >gi|255065928|ref|ZP_05317783.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256] gi|261364607|ref|ZP_05977490.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996] gi|261378756|ref|ZP_05983329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685] gi|255049839|gb|EET45303.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256] gi|269144911|gb|EEZ71329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685] gi|288567196|gb|EFC88756.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996] Length = 89 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKAAAQKALDATTNAVTNALKKGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89 >gi|220934716|ref|YP_002513615.1| integration host factor, beta subunit [Thioalkalivibrio sp. HL-EbGR7] gi|254803541|sp|B8GRS4|IHFB_THISH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|219996026|gb|ACL72628.1| integration host factor, beta subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 96 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++++ L+ KD V T+ + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVN 91 >gi|163793229|ref|ZP_02187205.1| Integration host factor, alpha subunit [alpha proteobacterium BAL199] gi|159181875|gb|EDP66387.1| Integration host factor, alpha subunit [alpha proteobacterium BAL199] Length = 106 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 64/93 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+TR+ L +S+ +E GLSR +S V ++ +E+ + RGE +KISSF +F V+QKG Sbjct: 7 GHTVTRAQLSESVYEEVGLSRNESAELVESVLDEMIAALARGEMVKISSFGSFSVRQKGR 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RVGRN +T EV I PR+V+VF+ S +LK +I Sbjct: 67 RVGRNPKTGDEVPILPRKVLVFRPSHVLKNQIN 99 >gi|77460281|ref|YP_349788.1| integration host factor subunit beta [Pseudomonas fluorescens Pf0-1] gi|123603757|sp|Q3K8V7|IHFB_PSEPF RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|77384284|gb|ABA75797.1| integration host factor beta-subunit [Pseudomonas fluorescens Pf0-1] Length = 98 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T Q V +D + V FK L+ R+ ++ G Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEGE 97 >gi|259046865|ref|ZP_05737266.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175] gi|259036488|gb|EEW37743.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175] Length = 92 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++K+ L++KD + V LF I ++ GE +++ F F V+++ +R GR Sbjct: 3 NKAELVDRVAKKTQLTKKDVSATVEALFETIQEALKAGEKVQVIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIKASKVPAFKAGKALKDAVKK 92 >gi|150014983|ref|YP_001307237.1| histone family protein DNA-binding protein [Clostridium beijerinckii NCIMB 8052] gi|118264|sp|P05385|DBH_CLOPA RecName: Full=DNA-binding protein HU gi|149901448|gb|ABR32281.1| histone family protein DNA-binding protein [Clostridium beijerinckii NCIMB 8052] gi|224155|prf||1011218A protein II,DNA binding Length = 91 Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + L + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I V VFKA K ++ Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91 >gi|26988504|ref|NP_743929.1| integration host factor subunit beta [Pseudomonas putida KT2440] gi|60392452|sp|P0A128|IHFB_PSEPK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|60392453|sp|P0A129|IHFB_PSEPU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|24983270|gb|AAN67393.1|AE016366_1 integration host factor, beta subunit [Pseudomonas putida KT2440] gi|1435201|gb|AAB04061.1| IhfB [Pseudomonas putida] gi|313500060|gb|ADR61426.1| IhfB [Pseudomonas putida BIRD-1] Length = 100 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T Q V ++ + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEDEH 95 >gi|322436183|ref|YP_004218395.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321163910|gb|ADW69615.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 108 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++ L+R+D V LF+ + + G+ I+I F +F +Q+ SR+G Sbjct: 1 MTKADLVDKVTSLGDLTRRDGEVIVDLLFDSVIGALKSGDKIEIRGFGSFRTRQRNSRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +V + ++V FK S L+ + Sbjct: 61 RNPKTGAKVDVPAKKVPFFKPSKELRDLVN 90 >gi|169350831|ref|ZP_02867769.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM 1552] gi|169292417|gb|EDS74550.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM 1552] Length = 91 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+ +++ D + +T+ + D+ V+GE + + F F ++++G R G Sbjct: 1 MNKTELVEAIASNTNMTKTDVDKVITSFIEVVTDALVKGEKVSLKGFGNFEIRERGERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + FKASS LK + Sbjct: 61 RNPRTGETMTISASKAPAFKASSALKNAVNK 91 >gi|326317193|ref|YP_004234865.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374029|gb|ADX46298.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 121 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 54/95 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + + GL++++S + F+ I V G+ +KIS F F ++ K Sbjct: 22 TPALTKAQLAELLFDQIGLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAP 81 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T + + I RRVV F AS+ LK++I Sbjct: 82 RPGRNPRTGEAIPIQARRVVTFHASTKLKEQIQGG 116 >gi|254435518|ref|ZP_05049025.1| integration host factor, beta subunit [Nitrosococcus oceani AFC27] gi|207088629|gb|EDZ65901.1| integration host factor, beta subunit [Nitrosococcus oceani AFC27] Length = 96 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS +D V L + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 61 GRNPKTGDAVPLSSKYVPHFKPGKELRERV 90 >gi|85058119|ref|YP_453821.1| transcriptional regulator HU subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|84778639|dbj|BAE73416.1| DNA-binding protein HU-alpha (HU-2) [Sodalis glossinidius str. 'morsitans'] Length = 90 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF + + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKSALESTLAAITESLKEGDAVQLVGFGTFKINHRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V VF + LK + Sbjct: 61 RNPQTGKEIKIAAANVPVFVSGKALKDAVK 90 >gi|320539744|ref|ZP_08039407.1| putative HU, DNA-binding transcriptional regulator, alpha subunit [Serratia symbiotica str. Tucson] gi|320030209|gb|EFW12225.1| putative HU, DNA-binding transcriptional regulator, alpha subunit [Serratia symbiotica str. Tucson] Length = 90 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKADLSKAQAKLALESTLVAITESLKEGDAVQLVGFGTFKVNHRSERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|83952159|ref|ZP_00960891.1| integration host factor, alpha subunit [Roseovarius nubinhibens ISM] gi|83837165|gb|EAP76462.1| integration host factor, alpha subunit [Roseovarius nubinhibens ISM] Length = 92 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 64/90 (71%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL ++I +E GLSR DS + V ++ + + D+ VRGE +KISSF TF V+QK +R+GRN + Sbjct: 2 DLSEAIFREVGLSRNDSAQLVESVLDHMSDALVRGEQVKISSFGTFSVRQKSARMGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T EV IDPRRV+ F+ S ++K+R+ + Sbjct: 62 TGTEVPIDPRRVLTFRPSHLMKERVAAGNK 91 >gi|296282450|ref|ZP_06860448.1| integration host factor subunit alpha [Citromicrobium bathyomarinum JL354] Length = 100 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%) Query: 1 MSK---TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 MS+ T+TR+DL ++I+++ G SR +S V ++ +CDS GE +KIS F +F ++ Sbjct: 1 MSRSAGTLTRADLAETINRKLGFSRAESLALVESILAHMCDSLKDGENVKISGFGSFVLR 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 K RVGRN +T EV I PRRV+ F+AS L+ RI D Sbjct: 61 DKKERVGRNPKTGVEVPITPRRVMTFRASQTLRDRIADG 99 >gi|256822124|ref|YP_003146087.1| integration host factor subunit beta [Kangiella koreensis DSM 16069] gi|256795663|gb|ACV26319.1| integration host factor, beta subunit [Kangiella koreensis DSM 16069] Length = 100 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ + + LS +D V ++ +++ +S G+ I+I F +F + + RV Sbjct: 1 MTKSQLIERLVDKNPQLSVRDVELVVKSMIDQMSESLSDGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + VK+D + V FK L++R+ D Sbjct: 61 GRNPKTGESVKLDGKYVPHFKPGKELRERVNDG 93 >gi|228472724|ref|ZP_04057482.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] gi|228275775|gb|EEK14541.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] Length = 90 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++E GLS+ D+ + + + + +G+ I + F ++ V +K +R G Sbjct: 1 MNKTELIDAIAQEAGLSKADAKKALEAFLATVEKTLKKGDKISLVGFGSWSVTEKAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI ++VV FKA + L + Sbjct: 61 RNPQTGKTIKIPAKKVVKFKAGTELSNAVN 90 >gi|304392325|ref|ZP_07374266.1| integration host factor, beta subunit [Ahrensia sp. R2A130] gi|303295429|gb|EFL89788.1| integration host factor, beta subunit [Ahrensia sp. R2A130] Length = 93 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S LV++IS L ++D V + +EI ++ RG+ +++ F F VK + RV Sbjct: 1 MIKSSLVQTISDNNPHLYQRDVENIVNAILDEITEALARGDRVELRGFGAFSVKNRNPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V+++ + V FK L+ R+ D Sbjct: 61 GRNPRTGERVEVEEKWVPFFKTGKDLRDRLNAD 93 >gi|284043331|ref|YP_003393671.1| histone family protein DNA-binding protein [Conexibacter woesei DSM 14684] gi|283947552|gb|ADB50296.1| histone family protein DNA-binding protein [Conexibacter woesei DSM 14684] Length = 91 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+ V ++ GLS+KD+ V + I ++ RG + S F FHV ++G+R G Sbjct: 1 MTKSEFVDQVAANSGLSKKDAGDAVDAVLQTIEEALKRGSEVTFSGFGKFHVAERGAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T ++++I RV F S LK+ + Sbjct: 61 RNPSTGEKIQIAASRVPRFTPGSGLKRAVK 90 >gi|254481925|ref|ZP_05095168.1| integration host factor, beta subunit [marine gamma proteobacterium HTCC2148] gi|214038054|gb|EEB78718.1| integration host factor, beta subunit [marine gamma proteobacterium HTCC2148] Length = 98 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I+ ++ LS KD V T+ + S GE I+I F +F + + R Sbjct: 1 MTKSELIETIAARQSQLSSKDVELAVKTILEHMSHSLADGERIEIRGFGSFSLHYREPRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V++ + V FK L++R+ Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRERVN 91 >gi|28870878|ref|NP_793497.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str. DC3000] gi|66044995|ref|YP_234836.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|71736986|ref|YP_273938.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|77459916|ref|YP_349423.1| nucleoid protein HU beta subunit [Pseudomonas fluorescens Pf0-1] gi|213968837|ref|ZP_03396978.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. tomato T1] gi|257483812|ref|ZP_05637853.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627507|ref|ZP_06460461.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649942|ref|ZP_06481285.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aesculi str. 2250] gi|289679418|ref|ZP_06500308.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. syringae FF5] gi|298486266|ref|ZP_07004329.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301384117|ref|ZP_07232535.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato Max13] gi|302059520|ref|ZP_07251061.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato K40] gi|302135029|ref|ZP_07261019.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187981|ref|ZP_07264654.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. syringae 642] gi|330808575|ref|YP_004353037.1| DNA-binding protein, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|22532107|gb|AAM97839.1|AF447727_1 DNA binding protein HU-beta [Pseudomonas syringae] gi|28854127|gb|AAO57192.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str. DC3000] gi|63255702|gb|AAY36798.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|71557539|gb|AAZ36750.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|77383919|gb|ABA75432.1| DNA-binding protein HU-beta [Pseudomonas fluorescens Pf0-1] gi|213926440|gb|EEB59994.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv. tomato T1] gi|298159273|gb|EFI00331.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325364|gb|EFW81431.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. glycinea str. B076] gi|320327651|gb|EFW83659.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. glycinea str. race 4] gi|327376683|gb|AEA68033.1| Putative DNA-binding protein, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|330868372|gb|EGH03081.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330878775|gb|EGH12924.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330882121|gb|EGH16270.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. glycinea str. race 4] gi|330889994|gb|EGH22655.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. mori str. 301020] gi|330939709|gb|EGH43004.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. pisi str. 1704B] gi|330959390|gb|EGH59650.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. maculicola str. ES4326] gi|330963317|gb|EGH63577.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. actinidiae str. M302091] gi|330972585|gb|EGH72651.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975099|gb|EGH75165.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985642|gb|EGH83745.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012682|gb|EGH92738.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331019232|gb|EGH99288.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 90 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +R+G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK+ + Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >gi|328948102|ref|YP_004365439.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] gi|328448426|gb|AEB14142.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] Length = 92 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K GL +KD+ + + + +G +++ F TF V ++ +R G Sbjct: 1 MNKAELIEKMAKSTGLPKKDAESALKSFLEIVSKELEKGHDVQLIGFGTFTVGKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + +KI + FK LK R+ Sbjct: 61 RNPATGETIKIAASKTPKFKPGKALKDRLNK 91 >gi|148381474|ref|YP_001256015.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502] gi|153931858|ref|YP_001385849.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397] gi|153937038|ref|YP_001389256.1| DNA-binding protein HU [Clostridium botulinum A str. Hall] gi|153939802|ref|YP_001392888.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland] gi|168181003|ref|ZP_02615667.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916] gi|170755876|ref|YP_001783174.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra] gi|170761658|ref|YP_001788874.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree] gi|226950990|ref|YP_002806081.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto] gi|148290958|emb|CAL85094.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502] gi|152927902|gb|ABS33402.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397] gi|152932952|gb|ABS38451.1| DNA-binding protein HU [Clostridium botulinum A str. Hall] gi|152935698|gb|ABS41196.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland] gi|169121088|gb|ACA44924.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra] gi|169408647|gb|ACA57058.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree] gi|182668057|gb|EDT80036.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916] gi|226841522|gb|ACO84188.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto] gi|295320865|gb|ADG01243.1| DNA-binding protein HU [Clostridium botulinum F str. 230613] gi|322807859|emb|CBZ05434.1| DNA-binding protein HBsu [Clostridium botulinum H04402 065] Length = 92 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD+ + + ++ GE +++ F TF +++ RVG Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I VFKA LK+++ Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVNK 91 >gi|88798959|ref|ZP_01114540.1| integration host factor beta subunit [Reinekea sp. MED297] gi|88778186|gb|EAR09380.1| integration host factor beta subunit [Reinekea sp. MED297] Length = 101 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS +D + T+ + + + GE I+I F +F + + RV Sbjct: 6 VTKSELIERIVDRQGQLSVRDVELAIKTMLDHMAQALAEGERIEIRGFGSFSLHYRSPRV 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V+++ + V FK L++ + + + Sbjct: 66 GRNPKTGESVELEGKYVPHFKPGKELRESVNESL 99 >gi|121730318|ref|ZP_01682684.1| integration host factor, alpha subunit [Vibrio cholerae V52] gi|121627928|gb|EAX60500.1| integration host factor, alpha subunit [Vibrio cholerae V52] Length = 85 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 50/84 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L +++ ++ G+S++D+ V F EI + GE +K+S F F ++ K R Sbjct: 2 ALTKAELAEALFEQLGMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASS 87 GRN +T +++ I RRVV F+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQ 85 >gi|73542253|ref|YP_296773.1| integration host factor subunit beta [Ralstonia eutropha JMP134] gi|123760154|sp|Q46Y54|IHFB_RALEJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|72119666|gb|AAZ61929.1| Integration host factor, beta subunit [Ralstonia eutropha JMP134] Length = 137 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM---RGRKCNKDDVTSPSG 112 GRN ++ + V + +RV FKA L++R+ ++ G N +PSG Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRNLTPSSGGSGNGHLTGTPSG 112 >gi|294666559|ref|ZP_06731800.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603703|gb|EFF47113.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 122 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ +S+ ++ R V + +EI + +G+A+ + F TF V+++ R G Sbjct: 33 MNKTELIDGVAAAADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERTG 92 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI + FKA K + Sbjct: 93 RNPKTGDSIKIAASKNPAFKAGKAPKDAV 121 >gi|163759219|ref|ZP_02166305.1| integration host factor alpha subunit [Hoeflea phototrophica DFL-43] gi|162283623|gb|EDQ33908.1| integration host factor alpha subunit [Hoeflea phototrophica DFL-43] Length = 107 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 72/102 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KTITR+DL +++ ++ GLSR +S V + E+ +S VRGE++K+SSFATF V++K Sbjct: 3 GKTITRADLAEAVFRKVGLSRTESAELVEMVLEEVSNSIVRGESVKLSSFATFQVREKKE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T +EV I PRRV+ FKAS++LK R++ RK Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKNRVLKGHLARKGK 104 >gi|53805111|ref|YP_113209.1| integration host factor subunit alpha [Methylococcus capsulatus str. Bath] gi|81682701|sp|Q60AY8|IHFA_METCA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|53758872|gb|AAU93163.1| integration host factor, alpha subunit [Methylococcus capsulatus str. Bath] Length = 110 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V+ + E GL+++D+ V F I S G ++K+S F F ++ K R Sbjct: 2 ALTKADMVERLFSELGLNKRDAKELVDQFFEVIKASLESGRSVKLSGFGNFDLRDKRQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN +T +E+ I RRVV FKA LK + + ++ + K D Sbjct: 62 GRNPKTGEEIPITARRVVTFKAGQKLKATV-EALQEPELGKLDA 104 >gi|30250139|ref|NP_842209.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] gi|30139246|emb|CAD86119.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] Length = 90 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ I++ L++ + + + I D+ + +++ + F TF V ++ +R G Sbjct: 1 MNKSDLIDVIAQSADLTKAQAGNALDGALSAIKDALGKNDSVTLVGFGTFKVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+KI +V F A LK + Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >gi|119476516|ref|ZP_01616867.1| integration host factor alpha subunit [marine gamma proteobacterium HTCC2143] gi|119450380|gb|EAW31615.1| integration host factor alpha subunit [marine gamma proteobacterium HTCC2143] Length = 102 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 51/91 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S + + + +E GL+++++ V F EI S E +K+S F F ++ K R Sbjct: 3 ALTKSVMAEKLYEELGLNKREAKEVVEHFFEEIRYSLEDNEQVKLSGFGNFDLRDKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKVRVE 93 >gi|121610039|ref|YP_997846.1| integration host factor subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121554679|gb|ABM58828.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 108 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 58/98 (59%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + + GL++++S + +F+ I S V G+ +K+S F F ++ K Sbjct: 11 TPALTKAQLAELLFDQIGLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAP 70 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R GRN +T + + I RRVV+F ASS LK++I G Sbjct: 71 RPGRNPRTGEAIPIQARRVVIFHASSKLKEQIQTAAIG 108 >gi|15839028|ref|NP_299716.1| integration host factor subunit beta [Xylella fastidiosa 9a5c] gi|9107628|gb|AAF85236.1|AE004052_11 integration host factor, beta subunit [Xylella fastidiosa 9a5c] Length = 126 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++K L D V +L + + G+ I+I F +F + + R Sbjct: 23 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 82 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + V + + V FK L++R+ + +C Sbjct: 83 GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLAECGD 123 >gi|254470707|ref|ZP_05084110.1| integration host factor, beta subunit [Pseudovibrio sp. JE062] gi|211959849|gb|EEA95046.1| integration host factor, beta subunit [Pseudovibrio sp. JE062] Length = 99 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++I++ L ++D V + +E+ ++ +RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQTIAERNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T Q+V++ + V FK +++R+ D Sbjct: 61 GRNPRTGQKVEVGEKFVPFFKTGKEMRERLNDGT 94 >gi|146337267|ref|YP_001202315.1| integration host factor subunit beta [Bradyrhizobium sp. ORS278] gi|166918541|sp|A4YJI9|IHFB_BRASO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|146190073|emb|CAL74065.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium sp. ORS278] Length = 105 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNP 95 >gi|197117663|ref|YP_002138090.1| histone-like protein [Geobacter bemidjiensis Bem] gi|197087023|gb|ACH38294.1| histone-like protein [Geobacter bemidjiensis Bem] Length = 91 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I++E L++ D+ + + + + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEEAQLTKVDAEKSLMGILDALTNCLATGDKVTLVGFGTFSVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT ++++I FK + LK + Sbjct: 61 QNPQTGKKIEIAASSAPKFKPGNTLKDLVN 90 >gi|40288405|gb|AAR84227.1| integration host factor alpha subunit [Pantoea stewartii subsp. stewartii DC283] Length = 99 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+C + GE +K+S F + K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVELFFEEVCRALENGEQVKLSGFGNSDLCDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +++ I RRVV F+ LK R+ + Sbjct: 62 GRNPETGEDIPITARRVVTFRPGQKLKSRVENA 94 >gi|95930290|ref|ZP_01313028.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95133753|gb|EAT15414.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 93 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 60/92 (65%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+++ + G S+K+S V T+F + D+ G+ IKI+ F F VKQK +R G Sbjct: 1 MTKADLVENVYFKTGFSKKESAEIVETVFELMKDTLEDGDKIKIAGFGNFVVKQKATRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT +E++I R+++ FK S +LK I + Sbjct: 61 RNPQTGEEIEISSRKILTFKPSQVLKTAINEG 92 >gi|54309614|ref|YP_130634.1| putative integration host factor, beta subunit [Photobacterium profundum SS9] gi|81697345|sp|Q6LPE4|IHFB_PHOPR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|46914052|emb|CAG20832.1| putative integration host factor, beta subunit [Photobacterium profundum SS9] Length = 96 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K + + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMAGTLAEGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T +V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNAAIAA 96 >gi|163734570|ref|ZP_02142009.1| integration host factor subunit beta [Roseobacter litoralis Och 149] gi|161392063|gb|EDQ16393.1| integration host factor subunit beta [Roseobacter litoralis Och 149] Length = 94 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ D+ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTDAMARGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92 >gi|312796427|ref|YP_004029349.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] gi|312168202|emb|CBW75205.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] Length = 90 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + L + + ++ +G ++ + F TF + + +R G Sbjct: 1 MNKTELIDHIAEQADISKAAAGRALDALIDGVKETLKKGGSVTLVGFGTFALGTRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI+ +V F+A LK + Sbjct: 61 RNPRTGAAIKIEAAKVPKFRAGKALKDALN 90 >gi|268590154|ref|ZP_06124375.1| integration host factor, beta subunit [Providencia rettgeri DSM 1131] gi|291314429|gb|EFE54882.1| integration host factor, beta subunit [Providencia rettgeri DSM 1131] Length = 95 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K V + + D+ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLANGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|325279829|ref|YP_004252371.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324311638|gb|ADY32191.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 89 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 52/88 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +I+++ GL++ DS + + + ++ G+ + + F +F V ++ +R G Sbjct: 1 MNKAQLIDAIAEKAGLTKADSKKALEAFVETVGEALKGGDKVALIGFGSFSVSERSARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + + I ++VV FKA + L ++ Sbjct: 61 RNPQTGKTITIPAKKVVKFKAGAELAEK 88 >gi|296313665|ref|ZP_06863606.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] gi|296839808|gb|EFH23746.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] Length = 89 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKVAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89 >gi|296136321|ref|YP_003643563.1| histone family protein DNA-binding protein [Thiomonas intermedia K12] gi|294340557|emb|CAZ88942.1| Integration host factor subunit beta (IHF-beta) [Thiomonas sp. 3As] gi|295796443|gb|ADG31233.1| histone family protein DNA-binding protein [Thiomonas intermedia K12] Length = 110 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ +F L+ +D+ V T+ + + + G ++I F +F V + +R+ Sbjct: 1 MTRSDLVEILAAQFPQLTHRDAELSVKTILDALAQALDDGHRVEIRGFGSFSVSHRSARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 GRN ++ ++V + +R+ FK L++ + D + + D P Sbjct: 61 GRNPRSGEQVAVPEKRIPHFKPGKTLRELV--DYQAEERKVDGRNQPEN 107 >gi|241663131|ref|YP_002981491.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|240865158|gb|ACS62819.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] Length = 90 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V ++ SR G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I+ +V FK LK + Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALKDALN 90 >gi|303242803|ref|ZP_07329270.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] gi|302589653|gb|EFL59434.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] Length = 92 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV SI+ + GL++K+S + L + + ++ +G+ + + F TF V+ + +R G Sbjct: 1 MNKTELVNSIASKSGLNKKNSEAALNALISSVEETLEKGDKVVLVGFGTFEVRNRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ I + VFKA LK I Sbjct: 61 RNPQTKKEITIPASKAPVFKAGKGLKDIINK 91 >gi|241764284|ref|ZP_04762314.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241366353|gb|EER60883.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 116 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 54/96 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + + GL++++S + F+ I V G+ +K+S F F ++ K Sbjct: 21 TPALTKAQLADLLFDQIGLNKRESKDMIDAFFDLIAQRLVDGKDVKLSGFGNFQIRTKAP 80 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R GRN +T + + I RRVV F ASS LK++I + Sbjct: 81 RPGRNPRTGEAIPIQARRVVTFHASSKLKEQIQAAV 116 >gi|90421919|ref|YP_530289.1| integration host factor subunit beta [Rhodopseudomonas palustris BisB18] gi|123275679|sp|Q21CB6|IHFB_RHOPB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|90103933|gb|ABD85970.1| integration host factor, beta subunit [Rhodopseudomonas palustris BisB18] Length = 101 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T V +D + V FK +++R+ D Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDTGA 96 >gi|259906948|ref|YP_002647304.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96] gi|224962570|emb|CAX54025.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96] gi|283476742|emb|CAY72577.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae DSM 12163] Length = 90 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V Q+ R+G Sbjct: 1 MNKTQLIDIIADKADLSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNQRAGRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E++I V F + LK+ + Sbjct: 61 RNPKTGNEIQIAASTVPAFTSGKALKEAVK 90 >gi|192359929|ref|YP_001980677.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107] gi|190686094|gb|ACE83772.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107] Length = 91 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D+V +++ LS + V+ +I ++ RGE++ + F +F V ++ +R G Sbjct: 1 MNKTDIVVAVANTVELSAHKADLVVSAFVEQITNALARGESVALLGFGSFQVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I + V FKA LK + + Sbjct: 61 RNPQTGEAIQIAASKSVSFKAGKALKDAVNE 91 >gi|332975691|gb|EGK12576.1| integration host factor subunit alpha [Psychrobacter sp. 1501(2011)] Length = 105 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 59/93 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T++D++ + +FG +R+ V + F+EI D+ V G +K+S F F +K K SR Sbjct: 6 ETLTKADIIDHLVSKFGFTRQQGRMLVDSFFDEIYDNLVEGRDVKLSGFGNFILKDKKSR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +EV+I RRVV FKA L++++ Sbjct: 66 PGRNPKTGEEVQISARRVVTFKAGQKLRRQVEG 98 >gi|309781951|ref|ZP_07676682.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] gi|308919295|gb|EFP64961.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] Length = 90 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V ++ SR G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGKRSSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I+ +V FK LK + Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALKDALN 90 >gi|283784266|ref|YP_003364131.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168] gi|282947720|emb|CBG87275.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168] Length = 95 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 6 VNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFSVKERAARTG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F+A LK + Sbjct: 66 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 95 >gi|258621310|ref|ZP_05716344.1| integration host factor beta subunit [Vibrio mimicus VM573] gi|258625366|ref|ZP_05720263.1| integration host factor beta subunit [Vibrio mimicus VM603] gi|262166044|ref|ZP_06033781.1| integration host factor beta subunit [Vibrio mimicus VM223] gi|262171092|ref|ZP_06038770.1| integration host factor beta subunit [Vibrio mimicus MB-451] gi|258582357|gb|EEW07209.1| integration host factor beta subunit [Vibrio mimicus VM603] gi|258586698|gb|EEW11413.1| integration host factor beta subunit [Vibrio mimicus VM573] gi|261892168|gb|EEY38154.1| integration host factor beta subunit [Vibrio mimicus MB-451] gi|262025760|gb|EEY44428.1| integration host factor beta subunit [Vibrio mimicus VM223] Length = 92 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + GE I+I F +F + + R+ Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|118602405|ref|YP_903620.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567344|gb|ABL02149.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 91 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ D++R + + I + + ++++ F +F V+ + +R G Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I +V FKA LK+ + Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVNK 91 >gi|83854722|ref|ZP_00948252.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1] gi|83941245|ref|ZP_00953707.1| integration host factor beta subunit [Sulfitobacter sp. EE-36] gi|83842565|gb|EAP81732.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1] gi|83847065|gb|EAP84940.1| integration host factor beta subunit [Sulfitobacter sp. EE-36] Length = 94 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ L ++D R V T+F EI + G+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITGAMSDGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK +L+ R+ + Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGN 93 >gi|86357227|ref|YP_469119.1| nucleoid DNA-binding protein [Rhizobium etli CFN 42] gi|118255|sp|P02348|DBH5_RHILE RecName: Full=DNA-binding protein HRL53; AltName: Full=HU-like protein; AltName: Full=Px gi|3694946|gb|AAC62499.1| HU-like protein [Rhizobium leguminosarum] gi|29650883|gb|AAO86518.1| Hurl [Rhizobium leguminosarum bv. viciae] gi|86281329|gb|ABC90392.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CFN 42] Length = 91 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F+ + I+++ F +F V + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91 >gi|189499304|ref|YP_001958774.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] gi|189494745|gb|ACE03293.1| histone family protein DNA-binding protein [Chlorobium phaeobacteroides BS1] Length = 90 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++LV+ I+ + GL++ D+ R V+ N + G+ I + F TF ++ +R G Sbjct: 1 MSKAELVEKIASQAGLTKADAERAVSAFVNVVTAGLKAGDDITLVGFGTFSTGERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I ++VV FKA L+ + Sbjct: 61 RNPQTGETISIAAKKVVKFKAGKALRDEVA 90 >gi|296133003|ref|YP_003640250.1| histone family protein DNA-binding protein [Thermincola sp. JR] gi|296031581|gb|ADG82349.1| histone family protein DNA-binding protein [Thermincola potens JR] Length = 94 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV ++++ L +KD + V +F I ++ RGE + F TF VKQ+ +R Sbjct: 1 MTKTDLVAQVAEKVSNLKKKDCEKAVNAVFQSIQEALARGEKAQFIGFGTFEVKQRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +E+KI +V VFKA LK + Sbjct: 61 GRNPQTGKEIKIPASKVPVFKAGKALKDAVAK 92 >gi|163757832|ref|ZP_02164921.1| putative integration host factor beta subunit [Hoeflea phototrophica DFL-43] gi|162285334|gb|EDQ35616.1| putative integration host factor beta subunit [Hoeflea phototrophica DFL-43] Length = 96 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV++++ L +D V + +EI D+ +G +++ F F VK + R Sbjct: 1 MIKSELVQAVAARNPHLYHRDVENIVNAVLDEITDALSQGTRVELRGFGAFSVKNRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V ++ + V FK L++R+ D + Sbjct: 61 GRNPRTGEPVFVEEKWVPFFKTGKELRERLNPDDK 95 >gi|159043576|ref|YP_001532370.1| integration host factor subunit beta [Dinoroseobacter shibae DFL 12] gi|189045035|sp|A8LSF5|IHFB_DINSH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|157911336|gb|ABV92769.1| integration host factor, beta subunit [Dinoroseobacter shibae DFL 12] Length = 95 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++ + L ++D R V T+F EI ++ G+ +++ F F VK + +R Sbjct: 1 MIRSELIQIVADENPHLYQRDVERIVNTVFEEIIEAMSNGDRVELRGFGAFSVKHRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVAVEAKSVPFFKTGKLLRDRLNG 92 >gi|159184652|ref|NP_354199.2| integration host factor subunit alpha [Agrobacterium tumefaciens str. C58] gi|23821752|sp|Q8UG61|IHFA_AGRT5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|159139950|gb|AAK86984.2| integration host factor alpha subunit [Agrobacterium tumefaciens str. C58] Length = 112 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 50/103 (48%), Positives = 75/103 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ RGE +K+SSFATF +++K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ RK + Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKAKQ 105 >gi|332653755|ref|ZP_08419499.1| DNA-binding protein HU [Ruminococcaceae bacterium D16] gi|332516841|gb|EGJ46446.1| DNA-binding protein HU [Ruminococcaceae bacterium D16] Length = 91 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + LS+KD+ +T I ++ R E +++ F +F VK + +RVG Sbjct: 1 MNKTELINAVADKTQLSKKDAEAAITATVEAIAEALTREEKVQLVGFGSFEVKTRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T E++I + VFKA LK + Sbjct: 61 RNPKTGTEIEIPQTKTPVFKAGKALKDAVAG 91 >gi|237746607|ref|ZP_04577087.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS] gi|229377958|gb|EEO28049.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS] Length = 90 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ + R + + I ++ + ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEYIAKSADISKAAAARSLDAVMEAITETLKKDGSVTLVGFGTFSVGERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI RV F+A +LK + Sbjct: 61 RNPRTGEEIKIKSARVPKFRAGKLLKDAVN 90 >gi|170728675|ref|YP_001762701.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] gi|169814022|gb|ACA88606.1| histone family protein DNA-binding protein [Shewanella woodyi ATCC 51908] Length = 90 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ G+ I I F +F + +R G Sbjct: 1 MNKTELVAKMAEHAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90 >gi|114564684|ref|YP_752198.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] gi|114335977|gb|ABI73359.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 90 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I++ L++ ++ R + + + ++ G+ I I F +F Q+ +R G Sbjct: 1 MNKSELIAKIAENAELTKAEAGRALKSFEEAVTEAMKNGDKISIVGFGSFETTQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLKDSVN 90 >gi|228942908|ref|ZP_04105421.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976135|ref|ZP_04136633.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783586|gb|EEM31667.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816760|gb|EEM62872.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 93 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 52/92 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L K ++++ L++KD+ + N I + E ++I F TF V+++ +R Sbjct: 2 QKMNKTELTKVVAEKAELTQKDAAAATQAVLNTITSALTNEEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93 >gi|254282572|ref|ZP_04957540.1| integration host factor, alpha subunit [gamma proteobacterium NOR51-B] gi|219678775|gb|EED35124.1| integration host factor, alpha subunit [gamma proteobacterium NOR51-B] Length = 104 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 51/92 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S++ + + +E GL+++++ V F EI E +K+S F F ++ K R Sbjct: 3 ALTKSEMAEKLFEELGLNKREAKELVEQFFEEIRICLENNEQMKLSGFGNFDLRDKSQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I RRVV F+ LK R+ Sbjct: 63 GRNPKTGEEIPISARRVVTFRPGQKLKARVEQ 94 >gi|323519066|gb|ADX93447.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715] Length = 90 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K I+ L++ +T + + + I + G+ + + F TF VK++ +R G Sbjct: 1 MNKSELIKHIASSASLTQAQATAALNAVESGISKALAAGDDVALIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +V FKA LK+ + Sbjct: 61 RNPKTGEELKIAAAKVPSFKAGKALKEAVK 90 >gi|170744277|ref|YP_001772932.1| integration host factor subunit alpha [Methylobacterium sp. 4-46] gi|226709735|sp|B0UR46|IHFA_METS4 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|168198551|gb|ACA20498.1| integration host factor, alpha subunit [Methylobacterium sp. 4-46] Length = 104 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 4/105 (3%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RVGRN +T EV I+PRRV+VFK S++LK RI G DD Sbjct: 63 RVGRNPKTGVEVAIEPRRVMVFKPSNVLKARIN----GGAAEPDD 103 >gi|296491988|ref|YP_003662455.1| DNA-binding protein HU-beta [Xenorhabdus nematophila ATCC 19061] gi|289176875|emb|CBJ93046.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Xenorhabdus nematophila ATCC 19061] Length = 90 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TF VK++ +R G Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFQVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I ++ FKA LK + Sbjct: 61 RNPQTGENIQIAAAKIPGFKAGKGLKDSVN 90 >gi|261867382|ref|YP_003255304.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390874|ref|ZP_06635208.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412714|gb|ACX82085.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951408|gb|EFE01527.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans D7S-1] Length = 90 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S +GEA+++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASSAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V F + LK + Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAVK 90 >gi|322419725|ref|YP_004198948.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320126112|gb|ADW13672.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 92 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVEKIYEKVGFSKKESAELVETVFDLIKSTLEDGDKIKIAGFGNFVVKEKSDRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAIN 90 >gi|86136033|ref|ZP_01054612.1| integration host factor beta subunit [Roseobacter sp. MED193] gi|85826907|gb|EAQ47103.1| integration host factor beta subunit [Roseobacter sp. MED193] Length = 94 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ D+ RG+ +++ F F VKQ+ SRV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKQRDSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVQVEEKHVPFFKTGKLLRDRLNG 92 >gi|116251457|ref|YP_767295.1| DNA-binding protein HU [Rhizobium leguminosarum bv. viciae 3841] gi|115256105|emb|CAK07186.1| putative DNA-binding protein HU [Rhizobium leguminosarum bv. viciae 3841] Length = 91 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F+ + I+++ F +F V + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90 >gi|170750364|ref|YP_001756624.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|226709734|sp|B1LZ99|IHFA_METRJ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|170656886|gb|ACB25941.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 106 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 1/105 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLSEAVYHQVGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RVGRN +T EV I+PR+V+VFK S++LK +I + G + DD Sbjct: 63 RVGRNPKTGVEVAIEPRQVMVFKPSNVLKAKIN-GLNGAGEHDDD 106 >gi|37679485|ref|NP_934094.1| integration host factor subunit beta [Vibrio vulnificus YJ016] gi|61213552|sp|Q7MLX5|IHFB_VIBVY RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|37198229|dbj|BAC94065.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016] Length = 93 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERV 90 >gi|212709793|ref|ZP_03317921.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens DSM 30120] gi|212687604|gb|EEB47132.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K V + + D+ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLAEGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|121602375|ref|YP_988864.1| DNA-binding protein HU-beta [Bartonella bacilliformis KC583] gi|120614552|gb|ABM45153.1| DNA-binding protein HU-beta [Bartonella bacilliformis KC583] Length = 92 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+ + G+S+ + + + ++ G +++ F +F V ++ + G Sbjct: 1 MNKSELVNSIAAKAGVSKAQAGSVLDAFIASVTEALGEGGDVRLPGFGSFEVSRRAATKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I R V F A LK+ + Sbjct: 61 RNPSTGAEINIPARSVPKFSAGKNLKEAVNK 91 >gi|313904045|ref|ZP_07837425.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] gi|313471194|gb|EFR66516.1| histone family protein DNA-binding protein [Eubacterium cellulosolvens 6] Length = 89 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ V+ I+++ G ++KD+ FV I ++ G+ + F T+ V+++ +R G Sbjct: 1 MNKTEFVQKIAEKTGSTKKDAAAFVDAYAEVITEALKSGDKVAFPGFGTYEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN T + ++I + FKA LK Sbjct: 61 RNPATGETIQIAASKSPAFKAGKALKDA 88 >gi|83945692|ref|ZP_00958037.1| integration host factor beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83850893|gb|EAP88753.1| integration host factor beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 94 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ +++E L +KD R V T+ EI + RG+ +++ F F V+ + R Sbjct: 1 MIKSELIEKLAEENPHLYQKDLERVVNTVLEEITQALERGDRVELRGFGAFSVRNRPPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPRTGEPVSVKEKHVPFFKTGKELRERV 90 >gi|119945141|ref|YP_942821.1| integration host factor, alpha subunit [Psychromonas ingrahamii 37] gi|166918519|sp|A1SUQ7|IHFA_PSYIN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|119863745|gb|ABM03222.1| integration host factor, alpha subunit [Psychromonas ingrahamii 37] Length = 100 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S + GLS++++ FV + F EI + GEA+KIS F F +K K R Sbjct: 2 ALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+A LK+ + +M Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVEKNMP 96 >gi|163746487|ref|ZP_02153845.1| integration host factor, alpha subunit [Oceanibulbus indolifex HEL-45] gi|161380372|gb|EDQ04783.1| integration host factor, alpha subunit [Oceanibulbus indolifex HEL-45] Length = 92 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 61/90 (67%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S + V + + D+ V GE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAQLVEAVLEHMSDALVEGEQVKISSFGTFSVRDKTARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I+PRRV+ F+ S ++K R+ + + Sbjct: 62 TGEEVPINPRRVLTFRPSHLMKDRVAEGNK 91 >gi|78188542|ref|YP_378880.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] gi|78170741|gb|ABB27837.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] Length = 102 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 58/99 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T++DLV I+ + GL++ ++ V LF I +S G I+I F +F+++QK Sbjct: 1 MGNTTTKADLVAVIAHKTGLTKNETEAVVDGLFESIIESLKAGRRIEIRGFGSFNIRQKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 R RN +T + V++DP++V FK S K + + ++G Sbjct: 61 FRKARNPRTGESVEVDPKQVPAFKISKEFKLAVSESLKG 99 >gi|146282847|ref|YP_001173000.1| integration host factor subunit beta [Pseudomonas stutzeri A1501] gi|166975883|sp|A4VMF7|IHFB_PSEU5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|145571052|gb|ABP80158.1| integration host factor, beta subunit [Pseudomonas stutzeri A1501] gi|327481185|gb|AEA84495.1| integration host factor subunit beta [Pseudomonas stutzeri DSM 4166] Length = 93 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I + GL S KD + T+ ++ + GE I+I F +F + + RV Sbjct: 1 MTKSELIERIVTQQGLLSSKDVELAIKTMLEQMAQALATGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T Q V +D + V FK L+ R+ DD Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNDD 93 >gi|15641916|ref|NP_231548.1| integration host factor subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591425|ref|ZP_01678704.1| integration host factor, beta subunit [Vibrio cholerae 2740-80] gi|147673848|ref|YP_001217447.1| integration host factor subunit beta [Vibrio cholerae O395] gi|153819865|ref|ZP_01972532.1| integration host factor, beta subunit [Vibrio cholerae NCTC 8457] gi|153824201|ref|ZP_01976868.1| integration host factor, beta subunit [Vibrio cholerae B33] gi|153825168|ref|ZP_01977835.1| integration host factor, beta subunit [Vibrio cholerae MZO-2] gi|227082044|ref|YP_002810595.1| integration host factor, beta subunit [Vibrio cholerae M66-2] gi|229507990|ref|ZP_04397495.1| integration host factor beta subunit [Vibrio cholerae BX 330286] gi|229511772|ref|ZP_04401251.1| integration host factor beta subunit [Vibrio cholerae B33] gi|229515300|ref|ZP_04404760.1| integration host factor beta subunit [Vibrio cholerae TMA 21] gi|229518910|ref|ZP_04408353.1| integration host factor beta subunit [Vibrio cholerae RC9] gi|229521836|ref|ZP_04411253.1| integration host factor beta subunit [Vibrio cholerae TM 11079-80] gi|229523934|ref|ZP_04413339.1| integration host factor beta subunit [Vibrio cholerae bv. albensis VL426] gi|229529060|ref|ZP_04418450.1| integration host factor beta subunit [Vibrio cholerae 12129(1)] gi|229607536|ref|YP_002878184.1| integration host factor subunit beta [Vibrio cholerae MJ-1236] gi|254286725|ref|ZP_04961679.1| integration host factor, beta subunit [Vibrio cholerae AM-19226] gi|254849002|ref|ZP_05238352.1| integration host factor subunit beta [Vibrio cholerae MO10] gi|255745327|ref|ZP_05419276.1| integration host factor beta subunit [Vibrio cholera CIRS 101] gi|261210555|ref|ZP_05924848.1| integration host factor beta subunit [Vibrio sp. RC341] gi|262167469|ref|ZP_06035176.1| integration host factor beta subunit [Vibrio cholerae RC27] gi|262404267|ref|ZP_06080822.1| integration host factor beta subunit [Vibrio sp. RC586] gi|297579431|ref|ZP_06941359.1| integration host factor subunit beta [Vibrio cholerae RC385] gi|298498049|ref|ZP_07007856.1| integration host factor, beta subunit [Vibrio cholerae MAK 757] gi|14194866|sp|Q9KQT4|IHFB_VIBCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|172047649|sp|A5F6Y4|IHFB_VIBC3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803542|sp|C3LNL8|IHFB_VIBCM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|9656449|gb|AAF95062.1| integration host factor, beta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546720|gb|EAX56896.1| integration host factor, beta subunit [Vibrio cholerae 2740-80] gi|126509595|gb|EAZ72189.1| integration host factor, beta subunit [Vibrio cholerae NCTC 8457] gi|126518277|gb|EAZ75502.1| integration host factor, beta subunit [Vibrio cholerae B33] gi|146315731|gb|ABQ20270.1| integration host factor, beta subunit [Vibrio cholerae O395] gi|149741147|gb|EDM55198.1| integration host factor, beta subunit [Vibrio cholerae MZO-2] gi|150423152|gb|EDN15099.1| integration host factor, beta subunit [Vibrio cholerae AM-19226] gi|227009932|gb|ACP06144.1| integration host factor, beta subunit [Vibrio cholerae M66-2] gi|227013812|gb|ACP10022.1| integration host factor, beta subunit [Vibrio cholerae O395] gi|229332834|gb|EEN98320.1| integration host factor beta subunit [Vibrio cholerae 12129(1)] gi|229337515|gb|EEO02532.1| integration host factor beta subunit [Vibrio cholerae bv. albensis VL426] gi|229340761|gb|EEO05766.1| integration host factor beta subunit [Vibrio cholerae TM 11079-80] gi|229343599|gb|EEO08574.1| integration host factor beta subunit [Vibrio cholerae RC9] gi|229348005|gb|EEO12964.1| integration host factor beta subunit [Vibrio cholerae TMA 21] gi|229351737|gb|EEO16678.1| integration host factor beta subunit [Vibrio cholerae B33] gi|229355495|gb|EEO20416.1| integration host factor beta subunit [Vibrio cholerae BX 330286] gi|229370191|gb|ACQ60614.1| integration host factor beta subunit [Vibrio cholerae MJ-1236] gi|254844707|gb|EET23121.1| integration host factor subunit beta [Vibrio cholerae MO10] gi|255737157|gb|EET92553.1| integration host factor beta subunit [Vibrio cholera CIRS 101] gi|260840340|gb|EEX66911.1| integration host factor beta subunit [Vibrio sp. RC341] gi|262024166|gb|EEY42860.1| integration host factor beta subunit [Vibrio cholerae RC27] gi|262349299|gb|EEY98437.1| integration host factor beta subunit [Vibrio sp. RC586] gi|297537025|gb|EFH75858.1| integration host factor subunit beta [Vibrio cholerae RC385] gi|297542382|gb|EFH78432.1| integration host factor, beta subunit [Vibrio cholerae MAK 757] gi|327484458|gb|AEA78865.1| Integration host factor beta subunit [Vibrio cholerae LMA3894-4] Length = 92 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|289208392|ref|YP_003460458.1| integration host factor subunit beta [Thioalkalivibrio sp. K90mix] gi|288944023|gb|ADC71722.1| integration host factor, beta subunit [Thioalkalivibrio sp. K90mix] Length = 98 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S++++ L +D V L + + G+ ++I F +F + + R+ Sbjct: 1 MTKSELIESLAQKSPHLPARDVEMCVKALLERMSQALAHGQRVEIRGFGSFSLHFRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGEGVALPGKHVPHFKPGKELRERVN 91 >gi|70724919|ref|YP_257126.1| hypothetical protein pSG3GP_17 [Sodalis glossinidius] gi|68697150|emb|CAI59408.1| hypothetical protein pSG3.17 [Sodalis glossinidius] Length = 90 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++++S++ +S+ + + + + + S G+ +KI+ F TF VK + R G Sbjct: 1 MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RV F+A LK+ + Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89 >gi|167768371|ref|ZP_02440424.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1] gi|317497690|ref|ZP_07956005.1| bacterial DNA-binding protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709895|gb|EDS20474.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1] gi|291560344|emb|CBL39144.1| Bacterial nucleoid DNA-binding protein [butyrate-producing bacterium SSC/2] gi|316895024|gb|EFV17191.1| bacterial DNA-binding protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 91 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+K+ LS+KD+ + + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELVAAIAKKTELSKKDAEKALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + + I + FKA LK + + Sbjct: 61 RNPRSGEVMHIAASKAPKFKAGKALKDIVNE 91 >gi|84500257|ref|ZP_00998523.1| integration host factor beta subunit [Oceanicola batsensis HTCC2597] gi|84392191|gb|EAQ04459.1| integration host factor beta subunit [Oceanicola batsensis HTCC2597] Length = 94 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D + V +F+EI ++ RG+ +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLYQRDVEKIVNVIFDEIIEAMARGDRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLNG 92 >gi|116623390|ref|YP_825546.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|116226552|gb|ABJ85261.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 112 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 54/92 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL++ +S+ ++RK+S V +F+ I S G+ I+I F +F +Q+ R+G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T V++ +++ FK S LK + + Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVNNS 92 >gi|187923899|ref|YP_001895541.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|187715093|gb|ACD16317.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] Length = 90 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +S+ + R + + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHVAQQADISKAAAGRALDAVIDGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90 >gi|319407314|emb|CBI80955.1| integration host factor alpha subunit [Bartonella sp. 1-1C] Length = 103 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 52/100 (52%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + +EIC+S VRGE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRV+ FKA+++LKKRI+D R +K Sbjct: 63 RVGRNPKTGVEASIPPRRVITFKAANVLKKRILDTHRAKK 102 >gi|261344289|ref|ZP_05971933.1| integration host factor, beta subunit [Providencia rustigianii DSM 4541] gi|282567893|gb|EFB73428.1| integration host factor, beta subunit [Providencia rustigianii DSM 4541] Length = 95 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K V + + D+ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLASGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|197118378|ref|YP_002138805.1| integration host factor subunit alpha [Geobacter bemidjiensis Bem] gi|253700842|ref|YP_003022031.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|197087738|gb|ACH39009.1| integration host factor, alpha subunit [Geobacter bemidjiensis Bem] gi|251775692|gb|ACT18273.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 92 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + G+ IKI+ F F VK+K R G Sbjct: 1 MTKADIVEKIYEKVGFSKKESAELVETVFDLIKTTLEEGDKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGEEITIVARKILTFKPSQVLKSAIN 90 >gi|254512178|ref|ZP_05124245.1| integration host factor, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221535889|gb|EEE38877.1| integration host factor, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 94 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ D+ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRLNG 92 >gi|304310684|ref|YP_003810282.1| Integration host factor beta subunit [gamma proteobacterium HdN1] gi|301796417|emb|CBL44625.1| Integration host factor beta subunit [gamma proteobacterium HdN1] Length = 99 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ K+ LS+KD + TL + + G I+I F +F + + +R Sbjct: 1 MTKSELIEKVASKQPQLSQKDVELAIKTLLEGMSQTLATGGRIEIRGFGSFSLHYRSART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T + V + + V FK L++R+ G Sbjct: 61 GRNPKTGESVDLTGKYVPHFKPGKELRERVNLGEDGA 97 >gi|262274460|ref|ZP_06052271.1| integration host factor beta subunit [Grimontia hollisae CIP 101886] gi|262221023|gb|EEY72337.1| integration host factor beta subunit [Grimontia hollisae CIP 101886] Length = 93 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K + + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMATTLEEGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVN 91 >gi|299135072|ref|ZP_07028263.1| integration host factor, alpha subunit [Afipia sp. 1NLS2] gi|298590049|gb|EFI50253.1| integration host factor, alpha subunit [Afipia sp. 1NLS2] Length = 114 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 47/95 (49%), Positives = 67/95 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR DL +++ ++ GLSR +S FV + EI D +GE +K+SSF +F V++KG Sbjct: 5 GKTVTRVDLCEAVYQKVGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGE 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T EV I PRRV+VFK S+ILK+RI + Sbjct: 65 RIGRNPKTGTEVPISPRRVMVFKPSAILKQRINNG 99 >gi|149186061|ref|ZP_01864375.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21] gi|148830092|gb|EDL48529.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21] Length = 102 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 64/94 (68%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL ++I+++ GLSR +S V + ++ D+ RGE +KIS F +F ++ K RV Sbjct: 9 TLTRADLAETINRKMGLSRAESLDLVEEILGKMSDALARGENVKISGFGSFVLRDKKERV 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T EV I PRRV+ F+AS +LK+RI + Sbjct: 69 GRNPKTGVEVPITPRRVMTFRASQLLKERIANSY 102 >gi|325292554|ref|YP_004278418.1| integration host factor subunit alpha [Agrobacterium sp. H13-3] gi|325060407|gb|ADY64098.1| integration host factor subunit alpha [Agrobacterium sp. H13-3] Length = 112 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 50/103 (48%), Positives = 75/103 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +S+ ++ GLSR +S V T+ +EIC++ RGE +K+SSFATF +++K Sbjct: 3 GKTVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R+GRN +T +EV I PRRV+ FKAS++LK+RI+ RK + Sbjct: 63 RIGRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARKTKQ 105 >gi|315126549|ref|YP_004068552.1| integration host factor (IHF), beta subunit, site-specific recombination [Pseudoalteromonas sp. SM9913] gi|315015063|gb|ADT68401.1| integration host factor (IHF), beta subunit, site-specific recombination [Pseudoalteromonas sp. SM9913] Length = 95 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++++++ + KD V + ++ S + I+I F +F + + R Sbjct: 1 MTKSELIETLAEQHSHIPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++D + V FK L+ R+ + + Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRDRVNESIA 95 >gi|78222088|ref|YP_383835.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78193343|gb|ABB31110.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 95 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++++ L+RKDS V +F+ I D+ RGE ++I F +F V+++G+R Sbjct: 1 MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ VKI ++ FK L++R+ Sbjct: 61 ARNPKSGDVVKIPAKKTPFFKTGKELRERVN 91 >gi|125470062|gb|ABN42254.1| gp50 [Sodalis phage phiSG1] Length = 90 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++++S++ +S+ + + L + + G+ + + F TF VK + R G Sbjct: 1 MNKPELIRAVSEKADISQAKAGLVIDALTEAVTQTLAAGDVVSLVGFGTFEVKSRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RV F+A LK+ + Sbjct: 61 RNPKTGEAMTIPAARVPAFRAGKGLKEAV 89 >gi|71906960|ref|YP_284547.1| integration host factor, alpha subunit [Dechloromonas aromatica RCB] gi|71846581|gb|AAZ46077.1| Integration host factor, alpha subunit [Dechloromonas aromatica RCB] Length = 113 Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 37/97 (38%), Positives = 54/97 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S TIT++DL + +S E G + +++ V F E+ D RGE IK++ F F ++ K Sbjct: 8 SMTITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPE 67 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T +E+ I RRVV F AS LK + Sbjct: 68 RPGRNPKTGEEIPITARRVVTFHASGCLKSAVESSPN 104 >gi|238917311|ref|YP_002930828.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750] gi|238872671|gb|ACR72381.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750] Length = 99 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 53/99 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+++ LS+KD+ + V + + + GE I++ F TF V ++ +R G Sbjct: 1 MNKSELVAAIAEKAELSKKDAEKAVKAFTDTVAEQLKAGEKIQLVGFGTFEVAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 +N QT + ++I + FKA LK + + K Sbjct: 61 KNPQTGKAIQIPASKAPKFKAGKALKDVVNTPAKKSKKK 99 >gi|254447100|ref|ZP_05060567.1| integration host factor, alpha subunit [gamma proteobacterium HTCC5015] gi|198263239|gb|EDY87517.1| integration host factor, alpha subunit [gamma proteobacterium HTCC5015] Length = 92 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 50/85 (58%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + E GL+++++ V F+EI ++ GE +K+S F F +++K R GRN +T Sbjct: 1 MAECLFDELGLNKREAKELVELFFDEIREALAEGEDVKLSGFGNFTLREKSQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPISARRVVTFRPGQKLKSRVE 85 >gi|91775279|ref|YP_545035.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] gi|91775423|ref|YP_545179.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] gi|91709266|gb|ABE49194.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] gi|91709410|gb|ABE49338.1| integration host factor, beta subunit [Methylobacillus flagellatus KT] Length = 95 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V T+ + + ++ GE I+I F +F + + R+ Sbjct: 1 MTKSELIANLAARFPQLVVKDAELSVKTILDSMTENLASGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T ++V++ + V FKA L++R+ + Sbjct: 61 GRNPKTGEKVQVPEKHVPHFKAGKELRERVDGNSN 95 >gi|94499185|ref|ZP_01305723.1| integration host factor alpha subunit [Oceanobacter sp. RED65] gi|94428817|gb|EAT13789.1| integration host factor alpha subunit [Oceanobacter sp. RED65] Length = 104 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 50/98 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ + + E GL+++++ V F EI E +K+S F F +++K R Sbjct: 3 AVTKADMAEKLFDELGLNKREAKEMVDIFFEEIRHCLTEKEQVKLSGFGNFDLREKRQRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T +E+ I R VV F+ LK ++ Sbjct: 63 GRNPKTGEEIPISARCVVTFRPGQKLKVQVEAYNEANP 100 >gi|29654755|ref|NP_820447.1| DNA-binding protein HU [Coxiella burnetii RSA 493] gi|154705755|ref|YP_001423922.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111] gi|161830880|ref|YP_001597305.1| DNA-binding protein HU [Coxiella burnetii RSA 331] gi|165919394|ref|ZP_02219460.1| DNA-binding protein HU [Coxiella burnetii RSA 334] gi|212212172|ref|YP_002303108.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212] gi|212219188|ref|YP_002305975.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154] gi|29542023|gb|AAO90961.1| DNA-binding protein HU [Coxiella burnetii RSA 493] gi|154355041|gb|ABS76503.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111] gi|161762747|gb|ABX78389.1| DNA-binding protein HU [Coxiella burnetii RSA 331] gi|165916910|gb|EDR35514.1| DNA-binding protein HU [Coxiella burnetii RSA 334] gi|212010582|gb|ACJ17963.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212] gi|212013450|gb|ACJ20830.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154] Length = 94 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I++ +S+ + R + + + S GE + + F +F Q+ +R G Sbjct: 1 MNKNELIEVIAQSADISKNAAGRALDAFVDSVTKSLQEGEDVVLVGFGSFTTSQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT ++I V FKA LK + + Sbjct: 61 RNPQTGDTMQIPAATVARFKAGKKLKDAVNKE 92 >gi|153875700|ref|ZP_02003384.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS] gi|152067837|gb|EDN66617.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS] Length = 98 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 55/93 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ + + + E GL+++++ V F E+ + +GE++K+S F F ++ K R Sbjct: 2 ALTKAAMAEKLFDEVGLNKREAKDMVDRFFEEVRAALEKGESVKLSGFGNFDLRDKKQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T QE+ I RRVV F+ L+ R+ ++ Sbjct: 62 GRNPKTGQEIPISARRVVTFRPGQKLRARVEEN 94 >gi|288957040|ref|YP_003447381.1| integration host factor subunit beta [Azospirillum sp. B510] gi|288909348|dbj|BAI70837.1| integration host factor subunit beta [Azospirillum sp. B510] Length = 93 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L ++D + V T+F+EI ++ RG+ +++ F F +K++ +R Sbjct: 1 MTKSELIQRLAERNPHLYQRDIEKIVGTIFDEITEALARGDRVELRGFGAFSIKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + + FK L++R+ D Sbjct: 61 GRNPRTGESVDVGEKCIPFFKTGKQLRERLNTD 93 >gi|254428433|ref|ZP_05042140.1| integration host factor, beta subunit [Alcanivorax sp. DG881] gi|196194602|gb|EDX89561.1| integration host factor, beta subunit [Alcanivorax sp. DG881] Length = 116 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%) Query: 4 TITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+L++ I+ ++ LS KD V TL ++ DS G I+I F +F + + R Sbjct: 2 ALTKSELIERIADRQAQLSPKDVELAVKTLIEQMADSLAGGGRIEIRGFGSFSLHFRAPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 VGRN +T V++ + V FK L++R+ + + + D+ S Sbjct: 62 VGRNPKTGASVELHGKYVPHFKPGKELRERVNESLTDSGEDVDNNGS 108 >gi|311104917|ref|YP_003977770.1| integration host factor subunit beta [Achromobacter xylosoxidans A8] gi|310759606|gb|ADP15055.1| integration host factor, beta subunit [Achromobacter xylosoxidans A8] Length = 119 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 63/110 (57%), Gaps = 5/110 (4%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ ++V + ++V FKA L++R+ D+ G N +D S S Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGG--NDEDAQSSGSS 106 >gi|210623292|ref|ZP_03293709.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM 13275] gi|210153693|gb|EEA84699.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM 13275] Length = 92 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++K++ + + ++ V GE +++ F TF + + +R G Sbjct: 1 MNKAELVSKMAEKSELTKKEAEAALNAFMESVEEALVSGEKVQLVGFGTFETRDRAARQG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94 RN + +E + I + VFKA LK ++ Sbjct: 61 RNPRNPEEVISIPASKAPVFKAGKGLKDKVN 91 >gi|114762844|ref|ZP_01442276.1| integration host factor, alpha subunit [Pelagibaca bermudensis HTCC2601] gi|114544454|gb|EAU47461.1| integration host factor, alpha subunit [Roseovarius sp. HTCC2601] Length = 92 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 62/90 (68%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S V ++ + D+ VRGE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAELVESVLQHMSDALVRGEQVKISSFGTFSVRDKAARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T +EV I PRRV+ F+ S ++K+++ + + Sbjct: 62 TGEEVPIQPRRVLTFRPSHLMKEQVAEGNK 91 >gi|49475535|ref|YP_033576.1| integration host factor subunit alpha [Bartonella henselae str. Houston-1] gi|81647942|sp|Q6G3K3|IHFA_BARHE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49238341|emb|CAF27565.1| Integration host factor alpha-subunit [Bartonella henselae str. Houston-1] Length = 108 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 54/100 (54%), Positives = 73/100 (73%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + ++ GLS +S V + NEIC+S VRGEA+K+SSFATF V++K Sbjct: 3 SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRKKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LK+RI+D R R+ Sbjct: 63 RVGRNPKTGVEAPILPRRVVTFKAANVLKQRILDSHRARQ 102 >gi|257066457|ref|YP_003152713.1| histone family protein DNA-binding protein [Anaerococcus prevotii DSM 20548] gi|256798337|gb|ACV28992.1| histone family protein DNA-binding protein [Anaerococcus prevotii DSM 20548] Length = 92 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ + + + +S V G+ +++ F TF V+ + +R G Sbjct: 1 MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLVEGDKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92 >gi|254447175|ref|ZP_05060642.1| integration host factor, beta subunit [gamma proteobacterium HTCC5015] gi|198263314|gb|EDY87592.1| integration host factor, beta subunit [gamma proteobacterium HTCC5015] Length = 102 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 3 KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+T+S+L++++S++ L+ KD V TL E+ ++ G+ I+I F +F + + Sbjct: 5 PTVTKSELIENLSRKQPHLAYKDVELAVKTLLEEMSNALSGGQRIEIRGFGSFSLHYRPP 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T + V + + V FK L++ + + Sbjct: 65 RVGRNPKTGESVALPGKYVPHFKPGKQLRECVNES 99 >gi|77919056|ref|YP_356871.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380] gi|77545139|gb|ABA88701.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380] Length = 92 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 54/92 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++++ GL+ K + V + + + D+ V G I+I F + VK + +G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +E+++ P+++ FK L++RI Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERINKS 92 >gi|17546433|ref|NP_519835.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000] gi|207723583|ref|YP_002253982.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2] gi|207743053|ref|YP_002259445.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609] gi|300691407|ref|YP_003752402.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum PSI07] gi|300703975|ref|YP_003745577.1| DNA-binding protein hu-beta, transcriptional regulator subunit beta [Ralstonia solanacearum CFBP2957] gi|17428731|emb|CAD15416.1| probable dna-binding protein hu-beta [Ralstonia solanacearum GMI1000] gi|206588785|emb|CAQ35748.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2] gi|206594450|emb|CAQ61377.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609] gi|299071638|emb|CBJ42962.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum CFBP2957] gi|299078467|emb|CBJ51119.1| DNA-binding protein HU-beta, transcriptional regulator, beta subunit [Ralstonia solanacearum PSI07] Length = 90 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L I D+ G ++ + F TF V Q+ +R G Sbjct: 1 MNKTDLIDHVAAQTDMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI+ +V FK LK + Sbjct: 61 RNPRTGATIKIEGAKVAKFKPGKALKDALN 90 >gi|126735022|ref|ZP_01750768.1| integration host factor, beta subunit [Roseobacter sp. CCS2] gi|126715577|gb|EBA12442.1| integration host factor, beta subunit [Roseobacter sp. CCS2] Length = 93 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++ + L ++D R V T+F EI ++ RG+ +++ F F VK++ R+ Sbjct: 1 MIRSELIQKLADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDQRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++D + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRLNGS 93 >gi|87199383|ref|YP_496640.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87135064|gb|ABD25806.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 90 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S++ GLS+ D+T+ V +F I + +G+ +++ F TF V ++ + G Sbjct: 1 MNKNDLIGSVADASGLSKGDATKAVEAVFESISGALAKGDEVRLVGFGTFSVAKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FKA LK + Sbjct: 61 RNPRTGEPMSIKASAQPKFKAGKGLKDAVN 90 >gi|293604178|ref|ZP_06686586.1| integration host factor beta subunit [Achromobacter piechaudii ATCC 43553] gi|292817403|gb|EFF76476.1| integration host factor beta subunit [Achromobacter piechaudii ATCC 43553] Length = 119 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 65/110 (59%), Gaps = 4/110 (3%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ ++V + ++V FKA L++R+ D + G ++D +S SG Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV-DLVGGN--DEDAQSSGSGE 107 >gi|163856201|ref|YP_001630499.1| integration host factor beta-subunit [Bordetella petrii DSM 12804] gi|226709770|sp|A9IJJ1|IHFB_BORPD RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|163259929|emb|CAP42230.1| integration host factor beta-subunit [Bordetella petrii] Length = 119 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 61/108 (56%), Gaps = 2/108 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ RV Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 GRN ++ ++V + ++V FKA L++R+ D G + D +P Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV-DLAGGLADTQPDGDAPD 107 >gi|109898780|ref|YP_662035.1| integration host factor, beta subunit [Pseudoalteromonas atlantica T6c] gi|332306875|ref|YP_004434726.1| integration host factor, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|123171106|sp|Q15T07|IHFB_PSEA6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|109701061|gb|ABG40981.1| integration host factor, beta subunit [Pseudoalteromonas atlantica T6c] gi|332174204|gb|AEE23458.1| integration host factor, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 96 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + +D + + ++ + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLADKARHVPSRDVELAIKEMLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V++D + V FK L++R+ +D+ Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRERVNEDL 94 >gi|315635141|ref|ZP_07890419.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393] gi|315476103|gb|EFU66857.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393] Length = 90 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + + I S +GEA+++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V F + LK + Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAVK 90 >gi|253996481|ref|YP_003048545.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] gi|253983160|gb|ACT48018.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] Length = 90 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++ E G+++ D+ R + + N + ++ G+ + + F TF V +K +R G Sbjct: 1 MNKSELVAKVAAEAGVTQADTNRVLDAIINTVGEALKAGDNVALVGFGTFQVTKKAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T ++I R VFKA LK ++ Sbjct: 61 RNPSTGATIQIAARNAPVFKAGKTLKDKVN 90 >gi|33592108|ref|NP_879752.1| integration host factor beta-subunit [Bordetella pertussis Tohama I] gi|33571752|emb|CAE41253.1| integration host factor beta-subunit [Bordetella pertussis Tohama I] gi|332381524|gb|AEE66371.1| integration host factor beta-subunit [Bordetella pertussis CS] Length = 119 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V + ++V FKA L++ + D+ G D Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELREWV--DLVGNDQGDDS 101 >gi|254460326|ref|ZP_05073742.1| integration host factor, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206676915|gb|EDZ41402.1| integration host factor, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 93 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++ + L ++D R V T+F EI ++ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKLADENPHLYQRDVERIVNTVFEEITETMARGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGESVPVEEKHVPFFKTGKLLRDRLNG 92 >gi|88705967|ref|ZP_01103675.1| Integration host factor beta-subunit [Congregibacter litoralis KT71] gi|88699681|gb|EAQ96792.1| Integration host factor beta-subunit [Congregibacter litoralis KT71] Length = 98 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I+ K+ LS KD V T+ ++ +S G I+I F +F + + R Sbjct: 1 MTKSELIEAIALKQTQLSTKDVELAVKTVIEQMSNSLSSGGRIEIRGFGSFSLHYREPRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T V++ + V FK L+ R+ ++ Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRDRVNLGLQA 96 >gi|220926815|ref|YP_002502117.1| integration host factor subunit alpha [Methylobacterium nodulans ORS 2060] gi|219951422|gb|ACL61814.1| integration host factor, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 105 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 47/95 (49%), Positives = 65/95 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLTEAVYQRVGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T EV I+PRRV+VFK S++LK RI Sbjct: 63 RVGRNPKTGVEVAIEPRRVMVFKPSNVLKARINGS 97 >gi|238021485|ref|ZP_04601911.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC 51147] gi|237868465|gb|EEP69471.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC 51147] Length = 101 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+++ GL++ D+ + V + D+ G++I + F TF V ++ +R G Sbjct: 1 MNKSELIEAIAQQAGLTKTDAGKAVDAFTAVVKDALKSGDSIALVGFGTFKVAERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 N +T + +KI RV F A LK Sbjct: 61 LNPRTKEAIKIPAARVPKFTAGKTLKD 87 >gi|187928947|ref|YP_001899434.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|187725837|gb|ACD27002.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] Length = 90 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ + +S+ + R + L + I D+ G ++ + F TF V ++ SR G Sbjct: 1 MNKTDLIDHVATQTDMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I+ +V FK LK + Sbjct: 61 RNPRTGAAITIEGGKVAKFKPGKALKDALN 90 >gi|94264784|ref|ZP_01288562.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93454773|gb|EAT05028.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 91 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++ E +++ D+ R V + + DS GE I I F TF V+++ ++ G Sbjct: 1 MNKGELVDKVAAEGKITKADADRLVKVVLGSMTDSLTNGEKITIPGFGTFEVRERAAKQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT V+I R+ V FK LK + Sbjct: 61 RNPQTGATVEIPARKAVAFKPGKTLKDVLNK 91 >gi|296116566|ref|ZP_06835176.1| integration host factor, alpha subunit [Gluconacetobacter hansenii ATCC 23769] gi|295976778|gb|EFG83546.1| integration host factor, alpha subunit [Gluconacetobacter hansenii ATCC 23769] Length = 105 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 2/106 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+TR+ L + I + GLSR +S + + ++ + G+ +KIS F TF V++KG Sbjct: 1 MS-TVTRATLAEQIYSQVGLSRHESADILEHVLEKVAHALEAGDTVKISGFGTFSVRKKG 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R GRN +T EV I PR V+VF+ S +L+ + D G +DD Sbjct: 60 RRTGRNPKTGVEVPILPRSVLVFRPSQLLRAHVNGDT-GHMNAEDD 104 >gi|159899915|ref|YP_001546162.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] gi|159892954|gb|ABX06034.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 92 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+K+I+++ GLS+ + + V L I ++ G+ + ++ F TF V+++ +R G Sbjct: 1 MHQSDLIKAIAEKSGLSQAQAGKAVNALLESITEALAAGDRVVLTGFGTFEVRERQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I R F A S LKK + + Sbjct: 61 FNPKTREPLEIPATRAPAFSAGSNLKKAVTE 91 >gi|87122168|ref|ZP_01078051.1| integration host factor beta-subunit [Marinomonas sp. MED121] gi|86162488|gb|EAQ63770.1| integration host factor beta-subunit [Marinomonas sp. MED121] Length = 101 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I ++ L +D + + + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIELLIDQQSHLPVQDVEQAIKAMLEHMSEVLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + + V FK L++ + Sbjct: 61 GRNPKTGESVDLVAKYVPHFKPGKELRELVN 91 >gi|330953536|gb|EGH53796.1| integration host factor subunit beta [Pseudomonas syringae Cit 7] Length = 98 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T Q V +D + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEE 95 >gi|238026537|ref|YP_002910768.1| integration host factor subunit beta [Burkholderia glumae BGR1] gi|237875731|gb|ACR28064.1| Integration host factor, beta subunit [Burkholderia glumae BGR1] Length = 108 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ ++V++ + V FK L++R+ D G D Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV-DGRAGEPLKHDSGGD 105 >gi|167755951|ref|ZP_02428078.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402] gi|237733268|ref|ZP_04563749.1| predicted protein [Mollicutes bacterium D7] gi|167703943|gb|EDS18522.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402] gi|229383649|gb|EEO33740.1| predicted protein [Coprobacillus sp. D7] Length = 91 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+ +++ D + VT + + ++ V+G+ + + F F V+++G R G Sbjct: 1 MNKTELVEAIASSTEMTKTDVDKVVTAFVDVVTEALVKGDKVSLKGFGNFEVRERGERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + FK+SS LK + Sbjct: 61 RNPRTGETMTIAASKAPAFKSSSALKNAVNK 91 >gi|254467817|ref|ZP_05081223.1| integration host factor, alpha subunit [beta proteobacterium KB13] gi|207086627|gb|EDZ63910.1| integration host factor, alpha subunit [beta proteobacterium KB13] Length = 98 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 55/97 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L + ++ GL++ +S V F +I + GE++K+S F F ++ K R Sbjct: 2 TLTKANLSNLLFEQVGLNKTESKEMVEAFFEQIKIALENGESVKLSGFGNFELRTKSERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T +EV I RRVV F +S LK + G+ Sbjct: 62 GRNPKTGEEVPIKARRVVTFHSSQKLKSSVDGGSSGK 98 >gi|323698417|ref|ZP_08110329.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323458349|gb|EGB14214.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 90 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ G S+ + + + + I D G + ++ F TF V ++ +R G Sbjct: 1 MTKAELVAKIAEKIGTSKAQAEASMNAILDTIQDELAAGNKLTLTGFGTFSVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I +V FK +LK + Sbjct: 61 RNPRTGTALNIPACKVAQFKPGKVLKDAVK 90 >gi|110834605|ref|YP_693464.1| integration host factor subunit beta [Alcanivorax borkumensis SK2] gi|110647716|emb|CAL17192.1| integration host factor beta-subunit [Alcanivorax borkumensis SK2] Length = 117 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Query: 4 TITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+S+L++ I+ ++ LS KD V TL ++ DS G I+I F +F + + R Sbjct: 2 ALTKSELIERIADRQAQLSPKDVELAVKTLIEQMADSLAGGGRIEIRGFGSFSLHFRAPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 VGRN +T V++ + V FK L++R+ + + D Sbjct: 62 VGRNPKTGASVELHGKYVPHFKPGKELRERVNESLSADSGEDVD 105 >gi|144899229|emb|CAM76093.1| Histone-like bacterial DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 95 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++ L ++D R VTT+F+EI ++ RG+ +++ F F VK + +R Sbjct: 1 MTKSELIARLAEKNPHLYQRDVERIVTTIFDEIAEALARGDRVELRGFGAFSVKSRDARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V +D + V FK L++R+ Sbjct: 61 GRNPRTGEQVAVDGKVVPFFKTGKQLRERLN 91 >gi|83719600|ref|YP_440564.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264] gi|83653425|gb|ABC37488.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264] Length = 126 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+++++ F +F ++ +R G Sbjct: 35 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 94 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 95 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 125 >gi|254419022|ref|ZP_05032746.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3] gi|196185199|gb|EDX80175.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3] Length = 103 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 66/99 (66%), Gaps = 2/99 (2%) Query: 1 MS--KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 MS +T+TR+DL +++ +E GLSR++ + V I +S +G+ +K+S F F V++ Sbjct: 2 MSGLQTVTRADLCEAVHEEVGLSRQECSALVERTLELIVESLEQGDTVKLSGFGVFQVRE 61 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 K +R+GRN +T + I+PRRV+ F+AS I+K R+ D + Sbjct: 62 KRARMGRNPKTGEPAAINPRRVISFRASQIMKSRVHDAV 100 >gi|319408456|emb|CBI82111.1| integration host factor alpha subunit [Bartonella schoenbuchensis R1] Length = 103 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 49/100 (49%), Positives = 71/100 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL ++ ++ GLS +S+ V + +EIC+S V+ E +K+SSFATF V+ K Sbjct: 3 GKTVTRADLASAVCRKVGLSYTESSALVELILDEICNSLVKDEVVKLSSFATFQVRSKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T E I PRRVV FKA++ILKKRI+D R ++ Sbjct: 63 RIGRNPKTGIEAPIPPRRVVTFKAANILKKRILDAHRAKQ 102 >gi|118579611|ref|YP_900861.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118502321|gb|ABK98803.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379] Length = 92 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ ++++E GL + D+ + ++ + + ++ +G+ + + F TF ++ +R G Sbjct: 1 MTKAELISAVAEESGLKKVDAEKALSAFISTVTEALKQGDKLSLVGFGTFCTSKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT +++ I + F+ LK + Sbjct: 61 QNPQTGKKINIPAATIPKFRPGKTLKDAVN 90 >gi|313673034|ref|YP_004051145.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939790|gb|ADR18982.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ I+ + GL + ++ + + + ++ G+ + + F TF V ++ +R G Sbjct: 1 MNKKDLIEKIATKAGLKKVEAEKALEAFEEAVVEALKSGDKVTLVGFGTFSVYERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI ++ F + K + Sbjct: 61 RNPQTGKEIKIPAKKAPKFTPGKLFKDSVK 90 >gi|312959706|ref|ZP_07774223.1| Integration host factor subunit beta [Pseudomonas fluorescens WH6] gi|311286423|gb|EFQ64987.1| Integration host factor subunit beta [Pseudomonas fluorescens WH6] Length = 97 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T Q V +D + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNED 93 >gi|197105121|ref|YP_002130498.1| integration host factor alpha-subunit [Phenylobacterium zucineum HLK1] gi|226709738|sp|B4RB18|IHFA_PHEZH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|196478541|gb|ACG78069.1| integration host factor alpha-subunit [Phenylobacterium zucineum HLK1] Length = 100 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 61/94 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ ++ GL+R+D V + +C + RGE +K+S F F V+ K +R+ Sbjct: 5 TVTRADLCEAVHEQVGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + I+PRRV+ F+AS ++K R+ + Sbjct: 65 GRNPKTGEPAAIEPRRVIGFRASQVMKARVDQAL 98 >gi|187777484|ref|ZP_02993957.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC 15579] gi|187774412|gb|EDU38214.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC 15579] Length = 109 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ L++KD+ + + + ++ GE +++ F TF +++ RVG Sbjct: 18 VNKSELITSMAEKSKLTKKDAEAALKSFIESVEEALEGGEKVQLVGFGTFETRERAERVG 77 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I VFKA LK+++ Sbjct: 78 RNPRTKEEITIPASIAPVFKAGKELKEKVNK 108 >gi|332186781|ref|ZP_08388523.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] gi|332013114|gb|EGI55177.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ GL R D+ + V +F I + +G+ +++ F TF V ++ + G Sbjct: 1 MNKQELIATVADSSGLVRGDAVKAVDAVFEAITAALKKGDEVRLVGFGTFSVSKRKASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I FK +LK + Sbjct: 61 RNPRTGEPMTIKASSQPKFKPGKLLKDSVN 90 >gi|329890646|ref|ZP_08268989.1| integration host factor, beta subunit [Brevundimonas diminuta ATCC 11568] gi|328845947|gb|EGF95511.1| integration host factor, beta subunit [Brevundimonas diminuta ATCC 11568] Length = 96 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ + L+ + R V + + ++ G +++ F F V+ + +R Sbjct: 1 MIKSELIEKLAAENLHLTHAEVERVVNVILGRMTETLSDGGRVELRGFGAFSVRSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ + V FK+ L++R+ Sbjct: 61 GRNPRTGETVEVPAKAVPFFKSGKELRERLNAS 93 >gi|167569600|ref|ZP_02362474.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia oklahomensis C6786] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+++ LS+ + R + L + ++ RG A+ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQRGGAVTLVGFGTFEVGKRAARGG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ +T ++I V F+A LK + Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALKDALN 90 >gi|90581254|ref|ZP_01237052.1| putative integration host factor, beta subunit [Vibrio angustum S14] gi|90437625|gb|EAS62818.1| putative integration host factor, beta subunit [Vibrio angustum S14] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K + + + ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKDILENMANTLAEGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++D + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRV 90 >gi|251793493|ref|YP_003008222.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700] gi|247534889|gb|ACS98135.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S +GEA+++ F TF V + +R G Sbjct: 1 MNKTDLIDAIASSAELNKKQAKAALEATLEAITGSLKKGEAVQLIGFGTFKVNARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V F + LK + Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAVK 90 >gi|226946415|ref|YP_002801488.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226721342|gb|ACO80513.1| histone-like bacterial DNA-binding protein, hupB family [Azotobacter vinelandii DJ] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S+S L + +T+ V L I G + + F TF VK++ +R G Sbjct: 1 MNKSELIASVSTHADLDKNTATKVVNALLETITAELKAGHEVGLIGFGTFSVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK+ + Sbjct: 61 RNPQTGKEIEIAAAKTPGFKAGKGLKEAVN 90 >gi|317402986|gb|EFV83525.1| integration host factor beta-subunit [Achromobacter xylosoxidans C54] Length = 119 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 60/106 (56%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+ Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ ++V + ++V FKA L++R+ D + G + S Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV-DLVGGNDEDAQSSGS 105 >gi|163756383|ref|ZP_02163497.1| fumarate hydratase [Kordia algicida OT-1] gi|161323735|gb|EDP95070.1| fumarate hydratase [Kordia algicida OT-1] Length = 101 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 54/93 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + +++L+ +++ + G+S+ + + + + + + +G+ + + F ++ V ++ + Sbjct: 9 STIMNKTELIDAMAADAGISKAAAKKSLESFLGNVEGALKKGDRVSLVGFGSWSVSERAA 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT + ++I ++VV FKA S L K + Sbjct: 69 REGRNPQTGKTIQIAAKKVVKFKAGSDLGKAVN 101 >gi|39997696|ref|NP_953647.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|39984588|gb|AAR35974.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|298506629|gb|ADI85352.1| integration host factor, beta subunit [Geobacter sulfurreducens KN400] Length = 96 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++++ L+RKDS V +F+ I D+ GE ++I F +F V+++G+R Sbjct: 1 MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN ++ VKI ++ FK L++R+ + Sbjct: 61 ARNPKSGAIVKIPAKKTPFFKTGKELRERVNHE 93 >gi|28868957|ref|NP_791576.1| integration host factor subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|66046870|ref|YP_236711.1| integration host factor subunit beta [Pseudomonas syringae pv. syringae B728a] gi|213968715|ref|ZP_03396857.1| integration host factor subunit beta [Pseudomonas syringae pv. tomato T1] gi|237799024|ref|ZP_04587485.1| integration host factor subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|257485841|ref|ZP_05639882.1| integration host factor subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289623737|ref|ZP_06456691.1| integration host factor subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648179|ref|ZP_06479522.1| integration host factor subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|289677166|ref|ZP_06498056.1| integration host factor subunit beta [Pseudomonas syringae pv. syringae FF5] gi|298488022|ref|ZP_07006059.1| Integration host factor beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301381330|ref|ZP_07229748.1| integration host factor subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302061500|ref|ZP_07253041.1| integration host factor subunit beta [Pseudomonas syringae pv. tomato K40] gi|302130033|ref|ZP_07256023.1| integration host factor subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187671|ref|ZP_07264344.1| integration host factor subunit beta [Pseudomonas syringae pv. syringae 642] gi|38372325|sp|Q885T0|IHFB_PSESM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81308021|sp|Q4ZQ99|IHFB_PSEU2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|28852197|gb|AAO55271.1| integration host factor, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|63257577|gb|AAY38673.1| Integration host factor, beta subunit [Pseudomonas syringae pv. syringae B728a] gi|213926648|gb|EEB60201.1| integration host factor subunit beta [Pseudomonas syringae pv. tomato T1] gi|298157301|gb|EFH98384.1| Integration host factor beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323346|gb|EFW79434.1| integration host factor subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320327543|gb|EFW83555.1| integration host factor subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330866104|gb|EGH00813.1| integration host factor subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876622|gb|EGH10771.1| integration host factor subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330877035|gb|EGH11184.1| integration host factor subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330889340|gb|EGH22001.1| integration host factor subunit beta [Pseudomonas syringae pv. mori str. 301020] gi|330897210|gb|EGH28629.1| integration host factor subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] gi|330939638|gb|EGH42944.1| integration host factor subunit beta [Pseudomonas syringae pv. pisi str. 1704B] gi|330964803|gb|EGH65063.1| integration host factor subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] gi|330972339|gb|EGH72405.1| integration host factor subunit beta [Pseudomonas syringae pv. aceris str. M302273PT] gi|330980288|gb|EGH78423.1| integration host factor subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330986660|gb|EGH84763.1| integration host factor subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012930|gb|EGH92986.1| integration host factor subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331016847|gb|EGH96903.1| integration host factor subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331021878|gb|EGI01935.1| integration host factor subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 98 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T Q V +D + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEE 95 >gi|332998852|gb|EGK18447.1| DNA-binding protein HU-alpha [Shigella flexneri K-272] gi|333014312|gb|EGK33666.1| DNA-binding protein HU-alpha [Shigella flexneri K-227] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|295694764|ref|YP_003588002.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] gi|295410366|gb|ADG04858.1| histone family protein DNA-binding protein [Bacillus tusciae DSM 2912] Length = 87 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 50/83 (60%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L+ +++ GL +K++ V ++F+ I ++ GE +++ F TF +++ +R+GRN Q Sbjct: 2 ELIAKVAERSGLKKKEAEAAVNSVFDVIGEALAGGEKVQLVGFGTFEPRRRAARIGRNPQ 61 Query: 69 TNQEVKIDPRRVVVFKASSILKK 91 T +E+ I V FK + LK+ Sbjct: 62 TGEEISIPESVVPAFKPGNKLKE 84 >gi|225076633|ref|ZP_03719832.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens NRL30031/H210] gi|241758592|ref|ZP_04756707.1| integration host factor, alpha subunit [Neisseria flavescens SK114] gi|261379897|ref|ZP_05984470.1| integration host factor, alpha subunit [Neisseria subflava NJ9703] gi|319637854|ref|ZP_07992620.1| integration host factor subunit alpha [Neisseria mucosa C102] gi|224952039|gb|EEG33248.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens NRL30031/H210] gi|241321244|gb|EER57416.1| integration host factor, alpha subunit [Neisseria flavescens SK114] gi|284797599|gb|EFC52946.1| integration host factor, alpha subunit [Neisseria subflava NJ9703] gi|317401009|gb|EFV81664.1| integration host factor subunit alpha [Neisseria mucosa C102] Length = 100 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + +++ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93 >gi|218885604|ref|YP_002434925.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756558|gb|ACL07457.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ + L++ + R + + + D+ + ++ F TF V+ + +R G Sbjct: 1 MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDALAAEGKLTLTGFGTFAVEDRQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+KI +VV F+ LK I Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLKDSIK 90 >gi|114766575|ref|ZP_01445531.1| integration host factor beta subunit [Pelagibaca bermudensis HTCC2601] gi|114541191|gb|EAU44243.1| integration host factor beta subunit [Roseovarius sp. HTCC2601] Length = 93 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 58/92 (63%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I++E L ++D R V T+F EI ++ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLNG 92 >gi|320108132|ref|YP_004183722.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] gi|319926653|gb|ADV83728.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] Length = 107 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++ L+R+D V TLF + + + ++I F +F +Q+ SR+G Sbjct: 1 MTKADLVDKVTDLGDLTRRDGEIIVETLFEGVVSALKADDKVEIRGFGSFRTRQRNSRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V + +RV FK S L+ + Sbjct: 61 RNPKTGERVDVPAKRVPFFKPSKELRDLVN 90 >gi|296157830|ref|ZP_06840664.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|295892076|gb|EFG71860.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKQGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90 >gi|58581804|ref|YP_200820.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426398|gb|AAW75435.1| integration host factor beta subunit [Xanthomonas oryzae pv. oryzae KACC10331] Length = 119 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 17 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 76 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 77 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDTTD 119 >gi|317968906|ref|ZP_07970296.1| DNA-binding protein HU [Synechococcus sp. CB0205] Length = 91 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T Q++KI +RV F A + K R+ Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKLFKDRVQG 91 >gi|222147331|ref|YP_002548288.1| integration host factor subunit beta [Agrobacterium vitis S4] gi|254803526|sp|B9JZH2|IHFB_AGRVS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|221734321|gb|ACM35284.1| integration host factor beta subunit [Agrobacterium vitis S4] Length = 103 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVELRGFGAFSVKNRPSRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V ++ + V FK L++R+ M Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGM 94 >gi|167562417|ref|ZP_02355333.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia oklahomensis EO147] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+++ LS+ + R + L + ++ +G A+ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIARQADLSKSSAARALDALLGGVTNTLQQGGAVTLVGFGTFEVGKRAARGG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ +T ++I V F+A LK + Sbjct: 61 RDPRTGAAIEIRAANVPKFRAGKALKDALN 90 >gi|325661342|ref|ZP_08149968.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472291|gb|EGC75503.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium 4_1_37FAA] Length = 91 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K +S GL++ + V + + I + ++GE + I+ F TF V+++ R+G Sbjct: 1 MNKLELIKEVSGRTGLTQVATKDVVEAVLDVITNQLIKGEKVAIAGFGTFEVRERAERMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q+ +E+ I + V FKA LK ++ Sbjct: 61 RNPQSGEEMLIAASKNVKFKAGKALKDKVN 90 >gi|325579267|ref|ZP_08149223.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392] gi|301155512|emb|CBW14979.1| HU, DNA-binding transcriptional regulator, alpha subunit [Haemophilus parainfluenzae T3T1] gi|325159502|gb|EGC71636.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+ L++K + + I S +GE +++ F TF V ++ +R G Sbjct: 1 MNKTDLIDAIASAAELNKKQAKAALEATLAAITGSLKKGEPVQLIGFGTFKVNKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI +V F + LK I Sbjct: 61 RNPQTGAEIKIAASKVPAFVSGKALKDAIK 90 >gi|42523574|ref|NP_968954.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus HD100] gi|39575780|emb|CAE79947.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus HD100] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV+ ++++ ++ S + I ++ G+ +K+ F TF + +R G Sbjct: 1 MNKAQLVELVAEKTKTTKSQSELILDATLEAIQEALKDGDEVKLVGFGTFSRSSRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + VKI + FK LK + Sbjct: 61 RNPKTGETVKIPSAYIPKFKPGKDLKDALN 90 >gi|237748740|ref|ZP_04579220.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13] gi|229380102|gb|EEO30193.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ + R + + + + S +++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKSADISKAAAARSLDAVIDAVTTSLKNNDSVTLVGFGTFSVGERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V F+A +LK + Sbjct: 61 RNPRTGEVIKIKSAKVPKFRAGKLLKDAVN 90 >gi|254515152|ref|ZP_05127213.1| integration host factor, beta subunit [gamma proteobacterium NOR5-3] gi|219677395|gb|EED33760.1| integration host factor, beta subunit [gamma proteobacterium NOR5-3] Length = 98 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++I+ K+ LS KD V T+ ++ +S G I+I F +F + + R Sbjct: 1 MTKSELIEAIALKQSQLSTKDVELAVKTVIEQMSNSLSSGGRIEIRGFGSFSLHYREPRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T V++ + V FK L+ R+ ++ Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRDRVNLGLQA 96 >gi|212702269|ref|ZP_03310397.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC 29098] gi|212674332|gb|EEB34815.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC 29098] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ + L++ + R + + +S + + + ++ F TF V+ + R G Sbjct: 1 MTKADLVEKIAAKANLTKAAAERALNAFLASVEESLAKDDRLTLTGFGTFVVETRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I ++V F+ +LK + Sbjct: 61 RNPRTGETLTIPACKMVKFRPGKMLKDAL 89 >gi|260878351|ref|ZP_05890706.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] gi|308092754|gb|EFO42449.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034] Length = 86 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 43/84 (51%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 LV+ I++ +S+ + R + + + G+ + + F TF V+ + +R GRN + Sbjct: 1 QLVEQIAENADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGRNPK 60 Query: 69 TNQEVKIDPRRVVVFKASSILKKR 92 T +E++I +V FKA LK Sbjct: 61 TGEEIQIAEAKVPAFKAGKALKDA 84 >gi|262196426|ref|YP_003267635.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] gi|262079773|gb|ACY15742.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] Length = 168 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 52/93 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L++ +S+ L + + V +F+ + + G+ I+I F +F V+Q + G Sbjct: 1 MTKSELIEQVSELLKLPNGKAEQIVNCIFDSMVSALQDGDGIEIRGFGSFTVRQYKAYEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN +T + V + P+R+ FK L++R+ + Sbjct: 61 RNPRTGETVHVAPKRLPFFKVGKDLRERVNRAV 93 >gi|13476997|ref|NP_108567.1| DNA-binding protein HRm [Mesorhizobium loti MAFF303099] gi|260460894|ref|ZP_05809144.1| histone family protein DNA-binding protein [Mesorhizobium opportunistum WSM2075] gi|319784101|ref|YP_004143577.1| histone family protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14027760|dbj|BAB54353.1| DNA-binding protein; HRm [Mesorhizobium loti MAFF303099] gi|259033471|gb|EEW34732.1| histone family protein DNA-binding protein [Mesorhizobium opportunistum WSM2075] gi|317169989|gb|ADV13527.1| histone family protein DNA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 90 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ +S+ D+ V +F+ I +G +++ F F V ++ + G Sbjct: 1 MNKNELVSAVADAASISKGDAQSAVDAVFSVITGELKKGGDVRLVGFGNFTVSKRAASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT EVKI R V F A LK + Sbjct: 61 RNPQTGAEVKIPARTVPKFSAGKGLKDAVN 90 >gi|319405751|emb|CBI79374.1| integration host factor alpha subunit [Bartonella sp. AR 15-3] Length = 103 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 52/100 (52%), Positives = 71/100 (71%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + EIC+S V+GE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLGEICNSLVKGEMVKLSSFATFQVRDKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RVGRN +T E I PRRVV FKA+++LKKRI+D R +K Sbjct: 63 RVGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102 >gi|227499519|ref|ZP_03929626.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098] gi|227218398|gb|EEI83649.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098] Length = 92 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ + + + +S + G+ +++ F TF V+ + +R G Sbjct: 1 MNKSELLINISEKSGLKKSEAEKALNAFLETVTESLIAGDKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92 >gi|167897237|ref|ZP_02484639.1| putative bacterial nucleoid DNA-binding protein [Burkholderia pseudomallei 7894] Length = 90 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ +++K L++ + + V + + I + + +S F TF + + +R G Sbjct: 1 MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + ++I + V FK LK + Sbjct: 61 RNPATGEAIEIAASKAVKFKPGKALKDALN 90 >gi|309796446|ref|ZP_07690854.1| DNA-binding protein HU [Escherichia coli MS 145-7] gi|308119951|gb|EFO57213.1| DNA-binding protein HU [Escherichia coli MS 145-7] Length = 90 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++++ +S+ + V L N + + G + ++ F TFHVK++ +R G Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVKEVLKAGGTVALTGFGTFHVKERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I + FKA LK + Sbjct: 61 RNPQTGENIQIAAANIPGFKAGKGLKDSVN 90 >gi|183598363|ref|ZP_02959856.1| hypothetical protein PROSTU_01755 [Providencia stuartii ATCC 25827] gi|188020539|gb|EDU58579.1| hypothetical protein PROSTU_01755 [Providencia stuartii ATCC 25827] Length = 95 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K V + + D+ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLASQQSHLSAKTVEDAVKEILEHMADTLAGGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|163759320|ref|ZP_02166406.1| histone-like protein [Hoeflea phototrophica DFL-43] gi|162283724|gb|EDQ34009.1| histone-like protein [Hoeflea phototrophica DFL-43] Length = 90 Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+S+ D+T V +F I G +++ F F V ++ + G Sbjct: 1 MNKNELVAAVAEKSGISKGDATSAVEAVFETITGELKNGGDVRLIGFGNFTVSRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT +EV I R V F A LK Sbjct: 61 RNPQTGKEVDIPARNVPKFSAGKGLKDA 88 >gi|23016137|ref|ZP_00055896.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 99 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 3 KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K++T+S+L+ +++ L ++D R VTT+F+EI + RG+ +++ F F VK++ Sbjct: 2 KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T + V +D + V FK L++++ Sbjct: 62 RTGRNPRTGETVSVDGKAVPFFKTGKQLREKLN 94 >gi|15887688|ref|NP_353369.1| integration host factor subunit beta [Agrobacterium tumefaciens str. C58] gi|325291772|ref|YP_004277636.1| integration host factor subunit beta [Agrobacterium sp. H13-3] gi|24418456|sp|Q8UIF9|IHFB_AGRT5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|15155245|gb|AAK86154.1| integration host factor, beta subunit [Agrobacterium tumefaciens str. C58] gi|325059625|gb|ADY63316.1| integration host factor subunit beta [Agrobacterium sp. H13-3] Length = 100 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T + V ++ + V FK L++R+ M + Sbjct: 61 GRNPRTGESVFVEEKWVPFFKTGKELRERLNPGMGDEE 98 >gi|23501064|ref|NP_697191.1| integration host factor subunit beta [Brucella suis 1330] gi|148559718|ref|YP_001258186.1| integration host factor subunit beta [Brucella ovis ATCC 25840] gi|153007510|ref|YP_001368725.1| integration host factor subunit beta [Ochrobactrum anthropi ATCC 49188] gi|161618141|ref|YP_001592028.1| integration host factor subunit beta [Brucella canis ATCC 23365] gi|163842423|ref|YP_001626827.1| integration host factor subunit beta [Brucella suis ATCC 23445] gi|254700962|ref|ZP_05162790.1| integration host factor subunit beta [Brucella suis bv. 5 str. 513] gi|254705332|ref|ZP_05167160.1| integration host factor subunit beta [Brucella suis bv. 3 str. 686] gi|254707154|ref|ZP_05168982.1| integration host factor subunit beta [Brucella pinnipedialis M163/99/10] gi|254709302|ref|ZP_05171113.1| integration host factor subunit beta [Brucella pinnipedialis B2/94] gi|254713275|ref|ZP_05175086.1| integration host factor subunit beta [Brucella ceti M644/93/1] gi|254716372|ref|ZP_05178183.1| integration host factor subunit beta [Brucella ceti M13/05/1] gi|254718369|ref|ZP_05180180.1| integration host factor subunit beta [Brucella sp. 83/13] gi|256030825|ref|ZP_05444439.1| integration host factor subunit beta [Brucella pinnipedialis M292/94/1] gi|256060295|ref|ZP_05450468.1| integration host factor subunit beta [Brucella neotomae 5K33] gi|256158850|ref|ZP_05456707.1| integration host factor subunit beta [Brucella ceti M490/95/1] gi|256254231|ref|ZP_05459767.1| integration host factor subunit beta [Brucella ceti B1/94] gi|256368617|ref|YP_003106123.1| integration host factor beta subunit [Brucella microti CCM 4915] gi|260169729|ref|ZP_05756540.1| integration host factor subunit beta [Brucella sp. F5/99] gi|260567209|ref|ZP_05837679.1| integration host factor subunit beta [Brucella suis bv. 4 str. 40] gi|261218154|ref|ZP_05932435.1| integration host factor subunit beta [Brucella ceti M13/05/1] gi|261221380|ref|ZP_05935661.1| integration host factor subunit beta [Brucella ceti B1/94] gi|261314632|ref|ZP_05953829.1| integration host factor subunit beta [Brucella pinnipedialis M163/99/10] gi|261316811|ref|ZP_05956008.1| integration host factor subunit beta [Brucella pinnipedialis B2/94] gi|261320998|ref|ZP_05960195.1| integration host factor subunit beta [Brucella ceti M644/93/1] gi|261324267|ref|ZP_05963464.1| integration host factor subunit beta [Brucella neotomae 5K33] gi|261751480|ref|ZP_05995189.1| integration host factor subunit beta [Brucella suis bv. 5 str. 513] gi|261756043|ref|ZP_05999752.1| integration host factor subunit beta [Brucella suis bv. 3 str. 686] gi|261759267|ref|ZP_06002976.1| integration host factor subunit beta [Brucella sp. F5/99] gi|265983330|ref|ZP_06096065.1| integration host factor subunit beta [Brucella sp. 83/13] gi|265987880|ref|ZP_06100437.1| integration host factor subunit beta [Brucella pinnipedialis M292/94/1] gi|265997341|ref|ZP_06109898.1| integration host factor subunit beta [Brucella ceti M490/95/1] gi|306839600|ref|ZP_07472404.1| integration host factor, beta subunit [Brucella sp. NF 2653] gi|306844421|ref|ZP_07477011.1| integration host factor, beta subunit [Brucella sp. BO1] gi|38258168|sp|Q8G304|IHFB_BRUSU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918542|sp|A5VN89|IHFB_BRUO2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918556|sp|A6WV92|IHFB_OCHA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045033|sp|A9M798|IHFB_BRUC2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045034|sp|B0CIR1|IHFB_BRUSI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|23346931|gb|AAN29106.1| integration host factor, beta subunit [Brucella suis 1330] gi|148370975|gb|ABQ60954.1| integration host factor, beta subunit [Brucella ovis ATCC 25840] gi|151559398|gb|ABS12896.1| integration host factor, beta subunit [Ochrobactrum anthropi ATCC 49188] gi|161334952|gb|ABX61257.1| integration host factor, beta subunit [Brucella canis ATCC 23365] gi|163673146|gb|ABY37257.1| integration host factor, beta subunit [Brucella suis ATCC 23445] gi|255998775|gb|ACU47174.1| integration host factor beta subunit [Brucella microti CCM 4915] gi|260156727|gb|EEW91807.1| integration host factor subunit beta [Brucella suis bv. 4 str. 40] gi|260919964|gb|EEX86617.1| integration host factor subunit beta [Brucella ceti B1/94] gi|260923243|gb|EEX89811.1| integration host factor subunit beta [Brucella ceti M13/05/1] gi|261293688|gb|EEX97184.1| integration host factor subunit beta [Brucella ceti M644/93/1] gi|261296034|gb|EEX99530.1| integration host factor subunit beta [Brucella pinnipedialis B2/94] gi|261300247|gb|EEY03744.1| integration host factor subunit beta [Brucella neotomae 5K33] gi|261303658|gb|EEY07155.1| integration host factor subunit beta [Brucella pinnipedialis M163/99/10] gi|261739251|gb|EEY27247.1| integration host factor subunit beta [Brucella sp. F5/99] gi|261741233|gb|EEY29159.1| integration host factor subunit beta [Brucella suis bv. 5 str. 513] gi|261745796|gb|EEY33722.1| integration host factor subunit beta [Brucella suis bv. 3 str. 686] gi|262551809|gb|EEZ07799.1| integration host factor subunit beta [Brucella ceti M490/95/1] gi|264660077|gb|EEZ30338.1| integration host factor subunit beta [Brucella pinnipedialis M292/94/1] gi|264661922|gb|EEZ32183.1| integration host factor subunit beta [Brucella sp. 83/13] gi|306275234|gb|EFM56984.1| integration host factor, beta subunit [Brucella sp. BO1] gi|306405298|gb|EFM61573.1| integration host factor, beta subunit [Brucella sp. NF 2653] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V ++ + V FK L+ R+ + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 94 >gi|163747513|ref|ZP_02154863.1| integration host factor subunit beta [Oceanibulbus indolifex HEL-45] gi|161379191|gb|EDQ03610.1| integration host factor subunit beta [Oceanibulbus indolifex HEL-45] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ L ++D R V T+F+EI + RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTVFDEITGAMSRGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V +D + V FK +L+ R+ Sbjct: 61 GRNPRTGETVNVDEKHVPFFKTGKLLRDRLNG 92 >gi|239831002|ref|ZP_04679331.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG 3301] gi|239823269|gb|EEQ94837.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG 3301] Length = 120 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 3 KTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + + Sbjct: 25 KAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPA 84 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R GRN +T + V ++ + V FK L+ R+ + Sbjct: 85 RSGRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 120 >gi|167563627|ref|ZP_02356543.1| integration host factor subunit beta [Burkholderia oklahomensis EO147] gi|167570789|ref|ZP_02363663.1| integration host factor subunit beta [Burkholderia oklahomensis C6786] Length = 107 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ ++V++ + V FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV-DGRAGEPLKNDEPED 105 >gi|90023476|ref|YP_529303.1| nucleoid protein Hbs [Saccharophagus degradans 2-40] gi|89953076|gb|ABD83091.1| bacterial nucleoid protein Hbs [Saccharophagus degradans 2-40] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV++++ LS + + V+ +F+ I ++ R +++ + F +F +++ +R G Sbjct: 1 MRKSDLVEAVANAADLSPRQADDAVSAIFDHITNALARKDSVNLVGFGSFITRERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + I + FK LK ++D Sbjct: 61 RNPQTGAAINIAASVLPAFKPGKKLKDALVD 91 >gi|269468161|gb|EEZ79863.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++I+ GLS+ D+ + + + I + +G+ ++I+ F +F + + +R G Sbjct: 1 MNKTELIEAIASAAGLSKADAGKALNATTDAITGAMAKGDGVQITGFGSFITRARAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I V FKA LK+ + Sbjct: 61 RNPQTGATIQIKASTVAAFKAGKALKEAVNK 91 >gi|332981382|ref|YP_004462823.1| nucleoid protein Hbs [Mahella australiensis 50-1 BON] gi|332699060|gb|AEE96001.1| bacterial nucleoid protein Hbs [Mahella australiensis 50-1 BON] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +++KD+ + + + + ++ V G+ +++ F TF V + +R G Sbjct: 1 MNKAELIAKMAEKGEMTKKDAEKALNAFVDAVTEALVNGDTVQLVGFGTFRVSPRSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ QT +E+ I + VFKA LK + Sbjct: 61 RDPQTQKEIMIPASKAPVFKAGKALKDAVKG 91 >gi|325479553|gb|EGC82649.1| DNA-binding protein HU-beta [Anaerococcus prevotii ACS-065-V-Col13] Length = 92 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + +S + + + ++ + GE +++ F TF V+ + +R G Sbjct: 1 MNKSELLINISEKSGLKKSESEKALNAFLETVTEALIEGEKVQLVGFGTFEVRDRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I + VFKA LK+ + Sbjct: 61 RNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92 >gi|229589172|ref|YP_002871291.1| integration host factor subunit beta [Pseudomonas fluorescens SBW25] gi|259492037|sp|C3K6K2|IHFB_PSEFS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|229361038|emb|CAY47900.1| integration host factor beta-subunit [Pseudomonas fluorescens SBW25] gi|330960539|gb|EGH60799.1| integration host factor subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] Length = 98 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T Q V +D + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEE 95 >gi|149911448|ref|ZP_01900065.1| DNA-binding protein HU-alpha [Moritella sp. PE36] gi|149805479|gb|EDM65486.1| DNA-binding protein HU-alpha [Moritella sp. PE36] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +++ + L++ + + + + I +S EA+++ F TF V ++ +R+G Sbjct: 1 MNKTQLIDAVAAKADLTKVQAKAALEEILSAITESLKEKEAVQLIGFGTFKVSERSARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E++I + F A LK + + + Sbjct: 61 RNPQTGEEIQISAATIPAFVAGKALKDAVKNANK 94 >gi|72382731|ref|YP_292086.1| histone-like DNA-binding protein [Prochlorococcus marinus str. NATL2A] gi|124026452|ref|YP_001015567.1| histone-like DNA-binding protein [Prochlorococcus marinus str. NATL1A] gi|72002581|gb|AAZ58383.1| bacterial nucleoid protein Hbs [Prochlorococcus marinus str. NATL2A] gi|123961520|gb|ABM76303.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. NATL1A] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I +RV F A + K R+ Sbjct: 61 LNPKTGEKIAIPAKRVPAFTAGKLFKDRVQG 91 >gi|148259288|ref|YP_001233415.1| integration host factor, alpha subunit [Acidiphilium cryptum JF-5] gi|326402443|ref|YP_004282524.1| integration host factor alpha subunit [Acidiphilium multivorum AIU301] gi|146400969|gb|ABQ29496.1| integration host factor, alpha subunit [Acidiphilium cryptum JF-5] gi|325049304|dbj|BAJ79642.1| integration host factor alpha subunit [Acidiphilium multivorum AIU301] Length = 104 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+TR+ L +SI GLSR +S + + + + + GE+IKIS F TF V+QKG Sbjct: 1 MS-TLTRAGLAESIYAAVGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKG 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+GRN +T +EV I PRRV+VF+ S IL+ + Sbjct: 60 RRIGRNPKTGREVPILPRRVLVFRPSQILRDAV 92 >gi|296314009|ref|ZP_06863950.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] gi|296839379|gb|EFH23317.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E L+++D+ FV + + + G+ + + F +FH Q R G Sbjct: 1 MNKSELIQAIADEAELNKRDAAEFVDAFVSVVTQTLKDGKDVTLVGFGSFHAAQSAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I R+ F A LK + Sbjct: 61 RNPKTGEPLIIAARKTPKFHAGKALKDAVN 90 >gi|219681418|ref|YP_002467803.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471092|ref|ZP_05635091.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624261|gb|ACL30416.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 92 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ISK+ LS+ + + T + I DS +GE+++I F TF V + SR G Sbjct: 1 MNKTQLINVISKKSNLSKTQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V F + LK I Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAIKQ 91 >gi|153952810|ref|YP_001393575.1| Hup [Clostridium kluyveri DSM 555] gi|219853475|ref|YP_002470597.1| hypothetical protein CKR_0132 [Clostridium kluyveri NBRC 12016] gi|146345691|gb|EDK32227.1| Hup [Clostridium kluyveri DSM 555] gi|219567199|dbj|BAH05183.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+++ L++KD+ + + ++ +GE +++ F TF +++ +RVG Sbjct: 1 MNKSELIVGIAEKSKLTKKDAEAALKGFIESVEETLEKGEKVQLVGFGTFETRKRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I V VFKA + ++ Sbjct: 61 RNPRTKEVINIPESTVPVFKAGKEFRDKVNK 91 >gi|15677102|ref|NP_274254.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58] gi|121634923|ref|YP_975168.1| putative DNA-binding protein [Neisseria meningitidis FAM18] gi|161870073|ref|YP_001599243.1| DNA-binding protein [Neisseria meningitidis 053442] gi|218768232|ref|YP_002342744.1| putative DNA-binding protein [Neisseria meningitidis Z2491] gi|254805009|ref|YP_003083230.1| DNA-binding protein [Neisseria meningitidis alpha14] gi|304387508|ref|ZP_07369697.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|54036950|sp|P64389|DBHB_NEIMB RecName: Full=DNA-binding protein HU-beta gi|54041019|sp|P64388|DBHB_NEIMA RecName: Full=DNA-binding protein HU-beta gi|7226469|gb|AAF41611.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58] gi|120866629|emb|CAM10380.1| putative DNA-binding protein [Neisseria meningitidis FAM18] gi|121052240|emb|CAM08565.1| putative DNA-binding protein [Neisseria meningitidis Z2491] gi|161595626|gb|ABX73286.1| DNA-binding protein [Neisseria meningitidis 053442] gi|254668551|emb|CBA06006.1| DNA-binding protein [Neisseria meningitidis alpha14] gi|254669519|emb|CBA03455.1| DNA-binding protein HU-beta [Neisseria meningitidis alpha153] gi|261392508|emb|CAX50059.1| DNA-binding protein HU [Neisseria meningitidis 8013] gi|304338395|gb|EFM04516.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|308389323|gb|ADO31643.1| putative DNA-binding protein [Neisseria meningitidis alpha710] gi|316985087|gb|EFV64040.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76] gi|319410479|emb|CBY90840.1| DNA-binding protein HU-A [Neisseria meningitidis WUE 2594] gi|325128364|gb|EGC51248.1| DNA-binding protein HU-beta [Neisseria meningitidis N1568] gi|325132586|gb|EGC55279.1| DNA-binding protein HU-beta [Neisseria meningitidis M6190] gi|325134523|gb|EGC57168.1| DNA-binding protein HU-beta [Neisseria meningitidis M13399] gi|325136284|gb|EGC58892.1| DNA-binding protein HU-beta [Neisseria meningitidis M0579] gi|325138359|gb|EGC60928.1| DNA-binding protein HU-beta [Neisseria meningitidis ES14902] gi|325140540|gb|EGC63061.1| DNA-binding protein HU-beta [Neisseria meningitidis CU385] gi|325144626|gb|EGC66925.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240013] gi|325198363|gb|ADY93819.1| DNA-binding protein HU-beta [Neisseria meningitidis G2136] gi|325200140|gb|ADY95595.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76] gi|325202076|gb|ADY97530.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240149] gi|325204214|gb|ADY99667.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240355] gi|325205994|gb|ADZ01447.1| DNA-binding protein HU-beta [Neisseria meningitidis M04-240196] gi|325208170|gb|ADZ03622.1| DNA-binding protein HU-beta [Neisseria meningitidis NZ-05/33] Length = 89 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E +S+ + + + N + + +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 89 >gi|39998222|ref|NP_954173.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|39985168|gb|AAR36523.1| DNA-binding protein HU [Geobacter sulfurreducens PCA] gi|298507158|gb|ADI85881.1| histone-like protein [Geobacter sulfurreducens KN400] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 52/94 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K L++ + + V + + + D+ +G+ + + F +F V + +R G Sbjct: 1 MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI +V F+ LK + + Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVAGKKK 94 >gi|56552018|ref|YP_162857.1| integration host factor subunit alpha [Zymomonas mobilis subsp. mobilis ZM4] gi|241761906|ref|ZP_04759991.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752446|ref|YP_003225339.1| integration host factor, subunit alpha [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|5834289|gb|AAD53893.1|AF176314_3 HimA [Zymomonas mobilis subsp. mobilis ZM4] gi|56543592|gb|AAV89746.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241373586|gb|EER63158.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551809|gb|ACV74755.1| integration host factor, alpha subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 113 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 60/94 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+TR+D+ + E GLSR DS + + + I D+ +GE +KIS F +F ++ K R Sbjct: 19 PTLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNER 78 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 VGRN +T EV I PRRV+ F+AS ++++RI+ Sbjct: 79 VGRNPKTGIEVPIAPRRVLTFRASQLMRQRIIKG 112 >gi|218134789|ref|ZP_03463593.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC 43243] gi|217990174|gb|EEC56185.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC 43243] Length = 126 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++S++ L++KDS + + + + + + E I++ F TF V ++ +R G Sbjct: 36 MNKTELVAAMSEKSELTKKDSEKALKAFMDVVAEELKKDEKIQLVGFGTFEVAKRAARTG 95 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT + +KI + FKA LK + Sbjct: 96 KNPQTGKAIKIPATKAPKFKAGKALKDTVNK 126 >gi|160898320|ref|YP_001563902.1| histone family protein DNA-binding protein [Delftia acidovorans SPH-1] gi|160363904|gb|ABX35517.1| histone family protein DNA-binding protein [Delftia acidovorans SPH-1] Length = 90 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALDSTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V F+ LK + Sbjct: 61 RNPRTGETIKIKAAKVPKFRPGKALKDALN 90 >gi|260220853|emb|CBA28834.1| Integration host factor subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 103 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV+ ++ L+ +D+ V + + + D+ VRG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVEELANRFSQLTHRDAEFAVKAILDAMNDALVRGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V I +RV FK L++ + Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAV 90 >gi|212635294|ref|YP_002311819.1| integration host factor subunit beta [Shewanella piezotolerans WP3] gi|212556778|gb|ACJ29232.1| Integration host factor, beta subunit [Shewanella piezotolerans WP3] Length = 113 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ D+ G+ I+I F +F + + R Sbjct: 19 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMADTLEGGDRIEIRGFGSFSLHYRAPRT 78 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK L++R+ Sbjct: 79 GRNPKTGTSVDLEGKYVPHFKPGKELRERV 108 >gi|209965767|ref|YP_002298682.1| integration host factor, beta subunit [Rhodospirillum centenum SW] gi|226709803|sp|B6IUP4|IHFB_RHOCS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|209959233|gb|ACI99869.1| integration host factor, beta subunit [Rhodospirillum centenum SW] Length = 93 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ L ++D + VTT+F+EI D+ RG+ +++ F F VK++ +R+ Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + + FK L++R+ D Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93 >gi|123969052|ref|YP_001009910.1| histone-like DNA-binding protein [Prochlorococcus marinus str. AS9601] gi|126696845|ref|YP_001091731.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9301] gi|157413883|ref|YP_001484749.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9215] gi|254526156|ref|ZP_05138208.1| bacterial nucleoid DNA-binding protein [Prochlorococcus marinus str. MIT 9202] gi|91070374|gb|ABE11288.1| bacterial histone-like DNA-binding protein [uncultured Prochlorococcus marinus clone HF10-88H9] gi|123199162|gb|ABM70803.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. AS9601] gi|126543888|gb|ABO18130.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9301] gi|157388458|gb|ABV51163.1| Histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9215] gi|221537580|gb|EEE40033.1| bacterial nucleoid DNA-binding protein [Prochlorococcus marinus str. MIT 9202] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + + F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIETIVDSVVEGKKVSLLGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I +RV F A + K R+ Sbjct: 61 LNPKTGEKIAIPAKRVPTFSAGKLFKDRVQG 91 >gi|330808295|ref|YP_004352757.1| transcription factor, unclassified [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376403|gb|AEA67753.1| putative Transcription factor, unclassified [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 98 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T Q V +D + V FK L+ R+ ++ Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEE 93 >gi|323498284|ref|ZP_08103286.1| integration host factor subunit beta [Vibrio sinaloensis DSM 21326] gi|323316712|gb|EGA69721.1| integration host factor subunit beta [Vibrio sinaloensis DSM 21326] Length = 93 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHFREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|110681046|ref|YP_684053.1| integration host factor subunit beta [Roseobacter denitrificans OCh 114] gi|122972521|sp|Q161H6|IHFB_ROSDO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|109457162|gb|ABG33367.1| integration host factor, beta subunit [Roseobacter denitrificans OCh 114] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ + RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTGAMARGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92 >gi|91783523|ref|YP_558729.1| nucleoid protein Hbs [Burkholderia xenovorans LB400] gi|186475779|ref|YP_001857249.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|91687477|gb|ABE30677.1| bacterial nucleoid protein Hbs [Burkholderia xenovorans LB400] gi|184192238|gb|ACC70203.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 90 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQADISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90 >gi|15896458|ref|NP_349807.1| DNA binding protein HU [Clostridium acetobutylicum ATCC 824] gi|15026283|gb|AAK81147.1|AE007817_1 DNA binding protein HU [Clostridium acetobutylicum ATCC 824] gi|325510616|gb|ADZ22252.1| DNA binding protein HU [Clostridium acetobutylicum EA 2018] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ SIS++ L++KD+ + + ++ + E +++ F TF +++ R G Sbjct: 1 MNKAELITSISEKSKLTKKDAEVALKAFIESVEETLEKHEKVQLVGFGTFETRERAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ +E+ I V VFKA K+R+ Sbjct: 61 RNPRSKEEIVIPASTVPVFKAGKEFKERVNK 91 >gi|78358253|ref|YP_389702.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220658|gb|ABB40007.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 91 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK++++++ LS+ ++ V T F+ + ++ V G+ ++I F +F VK+ VG Sbjct: 1 MNKSELVKTLAEDYNLSQDEAVAVVNTFFDSVREALVAGDRVEIRGFGSFKVKEYKGYVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T VK+ P+R+ VF+A +K+ + Sbjct: 61 RNPKTGDSVKVSPKRLPVFRAGKEMKELVN 90 >gi|329847169|ref|ZP_08262197.1| integration host factor, beta subunit [Asticcacaulis biprosthecum C19] gi|328842232|gb|EGF91801.1| integration host factor, beta subunit [Asticcacaulis biprosthecum C19] Length = 99 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ E L++KD R V + + + +G +++ F V+ + +R Sbjct: 1 MLKSELIERLASEYPHLTQKDVERAVNLILESMISTLEKGGRVELRGFGALSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + + V FK+ L++R+ Sbjct: 61 GRNPRTGEAVNVPAKHVPFFKSGKELRERLN 91 >gi|294668835|ref|ZP_06733928.1| DNA-binding protein HU-beta [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309352|gb|EFE50595.1| DNA-binding protein HU-beta [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 89 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++E +S+ + + + + N I ++ +G+ + + F +F+V ++ R G Sbjct: 1 MNKSELIEAMAQEADISKAAAAKALDGMVNAITEALKKGDTVTLVGFGSFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKSLKDAL 89 >gi|119386494|ref|YP_917549.1| integration host factor subunit beta [Paracoccus denitrificans PD1222] gi|166918557|sp|A1B8K9|IHFB_PARDP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119377089|gb|ABL71853.1| integration host factor, beta subunit [Paracoccus denitrificans PD1222] Length = 95 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ IS+E L ++D R V T+F EI D+ RG+ +++ F F VK++ +R Sbjct: 1 MIRSELIQKISEENPHLFQRDVERIVNTVFEEIIDAMARGDRVELRGFGAFSVKKRDARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V +D + V FK +L++R+ Sbjct: 61 GRNPRTGETVSVDEKHVPFFKTGKLLRERLNG 92 >gi|310815217|ref|YP_003963181.1| integration host factor subunit beta [Ketogulonicigenium vulgare Y25] gi|308753952|gb|ADO41881.1| integration host factor subunit beta [Ketogulonicigenium vulgare Y25] Length = 93 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L +D V T+F+EI ++ +G +++ F F VK + SR Sbjct: 1 MIRSELIQKIADENPHLYHRDVENIVNTIFDEITEALAKGNRVELRGFGAFSVKHRDSRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDPVDVEEKSVPFFKTGKLLRDRLNG 92 >gi|212633423|ref|YP_002309948.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3] gi|212554907|gb|ACJ27361.1| Histone-like bacterial DNA-binding protein [Shewanella piezotolerans WP3] Length = 90 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ GE I I F +F ++ +R G Sbjct: 1 MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90 >gi|85374549|ref|YP_458611.1| integration host factor subunit alpha [Erythrobacter litoralis HTCC2594] gi|123099506|sp|Q2N927|IHFA_ERYLH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|84787632|gb|ABC63814.1| integration host factor alpha-subunit [Erythrobacter litoralis HTCC2594] Length = 100 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 64/99 (64%), Gaps = 3/99 (3%) Query: 1 MSK---TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 MS+ T+TR+DL ++I+++ G SR +S V + +C + +GE +KIS F +F ++ Sbjct: 1 MSRSVGTLTRADLAEAINRKMGFSRAESLDMVEAILEHMCGALRKGENVKISGFGSFVLR 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 K R+GRN +T EV I PRRV+ F+AS +L++RI Sbjct: 61 DKKERIGRNPKTGVEVPITPRRVMTFRASQLLRERIAKG 99 >gi|71906916|ref|YP_284503.1| integration host factor, beta subunit [Dechloromonas aromatica RCB] gi|123733294|sp|Q47GJ8|IHFB_DECAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|71846537|gb|AAZ46033.1| Integration host factor, beta subunit [Dechloromonas aromatica RCB] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + ++ VRG+ I+I F +F + + RV Sbjct: 1 MTKSELIAQLAERFPQLVAKDADFAVKMILDAMSEALVRGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN ++ ++V + + V FKA L++R+ + Sbjct: 61 GRNPKSGEKVSVPAKWVPHFKAGKELRERVDQAI 94 >gi|330959797|gb|EGH60057.1| putative DNA-binding protein HU [Pseudomonas syringae pv. maculicola str. ES4326] Length = 90 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V +++++ GL++ D+ R V + I D+ +G+A+ F F VKQ R G Sbjct: 1 MNKGEFVDAVAEKAGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + I + F A LK + Sbjct: 61 RNPSTGASITIAAAKKPHFAAGKSLKDALA 90 >gi|15676627|ref|NP_273771.1| integration host factor, alpha subunit [Neisseria meningitidis MC58] gi|121634526|ref|YP_974771.1| putative integration host factor alpha-subunit [Neisseria meningitidis FAM18] gi|161869670|ref|YP_001598837.1| integration host factor subunit alpha [Neisseria meningitidis 053442] gi|218767850|ref|YP_002342362.1| integration host factor subunit alpha [Neisseria meningitidis Z2491] gi|254804610|ref|YP_003082831.1| integration host factor alpha-subunit [Neisseria meningitidis alpha14] gi|304387969|ref|ZP_07370141.1| integration host factor [Neisseria meningitidis ATCC 13091] gi|54037413|sp|P64393|IHFA_NEIMB RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|54041368|sp|P64392|IHFA_NEIMA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|166918511|sp|A1KSZ1|IHFA_NEIMF RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044703|sp|A9M383|IHFA_NEIM0 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|7225956|gb|AAF41142.1| integration host factor, alpha subunit [Neisseria meningitidis MC58] gi|120866232|emb|CAM09972.1| putative integration host factor alpha-subunit [Neisseria meningitidis FAM18] gi|121051858|emb|CAM08164.1| putative integration host factor alpha-subunit [Neisseria meningitidis Z2491] gi|161595223|gb|ABX72883.1| integration host factor alpha-subunit [Neisseria meningitidis 053442] gi|254668152|emb|CBA04795.1| integration host factor alpha-subunit [Neisseria meningitidis alpha14] gi|254669798|emb|CBA04109.1| integration host factor alpha-subunit [Neisseria meningitidis alpha153] gi|261392903|emb|CAX50484.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria meningitidis 8013] gi|304337968|gb|EFM04106.1| integration host factor [Neisseria meningitidis ATCC 13091] gi|308388919|gb|ADO31239.1| putative integration host factor alpha-subunit [Neisseria meningitidis alpha710] gi|316983711|gb|EFV62692.1| integration host factor, alpha subunit [Neisseria meningitidis H44/76] gi|319410097|emb|CBY90433.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria meningitidis WUE 2594] gi|325127847|gb|EGC50754.1| integration host factor, alpha subunit [Neisseria meningitidis N1568] gi|325129888|gb|EGC52691.1| integration host factor, alpha subunit [Neisseria meningitidis OX99.30304] gi|325131817|gb|EGC54517.1| integration host factor, alpha subunit [Neisseria meningitidis M6190] gi|325133756|gb|EGC56412.1| integration host factor, alpha subunit [Neisseria meningitidis M13399] gi|325136047|gb|EGC58657.1| integration host factor, alpha subunit [Neisseria meningitidis M0579] gi|325137867|gb|EGC60442.1| integration host factor, alpha subunit [Neisseria meningitidis ES14902] gi|325140115|gb|EGC62644.1| integration host factor, alpha subunit [Neisseria meningitidis CU385] gi|325144067|gb|EGC66375.1| integration host factor, alpha subunit [Neisseria meningitidis M01-240013] gi|325197949|gb|ADY93405.1| integration host factor, alpha subunit [Neisseria meningitidis G2136] gi|325200586|gb|ADY96041.1| integration host factor, alpha subunit [Neisseria meningitidis H44/76] gi|325202474|gb|ADY97928.1| integration host factor, alpha subunit [Neisseria meningitidis M01-240149] gi|325203816|gb|ADY99269.1| integration host factor, alpha subunit [Neisseria meningitidis M01-240355] gi|325206428|gb|ADZ01881.1| integration host factor, alpha subunit [Neisseria meningitidis M04-240196] gi|325207774|gb|ADZ03226.1| integration host factor, alpha subunit [Neisseria meningitidis NZ-05/33] Length = 100 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + +++ D+ V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKSMVE 93 >gi|303231969|ref|ZP_07318677.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6] gi|302513398|gb|EFL55432.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6] Length = 99 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 54/99 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN Q + I + FKA LK+++ ++ Sbjct: 61 RNPQNGDTITIKASKSPAFKAGKGLKEQVNAAPAKKRKK 99 >gi|254488430|ref|ZP_05101635.1| integration host factor, beta subunit [Roseobacter sp. GAI101] gi|214045299|gb|EEB85937.1| integration host factor, beta subunit [Roseobacter sp. GAI101] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ L ++D R V T+F EI + G+ +++ F F VK++ SRV Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITSAMSAGDRVELRGFGAFSVKKRDSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK +L+ R+ + Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGN 93 >gi|56695706|ref|YP_166057.1| integration host factor subunit beta [Ruegeria pomeroyi DSS-3] gi|81676380|sp|Q5LV98|IHFB_SILPO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|56677443|gb|AAV94109.1| integration host factor, beta subunit [Ruegeria pomeroyi DSS-3] Length = 94 Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ D+ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDTVHVEEKHVPFFKTGKLLRDRLNG 92 >gi|225626692|ref|ZP_03784731.1| integration host factor, beta subunit [Brucella ceti str. Cudo] gi|306842560|ref|ZP_07475211.1| integration host factor, beta subunit [Brucella sp. BO2] gi|225618349|gb|EEH15392.1| integration host factor, beta subunit [Brucella ceti str. Cudo] gi|306287416|gb|EFM58896.1| integration host factor, beta subunit [Brucella sp. BO2] Length = 117 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + Sbjct: 21 SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +R GRN +T + V ++ + V FK L+ R+ + Sbjct: 81 ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 117 >gi|146344069|ref|YP_001201925.1| putative DNA-binding protein HU [Pseudomonas fluorescens SBW25] gi|146187881|emb|CAM96210.1| putative DNA-binding protein Hu [Pseudomonas fluorescens SBW25] Length = 92 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+ V +++++ GL++ D+ R V + I D+ +G+A+ F F VKQ R G Sbjct: 3 LNKSEFVDAVAEKSGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + I + F A LK I Sbjct: 63 RNPSTGAPITIAAAKKPHFAAGKSLKDAIA 92 >gi|157963543|ref|YP_001503577.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] gi|157848543|gb|ABV89042.1| histone family protein DNA-binding protein [Shewanella pealeana ATCC 700345] Length = 90 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ G+ I I F +F Q+ +R G Sbjct: 1 MNKTELVAKMAESAELTKAEAARALKSFEETVAEAMKNGDKISIVGFGSFETTQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90 >gi|90406951|ref|ZP_01215142.1| integration host factor alpha subunit [Psychromonas sp. CNPT3] gi|90311993|gb|EAS40087.1| integration host factor alpha subunit [Psychromonas sp. CNPT3] Length = 102 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/95 (36%), Positives = 58/95 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +S GLS++++ FV + F EI + GEA+KIS F F +K KG R Sbjct: 2 ALTKAEISIHLSDTIGLSKREAKEFVESFFEEIKATLESGEAVKISGFGGFELKDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+A LK+ + ++ Sbjct: 62 GRNPKTGEDIPIAARRVVTFRAGQKLKELVETNLP 96 >gi|197284610|ref|YP_002150482.1| integration host factor subunit beta [Proteus mirabilis HI4320] gi|227356793|ref|ZP_03841178.1| integration host factor beta-subunit [Proteus mirabilis ATCC 29906] gi|226709798|sp|B4ET28|IHFB_PROMH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|194682097|emb|CAR41673.1| integration host factor beta-subunit [Proteus mirabilis HI4320] gi|227163083|gb|EEI48018.1| integration host factor beta-subunit [Proteus mirabilis ATCC 29906] Length = 95 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + LS K V + + + D+ GE I++ F +F + + R Sbjct: 1 MTKSELIERLAGLQSHLSAKTVEEAVKEMLDHMADTLADGERIEVRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|126701120|ref|YP_001090017.1| DNA-binding protein HU [Clostridium difficile 630] gi|254977121|ref|ZP_05273593.1| DNA-binding protein HU [Clostridium difficile QCD-66c26] gi|255094450|ref|ZP_05323928.1| DNA-binding protein HU [Clostridium difficile CIP 107932] gi|255102706|ref|ZP_05331683.1| DNA-binding protein HU [Clostridium difficile QCD-63q42] gi|255308527|ref|ZP_05352698.1| DNA-binding protein HU [Clostridium difficile ATCC 43255] gi|255316201|ref|ZP_05357784.1| DNA-binding protein HU [Clostridium difficile QCD-76w55] gi|255518863|ref|ZP_05386539.1| DNA-binding protein HU [Clostridium difficile QCD-97b34] gi|255652042|ref|ZP_05398944.1| DNA-binding protein HU [Clostridium difficile QCD-37x79] gi|255657453|ref|ZP_05402862.1| DNA-binding protein HU [Clostridium difficile QCD-23m63] gi|260685016|ref|YP_003216301.1| DNA-binding protein HU [Clostridium difficile CD196] gi|260688674|ref|YP_003219808.1| DNA-binding protein HU [Clostridium difficile R20291] gi|296449048|ref|ZP_06890838.1| DNA-binding protein HU [Clostridium difficile NAP08] gi|296879871|ref|ZP_06903844.1| DNA-binding protein HU [Clostridium difficile NAP07] gi|115252557|emb|CAJ70400.1| Non-specific DNA-binding protein HBsu; signal recognition particle-like (SRP) component [Clostridium difficile] gi|260211179|emb|CBA66647.1| DNA-binding protein HU [Clostridium difficile CD196] gi|260214691|emb|CBE07338.1| DNA-binding protein HU [Clostridium difficile R20291] gi|296262141|gb|EFH08946.1| DNA-binding protein HU [Clostridium difficile NAP08] gi|296429160|gb|EFH15034.1| DNA-binding protein HU [Clostridium difficile NAP07] Length = 92 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ GL++K++ + + + D+ V E +++ F TF +++ +R G Sbjct: 1 MNKAELVSKMAEKSGLTKKEAEAALNAFMSSVQDALVNNEKVQLVGFGTFETRERAARQG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + ++ + I + VFKA LK I Sbjct: 61 RNPRDPEQVIDIPASKAPVFKAGKGLKDIING 92 >gi|312143872|ref|YP_003995318.1| histone family protein DNA-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311904523|gb|ADQ14964.1| histone family protein DNA-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 99 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 56/97 (57%), Gaps = 8/97 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--------EAIKISSFATFHV 56 +T+++L+ ++++ G+++KD+ + + + I + + +++ F TF V Sbjct: 1 MTKNELIDAVAENTGITKKDTGEVINNMIDTIMNHLRAEAKKPEDDRDNVQLIGFGTFEV 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + + +R GRN QTN+E++I R+V VF++ K+ + Sbjct: 61 RDRSARKGRNPQTNEEIQIPARKVPVFRSGKSFKETV 97 >gi|71278799|ref|YP_269056.1| integration host factor subunit beta [Colwellia psychrerythraea 34H] gi|123761027|sp|Q482G2|IHFB_COLP3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|71144539|gb|AAZ25012.1| integration host factor, beta subunit [Colwellia psychrerythraea 34H] Length = 95 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + LS K+ + + + + S +GE I+I F +F + + RV Sbjct: 1 MTKSELIEKLADKLSHLSAKEVEKSIKEILELMAQSLSKGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V++ + V FK L++R+ Sbjct: 61 GRNPKTGESVELSGKYVPHFKPGKELRERVN 91 >gi|317152780|ref|YP_004120828.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316943031|gb|ADU62082.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 90 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ G S+ + + + + I G + ++ F TF V ++ +R G Sbjct: 1 MTKAELVAKIAEKNGTSKAQAEASMNAILDVIQGELAAGNKLTLTGFGTFSVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +V FK +LK+ + Sbjct: 61 RNPRTGKEIKIPACKVAQFKPGKVLKEAVK 90 >gi|319898983|ref|YP_004159076.1| integration host factor alpha subunit [Bartonella clarridgeiae 73] gi|319402947|emb|CBI76498.1| integration host factor alpha subunit [Bartonella clarridgeiae 73] Length = 103 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 52/100 (52%), Positives = 72/100 (72%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL ++ ++ GLS +S V + NEIC+S V+GE +K+SSFATF V+ K Sbjct: 3 SKTVTRADLAGAVCRKVGLSHTESADLVELVLNEICNSLVKGEMVKLSSFATFQVRNKSE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T E I PRRVV FKA+++LKKRI+D R +K Sbjct: 63 RIGRNPKTGVEASIPPRRVVTFKAANVLKKRILDTHRAKK 102 >gi|118497645|ref|YP_898695.1| DNA-binding protein HU-beta [Francisella tularensis subsp. novicida U112] gi|208779447|ref|ZP_03246793.1| DNA-binding protein HU-beta [Francisella novicida FTG] gi|254373011|ref|ZP_04988500.1| hypothetical protein FTCG_00584 [Francisella tularensis subsp. novicida GA99-3549] gi|118423551|gb|ABK89941.1| DNA-binding protein HU-beta [Francisella novicida U112] gi|151570738|gb|EDN36392.1| hypothetical protein FTCG_00584 [Francisella novicida GA99-3549] gi|208745247|gb|EDZ91545.1| DNA-binding protein HU-beta [Francisella novicida FTG] gi|332678353|gb|AEE87482.1| DNA-binding protein HU-beta [Francisella cf. novicida Fx1] Length = 90 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FKA LK + Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAVK 90 >gi|62195080|ref|YP_220427.1| hypothetical protein p49879_2p18 [Leptospirillum ferrooxidans] gi|61105596|gb|AAX38515.1| ORF98 [Leptospirillum ferrooxidans] Length = 98 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+S LS+KD + I S +GE + + F TF +K +R G Sbjct: 1 MNKTELVASVSDSSNLSKKDVQAVLDGFLAAIEHSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I R F A L+ I Sbjct: 61 RNPRTGEALEIPARTSPKFSAGKSLRDAI 89 >gi|146306886|ref|YP_001187351.1| integration host factor subunit beta [Pseudomonas mendocina ymp] gi|166975881|sp|A4XTF3|IHFB_PSEMY RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|145575087|gb|ABP84619.1| integration host factor, beta subunit [Pseudomonas mendocina ymp] Length = 95 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS KD + T+ ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T Q V++D + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNED 93 >gi|84623708|ref|YP_451080.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166712377|ref|ZP_02243584.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] gi|188576639|ref|YP_001913568.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|123739120|sp|Q2P3S1|IHFB_XANOM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709819|sp|B2SLH4|IHFB_XANOP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|84367648|dbj|BAE68806.1| integration host factor beta subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521091|gb|ACD59036.1| integration host factor, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 103 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDTTD 103 >gi|88859272|ref|ZP_01133912.1| putative integration host factor (iHF), beta subunit, site-specific recombination [Pseudoalteromonas tunicata D2] gi|88818289|gb|EAR28104.1| putative integration host factor (iHF), beta subunit, site-specific recombination [Pseudoalteromonas tunicata D2] Length = 96 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++++ LS KD V + ++ DS + I+I F +F + + RV Sbjct: 1 MTKSELIEQLAEQHPQLSAKDVENSVKEILEQMADSLSESQRIEIRGFGSFSLHFRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T V++ + V FK L+ R+ + + Sbjct: 61 GRNPKTGDTVELLGKYVPHFKPGKELRDRVNESLNN 96 >gi|119897364|ref|YP_932577.1| integration host factor subunit beta [Azoarcus sp. BH72] gi|166918539|sp|A1K4D5|IHFB_AZOSB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119669777|emb|CAL93690.1| probable integration host factor, beta-subunit [Azoarcus sp. BH72] Length = 94 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ F L KD+ V + + + D+ RG+ I+I F +F + + RV Sbjct: 1 MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + + V FKA L++R+ Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKELRERV 90 >gi|146279885|ref|YP_001170043.1| integration host factor subunit beta [Rhodobacter sphaeroides ATCC 17025] gi|145558126|gb|ABP72738.1| hypothetical protein Rsph17025_3883 [Rhodobacter sphaeroides ATCC 17025] Length = 93 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L+++ R V T+F EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKSRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91 >gi|325294223|ref|YP_004280737.1| histone family protein DNA-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064671|gb|ADY72678.1| histone family protein DNA-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 93 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 53/88 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SDLV +I+++ G+ +KD+ + + + ++ +GE ++I F TF +K++ RV Sbjct: 1 MTKSDLVAAIAEKAGIRKKDAEAALNGFIDVVTEALAKGEKVEIRGFGTFLMKERAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T ++V++ + FK LK+ Sbjct: 61 RNPRTGEKVEVPAKLSPAFKPGKDLKEA 88 >gi|239814882|ref|YP_002943792.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|239801459|gb|ACS18526.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] Length = 123 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 57/103 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + ++ GL++++S V F+ I +S + G +KIS F F ++ K Sbjct: 13 TPALTKAHLADLLFEQIGLNKRESKDMVEAFFDLIANSLIEGTDVKISGFGNFQIRVKAP 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R GRN +T + + I RRV F AS+ LK++I + ++ Sbjct: 73 RPGRNPRTGEAIPIGERRVATFHASAKLKEQIHGSIEQSGTSE 115 >gi|255066467|ref|ZP_05318322.1| integration host factor, alpha subunit [Neisseria sicca ATCC 29256] gi|261365588|ref|ZP_05978471.1| integration host factor, alpha subunit [Neisseria mucosa ATCC 25996] gi|261377866|ref|ZP_05982439.1| integration host factor, alpha subunit [Neisseria cinerea ATCC 14685] gi|261400410|ref|ZP_05986535.1| integration host factor, alpha subunit [Neisseria lactamica ATCC 23970] gi|296314669|ref|ZP_06864610.1| integration host factor, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|298369375|ref|ZP_06980693.1| integration host factor, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|313668794|ref|YP_004049078.1| integration host factor alpha-subunit [Neisseria lactamica ST-640] gi|255049347|gb|EET44811.1| integration host factor, alpha subunit [Neisseria sicca ATCC 29256] gi|269145715|gb|EEZ72133.1| integration host factor, alpha subunit [Neisseria cinerea ATCC 14685] gi|269209855|gb|EEZ76310.1| integration host factor, alpha subunit [Neisseria lactamica ATCC 23970] gi|288565913|gb|EFC87473.1| integration host factor, alpha subunit [Neisseria mucosa ATCC 25996] gi|296838496|gb|EFH22434.1| integration host factor, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|298283378|gb|EFI24865.1| integration host factor, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|309378771|emb|CBX22597.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006256|emb|CBN87718.1| putative integration host factor alpha-subunit [Neisseria lactamica 020-06] Length = 100 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + +++ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93 >gi|33861877|ref|NP_893438.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|78779803|ref|YP_397915.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9312] gi|123966715|ref|YP_001011796.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9515] gi|33640245|emb|CAE19780.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|78713302|gb|ABB50479.1| bacterial nucleoid protein Hbs [Prochlorococcus marinus str. MIT 9312] gi|123201081|gb|ABM72689.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9515] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I +RV F A + K R+ Sbjct: 61 LNPKTGEKIAIPAKRVPTFSAGKLFKDRVQG 91 >gi|330502875|ref|YP_004379744.1| integration host factor subunit beta [Pseudomonas mendocina NK-01] gi|328917161|gb|AEB57992.1| integration host factor subunit beta [Pseudomonas mendocina NK-01] Length = 94 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS KD + T+ ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T Q V++D + V FK L+ R+ +D Sbjct: 61 GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNED 93 >gi|189424947|ref|YP_001952124.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421206|gb|ACD95604.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 93 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 57/92 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ GLS+K+S V +F + ++ GE IKI+ F F VKQK R G Sbjct: 1 MTKADIVERIHQKIGLSKKESAEMVEMVFGIMKNTLESGEKIKIAGFGNFVVKQKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + I RR++ FK S +LK I D+ Sbjct: 61 RNPQTGDAITISARRILTFKPSQVLKSGINDE 92 >gi|319786988|ref|YP_004146463.1| integration host factor subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317465500|gb|ADV27232.1| integration host factor, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 103 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L +D V +L + S GE I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQSHLKAEDVDLAVKSLLEMMAGSLASGERIEIRGFGSFSLHYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T + V + + V FKA L++++ D + +D Sbjct: 61 GRNPKTGESVALPGKHVPHFKAGKELREKVSDVVPAPSEPQD 102 >gi|99080043|ref|YP_612197.1| integration host factor subunit beta [Ruegeria sp. TM1040] gi|259415365|ref|ZP_05739286.1| integration host factor, beta subunit [Silicibacter sp. TrichCH4B] gi|122984465|sp|Q1GK81|IHFB_SILST RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|99036323|gb|ABF62935.1| integration host factor beta subunit [Ruegeria sp. TM1040] gi|259348595|gb|EEW60357.1| integration host factor, beta subunit [Silicibacter sp. TrichCH4B] Length = 95 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ ++ RG+ +++ F F VK++ +RV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMSRGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92 >gi|218768639|ref|YP_002343151.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491] gi|304386918|ref|ZP_07369179.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|14194646|sp|Q9JR30|DBHC_NEIMA RecName: Full=DNA-binding protein HU-beta 2 gi|6900359|emb|CAB71971.1| putative DNA-binding protein [Neisseria meningitidis] gi|121052647|emb|CAM08987.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491] gi|304339023|gb|EFM05116.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091] gi|319410872|emb|CBY91264.1| DNA-binding protein HU-B [Neisseria meningitidis WUE 2594] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E LS++ + FV + + G + + F TFH Q R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I R+ F++ LK + Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVNG 91 >gi|91792020|ref|YP_561671.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] gi|91714022|gb|ABE53948.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] Length = 90 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I++ L++ ++ R + + + ++ G+ I I F +F + +R G Sbjct: 1 MNKSELIAKIAENADLTKAEAGRALKSFETAVTEAMKNGDKISIVGFGSFETTSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIAAATVPKFKAGKTLKDSVN 90 >gi|167841225|ref|ZP_02467909.1| integration host factor subunit beta [Burkholderia thailandensis MSMB43] Length = 107 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ ++V++ +RV FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKRVPHFKPGKELRERV-DGRAGEPLKNDEPED 105 >gi|78222629|ref|YP_384376.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78193884|gb|ABB31651.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V +F I ++ GE IKI+ F F VK+K R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I RR++ FK S +LK I Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSIN 90 >gi|117925417|ref|YP_866034.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609173|gb|ABK44628.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S L++ I+++ LS++++ V+ + EI + RGE +++ F F V+ + SR Sbjct: 1 MTKSQLIQMIAEQHNLSKQNAELAVSLVLGEIVKAMERGERVELRGFGVFEVRHRQSRQA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V + +RV FKA +++R+ Sbjct: 61 RNPKTGDSVAVSEKRVPFFKAGKEMRERV 89 >gi|226330705|ref|ZP_03806223.1| hypothetical protein PROPEN_04625 [Proteus penneri ATCC 35198] gi|225201500|gb|EEG83854.1| hypothetical protein PROPEN_04625 [Proteus penneri ATCC 35198] Length = 95 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + LS K V + + + D+ GE I++ F +F + + R Sbjct: 1 MTKSELIERLAGLQSHLSAKTVEEAVKEMLDHMADTLADGERIEVRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V ++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRVN 91 >gi|327405558|ref|YP_004346396.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] gi|327321066|gb|AEA45558.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] Length = 90 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GLS+ D+ + + + +G+ I + F +F V ++ +R G Sbjct: 1 MNKAELIDAIASEAGLSKADAKKALDAFVGATAGALKKGDRISLVGFGSFSVSKREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + VV FKA + L + Sbjct: 61 RNPQTGKEIAIAAKNVVRFKAGAELSGAVN 90 >gi|163793688|ref|ZP_02187662.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium BAL199] gi|159180799|gb|EDP65316.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium BAL199] Length = 92 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ L ++D R V+T+F+EI ++ RG+ +++ F F VKQ+ +RV Sbjct: 1 MTKSELIARLAEANPHLFQRDVERIVSTIFDEISNALARGDRVELRGFGAFSVKQREARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + VK+ + V FK +L+ ++ Sbjct: 61 GRNPRTGEAVKVSSKFVPFFKTGKLLRDKLN 91 >gi|113953503|ref|YP_731390.1| DNA-binding protein HU [Synechococcus sp. CC9311] gi|113880854|gb|ABI45812.1| DNA-binding protein HU [Synechococcus sp. CC9311] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRVQG 91 >gi|291279581|ref|YP_003496416.1| integration host factor, subunit alpha [Deferribacter desulfuricans SSM1] gi|290754283|dbj|BAI80660.1| integration host factor, alpha subunit [Deferribacter desulfuricans SSM1] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I + G+++KD V +F + + + G ++K+S F F VK +G RVG Sbjct: 1 MTKADIVEKIYNQLGITKKDIANVVDMVFTTMREEILSGNSVKVSGFGNFEVKVRGRRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +EV I PR VV FK S++ K+ + Sbjct: 61 RNPKTGEEVIIPPRYVVSFKPSNLFKEEVN 90 >gi|289665788|ref|ZP_06487369.1| integration host factor subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 103 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDATD 103 >gi|254432410|ref|ZP_05046113.1| DNA-binding protein HU [Cyanobium sp. PCC 7001] gi|197626863|gb|EDY39422.1| DNA-binding protein HU [Cyanobium sp. PCC 7001] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D ++ V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRVQG 91 >gi|83313103|ref|YP_423367.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82947944|dbj|BAE52808.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 99 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Query: 3 KTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K++T+S+L+ +++ L ++D R VTT+F+EI + RG+ +++ F F VK++ Sbjct: 2 KSMTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDP 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RVGRN +T + V +D + V FK L++++ Sbjct: 62 RVGRNPRTGETVSVDGKAVPFFKTGKQLREKLN 94 >gi|14194876|sp|Q9RNZ5|IHFA_ZYMMO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Length = 100 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 60/94 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+TR+D+ + E GLSR DS + + + I D+ +GE +KIS F +F ++ K R Sbjct: 6 PTLTRADITDMLYHEVGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNER 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 VGRN +T EV I PRRV+ F+AS ++++RI+ Sbjct: 66 VGRNPKTGIEVPIAPRRVLTFRASQLMRQRIIKG 99 >gi|318042379|ref|ZP_07974335.1| DNA-binding protein HU [Synechococcus sp. CB0101] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T ++KI +RV F A + K R+ Sbjct: 61 LNPKTGDKIKIPAKRVPAFTAGKLFKDRVQG 91 >gi|294670490|ref|ZP_06735370.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307769|gb|EFE49012.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 102 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + ++ +++ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSSVTKNDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPISARRVVTFHASQKLKGMVE 93 >gi|34498009|ref|NP_902224.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC 12472] gi|34103864|gb|AAQ60224.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC 12472] Length = 89 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ E +S+ + + + + + + +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIDAIAAEADISKAAAAKALDGMVAAVTSALKKGDTVTLVGFGTFYVGERAERSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +KI R F+A LK + Sbjct: 61 RNPKTGATIKIPAARSPKFRAGKALKDAL 89 >gi|332759234|gb|EGJ89543.1| integration host factor, alpha subunit [Shigella flexneri K-671] Length = 92 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 47/85 (55%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71 + + + GLS++D+ V F EI + GE +K+S F F ++ K R GRN +T + Sbjct: 3 EYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGE 62 Query: 72 EVKIDPRRVVVFKASSILKKRIMDD 96 ++ I RRVV F+ LK R+ + Sbjct: 63 DIPITARRVVTFRPGQKLKSRVENA 87 >gi|262197073|ref|YP_003268282.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] gi|262080420|gb|ACY16389.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] Length = 106 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 52/101 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+SDL++ +S L + + V+ +F + ++ GE I+I F +F V+ + GR Sbjct: 4 TKSDLIEQLSSAAKLPKAKAELVVSVMFECMAEALQHGERIEIRGFGSFEVRDYKAYEGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 N +T + V++D +R+ FK L++RI + D Sbjct: 64 NPRTGEPVQVDAKRLPFFKIGKELRERINNGGAATDSAASD 104 >gi|170692398|ref|ZP_02883561.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|323526044|ref|YP_004228197.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|170142828|gb|EDT10993.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|323383046|gb|ADX55137.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 90 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQAEISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90 >gi|126731019|ref|ZP_01746827.1| integration host factor beta subunit [Sagittula stellata E-37] gi|126708321|gb|EBA07379.1| integration host factor beta subunit [Sagittula stellata E-37] Length = 93 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F EI ++ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDSVEVEEKHVPFFKTGKLLRDRLNG 92 >gi|145596669|ref|YP_001160966.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] gi|145306006|gb|ABP56588.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV++++ + GL++ + + + I D+ GE + I F TF VK + +R G Sbjct: 1 MNKRTLVETVAAKAGLTKTAAESALDAMVEAISDALADGEKVAIPGFGTFEVKDRPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I R+ FK ++ LK + Sbjct: 61 RNPRTGETMEIAARKAPGFKPATALKNEV 89 >gi|114570072|ref|YP_756752.1| integration host factor subunit alpha [Maricaulis maris MCS10] gi|122315995|sp|Q0APH3|IHFA_MARMM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|114340534|gb|ABI65814.1| integration host factor, alpha subunit [Maricaulis maris MCS10] Length = 101 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 68/98 (69%), Gaps = 1/98 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR+DL +S+ +E GLSR++S V ++ + D+ G+++K+SSF +F ++ K Sbjct: 1 MSDKTLTRADLAESVYREVGLSRQESADLVQSVLAMVSDNLAAGQSVKLSSFGSFLLRDK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RVGRN +T EV ID RRV+VFK S +LK+R+ + Sbjct: 61 RGRVGRNPKTGVEVPIDARRVLVFKPSQVLKERVDSAL 98 >gi|33240850|ref|NP_875792.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238379|gb|AAQ00445.1| Bacterial nucleoid DNA-binding protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 91 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D V I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVALVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRVQG 91 >gi|77360369|ref|YP_339944.1| integration host factor (IHF), beta subunit, site-specific recombination [Pseudoalteromonas haloplanktis TAC125] gi|123589521|sp|Q3IL99|IHFB_PSEHT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|76875280|emb|CAI86501.1| putative integration host factor (iHF), beta subunit, site-specific recombination [Pseudoalteromonas haloplanktis TAC125] Length = 95 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++++++ + KD V + ++ S + I+I F +F + + R Sbjct: 1 MTKSELIETLAQQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++D + V FK L+ R+ + + Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRDRVNESIA 95 >gi|299144441|ref|ZP_07037521.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518926|gb|EFI42665.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 92 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV SI+++ L++KD+ + + ++ GE +++ F TF V+++ +R G Sbjct: 1 MNKSELVASIAQKSNLTKKDAEMALNGFLATVEEALAGGEKVQLVGFGTFEVRERKAREG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMD 95 RN + + +KI + VF+A LK+ + Sbjct: 61 RNPRDPKEIIKIPASKAPVFRAGKALKEVVNK 92 >gi|300312982|ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae SmR1] gi|300075767|gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein [Herbaspirillum seropedicae SmR1] Length = 101 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L KD+ V T+ + + D+ G+ I+I F +F + ++ R+ Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN ++ +V + +RV FK L++R+ D M G+ +D Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKELRERV-DAMVGQPIRED 101 >gi|15616661|ref|NP_239873.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681974|ref|YP_002468358.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|11131509|sp|P57144|DBH_BUCAI RecName: Full=DNA-binding protein HU gi|25294374|pir||G84933 DNA-binding protein hu-alpha [imported] - Buchnera sp. (strain APS) gi|10038724|dbj|BAB12759.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621707|gb|ACL29863.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085779|gb|ADP65861.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086354|gb|ADP66435.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086932|gb|ADP67012.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087520|gb|ADP67599.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 92 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ISK+ LS+ + + T + I DS +GE+++I F TF V + SR G Sbjct: 1 MNKTQLINVISKKSNLSKIQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++I +V F + LK I Sbjct: 61 RNPQTGKEIQIPATKVPSFTSGKTLKNAIKQ 91 >gi|107022126|ref|YP_620453.1| integration host factor subunit beta [Burkholderia cenocepacia AU 1054] gi|116689071|ref|YP_834694.1| integration host factor subunit beta [Burkholderia cenocepacia HI2424] gi|170732359|ref|YP_001764306.1| integration host factor subunit beta [Burkholderia cenocepacia MC0-3] gi|123072317|sp|Q1BY25|IHFB_BURCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709773|sp|B1JXS2|IHFB_BURCC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709774|sp|A0K5M4|IHFB_BURCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|105892315|gb|ABF75480.1| integration host factor, beta subunit [Burkholderia cenocepacia AU 1054] gi|116647160|gb|ABK07801.1| integration host factor, beta subunit [Burkholderia cenocepacia HI2424] gi|169815601|gb|ACA90184.1| integration host factor, beta subunit [Burkholderia cenocepacia MC0-3] Length = 107 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V++ + V FK L++R+ D G DD Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADDP 103 >gi|124267432|ref|YP_001021436.1| putative integration host factor subunit beta (ihf-beta) protein [Methylibium petroleiphilum PM1] gi|124260207|gb|ABM95201.1| putative integration host factor beta-subunit (ihf-beta) protein [Methylibium petroleiphilum PM1] Length = 111 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 1/105 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDLV + + L+ +D+ V T+ + + D+ RG I+I F +F + ++ R+ Sbjct: 1 MTRSDLVALLGERFSQLTHRDTEFAVKTILDAMSDALARGHRIEIRGFGSFSINRRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 GRN ++ ++V I + V FK L++ + + Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAVDAHTAALEAEAHQTA 105 >gi|330720848|gb|EGG99044.1| Integration host factor alpha subunit [gamma proteobacterium IMCC2047] Length = 100 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ + + + E GL+++++ V F E+ S + + +K+S F F ++ K R Sbjct: 3 ALTKAAIAEKLFDELGLNKREAKEIVEMFFGEVRQSLINNDQVKLSGFGNFGLRDKKERP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +++ I RRVV F+ LK ++ D Sbjct: 63 GRNPKTGEDIPISARRVVTFRPGQKLKAKVED 94 >gi|319763571|ref|YP_004127508.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|330824228|ref|YP_004387531.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|317118132|gb|ADV00621.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|329309600|gb|AEB84015.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ + +S+ +TR + + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKSELIEHIASQADISKAAATRALESTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALKDALN 90 >gi|59801191|ref|YP_207903.1| DbhA [Neisseria gonorrhoeae FA 1090] gi|194098662|ref|YP_002001724.1| DbhA [Neisseria gonorrhoeae NCCP11945] gi|239998975|ref|ZP_04718899.1| DbhA [Neisseria gonorrhoeae 35/02] gi|240014114|ref|ZP_04721027.1| DbhA [Neisseria gonorrhoeae DGI18] gi|240016549|ref|ZP_04723089.1| DbhA [Neisseria gonorrhoeae FA6140] gi|240080673|ref|ZP_04725216.1| DbhA [Neisseria gonorrhoeae FA19] gi|240112961|ref|ZP_04727451.1| DbhA [Neisseria gonorrhoeae MS11] gi|240115715|ref|ZP_04729777.1| DbhA [Neisseria gonorrhoeae PID18] gi|240118011|ref|ZP_04732073.1| DbhA [Neisseria gonorrhoeae PID1] gi|240121676|ref|ZP_04734638.1| DbhA [Neisseria gonorrhoeae PID24-1] gi|240123565|ref|ZP_04736521.1| DbhA [Neisseria gonorrhoeae PID332] gi|240125747|ref|ZP_04738633.1| DbhA [Neisseria gonorrhoeae SK-92-679] gi|240128269|ref|ZP_04740930.1| DbhA [Neisseria gonorrhoeae SK-93-1035] gi|254493764|ref|ZP_05106935.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291] gi|260440472|ref|ZP_05794288.1| DbhA [Neisseria gonorrhoeae DGI2] gi|268594821|ref|ZP_06128988.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268596797|ref|ZP_06130964.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268599038|ref|ZP_06133205.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11] gi|268601391|ref|ZP_06135558.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18] gi|268603720|ref|ZP_06137887.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1] gi|268682191|ref|ZP_06149053.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332] gi|268684342|ref|ZP_06151204.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679] gi|268686663|ref|ZP_06153525.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035] gi|291043776|ref|ZP_06569492.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|293399057|ref|ZP_06643222.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62] gi|59718086|gb|AAW89491.1| putative DNA-binding protein Hu [Neisseria gonorrhoeae FA 1090] gi|193933952|gb|ACF29776.1| DbhA [Neisseria gonorrhoeae NCCP11945] gi|226512804|gb|EEH62149.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291] gi|268548210|gb|EEZ43628.1| DNA-binding protein [Neisseria gonorrhoeae 35/02] gi|268550585|gb|EEZ45604.1| DNA-binding protein [Neisseria gonorrhoeae FA19] gi|268583169|gb|EEZ47845.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11] gi|268585522|gb|EEZ50198.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18] gi|268587851|gb|EEZ52527.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1] gi|268622475|gb|EEZ54875.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332] gi|268624626|gb|EEZ57026.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679] gi|268626947|gb|EEZ59347.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035] gi|291012239|gb|EFE04228.1| DNA-binding protein [Neisseria gonorrhoeae DGI2] gi|291610471|gb|EFF39581.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62] Length = 89 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E +S+ + + + N + ++ +G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEADISKAAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTLKFRAGKALKDAL 89 >gi|78223040|ref|YP_384787.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78194295|gb|ABB32062.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 56/92 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ E GL+ K + V+ +F+ + D+ VR E I+I F +F VK + G Sbjct: 1 MNKSELIEALAAEKGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +++ P+++ FK LK+R+ + Sbjct: 61 RNPKTGDPIEVKPKKLPFFKVGKELKERVDNG 92 >gi|330815898|ref|YP_004359603.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3] gi|327368291|gb|AEA59647.1| Integration host factor, beta subunit [Burkholderia gladioli BSR3] Length = 106 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 2/103 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN ++ ++V++ + V FK L++R+ D G D Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERV-DGRAGEPLKNDS 102 >gi|312795456|ref|YP_004028378.1| integration host factor beta-subunit [Burkholderia rhizoxinica HKI 454] gi|312167231|emb|CBW74234.1| Integration host factor beta-subunit [Burkholderia rhizoxinica HKI 454] Length = 109 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V + + + D+ G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKAMLDAMSDALANGHRIEIRGFGSFALNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ + V++ + V FK L++R+ D G+ D V + Sbjct: 61 GRNPKSGERVQVPEKWVPHFKPGKELRERV-DGKAGQPMKADSVEA 105 >gi|294102069|ref|YP_003553927.1| histone family protein DNA-binding protein [Aminobacterium colombiense DSM 12261] gi|293617049|gb|ADE57203.1| histone family protein DNA-binding protein [Aminobacterium colombiense DSM 12261] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV +++K GL+++++ V + I +S +G+ +++ F TF V+++ +R G Sbjct: 1 MTKTDLVNAVAKATGLNKREAGAAVGAVLQAIENSLAKGDKVQLVGFGTFEVRERAAREG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q + +KI ++V VF+ LK+++ Sbjct: 61 RNPQDPKKVIKIPAKKVPVFRPGKALKEKVE 91 >gi|209521455|ref|ZP_03270163.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|295676520|ref|YP_003605044.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] gi|209498111|gb|EDZ98258.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|295436363|gb|ADG15533.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQADISKAAAGRALDAVIAGVKSTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90 >gi|213649077|ref|ZP_03379130.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 92 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71 + + + GLS++D+ V F EI + GE +K+S F F ++ K R GRN +T + Sbjct: 3 EYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGE 62 Query: 72 EVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 ++ I RRVV F+ LK R+ + + Sbjct: 63 DIPITARRVVTFRPGQKLKSRVENASPKEE 92 >gi|126464029|ref|YP_001045142.1| integration host factor subunit beta [Rhodobacter sphaeroides ATCC 17029] gi|221369597|ref|YP_002520693.1| integration host factor subunit beta [Rhodobacter sphaeroides KD131] gi|332561262|ref|ZP_08415580.1| integration host factor subunit beta [Rhodobacter sphaeroides WS8N] gi|166975885|sp|A3PPV4|IHFB_RHOS1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803538|sp|B9KU92|IHFB_RHOSK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|126105840|gb|ABN78370.1| integration host factor, beta subunit [Rhodobacter sphaeroides ATCC 17029] gi|221162649|gb|ACM03620.1| Integration host factor subunit beta [Rhodobacter sphaeroides KD131] gi|332275060|gb|EGJ20376.1| integration host factor subunit beta [Rhodobacter sphaeroides WS8N] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L+++ R V T+F EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91 >gi|78357794|ref|YP_389243.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220199|gb|ABB39548.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I+ + G+ S+ + + I ++ G+++ + F +F V ++ +R Sbjct: 1 MTKAELVQKIAAKAGMNSKTQAESALDATIAVITEALSAGDSVTFTGFGSFKVAERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +VV F LK + Sbjct: 61 GRNPRTGEEMTIPASKVVKFTPGKALKDAVK 91 >gi|328676006|gb|AEB28681.1| DNA-binding protein HU-beta [Francisella cf. novicida 3523] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKSGDSVTLVGFGTFQVKERSPREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FKA LK + Sbjct: 61 RNPKTGETIKIPASKVPSFKAGKGLKDAVK 90 >gi|292897978|ref|YP_003537347.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC 49946] gi|291197826|emb|CBJ44921.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC 49946] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R Sbjct: 1 MNKTQLIDVIADKADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 >gi|217970426|ref|YP_002355660.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] gi|217507753|gb|ACK54764.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV SI+++ G+++ D+ R + + ++ + E + + F +F+V ++ +R G Sbjct: 1 MNKQELVASIAEKAGMTKADAARALDATVAAVTEALRQDETVTLVGFGSFYVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V F+A LK + Sbjct: 61 RNPRTGKNIKIKAAKVPKFRAGKGLKDSVN 90 >gi|313667657|ref|YP_004047941.1| dna-binding protein HU-beta 2 [Neisseria lactamica ST-640] gi|313005119|emb|CBN86551.1| dna-binding protein HU-beta 2 [Neisseria lactamica 020-06] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+ E LS+ D+ FV + + + G+ + + F +FH Q R G Sbjct: 1 MNKSELIQAIADEAELSKLDAAAFVDAFVSVVTQAMKDGKDVTLVGFGSFHTAQSAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I R+ F+A LK + Sbjct: 61 RNPKTGEPLIIAARKTPKFRAGKALKDAVN 90 >gi|308049648|ref|YP_003913214.1| integration host factor, beta subunit [Ferrimonas balearica DSM 9799] gi|307631838|gb|ADN76140.1| integration host factor, beta subunit [Ferrimonas balearica DSM 9799] Length = 94 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ K+ LS K+ + + ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLASKQSHLSGKEVEGAIKEMLEQMASTLEHGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V++ + V FK L++R+ D + Sbjct: 61 GRNPKTGESVELTGKFVPHFKPGKELRERVNDSL 94 >gi|206900402|ref|YP_002251223.1| non-specific DNA-binding protein [Dictyoglomus thermophilum H-6-12] gi|217967896|ref|YP_002353402.1| histone family protein DNA-binding protein [Dictyoglomus turgidum DSM 6724] gi|206739505|gb|ACI18563.1| non-specific DNA-binding protein [Dictyoglomus thermophilum H-6-12] gi|217336995|gb|ACK42788.1| histone family protein DNA-binding protein [Dictyoglomus turgidum DSM 6724] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + ++++ +++K++T+ V + I ++ +G+ ++ F TF V+++ +R G Sbjct: 1 MKKAEFIAKVAEKAKITKKEATKVVNAVLETITEALSKGDTVQFVGFGTFSVRKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T Q +KI +V VF+ L++ + Sbjct: 61 RNPRTQQPIKIPATKVPVFRPGKELREAVKK 91 >gi|49474169|ref|YP_032211.1| integration host factor subunit alpha [Bartonella quintana str. Toulouse] gi|81647096|sp|Q6FZZ9|IHFA_BARQU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|49239673|emb|CAF26044.1| Integration host factor alpha-subunit [Bartonella quintana str. Toulouse] Length = 104 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 52/102 (50%), Positives = 72/102 (70%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+TR+DL + ++ GLS +S V + NEIC+S VRGEA+K+SSFATF V+ K Sbjct: 3 SKTVTRADLASVVCRKVGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRNKNE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R+GRN +T E I PRRVV FKA+++LK+RI++ R R+ Sbjct: 63 RIGRNPKTGVEAPISPRRVVTFKAANVLKQRILNSHRARQKK 104 >gi|325922080|ref|ZP_08183874.1| integration host factor, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325547417|gb|EGD18477.1| integration host factor, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 103 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILAQRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDLADTAD 103 >gi|39996621|ref|NP_952572.1| integration host factor subunit alpha [Geobacter sulfurreducens PCA] gi|39983502|gb|AAR34895.1| integration host factor, alpha subunit [Geobacter sulfurreducens PCA] gi|298505634|gb|ADI84357.1| integration host factor, alpha subunit [Geobacter sulfurreducens KN400] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V +F I ++ RGE IKI+ F F VK K R G Sbjct: 1 MTKADIVEQIYEKIGFSKKESAELVERVFGLIKETLERGEKIKIAGFGNFVVKDKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I R+++ FK S +LK I Sbjct: 61 RNPQTGDEIIISARKILTFKPSQVLKSSIN 90 >gi|23013445|ref|ZP_00053339.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ GLS+ D+ + V +F I + G+ +++ F TF V + + G Sbjct: 1 MNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++KI + FKA LK I Sbjct: 61 RNPRTGEKIKIPASKQPKFKAGKGLKDGIQ 90 >gi|194476545|ref|YP_002048724.1| DNA binding protein HU [Paulinella chromatophora] gi|171191552|gb|ACB42514.1| DNA binding protein HU [Paulinella chromatophora] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPTFTAGKMFKDRVQG 91 >gi|149919502|ref|ZP_01907982.1| integration host factor, alpha subunit [Plesiocystis pacifica SIR-1] gi|149819627|gb|EDM79054.1| integration host factor, alpha subunit [Plesiocystis pacifica SIR-1] Length = 94 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V + G S+K++ V +F+ + GE IKIS F F V+ K R Sbjct: 1 MTKADIVDKVCDRVGGFSKKEAADLVDQVFDTMKQVLETGEKIKISGFGNFVVRDKKPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT E+ I+ RRV+ FK S++LK + Sbjct: 61 GRNPQTGDEITIEARRVLTFKPSNVLKVALNSG 93 >gi|323489683|ref|ZP_08094910.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus donghaensis MPA1U2] gi|323396814|gb|EGA89633.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus donghaensis MPA1U2] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S+++ LSRKD+ + V F I D+ +GE +++ F F V+++ +R G Sbjct: 1 MNKTELVNSVAEAAELSRKDAAKAVDAAFETIQDALTKGEKVQLIGFGNFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E++I +V FK LK + Sbjct: 61 RNPQTGAEIEIAASKVPAFKPGKALKDAVK 90 >gi|302878720|ref|YP_003847284.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302581509|gb|ADL55520.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G ++ D+ R + + ++ G+ I + F +F V+++ +R G Sbjct: 1 MNRKELIDALATKTGSTKADAARNFAAFIDVVTETLTAGDDISLVGFGSFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T E+KI + FK + LK + D Sbjct: 61 RNPATGAELKIAASKSPAFKPGATLKSAVNDS 92 >gi|289423339|ref|ZP_06425147.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L] gi|289156270|gb|EFD04927.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L] Length = 92 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ L++K+S + + + ++ V GE +++ F TF +++ +R G Sbjct: 1 MNKAELVAKIAEKSNLTKKESELALNAFMDVVEETLVAGEKVQLVGFGTFETRERAARSG 60 Query: 65 RNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95 RN + + ++I + VFKA LK+ + Sbjct: 61 RNPRKPDETIEIPASKAPVFKAGKGLKELVNK 92 >gi|158425340|ref|YP_001526632.1| integration host factor subunit beta [Azorhizobium caulinodans ORS 571] gi|172048041|sp|A8IN83|IHFB_AZOC5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|158332229|dbj|BAF89714.1| integration host factor beta subunit [Azorhizobium caulinodans ORS 571] Length = 94 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + ++I D+ +G+ +++ F F VKQ+ +R Sbjct: 1 MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T ++V + + V FK +++R+ Sbjct: 61 GRNPRTGKQVDVSSKVVPYFKTGKEMRERLNGA 93 >gi|226943705|ref|YP_002798778.1| integration host factor subunit beta [Azotobacter vinelandii DJ] gi|259492033|sp|C1DRR5|IHFB_AZOVD RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226718632|gb|ACO77803.1| integration host factor, beta subunit [Azotobacter vinelandii DJ] Length = 92 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I + G LS KD + T+ ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTQQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T Q V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGQTVRLDGKFVPHFKPGKELRDRVNE 92 >gi|62289129|ref|YP_220922.1| integration host factor subunit beta [Brucella abortus bv. 1 str. 9-941] gi|82699068|ref|YP_413642.1| integration host factor subunit beta [Brucella melitensis biovar Abortus 2308] gi|189023405|ref|YP_001934173.1| integration host factor subunit beta [Brucella abortus S19] gi|254690457|ref|ZP_05153711.1| integration host factor subunit beta [Brucella abortus bv. 6 str. 870] gi|254694946|ref|ZP_05156774.1| integration host factor subunit beta [Brucella abortus bv. 3 str. Tulya] gi|254696577|ref|ZP_05158405.1| integration host factor subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254731490|ref|ZP_05190068.1| integration host factor subunit beta [Brucella abortus bv. 4 str. 292] gi|256258713|ref|ZP_05464249.1| integration host factor subunit beta [Brucella abortus bv. 9 str. C68] gi|260546427|ref|ZP_05822167.1| integration host factor subunit beta [Brucella abortus NCTC 8038] gi|260756009|ref|ZP_05868357.1| integration host factor subunit beta [Brucella abortus bv. 6 str. 870] gi|260759233|ref|ZP_05871581.1| integration host factor subunit beta [Brucella abortus bv. 4 str. 292] gi|260760955|ref|ZP_05873298.1| integration host factor subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260885029|ref|ZP_05896643.1| integration host factor subunit beta [Brucella abortus bv. 9 str. C68] gi|261215285|ref|ZP_05929566.1| integration host factor subunit beta [Brucella abortus bv. 3 str. Tulya] gi|297247545|ref|ZP_06931263.1| integration host factor, beta subunit [Brucella abortus bv. 5 str. B3196] gi|75505361|sp|Q57FM3|IHFB_BRUAB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123768445|sp|Q2YP18|IHFB_BRUA2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709771|sp|B2S8E6|IHFB_BRUA1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|62195261|gb|AAX73561.1| IhfB, integration host factor, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82615169|emb|CAJ10108.1| Histone-like bacterial DNA-binding protein:Integration host factor, beta subunit [Brucella melitensis biovar Abortus 2308] gi|189018977|gb|ACD71699.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19] gi|260096534|gb|EEW80410.1| integration host factor subunit beta [Brucella abortus NCTC 8038] gi|260669551|gb|EEX56491.1| integration host factor subunit beta [Brucella abortus bv. 4 str. 292] gi|260671387|gb|EEX58208.1| integration host factor subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260676117|gb|EEX62938.1| integration host factor subunit beta [Brucella abortus bv. 6 str. 870] gi|260874557|gb|EEX81626.1| integration host factor subunit beta [Brucella abortus bv. 9 str. C68] gi|260916892|gb|EEX83753.1| integration host factor subunit beta [Brucella abortus bv. 3 str. Tulya] gi|297174714|gb|EFH34061.1| integration host factor, beta subunit [Brucella abortus bv. 5 str. B3196] Length = 94 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V ++ + V FK L+ R+ + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94 >gi|309378123|emb|CBX23232.1| DNA-binding protein HU-beta [Neisseria lactamica Y92-1009] Length = 94 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + D+ +G+ + + F TF+V ++ R G Sbjct: 6 VNKSELIEAIAQEAGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 66 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 94 >gi|119896606|ref|YP_931819.1| DNA-binding protein HU [Azoarcus sp. BH72] gi|119669019|emb|CAL92932.1| DNA-binding protein HU (DNA-binding protein II) [Azoarcus sp. BH72] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V++++ +SR + R ++ + + I + +GE + + F +F V ++ +R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSAVLDIISEQLGKGEKVAFTGFGSFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + I V F A + LK + Sbjct: 61 RNPQTGATIDIAASSVPKFTAGATLKAAVNK 91 >gi|15602493|ref|NP_245565.1| hypothetical protein PM0628 [Pasteurella multocida subsp. multocida str. Pm70] gi|14194851|sp|Q9CN18|IHFA_PASMU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|12720902|gb|AAK02712.1| HimA [Pasteurella multocida subsp. multocida str. Pm70] Length = 98 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L ++ ++ L+++D+ V F EI + GE +K+S F F ++ K SR Sbjct: 2 TLTKVELADNLIEKLHLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVV FK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVAFKPGQKLRARVEK 93 >gi|59800752|ref|YP_207464.1| IfhA [Neisseria gonorrhoeae FA 1090] gi|194098031|ref|YP_002001079.1| integration host factor subunit alpha [Neisseria gonorrhoeae NCCP11945] gi|239998494|ref|ZP_04718418.1| integration host factor subunit alpha [Neisseria gonorrhoeae 35/02] gi|240013619|ref|ZP_04720532.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI18] gi|240016058|ref|ZP_04722598.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA6140] gi|240080200|ref|ZP_04724743.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA19] gi|240112413|ref|ZP_04726903.1| integration host factor subunit alpha [Neisseria gonorrhoeae MS11] gi|240115153|ref|ZP_04729215.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID18] gi|240117437|ref|ZP_04731499.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID1] gi|240120689|ref|ZP_04733651.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID24-1] gi|240122993|ref|ZP_04735949.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID332] gi|240125245|ref|ZP_04738131.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|240127699|ref|ZP_04740360.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|254493213|ref|ZP_05106384.1| integration host factor subunit alpha [Neisseria gonorrhoeae 1291] gi|260441029|ref|ZP_05794845.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI2] gi|268594353|ref|ZP_06128520.1| integration host factor subunit alpha [Neisseria gonorrhoeae 35/02] gi|268596349|ref|ZP_06130516.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA19] gi|268598476|ref|ZP_06132643.1| integration host factor subunit alpha [Neisseria gonorrhoeae MS11] gi|268600829|ref|ZP_06134996.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID18] gi|268603134|ref|ZP_06137301.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID1] gi|268681615|ref|ZP_06148477.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID332] gi|268683843|ref|ZP_06150705.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268686084|ref|ZP_06152946.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291044361|ref|ZP_06570070.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI2] gi|293399547|ref|ZP_06643700.1| integration host factor, alpha subunit [Neisseria gonorrhoeae F62] gi|75507418|sp|Q5F9T5|IHFA_NEIG1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226709736|sp|B4RJZ4|IHFA_NEIG2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|59717647|gb|AAW89052.1| integration host factor alpha subunit [Neisseria gonorrhoeae FA 1090] gi|193933321|gb|ACF29145.1| IfhA [Neisseria gonorrhoeae NCCP11945] gi|226512253|gb|EEH61598.1| integration host factor subunit alpha [Neisseria gonorrhoeae 1291] gi|268547742|gb|EEZ43160.1| integration host factor subunit alpha [Neisseria gonorrhoeae 35/02] gi|268550137|gb|EEZ45156.1| integration host factor subunit alpha [Neisseria gonorrhoeae FA19] gi|268582607|gb|EEZ47283.1| integration host factor subunit alpha [Neisseria gonorrhoeae MS11] gi|268584960|gb|EEZ49636.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID18] gi|268587265|gb|EEZ51941.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID1] gi|268621899|gb|EEZ54299.1| integration host factor subunit alpha [Neisseria gonorrhoeae PID332] gi|268624127|gb|EEZ56527.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|268626368|gb|EEZ58768.1| integration host factor subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291011255|gb|EFE03251.1| integration host factor subunit alpha [Neisseria gonorrhoeae DGI2] gi|291610116|gb|EFF39238.1| integration host factor, alpha subunit [Neisseria gonorrhoeae F62] gi|317163772|gb|ADV07313.1| integration host factor subunit alpha [Neisseria gonorrhoeae TCDC-NG08107] Length = 100 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + +++ D+ V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93 >gi|198283163|ref|YP_002219484.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666540|ref|YP_002425392.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247684|gb|ACH83277.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518753|gb|ACK79339.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC 23270] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I++E G++R + + L + D+ G+ + + F +F V + +R G Sbjct: 1 MNKSELIEKIAEEAGVTRAAAGHTLDALVKVVTDALKAGDQVTLVGFGSFLVSSREARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+ I R FKA L+ + Sbjct: 61 RNPATGAEIMIAASRTPKFKAGKALRDAVN 90 >gi|77465590|ref|YP_355093.1| integration host factor subunit beta [Rhodobacter sphaeroides 2.4.1] gi|14194882|sp|Q9X4E2|IHFB_RHOS4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|4761124|gb|AAD29258.1|AF107093_3 integration host factor beta-subunit [Rhodobacter sphaeroides] gi|77390008|gb|ABA81192.1| Integration host factor beta-subunit [Rhodobacter sphaeroides 2.4.1] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L+++ R V T+F EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91 >gi|260428004|ref|ZP_05781983.1| integration host factor, beta subunit [Citreicella sp. SE45] gi|260422496|gb|EEX15747.1| integration host factor, beta subunit [Citreicella sp. SE45] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I++E L ++D R V T+F EI ++ RG+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGDAVEVEEKHVPFFKTGKLLRDRLNG 92 >gi|296112369|ref|YP_003626307.1| integration host factor subunit alpha [Moraxella catarrhalis RH4] gi|295920063|gb|ADG60414.1| integration host factor subunit alpha [Moraxella catarrhalis RH4] gi|326561877|gb|EGE12212.1| integration host factor subunit alpha [Moraxella catarrhalis 7169] gi|326563312|gb|EGE13579.1| integration host factor subunit alpha [Moraxella catarrhalis 46P47B1] gi|326563427|gb|EGE13692.1| integration host factor subunit alpha [Moraxella catarrhalis 12P80B1] gi|326565966|gb|EGE16127.1| integration host factor subunit alpha [Moraxella catarrhalis 103P14B1] gi|326568900|gb|EGE18969.1| integration host factor subunit alpha [Moraxella catarrhalis BC1] gi|326569200|gb|EGE19261.1| integration host factor subunit alpha [Moraxella catarrhalis BC7] gi|326571873|gb|EGE21878.1| integration host factor subunit alpha [Moraxella catarrhalis BC8] gi|326575385|gb|EGE25310.1| integration host factor subunit alpha [Moraxella catarrhalis 101P30B1] gi|326576526|gb|EGE26434.1| integration host factor subunit alpha [Moraxella catarrhalis CO72] gi|326577997|gb|EGE27861.1| integration host factor subunit alpha [Moraxella catarrhalis O35E] Length = 98 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 51/96 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V ++ L+R+ + + V F EI S +G +K+S F F +K K R Sbjct: 3 ALTKADMVDELTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + V I RRVV FKA L+ I G Sbjct: 63 GRNPKTGESVPIQARRVVTFKAGQKLRGWIDSQNEG 98 >gi|221067879|ref|ZP_03543984.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|264677812|ref|YP_003277718.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2] gi|299531632|ref|ZP_07045037.1| histone-like DNA-binding protein [Comamonas testosteroni S44] gi|220712902|gb|EED68270.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|262208324|gb|ACY32422.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2] gi|298720348|gb|EFI61300.1| histone-like DNA-binding protein [Comamonas testosteroni S44] Length = 90 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALDSTIDAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDSIKIKAAKVPKFRPGKALKDALN 90 >gi|83720765|ref|YP_442176.1| integration host factor subunit beta [Burkholderia thailandensis E264] gi|167581054|ref|ZP_02373928.1| integration host factor subunit beta [Burkholderia thailandensis TXDOH] gi|167619132|ref|ZP_02387763.1| integration host factor subunit beta [Burkholderia thailandensis Bt4] gi|257138365|ref|ZP_05586627.1| integration host factor subunit beta [Burkholderia thailandensis E264] gi|123767673|sp|Q2SY23|IHFB_BURTA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|83654590|gb|ABC38653.1| integration host factor, beta subunit [Burkholderia thailandensis E264] Length = 107 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ ++V++ + V FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV-DGRAGEPLKNDEPED 105 >gi|146280834|ref|YP_001170987.1| HU family DNA-binding protein [Pseudomonas stutzeri A1501] gi|145569039|gb|ABP78145.1| DNA-binding protein, HU family [Pseudomonas stutzeri A1501] Length = 105 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ LS+ + R + + +EI ++ R +++ + F TF + +G+R G Sbjct: 16 MRKPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTG 75 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q V I V FK +LK + Sbjct: 76 KNPQTGQPVTIKASNTVAFKPGKMLKDAVN 105 >gi|15598357|ref|NP_251851.1| integration host factor subunit beta [Pseudomonas aeruginosa PAO1] gi|107102691|ref|ZP_01366609.1| hypothetical protein PaerPA_01003757 [Pseudomonas aeruginosa PACS2] gi|116051150|ref|YP_790019.1| integration host factor subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|152988540|ref|YP_001347349.1| integration host factor subunit beta [Pseudomonas aeruginosa PA7] gi|218890647|ref|YP_002439511.1| integration host factor subunit beta [Pseudomonas aeruginosa LESB58] gi|254236124|ref|ZP_04929447.1| integration host factor beta subunit [Pseudomonas aeruginosa C3719] gi|254241850|ref|ZP_04935172.1| integration host factor beta subunit [Pseudomonas aeruginosa 2192] gi|296388355|ref|ZP_06877830.1| integration host factor subunit beta [Pseudomonas aeruginosa PAb1] gi|313108473|ref|ZP_07794477.1| integration host factor beta subunit [Pseudomonas aeruginosa 39016] gi|2495249|sp|Q51473|IHFB_PSEAE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|122260285|sp|Q02PW7|IHFB_PSEAB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166926151|sp|A6V2R4|IHFB_PSEA7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709799|sp|B7VAL8|IHFB_PSEA8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|5565911|gb|AAD45260.1|AF147795_1 integration host factor beta-subunit [Pseudomonas aeruginosa] gi|8118236|gb|AAF72950.1|AF236052_1 integration host factor beta-subunit [Pseudomonas aeruginosa] gi|9949277|gb|AAG06549.1|AE004740_2 integration host factor beta subunit [Pseudomonas aeruginosa PAO1] gi|20559752|gb|AAM27536.1|AF498400_2 HimD [Pseudomonas aeruginosa] gi|20559775|gb|AAM27554.1|AF498401_2 HimD [Pseudomonas aeruginosa] gi|20559792|gb|AAM27569.1|AF498402_2 HimD [Pseudomonas aeruginosa] gi|20559808|gb|AAM27583.1|AF498403_2 HimD [Pseudomonas aeruginosa] gi|20559837|gb|AAM27609.1|AF498404_2 HimD [Pseudomonas aeruginosa] gi|20559852|gb|AAM27623.1|AF498405_2 HimD [Pseudomonas aeruginosa] gi|20559866|gb|AAM27636.1|AF498406_2 HimD [Pseudomonas aeruginosa] gi|20559871|gb|AAM27640.1|AF498407_2 HimD [Pseudomonas aeruginosa] gi|20559886|gb|AAM27654.1|AF498408_2 HimD [Pseudomonas aeruginosa] gi|20559907|gb|AAM27674.1|AF498409_2 HimD [Pseudomonas aeruginosa] gi|20559919|gb|AAM27685.1|AF498410_2 HimD [Pseudomonas aeruginosa] gi|20559942|gb|AAM27705.1|AF498411_2 HimD [Pseudomonas aeruginosa] gi|20559962|gb|AAM27720.1|AF498412_2 HimD [Pseudomonas aeruginosa] gi|20559986|gb|AAM27740.1|AF498413_2 HimD [Pseudomonas aeruginosa] gi|20560009|gb|AAM27760.1|AF498414_2 HimD [Pseudomonas aeruginosa] gi|20560047|gb|AAM27793.1|AF498416_2 HimD [Pseudomonas aeruginosa] gi|20560068|gb|AAM27813.1|AF498417_2 HimD [Pseudomonas aeruginosa] gi|20560086|gb|AAM27828.1|AF498418_2 HimD [Pseudomonas aeruginosa] gi|20560109|gb|AAM27848.1|AF498419_2 HimD [Pseudomonas aeruginosa] gi|20560136|gb|AAM27868.1|AF498420_2 HimD [Pseudomonas aeruginosa] gi|535713|gb|AAA65950.1| integration host factor beta subunit [Pseudomonas aeruginosa] gi|6690128|gb|AAF23995.1| Ihf-Beta [Pseudomonas aeruginosa] gi|27502127|gb|AAO17408.1| himD/ihfB [Pseudomonas aeruginosa] gi|27502131|gb|AAO17411.1| himD/ihfB [Pseudomonas aeruginosa] gi|115586371|gb|ABJ12386.1| integration host factor beta subunit [Pseudomonas aeruginosa UCBPP-PA14] gi|126168055|gb|EAZ53566.1| integration host factor beta subunit [Pseudomonas aeruginosa C3719] gi|126195228|gb|EAZ59291.1| integration host factor beta subunit [Pseudomonas aeruginosa 2192] gi|150963698|gb|ABR85723.1| integration host factor, beta subunit [Pseudomonas aeruginosa PA7] gi|218770870|emb|CAW26635.1| integration host factor beta subunit [Pseudomonas aeruginosa LESB58] gi|310880979|gb|EFQ39573.1| integration host factor beta subunit [Pseudomonas aeruginosa 39016] Length = 94 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS KD + T+ ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92 >gi|78184156|ref|YP_376591.1| histone-like DNA-binding protein [Synechococcus sp. CC9902] gi|78213608|ref|YP_382387.1| nucleoid protein Hbs [Synechococcus sp. CC9605] gi|116071206|ref|ZP_01468475.1| Histone-like DNA-binding protein [Synechococcus sp. BL107] gi|260435607|ref|ZP_05789577.1| DNA-binding protein HU 1 [Synechococcus sp. WH 8109] gi|78168450|gb|ABB25547.1| bacterial nucleoid protein Hbs [Synechococcus sp. CC9902] gi|78198067|gb|ABB35832.1| Histone-like DNA-binding protein [Synechococcus sp. CC9605] gi|116066611|gb|EAU72368.1| Histone-like DNA-binding protein [Synechococcus sp. BL107] gi|260413481|gb|EEX06777.1| DNA-binding protein HU 1 [Synechococcus sp. WH 8109] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSMVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I +RV F A + K R+ Sbjct: 61 LNPKTGEKIAIPAKRVPAFTAGKMFKDRVQG 91 >gi|145633212|ref|ZP_01788943.1| translation initiation factor IF-3 [Haemophilus influenzae 3655] gi|145634922|ref|ZP_01790629.1| integration host factor alpha-subunit [Haemophilus influenzae PittAA] gi|229845127|ref|ZP_04465262.1| integration host factor alpha-subunit [Haemophilus influenzae 6P18H1] gi|144986058|gb|EDJ92648.1| translation initiation factor IF-3 [Haemophilus influenzae 3655] gi|145267788|gb|EDK07785.1| integration host factor alpha-subunit [Haemophilus influenzae PittAA] gi|229811963|gb|EEP47657.1| integration host factor alpha-subunit [Haemophilus influenzae 6P18H1] Length = 96 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ + Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEN 94 >gi|84515231|ref|ZP_01002593.1| integration host factor beta subunit [Loktanella vestfoldensis SKA53] gi|84510514|gb|EAQ06969.1| integration host factor beta subunit [Loktanella vestfoldensis SKA53] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D + V T+F+ I D+ +G +++ F F VK++ R+ Sbjct: 1 MIRSELIQKIADENPHLYQRDVEKIVNTIFDRITDAMAQGNRVELRGFGAFSVKKRDPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V++D + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRLNG 92 >gi|194336507|ref|YP_002018301.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308984|gb|ACF43684.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 102 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 55/98 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T+ DLV I+ GL++ ++ V +LF I DS G+ I+I F +F+++ K Sbjct: 1 MGTTTTKVDLVNVIAHRTGLTKNETESVVNSLFESIIDSLKAGKRIEIRGFGSFNIRHKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R RN +T ++V ++P+ V FK S K + + ++ Sbjct: 61 LRQARNPRTGEKVTVEPKNVPAFKISKEFKLAVSESLK 98 >gi|260574086|ref|ZP_05842091.1| integration host factor, beta subunit [Rhodobacter sp. SW2] gi|259023552|gb|EEW26843.1| integration host factor, beta subunit [Rhodobacter sp. SW2] Length = 93 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L+++ R V T+F EI ++ +G+ +++ F F VK + +RV Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALAKGDRVELRGFGAFSVKARDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V+++ ++V FK +L+ R+ Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLN 91 >gi|33863662|ref|NP_895222.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9313] gi|124022281|ref|YP_001016588.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9303] gi|33635245|emb|CAE21570.1| Bacterial DNA-binding protein [Prochlorococcus marinus str. MIT 9313] gi|123962567|gb|ABM77323.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9303] Length = 91 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V + I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T Q++KI +RV F A + K R+ Sbjct: 61 LNPKTGQKIKIPAKRVPAFTAGKMFKDRVQG 91 >gi|148549147|ref|YP_001269249.1| integration host factor subunit beta [Pseudomonas putida F1] gi|167032377|ref|YP_001667608.1| integration host factor subunit beta [Pseudomonas putida GB-1] gi|325276947|ref|ZP_08142631.1| integration host factor subunit beta [Pseudomonas sp. TJI-51] gi|166975882|sp|A5W7F5|IHFB_PSEP1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045040|sp|B0KTY3|IHFB_PSEPG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|148513205|gb|ABQ80065.1| integration host factor, beta subunit [Pseudomonas putida F1] gi|166858865|gb|ABY97272.1| integration host factor, beta subunit [Pseudomonas putida GB-1] gi|324097922|gb|EGB96084.1| integration host factor subunit beta [Pseudomonas sp. TJI-51] Length = 98 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T Q V ++ + V FK L+ R+ ++ Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEEDEAE 97 >gi|294851552|ref|ZP_06792225.1| integration host factor [Brucella sp. NVSL 07-0026] gi|294820141|gb|EFG37140.1| integration host factor [Brucella sp. NVSL 07-0026] Length = 101 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + Sbjct: 5 SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +R GRN +T + V ++ + V FK L+ R+ + Sbjct: 65 ARSGRNPRTGETVDVEEKWVPFFKTGKELRDRLNGAV 101 >gi|20560029|gb|AAM27778.1|AF498415_2 HimD [Pseudomonas aeruginosa] Length = 93 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS KD + T+ ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92 >gi|303230302|ref|ZP_07317069.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a] gi|302515085|gb|EFL57060.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a] Length = 99 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 55/99 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN Q + + I + FKA LK+++ ++ Sbjct: 61 RNPQNGKTITIKASKSPAFKAGKGLKEQVNAAPAKKRKK 99 >gi|78065633|ref|YP_368402.1| integration host factor subunit beta [Burkholderia sp. 383] gi|206561284|ref|YP_002232049.1| integration host factor subunit beta [Burkholderia cenocepacia J2315] gi|123770067|sp|Q39IF8|IHFB_BURS3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709775|sp|B4EB39|IHFB_BURCJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|77966378|gb|ABB07758.1| Integration host factor, beta subunit [Burkholderia sp. 383] gi|198037326|emb|CAR53251.1| integration host factor beta-subunit [Burkholderia cenocepacia J2315] gi|325520509|gb|EGC99605.1| integration host factor subunit beta [Burkholderia sp. TJI49] Length = 107 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V++ + V FK L++R+ D G DD Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADDP 103 >gi|78221576|ref|YP_383323.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78192831|gb|ABB30598.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 94 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 52/94 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K L++ + + V + + + D+ +G+ + + F +F V + +R G Sbjct: 1 MTKAELVDAVAKSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI +V F+ LK + + Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVAAKKK 94 >gi|56707752|ref|YP_169648.1| histone-like protein HU form B [Francisella tularensis subsp. tularensis SCHU S4] gi|89256252|ref|YP_513614.1| histone-like protein HU form B [Francisella tularensis subsp. holarctica LVS] gi|110670223|ref|YP_666780.1| histone-like protein HU form B [Francisella tularensis subsp. tularensis FSC198] gi|115314709|ref|YP_763432.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica OSU18] gi|134302066|ref|YP_001122035.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis WY96-3418] gi|156502313|ref|YP_001428378.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica FTNF002-00] gi|187931474|ref|YP_001891458.1| DNA-binding protein HU-beta [Francisella tularensis subsp. mediasiatica FSC147] gi|224456822|ref|ZP_03665295.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254367591|ref|ZP_04983612.1| histone-like protein hu form B [Francisella tularensis subsp. holarctica 257] gi|254369241|ref|ZP_04985253.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp. holarctica FSC022] gi|254370256|ref|ZP_04986261.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis FSC033] gi|254874565|ref|ZP_05247275.1| DNA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|290953592|ref|ZP_06558213.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica URFT1] gi|295313093|ref|ZP_06803783.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica URFT1] gi|56604244|emb|CAG45260.1| Histone-like protein HU form B [Francisella tularensis subsp. tularensis SCHU S4] gi|89144083|emb|CAJ79334.1| Histone-like protein HU form B [Francisella tularensis subsp. holarctica LVS] gi|110320556|emb|CAL08643.1| Histone-like protein HU form B [Francisella tularensis subsp. tularensis FSC198] gi|115129608|gb|ABI82795.1| DNA-binding protein HU-beta [Francisella tularensis subsp. holarctica OSU18] gi|134049843|gb|ABO46914.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis WY96-3418] gi|134253402|gb|EBA52496.1| histone-like protein hu form B [Francisella tularensis subsp. holarctica 257] gi|151568499|gb|EDN34153.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis FSC033] gi|156252916|gb|ABU61422.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122191|gb|EDO66331.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp. holarctica FSC022] gi|187712383|gb|ACD30680.1| DNA-binding protein HU-beta [Francisella tularensis subsp. mediasiatica FSC147] gi|254840564|gb|EET19000.1| DNA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282158923|gb|ADA78314.1| DNA-binding protein HU-beta [Francisella tularensis subsp. tularensis NE061598] Length = 90 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FKAS LK + Sbjct: 61 RNPKTGETIKIPASKVPSFKASKGLKDAVK 90 >gi|159903915|ref|YP_001551259.1| histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9211] gi|159889091|gb|ABX09305.1| Bacterial histone-like DNA-binding protein [Prochlorococcus marinus str. MIT 9211] Length = 92 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + + I DS V G+ + I F +F + + +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVALVIDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKLFKDRVQ 90 >gi|85709150|ref|ZP_01040216.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1] gi|85690684|gb|EAQ30687.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1] Length = 99 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 39/93 (41%), Positives = 63/93 (67%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL ++I+++ GLSR +S V ++ ++ D+ GE +KIS F +F ++ K R+ Sbjct: 6 TLTRADLAETINRKMGLSRAESLDLVESILTKMSDALANGENVKISGFGSFVLRDKNERI 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T EV I PRRV+ F+AS +LK++I Sbjct: 66 GRNPKTGVEVPITPRRVLTFRASQLLKEQIAKG 98 >gi|312882499|ref|ZP_07742240.1| integration host factor subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309369899|gb|EFP97410.1| integration host factor subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 92 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLEGGDRIEIRGFGSFSLHFREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V +D + V FK L++R+ Sbjct: 61 GRNPKTGDKVDLDGKYVPHFKPGKELRERVN 91 >gi|300722537|ref|YP_003711827.1| integration host factor (IHF) subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297629044|emb|CBJ89629.1| integration host factor (IHF), beta subunit, site-specific recombination [Xenorhabdus nematophila ATCC 19061] Length = 96 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++++ + K V + + + ++ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLAEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|261868043|ref|YP_003255965.1| integration host factor subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|293389947|ref|ZP_06634281.1| integration host factor, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413375|gb|ACX82746.1| integration host factor, alpha subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950481|gb|EFE00600.1| integration host factor, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 98 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F LS++++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRVEK 93 >gi|300023830|ref|YP_003756441.1| integration host factor subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299525651|gb|ADJ24120.1| integration host factor, beta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 99 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ L +D R + +F+EI D+ RG+ +++ F F VK + SR Sbjct: 1 MIKSELVQKIATANPHLYHRDVERIINVIFDEIVDALSRGDRVELRGFGAFTVKHRASRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V + + V FK L+ R+ Sbjct: 61 GRNPRTGTTVAVAEKFVPFFKTGKELRDRLN 91 >gi|237814623|ref|ZP_04593621.1| integration host factor, beta subunit [Brucella abortus str. 2308 A] gi|237789460|gb|EEP63670.1| integration host factor, beta subunit [Brucella abortus str. 2308 A] Length = 117 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + Sbjct: 21 SKAVIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 80 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +R GRN +T + V ++ + V FK L+ R+ + Sbjct: 81 ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 117 >gi|170730702|ref|YP_001776135.1| integration host factor subunit beta [Xylella fastidiosa M12] gi|167965495|gb|ACA12505.1| integration host factor, beta subunit [Xylella fastidiosa M12] Length = 111 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++K L D V +L + + G+ I+I F +F + + R Sbjct: 8 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + V + + V FK L++R+ + +C Sbjct: 68 GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLAECGD 108 >gi|127511364|ref|YP_001092561.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] gi|126636659|gb|ABO22302.1| histone family protein DNA-binding protein [Shewanella loihica PV-4] Length = 90 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ ++ R + + + ++ GE I I F +F + +R G Sbjct: 1 MNKTELVAKIAESAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETTSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAAVVPKFKAGKTLKDSVN 90 >gi|291279359|ref|YP_003496194.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1] gi|290754061|dbj|BAI80438.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1] Length = 90 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ + GL + ++ R + + ++ G+ + + F TF V ++ R G Sbjct: 1 MNKKELIEKIASKAGLKKSEAERALAAFEEAVIEALKAGDKVTLVGFGTFSVSERKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I + F A +LK + Sbjct: 61 RNPQTGEEIIIPATKTPKFSAGKLLKDSVK 90 >gi|182677372|ref|YP_001831518.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633255|gb|ACB94029.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 171 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 60/93 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL S+ G+SRKD+ R VT + +EI ++ VRGE ++++SF F ++ K R+ Sbjct: 71 TVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRI 130 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T I PRRV+ FKAS +L R+ D Sbjct: 131 GRNPRTGVAAVIPPRRVLKFKASKVLLDRLNGD 163 >gi|295134367|ref|YP_003585043.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982382|gb|ADF52847.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++++ G+S+ + + + + I S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTDLIDAMAEDAGISKAAAKKALESFLGGIETSLKKGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA + L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAVN 90 >gi|172036192|ref|YP_001802693.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC 51142] gi|171697646|gb|ACB50627.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC 51142] Length = 93 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I+ + L++K+++ + L + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEELVNMIAAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N QT Q + I V F A + K+++++ + Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93 >gi|222084668|ref|YP_002543197.1| integration host factor, beta subunit [Agrobacterium radiobacter K84] gi|254803525|sp|B9J885|IHFB_AGRRK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|221722116|gb|ACM25272.1| integration host factor, beta subunit [Agrobacterium radiobacter K84] Length = 102 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V ++ + V FK L++R+ Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91 >gi|206890650|ref|YP_002249614.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742588|gb|ACI21645.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+ + L++ ++ + + + ++ +G+ + + F +F+V ++ +R G Sbjct: 1 MTKAELVSKIASKAELTKAEAAKALDATIEAVKEALKKGDKVTLVGFGSFYVSKRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T QE+KI +V F A LK+ + Sbjct: 61 RNPRTGQEIKIPATKVPKFTAGKSLKEAVK 90 >gi|171463686|ref|YP_001797799.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193224|gb|ACB44185.1| integration host factor, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 107 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 55/98 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++L +++ + GL+++++ + F+ I S G +KIS F F ++ K +R Sbjct: 9 TVTKNELSEALFDQVGLNKREAKDMIDAFFDRIGRSLEAGVEVKISGFGNFQLRNKSARP 68 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN +T Q + I RRVV F AS LK + R + Sbjct: 69 GRNPKTGQMIPIAARRVVTFHASQKLKDVVESHARENR 106 >gi|198449285|ref|YP_002221439.1| DNA binding protein HU-beta [Burkholderia phage KS10] gi|206559950|ref|YP_002230714.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia J2315] gi|197725446|gb|ACH72942.1| gp23 [Burkholderia phage KS10] gi|198035991|emb|CAR51884.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia J2315] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ +++K L++ + + V + N I + +S F TF V + +R G Sbjct: 1 MNKSQLIDAVAKNAELTKAQAAQSVEAVLNAIQLGLQEDGDVALSGFGTFAVAARKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + ++I + V FK LK + Sbjct: 61 RNPATGESIQIAASKAVKFKPGKALKDAVN 90 >gi|78357101|ref|YP_388550.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219506|gb|ABB38855.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+++ L++ ++ R + + D V+ + ++ F TF V+ + R G Sbjct: 1 MTKADLVEKIAEKANLTKANAERSLNAFLESVEDVLVKEGKLTLTGFGTFMVETRQERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I +VV F+ +LK + Sbjct: 61 RNPRTGDPIVIPAAKVVKFRPGKLLKDAVK 90 >gi|145638882|ref|ZP_01794490.1| integration host factor alpha-subunit [Haemophilus influenzae PittII] gi|145271854|gb|EDK11763.1| integration host factor alpha-subunit [Haemophilus influenzae PittII] gi|301170051|emb|CBW29655.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus influenzae 10810] gi|309750859|gb|ADO80843.1| Integration host factor, alpha subunit [Haemophilus influenzae R2866] Length = 96 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94 >gi|255994801|ref|ZP_05427936.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989] gi|255993514|gb|EEU03603.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989] Length = 92 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ G ++KD+ + + + ++ ++GE +++ F TF + + +R G Sbjct: 1 MNKADLVAVIAEKTGFTKKDAEATINAFVSTVEEALIKGEKVQLIGFGTFEARDRKARKG 60 Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95 RN + + +KI + VFKA LK + Sbjct: 61 RNPRNPGEVIKIPASKAPVFKAGKALKAAVNK 92 >gi|325915996|ref|ZP_08178289.1| integration host factor, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325537806|gb|EGD09509.1| integration host factor, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 103 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMADTAD 103 >gi|124267145|ref|YP_001021149.1| nucleoid protein Hbs [Methylibium petroleiphilum PM1] gi|124259920|gb|ABM94914.1| bacterial nucleoid protein Hbs [Methylibium petroleiphilum PM1] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K+ +S+ +TR + L + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKQADISKAAATRALEALIGGVRTTLKKGGSVSLVGFGTFAVTKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALKDALN 90 >gi|58038619|ref|YP_190583.1| integration host factor beta-subunit [Gluconobacter oxydans 621H] gi|58001033|gb|AAW59927.1| Integration host factor beta-subunit [Gluconobacter oxydans 621H] Length = 101 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ L +D R V +F+EI + RG+ +++ F F +++ +R Sbjct: 1 MTRSELIAELAAAYPHLLTRDIERIVHAVFDEIGAALARGDRVELRGFGAFLPRERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T V ++ + V FK L++R+ + RK Sbjct: 61 GRNPRTGDVVPVEEKSVPFFKVGKELRERVNQRLSTRKNGD 101 >gi|302383009|ref|YP_003818832.1| integration host factor, subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302193637|gb|ADL01209.1| integration host factor, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 102 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 63/98 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+TR+DL +++ +E GLSR++ + V I +S +G+ +K+S F F V++K +R Sbjct: 5 QTLTRADLCEAVLEEVGLSRQECSSLVERTLELIVESLEQGQTVKLSGFGVFQVREKSAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +GRN +T + I+PRRV+ F+AS I+K R+ G Sbjct: 65 MGRNPKTGEPAAINPRRVISFRASQIMKSRVHGATNGA 102 >gi|217976838|ref|YP_002360985.1| integration host factor, alpha subunit [Methylocella silvestris BL2] gi|217502214|gb|ACK49623.1| integration host factor, alpha subunit [Methylocella silvestris BL2] Length = 112 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 44/95 (46%), Positives = 63/95 (66%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR DL +S+ + GLSRK+S V + NE+ D+ GE +K+SSF +F V+ K Sbjct: 12 GRTVTRVDLAESVYRCVGLSRKESAALVQMVLNELSDALAEGETVKLSSFGSFVVRSKSE 71 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T EV I RRV+VFK SS+LK R+ + Sbjct: 72 RIGRNPKTGIEVPITQRRVLVFKPSSVLKARVNGE 106 >gi|134095741|ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas arsenicoxydans] gi|152980763|ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp. Marseille] gi|166918551|sp|A4G858|IHFB_HERAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918552|sp|A6T1G0|IHFB_JANMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|133739644|emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas arsenicoxydans] gi|151280840|gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp. Marseille] Length = 101 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ + L KD+ V T+ + + D+ G+ I+I F +F + + R+ Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN ++ +V + +RV FK L++R+ D M G+ +D Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERV-DAMVGQPIIED 101 >gi|326799514|ref|YP_004317333.1| histone family protein DNA-binding protein [Sphingobacterium sp. 21] gi|326550278|gb|ADZ78663.1| histone family protein DNA-binding protein [Sphingobacterium sp. 21] Length = 113 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 54/99 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+ ++DL+ I+ + G+++ + + ++++ N + + +GE++ + F TF V Q+ + Sbjct: 15 SITMNKADLITKIAADAGITKVQAEKALSSITNSVTTTLKKGESVSLIGFGTFTVGQRAA 74 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 R GRN T +KI +V F+ L++ + + Sbjct: 75 RSGRNPNTGAVIKIKATKVPKFRPGKSLREAVASAKTKK 113 >gi|251792548|ref|YP_003007274.1| integration host factor subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533941|gb|ACS97187.1| integration host factor, alpha subunit [Aggregatibacter aphrophilus NJ8700] Length = 98 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F LS++++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRSRVEK 93 >gi|53720124|ref|YP_109110.1| integration host factor subunit beta [Burkholderia pseudomallei K96243] gi|53724786|ref|YP_102240.1| integration host factor subunit beta [Burkholderia mallei ATCC 23344] gi|76810828|ref|YP_334371.1| integration host factor subunit beta [Burkholderia pseudomallei 1710b] gi|121598535|ref|YP_993873.1| integration host factor subunit beta [Burkholderia mallei SAVP1] gi|124385018|ref|YP_001026936.1| integration host factor subunit beta [Burkholderia mallei NCTC 10229] gi|126441395|ref|YP_001059900.1| integration host factor subunit beta [Burkholderia pseudomallei 668] gi|126451382|ref|YP_001079777.1| integration host factor subunit beta [Burkholderia mallei NCTC 10247] gi|126452191|ref|YP_001067189.1| integration host factor subunit beta [Burkholderia pseudomallei 1106a] gi|134277133|ref|ZP_01763848.1| integration host factor, beta subunit [Burkholderia pseudomallei 305] gi|166999733|ref|ZP_02265567.1| integration host factor, beta subunit [Burkholderia mallei PRL-20] gi|167720665|ref|ZP_02403901.1| integration host factor subunit beta [Burkholderia pseudomallei DM98] gi|167739652|ref|ZP_02412426.1| integration host factor subunit beta [Burkholderia pseudomallei 14] gi|167816857|ref|ZP_02448537.1| integration host factor subunit beta [Burkholderia pseudomallei 91] gi|167825257|ref|ZP_02456728.1| integration host factor subunit beta [Burkholderia pseudomallei 9] gi|167846761|ref|ZP_02472269.1| integration host factor subunit beta [Burkholderia pseudomallei B7210] gi|167895349|ref|ZP_02482751.1| integration host factor subunit beta [Burkholderia pseudomallei 7894] gi|167903735|ref|ZP_02490940.1| integration host factor subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167911984|ref|ZP_02499075.1| integration host factor subunit beta [Burkholderia pseudomallei 112] gi|167919975|ref|ZP_02507066.1| integration host factor subunit beta [Burkholderia pseudomallei BCC215] gi|217420526|ref|ZP_03452031.1| integration host factor, beta subunit [Burkholderia pseudomallei 576] gi|237813294|ref|YP_002897745.1| integration host factor, beta subunit [Burkholderia pseudomallei MSHR346] gi|238561682|ref|ZP_00441665.2| integration host factor, beta subunit [Burkholderia mallei GB8 horse 4] gi|242317605|ref|ZP_04816621.1| integration host factor, beta subunit [Burkholderia pseudomallei 1106b] gi|254177019|ref|ZP_04883676.1| integration host factor, beta subunit [Burkholderia mallei ATCC 10399] gi|254181090|ref|ZP_04887688.1| integration host factor, beta subunit [Burkholderia pseudomallei 1655] gi|254191994|ref|ZP_04898494.1| integration host factor, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195591|ref|ZP_04902018.1| integration host factor, beta subunit [Burkholderia pseudomallei S13] gi|254203924|ref|ZP_04910284.1| integration host factor, beta subunit [Burkholderia mallei FMH] gi|254208904|ref|ZP_04915252.1| integration host factor, beta subunit [Burkholderia mallei JHU] gi|254258262|ref|ZP_04949316.1| integration host factor, beta subunit [Burkholderia pseudomallei 1710a] gi|254360041|ref|ZP_04976311.1| integration host factor, beta subunit [Burkholderia mallei 2002721280] gi|81685156|sp|Q62M28|IHFB_BURMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81690265|sp|Q63S07|IHFB_BURPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123598384|sp|Q3JPY2|IHFB_BURP1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709777|sp|A3MHP1|IHFB_BURM7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709778|sp|A2S4R7|IHFB_BURM9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709779|sp|A1V6M0|IHFB_BURMS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709780|sp|A3NXW8|IHFB_BURP0 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709781|sp|A3NC29|IHFB_BURP6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|52210538|emb|CAH36521.1| integration host factor beta-subunit [Burkholderia pseudomallei K96243] gi|52428209|gb|AAU48802.1| integration host factor, beta subunit [Burkholderia mallei ATCC 23344] gi|76580281|gb|ABA49756.1| integration host factor, beta subunit [Burkholderia pseudomallei 1710b] gi|121227345|gb|ABM49863.1| integration host factor, beta subunit [Burkholderia mallei SAVP1] gi|124293038|gb|ABN02307.1| integration host factor, beta subunit [Burkholderia mallei NCTC 10229] gi|126220888|gb|ABN84394.1| integration host factor, beta subunit [Burkholderia pseudomallei 668] gi|126225833|gb|ABN89373.1| integration host factor, beta subunit [Burkholderia pseudomallei 1106a] gi|126244252|gb|ABO07345.1| integration host factor, beta subunit [Burkholderia mallei NCTC 10247] gi|134250783|gb|EBA50862.1| integration host factor, beta subunit [Burkholderia pseudomallei 305] gi|147745436|gb|EDK52516.1| integration host factor, beta subunit [Burkholderia mallei FMH] gi|147750780|gb|EDK57849.1| integration host factor, beta subunit [Burkholderia mallei JHU] gi|148029281|gb|EDK87186.1| integration host factor, beta subunit [Burkholderia mallei 2002721280] gi|157987816|gb|EDO95581.1| integration host factor, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160698060|gb|EDP88030.1| integration host factor, beta subunit [Burkholderia mallei ATCC 10399] gi|169652337|gb|EDS85030.1| integration host factor, beta subunit [Burkholderia pseudomallei S13] gi|184211629|gb|EDU08672.1| integration host factor, beta subunit [Burkholderia pseudomallei 1655] gi|217395938|gb|EEC35955.1| integration host factor, beta subunit [Burkholderia pseudomallei 576] gi|237504544|gb|ACQ96862.1| integration host factor, beta subunit [Burkholderia pseudomallei MSHR346] gi|238524131|gb|EEP87566.1| integration host factor, beta subunit [Burkholderia mallei GB8 horse 4] gi|242140844|gb|EES27246.1| integration host factor, beta subunit [Burkholderia pseudomallei 1106b] gi|243064226|gb|EES46412.1| integration host factor, beta subunit [Burkholderia mallei PRL-20] gi|254216951|gb|EET06335.1| integration host factor, beta subunit [Burkholderia pseudomallei 1710a] Length = 107 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 GRN ++ ++V++ + V FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV-DGRAGEPLKNDEPED 105 >gi|116749538|ref|YP_846225.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116698602|gb|ABK17790.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ G+++ + + V + + GE + + F TF V + R G Sbjct: 1 MTKADLVSKIAGAGGITKAQAEKAVDGFVAAVSQALSTGEKVTLVGFGTFSVGSRSQREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++KI +VV FK L ++ Sbjct: 61 RNPRTGEKIKIPASKVVKFKPGKSLSDKVK 90 >gi|300112900|ref|YP_003759475.1| integration host factor subunit beta [Nitrosococcus watsonii C-113] gi|299538837|gb|ADJ27154.1| integration host factor, beta subunit [Nitrosococcus watsonii C-113] Length = 96 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ ++ ++ LS +D V L + + +GE I+I F +F + + R Sbjct: 1 MTKSGLIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++R+ Sbjct: 61 GRNPKTGDTVPLSSKYVPHFKPGKELRERV 90 >gi|269102377|ref|ZP_06155074.1| integration host factor beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162275|gb|EEZ40771.1| integration host factor beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 95 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + S++ LS K + + ++ + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEQMATTLEQGERIEIRGFGSFSLHFRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNAQVA 95 >gi|118580717|ref|YP_901967.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503427|gb|ABK99909.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 97 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ G S+K+S V T+F+ I + GE IKI+ F F VKQK R G Sbjct: 1 MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I RR++ FK S +LK I Sbjct: 61 RNPQTGETITIAARRILTFKPSQVLKNAIN 90 >gi|120610349|ref|YP_970027.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|326316509|ref|YP_004234181.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588813|gb|ABM32253.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|323373345|gb|ADX45614.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ +S+ + R + ++ + + +G + + F TF V ++ +R G Sbjct: 1 MNKSELIEQIATNADISKAAAARALESMIESVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDTIKIKAAKVPKFRPGKALKDALN 90 >gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like DNA-binding protein) [Janthinobacterium sp. Marseille] gi|151283320|gb|ABR91730.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding protein) [Janthinobacterium sp. Marseille] Length = 90 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ +S+ + R + ++ + + + ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAGSADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FK LK + Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90 >gi|121602248|ref|YP_989618.1| integration host factor subunit beta [Bartonella bacilliformis KC583] gi|120614425|gb|ABM45026.1| integration host factor, beta subunit [Bartonella bacilliformis KC583] Length = 92 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++ L ++D V T+F EI + +G I++ F F VK + +R Sbjct: 1 MIKSELIQIIARRNPHLLQRDVENIVNTVFEEISIALAKGHRIELRGFGAFSVKNRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWVPSFKTGKELRDRLNQ 92 >gi|319941268|ref|ZP_08015599.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319805189|gb|EFW02012.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 91 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +++++ GLS+ D+ + + F + + +G+A++I F F V +R G Sbjct: 1 MNKTELTAAVAQKAGLSKSDAAKVLGAFFETVSEELSKGQAVQIIGFGNFEVADYKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I + F A S LKK + Sbjct: 61 RNPQTGAVLEIPAGKRPKFTAGSALKKAVAG 91 >gi|313891625|ref|ZP_07825232.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E] gi|329122095|ref|ZP_08250703.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965] gi|313119903|gb|EFR43088.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E] gi|327466902|gb|EGF12418.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965] Length = 92 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ +++KD+ + V + + I D+ V+GE +++ F TF V+++ +R G Sbjct: 1 MNKTELITAVAQKAEMTKKDAEKAVKAVIDVISDAMVKGEKVQLIGFGTFEVRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + +KI + F+ S LK+++ Sbjct: 61 HNPSTQKPIKIPASKAPAFRVSKQLKEKVN 90 >gi|87123689|ref|ZP_01079539.1| DNA binding protein HU [Synechococcus sp. RS9917] gi|88807469|ref|ZP_01122981.1| DNA binding protein HU [Synechococcus sp. WH 7805] gi|116073586|ref|ZP_01470848.1| DNA binding protein HU [Synechococcus sp. RS9916] gi|148240264|ref|YP_001225651.1| DNA-binding protein HU [Synechococcus sp. WH 7803] gi|86168258|gb|EAQ69515.1| DNA binding protein HU [Synechococcus sp. RS9917] gi|88788683|gb|EAR19838.1| DNA binding protein HU [Synechococcus sp. WH 7805] gi|116068891|gb|EAU74643.1| DNA binding protein HU [Synechococcus sp. RS9916] gi|147848803|emb|CAK24354.1| DNA-binding protein HU [Synechococcus sp. WH 7803] Length = 91 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++KI +RV F A + K R+ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKMFKDRVQG 91 >gi|325521368|gb|EGD00211.1| histone family protein DNA-binding protein [Burkholderia sp. TJI49] Length = 92 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+++ V + + I D+ RGE++++ F F Q+ +R G Sbjct: 1 MNKQELIDAVATGAGVSKTDASKTVQAVLDAITDAVSRGESVQLIGFGAFSQGQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+ I V F A K + Sbjct: 61 RNPTTGAEIAIPAANTVKFTAGKAFKDGVN 90 >gi|92114274|ref|YP_574202.1| integration host factor, beta subunit [Chromohalobacter salexigens DSM 3043] gi|123387402|sp|Q1QVK5|IHFB_CHRSD RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91797364|gb|ABE59503.1| integration host factor, beta subunit [Chromohalobacter salexigens DSM 3043] Length = 98 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ ++ LS K+ V + +I S G ++I F +F + + R Sbjct: 1 MTKSELIEQIAIRQPELSAKEVEAAVKIILEDITQSLSSGGRVEIRGFGSFSLHFREPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V + + V FK L++++ Sbjct: 61 GRNPKTGDPVDLQGKYVPHFKPGKELREQVNAS 93 >gi|114770171|ref|ZP_01447709.1| integration host factor beta subunit [alpha proteobacterium HTCC2255] gi|114549008|gb|EAU51891.1| integration host factor beta subunit [alpha proteobacterium HTCC2255] Length = 93 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ + L ++D R + T+F+EI D+ G +++ F +F VKQ+ +R Sbjct: 1 MIRSELVEKIAAENPHLFQRDIERIIGTVFDEIIDAMSNGNRVELRGFGSFSVKQREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FK +L+ R+ D Sbjct: 61 GRNPRTGETVDVEEKHVPFFKTGKLLRDRLNDS 93 >gi|296447327|ref|ZP_06889255.1| integration host factor, beta subunit [Methylosinus trichosporium OB3b] gi|296255192|gb|EFH02291.1| integration host factor, beta subunit [Methylosinus trichosporium OB3b] Length = 96 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ G L ++D VTT+ +EI + RG+ +++ F F VK++ +R Sbjct: 1 MIKSELIQRIASRNGHLYQRDVETIVTTILDEIALALARGDRVELRGFGAFSVKRREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T ++V ++ + V FK +++R+ + G Sbjct: 61 GRNPRTGEQVSVEEKSVPFFKTGKEMRERLNETSNG 96 >gi|291544066|emb|CBL17175.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. 18P13] Length = 91 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLVK++S++ +KD+ + T+ + I D+ +GE ++I F TF V+++G + Sbjct: 1 MTKADLVKAVSEKANCPKKDAEMAINTVIDCITDAVAQGEKVQIVGFGTFEVRERGEKKC 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T +E+ ++ VFKA LK + Sbjct: 61 KNPRTGEEMITPAKKAPVFKAGKALKDAVNK 91 >gi|221067986|ref|ZP_03544091.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|221068049|ref|ZP_03544154.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|220713009|gb|EED68377.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] gi|220713072|gb|EED68440.1| histone family protein DNA-binding protein [Comamonas testosteroni KF-1] Length = 90 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL++ ISK +S++ + R ++ + I + +G+ ++I F TF V ++ R G Sbjct: 1 MNKSDLIEHISKSAEVSKQAADRALSATLDGIRQALKKGKVVQIIGFGTFSVGRRAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++V I RV FK LK + Sbjct: 61 RNPRTGEKVTIAATRVAKFKPGKHLKDAVN 90 >gi|307729641|ref|YP_003906865.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|307584176|gb|ADN57574.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] Length = 90 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ +S+ + R + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAQQAEISKAAAGRALEAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90 >gi|319789111|ref|YP_004150744.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] gi|317113613|gb|ADU96103.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] Length = 99 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 58/99 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+LV +I+++ G+ +KD+ + + ++ +GE ++I F TF +K++ RV Sbjct: 1 MTKSELVAAIAEKAGIRKKDAEAALNAFIAVVTEALKKGEKVEIRGFGTFLMKERAQRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN +T ++V + P+ V FK LK+ +++ ++ Sbjct: 61 RNPKTGEKVTVPPKLVPAFKPGKDLKEATEQELKKKRKK 99 >gi|254466998|ref|ZP_05080409.1| integration host factor, beta subunit [Rhodobacterales bacterium Y4I] gi|206687906|gb|EDZ48388.1| integration host factor, beta subunit [Rhodobacterales bacterium Y4I] Length = 94 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D R V T+F E+ ++ RG+ +++ F F VK++ SRV Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMARGDRVELRGFGAFSVKKRDSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNG 92 >gi|126215723|sp|Q47GF4|IHFA1_DECAR RecName: Full=Integration host factor subunit alpha 1; Short=IHF-alpha 1 Length = 105 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 53/95 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++DL + +S E G + +++ V F E+ D RGE IK++ F F ++ K R Sbjct: 2 TITKADLAEHLSNEIGFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +E+ I RRVV F AS LK + Sbjct: 62 GRNPKTGEEIPITARRVVTFHASGCLKSAVESSPN 96 >gi|298293882|ref|YP_003695821.1| integration host factor subunit beta [Starkeya novella DSM 506] gi|296930393|gb|ADH91202.1| integration host factor, beta subunit [Starkeya novella DSM 506] Length = 97 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + +EI + RG+ +++ F F VK + +R Sbjct: 1 MIKSELVQRIAEANPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V +D + V FK +++R+ + + Sbjct: 61 GRNPRTGAHVAVDGKAVPYFKTGKEMRERLNNGV 94 >gi|282882471|ref|ZP_06291092.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B] gi|300814663|ref|ZP_07094914.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297613|gb|EFA90088.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B] gi|300511282|gb|EFK38531.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 92 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV SI+ + L++KD+ + + + ++ +GE +++ F TF V+Q+ +R G Sbjct: 1 MNKQELVASIATKSSLTKKDAEKALNGFLASVEEALAKGEKVQLVGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E +KI + VF++ LK+ + Sbjct: 61 RNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92 >gi|217976340|ref|YP_002360487.1| integration host factor, beta subunit [Methylocella silvestris BL2] gi|254803537|sp|B8EMZ0|IHFB_METSB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|217501716|gb|ACK49125.1| integration host factor, beta subunit [Methylocella silvestris BL2] Length = 96 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ L +D + V + +EI ++ RG+ +++ F F VK + +RV Sbjct: 1 MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITNALSRGDRVELRGFGAFSVKHRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V +D + V FK +++R+ + + Sbjct: 61 GRNPRTGAHVSVDEKVVPFFKTGKEMRERLNNGV 94 >gi|330814759|ref|YP_004362934.1| histone family protein DNA-binding protein [Burkholderia gladioli BSR3] gi|327374751|gb|AEA66102.1| histone family protein DNA-binding protein [Burkholderia gladioli BSR3] Length = 92 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+ + V + + I ++ RGE++++ F F Q+ +R G Sbjct: 1 MNKQELIDAVAASVGVSKTDAGKTVQAVLDVITEAVGRGESVQLIGFGAFSQGQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+ I V F A K + Sbjct: 61 RNPSTGAEIAIPAANTVKFTAGKPFKDVVN 90 >gi|327479102|gb|AEA82412.1| HU family DNA-binding protein [Pseudomonas stutzeri DSM 4166] Length = 90 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ LS+ + R + + +EI ++ R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q V I V FK +LK + Sbjct: 61 KNPQTGQPVTIKASNTVAFKPGKMLKDAVN 90 >gi|225023835|ref|ZP_03713027.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC 23834] gi|224943309|gb|EEG24518.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC 23834] Length = 100 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + ++ +S+ D+ V F EI + RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSNISKNDAKEIVELFFEEIRATLERGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGKEVPITARRVVTFHASQKLKGMVE 93 >gi|108760828|ref|YP_631695.1| integration host factor subunit beta [Myxococcus xanthus DK 1622] gi|27804850|gb|AAO22888.1| hypothetical protein [Myxococcus xanthus] gi|108464708|gb|ABF89893.1| integration host factor, beta subunit [Myxococcus xanthus DK 1622] Length = 127 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ I + + R++ V +F E+ + + G I++ F F V+ + +R Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN +T Q V + RR + F A L++R+ D P G Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAPPAMAASPVPDT--PPGE 108 >gi|52425144|ref|YP_088281.1| HimA protein [Mannheimia succiniciproducens MBEL55E] gi|81691393|sp|Q65TL4|IHFA_MANSM RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|52307196|gb|AAU37696.1| HimA protein [Mannheimia succiniciproducens MBEL55E] Length = 98 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L ++ ++ GL++ ++ V F EI + +G +K+S F F +++K SR Sbjct: 2 TLTKVELADNLIEKHGLNKSEAKALVEDFFEEIRVALEKGNDVKLSGFGNFELREKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRARVEK 93 >gi|260062638|ref|YP_003195718.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] gi|88784205|gb|EAR15375.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] Length = 90 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVESSLKKGNRVSLVGFGSWSVSRRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + + I + VV FKA S L + Sbjct: 61 RNPSTGKTIHIPAKNVVKFKAGSELGDAVN 90 >gi|94309668|ref|YP_582878.1| integration host factor subunit beta [Cupriavidus metallidurans CH34] gi|123383988|sp|Q1LQG7|IHFB_RALME RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|93353520|gb|ABF07609.1| integration host factor beta subunit [Cupriavidus metallidurans CH34] Length = 135 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + ++ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + +RV FKA L++R+ Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90 >gi|83951656|ref|ZP_00960388.1| integration host factor, beta subunit [Roseovarius nubinhibens ISM] gi|83836662|gb|EAP75959.1| integration host factor, beta subunit [Roseovarius nubinhibens ISM] Length = 94 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ + L ++D + V T+FNEI D+ +G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIADENPHLFQRDVEKIVNTIFNEITDAMAKGNRVELRGFGAFSVKKRDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V+++ + V FK +L+ R+ + Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRLNGN 93 >gi|148654111|ref|YP_001281204.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] gi|148573195|gb|ABQ95254.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] Length = 106 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 62/95 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++T+T++D++ + +FG +R+ V + F+EI D+ V G+ +K+S F F +K K S Sbjct: 8 TQTLTKADIIDHLVVKFGFTRQQGRMLVDSFFDEIYDNLVGGKDVKLSGFGNFILKDKKS 67 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T +EV+I RRVV FKA L++++ + Sbjct: 68 RPGRNPKTGEEVEISARRVVTFKAGQKLRRQVDES 102 >gi|313892973|ref|ZP_07826550.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str. F0412] gi|313442326|gb|EFR60741.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str. F0412] Length = 99 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 55/99 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + V +F+ + + G +++ F TF V+++ +R G Sbjct: 1 MNKTELIASVAQKTELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN Q + + I + FKA LK+++ ++ Sbjct: 61 RNPQNGKTITIAASKSPAFKAGKGLKEQVNATKAKKRKK 99 >gi|149916117|ref|ZP_01904639.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b] gi|149809972|gb|EDM69821.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b] Length = 94 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I++E L ++D R V T+FNEI ++ G +++ F F VK++ +R Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFNEITNAMAEGNRVELRGFGAFSVKRRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVYVEEKHVPFFKTGKLLRDRLNG 92 >gi|149911612|ref|ZP_01900224.1| integration host factor alpha subunit [Moritella sp. PE36] gi|149805333|gb|EDM65346.1| integration host factor alpha subunit [Moritella sp. PE36] Length = 97 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+ +++ + GLS+++S V F EI S E +KIS F F ++ KG R Sbjct: 2 ALTKADIAETLFNDVGLSKRESKEMVEAFFEEIRLSLEVNEQVKISGFGNFDLRDKGERP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++ I RRVV FK LK ++ Sbjct: 62 GRNPKTGEDIPITARRVVTFKPGQKLKAKVE 92 >gi|121602866|ref|YP_988943.1| integration host factor subunit alpha [Bartonella bacilliformis KC583] gi|166918498|sp|A1USJ0|IHFA_BARBK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|120615043|gb|ABM45644.1| integration host factor, alpha subunit [Bartonella bacilliformis KC583] Length = 103 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 46/100 (46%), Positives = 68/100 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR+DL ++ ++ GLS +S V + +EI DS V+GE +K+S FATF V+ K Sbjct: 3 GRTVTRADLASAVCRKVGLSYTESAALVELILSEISDSLVKGEMVKLSCFATFQVRSKSR 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R+GRN +T E I PRRVV FKA++ILK+RI+D ++ Sbjct: 63 RIGRNPKTGIEAPIPPRRVVTFKAANILKQRILDVHCAKQ 102 >gi|13472793|ref|NP_104360.1| integration host factor subunit beta [Mesorhizobium loti MAFF303099] gi|260460500|ref|ZP_05808751.1| integration host factor, beta subunit [Mesorhizobium opportunistum WSM2075] gi|319781467|ref|YP_004140943.1| integration host factor, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|21362613|sp|Q98GS0|IHFB_RHILO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|14023540|dbj|BAB50146.1| integration host factor beta chain [Mesorhizobium loti MAFF303099] gi|259033605|gb|EEW34865.1| integration host factor, beta subunit [Mesorhizobium opportunistum WSM2075] gi|317167355|gb|ADV10893.1| integration host factor, beta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 94 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L +D V +F+EI D+ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V+++ + V FK L++R+ Sbjct: 61 GRNPRTGESVEVEEKWVPFFKTGKELRERLNGG 93 >gi|289671205|ref|ZP_06492280.1| integration host factor subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 103 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDWIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMSDATD 103 >gi|89069006|ref|ZP_01156387.1| integration host factor beta subunit [Oceanicola granulosus HTCC2516] gi|89045375|gb|EAR51440.1| integration host factor beta subunit [Oceanicola granulosus HTCC2516] Length = 93 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ I+ L ++D + V T+F+ I + G+ +++ F F VK++ +R+ Sbjct: 1 MIRSELIQKIADDNPHLYQRDVEKIVNTVFDRIIGAMANGDRVELRGFGAFSVKRREARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ D Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLND 92 >gi|298208491|ref|YP_003716670.1| probable DNA-binding protein HU [Croceibacter atlanticus HTCC2559] gi|83848414|gb|EAP86283.1| probable DNA-binding protein HU [Croceibacter atlanticus HTCC2559] Length = 90 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++++ G+S+ + + + + I +G+ I + F ++ V ++ +R G Sbjct: 1 MNKSDLIDAMAEDAGVSKAAAKKALESFLGHIEKGLKKGDRISLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAVN 90 >gi|297568841|ref|YP_003690185.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296924756|gb|ADH85566.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 95 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++DL++ + + LS+ +T V + DS GE + +S F F VKQK SR Sbjct: 2 TLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +E+ + PRRV+ FK S +L++R+ Sbjct: 62 GRNPQTGEELMLAPRRVITFKPSGLLRQRVNG 93 >gi|114328684|ref|YP_745841.1| integration host factor subunit beta [Granulibacter bethesdensis CGDNIH1] gi|122326362|sp|Q0BQI4|IHFB_GRABC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114316858|gb|ABI62918.1| integration host factor beta-subunit [Granulibacter bethesdensis CGDNIH1] Length = 107 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 1/105 (0%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ S+ + L+ +D V+T+F+EI ++ RG +++ F F +K++ +RV Sbjct: 1 MTKSELIASLKADNPHLTERDVETIVSTIFDEISNALARGARVELRGFGAFTIKRRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 GRN +T + V +D + V FKA L++R+ + R + D + Sbjct: 61 GRNPRTGETVSVDEKVVPFFKAGKELRERVNNGTRKNGGSADAAS 105 >gi|304415426|ref|ZP_07396077.1| HU DNA-binding transcriptional regulator alpha subunit [Candidatus Regiella insecticola LSR1] gi|304282725|gb|EFL91237.1| HU DNA-binding transcriptional regulator alpha subunit [Candidatus Regiella insecticola LSR1] Length = 141 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 46/94 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++++ G S+ D+ V + + I ++ GE ++I F TF ++ +R G Sbjct: 1 MNKTQLIDKVAEKIGSSKTDARAAVDAILDSITEALEEGEQMQIVGFGTFKTSKRQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT E++I V F LK + Sbjct: 61 RNPQTGAEIQIPATTVATFTVGKELKDAVKSSSE 94 >gi|120435797|ref|YP_861483.1| histone-like DNA-binding protein [Gramella forsetii KT0803] gi|117577947|emb|CAL66416.1| histone-like bacterial DNA-binding protein [Gramella forsetii KT0803] Length = 90 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ G+S+ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTDLIDAMAENAGISKAAAKKALESFLENVEKSLKKGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA + L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGADLQKAVN 90 >gi|158321657|ref|YP_001514164.1| histone family protein DNA-binding protein [Alkaliphilus oremlandii OhILAs] gi|158141856|gb|ABW20168.1| histone family protein DNA-binding protein [Alkaliphilus oremlandii OhILAs] Length = 92 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++KD+ + + + ++ G+ +++ F TF V+++ R G Sbjct: 1 MNKAELVAKMAEKAQLTKKDTELALNSFMETVEEALATGDKVQLVGFGTFEVRERKPRQG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + ++ + I + VFKA LK+++ Sbjct: 61 RNPRNPEQVIDIPASKAPVFKAGKTLKEQMNK 92 >gi|332704210|ref|ZP_08424298.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332554359|gb|EGJ51403.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 90 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV IS++ +S+ D+ R + + + + V + ++ F TF V+++ R G Sbjct: 1 MTKADLVAKISEKAAISKADAERSLNAFLDAVGSTLVGEGKLTLTGFGTFAVEERKERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +VV F+ +LK + Sbjct: 61 RNPRTGEEIKIPATKVVKFRPGKLLKDAVK 90 >gi|46201963|ref|ZP_00054041.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++ GLS+ + + F I + G+ +++ F +F V Q+ ++ G Sbjct: 1 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +KI + F A LK + Sbjct: 61 RNPRTGATIKIAASKAPKFTAGKGLKDAVNG 91 >gi|289450416|ref|YP_003475021.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184963|gb|ADC91388.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 91 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+DL+ SI+K L++K S + + N I D+ ++G+ + ++ F TF V+ + +R G Sbjct: 1 MKRNDLIASIAKAANLTKKSSEEALDAVLNTISDALIKGDKVILTGFGTFEVRARAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T E+ I + FK LK+++ Sbjct: 61 RNPATKTEIMIPASKSPAFKPGKRLKEQVNK 91 >gi|315634292|ref|ZP_07889579.1| integration host factor subunit alpha [Aggregatibacter segnis ATCC 33393] gi|315476882|gb|EFU67627.1| integration host factor subunit alpha [Aggregatibacter segnis ATCC 33393] Length = 98 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++F LS++++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKFHLSKREAKDLVESFFEEIRIALETGNDVKLSGFGNFELRDKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVVFKPGQKLRNRVEK 93 >gi|300865210|ref|ZP_07110027.1| nucleoid protein Hbs [Oscillatoria sp. PCC 6506] gi|300336775|emb|CBN55177.1| nucleoid protein Hbs [Oscillatoria sp. PCC 6506] Length = 95 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + ++ I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLSAALESIMEAVSDGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++++I +V F A + K R+ Sbjct: 61 RNPKTGEKMEIPATKVPAFSAGKLFKDRVA 90 >gi|260914041|ref|ZP_05920514.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC 43325] gi|260631674|gb|EEX49852.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC 43325] Length = 98 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +L +++ ++ L+++D+ V F EI + GE +K+S F F ++ K SR Sbjct: 2 TLTKVELAENLIEKLNLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVV FK L+ R+ Sbjct: 62 GRNPKTGESVPVSARRVVSFKPGQKLRTRVEK 93 >gi|228969379|ref|ZP_04130226.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] gi|228790341|gb|EEM38081.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L K ++++ L++K++ + + I + E ++I F TF V+++ +R G Sbjct: 1 MNKTELTKVVAEKAELTQKEAAAATQAVLDTITTALANEEKVQILRFGTFEVRERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I + FKA LK + Sbjct: 61 RNPQTGEEMQIAASKAPAFKAGKELKDAVK 90 >gi|294013226|ref|YP_003546686.1| integration host factor alpha subunit [Sphingobium japonicum UT26S] gi|292676556|dbj|BAI98074.1| integration host factor alpha subunit [Sphingobium japonicum UT26S] Length = 98 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 61/93 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+++ GLSR ++ + ++ + + RGE +KISSF TF ++ K R+ Sbjct: 6 TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T EV I+PRRV+ F+AS ++ R+ Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRVASA 98 >gi|121727102|ref|ZP_01680276.1| integration host factor, beta subunit [Vibrio cholerae V52] gi|121630480|gb|EAX62872.1| integration host factor, beta subunit [Vibrio cholerae V52] Length = 92 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ + +++ LS K+ V + + + GE I+I F +F + + RV Sbjct: 1 MTKSXLIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91 >gi|56750450|ref|YP_171151.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301] gi|81299917|ref|YP_400125.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942] gi|56685409|dbj|BAD78631.1| DNA binding protein HU [Synechococcus elongatus PCC 6301] gi|81168798|gb|ABB57138.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942] Length = 91 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++ +++K + ++ + I ++ G+ + + F +F + + +R G Sbjct: 1 MNKGDLIDKVADRAHVTKKQAEHIISAALDTIIEAVSGGDKVTLVGFGSFEPRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T Q++KI +V F A + K+++ Sbjct: 61 RNPKTGQKMKIPATKVPAFSAGKLFKEKV 89 >gi|33865121|ref|NP_896680.1| DNA binding protein HU [Synechococcus sp. WH 8102] gi|33638805|emb|CAE07102.1| DNA binding protein HU [Synechococcus sp. WH 8102] Length = 91 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D + V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSMVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I +RV F A + K R+ Sbjct: 61 LNPKTGEKIAIPAKRVPAFTAGKMFKDRVQG 91 >gi|119505041|ref|ZP_01627117.1| hypothetical protein MGP2080_15169 [marine gamma proteobacterium HTCC2080] gi|119459023|gb|EAW40122.1| hypothetical protein MGP2080_15169 [marine gamma proteobacterium HTCC2080] Length = 98 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ I+ ++ LS KD V + + + ++ GE I+I F +F + + R Sbjct: 1 MTRSELIEKIASQQSQLSTKDVELAVKLMIDHMAETLSSGERIEIRGFGSFSLHYREPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T V ++ + V FK L++R+ ++ Sbjct: 61 GRNPKTGDSVALEGKHVPHFKPGKELRERVNRSLKA 96 >gi|315122317|ref|YP_004062806.1| integration host factor subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495719|gb|ADR52318.1| integration host factor subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 110 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 81/107 (75%), Positives = 93/107 (86%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KTITRSDL KSISK FGLSRKDST FVTT+FNEICDSA RGEAIKISSFATF V++KG Sbjct: 1 MNKTITRSDLAKSISKNFGLSRKDSTFFVTTVFNEICDSAARGEAIKISSFATFRVRKKG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RVGRNLQTNQEV I RRV+VFKAS +LKKRIMD++ +C ++D+ Sbjct: 61 PRVGRNLQTNQEVMIGSRRVMVFKASDVLKKRIMDELDNLECKEEDL 107 >gi|258645647|ref|ZP_05733116.1| DNA-binding protein HU [Dialister invisus DSM 15470] gi|260403011|gb|EEW96558.1| DNA-binding protein HU [Dialister invisus DSM 15470] Length = 100 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +++KDS + V + + I + V+G+ +++ F TF V+Q+ +R G Sbjct: 1 MNKTELISAVAQTAEMTKKDSEKAVKAVIDVISQALVKGDKVQLIGFGTFEVRQRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + +KI + ++ S LK+R+ Sbjct: 61 HNPATQKAIKIPASKSPAWRVSKQLKERVN 90 >gi|188577593|ref|YP_001914522.1| integration host factor subunit alpha [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522045|gb|ACD59990.1| integration host factor, alpha subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 92 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 50/85 (58%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + E GL+++++ FV F+ + D+ +G +K+S F F +++K R GRN +T Sbjct: 1 MAERLFDEVGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I R VV F+ LK+R+ Sbjct: 61 GEEIPISARTVVTFRPGQKLKERVE 85 >gi|291166397|gb|EFE28443.1| DNA-binding protein HU [Filifactor alocis ATCC 35896] Length = 93 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ L++KD + + + D+ V GE +++ F +F +++ R G Sbjct: 1 MNKAELVTKMAEKCNLTKKDMEVALNAFMSCVEDALVAGEKVQLVGFGSFETRERAEREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94 RN ++ +E +KI + VFKA LK+++ Sbjct: 61 RNPRSPEEVIKIPASKAPVFKAGKGLKEKVN 91 >gi|86356056|ref|YP_467948.1| integration host factor subunit beta [Rhizobium etli CFN 42] gi|116250186|ref|YP_766024.1| integration host factor subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|190890071|ref|YP_001976613.1| integration host factor beta-subunit protein [Rhizobium etli CIAT 652] gi|209547655|ref|YP_002279572.1| integration host factor subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241202813|ref|YP_002973909.1| integration host factor subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|123384964|sp|Q1MM94|IHFB_RHIL3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123765870|sp|Q2KD65|IHFB_RHIEC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709801|sp|B3PZE1|IHFB_RHIE6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709802|sp|B5ZN05|IHFB_RHILW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|86280158|gb|ABC89221.1| integration host factor beta-subunit protein [Rhizobium etli CFN 42] gi|115254834|emb|CAK05908.1| putative integration host factor beta subunit [Rhizobium leguminosarum bv. viciae 3841] gi|190695350|gb|ACE89435.1| integration host factor beta-subunit protein [Rhizobium etli CIAT 652] gi|209533411|gb|ACI53346.1| integration host factor, beta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240856703|gb|ACS54370.1| integration host factor, beta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 99 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V ++ + V FK L++R+ Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91 >gi|148260716|ref|YP_001234843.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5] gi|326403912|ref|YP_004283994.1| integration host factor beta subunit [Acidiphilium multivorum AIU301] gi|146402397|gb|ABQ30924.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5] gi|325050774|dbj|BAJ81112.1| integration host factor beta subunit [Acidiphilium multivorum AIU301] Length = 113 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ +++ + L+ D R VT +F+E+ + G +++ F F VKQ+ +R Sbjct: 1 MTRSELIAALAADHPHLTLADVERIVTAMFDEMTATLAAGGRVELRGFGAFSVKQRQARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + VK+D + V F+A L++ + M+ Sbjct: 61 GRNPRTGETVKVDEKTVPFFRAGRELREMVNAGMK 95 >gi|302878589|ref|YP_003847153.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302581378|gb|ADL55389.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 91 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G ++ + + + L I ++ +G++I + F TF V+++ +R G Sbjct: 1 MNRKELIDALATKTGSTKIVAEQNIAALIEVIGETLAKGDSISLVGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T E+KI +V FK + LK + Sbjct: 61 RNPKTGAELKIAASKVPAFKPGATLKSAVNK 91 >gi|46580205|ref|YP_011013.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120602409|ref|YP_966809.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46449622|gb|AAS96272.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120562638|gb|ABM28382.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311233808|gb|ADP86662.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 90 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ + L++ + R + + + D + ++ F TF V+ + R G Sbjct: 1 MTKADLVDKIAAKANLTKASAERSLNAFLDAVKDVLASEGKLTLTGFGTFAVESRQERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+KI +VV F+ LK + Sbjct: 61 RNPRTGAEIKIPASKVVKFRPGKTLKDAVK 90 >gi|21231632|ref|NP_637549.1| integration host factor subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768246|ref|YP_243008.1| integration host factor subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188991382|ref|YP_001903392.1| integration host factor subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|24418454|sp|Q8P8P6|IHFB_XANCP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81305779|sp|Q4UVD5|IHFB_XANC8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709818|sp|B0RSA5|IHFB_XANCB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|21113325|gb|AAM41473.1| integration host factor beta subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573578|gb|AAY48988.1| integration host factor beta subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167733142|emb|CAP51340.1| Integration host factor beta subunit [Xanthomonas campestris pv. campestris] Length = 103 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 GRN +T + V + + V FK L++R+ + + D Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERVSSVVPVDMVDAAD 103 >gi|83310091|ref|YP_420355.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82944932|dbj|BAE49796.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 110 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F + + G+ +++ F +F V + +R G Sbjct: 19 MNKSELIAAVADGANMTKADAASAIDAVFEAVTAAMKSGDDVRLVGFGSFSVSARPAREG 78 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + F A LK I Sbjct: 79 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 109 >gi|302381902|ref|YP_003817725.1| integration host factor subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302192530|gb|ADL00102.1| integration host factor, beta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 96 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ + L+ + R V + + D+ G +++ F F V+ + +R Sbjct: 1 MIKSELIEKLAAENTHLTHAEVERVVNVVLGRMTDAMASGGRVELRGFGAFSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + V FK+ L++R+ Sbjct: 61 GRNPRTGETVDVPAKAVPFFKSGKELRERLNAS 93 >gi|331005948|ref|ZP_08329294.1| Integration host factor beta subunit [gamma proteobacterium IMCC1989] gi|330420243|gb|EGG94563.1| Integration host factor beta subunit [gamma proteobacterium IMCC1989] Length = 102 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ LS KD V ++ + GE I++ F +F + + R+ Sbjct: 1 MTKSELIERMTDNQEQLSVKDVELAVKSMLEHMSQVLASGERIEVRGFGSFSLHYREPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN +T + V++ + V FK ++ R+ + + K Sbjct: 61 GRNPKTGEMVELKGKYVPHFKPGKEMRDRVNESIHQEKS 99 >gi|294624736|ref|ZP_06703402.1| integration host factor beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664332|ref|ZP_06729697.1| integration host factor beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600970|gb|EFF45041.1| integration host factor beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605898|gb|EFF49184.1| integration host factor beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 113 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 11 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 70 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 71 GRNPKTGESVALPGKHVPHFKPGKELRERV 100 >gi|167646994|ref|YP_001684657.1| integration host factor subunit alpha [Caulobacter sp. K31] gi|189044696|sp|B0T0T0|IHFA_CAUSK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|167349424|gb|ABZ72159.1| integration host factor, alpha subunit [Caulobacter sp. K31] Length = 100 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 63/96 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ +E GL+R+D V + + ++ +GE +K+S F F V+ K +R+ Sbjct: 5 TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRDKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + +I+PRRV+ F+AS ++K RI + G Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARIDRALGG 100 >gi|254491635|ref|ZP_05104814.1| DNA-binding protein HU [Methylophaga thiooxidans DMS010] gi|224463113|gb|EEF79383.1| DNA-binding protein HU [Methylophaga thiooxydans DMS010] Length = 95 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 52/93 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++ + + +L+ +++ +S+ + + V + + + + +G+ + + F TF V+++ + Sbjct: 3 NQAVNKYELIDAVAAAADISKAKAAQAVDGVTSAVTKALSKGDQVTLVGFGTFSVRERAA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +E+KI ++ FKA LK + Sbjct: 63 RTGRNPRTGEEIKIAAAKIPAFKAGKALKDAVN 95 >gi|304569686|ref|YP_009985.2| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] Length = 101 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++T+++LV+ I + GL ++ + + + D+ GE++ + F +F V + +R Sbjct: 10 SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 69 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +VV F +LK + Sbjct: 70 KGRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 101 >gi|294787803|ref|ZP_06753047.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC 29453] gi|294484096|gb|EFG31779.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC 29453] Length = 100 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + ++ +S+ D+ V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSSVSKNDAKEIVELFFEEIRTTLESGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93 >gi|126657689|ref|ZP_01728843.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|126620906|gb|EAZ91621.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] Length = 93 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV IS + L++K+++ + L + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEELVNMISAKTRLTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N QT Q + I V F A + K+++++ + Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKLFKEKVVESL 93 >gi|238022788|ref|ZP_04603214.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147] gi|237865991|gb|EEP67127.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147] Length = 120 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 2 SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + T+T+++L + ++ +S+ D+ V F EI + RGE IKIS F F ++ K Sbjct: 22 NMTLTKAELADILVEKVSSISKHDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKP 81 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +EV I RRVV F AS LK + Sbjct: 82 QRPGRNPKTGEEVAITARRVVTFHASQKLKGMVE 115 >gi|307294086|ref|ZP_07573930.1| integration host factor, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306880237|gb|EFN11454.1| integration host factor, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 98 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 61/93 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +S+++ GLSR ++ + ++ + + RGE +KISSF TF ++ K R+ Sbjct: 6 TLTRADLAESVNRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRM 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T EV I+PRRV+ F+AS ++ R+ Sbjct: 66 GRNPKTGVEVPIEPRRVLTFRASQTMRDRVASA 98 >gi|126727662|ref|ZP_01743494.1| integration host factor beta subunit [Rhodobacterales bacterium HTCC2150] gi|126703078|gb|EBA02179.1| integration host factor beta subunit [Rhodobacterales bacterium HTCC2150] Length = 94 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ + L ++D R V TLF EI ++ G+ +++ F F VKQ+ +R+ Sbjct: 1 MIRSELVQKIADENPQLFQRDVERIVNTLFEEIINALADGDRVELRGFGAFSVKQRDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN ++ + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRSGESVEVEAKNVPFFKTGKLLRDRLNG 92 >gi|326790215|ref|YP_004308036.1| histone family protein DNA-binding protein [Clostridium lentocellum DSM 5427] gi|326540979|gb|ADZ82838.1| histone family protein DNA-binding protein [Clostridium lentocellum DSM 5427] Length = 92 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV ++S + +S+KD+ + + + + + G I++ F TF V ++ RVG Sbjct: 1 MNKSELVAAMSAKAEISKKDAEKALKAFEDVVMEELQAGGKIQLVGFGTFEVTERKPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +TN+E+ I + FK LK + + Sbjct: 61 RNPKTNEEMPIPGGKAPKFKPGKALKDVVKGN 92 >gi|103486903|ref|YP_616464.1| integration host factor, alpha subunit [Sphingopyxis alaskensis RB2256] gi|122985051|sp|Q1GT91|IHFA_SPHAL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|98976980|gb|ABF53131.1| integration host factor, alpha subunit [Sphingopyxis alaskensis RB2256] Length = 97 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 59/92 (64%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+D+ I+++ GLSR +S V ++ + + D+ G+ +KIS F TF ++ K R+ Sbjct: 5 TLTRADIASRINQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQRI 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T EV I PRRV+ F+AS ++ R+ Sbjct: 65 GRNPKTGVEVPILPRRVMTFRASQSMRARVAG 96 >gi|311233014|gb|ADP85868.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 132 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++T+++LV+ I + GL ++ + + + D+ GE++ + F +F V + +R Sbjct: 41 SMTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAAR 100 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +VV F +LK + Sbjct: 101 KGRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 132 >gi|21243032|ref|NP_642614.1| integration host factor subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|24418455|sp|Q8PK78|IHFB_XANAC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|21108541|gb|AAM37150.1| integration host factor beta subunit [Xanthomonas axonopodis pv. citri str. 306] Length = 103 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90 >gi|115350978|ref|YP_772817.1| integration host factor subunit beta [Burkholderia ambifaria AMMD] gi|134295080|ref|YP_001118815.1| integration host factor subunit beta [Burkholderia vietnamiensis G4] gi|170698414|ref|ZP_02889487.1| integration host factor, beta subunit [Burkholderia ambifaria IOP40-10] gi|171316179|ref|ZP_02905403.1| integration host factor, beta subunit [Burkholderia ambifaria MEX-5] gi|172059983|ref|YP_001807635.1| integration host factor subunit beta [Burkholderia ambifaria MC40-6] gi|122323724|sp|Q0BH90|IHFB_BURCM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709772|sp|B1YV36|IHFB_BURA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709784|sp|A4JCH7|IHFB_BURVG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|115280966|gb|ABI86483.1| integration host factor, beta subunit [Burkholderia ambifaria AMMD] gi|134138237|gb|ABO53980.1| integration host factor, beta subunit [Burkholderia vietnamiensis G4] gi|170136667|gb|EDT04922.1| integration host factor, beta subunit [Burkholderia ambifaria IOP40-10] gi|171098688|gb|EDT43483.1| integration host factor, beta subunit [Burkholderia ambifaria MEX-5] gi|171992500|gb|ACB63419.1| integration host factor, beta subunit [Burkholderia ambifaria MC40-6] Length = 107 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V++ + V FK L++R+ D G DD Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADDP 103 >gi|114776313|ref|ZP_01451358.1| integration host factor, alpha subunit [Mariprofundus ferrooxydans PV-1] gi|114553143|gb|EAU55541.1| integration host factor, alpha subunit [Mariprofundus ferrooxydans PV-1] Length = 94 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 61/94 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++ + + + GL++K+S V ++ + I DS RGE +K+S F F V++K +R G Sbjct: 1 MTKAEIARIVHERVGLTKKESAEIVESVLDVIRDSLERGENVKVSGFGHFMVREKHARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T ++ I+PR VV F+AS +LK ++ + Sbjct: 61 RNPKTGTDITIEPRSVVTFRASPLLKDKLAEATE 94 >gi|121604539|ref|YP_981868.1| histone family protein DNA-binding protein [Polaromonas naphthalenivorans CJ2] gi|120593508|gb|ABM36947.1| histone family protein DNA-binding protein [Polaromonas naphthalenivorans CJ2] Length = 90 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I++ +S+ +TR + + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAQNADISKAAATRALESTISAVKATLKKGGSVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90 >gi|187478614|ref|YP_786638.1| DNA-binding protein Hu-beta [Bordetella avium 197N] gi|115423200|emb|CAJ49731.1| DNA-binding protein Hu-beta [Bordetella avium 197N] Length = 90 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ + +S+ + R + L + + +G + + F TF V + +R G Sbjct: 1 MNKTELIDHIASKADISKAAAGRTLDALIGAVKTTLKKGGTVTLVGFGTFAVSSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V F+ LK + Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALKDAVN 90 >gi|71736668|ref|YP_275803.1| integration host factor subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|123775050|sp|Q48FN3|IHFB_PSE14 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|71557221|gb|AAZ36432.1| integration host factor, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 98 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I GL S KD + T+ ++ G+ I+I F +F + + RV Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V +D + V FK L+ R+ +D Sbjct: 61 GRNPKTGRSVSLDGKFVPHFKPGKELRDRVNEDEE 95 >gi|253998814|ref|YP_003050877.1| integration host factor subunit beta [Methylovorus sp. SIP3-4] gi|313200901|ref|YP_004039559.1| integration host factor subunit beta [Methylovorus sp. MP688] gi|253985493|gb|ACT50350.1| integration host factor, beta subunit [Methylovorus sp. SIP3-4] gi|312440217|gb|ADQ84323.1| integration host factor, beta subunit [Methylovorus sp. MP688] Length = 94 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ GE I+I F +F + + R+ Sbjct: 1 MTKSELIANLAARFPQLVVKDAELSVKAIIDSMADNLASGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FKA L++R+ Sbjct: 61 GRNPKTGSKVQVPEKYVPHFKAGKELRERV 90 >gi|114327679|ref|YP_744836.1| integration host factor subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114315853|gb|ABI61913.1| integration host factor alpha-subunit [Granulibacter bethesdensis CGDNIH1] Length = 107 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 41/88 (46%), Positives = 58/88 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+ L ++I + GLSR DS + T+ + + GE++KIS F TF V+QKG R+ Sbjct: 3 TVTRAHLAETIYTQVGLSRNDSALLLETVLERMSSALEAGESVKISGFGTFSVRQKGRRI 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN +T EV I PRRV+VF+ S +LK Sbjct: 63 GRNPKTGIEVPIMPRRVLVFRPSQVLKA 90 >gi|121609650|ref|YP_997457.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] gi|121554290|gb|ABM58439.1| histone family protein DNA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 105 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ IS +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 16 VNKTELIEYISDNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 75 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 76 RNPRTGSAIKIKAAKVPKFRPGKALKDALN 105 >gi|331001373|ref|ZP_08324997.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] gi|329568632|gb|EGG50434.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] Length = 91 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+++++ + +S+ + R V + + I ++ G+ +++ F TF V ++ +R G Sbjct: 2 MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RNL+TN+ + I R+V F A LK + Sbjct: 62 RNLRTNKSIDIPARKVPKFVAGKNLKDVVE 91 >gi|218777883|ref|YP_002429201.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218759267|gb|ACL01733.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 91 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++ G+S+ D+ + V F+ + D+ GE ++I +F VK+ S G Sbjct: 1 MNKLELVSTLKNRAGISKTDAAKIVQIFFDSMADALAEGERVEIRGLCSFFVKEYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VKI P+++ FK LK+R+ Sbjct: 61 RNPKTGEPVKISPKKLPFFKCGKELKERV 89 >gi|282855424|ref|ZP_06264745.1| DNA-binding protein HU [Pyramidobacter piscolens W5455] gi|282586720|gb|EFB91967.1| DNA-binding protein HU [Pyramidobacter piscolens W5455] Length = 91 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ G+S+K + ++ F I + +G+ +++ F TF V+++ +RVG Sbjct: 1 MTKNDLINEVAANAGMSKKAAGEAISATFAAIEKALAKGDRVQLVGFGTFEVRKRAARVG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q + ++I ++V VF+A LK+++ Sbjct: 61 RNPQDPKKTIQIPAKKVPVFRAGKGLKEQVN 91 >gi|297538803|ref|YP_003674572.1| integration host factor subunit beta [Methylotenera sp. 301] gi|297258150|gb|ADI29995.1| integration host factor, beta subunit [Methylotenera sp. 301] Length = 93 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ GE I+I F +F + + R+ Sbjct: 1 MTKSELITLLAERFPQLVVKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FKA L++R+ Sbjct: 61 GRNPKTGSKVQVPEKHVPHFKAGKELRERV 90 >gi|158334333|ref|YP_001515505.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158304574|gb|ABW26191.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 91 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ + G+++K + ++ + I D+ G+ + + F +F + + +R G Sbjct: 1 MNKGELVDAIADKTGVTKKQADVTLSAAVDVIIDAVSHGDKVTLVGFGSFEPRDRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +++KI RV F A + K ++ Sbjct: 61 RNPQTGKKLKIPATRVPAFSAGKLFKDKVA 90 >gi|148241580|ref|YP_001226737.1| DNA-binding protein HU [Synechococcus sp. RCC307] gi|147849890|emb|CAK27384.1| DNA-binding protein HU [Synechococcus sp. RCC307] Length = 91 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ D ++ V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAARTELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFESRERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I ++V F A + K R+ Sbjct: 61 LNPKTGEKIAIPAKKVPAFTAGKMFKDRVQG 91 >gi|78222818|ref|YP_384565.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78194073|gb|ABB31840.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 96 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 51/96 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K L++ + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVDAVAKSAELTKAAADKAVNGVIEAVTAALKKGDKVTLVGFGSFEVATRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN QT +E+KI +V F+ LK + + + Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVAGAKKKK 96 >gi|163867319|ref|YP_001608513.1| integration host factor subunit beta [Bartonella tribocorum CIP 105476] gi|254803527|sp|A9IL25|IHFB_BART1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|161016960|emb|CAK00518.1| integration host factor beta chain [Bartonella tribocorum CIP 105476] Length = 92 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + G+ +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGDRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V +D + + FK L+ R+ Sbjct: 61 GRNPRTGEAVAVDEKWIPFFKTGKDLRDRLNQ 92 >gi|187477853|ref|YP_785877.1| integration host factor subunit beta [Bordetella avium 197N] gi|115422439|emb|CAJ48964.1| integration host factor beta-subunit [Bordetella avium 197N] Length = 119 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 61/108 (56%), Gaps = 3/108 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++S + L+ +D+ V T+ + + + G+ I+I F +F + Q+ RV Sbjct: 1 VTKSELIAALSARYPQLAARDTDLAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 GRN ++ ++V + ++V FKA L++R+ D+ G + D S Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV--DLAGNEAGGDSSNESS 106 >gi|303257389|ref|ZP_07343402.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|302859746|gb|EFL82824.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] Length = 90 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+++++ + +S+ + R V + + I ++ G+ +++ F TF V ++ +R G Sbjct: 1 MNKADLIEAVAIKCDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RNL+TN+ + I R+V F A LK + Sbjct: 61 RNLRTNKSIDIPARKVPKFVAGKNLKDVVE 90 >gi|160872885|ref|ZP_02063017.1| DNA-binding protein HU-beta [Rickettsiella grylli] gi|159121684|gb|EDP47022.1| DNA-binding protein HU-beta [Rickettsiella grylli] Length = 92 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ I + + + + + + + + I + GE + + F V+ + +R G Sbjct: 1 MNKSDLIDVIGEAAQIPKNVAGKTLEKILDSITKALCEGEDVSLVGFGALCVRHRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + + I VV FKA +LK + Sbjct: 61 RNPKTGESIPIKASNVVAFKAGKVLKDAVQKG 92 >gi|16273225|ref|NP_439464.1| integration host factor subunit alpha [Haemophilus influenzae Rd KW20] gi|68249973|ref|YP_249085.1| integration host factor subunit alpha [Haemophilus influenzae 86-028NP] gi|145630800|ref|ZP_01786578.1| predicted transporter [Haemophilus influenzae R3021] gi|145641673|ref|ZP_01797250.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae R3021] gi|260581340|ref|ZP_05849156.1| integration host factor, alpha subunit [Haemophilus influenzae RdAW] gi|260582472|ref|ZP_05850263.1| integration host factor, alpha subunit [Haemophilus influenzae NT127] gi|319897114|ref|YP_004135309.1| integration host factor (ihf), DNA-binding protein, alpha subunit [Haemophilus influenzae F3031] gi|1170524|sp|P43723|IHFA_HAEIN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81335603|sp|Q4QKM2|IHFA_HAEI8 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1574771|gb|AAC22959.1| integration host factor, alpha-subunit (himA) [Haemophilus influenzae Rd KW20] gi|68058172|gb|AAX88425.1| integration host factor alpha-subunit [Haemophilus influenzae 86-028NP] gi|144983682|gb|EDJ91142.1| predicted transporter [Haemophilus influenzae R3021] gi|145273720|gb|EDK13589.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae 22.4-21] gi|260092007|gb|EEW75954.1| integration host factor, alpha subunit [Haemophilus influenzae RdAW] gi|260094452|gb|EEW78349.1| integration host factor, alpha subunit [Haemophilus influenzae NT127] gi|309973174|gb|ADO96375.1| Integration host factor, alpha subunit [Haemophilus influenzae R2846] gi|317432618|emb|CBY80979.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus influenzae F3031] Length = 96 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94 >gi|225851130|ref|YP_002731364.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] gi|225645754|gb|ACO03940.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] Length = 90 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++ E G+++ + R V + ++ +GE + + F+VK++ +R G Sbjct: 1 MTKAELVAKVAAEAGVTKASAERCVNAFVKALTEALEKGERVALPGLGVFNVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+ I R+VV F A+ LK+++ Sbjct: 61 RNPRTGEEITIPARKVVTFHAAKALKEKVK 90 >gi|167566113|ref|ZP_02359029.1| histone family protein DNA-binding protein [Burkholderia oklahomensis EO147] Length = 92 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+++ V + + I D+ R EA+++ F F Q+ +R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLVGFGAFSRGQRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T +E+ I V F A K + + Sbjct: 61 RNPTTGEEIAIAAANTVKFTAGKAFKDAVNES 92 >gi|49473700|ref|YP_031742.1| integration host factor subunit beta [Bartonella quintana str. Toulouse] gi|49239203|emb|CAF25520.1| Integration host factor beta-subunit [Bartonella quintana str. Toulouse] Length = 92 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + G +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + + FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWIPFFKTGKDLRDRLNQ 92 >gi|310766847|gb|ADP11797.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia sp. Ejp617] Length = 90 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ + +S+ R + + + S GE + + +F TF V+++ R G Sbjct: 1 MNKSQLIEKIAADADVSKAAVGRILEAFIDTVTKSLQAGEEVALLNFGTFSVRERAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I R+V F+A L++ + Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAVK 90 >gi|332283861|ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7] gi|330427814|gb|AEC19148.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7] Length = 90 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ IS + LS+ D+ R + + + + + + F TF V ++ +R G Sbjct: 1 MNKTELIEHISTKADLSKADAGRALEAFIGAVKTTLKKKGTVTLVGFGTFAVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V F+ LK + Sbjct: 61 RNPRTGEAIKIKKAKVPKFRPGKALKDAVN 90 >gi|70733385|ref|YP_263160.1| integration host factor subunit beta [Pseudomonas fluorescens Pf-5] gi|68347684|gb|AAY95290.1| integration host factor, beta subunit, putative [Pseudomonas fluorescens Pf-5] Length = 91 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90 >gi|113461118|ref|YP_719186.1| integration host factor subunit beta [Haemophilus somnus 129PT] gi|170717700|ref|YP_001784773.1| integration host factor subunit beta [Haemophilus somnus 2336] gi|123031307|sp|Q0I390|IHFB_HAES1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045038|sp|B0UUH4|IHFB_HAES2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|112823161|gb|ABI25250.1| integration host factor, beta-subunit [Haemophilus somnus 129PT] gi|168825829|gb|ACA31200.1| integration host factor, beta subunit [Haemophilus somnus 2336] Length = 94 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++++ + KD V + ++ + GE I+I F +F + + SR+ Sbjct: 1 MTKSELIENLASTNPNVPLKDIENAVKDILEQLSQALENGERIEIRGFGSFSLHFRQSRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V + + V FKA LK+R+ Sbjct: 61 GRNPKTGEKVDLSAKYVPHFKAGKELKERVN 91 >gi|77461821|ref|YP_351328.1| nucleoid protein HU alpha subunit [Pseudomonas fluorescens Pf0-1] gi|77385824|gb|ABA77337.1| DNA-binding protein HU1 [Pseudomonas fluorescens Pf0-1] Length = 91 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90 >gi|94497991|ref|ZP_01304555.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] gi|94422574|gb|EAT07611.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] Length = 96 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++E GL+ + R V F EI D G +++ F F + + +R Sbjct: 1 MIRSELIQKLAEENPGLTVPEVERIVDLFFREIVDRLASGGRVELRGFGAFTTRARDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T ++V + +RV FK +++R+ Sbjct: 61 GRNPRTGEQVPVCAKRVPYFKPGKEMRERLNSGSEA 96 >gi|148266417|ref|YP_001233123.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|222056893|ref|YP_002539255.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|146399917|gb|ABQ28550.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|221566182|gb|ACM22154.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 94 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV++++K L++ + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVEAVAKSASLTKGAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI +V F+ LK + + Sbjct: 61 RNPQTGKEIKIAAAKVPKFRPGKALKDAVASKKK 94 >gi|49073542|gb|AAT49327.1| PA5348 [synthetic construct] Length = 91 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + L +EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT Q VKI V FK L+ + Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVNG 91 >gi|190574009|ref|YP_001971854.1| integration host factor subunit beta [Stenotrophomonas maltophilia K279a] gi|194365425|ref|YP_002028035.1| integration host factor subunit beta [Stenotrophomonas maltophilia R551-3] gi|254523418|ref|ZP_05135473.1| integration host factor, beta subunit [Stenotrophomonas sp. SKA14] gi|226709815|sp|B4SSV3|IHFB_STRM5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709816|sp|B2FNP6|IHFB_STRMK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|190011931|emb|CAQ45552.1| putative integration host factor beta-subunit [Stenotrophomonas maltophilia K279a] gi|194348229|gb|ACF51352.1| integration host factor, beta subunit [Stenotrophomonas maltophilia R551-3] gi|219721009|gb|EED39534.1| integration host factor, beta subunit [Stenotrophomonas sp. SKA14] Length = 101 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + S G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKADDVDLAVKSLLEMMGGSLSAGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90 >gi|167627762|ref|YP_001678262.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668326|ref|ZP_04755904.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876859|ref|ZP_05249569.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597763|gb|ABZ87761.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842880|gb|EET21294.1| DNA-binding protein HU-beta [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 90 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+KE ++++ ++ + + + G+++ + F TF VK++ +R G Sbjct: 1 MNKSELVSAIAKEADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FKA LK + Sbjct: 61 RNPKTGETIKIAASKVPSFKAGKGLKDAVK 90 >gi|289522945|ref|ZP_06439799.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503488|gb|EFD24652.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 92 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SD+V ++K G+S+KD+ V + D+ +GE ++I F TF V+ + +R G Sbjct: 1 MTKSDIVSEVAKATGMSKKDAAVAVDAFIKSVVDALSKGEEVQIMGFGTFEVRNRAARKG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN Q +E ++I + V F+A +LK + Sbjct: 61 RNPQNPEEIIEIPEKTVPAFRAGKMLKDAVAK 92 >gi|332666093|ref|YP_004448881.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332334907|gb|AEE52008.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 90 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ I++ +++ +T + + + I + + F TF V ++ +R G Sbjct: 1 MNKGDLINKIAEGAKITKAQATDALNAVLDSIAAELKGDGKVTLIGFGTFSVSKRDARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT Q + ID ++VV FK L + Sbjct: 61 RNPQTGQTITIDAKKVVKFKPGKELSDSVN 90 >gi|323495048|ref|ZP_08100137.1| integration host factor subunit beta [Vibrio brasiliensis LMG 20546] gi|323310705|gb|EGA63880.1| integration host factor subunit beta [Vibrio brasiliensis LMG 20546] Length = 93 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHFREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKFVPHFKPGKELRERVN 91 >gi|319794585|ref|YP_004156225.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] gi|315597048|gb|ADU38114.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] Length = 123 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 53/97 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++ L + ++ GL++++S V F + S + G +KIS F F ++ K Sbjct: 13 TPALTKAHLADLLFEQIGLNKRESKDMVEAFFELVASSLIEGTDVKISGFGNFQIRVKAP 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN +T + + I RRV F AS+ LK++I + Sbjct: 73 RPGRNPRTGEAIPIGERRVATFHASAKLKEQIHGSIE 109 >gi|182679839|ref|YP_001833985.1| integration host factor, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|226709769|sp|B2IKV6|IHFB_BEII9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|182635722|gb|ACB96496.1| integration host factor, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 97 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ L +D + V + +EI + RG+ +++ F F VK++ +R+ Sbjct: 1 MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V ++ + V FK +++R+ + Sbjct: 61 GRNPRTGAHVPVEEKSVPFFKTGKEMRERLNEGY 94 >gi|33594401|ref|NP_882045.1| DNA-binding protein HU-beta [Bordetella pertussis Tohama I] gi|33597120|ref|NP_884763.1| DNA-binding protein HU-beta [Bordetella parapertussis 12822] gi|33600964|ref|NP_888524.1| DNA-binding protein HU-beta [Bordetella bronchiseptica RB50] gi|163857015|ref|YP_001631313.1| DNA-binding protein HU-beta [Bordetella petrii DSM 12804] gi|293604392|ref|ZP_06686799.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|311105151|ref|YP_003978004.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8] gi|5777374|emb|CAB53382.1| DNA-binding protein Hu-beta [Bordetella pertussis] gi|5777382|emb|CAB53380.1| Hu-beta [Bordetella bronchiseptica] gi|33564476|emb|CAE43789.1| DNA-binding protein Hu-beta [Bordetella pertussis Tohama I] gi|33566571|emb|CAE37828.1| DNA-binding protein Hu-beta [Bordetella parapertussis] gi|33575399|emb|CAE32476.1| DNA-binding protein Hu-beta [Bordetella bronchiseptica RB50] gi|163260743|emb|CAP43045.1| DNA-binding protein Hu-beta [Bordetella petrii] gi|292817269|gb|EFF76343.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|310759840|gb|ADP15289.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8] gi|317402747|gb|EFV83294.1| DNA-binding protein Hu-beta [Achromobacter xylosoxidans C54] gi|332383812|gb|AEE68659.1| DNA-binding protein HU-beta [Bordetella pertussis CS] Length = 90 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ + +S+ + R + L + + +G + + F TF V + +R G Sbjct: 1 MNKTELIDHIASKADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V F+ LK + Sbjct: 61 RNPRTGETIKIKKAKVPKFRPGKALKDAVN 90 >gi|320354725|ref|YP_004196064.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320123227|gb|ADW18773.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 92 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL++SI+ +S+ + R + L + + + G+ + + F +F V + R G Sbjct: 1 MNKSDLIESIAHSAQISKIAAERGLNGLLSTLSAAITEGKRVTLVGFGSFSVVDRAPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + V I PRRVV F+ L +I+ D Sbjct: 61 RNPKTGETVPIPPRRVVKFRPGKELAGKILCD 92 >gi|254449408|ref|ZP_05062845.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|198263814|gb|EDY88084.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] Length = 117 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L +I+++ L ++D R V T+F I ++ G+ +++ F F VK++ +R+ Sbjct: 25 MIRSELTDTIAEQNPHLYQRDVERIVNTIFGRIIEAMSNGDRVELRGFGAFSVKKRDARL 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 85 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRLNG 116 >gi|220904362|ref|YP_002479674.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868661|gb|ACL48996.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ + L++ + R + + D+ V+ + ++ F TF V+ + +R G Sbjct: 1 MTKADLVEKIAAKANLTKAAAERTLNAFLASVEDALVKESKLTLTGFGTFAVEHRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I +++ F+ ILK + Sbjct: 61 RNPRTGDTLTIPACKIIKFRPGKILKDSLN 90 >gi|288958412|ref|YP_003448753.1| DNA-binding protein HU-beta [Azospirillum sp. B510] gi|288910720|dbj|BAI72209.1| DNA-binding protein HU-beta [Azospirillum sp. B510] Length = 91 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G+ + D+ + V +F I + RGE ++++ F F V ++ +R G Sbjct: 1 MNQAELIETVATNAGIKKADAAKVVQAVFEGISGALGRGEDVRLAGFGIFEVAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V I + FK + L+ + Sbjct: 61 RNPRTGEVVAIAASKAPKFKPAKQLRDLVNG 91 >gi|159026304|emb|CAO88881.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 94 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I+ + +++K + +T I D+ G+ + + F +F +++ +R G Sbjct: 1 MNKGELIDQIALKASVTKKQADAVLTAAIETIIDAVSEGDKVTLVGFGSFEARERQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T +++I RV F A + K R+ D Sbjct: 61 RNPKTGDKMEIPATRVPAFSAGKLFKDRVAPDKE 94 >gi|145636219|ref|ZP_01791889.1| predicted transporter [Haemophilus influenzae PittHH] gi|145270741|gb|EDK10674.1| predicted transporter [Haemophilus influenzae PittHH] Length = 96 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS+ D+ V EI S G +K+S F F ++ K SR Sbjct: 3 TITKIDIIEYLSDKYQLSKYDTKNVVENFLEEIRSSLESGHDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94 >gi|91214902|ref|ZP_01251875.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis ATCC 700755] gi|91187329|gb|EAS73699.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis ATCC 700755] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ G+++ ++ + + + + + +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTNLIDAMAEDAGVTKAEAKKALESFLENVEGALKKGDRVSLVGFGSWSVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L+K + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQKAVN 90 >gi|121594958|ref|YP_986854.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|222110394|ref|YP_002552658.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] gi|120607038|gb|ABM42778.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|221729838|gb|ACM32658.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGATIKIKAAKVPKFRPGKALKDALN 90 >gi|15600541|ref|NP_254035.1| DNA-binding protein [Pseudomonas aeruginosa PAO1] gi|107104450|ref|ZP_01368368.1| hypothetical protein PaerPA_01005527 [Pseudomonas aeruginosa PACS2] gi|116053495|ref|YP_793822.1| HU family DNA-binding protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218894451|ref|YP_002443321.1| putative DNA-binding protein [Pseudomonas aeruginosa LESB58] gi|254237960|ref|ZP_04931283.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719] gi|254243767|ref|ZP_04937089.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192] gi|296392208|ref|ZP_06881683.1| putative DNA-binding protein [Pseudomonas aeruginosa PAb1] gi|313106776|ref|ZP_07792992.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016] gi|14194645|sp|Q9HTL0|DBHA_PSEAE RecName: Full=DNA-binding protein HU-alpha gi|9951668|gb|AAG08733.1|AE004947_3 probable DNA-binding protein [Pseudomonas aeruginosa PAO1] gi|115588716|gb|ABJ14731.1| putative DNA-binding protein HU family [Pseudomonas aeruginosa UCBPP-PA14] gi|126169891|gb|EAZ55402.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719] gi|126197145|gb|EAZ61208.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192] gi|218774680|emb|CAW30497.1| probable DNA-binding protein [Pseudomonas aeruginosa LESB58] gi|310879494|gb|EFQ38088.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + L +EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q VKI V FK L+ + Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >gi|296534243|ref|ZP_06896727.1| integration host factor [Roseomonas cervicalis ATCC 49957] gi|296265430|gb|EFH11571.1| integration host factor [Roseomonas cervicalis ATCC 49957] Length = 102 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 42/97 (43%), Positives = 59/97 (60%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 TITR+ L ++I + GLSR +S + + I + G +KIS+F TF V+QKG R Sbjct: 2 NTITRAQLAEAIYAQVGLSRNESAALLEDVLERISAALEAGRPVKISAFGTFSVRQKGMR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 VGRN +T EV I PRRV+ F+ S +LK R+ + G Sbjct: 62 VGRNPKTGIEVPIMPRRVLSFRPSQVLKARLNGEPVG 98 >gi|158339247|ref|YP_001520424.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158309488|gb|ABW31105.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 91 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV SI ++ G ++K + ++ L I DS GE + + F +F + + +R G Sbjct: 1 MNKADLVDSIVEKSGTTKKQADTILSALTETIIDSVSSGEKVTLVGFGSFEARDRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +++KI + VF A K+++ D Sbjct: 61 RNPQTGKQLKIPATKAPVFSAGKDFKEKVRD 91 >gi|56751859|ref|YP_172560.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301] gi|81301057|ref|YP_401265.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942] gi|56686818|dbj|BAD80040.1| DNA binding protein HU [Synechococcus elongatus PCC 6301] gi|81169938|gb|ABB58278.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942] Length = 91 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++ GL++ + L + I D+ V GE + I F F +++ R G Sbjct: 1 MNKGELIDQVAVRTGLTKVQVAAAIDALVDVIVDTVVEGEKVSILGFGAFEARERSERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T ++ I ++V F A + K R+ Sbjct: 61 LNPKTGDKILIPAKKVPAFTAGKLFKDRVQG 91 >gi|226944153|ref|YP_002799226.1| integration host factor subunit alpha [Azotobacter vinelandii DJ] gi|226719080|gb|ACO78251.1| integration host factor, alpha subunit [Azotobacter vinelandii DJ] Length = 92 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85 >gi|5420132|emb|CAB46606.1| HimA protein [Yersinia pseudotuberculosis] Length = 98 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 50/95 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS + V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEHLFEKLGLSNEMLKILVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T +++ I RRVV F+ LK R+ Sbjct: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVESATP 96 >gi|330505647|ref|YP_004382516.1| nucleoid protein HU subunit alpha [Pseudomonas mendocina NK-01] gi|328919933|gb|AEB60764.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina NK-01] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L++ + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKTDLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q VKI V FK LK + Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKSLKDAVN 90 >gi|39996845|ref|NP_952796.1| integration host factor subunit beta [Geobacter sulfurreducens PCA] gi|39983733|gb|AAR35123.1| integration host factor, beta subunit [Geobacter sulfurreducens PCA] gi|298505860|gb|ADI84583.1| integration host factor, beta subunit [Geobacter sulfurreducens KN400] Length = 92 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ E GL+ K + V +F+ + + +R E I+I F +F VK S G Sbjct: 1 MNKSELIEALAAEKGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ P+++ FK LK+R+ Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERV 89 >gi|114798899|ref|YP_758925.1| integration host factor subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739073|gb|ABI77198.1| integration host factor, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 99 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S L++ ++ + L +D + V + EI D+ RG+ +++ F F V+++ +R Sbjct: 1 MLKSQLIEKLAAENAHLRHEDVEKVVNVILGEIGDALTRGDRVELRGFGAFSVRKRDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + VK+ + V FKA L+ R+ Sbjct: 61 GRNPRTGEPVKVPAKAVPFFKAGKELRARVNGG 93 >gi|225851686|ref|YP_002731919.1| integration host factor subunit beta [Brucella melitensis ATCC 23457] gi|256045945|ref|ZP_05448817.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256264801|ref|ZP_05467333.1| integration host factor subunit beta [Brucella melitensis bv. 2 str. 63/9] gi|260563226|ref|ZP_05833712.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. 16M] gi|265992355|ref|ZP_06104912.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|21362604|sp|Q8YET3|IHFB_BRUME RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803528|sp|C0RGK7|IHFB_BRUMB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|225640051|gb|ACN99964.1| integration host factor, beta subunit [Brucella melitensis ATCC 23457] gi|260153242|gb|EEW88334.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. 16M] gi|263003421|gb|EEZ15714.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263095212|gb|EEZ18881.1| integration host factor subunit beta [Brucella melitensis bv. 2 str. 63/9] Length = 94 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V ++ + V FK L+ R+ + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94 >gi|229496747|ref|ZP_04390458.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC 35406] gi|229316293|gb|EEN82215.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC 35406] Length = 88 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 51/85 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ GL++ D+ R V + ++ +G+ + + F TF V Q+ +R G Sbjct: 1 MNKTEFIAAVAEKAGLTKADAQRAVNAFTEVVKETMEKGDRLPLVGFGTFSVSQRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 +N +T + +KI R+VV FK + L Sbjct: 61 KNPRTGETIKIAARKVVHFKPGANL 85 >gi|37525568|ref|NP_928912.1| integration host factor subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|81707739|sp|Q7N6D2|IHFB_PHOLL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|36784996|emb|CAE13916.1| integration host factor beta-subunit (IHF-beta) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 94 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ +S K V + + + + GE I++ F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHISAKTVEDAVKEILDHMAITLADGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|113968892|ref|YP_732685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|113883576|gb|ABI37628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA L+ + Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90 >gi|257094466|ref|YP_003168107.1| integration host factor subunit beta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046990|gb|ACV36178.1| integration host factor, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 97 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL+ +++ F L KD+ V + + ++ G+ I+I F +F + + RV Sbjct: 1 MTKSDLIAQLAERFPQLVAKDADLSVKMILEAMAEALSNGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + + V FKA L++R+ + Sbjct: 61 GRNPKSGEKVNVPEKWVPHFKAGKELRERVDGSLE 95 >gi|291614260|ref|YP_003524417.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291584372|gb|ADE12030.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 91 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDL+++I+K +S+ + R + I S +GE + + F TF+V ++ +R GR Sbjct: 3 NKSDLIEAIAKSADISKAAAGRALDATIESIKKSLKKGELVSLVGFGTFYVGKRAARNGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +KI +V F+A LK + Sbjct: 63 NPRTGATIKIKAAKVPKFRAGKGLKDAVN 91 >gi|91784810|ref|YP_560016.1| integration host factor subunit beta [Burkholderia xenovorans LB400] gi|123062639|sp|Q13VC5|IHFB_BURXL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91688764|gb|ABE31964.1| Integration host factor, beta subunit [Burkholderia xenovorans LB400] Length = 107 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V + + V FK L++R+ D G +D Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEDP 103 >gi|145588688|ref|YP_001155285.1| integration host factor, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047094|gb|ABP33721.1| integration host factor, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 114 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 3 KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ITRS+LV+S++++F L +D V TL + + + G+ I++ +F + + + Sbjct: 7 QAITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTQALAEGKRIELRGVGSFVLHHRPA 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R GRN ++ ++V I +RV FK L++R+ Sbjct: 67 RTGRNPKSGEKVLIPEKRVPHFKPGKELRERV 98 >gi|256828814|ref|YP_003157542.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256577990|gb|ACU89126.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 91 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++++ +S +++ V + F+ + D+ +RG+ I+I F +F +KQ +G Sbjct: 1 MNKSELIQSLAEKIKISNDEASTIVDSFFDSMRDALLRGDRIEIRGFGSFKIKQYEGYIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V++ P+++ FKA L + Sbjct: 61 RNPKTGESVQVKPKKMPFFKAGKGLLDYLNG 91 >gi|217968881|ref|YP_002354115.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] gi|217506208|gb|ACK53219.1| histone family protein DNA-binding protein [Thauera sp. MZ1T] Length = 91 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V++++ + R + R ++ + + I + +GE + + F +F V Q+ +R G Sbjct: 1 MNKGEFVEALADRLDVHRAQADRALSAVLDIIAEQLAKGEKVAFTGFGSFEVSQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I V F A + LK + Sbjct: 61 RNPQTGATIEIAASSVPKFTAGATLKASVNK 91 >gi|238920344|ref|YP_002933859.1| integration host factor subunit beta [Edwardsiella ictaluri 93-146] gi|294636909|ref|ZP_06715236.1| integration host factor, beta subunit [Edwardsiella tarda ATCC 23685] gi|259492035|sp|C5BBR9|IHFB_EDWI9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|238869913|gb|ACR69624.1| integration host factor, beta subunit, putative [Edwardsiella ictaluri 93-146] gi|291089862|gb|EFE22423.1| integration host factor, beta subunit [Edwardsiella tarda ATCC 23685] Length = 94 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ L K V + + + GE I+I F +F + + R+ Sbjct: 1 MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V+++ + V FK L+ R Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91 >gi|239814795|ref|YP_002943705.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|319792644|ref|YP_004154284.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] gi|239801372|gb|ACS18439.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|315595107|gb|ADU36173.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] Length = 90 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + + I + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKNADISKAAATRALESTIGAIRTTLKKGGSVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI ++ F+ LK + Sbjct: 61 RNPRTGDAIKIKAAKIPKFRPGKALKDALN 90 >gi|261253451|ref|ZP_05946024.1| integration host factor beta subunit [Vibrio orientalis CIP 102891] gi|260936842|gb|EEX92831.1| integration host factor beta subunit [Vibrio orientalis CIP 102891] Length = 93 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLEGGDRIEIRGFGSFSLHFREPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELEGKFVPHFKPGKELRERVN 91 >gi|91788925|ref|YP_549877.1| nucleoid protein Hbs [Polaromonas sp. JS666] gi|91698150|gb|ABE44979.1| bacterial nucleoid protein Hbs [Polaromonas sp. JS666] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + + + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGSVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 90 >gi|253990302|ref|YP_003041658.1| integration host factor subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781752|emb|CAQ84915.1| integration host factor beta-subunit (ihf-beta) [Photorhabdus asymbiotica] Length = 94 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ +S K V + + + + GE I++ F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHISAKTVEDAVKEMLDHMAVTLADGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|322381499|ref|ZP_08055479.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|322382684|ref|ZP_08056542.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153345|gb|EFX45775.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154541|gb|EFX46837.1| non-specific DNA-binding protein Hbsu/signal recognition particle-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 119 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ ++K G S+K++ + VT + + I ++ +G+ +++ F F V+ + +R+G Sbjct: 28 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +EV++ +V VF A LKK + Sbjct: 88 RNRKTGEEVELPAGKVPVFTAGITLKKALN 117 >gi|307825283|ref|ZP_07655503.1| integration host factor, beta subunit [Methylobacter tundripaludum SV96] gi|307733739|gb|EFO04596.1| integration host factor, beta subunit [Methylobacter tundripaludum SV96] Length = 101 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++++K + L++KD V + ++ + GE I+I F +F + + R+ Sbjct: 1 MTKSELIEALAKHQPHLAQKDVEIAVKCIIEQMNQALSSGERIEIRGFGSFSLHLRPPRM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L+ R+ Sbjct: 61 GRNPKTGESVALSKKHVPHFKPGKELRDRV 90 >gi|89886013|ref|YP_516210.1| DNA-binding protein HU-beta [Sodalis phage phiSG1] gi|89191748|dbj|BAE80495.1| DNA-binding protein HU-beta [Sodalis phage phiSG1] gi|125470043|gb|ABN42235.1| gp28 [Sodalis phage phiSG1] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++++S++ +S+ + + + + + S G+ +KI+ F TF VK + R G Sbjct: 1 MNKSHLIRAVSEKTDISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I RV F+A LK+ + Sbjct: 61 RNPKTGEAMTIPAARVPAFRARKGLKEAV 89 >gi|212702487|ref|ZP_03310615.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC 29098] gi|212674148|gb|EEB34631.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC 29098] Length = 91 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++++E L D++ V T + + DS + G+ I+I F +F +K+ G Sbjct: 1 MNKSELIKALAEESNLPFDDASLVVNTFIDAMKDSLIAGDRIEIRGFGSFKIKEYSGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V + P+R+ F+A LK+ I Sbjct: 61 RNPKTGESVSVVPKRLPFFRAGKELKEYINQ 91 >gi|332529106|ref|ZP_08405070.1| histone family protein DNA-binding protein [Hylemonella gracilis ATCC 19624] gi|332041329|gb|EGI77691.1| histone family protein DNA-binding protein [Hylemonella gracilis ATCC 19624] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + ++ + + +G ++ + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKNADISKAAATRALESVIGAVKTTLKKGGSVSLVGFGTFAVTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI ++ F+ LK + Sbjct: 61 RNPRTGDTIKIKAAKLPKFRPGKALKDALN 90 >gi|160903339|ref|YP_001568920.1| histone family protein DNA-binding protein [Petrotoga mobilis SJ95] gi|160360983|gb|ABX32597.1| histone family protein DNA-binding protein [Petrotoga mobilis SJ95] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV + +K+ +++KD+ FV + + ++ +GE +K+ F TF V+++ +R G Sbjct: 1 MNKKDLVDAFAKKANVTKKDAESFVDAFVDVVSEALSKGEEVKLVGFGTFKVQKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + +KI + V F LK + Sbjct: 61 VNPQTGKAIKIPEKMVPKFVPGKELKDMVK 90 >gi|14194853|sp|Q9F297|IHFA_NEIGO RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|9965582|gb|AAG10094.1| IfhB [Neisseria gonorrhoeae] Length = 96 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + +++ + V F EI + GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNVTKNSAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EV I RRVV F AS LK + Sbjct: 62 PGRNPKTGEEVPITARRVVTFHASQKLKGMVE 93 >gi|158339956|ref|YP_001521126.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158310197|gb|ABW31812.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 91 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV SI+++ G ++K + ++ + I DS GE + + F +F + + +R G Sbjct: 1 MNKGELVDSIAEKSGATKKQADAILSAVTETIIDSVSSGEKVTLVGFGSFEARDRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +++ I + VF A + K+++ D Sbjct: 61 RNPQTGKKLTIPATKAPVFSAGKVFKEQVKD 91 >gi|126640672|ref|YP_001083656.1| integration host factor subunit alpha [Acinetobacter baumannii ATCC 17978] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 52/87 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + +S+ L+R+++ + V F+EI + + GE +K+S F F ++ K R GRN +T Sbjct: 1 MADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDD 96 +E+ I RRVV F+A ++R+ ++ Sbjct: 61 GEEIPISARRVVTFRAGQKFRQRVGNE 87 >gi|119776290|ref|YP_929030.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B] gi|119768790|gb|ABM01361.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L+ I++ L++ ++ R + + + + G+ I I F +F + R G Sbjct: 1 MNRTELIAKIAESADLTKAEAGRALKSFEEAVTAAMKDGDKISIVGFGSFETSTRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI + FKA L+ + Sbjct: 61 RNPQTGKEIKIPAATIPKFKAGKALRDSVN 90 >gi|218134050|ref|ZP_03462854.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC 43243] gi|217991425|gb|EEC57431.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC 43243] Length = 96 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 53/96 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ LS+KD+ + L I + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELVAAMAEKAELSKKDAEAALKALTATIAEELTKGEKVQLVGFGTFEVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +N QT + +KI + FKA LK + + + Sbjct: 61 KNPQTGKAIKIPASKAPKFKAGKALKDTVNSTKKKK 96 >gi|307545457|ref|YP_003897936.1| integration host factor subunit beta [Halomonas elongata DSM 2581] gi|307217481|emb|CBV42751.1| K05788 integration host factor subunit beta [Halomonas elongata DSM 2581] Length = 98 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ ++ LS KD V + ++I + G ++I F +F + + R Sbjct: 1 MTKSELIEQIAMRQPELSVKDVETAVRMILDDITGTLANGGRVEIRGFGSFSLHYREPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FK L++++ Sbjct: 61 GRNPKTGDPVALSGKFVPHFKPGKELREQV 90 >gi|49474845|ref|YP_032886.1| integration host factor subunit beta [Bartonella henselae str. Houston-1] gi|49237650|emb|CAF26830.1| Integration host factor beta-subunit [Bartonella henselae str. Houston-1] Length = 92 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + V G +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALVNGNRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + + FK L+ R+ Sbjct: 61 GRNPRTGEAVMVEEKWIPFFKTGKDLRDRLNQ 92 >gi|330806808|ref|YP_004351270.1| DNA-binding protein, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374916|gb|AEA66266.1| Putative DNA-binding protein, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 91 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKFLKDSVN 90 >gi|319898205|ref|YP_004158298.1| integration host factor beta chain [Bartonella clarridgeiae 73] gi|319402169|emb|CBI75695.1| integration host factor beta chain [Bartonella clarridgeiae 73] Length = 92 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D+ V +F EI + G+ +++ F F +K + +R Sbjct: 1 MVKSELVQIIARHNPHLMQRDAENVVNAIFEEISAALANGQRVELRGFGAFSIKTRLARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRLN 91 >gi|167623972|ref|YP_001674266.1| integration host factor subunit beta [Shewanella halifaxensis HAW-EB4] gi|189045044|sp|B0TT46|IHFB_SHEHH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|167353994|gb|ABZ76607.1| integration host factor, beta subunit [Shewanella halifaxensis HAW-EB4] Length = 95 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ D+ G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK L++R+ Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90 >gi|145298755|ref|YP_001141596.1| integration host factor subunit beta [Aeromonas salmonicida subsp. salmonicida A449] gi|330830009|ref|YP_004392961.1| integration host factor subunit beta [Aeromonas veronii B565] gi|166918538|sp|A4SLS6|IHFB_AERS4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|142851527|gb|ABO89848.1| integration host factor beta-subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|328805145|gb|AEB50344.1| Integration host factor subunit beta [Aeromonas veronii B565] Length = 94 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ ++ + KD + + ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91 >gi|83310022|ref|YP_420286.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82944863|dbj|BAE49727.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 92 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F +F V + +R G Sbjct: 1 MNKSELIAAVADGANMTKADAASAIDAVFEAITAAMKSGDDVRLVGFGSFSVSARPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 91 >gi|296533549|ref|ZP_06896119.1| integration host factor beta subunit [Roseomonas cervicalis ATCC 49957] gi|296266119|gb|EFH12174.1| integration host factor beta subunit [Roseomonas cervicalis ATCC 49957] Length = 108 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L + D V T+FNEI + RG+ +++ F F KQ+ +R Sbjct: 1 MTKSELIAQLAAANPHLRQPDVELIVGTIFNEITAALSRGDRVELRGFGAFSAKQRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ + V FK L++R+ Sbjct: 61 GRNPRTGEAVEVAGKAVPYFKPGKELRERVNGG 93 >gi|146309415|ref|YP_001189880.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp] gi|145577616|gb|ABP87148.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L++ + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q VKI V FK LK + Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKSLKDAVN 90 >gi|120597447|ref|YP_962021.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|126172756|ref|YP_001048905.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|146294412|ref|YP_001184836.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|153002323|ref|YP_001368004.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160877047|ref|YP_001556363.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217974911|ref|YP_002359662.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304410864|ref|ZP_07392481.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|307304965|ref|ZP_07584715.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|120557540|gb|ABM23467.1| histone family protein DNA-binding protein [Shewanella sp. W3-18-1] gi|125995961|gb|ABN60036.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|145566102|gb|ABP77037.1| histone family protein DNA-binding protein [Shewanella putrefaciens CN-32] gi|151366941|gb|ABS09941.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160862569|gb|ABX51103.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|217500046|gb|ACK48239.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|304350761|gb|EFM15162.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|306912367|gb|EFN42791.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|315269251|gb|ADT96104.1| histone family protein DNA-binding protein [Shewanella baltica OS678] gi|319427766|gb|ADV55840.1| histone family protein DNA-binding protein [Shewanella putrefaciens 200] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ L++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADLTKVEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA L+ + Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90 >gi|313499440|gb|ADR60806.1| IhfA [Pseudomonas putida BIRD-1] Length = 92 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85 >gi|299066877|emb|CBJ38072.1| Integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum CMR15] Length = 140 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + +RV FKA L++R+ + Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97 >gi|302878840|ref|YP_003847404.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302581629|gb|ADL55640.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 90 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +I+ +S+ + R + N I + GE + + F F V ++ RVG Sbjct: 1 MNKSDLVDAIATSADISKAAAGRALDGALNAIKTALKNGEEVSLVGFGAFTVGERAGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + I +V F+A LK + Sbjct: 61 RNPQTGAAITIKAAKVPKFRAGKGLKDAVN 90 >gi|71276210|ref|ZP_00652489.1| Integration host factor, beta subunit [Xylella fastidiosa Dixon] gi|71900469|ref|ZP_00682600.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1] gi|14194873|sp|Q9PAQ8|IHFB_XYLFA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|71162971|gb|EAO12694.1| Integration host factor, beta subunit [Xylella fastidiosa Dixon] gi|71729775|gb|EAO31875.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1] Length = 104 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++K L D V +L + + G+ I+I F +F + + R Sbjct: 1 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + V + + V FK L++R+ + +C Sbjct: 61 GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLAECGD 101 >gi|269139519|ref|YP_003296220.1| integration host factor, beta subunit [Edwardsiella tarda EIB202] gi|267985180|gb|ACY85009.1| integration host factor, beta subunit [Edwardsiella tarda EIB202] gi|304559408|gb|ADM42072.1| Integration host factor beta subunit [Edwardsiella tarda FL6-60] Length = 94 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ L K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V+++ + V FK L+ R Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91 >gi|253996886|ref|YP_003048950.1| integration host factor subunit beta [Methylotenera mobilis JLW8] gi|253983565|gb|ACT48423.1| integration host factor, beta subunit [Methylotenera mobilis JLW8] Length = 93 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + D+ GE I+I F +F + + R+ Sbjct: 1 MTKSELITLLAERFPQLVMKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +V++ + V FKA L++R+ Sbjct: 61 GRNPKTGSKVEVPEKHVPHFKAGKELRERV 90 >gi|194288914|ref|YP_002004821.1| integration host factor subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193222749|emb|CAQ68752.1| Integration host factor, beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 141 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + ++ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + +RV FKA L++R+ Sbjct: 63 GRNPKSGERVLVPEKRVPHFKAGKELRERV 92 >gi|167625721|ref|YP_001676015.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] gi|167355743|gb|ABZ78356.1| histone family protein DNA-binding protein [Shewanella halifaxensis HAW-EB4] Length = 90 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++ ++ R + + + ++ GE I I F +F ++ +R G Sbjct: 1 MNKTELVAKMAESAELTKAEAARALKSFEVTVAEAMKNGEKISIVGFGSFETTERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA LK + Sbjct: 61 RNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90 >gi|240849695|ref|YP_002971083.1| integration host factor beta subunit [Bartonella grahamii as4aup] gi|240266818|gb|ACS50406.1| integration host factor beta subunit [Bartonella grahamii as4aup] Length = 92 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V +F EI + G +++ F F VK + +R Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + + FK L+ R+ Sbjct: 61 GRNPRTGEAVSVEEKWIPFFKTGKDLRDRLNQ 92 >gi|241662464|ref|YP_002980824.1| integration host factor subunit beta [Ralstonia pickettii 12D] gi|309781046|ref|ZP_07675784.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA] gi|240864491|gb|ACS62152.1| integration host factor, beta subunit [Ralstonia pickettii 12D] gi|308920112|gb|EFP65771.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 142 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 2/110 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 GRN ++ ++V + +RV FKA L++R+ + R+ P+ S Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE-RQGEPSSEGEPAVS 111 >gi|24372142|ref|NP_716184.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] gi|24346038|gb|AAN53629.1|AE015502_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1] Length = 90 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ +TR + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAQATRALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA L+ + Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90 >gi|94265743|ref|ZP_01289479.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94271834|ref|ZP_01292021.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93450327|gb|EAT01564.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93453718|gb|EAT04096.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 94 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 62/93 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+++LV+ I ++ LSR+++ V + D+ RGE + +S F F+V+QK +R Sbjct: 2 TLTKAELVRRIHQQHDLSREEAVAVVDNFLDIAKDTLGRGEDLLLSGFGKFNVRQKKARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT +E+ + PR+V+ FKAS IL++RI D Sbjct: 62 GRNPQTGEELTLSPRKVITFKASGILRQRINGD 94 >gi|190014801|ref|YP_001967565.1| VirN [Agrobacterium tumefaciens] gi|71849604|gb|AAZ50552.1| VirN [Agrobacterium tumefaciens] Length = 100 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV ++ L R+D+ V ++ +EI + RGE ++I F TF V+ + +R Sbjct: 1 MIKSELVDLLAARNPYLHRRDAENAVDSVLDEITGALERGERVEIRGFGTFVVRHRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM--DDMRGRK 101 GRN V ++ + V F+A +K R+ ++ RG++ Sbjct: 61 GRNPLNGNAVLVEEKWVPFFRAGKEIKDRLNMAEEPRGKE 100 >gi|241763693|ref|ZP_04761742.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241367082|gb|EER61456.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 90 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + R + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIANNADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90 >gi|259909249|ref|YP_002649605.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia pyrifoliae Ep1/96] gi|224964871|emb|CAX56393.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia pyrifoliae Ep1/96] gi|283479300|emb|CAY75216.1| transcriptional regulator HU subunit beta [Erwinia pyrifoliae DSM 12163] Length = 90 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ I+ + +S+ R + + + S GE + + +F TF V+++ R G Sbjct: 1 MNKSQLIEKIAADADVSKASVGRILEAFIDTVTKSLQVGEEVALLNFGTFSVRERAERPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I R+V F+A L++ + Sbjct: 61 RNPQTGKEITIAARKVAGFRAGKELREAVK 90 >gi|319776256|ref|YP_004138744.1| integration host factor (IHF), DNA-binding protein subunit alpha [Haemophilus influenzae F3047] gi|329123395|ref|ZP_08251959.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC 11116] gi|317450847|emb|CBY87071.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus influenzae F3047] gi|327470977|gb|EGF16432.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC 11116] Length = 96 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+V+ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKIDIVEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVAFKPGQKLRARVEK 94 >gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas arsenicoxydans] gi|133738858|emb|CAL61905.1| DNA-binding protein HU-beta (NS1) (HU-1) [Herminiimonas arsenicoxydans] Length = 90 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ +S+ +TR + + + + + + + F TF V ++ +R G Sbjct: 1 MNKTELIDHIAGSADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI +V FK LK + Sbjct: 61 RNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90 >gi|317153210|ref|YP_004121258.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316943461|gb|ADU62512.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 90 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ L++ ++ R + + + V + ++ F TF V+Q+ +RVG Sbjct: 1 MTKAELVVKIAEKANLTKANAERALNAFLESVEGNLVSEGKLTLTGFGTFVVEQRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++KI +VV F+ +LK I Sbjct: 61 RNPRTGADIKIPATKVVKFRPGKLLKDAIK 90 >gi|215778416|ref|YP_002261556.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] gi|208011461|emb|CAQ81925.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I++ LS++ +T + + I + G+ + + F TF V + +R G Sbjct: 1 MNKKELVWHIAESADLSQQRATATLNATVDIITTALKEGDDVALVGFGTFKVNPRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++I +VFKA LK+ + Sbjct: 61 RNPKTGDMIQIAASNALVFKAGKALKETLN 90 >gi|17988077|ref|NP_540711.1| integration host factor subunit beta [Brucella melitensis bv. 1 str. 16M] gi|17983827|gb|AAL52975.1| integration host factor beta-subunit [Brucella melitensis bv. 1 str. 16M] Length = 101 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 SK + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + Sbjct: 5 SKAVIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRP 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +R GRN +T + V ++ + V FK L+ R+ + Sbjct: 65 ARSGRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 101 >gi|118577357|ref|YP_899597.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118504862|gb|ABL01344.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 101 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ + +S G+ ++++ V T+ + + D+ GE IKIS F F+VKQK R G Sbjct: 1 MTKADITEKVSNTIGVPKREAADLVETVLSIMKDTLASGERIKISGFGCFNVKQKTDRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I RRV+ FK SSIL+ I Sbjct: 61 RNPQTGERLTISARRVLTFKPSSILRDAIN 90 >gi|332967814|gb|EGK06913.1| integration host factor subunit alpha [Kingella kingae ATCC 23330] Length = 102 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + + L + D+ V F EI + +GE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVDKVSNLGKNDAKEIVELFFEEIRTTLAQGEEIKISGFGNFQLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T +EV I RRVV F AS LK + ++ Sbjct: 62 PGRNPKTGEEVAITARRVVTFHASQKLKGMVEHYYEKQQAR 102 >gi|319407888|emb|CBI81540.1| integration host factor beta chain [Bartonella schoenbuchensis R1] Length = 92 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++ L ++D V +F EI + + G+ I++ F F VK + +R Sbjct: 1 MIKSELIQIIARYNPHLLQRDVENIVNAVFEEISTALINGDRIELRGFGAFAVKSRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVVVEKKWVPFFKTGKDLRDRLNK 92 >gi|160945509|ref|ZP_02092735.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii M21/2] gi|158443240|gb|EDP20245.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii M21/2] Length = 108 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T++DL+ ++ +S+K + + V+ +F + + GE I IS F TF V+++ Sbjct: 17 ANNMTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAE 76 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 R G N +T + + I R +VFK LK Sbjct: 77 RQGINPRTREPITIAASRSIVFKPGKSLKD 106 >gi|166366854|ref|YP_001659127.1| DNA binding protein HU [Microcystis aeruginosa NIES-843] gi|166089227|dbj|BAG03935.1| DNA binding protein HU [Microcystis aeruginosa NIES-843] Length = 94 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I+ + +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELIDQIALKASVTKKQADAVLTAAIETIIEAVSEGDKVTLVGFGSFEARERQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T +++I RV F A + K R+ D Sbjct: 61 RNPKTGDKMEIPATRVPAFSAGKLFKDRVAPDKE 94 >gi|330961377|gb|EGH61637.1| HU family DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++V +I+++ L++ ST + + I D+ R +++ + F TF + +G+R G Sbjct: 1 MRKPEVVAAIAEKADLTKDQSTLVLNAILEHITDALSRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90 >gi|317486374|ref|ZP_07945202.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316922363|gb|EFV43621.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 56/90 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK+++ + +S ++T V T + + DS + G ++I F +F VK+ GS G Sbjct: 1 MNKSELVKALADQANISLDEATLVVNTFVDSMKDSLLEGGRVEIRGFGSFKVKEYGSYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++V ++P+R+ F+A LK+ + Sbjct: 61 RNPRTGEKVAVEPKRLPFFRAGKELKEYLN 90 >gi|108805105|ref|YP_645042.1| nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941] gi|108766348|gb|ABG05230.1| bacterial nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941] Length = 90 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 54/89 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+++ S+ ++ RF + DS +GE ++I+ F F+V+++ +R G Sbjct: 1 MNKSELIQEIAEKTNGSKSEAQRFFDAFAEVVRDSLKKGEPVQITGFGKFYVQEREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT Q++ I P +V F A + LK+ I Sbjct: 61 INPQTKQKITIPPSKVPKFTAGNSLKEAI 89 >gi|332879942|ref|ZP_08447627.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682153|gb|EGJ55065.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GLS+ D+ + V F+ + + G+ + I F + V +K +R Sbjct: 1 MNKTELIDAIAAEAGLSKVDAKKAVEAFFSSVEKALTNGDKVSIVGFGAWSVAEKEARDA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +K+ ++VV FKA + L + Sbjct: 61 RNPRTGEVIKVPAKKVVKFKAGTELADAVNK 91 >gi|117919001|ref|YP_868193.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] gi|117611333|gb|ABK46787.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] Length = 90 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETTTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA L+ + Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90 >gi|120603250|ref|YP_967650.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46448590|gb|AAS95244.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120563479|gb|ABM29223.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL ++ + + + D+ GE++ + F +F V + +R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +VV F +LK + Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >gi|332993174|gb|AEF03229.1| integration host factor subunit beta [Alteromonas sp. SN2] Length = 95 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + KD + L ++ + +G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLADQARQIPAKDLELAIKELLEQMAQTLQKGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++D + V FK L++R+ + Sbjct: 61 GRNPKTGETVELDGKYVPHFKPGKELRERVDASIA 95 >gi|330810587|ref|YP_004355049.1| transcription factor, unclassified [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378695|gb|AEA70045.1| putative Transcription factor, unclassified [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 92 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85 >gi|167586533|ref|ZP_02378921.1| integration host factor, beta subunit [Burkholderia ubonensis Bu] Length = 107 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V++ + V FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADEP 103 >gi|94676703|ref|YP_588518.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219853|gb|ABF14012.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 94 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ IS + LS+ + + + I +S G+ +++ F TF + + R+G Sbjct: 1 MNKTQLIDVISDKADLSKAQAKSALESTLAAITESLRGGDTVQLVGFGTFKINHRSERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + L+K + Sbjct: 61 RNPQTGKEIKIAAVNVPTFISGKTLRKAVK 90 >gi|17545629|ref|NP_519031.1| integration host factor subunit beta [Ralstonia solanacearum GMI1000] gi|21362603|sp|Q8Y0Y3|IHFB_RALSO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|17427922|emb|CAD14612.1| putative integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum GMI1000] Length = 138 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + +RV FKA L++R+ + Sbjct: 61 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 95 >gi|74316975|ref|YP_314715.1| integration host factor subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74056470|gb|AAZ96910.1| integration host factor, beta subunit [Thiobacillus denitrificans ATCC 25259] Length = 94 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ + S D V T+ + + + RGE I+I F +F + + +R+ Sbjct: 1 MTKSELIAQLAGRHSQFSIADIEMAVKTILDALAKNLSRGERIEIRGFGSFSLSFRPARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V++ + V FKA L+ R+ Sbjct: 61 GRNPKSGERVQVPAKYVPHFKAGKELRDRV 90 >gi|167771525|ref|ZP_02443578.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM 17241] gi|167666165|gb|EDS10295.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM 17241] Length = 92 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++++ GLS+KDS + V + I ++ G+ + + F TF K + R G Sbjct: 1 MTKAELITAVAEKSGLSKKDSEKAVGAIVETITEALKAGDKVALVGFGTFETKHRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + I V F A LK + Sbjct: 61 INPITQKPITIAAATVPAFSAGKALKDAVAG 91 >gi|114048970|ref|YP_739520.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|113890412|gb|ABI44463.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] Length = 90 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ +++ ++ R + + I +S G+ I I F +F + +R G Sbjct: 1 MNKTELIAKIAENADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSIRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I V FKA L+ + Sbjct: 61 RNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90 >gi|322417739|ref|YP_004196962.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320124126|gb|ADW11686.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 94 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV++++K + + + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVEAVAKSANIPKAAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI +V F+ LK I + Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAIAAKKK 94 >gi|298528155|ref|ZP_07015559.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511807|gb|EFI35709.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K +++E LS +++T VT F+ + ++ G+ ++I F +F +K+ G Sbjct: 1 MNKSELIKRLAEERDLSLEEATEIVTIFFDSMKEALQNGDRVEIRGFGSFKIKEYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V + P+R+ F+A LK+ + Sbjct: 61 RNPKTGKPVNVSPKRLPFFRAGKELKEYLN 90 >gi|71908179|ref|YP_285766.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71847800|gb|AAZ47296.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 126 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ +++ F L +KD+ VT + I + V G ++I F F + + R Sbjct: 1 MTRSELIALLAERFPQLVQKDAEMAVTEILGAIHAALVHGYRVEIRGFGVFDLNHRTPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 RN +T + V + + V FKA L++R+M + ++ D Sbjct: 61 ARNPKTGEPVAVPAKWVPAFKAGKELRERVMASVSPQRLLIDQPA 105 >gi|117618262|ref|YP_856345.1| integration host factor subunit beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166918537|sp|A0KJ94|IHFB_AERHH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|117559669|gb|ABK36617.1| integration host factor, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 94 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ ++ + KD + + ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91 >gi|209523054|ref|ZP_03271611.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] gi|209496641|gb|EDZ96939.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] Length = 98 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ S + G+++K + ++ + I D+ GE + + F +F + + +R G Sbjct: 1 MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVAEGEKVTLVGFGSFEARHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T Q + I V F A K+R+ ++ Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANESN 94 >gi|329119849|ref|ZP_08248523.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC BAA-1200] gi|327464005|gb|EGF10316.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC BAA-1200] Length = 89 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++E +S+ + + + + N I + +G+ + + F +F+V ++ R G Sbjct: 1 MNKSELIEAMAQEADISKAAAAKALDGMVNAITAALKKGDTVTVVGFGSFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F+A LK + Sbjct: 61 RNPKTGEPLTIAAAKTPKFRAGKTLKDAL 89 >gi|320528391|ref|ZP_08029553.1| DNA-binding protein HU [Solobacterium moorei F0204] gi|320131305|gb|EFW23873.1| DNA-binding protein HU [Solobacterium moorei F0204] Length = 94 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 52/94 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+ + + + ++++ L++K++ + +F+ + + G + IS F F VK + Sbjct: 1 MAETLNKKSIAELVAEKHNLTKKEAAEIIDLVFDTVSGTLKDGGRVDISGFGKFEVKTRA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R G N QT + + I +V FKA+ LK+ + Sbjct: 61 ARTGINPQTKETITIPESKVPGFKAAKNLKELVK 94 >gi|16125619|ref|NP_420183.1| integration host factor alpha-subunit [Caulobacter crescentus CB15] gi|221234370|ref|YP_002516806.1| integration host factor subunit alpha [Caulobacter crescentus NA1000] gi|81782690|sp|Q9A8I3|IHFA_CAUCR RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803513|sp|B8H546|IHFA_CAUCN RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|13422723|gb|AAK23351.1| integration host factor alpha-subunit [Caulobacter crescentus CB15] gi|220963542|gb|ACL94898.1| integration host factor alpha-subunit [Caulobacter crescentus NA1000] Length = 100 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 63/96 (65%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR+DL +++ +E GL+R+D V + + ++ +GE +K+S F F V+ K +R+ Sbjct: 5 TLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEQGETVKLSGFGVFQVRAKRARM 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN +T + +I+PRRV+ F+AS ++K RI + G Sbjct: 65 GRNPKTGEPAEIEPRRVIGFRASQVMKARIDRALGG 100 >gi|254461470|ref|ZP_05074886.1| integration host factor, alpha subunit [Rhodobacterales bacterium HTCC2083] gi|206678059|gb|EDZ42546.1| integration host factor, alpha subunit [Rhodobacteraceae bacterium HTCC2083] Length = 92 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 59/90 (65%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL +++ +E GLSR +S V + + D+ V GE +KISSF TF V+ K +RVGRN + Sbjct: 2 DLSEAVFREVGLSRNESAELVENILTHLSDALVEGEQVKISSFGTFSVRDKAARVGRNPK 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T QEV I+PRRV+ F+ S ++K R+ + Sbjct: 62 TGQEVPINPRRVLTFRPSHLMKDRVASGNK 91 >gi|325983776|ref|YP_004296177.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] gi|325533295|gb|ADZ28015.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] Length = 93 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ ++ +T + L I ++ G +++ F TF V ++ SR G Sbjct: 1 MNKTELIEAVATRSQTTKTQTTALLNGLLEVIQETIASGNDVQLVGFGTFSVTERTSREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN T + + I ++VV FK L Sbjct: 61 RNPATGETITIPAKKVVKFKPGKALSDA 88 >gi|254437270|ref|ZP_05050764.1| integration host factor, beta subunit [Octadecabacter antarcticus 307] gi|198252716|gb|EDY77030.1| integration host factor, beta subunit [Octadecabacter antarcticus 307] Length = 93 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L +I+++ L ++D R V T+F + ++ G+ +++ F F VK++ +R+ Sbjct: 1 MIRSELTDTIAEQNPHLYQRDVERIVNTIFERVIEAMSNGDRVELRGFGAFSVKKRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+++ + V FK +L+ R+ Sbjct: 61 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRLNG 92 >gi|170078570|ref|YP_001735208.1| DNA-binding protein HU [Synechococcus sp. PCC 7002] gi|169886239|gb|ACA99952.1| DNA-binding protein HU [Synechococcus sp. PCC 7002] Length = 92 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++++ G+S+K + ++ I ++ G+ + + F +F + + +R G Sbjct: 1 MNKGELVDLVAEKAGISKKQADSVISATVEAIMETVANGDKVTLVGFGSFEPRHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN++++I V F A K+ + Sbjct: 61 RNPKTNEKMQIPATTVPAFSAGKQFKEMVA 90 >gi|56460462|ref|YP_155743.1| nucleoid DNA-binding protein, IHF beta subunit [Idiomarina loihiensis L2TR] gi|81678412|sp|Q5QZ46|IHFB_IDILO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|56179472|gb|AAV82194.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit [Idiomarina loihiensis L2TR] Length = 93 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L++ ++ + L K V + ++ S +G+ ++I F +F + + RVG Sbjct: 1 MTKSELIERLTLKHELPPKQVEASVKEILEQMVQSLSQGKRVEIRGFGSFSLHYRAPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V++D + V FKA L++R+ Sbjct: 61 RNPKTGDPVELDGKYVPHFKAGKELRERV 89 >gi|290473874|ref|YP_003466748.1| integration host factor (IHF) subunit beta, site-specific recombination [Xenorhabdus bovienii SS-2004] gi|289173181|emb|CBJ79954.1| integration host factor (IHF), beta subunit, site-specific recombination [Xenorhabdus bovienii SS-2004] Length = 96 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++++ + K V + + + ++ GE I++ F +F + + RV Sbjct: 1 MTKSELIERLTEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R+ Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91 >gi|218886875|ref|YP_002436196.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757829|gb|ACL08728.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 91 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+++++E L +D+T V T F+ + D+ + G+ ++I F +F +K G Sbjct: 1 MNKSELVRALAEEHELPVEDATVVVNTFFDCVRDALLEGDRVEIRGFGSFKIKGYRGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T V + P+R+ VF+A LK + Sbjct: 61 RNPKTGDSVAVPPKRLPVFRAGKELKDILN 90 >gi|300692112|ref|YP_003753107.1| integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum PSI07] gi|299079172|emb|CBJ51840.1| Integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum PSI07] Length = 140 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + +RV FKA L++R+ + Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97 >gi|169350609|ref|ZP_02867547.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552] gi|169292663|gb|EDS74796.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552] Length = 103 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++S+SKE L++KD+ V T+FN I S + G+ + IS F TF V + +R G Sbjct: 14 MNKKELIESVSKERNLTKKDAEILVDTVFNTITRSVIEGDKVLISGFGTFKVNDRKARKG 73 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + +T +E+ I + V FK S+ LK + Sbjct: 74 ISPKTQEEMIIPASKTVTFKPSNRLKDAMN 103 >gi|83311280|ref|YP_421544.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82946121|dbj|BAE50985.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 92 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F TF V + +R G Sbjct: 1 MNKSELIAAVADGANMTKADAASAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 91 >gi|148264197|ref|YP_001230903.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146397697|gb|ABQ26330.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] Length = 91 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ + GLS K + + +F+ + ++ + G+ I+I F +F VK + G Sbjct: 1 MNKSELIEALATKKGLSYKKAEEIINVIFDSMTNALLDGDRIEIRGFGSFVVKGYQAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKVSG 91 >gi|257455759|ref|ZP_05620985.1| integration host factor subunit alpha [Enhydrobacter aerosaccus SK60] gi|257446773|gb|EEV21790.1| integration host factor subunit alpha [Enhydrobacter aerosaccus SK60] Length = 105 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 58/96 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T+ +++ + + G++R+DS FV F+E+ ++ +G +K+S F F +K K Sbjct: 7 GKTLTKLEMINHLMENLGMTRQDSRAFVENFFSELSETLTKGHQVKLSGFGNFEIKDKSQ 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R GRN +T + V + RRVV FKA +++ I D + Sbjct: 67 RPGRNPKTGEMVHVTARRVVTFKAGQKMRRSIEDKL 102 >gi|74317692|ref|YP_315432.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] gi|74057187|gb|AAZ97627.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ +S+ + R + + + + +G+ + + F +F+V ++ +R G Sbjct: 1 MNKSELIDAIADSADVSKAAAGRALEATVDAVKKALKKGDIVTLVGFGSFYVGKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+A LK + Sbjct: 61 RNPRTGASIKIKAAKVPKFRAGKGLKDALN 90 >gi|284050974|ref|ZP_06381184.1| nucleoid protein Hbs [Arthrospira platensis str. Paraca] gi|291567416|dbj|BAI89688.1| DNA-binding protein [Arthrospira platensis NIES-39] Length = 98 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ S + G+++K + ++ + I D+ GE + + F +F + + +R G Sbjct: 1 MNKEQLVQETSIKAGVTKKQADAIISAICECIMDAVADGEKVTLVGFGSFEARHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T Q + I V F A K+R+ ++ Sbjct: 61 RNPSTGQPMTIPATTVPAFSAGKAFKERVANESN 94 >gi|157961895|ref|YP_001501929.1| integration host factor subunit beta [Shewanella pealeana ATCC 700345] gi|189045045|sp|A8H4A7|IHFB_SHEPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|157846895|gb|ABV87394.1| integration host factor, beta subunit [Shewanella pealeana ATCC 700345] Length = 95 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ D+ G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLETGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK L++R+ Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90 >gi|260219735|emb|CBA26580.1| DNA-binding protein HU-beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+K +S+ +TR + + + + +G + + F TF V ++ +R G Sbjct: 1 MNKTELIEHIAKHADISKAAATRALESTIGAVKTTLKKGGTVSLVGFGTFAVGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFRPGKALKDALN 90 >gi|229593397|ref|YP_002875516.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25] gi|312963898|ref|ZP_07778369.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6] gi|229365263|emb|CAY53586.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25] gi|311281933|gb|EFQ60543.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6] Length = 91 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDTVN 90 >gi|535709|gb|AAA65948.1| HU protein [Pseudomonas aeruginosa] Length = 89 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF VK+ +R G Sbjct: 1 MNKSELIDAIAASADIPKDVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKEPAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI ++ FKA LK + Sbjct: 61 RNPQTGKPIKIAA-KIPGFKAGKALKDAVN 89 >gi|300704749|ref|YP_003746352.1| integration host factor subunit beta [Ralstonia solanacearum CFBP2957] gi|299072413|emb|CBJ43758.1| Integration host factor subunit beta (IHF-beta) [Ralstonia solanacearum CFBP2957] Length = 140 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + +RV FKA L++R+ + Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97 >gi|332520714|ref|ZP_08397176.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] gi|332044067|gb|EGI80262.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++++ G+++ S + + EI + +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTDLIDAMAEHAGITKAASKKALECALIEIEGALQKGDRVSLVGFGSWSVSKRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L + Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDLANAVN 90 >gi|217076815|ref|YP_002334531.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B] gi|217036668|gb|ACJ75190.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B] Length = 92 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +++ +LV I+++ L +KD V +F I D+ +GE +++ F TF V++ R Sbjct: 1 MSKKELVNMIAEKIPELKKKDIKAVVDAVFESISDALAKGEKVQLIGFGTFEVRKAEERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N +T +++KI R+V FK LK+++ Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKVNK 92 >gi|189423310|ref|YP_001950487.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189419569|gb|ACD93967.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 91 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 57/91 (62%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I G+++K+S V +F+ + + GE +KIS F +F VKQK R G Sbjct: 1 MTKADIVEKIHTNTGMTQKESAEMVEAVFSIMKSTLETGETLKISGFGSFVVKQKNDRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I+ RR++ FK S++L+ I Sbjct: 61 RNPQTGEAITIEARRILTFKPSTVLRDAINK 91 >gi|253996687|ref|YP_003048751.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] gi|253983366|gb|ACT48224.1| histone family protein DNA-binding protein [Methylotenera mobilis JLW8] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ G+S+ + R + I + +G+ + + F TF+V ++ +R G Sbjct: 1 MNKSELIDEIASAAGISKAAAGRALDATTAAITKAIKKGDLVTLIGFGTFYVGKREARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI F+A LK + Sbjct: 61 RNPRTGETIKIQAANSPKFRAGKALKDAVN 90 >gi|150003567|ref|YP_001298311.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482] gi|254881205|ref|ZP_05253915.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA] gi|294777624|ref|ZP_06743075.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|319640215|ref|ZP_07994941.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A] gi|149931991|gb|ABR38689.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482] gi|254833998|gb|EET14307.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA] gi|294448692|gb|EFG17241.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|317388202|gb|EFV69055.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ E GLS+ D+ + V + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALQEGDKVSLIGFGTFSVAERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + I ++V FK + L I Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAIK 90 >gi|88803467|ref|ZP_01118993.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii 23-P] gi|88781033|gb|EAR12212.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii 23-P] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ + G+S+ + + + I S + E + + F TF V ++ +R G Sbjct: 1 MNKSDLIDAMAADAGISKVAAKAALESFTTHITSSLQKKEKVALVGFGTFSVSERAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I + V FKA + L + Sbjct: 61 RNPQTGATIQISAKNVAKFKAGAGLSDAVN 90 >gi|295689080|ref|YP_003592773.1| integration host factor subunit alpha [Caulobacter segnis ATCC 21756] gi|295430983|gb|ADG10155.1| integration host factor, alpha subunit [Caulobacter segnis ATCC 21756] Length = 100 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 62/96 (64%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+TR+DL +++ +E GL+R+D V + + ++ +GE +K+S F F V+ K + Sbjct: 3 GSTLTRADLCEAVHEEVGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRSKRA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+GRN +T + +I+PRRV+ F+AS ++K RI + Sbjct: 63 RMGRNPKTGEPAEIEPRRVIGFRASQVMKARIDRAL 98 >gi|162148929|ref|YP_001603390.1| integration host factor subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209545315|ref|YP_002277544.1| integration host factor subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|189045037|sp|A9H0B5|IHFB_GLUDA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|161787506|emb|CAP57102.1| putative integration host factor beta-subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209532992|gb|ACI52929.1| integration host factor, beta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 98 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L +D V T+F+EI + RG+ +++ F F VK++ +R Sbjct: 1 MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T + V +D + V FKA L++R+ + Sbjct: 61 GRNPRTGEMVAVDEKVVPFFKAGKELRERVNNGAPAE 97 >gi|117924422|ref|YP_865039.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] gi|117608178|gb|ABK43633.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ K+++ GLS+ D+ + + F I D+ G +++ F TF V ++ +R G Sbjct: 1 MNLTEMKKTVADATGLSQADADKAIKASFAAIQDALAGGATVQLPGFGTFSVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E++I + V FKA LK + D Sbjct: 61 RNPQTGAEIQIAASKSVKFKAGKNLKDALND 91 >gi|302670433|ref|YP_003830393.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302394906|gb|ADL33811.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 92 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+KE GLS+KD+ + + + + +++ F TF ++ +R G Sbjct: 1 MNKTELIDAIAKEAGLSKKDAAAALNAFTDTVTKELKKKGKVQLVGFGTFETTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT +KI FKA LK + Sbjct: 61 KNPQTGAAIKIPASVAPKFKAGKALKDLVNK 91 >gi|294676676|ref|YP_003577291.1| integration host factor subunit beta [Rhodobacter capsulatus SB 1003] gi|547714|sp|Q06607|IHFB_RHOCA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|294661|gb|AAA03551.1| HIP [Rhodobacter capsulatus] gi|294475496|gb|ADE84884.1| integration host factor, beta subunit [Rhodobacter capsulatus SB 1003] Length = 95 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ I++E L ++D + V T+F EI ++ RG+ +++ F F VK++ +R Sbjct: 1 MIRSELIAKIAEENPHLFQRDVEKIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V +D + V FK +L+ R+ Sbjct: 61 GRNPRTGTSVAVDEKHVPFFKTGKLLRDRLNGGEE 95 >gi|255021995|ref|ZP_05294002.1| integration host factor, alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254968563|gb|EET26118.1| integration host factor, alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 101 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 50/88 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ DL + G + ++ V F+ I ++ RGE +K+S F F ++ K +R Sbjct: 2 TVTKLDLTNHLYDTIGFKKAEAAELVDLFFDTIRETLARGEEVKLSGFGNFTLRDKRARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN +T + V+I RRVV F AS +LK Sbjct: 62 GRNPRTRELVEISARRVVTFHASPVLKA 89 >gi|325678265|ref|ZP_08157893.1| DNA-binding protein HU-beta [Ruminococcus albus 8] gi|324110028|gb|EGC04216.1| DNA-binding protein HU-beta [Ruminococcus albus 8] Length = 92 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ G S+K++ + + + + I D+ +GE + + F TF V+ + ++V Sbjct: 1 MNKAELINVIAEKGGYSKKEADKALAAVLDSITDALEKGEKVTLVGFGTFEVRDRAAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T V + R+V FKA S LK + Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALKAAVDK 91 >gi|94971730|ref|YP_593778.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|94553780|gb|ABF43704.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 93 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+ G+S+ ++ + L + + S +GE + + F TF V Q+ +R G Sbjct: 1 MNKADLVDKIAAASGISKTSASEAIDALVDGVTTSLKKGERVTLVGFGTFAVSQRRARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT +KI R+V F LKK + Sbjct: 61 RNPQTGSVIKIAARKVAKFTPGVELKKAVNKS 92 >gi|226946851|ref|YP_002801924.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226721778|gb|ACO80949.1| histone-like bacterial DNA-binding protein [Azotobacter vinelandii DJ] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+R + R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPELAAAIAEKTDLTRDQANRVLNAMLEEITSALNRKDSVTLVGFGTFVQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q VKI V FK L+ + Sbjct: 61 KNPQTGQPVKIRASNTVAFKPGKSLRDAVN 90 >gi|309389063|gb|ADO76943.1| bacterial nucleoid protein Hbs [Halanaerobium praevalens DSM 2228] Length = 99 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 54/97 (55%), Gaps = 8/97 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--------EAIKISSFATFHV 56 +T+++L+ ++++ G+++KD+ V + I + + +++ F TF V Sbjct: 1 MTKNELIDVVAEKTGVTKKDTGEVVNETIDTIMNYLKSEAKKDEDNRDNVQLIGFGTFEV 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 K + +R GRN QT +E++I R+V VF++ K+ + Sbjct: 61 KDRSARKGRNPQTGEELQIPARKVPVFRSGKSFKETV 97 >gi|149372186|ref|ZP_01891456.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified eubacterium SCB49] gi|149354953|gb|EDM43515.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified eubacterium SCB49] Length = 90 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++++ G+++ + + + + + S +G + + F ++ V ++ +R G Sbjct: 1 MNKSDLIDAMAEDAGVTKAAAKKALESFLGNVEGSLKKGNRVSLVGFGSWSVTKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L+ + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSDLQSSVN 90 >gi|239994306|ref|ZP_04714830.1| integration host factor subunit beta [Alteromonas macleodii ATCC 27126] Length = 95 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K+ + L ++ + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLADQARHIPAKELELAIKELLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + VK+D + V FK L++R+ + Sbjct: 61 GRNPKTGETVKLDGKYVPHFKPGKELRERVDASIA 95 >gi|224542695|ref|ZP_03683234.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM 15897] gi|224524405|gb|EEF93510.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM 15897] Length = 91 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+ +++ L++ D+ R + L + + + V G+ + + TF V+++ +R G Sbjct: 1 MKKNELVEKVAEGASLTKADAERAINALVDAVSGALVEGDKVALKGLGTFEVRERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I +V FKASS LK + Sbjct: 61 INPRTRETIEIPASKVPAFKASSTLKDAVNK 91 >gi|296445655|ref|ZP_06887610.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296256900|gb|EFH03972.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 131 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 42/95 (44%), Positives = 63/95 (66%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +S T+TR+DL ++ + GLSR +S FV + +EI + V G+ +K+SSF +FH++ K Sbjct: 29 LSHTVTRADLADAVHQRIGLSRTESAEFVEMVLSEIFQAIVAGDDVKLSSFGSFHIRWKN 88 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RVGRN +T I RRVV+FKAS++L+ RI Sbjct: 89 ERVGRNPKTGAAAPISARRVVMFKASNVLRARING 123 >gi|83749857|ref|ZP_00946825.1| Integration host factor beta-subunit [Ralstonia solanacearum UW551] gi|207725367|ref|YP_002255763.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum MolK2] gi|207743934|ref|YP_002260326.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum IPO1609] gi|83723470|gb|EAP70680.1| Integration host factor beta-subunit [Ralstonia solanacearum UW551] gi|206590603|emb|CAQ37565.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum MolK2] gi|206595336|emb|CAQ62263.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia solanacearum IPO1609] Length = 140 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + +RV FKA L++R+ + Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97 >gi|328951805|ref|YP_004369139.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328452129|gb|AEB07958.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 90 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +++ + L++ ++ + + L + S + I F V ++ R G Sbjct: 1 MTKADLISAMAAQANLTKAETEKTLNALITVMTSSLQTDGKLSIPGLGVFSVNERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + ++I ++V FK LK+ + Sbjct: 61 RNPRTGEPMQIAASKMVKFKPGKALKEAV 89 >gi|89901030|ref|YP_523501.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens T118] gi|89345767|gb|ABD69970.1| bacterial nucleoid protein Hbs [Rhodoferax ferrireducens T118] Length = 112 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ +TR + + + + +G ++ + F TF V ++ +RVG Sbjct: 23 VNKTELIEHIALNADISKAAATRALESAIGAVKITLKKGGSVSLVGFGTFAVGKRAARVG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F+ LK + Sbjct: 83 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 112 >gi|282899711|ref|ZP_06307675.1| Histone-like protein DNA-binding protein [Cylindrospermopsis raciborskii CS-505] gi|281195590|gb|EFA70523.1| Histone-like protein DNA-binding protein [Cylindrospermopsis raciborskii CS-505] Length = 94 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + ++ + I ++ G+ + + F +F + + +R G Sbjct: 1 MNKGELVDAVAEKANVTKKQADAVLSAAIDTIVEAVASGDKVTLVGFGSFESRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKVA 90 >gi|161525426|ref|YP_001580438.1| integration host factor subunit beta [Burkholderia multivorans ATCC 17616] gi|189349837|ref|YP_001945465.1| integration host factor subunit beta [Burkholderia multivorans ATCC 17616] gi|221201262|ref|ZP_03574302.1| integration host factor, beta subunit [Burkholderia multivorans CGD2M] gi|221206284|ref|ZP_03579297.1| integration host factor, beta subunit [Burkholderia multivorans CGD2] gi|221213565|ref|ZP_03586539.1| integration host factor, beta subunit [Burkholderia multivorans CGD1] gi|226709776|sp|A9ADV3|IHFB_BURM1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|160342855|gb|ABX15941.1| integration host factor, beta subunit [Burkholderia multivorans ATCC 17616] gi|189333859|dbj|BAG42929.1| integration host factor beta subunit [Burkholderia multivorans ATCC 17616] gi|221166354|gb|EED98826.1| integration host factor, beta subunit [Burkholderia multivorans CGD1] gi|221173593|gb|EEE06027.1| integration host factor, beta subunit [Burkholderia multivorans CGD2] gi|221179112|gb|EEE11519.1| integration host factor, beta subunit [Burkholderia multivorans CGD2M] Length = 107 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V++ + V FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADEP 103 >gi|307547003|ref|YP_003899482.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581] gi|307219027|emb|CBV44297.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581] Length = 91 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I++ LS+ +++ + + +EI S G+ + + F TF V+++ +R G Sbjct: 1 MRKPELAAAIAERADLSKDKASQVLNVILDEITGSVSDGKDVSLIGFGTFTVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT + + I + V FK LK + Sbjct: 61 KNPQTGEPLTIPASKTVAFKPGKGLKDAVTK 91 >gi|291434889|ref|YP_003518271.1| DNA-binding protein Hu-beta [Cupriavidus metallidurans CH34] gi|288259483|gb|ADC45367.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding protein) [Cupriavidus metallidurans CH34] Length = 144 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++ GL++ + + + + I ++ RGE + + F TF ++G R+ Sbjct: 1 MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +E++++ + V FKA K + Sbjct: 61 ARNPRTGEEIRVEAAKTVKFKAGQRFKDAVNGG 93 >gi|291279805|ref|YP_003496640.1| integration host factor, subunit beta [Deferribacter desulfuricans SSM1] gi|290754507|dbj|BAI80884.1| integration host factor, beta subunit [Deferribacter desulfuricans SSM1] Length = 97 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ I++++ L++K V +FN I ++ GE ++I F +F ++QK ++V Sbjct: 1 MTKSQLIEIITEKYPKLTKKQIEFIVNGVFNTIKEALKNGEPVEIRGFGSFKIRQKEAKV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V+I ++V FK +K+++++ Sbjct: 61 GRNPKTGETVQIPAKKVPYFKPGKEIKEQLIE 92 >gi|162148845|ref|YP_001603306.1| integration host factor alpha-subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209545407|ref|YP_002277636.1| integration host factor subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161787422|emb|CAP57017.1| putative integration host factor alpha-subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209533084|gb|ACI53021.1| integration host factor, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 105 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+TR+ L + I + GLSR +S + + + G +KIS F TF V+QKG Sbjct: 1 MS-TVTRASLAEHIYSQVGLSRNESADLLEHVLERVAKELESGNTVKISGFGTFSVRQKG 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN +T EV I PR V+VF+ S +L+ R+ Sbjct: 60 RRTGRNPKTGVEVPILPRSVLVFRPSQLLRARVNGG 95 >gi|148826992|ref|YP_001291745.1| integration host factor subunit alpha [Haemophilus influenzae PittGG] gi|166918507|sp|A5UF06|IHFA_HAEIG RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148718234|gb|ABQ99361.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG] Length = 96 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEK 94 >gi|114327968|ref|YP_745125.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] gi|114316142|gb|ABI62202.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] Length = 97 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ E L R + + V + I + R E +++ F +F V + + VG Sbjct: 1 MNKMELITAVADELELPRSRAAQAVDAVLGSIESALKRHEEVRLVGFGSFSVASRKASVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I P V FKA LK + + Sbjct: 61 RNPRTGEEIAIPPALSVRFKAGKTLKDALNE 91 >gi|242279062|ref|YP_002991191.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121956|gb|ACS79652.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 91 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+KS+++E GL +S V + I ++ VRG+ ++I F +F +K+ G Sbjct: 1 MNKSELIKSLAEEKGLHVDESAEIVDAFVDAIKEALVRGDRVEIRGFGSFKMKEYKGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T V + P+++ F+ LK+ + Sbjct: 61 RNPKTGDVVDVTPKKLPFFRPGKELKEYLN 90 >gi|215486037|ref|YP_002328468.1| integration host factor subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|254803532|sp|B7UMZ8|IHFB_ECO27 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|215264109|emb|CAS08453.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli O127:H6 str. E2348/69] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKDMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|229825973|ref|ZP_04452042.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC 49176] gi|229789715|gb|EEP25829.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC 49176] Length = 95 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ L + D+ + V + + + +G +++ F TF V ++ +R G Sbjct: 1 MNKAELVSAIAEKTELKKVDAEKAVKAFVDVVTEELKKGGKVQLVGFGTFEVSKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + +KI FKA LK I + Sbjct: 61 RNPQTKKTIKIPASNAAKFKAGKALKDAINTKTK 94 >gi|330503833|ref|YP_004380702.1| integration host factor subunit alpha [Pseudomonas mendocina NK-01] gi|328918119|gb|AEB58950.1| integration host factor subunit alpha [Pseudomonas mendocina NK-01] Length = 92 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 47/85 (55%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + + + +E GL+++++ V F EI + E +K+S F F ++ K R GRN +T Sbjct: 1 MAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRPGRNPKT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I RRVV F+ LK R+ Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVE 85 >gi|161503890|ref|YP_001571002.1| integration host factor subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189045041|sp|A9MHX0|IHFB_SALAR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|160865237|gb|ABX21860.1| hypothetical protein SARI_01980 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|148263975|ref|YP_001230681.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146397475|gb|ABQ26108.1| bacterial nucleoid protein Hbs [Geobacter uraniireducens Rf4] Length = 91 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++++ G+++ D+ + V I D +G+ + + F TF ++ +R G Sbjct: 1 MTKTDLVNAVAEIAGITKVDAEKSVKAFLEAITDCLTKGDKLTLVGFGTFSTAKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT +++ I FKA + LK + Sbjct: 61 QNPQTGKKIDIPASVNPKFKAGNTLKTLVN 90 >gi|149912348|ref|ZP_01900906.1| putative integration host factor, beta subunit [Moritella sp. PE36] gi|149804574|gb|EDM64647.1| putative integration host factor, beta subunit [Moritella sp. PE36] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + L+ KD V + +++ D+ G+ I+I F +F + + R+ Sbjct: 1 MTKSELIERLCTANSQLATKDVELSVKAILDQMVDTLATGDRIEIRGFGSFSLHYREPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN ++ ++V+++ + V FK L+ R+ + Sbjct: 61 GRNPKSGEKVELEGKYVPHFKPGKELRDRVNASL 94 >gi|320355050|ref|YP_004196389.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320123552|gb|ADW19098.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 95 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 56/92 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ + +++ T+ + D+ RGE+I+I F +F VK+ S G Sbjct: 1 MNKSELIEALAEAMNIPIREAASITNTIIETMSDALARGESIEIRGFGSFVVKEYESYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +++K+ P+++ FK L++++ + Sbjct: 61 RNPKTGEKIKVKPKKLPFFKVGKDLREQVNKN 92 >gi|32472422|ref|NP_865416.1| DNA-binding protein HU [Rhodopirellula baltica SH 1] gi|32443658|emb|CAD73100.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1] gi|327538485|gb|EGF25149.1| DNA-binding protein HU [Rhodopirellula baltica WH47] Length = 139 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++V+ IS+E GL+++++ V F+ I ++ VR I++ +F F VK + +R Sbjct: 1 MTKKEIVRVISEELGLTQQETKEVVQRTFDSIVETLVREGRIELRNFGVFEVKPRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T Q+V + + VV FK ++++R+ Sbjct: 61 RNPKTGQQVDVPEKYVVTFKPGKVMEQRVRQ 91 >gi|291614517|ref|YP_003524674.1| integration host factor, subunit beta [Sideroxydans lithotrophicus ES-1] gi|291584629|gb|ADE12287.1| integration host factor, beta subunit [Sideroxydans lithotrophicus ES-1] Length = 95 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+ ++ L KD+ V + + + + G I+I F +F + + R+ Sbjct: 1 MTRSDLIAKLADRYTQLLGKDAELAVKVILDSMSATLSHGGRIEIRGFGSFALNYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ +V++ + V FKA L++R+ Sbjct: 61 GRNPKSGDKVQVPAKYVPHFKAGKELRERV 90 >gi|94270519|ref|ZP_01291761.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93450767|gb|EAT01823.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 91 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E +S+ + + V +F+ + ++ +GE I F TF + + ++ Sbjct: 1 MNKKELVEKLAAEGEISKAAADKLVKGVFDNMAEALAKGEKITFPGFGTFETRDRAAKES 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V++ R+ V FK LK ++ Sbjct: 61 RNPRTGEPVQVPARKAVAFKPGKTLKDQVNK 91 >gi|56475921|ref|YP_157510.1| integration host factor subunit beta [Aromatoleum aromaticum EbN1] gi|56311964|emb|CAI06609.1| integration host factor beta-subunit [Aromatoleum aromaticum EbN1] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ F L KD+ V + + + ++ RG+ I+I F +F + + RV Sbjct: 1 MTKSELIARLAARFPQLVAKDADYAVKMVIDAMSEALARGDRIEIRGFGSFALNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ +V + + V FKA L++R+ Sbjct: 61 GRNPKSGDKVLVPEKYVPHFKAGKELRERV 90 >gi|28199336|ref|NP_779650.1| integration host factor subunit beta [Xylella fastidiosa Temecula1] gi|71898751|ref|ZP_00680920.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1] gi|182682061|ref|YP_001830221.1| integration host factor subunit beta [Xylella fastidiosa M23] gi|32129615|sp|Q87BJ8|IHFB_XYLFT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709821|sp|B2I6X0|IHFB_XYLF2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|28057442|gb|AAO29299.1| integration host factor, beta subunit [Xylella fastidiosa Temecula1] gi|71731516|gb|EAO33578.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1] gi|182632171|gb|ACB92947.1| integration host factor, beta subunit [Xylella fastidiosa M23] gi|307578329|gb|ADN62298.1| integration host factor subunit beta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 104 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++K L D V +L + + G+ I+I F +F + + R Sbjct: 1 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSGGDRIEIRGFGSFSLHYRPPRC 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + V + + V FK L++R+ + +C Sbjct: 61 GRNPKTGESVALPGKYVPHFKPGKELRERVASVVPLGECGD 101 >gi|242239664|ref|YP_002987845.1| integration host factor subunit beta [Dickeya dadantii Ech703] gi|242131721|gb|ACS86023.1| integration host factor, beta subunit [Dickeya dadantii Ech703] Length = 95 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEEAVKEMLEQMATTLADGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V ++ + V FK L+ R Sbjct: 61 GRNPKTGEKVDLEGKYVPHFKPGKELRDRAN 91 >gi|186475512|ref|YP_001856982.1| integration host factor subunit beta [Burkholderia phymatum STM815] gi|226709782|sp|B2JF07|IHFB_BURP8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|184191971|gb|ACC69936.1| integration host factor, beta subunit [Burkholderia phymatum STM815] Length = 107 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V + + V FK L++R+ D G D Sbjct: 61 GRNPKSGEKVLVPEKHVPHFKPGKELRERV-DRNAGEPLKADAA 103 >gi|330994450|ref|ZP_08318375.1| Integration host factor subunit beta [Gluconacetobacter sp. SXCC-1] gi|329758450|gb|EGG74969.1| Integration host factor subunit beta [Gluconacetobacter sp. SXCC-1] Length = 105 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 1/101 (0%) Query: 2 SKTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +TRS+L+ ++ L ++ R V +F E+ ++ +RG+ +++ F F VK++ Sbjct: 5 GNRMTRSELIAELAAARPHLPVREVERIVQVIFAEVSNALMRGDRVELRGFGAFTVKKRD 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +R GRN +T + V +D + V FKA L++R+ ++ Sbjct: 65 ARTGRNPRTGETVSVDEKVVPFFKAGKELRERVNRAHGTKE 105 >gi|239617732|ref|YP_002941054.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239506563|gb|ACR80050.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 90 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I++ +++KD+ + + + + I + GE +++ F TF V ++ R G Sbjct: 1 MNKKELVAAIAERTHMTKKDAGKILDAIIDIIEEKLAGGEVVRLVGFGTFSVVKRKPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + +KI +V F LK ++ Sbjct: 61 VNPRTKEPIKIPGGKVPKFIPGKELKDKVK 90 >gi|116515025|ref|YP_802654.1| hypothetical protein BCc_084 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285579|sp|Q057Y8|IHFA_BUCCC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|116256879|gb|ABJ90561.1| integration host factor alpha-subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 104 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 53/100 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++ + + LS+++ V F E+ S GE++K+S F F+++ K R G Sbjct: 3 LTKAEISDYLFHKLELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN +T + + I RRVVVFK L+ R+ +K Sbjct: 63 RNPKTGEYIPISARRVVVFKPGQKLRSRVESFKDIKKEKD 102 >gi|303327383|ref|ZP_07357824.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] gi|302862323|gb|EFL85256.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] Length = 90 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ I+ + L++ + R + + DS + + ++ F TF V+ + +R G Sbjct: 1 MTKADLVEKIAAKANLTKAAAERALNAFLASVEDSLSKEAKLTLTGFGTFAVESRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I ++V F+ +LK + Sbjct: 61 RNPRTGATLTIPACKMVKFRPGKMLKDALN 90 >gi|187927876|ref|YP_001898363.1| integration host factor subunit beta [Ralstonia pickettii 12J] gi|187724766|gb|ACD25931.1| integration host factor, beta subunit [Ralstonia pickettii 12J] Length = 142 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + D+ G I+I F +F + ++ RV Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V + +RV FKA L++R+ + Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLE 97 >gi|218245818|ref|YP_002371189.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|257058864|ref|YP_003136752.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] gi|218166296|gb|ACK65033.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|256589030|gb|ACU99916.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] Length = 98 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV I+ + +++KD+++ + L I ++ GE + + F TF + + R G Sbjct: 1 MNKEDLVNMIAAKTRITKKDTSQILDALTETIMETVASGEKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT Q + I V F A + K+++++ Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKEQVVN 91 >gi|146311088|ref|YP_001176162.1| integration host factor subunit beta [Enterobacter sp. 638] gi|166918547|sp|A4W8T1|IHFB_ENT38 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|145317964|gb|ABP60111.1| integration host factor, beta subunit [Enterobacter sp. 638] Length = 95 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91 >gi|78048051|ref|YP_364226.1| integration host factor subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036481|emb|CAJ24172.1| Integration host factor beta subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 113 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 11 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 70 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T + V + + V FK L++R Sbjct: 71 GRNPKTGESVALPGKHVPHFKPGKELRER 99 >gi|237808313|ref|YP_002892753.1| integration host factor, beta subunit [Tolumonas auensis DSM 9187] gi|259492039|sp|C4LF00|IHFB_TOLAT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|237500574|gb|ACQ93167.1| integration host factor, beta subunit [Tolumonas auensis DSM 9187] Length = 93 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ +S + L+ KD V + + + G I+I F +F + + RV Sbjct: 1 MTKSDLIERLSSSQQHLAAKDVEAAVREILECMAATLESGNRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V++ + V FK L++R+ Sbjct: 61 GRNPKTGEKVELLAKSVPHFKPGKELRERVN 91 >gi|152979083|ref|YP_001344712.1| integration host factor, alpha subunit [Actinobacillus succinogenes 130Z] gi|171704314|sp|A6VP80|IHFA_ACTSZ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|150840806|gb|ABR74777.1| integration host factor, alpha subunit [Actinobacillus succinogenes 130Z] Length = 98 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 54/95 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ ++ ++++++ L++ ++ V + F EI + G +K+S F F ++ K SR Sbjct: 2 TLTKVEIAENLTRKLELNKTEAKAMVESFFEEIRATLADGHNVKLSGFGNFELRDKASRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + + + RRVVVF+ L+ R+ Sbjct: 62 GRNPKTGENIPVSARRVVVFRPGQKLRARVEKSKP 96 >gi|114330422|ref|YP_746644.1| integration host factor, beta subunit [Nitrosomonas eutropha C91] gi|122314557|sp|Q0AIZ2|IHFB_NITEC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114307436|gb|ABI58679.1| integration host factor, beta subunit [Nitrosomonas eutropha C91] Length = 105 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + S RGE I+I F +F + + SRV Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 GRN ++ ++V + + V FKA +++ I + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQHNLLDQATG 105 >gi|285018379|ref|YP_003376090.1| integration host factor beta-subunit (ihf-beta) protein [Xanthomonas albilineans GPE PC73] gi|283473597|emb|CBA16100.1| integration host factor beta-subunit (ihf-beta) protein [Xanthomonas albilineans] Length = 101 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++++ L D V +L + + GE I+I F +F + + R+ Sbjct: 1 MTKSELIEILARKQVHLKSDDVDLAVKSLLEMMGGALSGGERIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FK L++R+ Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90 >gi|197116588|ref|YP_002137015.1| histone-like protein [Geobacter bemidjiensis Bem] gi|253698824|ref|YP_003020013.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|197085948|gb|ACH37219.1| histone-like protein [Geobacter bemidjiensis Bem] gi|251773674|gb|ACT16255.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV++++K + + + + V + + + +G+ + + F +F V + +R G Sbjct: 1 MTKAELVEAVAKSANIPKGAAEKAVGAFISSVSGALKKGDRVTLVGFGSFEVASRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI +V F+ LK I + Sbjct: 61 RNPQTGKEIKIAEAKVPKFRPGKALKDAIAAKKK 94 >gi|260597310|ref|YP_003209881.1| integration host factor subunit beta [Cronobacter turicensis z3032] gi|260216487|emb|CBA29645.1| Integration host factor subunit beta [Cronobacter turicensis z3032] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|222055876|ref|YP_002538238.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|221565165|gb|ACM21137.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 91 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++ + GLS K + + ++F + ++ + G+ I+I F +F VK S +G Sbjct: 1 MNKSELIEALAAKKGLSYKKAEEIINSIFESMTNALLTGDRIEIRGFGSFVVKSYQSYMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESIAVKSKKLPFFKVGKELKEKVSG 91 >gi|16759852|ref|NP_455469.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764342|ref|NP_459957.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142375|ref|NP_805717.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413968|ref|YP_151043.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179506|ref|YP_215923.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146401|ref|YP_001453720.1| integration host factor subunit beta [Citrobacter koseri ATCC BAA-895] gi|161614782|ref|YP_001588747.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553021|ref|ZP_02346771.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994928|ref|ZP_02576018.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233395|ref|ZP_02658453.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237083|ref|ZP_02662141.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243747|ref|ZP_02668679.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263526|ref|ZP_02685499.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466573|ref|ZP_02700435.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822093|ref|ZP_02834093.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442716|ref|YP_002040180.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450144|ref|YP_002044974.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470393|ref|ZP_03076377.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734686|ref|YP_002114033.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248861|ref|YP_002145900.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263951|ref|ZP_03164025.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362891|ref|YP_002142528.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243808|ref|YP_002214906.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390103|ref|ZP_03216714.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929822|ref|ZP_03220843.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352189|ref|YP_002225990.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856373|ref|YP_002243024.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023562|ref|ZP_03338009.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161606|ref|ZP_03347316.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416827|ref|ZP_03349971.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424599|ref|ZP_03357382.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579894|ref|ZP_03361720.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213649374|ref|ZP_03379427.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852006|ref|ZP_03381538.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582791|ref|YP_002636589.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913245|ref|ZP_04657082.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283784738|ref|YP_003364603.1| integration host factor beta-subunit (IHF-beta) [Citrobacter rodentium ICC168] gi|289825855|ref|ZP_06545023.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|54037414|sp|P64395|IHFB_SALTI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|54041369|sp|P64394|IHFB_SALTY RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|75505813|sp|Q57R19|IHFB_SALCH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81677856|sp|Q5PGG9|IHFB_SALPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918543|sp|A8AIH1|IHFB_CITK8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045042|sp|A9N7V2|IHFB_SALPB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709805|sp|B5F165|IHFB_SALA4 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709806|sp|B5FQ55|IHFB_SALDC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709807|sp|B5QZB6|IHFB_SALEP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709808|sp|B5R8J9|IHFB_SALG2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709809|sp|B4TD42|IHFB_SALHS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709810|sp|B4T146|IHFB_SALNS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709811|sp|B5BBP5|IHFB_SALPK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709812|sp|B4TRU3|IHFB_SALSV RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803539|sp|C0PXU8|IHFB_SALPC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|25294355|pir||AD0614 integration host factor beta-chain (IHF-beta) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419494|gb|AAL19916.1| integration host factor (IHF), beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502145|emb|CAD05382.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138005|gb|AAO69566.1| integration host factor beta-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128225|gb|AAV77731.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127139|gb|AAX64842.1| integration host factor (IHF), beta subunit; site-specific recombination [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157083606|gb|ABV13284.1| hypothetical protein CKO_02160 [Citrobacter koseri ATCC BAA-895] gi|161364146|gb|ABX67914.1| hypothetical protein SPAB_02534 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401379|gb|ACF61601.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408448|gb|ACF68667.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456757|gb|EDX45596.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710188|gb|ACF89409.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630987|gb|EDX49573.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094368|emb|CAR59881.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212564|gb|ACH49961.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242206|gb|EDY24826.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289888|gb|EDY29249.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938324|gb|ACH75657.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602548|gb|EDZ01094.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320816|gb|EDZ06017.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271970|emb|CAR36814.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322456|gb|EDZ10295.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327271|gb|EDZ14035.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332451|gb|EDZ19215.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337151|gb|EDZ23915.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341519|gb|EDZ28283.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347707|gb|EDZ34338.1| integration host factor, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708176|emb|CAR32469.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467318|gb|ACN45148.1| integration host factor beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246198|emb|CBG24002.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992720|gb|ACY87605.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|282948192|emb|CBG87759.1| integration host factor beta-subunit (IHF-beta) [Citrobacter rodentium ICC168] gi|301157525|emb|CBW17015.1| integration host factor beta-subunit (IHF-beta) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911968|dbj|BAJ35942.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085221|emb|CBY95007.1| Integration host factor subunit beta IHF-beta [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223305|gb|EFX48374.1| Integration host factor beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616412|gb|EFY13321.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619662|gb|EFY16537.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622642|gb|EFY19487.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629791|gb|EFY26566.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632487|gb|EFY29233.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637018|gb|EFY33721.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641442|gb|EFY38080.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646092|gb|EFY42608.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649606|gb|EFY46037.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654092|gb|EFY50415.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658624|gb|EFY54886.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663481|gb|EFY59683.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670217|gb|EFY66357.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671453|gb|EFY67575.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676809|gb|EFY72876.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682734|gb|EFY78753.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686413|gb|EFY82395.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713975|gb|EFZ05546.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129247|gb|ADX16677.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195936|gb|EFZ81103.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199776|gb|EFZ84865.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202769|gb|EFZ87805.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209040|gb|EFZ93977.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211516|gb|EFZ96355.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217999|gb|EGA02714.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219928|gb|EGA04404.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226704|gb|EGA10900.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229801|gb|EGA13924.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233026|gb|EGA17122.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240761|gb|EGA24803.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243077|gb|EGA27098.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249760|gb|EGA33662.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252767|gb|EGA36605.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254795|gb|EGA38596.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260004|gb|EGA43632.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267995|gb|EGA51474.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269842|gb|EGA53291.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622659|gb|EGE29004.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627233|gb|EGE33576.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987873|gb|AEF06856.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 94 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|325925940|ref|ZP_08187308.1| integration host factor, beta subunit [Xanthomonas perforans 91-118] gi|325543663|gb|EGD15078.1| integration host factor, beta subunit [Xanthomonas perforans 91-118] Length = 103 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +++ L D V +L + + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T + V + + V FK L++R Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRER 89 >gi|56550597|ref|YP_161663.1| DNA-binding protein HU-beta [Cupriavidus metallidurans CH34] gi|56410303|emb|CAI30185.1| hypothetical DNA-binding protein HU-beta NS1 [Cupriavidus metallidurans CH34] Length = 158 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++ GL++ + + + + I ++ RGE + + F TF ++G R+ Sbjct: 15 MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 74 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +E++++ + V FKA K + Sbjct: 75 ARNPRTGEEIRVEAAKTVKFKAGQRFKDAVNGG 107 >gi|134290950|ref|YP_001114719.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] gi|134134139|gb|ABO58464.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] Length = 92 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G+S+ D+++ V + + I D+ R EA+++ F F Q+ +R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T +E+ I V F A K + Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVNGS 92 >gi|297624967|ref|YP_003706401.1| histone family protein DNA-binding protein [Truepera radiovictrix DSM 17093] gi|297166147|gb|ADI15858.1| histone family protein DNA-binding protein [Truepera radiovictrix DSM 17093] Length = 99 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 54/93 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT++++DLV ++++ G+ +KD V T+ +++ G+ ++++ F TF V+++ + Sbjct: 4 AKTVSKADLVDKVAEDTGMRKKDVKTIVDTMIDQVSQHLNNGDKVQLTGFGTFEVRERRA 63 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R G T + ++I + FK LK++I Sbjct: 64 RTGVKPGTTERIEIPASKYPAFKPGKALKEKIE 96 >gi|152969496|ref|YP_001334605.1| integration host factor subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893968|ref|YP_002918702.1| integration host factor subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|262040989|ref|ZP_06014211.1| integration host factor subunit beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330014029|ref|ZP_08307845.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3] gi|166918553|sp|A6T704|IHFB_KLEP7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150954345|gb|ABR76375.1| integration host factor beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546284|dbj|BAH62635.1| integration host factor beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041683|gb|EEW42732.1| integration host factor subunit beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533286|gb|EGF60038.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3] Length = 95 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|53717643|ref|YP_106629.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243] gi|53723975|ref|YP_104420.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344] gi|67643053|ref|ZP_00441802.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4] gi|121599876|ref|YP_994676.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1] gi|124384371|ref|YP_001027609.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229] gi|126442121|ref|YP_001057059.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668] gi|126450406|ref|YP_001082492.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247] gi|126453925|ref|YP_001064289.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a] gi|134281504|ref|ZP_01768212.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305] gi|167001301|ref|ZP_02267100.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20] gi|167582881|ref|ZP_02375755.1| DNA-binding protein HU-alpha [Burkholderia thailandensis TXDOH] gi|167621021|ref|ZP_02389652.1| DNA-binding protein HU-alpha [Burkholderia thailandensis Bt4] gi|167717366|ref|ZP_02400602.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei DM98] gi|167736410|ref|ZP_02409184.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 14] gi|167813485|ref|ZP_02445165.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 91] gi|167822026|ref|ZP_02453497.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 9] gi|167834839|ref|ZP_02461722.1| DNA-binding protein HU-alpha [Burkholderia thailandensis MSMB43] gi|167843639|ref|ZP_02469147.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei B7210] gi|167892111|ref|ZP_02479513.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 7894] gi|167900623|ref|ZP_02487828.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei NCTC 13177] gi|167908846|ref|ZP_02495937.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 112] gi|167921116|ref|ZP_02508207.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei BCC215] gi|217424016|ref|ZP_03455516.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576] gi|226193072|ref|ZP_03788682.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan 9] gi|237814395|ref|YP_002898846.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346] gi|242314515|ref|ZP_04813531.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b] gi|254174725|ref|ZP_04881386.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399] gi|254184070|ref|ZP_04890661.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655] gi|254186534|ref|ZP_04893051.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur 52237] gi|254194585|ref|ZP_04901016.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13] gi|254201495|ref|ZP_04907859.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH] gi|254206834|ref|ZP_04913185.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU] gi|254260815|ref|ZP_04951869.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a] gi|254298660|ref|ZP_04966111.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e] gi|254357388|ref|ZP_04973662.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280] gi|14194657|sp|Q9ZF89|DBHA_BURPS RecName: Full=DNA-binding protein HU-alpha gi|4139233|gb|AAD05170.1| DbhB [Burkholderia pseudomallei 1026b] gi|52208057|emb|CAH33987.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243] gi|52427398|gb|AAU47991.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344] gi|121228686|gb|ABM51204.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1] gi|124292391|gb|ABN01660.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229] gi|126221614|gb|ABN85120.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668] gi|126227567|gb|ABN91107.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a] gi|126243276|gb|ABO06369.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247] gi|134247171|gb|EBA47257.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305] gi|147747389|gb|EDK54465.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH] gi|147752376|gb|EDK59442.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU] gi|148026452|gb|EDK84537.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280] gi|157808487|gb|EDO85657.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e] gi|157934219|gb|EDO89889.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur 52237] gi|160695770|gb|EDP85740.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399] gi|169651335|gb|EDS84028.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13] gi|184214602|gb|EDU11645.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655] gi|217393079|gb|EEC33101.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576] gi|225934672|gb|EEH30649.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan 9] gi|237505255|gb|ACQ97573.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346] gi|238524297|gb|EEP87730.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4] gi|242137754|gb|EES24156.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b] gi|243062917|gb|EES45103.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20] gi|254219504|gb|EET08888.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a] Length = 92 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+++++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >gi|119774872|ref|YP_927612.1| integration host factor subunit beta [Shewanella amazonensis SB2B] gi|166975887|sp|A1S6D6|IHFB_SHEAM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119767372|gb|ABL99942.1| integration host factor, beta subunit [Shewanella amazonensis SB2B] Length = 95 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ V + ++ + GE I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAVKEMLEQMATTLESGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK L++R+ Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90 >gi|113866825|ref|YP_725314.1| integration host factor subunit beta [Ralstonia eutropha H16] gi|113525601|emb|CAJ91946.1| integration host factor beta subunit [Ralstonia eutropha H16] Length = 140 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV+ ++ F L +D+ V T+ + + ++ G I+I F +F + ++ RV Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN ++ + V + +RV FKA L++R+ Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRSQPAPPGAN 101 >gi|117924551|ref|YP_865168.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117926183|ref|YP_866800.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117608307|gb|ABK43762.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609939|gb|ABK45394.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++L K+++++ +S+ D+ + + F I D+ GE +++ F TF + ++ +R G Sbjct: 1 MKMAELKKAVAEKAEMSQSDANQVIKACFEAISDALGNGETVQLPGFGTFSLGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT E++I + V FKA LK + Sbjct: 61 RNPQTGAEIQIAASKSVKFKAGKALKDSLNG 91 >gi|296116409|ref|ZP_06835023.1| integration host factor subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295977002|gb|EFG83766.1| integration host factor subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 98 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L +D + V T+F+EI + RG+ +++ F F VK++ SR Sbjct: 1 MTKSELIAELAAANPHLPARDIEQIVQTIFHEISAALARGDRVELRGFGAFTVKKRDSRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V ++ + V FKA L++R+ Sbjct: 61 GRNPRTGEIVAVEEKVVPFFKAGKELRERVN 91 >gi|118578624|ref|YP_899874.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118501334|gb|ABK97816.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 91 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 59/91 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I G+++K+S + T+F+ + + GE +KIS F +F VKQK +R G Sbjct: 1 MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I+ RRV+ FK S++L+ I Sbjct: 61 RNPQTGETITIEARRVLSFKPSTVLRDVINK 91 >gi|294084820|ref|YP_003551580.1| integration host factor subunit beta [Candidatus Puniceispirillum marinum IMCC1322] gi|292664395|gb|ADE39496.1| integration host factor, beta subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 92 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ + L +D R V T+ +EI + RG+ +++ F F V+ + +R+ Sbjct: 1 MTRSELIARMAAKNPALYHRDIERLVGTILDEISGALERGDRVELRGFGAFSVRHRKARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V++ ++V FK +++R+ Sbjct: 61 GRNPRTGTSVQVAEKKVPFFKMGKGMRERLN 91 >gi|198283154|ref|YP_002219475.1| integration host factor subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667528|ref|YP_002425383.1| integration host factor, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247675|gb|ACH83268.1| integration host factor, beta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519741|gb|ACK80327.1| integration host factor, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 101 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 3/101 (2%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+K+IS + LS +D + + + D+ GE I+I F +F + + ++ Sbjct: 1 MTKSELIKNISAQYPHLSVRDIEMATRQMLDYLSDALAEGERIEIRGFGSFSMHVRPAKQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM--DDMRGRKC 102 GRN +T + V + +RV FK L++++ + + G K Sbjct: 61 GRNPKTGEPVLVPEKRVPHFKPGKELREQVDYPEAVAGGKA 101 >gi|254252926|ref|ZP_04946244.1| Integration host factor [Burkholderia dolosa AUO158] gi|124895535|gb|EAY69415.1| Integration host factor [Burkholderia dolosa AUO158] Length = 107 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + D+ +G I+I F +F + ++ +RV Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V++ + V FK L++R+ D G D+ Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERV-DGRAGEPLKADEP 103 >gi|270160386|ref|ZP_06189035.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|308051556|ref|YP_003915130.1| HU, DNA-binding transcriptional regulator, beta subunit [Legionella longbeachae NSW150] gi|269987096|gb|EEZ93358.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968] gi|288859981|emb|CBJ13969.1| HU, DNA-binding transcriptional regulator, beta subunit [Legionella longbeachae NSW150] Length = 92 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +IS GLS+ DS + + + + + +G++I + FA+ VK+ +R G Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T Q ++I +VV FK + LK+ I Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAING 91 >gi|189424985|ref|YP_001952162.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421244|gb|ACD95642.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 92 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++++ GL + ++ + V + + +G+ + + F TF ++ +R G Sbjct: 1 MTKAELITAVAEKAGLKKVEAEKAVAAFVSAVTGCLKQGDKLSLVGFGTFSTSKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT +++ I V FK LK+ + Sbjct: 61 QNPQTGKKITIAAATVPKFKPGKTLKEAVNG 91 >gi|53715702|ref|YP_101694.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46] gi|60683640|ref|YP_213784.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis NCTC 9343] gi|253566484|ref|ZP_04843937.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5] gi|265767353|ref|ZP_06095019.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|52218567|dbj|BAD51160.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46] gi|60495074|emb|CAH09893.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis NCTC 9343] gi|251944656|gb|EES85131.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5] gi|263252658|gb|EEZ24170.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|301165152|emb|CBW24722.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis 638R] Length = 90 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + F+ + + G+ I + F TF V ++ +R+G Sbjct: 1 MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + ++I ++V FK + L I Sbjct: 61 INPSTKKAIEIPAKKVAKFKPGAELTDAIK 90 >gi|237711513|ref|ZP_04541994.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA] gi|237726030|ref|ZP_04556511.1| DNA-binding protein HU-beta [Bacteroides sp. D4] gi|265752938|ref|ZP_06088507.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA] gi|229435838|gb|EEO45915.1| DNA-binding protein HU-beta [Bacteroides dorei 5_1_36/D4] gi|229454208|gb|EEO59929.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA] gi|263236124|gb|EEZ21619.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA] Length = 90 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ E GLS+ D+ + V + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKADLISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + I ++V FK + L I Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAIK 90 >gi|167560912|ref|ZP_02353828.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis EO147] gi|167571802|ref|ZP_02364676.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis C6786] Length = 92 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I S +G+++++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKSVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >gi|253700777|ref|YP_003021966.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|251775627|gb|ACT18208.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 91 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ + LS K + V +F + D+ + G+ I+I F +F VK+ + G Sbjct: 1 MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGFGSFVVKEYDAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89 >gi|193215171|ref|YP_001996370.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] gi|193088648|gb|ACF13923.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 100 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 53/94 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+ GL+++++ V + ++ GE I+I F T++V++K R+ Sbjct: 1 MTKADIVSIIASRTGLTKQETETVVDGFIEAVIEALKAGERIEIRGFGTYNVRKKNKRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T ++V ID + V FK S K + D + Sbjct: 61 RNPRTGEKVVIDEKYVPTFKISKEFKSAVSDSYK 94 >gi|319943162|ref|ZP_08017445.1| integration host factor beta subunit [Lautropia mirabilis ATCC 51599] gi|319743704|gb|EFV96108.1| integration host factor beta subunit [Lautropia mirabilis ATCC 51599] Length = 116 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+S+L+ +++ F L KD+ V T+ + + S I+I F TF + + SR Sbjct: 17 TMTKSELIAKLAERFPQLVAKDAEYAVRTILDAMARSLADRHRIEIRGFGTFALSHRHSR 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +GRN ++ + V + + V FK L++ + + Sbjct: 77 MGRNPKSGEPVPVPEKLVPHFKPGKQLRESVDRALHA 113 >gi|95930236|ref|ZP_01312974.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95133699|gb|EAT15360.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 91 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++S E L+ K + V +F+ + V+G I+I F +F VK S G Sbjct: 1 MNKSELIEALSLEKDLTYKRAEEIVNLMFDSMTQELVKGGRIEIRGFGSFVVKDYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +++ +++ FK L++R+ + Sbjct: 61 RNPKTGEAIQVKTKKLPFFKVGKELRERVDN 91 >gi|110598177|ref|ZP_01386454.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340191|gb|EAT58689.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 91 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++++L++ I+ + L++ D+ R +T + S G + ++ F TF + +R G Sbjct: 1 MSKAELIEKIAAQAKLTKADADRALTAFIGIVKASLKNGNDVPLAGFGTFATVDRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I ++VV F+ LK + Sbjct: 61 RNPQTGKTITIAAKKVVKFRPGKSLKDEV 89 >gi|28872577|ref|NP_795196.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000] gi|28855832|gb|AAO58891.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 21 MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 80 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 81 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 110 >gi|156934598|ref|YP_001438514.1| integration host factor subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156532852|gb|ABU77678.1| hypothetical protein ESA_02432 [Cronobacter sakazakii ATCC BAA-894] Length = 100 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 7 MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 67 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 97 >gi|82703454|ref|YP_413020.1| histone-like DNA-binding protein [Nitrosospira multiformis ATCC 25196] gi|82411519|gb|ABB75628.1| bacterial nucleoid protein Hbs [Nitrosospira multiformis ATCC 25196] Length = 90 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+K +S+ + + I + +G+++ + F TF V + +R G Sbjct: 1 MNKAELIDAIAKSSDISKASAGNALDGALEAIKAALKKGQSVTLVGFGTFKVGTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I+ +V F A LK + Sbjct: 61 RNPRTGAAITIESTKVPKFIAGKALKDAVN 90 >gi|71066548|ref|YP_265275.1| integration host factor subunit alpha [Psychrobacter arcticus 273-4] gi|123775561|sp|Q4FQ67|IHFA_PSYA2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|71039533|gb|AAZ19841.1| histone-like bacterial DNA-binding protein [Psychrobacter arcticus 273-4] Length = 99 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 1/97 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+T+SD+++ + L+R++ V F+E+ +S + G+ +K+S F F +K K Sbjct: 1 MS-TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKN 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 SR GRN +T + V + RRVV FK ++++ + + Sbjct: 60 SRPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVDERL 96 >gi|93007121|ref|YP_581558.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] gi|123264368|sp|Q1Q8C9|IHFA_PSYCK RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|92394799|gb|ABE76074.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] Length = 99 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 1/97 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+T+SD+++ + L+R++ V F+E+ +S + G+ +K+S F F +K K Sbjct: 1 MS-TLTKSDMIEHLMNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKN 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 SR GRN +T + V + RRVV FK ++++ + + Sbjct: 60 SRPGRNPKTGEPVAVSARRVVTFKTGQKFRQQVDERL 96 >gi|220924844|ref|YP_002500146.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] gi|219949451|gb|ACL59843.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] Length = 105 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 45/95 (47%), Positives = 62/95 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KTITR+DL +++ + GLSR +S V T+ +EIC GE +K+SSF +F V+ +G Sbjct: 3 GKTITRADLTEAVHQRVGLSRAESAALVETVLSEICTCLASGEGVKLSSFGSFVVRDRGK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN T EV I PRRV+VFK S++LK + Sbjct: 63 RVGRNPTTRVEVAIAPRRVMVFKPSNLLKAHVNGG 97 >gi|332342355|gb|AEE55689.1| integration host factor, beta subunit IhfB [Escherichia coli UMNK88] Length = 94 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPVKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|271500809|ref|YP_003333834.1| integration host factor subunit beta [Dickeya dadantii Ech586] gi|307130807|ref|YP_003882823.1| integration host factor (IHF), DNA-binding protein, subunit beta [Dickeya dadantii 3937] gi|585307|sp|P37983|IHFB_DICD3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|399670|emb|CAA52770.1| integration host factor beta subunit [Erwinia chrysanthemi] gi|270344364|gb|ACZ77129.1| integration host factor, beta subunit [Dickeya dadantii Ech586] gi|306528336|gb|ADM98266.1| integration host factor (IHF), DNA-binding protein, beta subunit [Dickeya dadantii 3937] gi|1093153|prf||2103145B integration host factor Length = 94 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMATTLASGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V+++ + V FK L+ R Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91 >gi|291287622|ref|YP_003504438.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290884782|gb|ADD68482.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 90 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I++ GL + D+ + + + + + + + F TF V ++ R G Sbjct: 1 MNKKELIEKIAEMAGLKKSDAEKALKAFEDATVAALKADDKVTLVGFGTFSVSERKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I ++V F + K I Sbjct: 61 RNPQTGAEMTIPAKKVPKFTPGKLFKDSI 89 >gi|187924976|ref|YP_001896618.1| integration host factor subunit beta [Burkholderia phytofirmans PsJN] gi|226709783|sp|B2T634|IHFB_BURPP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|187716170|gb|ACD17394.1| integration host factor, beta subunit [Burkholderia phytofirmans PsJN] Length = 107 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLAARFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V + + V FK L++R+ D G ++ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEEP 103 >gi|206575911|ref|YP_002239439.1| integration host factor, beta subunit [Klebsiella pneumoniae 342] gi|288936290|ref|YP_003440349.1| integration host factor subunit beta [Klebsiella variicola At-22] gi|290510655|ref|ZP_06550025.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55] gi|226709796|sp|B5XY84|IHFB_KLEP3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|206564969|gb|ACI06745.1| integration host factor, beta subunit [Klebsiella pneumoniae 342] gi|288890999|gb|ADC59317.1| integration host factor, beta subunit [Klebsiella variicola At-22] gi|289777371|gb|EFD85369.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55] Length = 95 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|332294986|ref|YP_004436909.1| histone family protein DNA-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178089|gb|AEE13778.1| histone family protein DNA-binding protein [Thermodesulfobium narugense DSM 14796] Length = 106 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++DL+ +++++ G+++KD T V +F+ I D+ R E +++ F TF V+++ R Sbjct: 1 MRKTDLINAVAEKCKGMTKKDCTVVVEAVFDSIKDALKRNEKVQLIGFGTFEVRERKERK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN ++ +E+ I + FKA LK+ + Sbjct: 61 GRNPRSKEEIVIPAMKTPGFKAGKALKEAVQ 91 >gi|261339246|ref|ZP_05967104.1| hypothetical protein ENTCAN_05482 [Enterobacter cancerogenus ATCC 35316] gi|296103086|ref|YP_003613232.1| integration host factor subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|288319103|gb|EFC58041.1| integration host factor, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|295057545|gb|ADF62283.1| integration host factor subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295096387|emb|CBK85477.1| integration host factor, beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 95 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLASQQPHIPAKAVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|311280174|ref|YP_003942405.1| integration host factor, beta subunit [Enterobacter cloacae SCF1] gi|308749369|gb|ADO49121.1| integration host factor, beta subunit [Enterobacter cloacae SCF1] Length = 94 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + RV Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|118594371|ref|ZP_01551718.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium HTCC2181] gi|118440149|gb|EAV46776.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium HTCC2181] Length = 90 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+++++ G ++ ++ R + + + +G+++ + F TF V ++ +R G Sbjct: 1 MNKGELIEAVASATGSTKAEAGRAIDATVAAVTGALKKGDSVTLIGFGTFKVAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+KI R V FKA + LK + Sbjct: 61 RNPQTGAELKIAARTVPSFKAGAALKAAVN 90 >gi|150026047|ref|YP_001296873.1| histone-like DNA-binding protein HU-beta [Flavobacterium psychrophilum JIP02/86] gi|39653976|gb|AAR29587.1| Fp91 [Flavobacterium psychrophilum] gi|149772588|emb|CAL44071.1| Histone-like bacterial DNA-binding protein HU-beta [Flavobacterium psychrophilum JIP02/86] Length = 91 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++S G+++ + + + I ++ +G + + F ++ V + +R G Sbjct: 1 MNKSDLIDAMSASAGITKAAAKLALESFLGNIEETLQKGGRVSLVGFGSWSVSNRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +KI + VV FKA + L+ + Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELEIAVNK 91 >gi|150020327|ref|YP_001305681.1| histone family protein DNA-binding protein [Thermosipho melanesiensis BI429] gi|149792848|gb|ABR30296.1| histone family protein DNA-binding protein [Thermosipho melanesiensis BI429] Length = 92 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +++ +LV ++++ L +KD + +F I D+ GE +++ F TF V++ R Sbjct: 1 MSKKELVNMVAEKMPELKKKDIKAVIDAVFEAISDALANGERVQLIGFGTFEVRKAEERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N +T +++KI R+V FK LK+++ Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKVNK 92 >gi|46202642|ref|ZP_00208599.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 91 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +++ G ++ D+ + +F I + G+ +++ F +F + + ++ G Sbjct: 1 MNKADLVSKVAELAGCTKADADKVTDAVFAAITSALKVGDEVRLVGFGSFSITNRAAKDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +KI + F A LK + Sbjct: 61 RNPRTGATIKIAASKAPKFSAGKALKDAVNG 91 >gi|225025737|ref|ZP_03714929.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC 23834] gi|224941518|gb|EEG22727.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC 23834] Length = 100 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 6/100 (6%) Query: 5 ITRSDLVKSISKE------FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ ++++ L+ KD + V L + + + RG+ I+I F +F + Sbjct: 1 MTKSELMAHLAEKYLAQGHSRLAVKDVEQSVKVLVDAMTRALARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + +R+GRN +T ++V + + V FKA L++R+ + Sbjct: 61 RPARIGRNPKTGEKVNVPEKYVPHFKAGKELRERVDQAAK 100 >gi|317491459|ref|ZP_07949895.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921006|gb|EFV42329.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ L K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMATTLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|149185138|ref|ZP_01863455.1| integration host factor beta-subunit [Erythrobacter sp. SD-21] gi|148831249|gb|EDL49683.1| integration host factor beta-subunit [Erythrobacter sp. SD-21] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ +I++ L ++ + V F EI G +++ F F +++ +R Sbjct: 2 MIRSELLTAIAEDNSDLRAEEVEQVVDIFFEEISQRLTEGGRVELRGFGAFSTRERQARQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + ++V FK +++R+ ++ Sbjct: 62 GRNPRTGEVVDVPAKKVPYFKPGKEIRERLNEN 94 >gi|15800773|ref|NP_286787.1| integration host factor subunit beta [Escherichia coli O157:H7 EDL933] gi|15830249|ref|NP_309022.1| integration host factor subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16128879|ref|NP_415432.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|24112321|ref|NP_706831.1| integration host factor subunit beta [Shigella flexneri 2a str. 301] gi|26246937|ref|NP_752977.1| integration host factor subunit beta [Escherichia coli CFT073] gi|30062447|ref|NP_836618.1| integration host factor subunit beta [Shigella flexneri 2a str. 2457T] gi|74311469|ref|YP_309888.1| integration host factor subunit beta [Shigella sonnei Ss046] gi|82544651|ref|YP_408598.1| integration host factor subunit beta [Shigella boydii Sb227] gi|82777565|ref|YP_403914.1| integration host factor subunit beta [Shigella dysenteriae Sd197] gi|89107762|ref|AP_001542.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|91210013|ref|YP_539999.1| integration host factor subunit beta [Escherichia coli UTI89] gi|110641109|ref|YP_668839.1| integration host factor subunit beta [Escherichia coli 536] gi|110804920|ref|YP_688440.1| integration host factor subunit beta [Shigella flexneri 5 str. 8401] gi|157157201|ref|YP_001462130.1| integration host factor subunit beta [Escherichia coli E24377A] gi|157160434|ref|YP_001457752.1| integration host factor subunit beta [Escherichia coli HS] gi|168751175|ref|ZP_02776197.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168757004|ref|ZP_02782011.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168762953|ref|ZP_02787960.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168769907|ref|ZP_02794914.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168776237|ref|ZP_02801244.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168784109|ref|ZP_02809116.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168787341|ref|ZP_02812348.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168801405|ref|ZP_02826412.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC508] gi|170020686|ref|YP_001725640.1| integration host factor subunit beta [Escherichia coli ATCC 8739] gi|170080570|ref|YP_001729890.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170683232|ref|YP_001744258.1| integration host factor subunit beta [Escherichia coli SMS-3-5] gi|170769200|ref|ZP_02903653.1| integration host factor, beta subunit [Escherichia albertii TW07627] gi|187733349|ref|YP_001880893.1| integration host factor subunit beta [Shigella boydii CDC 3083-94] gi|188493972|ref|ZP_03001242.1| integration host factor, beta subunit [Escherichia coli 53638] gi|191166992|ref|ZP_03028815.1| integration host factor, beta subunit [Escherichia coli B7A] gi|191172063|ref|ZP_03033607.1| integration host factor, beta subunit [Escherichia coli F11] gi|193064687|ref|ZP_03045766.1| integration host factor, beta subunit [Escherichia coli E22] gi|193070745|ref|ZP_03051680.1| integration host factor, beta subunit [Escherichia coli E110019] gi|194428394|ref|ZP_03060935.1| integration host factor, beta subunit [Escherichia coli B171] gi|194431402|ref|ZP_03063694.1| integration host factor, beta subunit [Shigella dysenteriae 1012] gi|194438689|ref|ZP_03070776.1| integration host factor, beta subunit [Escherichia coli 101-1] gi|195940069|ref|ZP_03085451.1| integration host factor subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208809443|ref|ZP_03251780.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208814934|ref|ZP_03256113.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208822709|ref|ZP_03263028.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209396562|ref|YP_002269584.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209918162|ref|YP_002292246.1| integration host factor subunit beta [Escherichia coli SE11] gi|217325996|ref|ZP_03442080.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218553499|ref|YP_002386412.1| integration host factor subunit beta [Escherichia coli IAI1] gi|218557817|ref|YP_002390730.1| integration host factor subunit beta [Escherichia coli S88] gi|218688752|ref|YP_002396964.1| integration host factor subunit beta [Escherichia coli ED1a] gi|218694385|ref|YP_002402052.1| integration host factor subunit beta [Escherichia coli 55989] gi|218700569|ref|YP_002408198.1| integration host factor subunit beta [Escherichia coli IAI39] gi|218704339|ref|YP_002411858.1| integration host factor subunit beta [Escherichia coli UMN026] gi|227884123|ref|ZP_04001928.1| integration host factor subunit beta [Escherichia coli 83972] gi|237707100|ref|ZP_04537581.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA] gi|238900170|ref|YP_002925966.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli BW2952] gi|253774059|ref|YP_003036890.1| integration host factor subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161026|ref|YP_003044134.1| integration host factor subunit beta [Escherichia coli B str. REL606] gi|254792111|ref|YP_003076948.1| integration host factor subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256020960|ref|ZP_05434825.1| integration host factor subunit beta [Shigella sp. D9] gi|256023387|ref|ZP_05437252.1| integration host factor subunit beta [Escherichia sp. 4_1_40B] gi|260843162|ref|YP_003220940.1| integration host factor, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260854203|ref|YP_003228094.1| integration host factor, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260867084|ref|YP_003233486.1| integration host factor, beta subunit [Escherichia coli O111:H- str. 11128] gi|261227415|ref|ZP_05941696.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256162|ref|ZP_05948695.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. FRIK966] gi|291281913|ref|YP_003498731.1| Integration host factor subunit beta [Escherichia coli O55:H7 str. CB9615] gi|293404217|ref|ZP_06648211.1| ihfB [Escherichia coli FVEC1412] gi|293409289|ref|ZP_06652865.1| integration host factor [Escherichia coli B354] gi|293414192|ref|ZP_06656841.1| integration host factor [Escherichia coli B185] gi|293433209|ref|ZP_06661637.1| integration host factor [Escherichia coli B088] gi|297520621|ref|ZP_06939007.1| integration host factor subunit beta [Escherichia coli OP50] gi|298379997|ref|ZP_06989602.1| ihfB [Escherichia coli FVEC1302] gi|300816984|ref|ZP_07097203.1| integration host factor, beta subunit [Escherichia coli MS 107-1] gi|300823652|ref|ZP_07103779.1| integration host factor, beta subunit [Escherichia coli MS 119-7] gi|300901658|ref|ZP_07119718.1| integration host factor, beta subunit [Escherichia coli MS 198-1] gi|300902929|ref|ZP_07120874.1| integration host factor, beta subunit [Escherichia coli MS 84-1] gi|300921051|ref|ZP_07137437.1| integration host factor, beta subunit [Escherichia coli MS 115-1] gi|300925410|ref|ZP_07141295.1| integration host factor, beta subunit [Escherichia coli MS 182-1] gi|300929607|ref|ZP_07145069.1| integration host factor, beta subunit [Escherichia coli MS 187-1] gi|300937744|ref|ZP_07152545.1| integration host factor, beta subunit [Escherichia coli MS 21-1] gi|300949726|ref|ZP_07163704.1| integration host factor, beta subunit [Escherichia coli MS 116-1] gi|300955440|ref|ZP_07167814.1| integration host factor, beta subunit [Escherichia coli MS 175-1] gi|300978463|ref|ZP_07174278.1| integration host factor, beta subunit [Escherichia coli MS 45-1] gi|300983138|ref|ZP_07176452.1| integration host factor, beta subunit [Escherichia coli MS 200-1] gi|301022406|ref|ZP_07186289.1| integration host factor, beta subunit [Escherichia coli MS 196-1] gi|301023015|ref|ZP_07186826.1| integration host factor, beta subunit [Escherichia coli MS 69-1] gi|301047829|ref|ZP_07194880.1| integration host factor, beta subunit [Escherichia coli MS 185-1] gi|301302480|ref|ZP_07208611.1| integration host factor, beta subunit [Escherichia coli MS 124-1] gi|301326623|ref|ZP_07219956.1| integration host factor, beta subunit [Escherichia coli MS 78-1] gi|301643432|ref|ZP_07243480.1| integration host factor, beta subunit [Escherichia coli MS 146-1] gi|306812635|ref|ZP_07446828.1| integration host factor subunit beta [Escherichia coli NC101] gi|307137541|ref|ZP_07496897.1| integration host factor subunit beta [Escherichia coli H736] gi|307311701|ref|ZP_07591341.1| integration host factor, beta subunit [Escherichia coli W] gi|309787783|ref|ZP_07682393.1| integration host factor, beta subunit [Shigella dysenteriae 1617] gi|309795104|ref|ZP_07689524.1| integration host factor, beta subunit [Escherichia coli MS 145-7] gi|312969022|ref|ZP_07783229.1| integration host factor, beta subunit [Escherichia coli 2362-75] gi|312971040|ref|ZP_07785219.1| integration host factor, beta subunit [Escherichia coli 1827-70] gi|331641438|ref|ZP_08342573.1| integration host factor, beta subunit [Escherichia coli H736] gi|331646177|ref|ZP_08347280.1| integration host factor, beta subunit [Escherichia coli M605] gi|331651932|ref|ZP_08352951.1| integration host factor, beta subunit [Escherichia coli M718] gi|331656983|ref|ZP_08357945.1| integration host factor, beta subunit [Escherichia coli TA206] gi|331662325|ref|ZP_08363248.1| integration host factor, beta subunit [Escherichia coli TA143] gi|331667289|ref|ZP_08368154.1| integration host factor, beta subunit [Escherichia coli TA271] gi|331676700|ref|ZP_08377396.1| integration host factor, beta subunit [Escherichia coli H591] gi|331682419|ref|ZP_08383038.1| integration host factor, beta subunit [Escherichia coli H299] gi|332282183|ref|ZP_08394596.1| integration host factor (IHF) DNA-binding protein beta subunit [Shigella sp. D9] gi|67466112|sp|P0A6Y1|IHFB_ECOLI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|67466113|sp|P0A6Y2|IHFB_ECOL6 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|67466114|sp|P0A6Y3|IHFB_ECO57 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|67466115|sp|P0A6Y4|IHFB_SHIFL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|122990837|sp|Q1RDU6|IHFB_ECOUT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123342125|sp|Q0SX03|IHFB_SHIF8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123344183|sp|Q0TJE1|IHFB_ECOL5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123741971|sp|Q31YT8|IHFB_SHIBS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123742113|sp|Q32E32|IHFB_SHIDS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123773538|sp|Q3Z3K9|IHFB_SHISS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918545|sp|A7ZK01|IHFB_ECO24 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918546|sp|A7ZYL5|IHFB_ECOHS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045036|sp|B1IW19|IHFB_ECOLC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709786|sp|B7MHM1|IHFB_ECO45 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709787|sp|B5YT46|IHFB_ECO5E RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709788|sp|B7NM62|IHFB_ECO7I RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709789|sp|B7M841|IHFB_ECO8A RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709790|sp|B1X852|IHFB_ECODH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709791|sp|B7NAR1|IHFB_ECOLU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709792|sp|B6I8Y4|IHFB_ECOSE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709793|sp|B1LJV1|IHFB_ECOSM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709814|sp|B2TUG9|IHFB_SHIB3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803533|sp|B7LDA4|IHFB_ECO55 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803534|sp|B7MS27|IHFB_ECO81 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|259492034|sp|C4ZQ38|IHFB_ECOBW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1942276|pdb|1IHF|B Chain B, Integration Host FactorDNA COMPLEX gi|34811470|pdb|1OWG|B Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H' Site (T44a) gi|119389942|pdb|2HT0|B Chain B, Ihf Bound To Doubly Nicked Dna gi|12514078|gb|AAG55397.1|AE005280_8 integration host factor (IHF), beta subunit; site-specific recombination [Escherichia coli O157:H7 str. EDL933] gi|26107337|gb|AAN79520.1|AE016758_124 Integration host factor beta-subunit [Escherichia coli CFT073] gi|414749|emb|CAA28557.1| IHF (AA 1-93) [Escherichia coli K-12] gi|1651440|dbj|BAA35656.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K12 substr. W3110] gi|1787141|gb|AAC73998.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13360454|dbj|BAB34418.1| integration host factor (IHF) beta subunit [Escherichia coli O157:H7 str. Sakai] gi|24051181|gb|AAN42538.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a str. 301] gi|30040693|gb|AAP16424.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a str. 2457T] gi|68304094|gb|AAY89705.1| IhfB [Escherichia coli LW1655F+] gi|73854946|gb|AAZ87653.1| integration host factor (IHF), beta subunit [Shigella sonnei Ss046] gi|81241713|gb|ABB62423.1| integration host factor, beta subunit [Shigella dysenteriae Sd197] gi|81246062|gb|ABB66770.1| integration host factor (IHF), beta subunit [Shigella boydii Sb227] gi|91071587|gb|ABE06468.1| beta subunit of IHF transcriptional dual regulator [Escherichia coli UTI89] gi|110342701|gb|ABG68938.1| integration host factor beta-subunit [Escherichia coli 536] gi|110614468|gb|ABF03135.1| integration host factor beta subunit [Shigella flexneri 5 str. 8401] gi|157066114|gb|ABV05369.1| integration host factor, beta subunit [Escherichia coli HS] gi|157079231|gb|ABV18939.1| integration host factor, beta subunit [Escherichia coli E24377A] gi|169755614|gb|ACA78313.1| integration host factor, beta subunit [Escherichia coli ATCC 8739] gi|169888405|gb|ACB02112.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170121852|gb|EDS90783.1| integration host factor, beta subunit [Escherichia albertii TW07627] gi|170520950|gb|ACB19128.1| integration host factor, beta subunit [Escherichia coli SMS-3-5] gi|187430341|gb|ACD09615.1| integration host factor, beta subunit [Shigella boydii CDC 3083-94] gi|187768389|gb|EDU32233.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188014737|gb|EDU52859.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|188489171|gb|EDU64274.1| integration host factor, beta subunit [Escherichia coli 53638] gi|188998657|gb|EDU67643.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189355928|gb|EDU74347.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189361153|gb|EDU79572.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189366830|gb|EDU85246.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189372671|gb|EDU91087.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189376433|gb|EDU94849.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC508] gi|190902986|gb|EDV62712.1| integration host factor, beta subunit [Escherichia coli B7A] gi|190907590|gb|EDV67185.1| integration host factor, beta subunit [Escherichia coli F11] gi|192927744|gb|EDV82359.1| integration host factor, beta subunit [Escherichia coli E22] gi|192955938|gb|EDV86406.1| integration host factor, beta subunit [Escherichia coli E110019] gi|194413609|gb|EDX29890.1| integration host factor, beta subunit [Escherichia coli B171] gi|194420227|gb|EDX36304.1| integration host factor, beta subunit [Shigella dysenteriae 1012] gi|194422321|gb|EDX38321.1| integration host factor, beta subunit [Escherichia coli 101-1] gi|208729244|gb|EDZ78845.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208731582|gb|EDZ80270.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208738194|gb|EDZ85877.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209157962|gb|ACI35395.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209774858|gb|ACI85741.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774860|gb|ACI85742.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774862|gb|ACI85743.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774864|gb|ACI85744.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209774866|gb|ACI85745.1| integration host factor (IHF) beta subunit [Escherichia coli] gi|209911421|dbj|BAG76495.1| integration host factor beta subunit [Escherichia coli SE11] gi|217322217|gb|EEC30641.1| integration host factor, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218351117|emb|CAU96821.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli 55989] gi|218360267|emb|CAQ97817.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli IAI1] gi|218364586|emb|CAR02272.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli S88] gi|218370555|emb|CAR18362.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli IAI39] gi|218426316|emb|CAR07141.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli ED1a] gi|218431436|emb|CAR12314.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli UMN026] gi|222032643|emb|CAP75382.1| Integration host factor subunit beta [Escherichia coli LF82] gi|226898310|gb|EEH84569.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA] gi|227838875|gb|EEJ49341.1| integration host factor subunit beta [Escherichia coli 83972] gi|238861522|gb|ACR63520.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli BW2952] gi|242376727|emb|CAQ31440.1| integration host factor (IHF), beta subunit, subunit of IHF transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325103|gb|ACT29705.1| integration host factor, beta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972927|gb|ACT38598.1| integration host factor subunit beta [Escherichia coli B str. REL606] gi|253977141|gb|ACT42811.1| integration host factor subunit beta [Escherichia coli BL21(DE3)] gi|254591511|gb|ACT70872.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257752852|dbj|BAI24354.1| integration host factor, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257758309|dbj|BAI29806.1| integration host factor, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257763440|dbj|BAI34935.1| integration host factor, beta subunit [Escherichia coli O111:H- str. 11128] gi|260449942|gb|ACX40364.1| integration host factor, beta subunit [Escherichia coli DH1] gi|281178043|dbj|BAI54373.1| integration host factor beta subunit [Escherichia coli SE15] gi|281600272|gb|ADA73256.1| Integration host factor subunit beta [Shigella flexneri 2002017] gi|284920763|emb|CBG33826.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli 042] gi|290761786|gb|ADD55747.1| Integration host factor subunit beta [Escherichia coli O55:H7 str. CB9615] gi|291324028|gb|EFE63450.1| integration host factor [Escherichia coli B088] gi|291428803|gb|EFF01828.1| ihfB [Escherichia coli FVEC1412] gi|291434250|gb|EFF07223.1| integration host factor [Escherichia coli B185] gi|291469757|gb|EFF12241.1| integration host factor [Escherichia coli B354] gi|294490499|gb|ADE89255.1| integration host factor, beta subunit [Escherichia coli IHE3034] gi|298279695|gb|EFI21203.1| ihfB [Escherichia coli FVEC1302] gi|299881247|gb|EFI89458.1| integration host factor, beta subunit [Escherichia coli MS 196-1] gi|300300288|gb|EFJ56673.1| integration host factor, beta subunit [Escherichia coli MS 185-1] gi|300306972|gb|EFJ61492.1| integration host factor, beta subunit [Escherichia coli MS 200-1] gi|300317663|gb|EFJ67447.1| integration host factor, beta subunit [Escherichia coli MS 175-1] gi|300354951|gb|EFJ70821.1| integration host factor, beta subunit [Escherichia coli MS 198-1] gi|300397276|gb|EFJ80814.1| integration host factor, beta subunit [Escherichia coli MS 69-1] gi|300405071|gb|EFJ88609.1| integration host factor, beta subunit [Escherichia coli MS 84-1] gi|300409640|gb|EFJ93178.1| integration host factor, beta subunit [Escherichia coli MS 45-1] gi|300411989|gb|EFJ95299.1| integration host factor, beta subunit [Escherichia coli MS 115-1] gi|300418480|gb|EFK01791.1| integration host factor, beta subunit [Escherichia coli MS 182-1] gi|300450874|gb|EFK14494.1| integration host factor, beta subunit [Escherichia coli MS 116-1] gi|300457251|gb|EFK20744.1| integration host factor, beta subunit [Escherichia coli MS 21-1] gi|300462444|gb|EFK25937.1| integration host factor, beta subunit [Escherichia coli MS 187-1] gi|300523852|gb|EFK44921.1| integration host factor, beta subunit [Escherichia coli MS 119-7] gi|300530336|gb|EFK51398.1| integration host factor, beta subunit [Escherichia coli MS 107-1] gi|300842319|gb|EFK70079.1| integration host factor, beta subunit [Escherichia coli MS 124-1] gi|300846706|gb|EFK74466.1| integration host factor, beta subunit [Escherichia coli MS 78-1] gi|301078146|gb|EFK92952.1| integration host factor, beta subunit [Escherichia coli MS 146-1] gi|305853398|gb|EFM53837.1| integration host factor subunit beta [Escherichia coli NC101] gi|306908256|gb|EFN38755.1| integration host factor, beta subunit [Escherichia coli W] gi|307552751|gb|ADN45526.1| integration host factor, beta subunit [Escherichia coli ABU 83972] gi|307627661|gb|ADN71965.1| integration host factor subunit beta [Escherichia coli UM146] gi|308121408|gb|EFO58670.1| integration host factor, beta subunit [Escherichia coli MS 145-7] gi|308924182|gb|EFP69679.1| integration host factor, beta subunit [Shigella dysenteriae 1617] gi|309701188|emb|CBJ00488.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli ETEC H10407] gi|310336801|gb|EFQ01968.1| integration host factor, beta subunit [Escherichia coli 1827-70] gi|312286424|gb|EFR14337.1| integration host factor, beta subunit [Escherichia coli 2362-75] gi|312945432|gb|ADR26259.1| integration host factor subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313650849|gb|EFS15250.1| integration host factor, beta subunit [Shigella flexneri 2a str. 2457T] gi|315060197|gb|ADT74524.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia coli W] gi|315135560|dbj|BAJ42719.1| integration host factor subunit beta [Escherichia coli DH1] gi|315257953|gb|EFU37921.1| integration host factor, beta subunit [Escherichia coli MS 85-1] gi|315287525|gb|EFU46936.1| integration host factor, beta subunit [Escherichia coli MS 110-3] gi|315291230|gb|EFU50590.1| integration host factor, beta subunit [Escherichia coli MS 153-1] gi|315296192|gb|EFU55500.1| integration host factor, beta subunit [Escherichia coli MS 16-3] gi|315619106|gb|EFU99686.1| integration host factor, beta subunit [Escherichia coli 3431] gi|320173253|gb|EFW48462.1| Integration host factor beta subunit [Shigella dysenteriae CDC 74-1112] gi|320182020|gb|EFW56925.1| Integration host factor beta subunit [Shigella boydii ATCC 9905] gi|320184256|gb|EFW59069.1| Integration host factor beta subunit [Shigella flexneri CDC 796-83] gi|320192602|gb|EFW67243.1| Integration host factor beta subunit [Escherichia coli O157:H7 str. EC1212] gi|320196594|gb|EFW71217.1| Integration host factor beta subunit [Escherichia coli WV_060327] gi|320202308|gb|EFW76879.1| Integration host factor beta subunit [Escherichia coli EC4100B] gi|320637780|gb|EFX07572.1| integration host factor subunit beta [Escherichia coli O157:H7 str. G5101] gi|320642905|gb|EFX12106.1| integration host factor subunit beta [Escherichia coli O157:H- str. 493-89] gi|320648362|gb|EFX17017.1| integration host factor subunit beta [Escherichia coli O157:H- str. H 2687] gi|320653678|gb|EFX21752.1| integration host factor subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659823|gb|EFX27379.1| integration host factor subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320664292|gb|EFX31443.1| integration host factor subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323157201|gb|EFZ43324.1| integration host factor, beta subunit [Escherichia coli EPECa14] gi|323159538|gb|EFZ45518.1| integration host factor, beta subunit [Escherichia coli E128010] gi|323165379|gb|EFZ51166.1| integration host factor, beta subunit [Shigella sonnei 53G] gi|323174987|gb|EFZ60602.1| integration host factor, beta subunit [Escherichia coli LT-68] gi|323175465|gb|EFZ61060.1| integration host factor, beta subunit [Escherichia coli 1180] gi|323185382|gb|EFZ70746.1| integration host factor, beta subunit [Escherichia coli 1357] gi|323190732|gb|EFZ76001.1| integration host factor, beta subunit [Escherichia coli RN587/1] gi|323379243|gb|ADX51511.1| integration host factor, beta subunit [Escherichia coli KO11] gi|323938018|gb|EGB34280.1| integration host protein [Escherichia coli E1520] gi|323942828|gb|EGB38993.1| integration host protein [Escherichia coli E482] gi|323947299|gb|EGB43307.1| integration host protein [Escherichia coli H120] gi|323953381|gb|EGB49247.1| integration host protein [Escherichia coli H252] gi|323958217|gb|EGB53926.1| integration host protein [Escherichia coli H263] gi|323962904|gb|EGB58478.1| integration host protein [Escherichia coli H489] gi|323967159|gb|EGB62583.1| integration host protein [Escherichia coli M863] gi|323973213|gb|EGB68405.1| integration host protein [Escherichia coli TA007] gi|323976701|gb|EGB71789.1| integration host protein [Escherichia coli TW10509] gi|324009836|gb|EGB79055.1| integration host factor, beta subunit [Escherichia coli MS 57-2] gi|324012972|gb|EGB82191.1| integration host factor, beta subunit [Escherichia coli MS 60-1] gi|324019079|gb|EGB88298.1| integration host factor, beta subunit [Escherichia coli MS 117-3] gi|324117223|gb|EGC11131.1| integration host protein [Escherichia coli E1167] gi|326338193|gb|EGD62022.1| Integration host factor beta subunit [Escherichia coli O157:H7 str. 1125] gi|326346170|gb|EGD69908.1| Integration host factor beta subunit [Escherichia coli O157:H7 str. 1044] gi|327253702|gb|EGE65331.1| integration host factor, beta subunit [Escherichia coli STEC_7v] gi|330910692|gb|EGH39202.1| integration host factor beta subunit [Escherichia coli AA86] gi|331038236|gb|EGI10456.1| integration host factor, beta subunit [Escherichia coli H736] gi|331044929|gb|EGI17056.1| integration host factor, beta subunit [Escherichia coli M605] gi|331050210|gb|EGI22268.1| integration host factor, beta subunit [Escherichia coli M718] gi|331055231|gb|EGI27240.1| integration host factor, beta subunit [Escherichia coli TA206] gi|331060747|gb|EGI32711.1| integration host factor, beta subunit [Escherichia coli TA143] gi|331065645|gb|EGI37538.1| integration host factor, beta subunit [Escherichia coli TA271] gi|331075389|gb|EGI46687.1| integration host factor, beta subunit [Escherichia coli H591] gi|331080050|gb|EGI51229.1| integration host factor, beta subunit [Escherichia coli H299] gi|332093267|gb|EGI98327.1| integration host factor, beta subunit [Shigella boydii 5216-82] gi|332104535|gb|EGJ07881.1| integration host factor (IHF) DNA-binding protein beta subunit [Shigella sp. D9] gi|332760079|gb|EGJ90377.1| integration host factor, beta subunit [Shigella flexneri 2747-71] gi|332762681|gb|EGJ92944.1| integration host factor, beta subunit [Shigella flexneri K-671] gi|333006353|gb|EGK25861.1| integration host factor, beta subunit [Shigella flexneri VA-6] gi|333006934|gb|EGK26429.1| integration host factor, beta subunit [Shigella flexneri K-218] gi|333008890|gb|EGK28350.1| integration host factor, beta subunit [Shigella flexneri K-272] gi|333020034|gb|EGK39305.1| integration host factor, beta subunit [Shigella flexneri K-304] gi|333020200|gb|EGK39470.1| integration host factor, beta subunit [Shigella flexneri K-227] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|333029611|ref|ZP_08457672.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] gi|332740208|gb|EGJ70690.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] Length = 90 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GLS+ DS + + + + D+ G+ + + F TF V ++ +R G Sbjct: 1 MNKAELISAMAEKSGLSKVDSKKALDAFMSVVSDTLKSGDKVSLIGFGTFSVSERKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + ++I ++V FKA L + + Sbjct: 61 INPATQKPIEIPAKKVAKFKAGLDLAEAVK 90 >gi|332711135|ref|ZP_08431069.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L] gi|332350117|gb|EGJ29723.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDKVAEKATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++++I +V F A + K+R+ Sbjct: 61 RNPKTGEKMEIPATKVPAFSAGKVFKERVA 90 >gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae SmR1] gi|300072453|gb|ADJ61852.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae SmR1] Length = 115 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV I+ + +S+ + R + ++ I + +G+ +++ F +F ++ +R G Sbjct: 22 VNKSELVDVIAADTEISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +E+KI V F A K+ + + Sbjct: 82 RNPQTGEEIKIAAATTVKFSAGKAFKEAVNKKKK 115 >gi|326408175|gb|ADZ65240.1| integration host factor subunit beta [Brucella melitensis M28] gi|326537888|gb|ADZ86103.1| integration host factor, beta subunit [Brucella melitensis M5-90] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ G +++ SF F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRSFGAFSVKNRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V ++ + V FK L+ R+ + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94 >gi|254427198|ref|ZP_05040905.1| DNA-binding protein HU [Alcanivorax sp. DG881] gi|196193367|gb|EDX88326.1| DNA-binding protein HU [Alcanivorax sp. DG881] Length = 85 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ +I+ +S+ D+ R + + + + +G+++ + F TF VK++ +R GRN QT Sbjct: 1 MIDAIAASADISKADAGRALDSTLEAVTGALKKGDSVSLVGFGTFAVKRREARDGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 Q +KI V FKA LK + Sbjct: 61 GQTIKIAAANVPGFKAGKALKDAVN 85 >gi|291614503|ref|YP_003524660.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291584615|gb|ADE12273.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 53/94 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++++ G S+ D+ R + L + + + +G+ + + F TF V+++ +R G Sbjct: 1 MNRKELIDALAEKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T E+KI +V FKA + LK + + Sbjct: 61 RNPATGAELKIKASKVPAFKAGATLKATVNGTKK 94 >gi|313113523|ref|ZP_07799112.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255] gi|310624250|gb|EFQ07616.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255] Length = 89 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + + V +F + + GE I IS F TF ++++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAEQAVNAVFEALSKAMSEGEKITISGFGTFEMRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + I R +VFK LK + Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLKDTL 89 >gi|218548428|ref|YP_002382219.1| integration host factor subunit beta [Escherichia fergusonii ATCC 35469] gi|226709795|sp|B7LN74|IHFB_ESCF3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|218355969|emb|CAQ88585.1| integration host factor (IHF), DNA-binding protein, beta subunit [Escherichia fergusonii ATCC 35469] gi|324113757|gb|EGC07732.1| integration host protein [Escherichia fergusonii B253] gi|325496851|gb|EGC94710.1| integration host factor subunit beta [Escherichia fergusonii ECD227] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKVVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|237730875|ref|ZP_04561356.1| integration host factor subunit beta [Citrobacter sp. 30_2] gi|283833797|ref|ZP_06353538.1| integration host factor, beta subunit [Citrobacter youngae ATCC 29220] gi|226906414|gb|EEH92332.1| integration host factor subunit beta [Citrobacter sp. 30_2] gi|291070462|gb|EFE08571.1| integration host factor, beta subunit [Citrobacter youngae ATCC 29220] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLATQQPHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91 >gi|332534572|ref|ZP_08410407.1| integration host factor beta subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035992|gb|EGI72471.1| integration host factor beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 95 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++++ + KD V + ++ S + I+I F +F + + R Sbjct: 1 MTKSELIEILAEQHAHVPVKDVENAVKEILEQMAGSLSTSDRIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V+++ + V FK L+ R+ + + Sbjct: 61 GRNPKTGDTVELEGKHVPHFKPGKELRDRVNESIA 95 >gi|330878102|gb|EGH12251.1| DNA-binding protein HU family [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 92 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +N QT + VKI V FK LK + + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVNNS 92 >gi|227877728|ref|ZP_03995764.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256843583|ref|ZP_05549071.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN] gi|256850059|ref|ZP_05555489.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US] gi|262047347|ref|ZP_06020304.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US] gi|293381854|ref|ZP_06627823.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295693326|ref|YP_003601936.1| DNA-binding protein hu [Lactobacillus crispatus ST1] gi|227862716|gb|EEJ70199.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01] gi|256615003|gb|EEU20204.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN] gi|256713031|gb|EEU28022.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US] gi|260572321|gb|EEX28884.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US] gi|290921575|gb|EFD98608.1| DNA-binding protein HU [Lactobacillus crispatus 214-1] gi|295031432|emb|CBL50911.1| DNA-binding protein HU [Lactobacillus crispatus ST1] Length = 94 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 43/93 (46%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI++ LV I+ + ++ D + + + + G +++ F F ++ + +R Sbjct: 2 ETISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +E++I V FK K + Sbjct: 62 KGRNPQTGKEIEIAASNVPAFKPGKSFKDEVNK 94 >gi|294140846|ref|YP_003556824.1| integration host factor subunit beta [Shewanella violacea DSS12] gi|293327315|dbj|BAJ02046.1| integration host factor, beta subunit [Shewanella violacea DSS12] Length = 95 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLASRQSQLSAKEVESAIKEMLEQMAQTLESGDRIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++D + V FK L++R+ Sbjct: 61 GRNPKTGTSVQLDGKYVPHFKPGKELRERV 90 >gi|119471944|ref|ZP_01614229.1| putative integration host factor (iHF), beta subunit, site-specific recombination [Alteromonadales bacterium TW-7] gi|119445202|gb|EAW26493.1| putative integration host factor (iHF), beta subunit, site-specific recombination [Alteromonadales bacterium TW-7] Length = 95 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++++++ + KD V + ++ S + I+I F +F + + R Sbjct: 1 MTKSELIETLAEQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGDTVELDGKHVPHFKPGKELRDRVNASIA 95 >gi|256112658|ref|ZP_05453579.1| integration host factor subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265994098|ref|ZP_06106655.1| integration host factor subunit beta [Brucella melitensis bv. 3 str. Ether] gi|262765079|gb|EEZ11000.1| integration host factor subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 94 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I+ + L ++D V +F+EI ++ G +++ F F VK + +R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPTRS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + V ++ + V FK L+ R+ + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGAV 94 >gi|238753504|ref|ZP_04614867.1| Integration host factor subunit beta [Yersinia ruckeri ATCC 29473] gi|238708457|gb|EEQ00812.1| Integration host factor subunit beta [Yersinia ruckeri ATCC 29473] Length = 94 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|162456892|ref|YP_001619259.1| integration host factor alpha-subunit [Sorangium cellulosum 'So ce 56'] gi|161167474|emb|CAN98779.1| integration host factor alpha-subunit [Sorangium cellulosum 'So ce 56'] Length = 101 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++V+++ G S+K+S V +F + ++ RGE IKIS F F ++ K R Sbjct: 1 MTKAEIVQAVYSRLGGFSKKESADLVDLVFETMKETLGRGEKIKISGFGNFVLRDKRQRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + I RRV+ FKAS ILK+ + Sbjct: 61 GRNPQTGDPILITERRVLNFKASQILKQALN 91 >gi|220907896|ref|YP_002483207.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7425] gi|219864507|gb|ACL44846.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7425] Length = 95 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ + +KD+ +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAQKANVKKKDADAVLTAALETIMETVSSGDKVTLVGFGSFEPRERQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+++ I RV F A + K+++ Sbjct: 61 RNPKTNEKMVIPATRVPAFSAGKLFKEKVA 90 >gi|78064724|ref|YP_367493.1| histone-like DNA-binding protein [Burkholderia sp. 383] gi|107021567|ref|YP_619894.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054] gi|115350111|ref|YP_771950.1| histone family protein DNA-binding protein [Burkholderia ambifaria AMMD] gi|116688089|ref|YP_833712.1| histone family protein DNA-binding protein [Burkholderia cenocepacia HI2424] gi|134294197|ref|YP_001117932.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] gi|161523246|ref|YP_001578258.1| histone family protein DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|167584991|ref|ZP_02377379.1| DNA-binding protein HU-alpha [Burkholderia ubonensis Bu] gi|170699034|ref|ZP_02890091.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|170731439|ref|YP_001763386.1| histone family protein DNA-binding protein [Burkholderia cenocepacia MC0-3] gi|171318830|ref|ZP_02907967.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] gi|172059131|ref|YP_001806783.1| histone family protein DNA-binding protein [Burkholderia ambifaria MC40-6] gi|189348897|ref|YP_001944525.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616] gi|206561866|ref|YP_002232631.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315] gi|221202221|ref|ZP_03575256.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M] gi|221208718|ref|ZP_03581717.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2] gi|221214332|ref|ZP_03587304.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1] gi|238025719|ref|YP_002909950.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1] gi|254246661|ref|ZP_04939982.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184] gi|254251009|ref|ZP_04944327.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158] gi|330815006|ref|YP_004358711.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3] gi|77965469|gb|ABB06849.1| Histone-like DNA-binding protein [Burkholderia sp. 383] gi|105891756|gb|ABF74921.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054] gi|115280099|gb|ABI85616.1| histone family protein DNA-binding protein [Burkholderia ambifaria AMMD] gi|116646178|gb|ABK06819.1| histone family protein DNA-binding protein [Burkholderia cenocepacia HI2424] gi|124871437|gb|EAY63153.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184] gi|124893618|gb|EAY67498.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158] gi|134137354|gb|ABO53097.1| histone family protein DNA-binding protein [Burkholderia vietnamiensis G4] gi|160340675|gb|ABX13761.1| histone family protein DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|169814681|gb|ACA89264.1| histone family protein DNA-binding protein [Burkholderia cenocepacia MC0-3] gi|170136070|gb|EDT04341.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|171095971|gb|EDT40904.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] gi|171991648|gb|ACB62567.1| histone family protein DNA-binding protein [Burkholderia ambifaria MC40-6] gi|189332919|dbj|BAG41989.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616] gi|198037908|emb|CAR53853.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315] gi|221165987|gb|EED98461.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1] gi|221171350|gb|EEE03798.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2] gi|221178015|gb|EEE10427.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M] gi|237874913|gb|ACR27246.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1] gi|325521652|gb|EGD00422.1| DNA-binding protein HU-alpha [Burkholderia sp. TJI49] gi|327367399|gb|AEA58755.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3] Length = 92 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+A+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >gi|284048950|ref|YP_003399289.1| histone family protein DNA-binding protein [Acidaminococcus fermentans DSM 20731] gi|283953171|gb|ADB47974.1| histone family protein DNA-binding protein [Acidaminococcus fermentans DSM 20731] Length = 91 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++ + L +KD+ + V + + ++ + +++ F TF + + +R G Sbjct: 1 MNKSELIAEVASKTALPKKDAEKAVNAFIDTVKEAVANKDKVQLIGFGTFEARVRNARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T + ++I V FKA K + Sbjct: 61 KNPRTGETIEIAEANVPAFKAGKAFKDAVNK 91 >gi|167461596|ref|ZP_02326685.1| DNA-binding protein HU [Paenibacillus larvae subsp. larvae BRL-230010] Length = 114 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ ++K G S+K++ + VT + + I ++ +G+ +++ F F V+ + +R+G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +EV++ +V VF A LKK + Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKALN 112 >gi|91775765|ref|YP_545521.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT] gi|91709752|gb|ABE49680.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT] Length = 91 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 46/89 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +S+L++ I+K GLS+ + R + I S +GE + + F TF+V ++ +R GR Sbjct: 3 NKSELIEQIAKSAGLSKAAAGRALDATTAAITKSLKKGELVTLIGFGTFYVGKRAARNGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +KI F+A LK + Sbjct: 63 NPRTGATIKIKAANSPKFRAGKALKDAVN 91 >gi|260437765|ref|ZP_05791581.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876] gi|292809787|gb|EFF68992.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876] Length = 90 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +I+++ +S+KD+ + + + + +GE I++ F TF V ++ +R G Sbjct: 1 MNKTELASAIAEKAEISKKDAEKALKAFTEVVAEELKKGEKIQLVGFGTFEVGERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + +KI + FKA LK + Sbjct: 61 INPRTRETIKIAAAKTPKFKAGKQLKDSLN 90 >gi|317047559|ref|YP_004115207.1| integration host factor subunit beta [Pantoea sp. At-9b] gi|316949176|gb|ADU68651.1| integration host factor, beta subunit [Pantoea sp. At-9b] Length = 94 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91 >gi|322419661|ref|YP_004198884.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320126048|gb|ADW13608.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 91 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ + LS K + V +F + ++ + G+ I+I F +F VK+ + G Sbjct: 1 MNKSELIESLAAKKALSFKKAEEVVNAVFASMTEALLSGDRIEIRGFGSFVVKEYDAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKVSG 91 >gi|251789938|ref|YP_003004659.1| integration host factor subunit beta [Dickeya zeae Ech1591] gi|247538559|gb|ACT07180.1| integration host factor, beta subunit [Dickeya zeae Ech1591] Length = 94 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQHSHIPAKVVEDAVKEMLEQMATTLASGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V+++ + V FK L+ R Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91 >gi|119488961|ref|ZP_01621896.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] gi|119454917|gb|EAW36060.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] Length = 98 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ + + G+++K + V+ + I D+ GE + + F +F + + +R G Sbjct: 1 MNKEQLVQETAFKAGVTKKQADAIVSAICESIMDAVAEGEKVTLVGFGSFEARHRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T Q + I V F A K+ + ++ Sbjct: 61 RNPSTGQPMTIPETTVPAFSAGKAFKEMVAEE 92 >gi|317486543|ref|ZP_07945366.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316922218|gb|EFV43481.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 91 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV I + GL ++ + +F+ + + ++ GE + + F +F V ++ R Sbjct: 1 MTKADLVDKIHAKAGLGTKAATEQFLDAAISVLSETIANGEQVSFTGFGSFKVVERSERK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E I RVV F LK+ + Sbjct: 61 GRNPRTGEECLIPASRVVKFTPGKALKEAVK 91 >gi|329298227|ref|ZP_08255563.1| integration host factor subunit beta [Plautia stali symbiont] Length = 94 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|42522297|ref|NP_967677.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100] gi|39574828|emb|CAE78670.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100] Length = 97 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 56/96 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ IS++ G++R + V T+F+ + ++ +R + I+I F +F +Q G+ G Sbjct: 1 MTKADLINLISEKAGITRVKAETVVNTIFDSMVEALMRDDRIEIRGFGSFVNRQYGAYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN +T + + +D +++ FK LK+ I + Sbjct: 61 RNPRTGEIINVDEKKLPFFKVGKELKEDINGGPEEK 96 >gi|83311178|ref|YP_421442.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82946019|dbj|BAE50883.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 92 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F TF V + +R G Sbjct: 1 MNKSELINAVADSAKMTKADAGNAIDAVFAAITTAMKSGDDVRLVGFGTFSVSARPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKTLTIAASKSAKFTAGKSLKDTING 91 >gi|307244028|ref|ZP_07526147.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678] gi|306492552|gb|EFM64586.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678] Length = 93 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +S++ L++K+S + + ++ V G+ +++ F TF +++ +R G Sbjct: 1 MNKAELVAKMSEKSNLTKKESELALNAFMKVVEETLVAGDKVQLVGFGTFETRERAARSG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I + VFKA LK+ + + Sbjct: 61 RNPRKPEEVIEIPASKAPVFKAGKGLKELVNN 92 >gi|124290|sp|P23303|IHFB_SERMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|152829|gb|AAA26557.1| integration host factor beta-subunit [Serratia marcescens] Length = 94 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91 >gi|298489847|ref|YP_003720024.1| histone family protein DNA-binding protein ['Nostoc azollae' 0708] gi|298231765|gb|ADI62901.1| histone family protein DNA-binding protein ['Nostoc azollae' 0708] Length = 94 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + ++ I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLSAAIETIIEAVASGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN++++I +V F A + ++R+ Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFRERVA 90 >gi|218885662|ref|YP_002434983.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756616|gb|ACL07515.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 91 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++S+E + +++ V T + + ++ G+ ++I F +F VK G G Sbjct: 1 MNKSELIKTLSEETNIPIEEAAMVVNTFVDNMKEALADGDRVEIRGFGSFKVKDYGGYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V + P+R+ F+A LK+ + D Sbjct: 61 RNPKTGDMVVVQPKRLPFFRAGKELKEFLND 91 >gi|189465271|ref|ZP_03014056.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM 17393] gi|189437545|gb|EDV06530.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM 17393] Length = 90 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GL++ DS + + I + G+ + + F TF V ++ +R+G Sbjct: 1 MNKSELISAMAAESGLTKADSKKALDAFMASITKALKAGDKVSLVGFGTFAVSERAARLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T Q + I ++V FK L Sbjct: 61 INPSTKQSITIPAKKVAKFKPGMEL 85 >gi|49073590|gb|AAT49331.1| PA3161 [synthetic construct] Length = 95 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I G LS KD + T+ ++ + G+ I+I F + + + RV Sbjct: 1 MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSVSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V++D + V FK L+ R+ + Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92 >gi|289628106|ref|ZP_06461060.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651294|ref|ZP_06482637.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330870971|gb|EGH05680.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 92 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +N QT + VKI V FK LK + + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVNNS 92 >gi|220905203|ref|YP_002480515.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869502|gb|ACL49837.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 91 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K+++ E + D++ V T F+ + S + GE I+I F +F +K+ G Sbjct: 1 MNKSELIKALADETNIPFDDASMVVNTFFDAMKQSLLAGERIEIRGFGSFKIKEYEGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V + +R+ F+A LK+ I Sbjct: 61 RNPKTGESVTVASKRLPFFRAGKELKEFINQ 91 >gi|323436199|ref|ZP_01051348.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134] gi|321496514|gb|EAQ37896.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134] Length = 90 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ G+++ + + + + ++ + +G + + F ++ V ++ +R G Sbjct: 1 MNKSELIDGMAEHAGITKAAAKKALESFLGDVEGTLKKGGRVSLVGFGSWSVSKRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSELASSVN 90 >gi|294012141|ref|YP_003545601.1| integration host factor beta subunit [Sphingobium japonicum UT26S] gi|292675471|dbj|BAI96989.1| integration host factor beta subunit [Sphingobium japonicum UT26S] Length = 96 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++E L+ ++ R V F EI D G +++ F F + + +R Sbjct: 1 MIRSELIQKLAEENPNLNLQEVERIVDLFFKEIVDRLSSGGRVELRGFGAFTTRAREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V +D +RV FK +++R+ Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERLN 91 >gi|284052866|ref|ZP_06383076.1| histone family protein DNA-binding protein [Arthrospira platensis str. Paraca] gi|291569732|dbj|BAI92004.1| DNA-binding protein HU [Arthrospira platensis NIES-39] Length = 92 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++++ G+++K + ++ + D+ E + + F +F +++ +R G Sbjct: 1 MNKGELIDAVAEKAGVTKKQADAVLSAALESVIDAVATQEKVTLVGFGSFEARKRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +++ I V F A + K+++ Sbjct: 61 RNPQTGEKMDIPETWVPAFSAGKMFKEKVA 90 >gi|188534268|ref|YP_001908065.1| integration host factor subunit beta [Erwinia tasmaniensis Et1/99] gi|226709794|sp|B2VC76|IHFB_ERWT9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|188029310|emb|CAO97187.1| Integration host factor beta-subunit (IHF-beta) [Erwinia tasmaniensis Et1/99] Length = 95 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|254467848|ref|ZP_05081254.1| integration host factor, beta subunit [beta proteobacterium KB13] gi|207086658|gb|EDZ63941.1| integration host factor, beta subunit [beta proteobacterium KB13] Length = 92 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ +S +F L +KD+ V + + + + G+ I+I F +F + ++ +R+ Sbjct: 1 MTRSELIEKLSSQFQHLLQKDAELVVKNILDSMSSTLNNGKRIEIRGFGSFSLNKRPARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T ++V I + V FKA L+ R+ Sbjct: 61 GRNPKTGEKVHISEKLVPHFKAGKELRSRVDK 92 >gi|56477449|ref|YP_159038.1| DNA-binding protein HU-alpha [Aromatoleum aromaticum EbN1] gi|56313492|emb|CAI08137.1| DNA-binding protein hu-alpha [Aromatoleum aromaticum EbN1] Length = 92 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V++++ +SR + R ++T+ + I + GE + + F +F V ++ R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +KI RV F A + LK I Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAIN 90 >gi|296159961|ref|ZP_06842781.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1] gi|295889707|gb|EFG69505.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1] Length = 107 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V + + V FK L++R+ D G ++ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEEP 103 >gi|294507387|ref|YP_003571445.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8] gi|294343715|emb|CBH24493.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8] Length = 100 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 50/98 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL+ I+ GL++ ++ V + + G I++ F F V+ + R Sbjct: 2 SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN QTN+ V+I+ R VF+ S L + + + + Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVNAAHKADE 99 >gi|317051488|ref|YP_004112604.1| histone family protein DNA-binding protein [Desulfurispirillum indicum S5] gi|316946572|gb|ADU66048.1| histone family protein DNA-binding protein [Desulfurispirillum indicum S5] Length = 91 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ +++ G+++ + + + + + + GE + + F TF V ++ R G Sbjct: 1 MTKKELIGKMAEASGITKVQAEKALNAFIDSVSSTLKSGEKVTLVGFGTFQVSERAKRQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + I R+ F LK+ + Sbjct: 61 INPRTKTPITIPARKSPKFVPGKALKELVDK 91 >gi|291616907|ref|YP_003519649.1| IhfB [Pantoea ananatis LMG 20103] gi|304397072|ref|ZP_07378951.1| integration host factor, beta subunit [Pantoea sp. aB] gi|308186258|ref|YP_003930389.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|291151937|gb|ADD76521.1| IhfB [Pantoea ananatis LMG 20103] gi|304355221|gb|EFM19589.1| integration host factor, beta subunit [Pantoea sp. aB] gi|308056768|gb|ADO08940.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans C9-1] gi|327393335|dbj|BAK10757.1| integration host factor beta- subunit IhfB [Pantoea ananatis AJ13355] Length = 94 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V ++ + V FK L+ R Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91 >gi|189424909|ref|YP_001952086.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421168|gb|ACD95566.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 93 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++ + + +S K + V +FN + ++ GE I+I +F VK+ G+ G Sbjct: 1 MNKSELIETFALQREISHKRAEEVVNMIFNSMSEAMTAGERIEIRGLGSFVVKEYGAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + +++ P+++ FK LK+RI+D Sbjct: 61 RNPKTGEPIEVKPKKLPFFKVGKELKERILDG 92 >gi|238898611|ref|YP_002924292.1| HU, DNA-binding transcriptional regulator, alpha subunit -3 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466370|gb|ACQ68144.1| HU, DNA-binding transcriptional regulator, alpha subunit -3 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 114 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I++ G+++ + + + + I +S + E++++ F TF+VK + +R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + +++ V + LK + Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALKGS 92 >gi|256830230|ref|YP_003158958.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256579406|gb|ACU90542.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 90 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ GL++ ++ R +T + ++ V + + ++ F TF V+++ +R G Sbjct: 1 MTKAELVAKMAEKAGLTKANAERALTEFLKAVQETLVTEKKMTLTGFGTFVVEERQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+KI +VV F+ LK I Sbjct: 61 RNPRTGEELKIPACKVVKFRPGKELKDAIK 90 >gi|302669370|ref|YP_003832520.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302397034|gb|ADL35938.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 94 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+KE GLS+KDS + V + + +++ F TF ++ +R G Sbjct: 1 MNKTELVDAIAKETGLSKKDSEKAVKAFTEAVSKELKKKGKVQLVGFGTFETAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +N QT +KI V FKA LK + + Sbjct: 61 KNPQTGAAIKIPAATVPKFKAGKALKDAVNGKKK 94 >gi|282896625|ref|ZP_06304640.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii D9] gi|281198495|gb|EFA73381.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii D9] Length = 94 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++S++ +++K + ++ + I ++ G+ + + F +F + + +R G Sbjct: 1 MNKAELVDAVSEKASVTKKQADAVISAAIDTIIEAVASGDKVTLVGFGSFESRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN++++I +V F A + ++++ Sbjct: 61 RNPKTNEKMEIPATKVPAFSAGKLFREKVA 90 >gi|206895738|ref|YP_002246738.1| DNA-binding protein HU [Coprothermobacter proteolyticus DSM 5265] gi|206738355|gb|ACI17433.1| DNA-binding protein HU [Coprothermobacter proteolyticus DSM 5265] Length = 87 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 49/87 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +LV ++++ G+ +KD+ F+ + + ++ GE + + F F ++++ +R G Sbjct: 1 MTKPELVDALAERTGMKKKDAELFLNAFMDVVTETVKSGEPVVLVGFGKFMLRERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 N +T + + I ++ VVFK L+ Sbjct: 61 VNPKTREPIDIPAKKTVVFKPGKELRD 87 >gi|300716083|ref|YP_003740886.1| Integration host factor beta-subunit (IHF-beta) [Erwinia billingiae Eb661] gi|299061919|emb|CAX59035.1| Integration host factor beta-subunit (IHF-beta) [Erwinia billingiae Eb661] Length = 94 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + +GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQHSHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|298368833|ref|ZP_06980151.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] gi|298282836|gb|EFI24323.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str. F0314] Length = 89 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I++E G+S+ + + + N + ++ G+ + + F TF+V ++ R G Sbjct: 1 MNKSELIEAIAQEAGISKAAAAKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + I + F+A LK + Sbjct: 61 RNPKTGAPLTIAAAKTPKFRAGKALKDAL 89 >gi|317133959|ref|YP_004089870.1| histone family protein DNA-binding protein [Ruminococcus albus 7] gi|315450421|gb|ADU23984.1| histone family protein DNA-binding protein [Ruminococcus albus 7] Length = 96 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 53/96 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ G ++K++ + +TT+ + I + GE + + F TF V+++ ++V Sbjct: 1 MNKAELINVIAEKGGYTKKEADKVLTTVLDTIAGALENGEKVTLVGFGTFEVRERAAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 N T V + R+V FKA LK+ + + Sbjct: 61 LNPVTKAPVDVPARKVPAFKAGQALKEAVAKAKNKK 96 >gi|87303118|ref|ZP_01085916.1| DNA binding protein HU [Synechococcus sp. WH 5701] gi|87282285|gb|EAQ74245.1| DNA binding protein HU [Synechococcus sp. WH 5701] Length = 91 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ L++ + ++ V I DS V G+ + I F +F +++ +R G Sbjct: 1 MNKADLVNLVAVRTELTKTEVSKVVDAAIETIVDSVVEGKKVSILGFGSFEARERSARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +++KI +RV F A K ++ Sbjct: 61 LNPKTGEKIKIPAKRVPAFTAGKQFKDKVQ 90 >gi|209965676|ref|YP_002298591.1| DNA-binding protein HupB [Rhodospirillum centenum SW] gi|209959142|gb|ACI99778.1| DNA-binding protein HupB [Rhodospirillum centenum SW] Length = 91 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL +++++ G S+ + + V +F+ I + +GE ++++ F TF V ++ +R G Sbjct: 1 MQKADLAEAVAQATGASKAAAAKTVDAIFDAIQQALAKGEDVRLTGFGTFSVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I + F A LK + Sbjct: 61 RNPQTGATIQIAASKQPKFTAGKALKDAVNG 91 >gi|329902901|ref|ZP_08273299.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480] gi|327548565|gb|EGF33226.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480] Length = 91 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + L + + R + ++ + + + V G+++++ F F + R G Sbjct: 1 MNKTELIDAIAADCDLPKTVAQRALESILSNVIQAVVNGDSVQLIGFGAFASGSRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+KI + V F A K + Sbjct: 61 RNPRTGEEIKIAAAKTVKFSAGKAFKDAVNK 91 >gi|120598786|ref|YP_963360.1| integration host factor subunit beta [Shewanella sp. W3-18-1] gi|146293137|ref|YP_001183561.1| integration host factor subunit beta [Shewanella putrefaciens CN-32] gi|166975891|sp|A4Y729|IHFB_SHEPC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975893|sp|A1RJG1|IHFB_SHESW RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|120558879|gb|ABM24806.1| integration host factor, beta subunit [Shewanella sp. W3-18-1] gi|145564827|gb|ABP75762.1| integration host factor, beta subunit [Shewanella putrefaciens CN-32] gi|319426351|gb|ADV54425.1| integration host factor, beta subunit [Shewanella putrefaciens 200] Length = 95 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK L++R+ Sbjct: 61 GRNPKTGSSVELEGKYVPHFKPGKELRERV 90 >gi|288817831|ref|YP_003432178.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus TK-6] gi|288787230|dbj|BAI68977.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus TK-6] gi|308751429|gb|ADO44912.1| histone family protein DNA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 90 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++K G+++K + + + + I S +GE + I F F V+++ +R G Sbjct: 1 MTKAELVSAVAKGAGITKKQADAALKSAISAIAGSLKKGERVAIPGFGIFTVRKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I R+VV F+ + L++ I Sbjct: 61 RNPRTGAVINIPARKVVTFRPAKDLRESIK 90 >gi|213968551|ref|ZP_03396694.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|301383523|ref|ZP_07231941.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato Max13] gi|302062573|ref|ZP_07254114.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato K40] gi|302130240|ref|ZP_07256230.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926839|gb|EEB60391.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|330967966|gb|EGH68226.1| DNA-binding protein HU family [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017834|gb|EGH97890.1| DNA-binding protein HU family [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 91 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90 >gi|170693720|ref|ZP_02884878.1| integration host factor, beta subunit [Burkholderia graminis C4D1M] gi|209519345|ref|ZP_03268144.1| integration host factor, beta subunit [Burkholderia sp. H160] gi|295677276|ref|YP_003605800.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002] gi|307730619|ref|YP_003907843.1| integration host factor subunit beta [Burkholderia sp. CCGE1003] gi|323526953|ref|YP_004229106.1| integration host factor subunit beta [Burkholderia sp. CCGE1001] gi|170141502|gb|EDT09672.1| integration host factor, beta subunit [Burkholderia graminis C4D1M] gi|209500229|gb|EEA00286.1| integration host factor, beta subunit [Burkholderia sp. H160] gi|295437119|gb|ADG16289.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002] gi|307585154|gb|ADN58552.1| integration host factor, beta subunit [Burkholderia sp. CCGE1003] gi|323383955|gb|ADX56046.1| integration host factor, beta subunit [Burkholderia sp. CCGE1001] Length = 107 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV ++ F L KD+ V T+ + + ++ +G I+I F +F + ++ SRV Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALAKGHRIEIRGFGSFGLNRRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN ++ ++V + + V FK L++R+ D G ++ Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERV-DRRAGEPLKAEEP 103 >gi|10955165|ref|NP_059821.1| hypothetical protein pTi_149 [Agrobacterium tumefaciens] gi|61226436|sp|P0A3I1|IHFB_AGRTU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|61226439|sp|P0A3I2|IHFB_AGRT9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|2773264|gb|AAC72021.1| ysa [Agrobacterium tumefaciens] gi|11124690|emb|CAC15177.1| IHF beta subunit-like protein [Agrobacterium tumefaciens] Length = 102 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV ++ + L R+D+ V + +EI + RGE + I SF TF V+ + +R Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN V I+ + V F+A ++ R+ + Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTAEK 95 >gi|50121514|ref|YP_050681.1| integration host factor subunit beta [Pectobacterium atrosepticum SCRI1043] gi|227111987|ref|ZP_03825643.1| integration host factor subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328154|ref|ZP_03832178.1| integration host factor subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253688123|ref|YP_003017313.1| integration host factor, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261821284|ref|YP_003259390.1| integration host factor subunit beta [Pectobacterium wasabiae WPP163] gi|81693226|sp|Q6D404|IHFB_ERWCT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|259492036|sp|C6DF68|IHFB_PECCP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|49612040|emb|CAG75489.1| integration host factor beta-subunit [Pectobacterium atrosepticum SCRI1043] gi|251754701|gb|ACT12777.1| integration host factor, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261605297|gb|ACX87783.1| integration host factor, beta subunit [Pectobacterium wasabiae WPP163] Length = 94 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + ++ + G+ I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMASTLAEGDRIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|295105343|emb|CBL02887.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii SL3/3] Length = 89 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + + V+ +F + + GE I IS F TF V+++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 N +T + + I R +VFK LK Sbjct: 61 INPRTREPITIAASRSIVFKPGKSLKD 87 >gi|255011460|ref|ZP_05283586.1| putative histone-like DNA-binding protein HU3 [Bacteroides fragilis 3_1_12] gi|313149278|ref|ZP_07811471.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12] gi|313138045|gb|EFR55405.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12] Length = 90 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + F+ + + G+ I + F TF V ++ R G Sbjct: 1 MNKAELINAMAAESGLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERAERSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + + I ++V FK + L I Sbjct: 61 INPSTKKAIIIPAKKVAKFKPGAELADAIK 90 >gi|293396770|ref|ZP_06641046.1| integration host factor subunit beta [Serratia odorifera DSM 4582] gi|291421034|gb|EFE94287.1| integration host factor subunit beta [Serratia odorifera DSM 4582] Length = 94 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V +D + V FK L+ R Sbjct: 61 GRNPKTGDKVDLDGKYVPHFKPGKELRDRAN 91 >gi|323526327|ref|YP_004228480.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|323383329|gb|ADX55420.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 94 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + I ++ V+G+ +++ F +F + +R G Sbjct: 1 MNKQELIDAVASATGSSKSIAGEAIDAVIGAITEAVVKGDTVQLIGFGSFSQGTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T +E+ I + V F A K + R Sbjct: 61 RNPATGEEISIAAAKTVKFTAGKGFKDAVNGGAR 94 >gi|254412658|ref|ZP_05026431.1| DNA-binding protein HU [Microcoleus chthonoplastes PCC 7420] gi|196180393|gb|EDX75384.1| DNA-binding protein HU [Microcoleus chthonoplastes PCC 7420] Length = 94 Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 2 MNKGELVDKVAEKAAVTKKQADAVLTAALESIMEAVSEGDKVTLVGFGSFESRERKAREG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++I +V F A + K+++ Sbjct: 62 RNPKTGDKMEIPATKVPAFSAGKLFKEQVA 91 >gi|319954832|ref|YP_004166099.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] gi|319423492|gb|ADV50601.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] Length = 90 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVSKREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +KI + VV FKA + L K + Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELAKAVN 90 >gi|32491258|ref|NP_871512.1| hypothetical protein WGLp509 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166465|dbj|BAC24655.1| hupA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 90 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + + I +S G A+++ F TF + ++ +R G Sbjct: 1 MNKTQLIDVIANKAELSKIKARAALESTLDAITNSLKEGNAVQLIGFGTFKINRRNARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI V F + LK + Sbjct: 61 RNPQTGKEIKIAATNVPTFVSGKALKAAVK 90 >gi|186477811|ref|YP_001859281.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184194270|gb|ACC72235.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 92 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I + +G+A+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKAVAKGDAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >gi|322832233|ref|YP_004212260.1| integration host factor, subunit beta [Rahnella sp. Y9602] gi|321167434|gb|ADW73133.1| integration host factor, beta subunit [Rahnella sp. Y9602] Length = 94 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQHSHIPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91 >gi|34811460|pdb|1OUZ|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With A Variant H' Site (T44a) gi|34811465|pdb|1OWF|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed With The Native H' Site Length = 94 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + +GE I I F +F + + R Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|127512883|ref|YP_001094080.1| integration host factor, beta subunit [Shewanella loihica PV-4] gi|166975890|sp|A3QEC3|IHFB_SHELP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|126638178|gb|ABO23821.1| integration host factor, beta subunit [Shewanella loihica PV-4] Length = 95 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK L++R+ Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERV 90 >gi|197119620|ref|YP_002140047.1| integration host factor subunit beta [Geobacter bemidjiensis Bem] gi|253699630|ref|YP_003020819.1| histone family protein DNA-binding protein [Geobacter sp. M21] gi|197088980|gb|ACH40251.1| integration host factor, beta subunit [Geobacter bemidjiensis Bem] gi|251774480|gb|ACT17061.1| histone family protein DNA-binding protein [Geobacter sp. M21] Length = 93 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + G L+RKDS V+ +F+ + ++ G+ ++I F +F ++ + R Sbjct: 1 MTKSELIDKLVEVRGVLTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + V I ++ FK L++R+ + Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERVNN 92 >gi|17231427|ref|NP_487975.1| DNA binding protein HU [Nostoc sp. PCC 7120] gi|75907988|ref|YP_322284.1| nucleoid protein Hbs [Anabaena variabilis ATCC 29413] gi|186685101|ref|YP_001868297.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] gi|2506517|sp|P05514|DBH_ANASP RecName: Full=DNA-binding protein HU gi|31615985|pdb|1P51|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615986|pdb|1P51|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615987|pdb|1P51|C Chain C, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615988|pdb|1P51|D Chain D, Anabaena Hu-Dna Cocrystal Structure (Ahu6) gi|31615997|pdb|1P71|A Chain A, Anabaena Hu-Dna Corcrystal Structure (Tr3) gi|31615998|pdb|1P71|B Chain B, Anabaena Hu-Dna Corcrystal Structure (Tr3) gi|31616001|pdb|1P78|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu2) gi|31616002|pdb|1P78|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu2) gi|1408581|gb|AAB06445.1|AAB06445 HU protein [Nostoc sp. PCC 7120] gi|998920|gb|AAB34352.1| HU [Anabaena] gi|17133069|dbj|BAB75634.1| DNA binding protein HU [Nostoc sp. PCC 7120] gi|75701713|gb|ABA21389.1| bacterial nucleoid protein Hbs [Anabaena variabilis ATCC 29413] gi|186467553|gb|ACC83354.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] Length = 94 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKVA 90 >gi|120556663|ref|YP_961014.1| histone family protein DNA-binding protein [Marinobacter aquaeolei VT8] gi|120326512|gb|ABM20827.1| histone family protein DNA-binding protein [Marinobacter aquaeolei VT8] Length = 90 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+ + GL+R+ + + +++ +A RGE + + F TF+++ + +R G Sbjct: 1 MRKPELAAAIADKTGLTREKAGEVINAFTDQVSAAAARGEDVTLIGFGTFNIRSREARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I + V FKA LK I Sbjct: 61 RNPQTGASIQIPASKTVGFKAGKALKDAI 89 >gi|258592137|emb|CBE68442.1| DNA-binding protein HU (DNA-binding protein II) (HB) [NC10 bacterium 'Dutch sediment'] Length = 93 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ +++ GL++K + V + + ++ +GE I++ F +F VK K +R G Sbjct: 1 MTKADIASIVAER-GLAKKQAMEAVEATLDIVKNALKKGEKIQLVGFGSFQVKAKRARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + I R+V+ FK L + + Sbjct: 60 RNPQTGDPITISARKVLKFKPGKALHLAVNN 90 >gi|284928746|ref|YP_003421268.1| nucleoid DNA-binding protein [cyanobacterium UCYN-A] gi|284809205|gb|ADB94910.1| bacterial nucleoid DNA-binding protein [cyanobacterium UCYN-A] Length = 93 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +I+ + L++K++++ + L + I ++ G + + F TF + + R G Sbjct: 1 MNKEDLVNTIAAKTRLTKKETSQILDALTSTIMETVASGNKVVLVGFGTFEPRDRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N QT Q + I V F A + K ++++ M Sbjct: 61 MNPQTGQPITIPATTVPAFSAGKVFKGKVVESM 93 >gi|163788099|ref|ZP_02182545.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Flavobacteriales bacterium ALC-1] gi|159876419|gb|EDP70477.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Flavobacteriales bacterium ALC-1] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ G+++ + + + +L +I S +G + + F ++ V ++ +R G Sbjct: 1 MNKTDLINGMAENAGITKAAAKKALDSLLVDIEGSLQKGNRVSLVGFGSWSVSRRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L + Sbjct: 61 RNPQTGKTIKIKAKNVVKFKAGSDLSSAVN 90 >gi|328949956|ref|YP_004367291.1| histone family protein DNA-binding protein [Marinithermus hydrothermalis DSM 14884] gi|328450280|gb|AEB11181.1| histone family protein DNA-binding protein [Marinithermus hydrothermalis DSM 14884] Length = 97 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL +KD V +E+ D R ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVNHVAETTGLKKKDVKAVVDAFLSEVADMLDRDYKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G T +++KI + FK LK+++ Sbjct: 65 TGVKPGTTEKIKIPASKYPAFKPGKALKEKVK 96 >gi|320353405|ref|YP_004194744.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320121907|gb|ADW17453.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 94 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++KE LS+ + + V ++F+ I ++ G+ + ++ F TF + +R G Sbjct: 1 MNKTELIDKVAKESALSKSAAEQVVNSVFSAIAEAMKTGDKVTLAGFGTFSTADRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN Q+ +++ I ++ V FK S L I Sbjct: 61 RNPQSGEKIAIPAKKAVKFKPGSKLVDVIQ 90 >gi|158340425|ref|YP_001521781.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158310666|gb|ABW32280.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I++ G+++K + ++ I D+ GE + + F +F + + +R G Sbjct: 1 MNKGELVDAIAENTGVTKKQADTTLSATIETIVDAVSSGEKVTLVGFGSFEARDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++ + VF A + K+++ Sbjct: 61 RNPKTGEKMTTPASKAPVFSAGKLFKEKVK 90 >gi|225011859|ref|ZP_03702297.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] gi|225004362|gb|EEG42334.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+S+ + + + + + + +G + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGISKAAAKKALESFLGSVGGTLKKGGRVSLVGFGSWSVSKRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +KI + VV FKA + L + Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELSGSVN 90 >gi|167855104|ref|ZP_02477876.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755] gi|219870700|ref|YP_002475075.1| integration host factor subunit beta [Haemophilus parasuis SH0165] gi|254803535|sp|B8F475|IHFB_HAEPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|167853739|gb|EDS24981.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755] gi|219690904|gb|ACL32127.1| integration host factor, beta subunit/bacterial nucleoid DNA-binding protein [Haemophilus parasuis SH0165] Length = 93 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ ++ LS K V + +I S +GE I++ F +F + + RV Sbjct: 1 MTKSELIANLVAQYPSLSVKSVDESVKEILEQIMGSLEQGERIEVRGFGSFSLHYRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKELKERV 90 >gi|154246162|ref|YP_001417120.1| integration host factor subunit beta [Xanthobacter autotrophicus Py2] gi|226709820|sp|A7IHH0|IHFB_XANP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|154160247|gb|ABS67463.1| integration host factor, beta subunit [Xanthobacter autotrophicus Py2] Length = 94 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D V + ++ + RG+ +++ F F VK++ +RV Sbjct: 1 MIKSELVQKIAEANPHLYQRDVENIVNAILEQVASALERGDRVELRGFGAFSVKKRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V + + V FK +++R+ Sbjct: 61 GRNPRTGKQVDVSEKTVPYFKTGKEMRERLN 91 >gi|325578218|ref|ZP_08148353.1| integration host factor beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|301156124|emb|CBW15595.1| integration host factor (IHF), DNA-binding protein, beta subunit [Haemophilus parainfluenzae T3T1] gi|325159954|gb|EGC72083.1| integration host factor beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 94 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++++S + LS K+ V + I S G I++ F +F + + RV Sbjct: 1 MTKSELIENLSTKHPTLSAKEVEGIVKDILELIAQSLEEGNRIEVRGFGSFSLHHRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T VK+D + V FKA LK R+ Sbjct: 61 GRNPKTGDSVKLDAKSVPHFKAGKELKDRVN 91 >gi|309787032|ref|ZP_07681644.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617] gi|308924610|gb|EFP70105.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617] gi|332760731|gb|EGJ91019.1| DNA-binding protein HU-beta [Shigella flexneri 4343-70] gi|332768362|gb|EGJ98546.1| DNA-binding protein HU-&beta, NS1 [Shigella flexneri 2930-71] Length = 85 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 44/85 (51%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ I+ +S+ + R + + + +S G+ + + F TF VK++ +R GRN QT Sbjct: 1 MIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+ I +V F+A LK + Sbjct: 61 GKEITIAAAKVPSFRAGKALKDAVN 85 >gi|71737446|ref|YP_277186.1| HU family DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485720|ref|ZP_05639761.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298489413|ref|ZP_07007424.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557999|gb|AAZ37210.1| DNA-binding protein HU family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155987|gb|EFH97096.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321727|gb|EFW77825.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331477|gb|EFW87417.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880920|gb|EGH15069.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330890628|gb|EGH23289.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330986904|gb|EGH85007.1| HU family DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012004|gb|EGH92060.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPEVAAAIAEKADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90 >gi|310657656|ref|YP_003935377.1| hu, DNA-binding transcriptional regulator subunit beta [Clostridium sticklandii DSM 519] gi|308824434|emb|CBH20472.1| HU, DNA-binding transcriptional regulator, beta subunit [Clostridium sticklandii] Length = 102 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ G+++KD+ + + + ++ V GE +++ F TF +++ +R G Sbjct: 1 MNKAELVAKMAEKSGMTKKDTEVALNSFMASVEEALVAGEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94 RN + + ++KI + VFKA LK+++ Sbjct: 61 RNPRDPEKKIKIPASKAPVFKAGKGLKEKVN 91 >gi|291615208|ref|YP_003525365.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291585320|gb|ADE12978.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 94 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G S+ D+ R + L + + + +G+ + + F TF V+++ +R G Sbjct: 1 MNRKELIDALATKTGSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T +KI + FKA + LK + + Sbjct: 61 RNPSTGAAIKIKASKQPAFKAGATLKAAVNGGKK 94 >gi|302878113|ref|YP_003846677.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] gi|302580902|gb|ADL54913.1| histone family protein DNA-binding protein [Gallionella capsiferriformans ES-2] Length = 93 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L+ +++ + G ++ ++ R + + ++ G+ I + F TF V+++ +R G Sbjct: 1 MNRKELIDALAAKTGSTKTEAERNIAAFIEVVTETLAAGDDIALVGFGTFEVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T E+KI + FKA + LK + Sbjct: 61 RNPATGAELKIAASKQAAFKAGATLKAAVNGS 92 >gi|269792401|ref|YP_003317305.1| histone family protein DNA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100036|gb|ACZ19023.1| histone family protein DNA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 93 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 2/92 (2%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV + K +S+K ++ V +FN I ++ V+G+ +++ F TF V+++ +R Sbjct: 1 MTKADLVNELVKSVEDISKKKASEAVDAIFNIIQEALVKGDKVQLVGFGTFEVQERAARQ 60 Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILKKRIM 94 GRN Q + ++I ++ VF+A LK + Sbjct: 61 GRNPQDPTKTIEIPAKKAPVFRAGKSLKDAVN 92 >gi|224537593|ref|ZP_03678132.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus DSM 14838] gi|224520790|gb|EEF89895.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus DSM 14838] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GL++ DS + + I + G+ + + F TF V ++ +R+G Sbjct: 1 MNKSELINAMAAESGLTKTDSKKALDAFMAAITKALKAGDKVSLVGFGTFVVAERAARLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T Q + I +RV FK L Sbjct: 61 INPSTKQSITIPAKRVAKFKPGMEL 85 >gi|328912279|gb|AEB63875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Bacillus amyloliquefaciens LL3] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V +++ E G+++K++T V +F + ++ +GE+IKI TF V+++ +R G Sbjct: 1 MNKIEFVGAVANELGVTKKEATPNVEGVFKVLSETLAKGESIKIPGVGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+QT +E++I +VV FK + LK + Sbjct: 61 RNIQTGEEIEIPASKVVKFKPAKALKDAVK 90 >gi|257439404|ref|ZP_05615159.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165] gi|257198279|gb|EEU96563.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165] Length = 89 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + V F+ + + GE I IS F TF ++++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAELAVNAAFDALSKAMAEGEKITISGFGTFEIRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 N +T + + I + +VFK LK Sbjct: 61 INPRTREPITIAASKSIVFKPGKALKD 87 >gi|146297905|ref|YP_001192496.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] gi|146152323|gb|ABQ03177.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + G+++ + + + + + +G I + F ++ V + +R G Sbjct: 1 MNKSELIDAIAADAGITKAAAKLALESFLGNVGTTLKKGGRISLVGFGSWSVSARAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA + L+ + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAVN 90 >gi|253999167|ref|YP_003051230.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|313201269|ref|YP_004039927.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] gi|253985846|gb|ACT50703.1| histone family protein DNA-binding protein [Methylovorus sp. SIP3-4] gi|312440585|gb|ADQ84691.1| histone family protein DNA-binding protein [Methylovorus sp. MP688] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+K G+S+ + R + + + +G+ + + F +F+V ++ +R G Sbjct: 1 MNKSELIDEIAKAAGISKAAAGRSLDATTAAVTKALKKGDIVTLIGFGSFYVGKRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI F+A LK + Sbjct: 61 RNPRTGTTIKIKAANSPKFRAGKALKDAVN 90 >gi|258545129|ref|ZP_05705363.1| integration host factor subunit beta [Cardiobacterium hominis ATCC 15826] gi|258519648|gb|EEV88507.1| integration host factor subunit beta [Cardiobacterium hominis ATCC 15826] Length = 96 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + L +D V + ++C S +G+ ++I F +F + + +R Sbjct: 1 MTKSELIDRLCMRYPQLRSQDVEEAVKLIIEKVCQSLEKGDRVEIRGFGSFSLHYREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V++ + + F+A L++R+ + Sbjct: 61 GRNPKTGDSVEVPSKSIPYFRAGKELRERVDQN 93 >gi|224369772|ref|YP_002603936.1| IhfB [Desulfobacterium autotrophicum HRM2] gi|223692489|gb|ACN15772.1| IhfB [Desulfobacterium autotrophicum HRM2] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ + + L++ ++ V F+ + ++ E ++I +F +K+ S G Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +V I +++ FK LK+R+ Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89 >gi|149928275|ref|ZP_01916518.1| Integration host factor, beta subunit [Limnobacter sp. MED105] gi|149823004|gb|EDM82246.1| Integration host factor, beta subunit [Limnobacter sp. MED105] Length = 98 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + K F L +D+ V ++ + + + G+ I+I F +F + ++ RV Sbjct: 1 MTKSELINQLVKRFPKLPVRDTDFAVKSILDSMTQALAEGQRIEIRGFGSFSLTRRPQRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V + +RV FK L++R+ Sbjct: 61 GRNPKSGEQVVVPEKRVPHFKPGKELRERV 90 >gi|91785774|ref|YP_560980.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400] gi|170694282|ref|ZP_02885436.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|187925902|ref|YP_001897544.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|209515815|ref|ZP_03264678.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|296157574|ref|ZP_06840409.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|307731496|ref|YP_003908720.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|323527878|ref|YP_004230031.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|91689728|gb|ABE32928.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400] gi|170140705|gb|EDT08879.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|187717096|gb|ACD18320.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|209503842|gb|EEA03835.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|295892346|gb|EFG72129.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|307586031|gb|ADN59429.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|323384880|gb|ADX56971.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 92 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I S +G+A+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGDAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >gi|254480378|ref|ZP_05093625.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148] gi|214038961|gb|EEB79621.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ LS+ D+ R + + + + D+ +G+ + + F TF VK + +R G Sbjct: 1 MNKTELIDAIAAAADLSKADAGRALDAVVDSVTDALKKGDQVSLVGFGTFSVKHRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT ++I V FKA LK + Sbjct: 61 RNPQTGAAIEIKASEVPSFKAGKALKDAVN 90 >gi|46581376|ref|YP_012184.1| integration host factor subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|120601447|ref|YP_965847.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46450798|gb|AAS97444.1| integration host factor, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120561676|gb|ABM27420.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311235034|gb|ADP87888.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVK +++ + ++S+ V F+ + D+ ++G+ ++I F +F VK G Sbjct: 1 MNKSELVKMLAENHEIPAEESSVIVNLFFDSVRDALLQGDRVEIRGFGSFKVKGYRGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T V++ P+R+ VF+A LK+ I Sbjct: 61 RNPKTGDNVEVPPKRLPVFRAGKELKEIIN 90 >gi|301156331|emb|CBW15802.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Haemophilus parainfluenzae T3T1] Length = 99 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+ + + ++ L + ++ V F EI S G +K+S F F ++ K SR Sbjct: 3 TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + + RRVV FK L+ R+ + Sbjct: 63 GRNPKTGESIPVSARRVVAFKPGQKLRARVEN 94 >gi|322420779|ref|YP_004200002.1| histone family protein DNA-binding protein [Geobacter sp. M18] gi|320127166|gb|ADW14726.1| histone family protein DNA-binding protein [Geobacter sp. M18] Length = 93 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + G L+RKDS V+ +F+ + ++ G+ ++I F +F ++ + R Sbjct: 1 MTKSELIDKLVEVRGALTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + V I ++ FK L++R+ + Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERVNN 92 >gi|24373948|ref|NP_717991.1| integration host factor, beta subunit [Shewanella oneidensis MR-1] gi|113970263|ref|YP_734056.1| integration host factor subunit beta [Shewanella sp. MR-4] gi|114047548|ref|YP_738098.1| integration host factor subunit beta [Shewanella sp. MR-7] gi|117920423|ref|YP_869615.1| integration host factor subunit beta [Shewanella sp. ANA-3] gi|81744768|sp|Q8EEI1|IHFB_SHEON RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|122944665|sp|Q0HV14|IHFB_SHESR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123325047|sp|Q0HIW8|IHFB_SHESM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975892|sp|A0KWP0|IHFB_SHESA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|24348383|gb|AAN55435.1|AE015680_10 integration host factor, beta subunit [Shewanella oneidensis MR-1] gi|113884947|gb|ABI38999.1| integration host factor, beta subunit [Shewanella sp. MR-4] gi|113888990|gb|ABI43041.1| integration host factor, beta subunit [Shewanella sp. MR-7] gi|117612755|gb|ABK48209.1| integration host factor, beta subunit [Shewanella sp. ANA-3] Length = 95 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V+++ + V FK L++R+ Sbjct: 61 GRNPKTGSSVELEGKYVPHFKPGKELRERV 90 >gi|292487831|ref|YP_003530706.1| integration host factor subunit beta [Erwinia amylovora CFBP1430] gi|292899058|ref|YP_003538427.1| integration host factor subunit beta [Erwinia amylovora ATCC 49946] gi|291198906|emb|CBJ46016.1| integration host factor beta-subunit [Erwinia amylovora ATCC 49946] gi|291553253|emb|CBA20298.1| Integration host factor beta-subunit (IHF-beta) [Erwinia amylovora CFBP1430] gi|312171952|emb|CBX80209.1| Integration host factor beta-subunit (IHF-beta) [Erwinia amylovora ATCC BAA-2158] Length = 95 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|91793110|ref|YP_562761.1| integration host factor, beta subunit [Shewanella denitrificans OS217] gi|122968769|sp|Q12ND8|IHFB_SHEDO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|91715112|gb|ABE55038.1| integration host factor, beta subunit [Shewanella denitrificans OS217] Length = 95 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++D + V FK L++R+ Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >gi|114563293|ref|YP_750806.1| integration host factor, beta subunit [Shewanella frigidimarina NCIMB 400] gi|122299645|sp|Q081U7|IHFB_SHEFN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|114334586|gb|ABI71968.1| integration host factor, beta subunit [Shewanella frigidimarina NCIMB 400] Length = 95 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLETGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK L++R+ Sbjct: 61 GRNPKTGTSVDLEGKYVPHFKPGKELRERV 90 >gi|152983749|ref|YP_001351441.1| putative DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150958907|gb|ABR80932.1| probable DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+++ L+++ + R + L +EI + R +++ + F TF + +G+ G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGASTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT Q VKI V FK L+ + Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >gi|78188818|ref|YP_379156.1| histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] gi|78171017|gb|ABB28113.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii CaD3] Length = 102 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 57/101 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T T+ DLV +I++ GL++ ++ V LF I +S G I+I F +F+++QK Sbjct: 1 MGNTTTKIDLVTTIARNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R RN +T ++V ++ ++V FK S K + + ++ + Sbjct: 61 VRKARNPRTGEKVMVESKQVPSFKISREFKLAVSESLKSSE 101 >gi|212692210|ref|ZP_03300338.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855] gi|212665087|gb|EEB25659.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855] Length = 90 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D + +++ E GLS+ D+ + V + + + G+ + + F TF V ++ +R G Sbjct: 1 MNKADFISAVAAEAGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + I ++V FK + L I Sbjct: 61 INPSTKATITIPAKKVTKFKPGAELADAIK 90 >gi|296116536|ref|ZP_06835146.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295976748|gb|EFG83516.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 95 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 46/95 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV ++++ L++ + V +F I + G+ +++ F TF + Sbjct: 1 MEKPLNKQELVAAVAENADLAKAKAGEVVDAVFGAIEKALSNGQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + GRN +T +E+ I V FK LK+ + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAVSK 95 >gi|121998363|ref|YP_001003150.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] gi|121589768|gb|ABM62348.1| histone family protein DNA-binding protein [Halorhodospira halophila SL1] Length = 91 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL + ++ E G+S++ +T V+ +F I +S GE + I F F V + R G Sbjct: 1 MNKADLAEKVAAETGVSKRVATDAVSAVFTGIEESLASGEDVSIPGFGKFAVVARPERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + + I V FK + LK+ + Sbjct: 61 RNPQTGELIDIPAGMNVRFKPGAPLKRSV 89 >gi|325268085|ref|ZP_08134731.1| integration host factor beta subunit [Kingella denitrificans ATCC 33394] gi|324980470|gb|EGC16136.1| integration host factor beta subunit [Kingella denitrificans ATCC 33394] Length = 99 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 7/98 (7%) Query: 5 ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ +++ + L KD V L + + + +G+ I+I F +F + Sbjct: 1 MTKSELMARLAEVFAEKHSDSALQAKDVEYSVKVLVDTMTRALAKGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ +R GRN +T + V++ ++V FK L++R+ + Sbjct: 61 ERPARTGRNPKTGERVQVPAKKVPHFKPGKELRERVDN 98 >gi|312794857|ref|YP_004027779.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] gi|312166632|emb|CBW73635.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454] Length = 92 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I +G+++++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEIIKTVVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDVVNE 91 >gi|295678172|ref|YP_003606696.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] gi|295438015|gb|ADG17185.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] Length = 92 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + G S+ + + TL I S +GEA+++ F +F ++ +R G Sbjct: 1 MNKQELIDAVAGQTGASKAQTGETLDTLLEVIKKSVSKGEAVQLIGFGSFGSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >gi|66048251|ref|YP_238092.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|63258958|gb|AAY40054.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae pv. syringae B728a] Length = 91 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90 >gi|332703826|ref|ZP_08423914.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553975|gb|EGJ51019.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 91 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K+++++ + ++++ V + I DS ++GE ++I F +F +K+ G Sbjct: 1 MNKSELIKTLAEDKDIHVDEASKIVNAFVDSIKDSLLQGERVEIRGFGSFKIKEYKGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T V ++P+R+ F+ LK+ + Sbjct: 61 RNPKTGDIVDVEPKRLPFFRPGKELKEFLN 90 >gi|302668567|ref|YP_003833015.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302397531|gb|ADL36433.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 94 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV++I+K+ GL++ S + V + + + +++ F TF ++ +R G Sbjct: 1 MNKTELVEAIAKQTGLTKAASEKAVKAFTDVVTKELKKKGKVQLVGFGTFETAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +N QT +KI V FKA LK + + + Sbjct: 61 KNPQTGAAIKIPAATVPKFKAGKALKDTVNGNKK 94 >gi|332970683|gb|EGK09664.1| integration host factor beta subunit [Kingella kingae ATCC 23330] Length = 101 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 5 ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ +++ + L KD V L + + + +G+ I+I F +F + Sbjct: 1 MTKSELMAHLAEVFAERNADSELQSKDIEYSVKVLVDTMTRALAKGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + R+GRN +T + V++ + V FK L++R+ + Sbjct: 61 HRPPRIGRNPKTGERVEVPQKYVPHFKPGKELRERVDES 99 >gi|169824180|ref|YP_001691791.1| DNA binding protein [Finegoldia magna ATCC 29328] gi|302380836|ref|ZP_07269299.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3] gi|303234932|ref|ZP_07321557.1| DNA-binding protein HU [Finegoldia magna BVS033A4] gi|167830985|dbj|BAG07901.1| DNA binding protein [Finegoldia magna ATCC 29328] gi|302311331|gb|EFK93349.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3] gi|302494050|gb|EFL53831.1| DNA-binding protein HU [Finegoldia magna BVS033A4] Length = 96 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+K+ LS+ +S R + + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I VFKA LK+ + Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVNQ 92 >gi|167754539|ref|ZP_02426666.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402] gi|167705371|gb|EDS19950.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402] Length = 94 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 55/94 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M + + +LV+++SKE L++KD+ V T+FN I S V G+ + IS F TF V + Sbjct: 1 MEVVMNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R G + +T +E+ I + V FK S+ LK + Sbjct: 61 ARKGISPKTQEEMVIPASKTVTFKPSNRLKDAMN 94 >gi|284009059|emb|CBA76026.1| DNA-binding protein HU-alpha (HU-2) [Arsenophonus nasoniae] Length = 98 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 51/94 (54%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +++T+ + D+V+ + ++ L++ + + L I D+ GE ++ F TF + Sbjct: 5 VNETMKKGDVVQYVMQKANLNKTQAKNALEALIECITDALKEGEQVQFVGFGTFRTNHRA 64 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+GRN +T E+KI+ V VF A LK+ + Sbjct: 65 ARIGRNPKTGAELKIEAANVPVFVAGKSLKEAVK 98 >gi|238784531|ref|ZP_04628539.1| Integration host factor subunit beta [Yersinia bercovieri ATCC 43970] gi|238792398|ref|ZP_04636032.1| Integration host factor subunit beta [Yersinia intermedia ATCC 29909] gi|238714594|gb|EEQ06598.1| Integration host factor subunit beta [Yersinia bercovieri ATCC 43970] gi|238728324|gb|EEQ19844.1| Integration host factor subunit beta [Yersinia intermedia ATCC 29909] Length = 94 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDRAN 91 >gi|300725859|ref|ZP_07059323.1| DNA-binding protein, HU family [Prevotella bryantii B14] gi|299776847|gb|EFI73393.1| DNA-binding protein, HU family [Prevotella bryantii B14] Length = 94 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 49/93 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+ I+++ GLS+ DS + + I ++ + +++ F TF V + +R Sbjct: 2 KIMNKTELIDKIAEKAGLSKADSKKAFESTVAAIKEALAENDKVQLIGFGTFSVTSRPAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N T +++I + V+ FKA + L + Sbjct: 62 EGINPSTKAKIQIPAKNVIKFKAGAELSDAVNK 94 >gi|295691409|ref|YP_003595102.1| integration host factor subunit beta [Caulobacter segnis ATCC 21756] gi|295433312|gb|ADG12484.1| integration host factor, beta subunit [Caulobacter segnis ATCC 21756] Length = 96 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ + L++KD R V + + + G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ + V FK+ L+ R+ D Sbjct: 61 GRNPRTGEAVEVRAKHVPFFKSGKELRARLNAD 93 >gi|317484455|ref|ZP_07943367.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316924279|gb|EFV45453.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 110 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+ +++ + R + + + + + ++ F TF + + R G Sbjct: 20 MTKADLVAQIAARANMTKAAAERSLNAMLESVQEMLAEDGKLTLTGFGTFVAETRQERQG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + I +VV F+ +LK + Sbjct: 80 RNPRTGDVITIAASKVVRFRPGKMLKDALNK 110 >gi|212703905|ref|ZP_03312033.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC 29098] gi|212672608|gb|EEB33091.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC 29098] Length = 91 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL ++ + + + + ++ GE++ + F +F V ++ +R Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALASGESVTFTGFGSFKVVERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +V F LK I Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAIK 91 >gi|182680278|ref|YP_001834424.1| integration host factor, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182636161|gb|ACB96935.1| integration host factor, alpha subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 125 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 40/94 (42%), Positives = 65/94 (69%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+T+TR +L +++ + GLSRK+S V + +E+ D+ V+GE +K+SSF +F ++ K Sbjct: 24 SQTLTRVNLAEAVYRSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRSKAE 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+GRN +T EV I RRV+VFK S++LK ++ Sbjct: 84 RIGRNPKTGIEVPITQRRVLVFKPSNVLKAKVNG 117 >gi|167469217|ref|ZP_02333921.1| integration host factor, alpha subunit [Yersinia pestis FV-1] Length = 98 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 43/81 (53%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 GLS++D+ V F E+ + GE +K+S F F ++ K R GRN +T +++ I Sbjct: 16 LGLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 75 Query: 78 RRVVVFKASSILKKRIMDDMR 98 RRVV F+ LK R+ Sbjct: 76 RRVVTFRPGQKLKSRVESATP 96 >gi|225010796|ref|ZP_03701264.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] gi|225005004|gb|EEG42958.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] Length = 90 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGGRVSLVGFGSWSVSRRNARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +KI + VV FKA + L K + Sbjct: 61 RNPQTGATIKIAAKNVVKFKAGAELSKSVN 90 >gi|170726660|ref|YP_001760686.1| integration host factor subunit beta [Shewanella woodyi ATCC 51908] gi|226709813|sp|B1KF50|IHFB_SHEWM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|169812007|gb|ACA86591.1| integration host factor, beta subunit [Shewanella woodyi ATCC 51908] Length = 95 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLAMRQSQLSAKEVESAIKEMLEQMAQTLEGGDRIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++D + V FK L++R+ Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >gi|295101017|emb|CBK98562.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii L2-6] Length = 89 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ ++ +S+K + V F + + GE I IS F TF V+++ R G Sbjct: 1 MTKTDLIAQVAANTEMSKKSAEMAVNAAFEALGKAMAEGEKISISGFGTFEVRERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + I + +VFK LK + Sbjct: 61 INPRTREPITIAASKSIVFKPGKALKDTL 89 >gi|260593420|ref|ZP_05858878.1| DNA-binding protein HU-beta [Prevotella veroralis F0319] gi|260534696|gb|EEX17313.1| DNA-binding protein HU-beta [Prevotella veroralis F0319] Length = 91 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ LS+ D+ + + I D+ V G+ +++ F TF ++ + G Sbjct: 1 MNKTELIEKIAASANLSKADAKKALDATTEAIKDALVAGDKVQLVGFGTFSTNERPAHEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T Q+++I ++V FKA + L + Sbjct: 61 MNPATKQKIQIPAKKVAKFKAGAELSDAVNK 91 >gi|297570483|ref|YP_003691827.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296926398|gb|ADH87208.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 91 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++++ L +++ T+ + + RGE I+I F +F VK+ S G Sbjct: 1 MNKSELIEALARNTELPIREAGAVTGTILEAMTAAMARGENIEIRGFGSFVVKEYESYYG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++K+ P+R+ FK L++++ Sbjct: 61 RNPKTGEKIKVPPKRLPFFKVGKELREKLN 90 >gi|320539237|ref|ZP_08038907.1| integration host factor (IHF), DNA-binding protein, beta subunit [Serratia symbiotica str. Tucson] gi|320030629|gb|EFW12638.1| integration host factor (IHF), DNA-binding protein, beta subunit [Serratia symbiotica str. Tucson] Length = 94 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLASQQSHIPAKTVEDAVKEILEHMAVTLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91 >gi|126174292|ref|YP_001050441.1| integration host factor subunit beta [Shewanella baltica OS155] gi|153000798|ref|YP_001366479.1| integration host factor subunit beta [Shewanella baltica OS185] gi|160875507|ref|YP_001554823.1| integration host factor subunit beta [Shewanella baltica OS195] gi|217973243|ref|YP_002357994.1| integration host factor subunit beta [Shewanella baltica OS223] gi|304408839|ref|ZP_07390460.1| integration host factor, beta subunit [Shewanella baltica OS183] gi|307302842|ref|ZP_07582597.1| integration host factor, beta subunit [Shewanella baltica BA175] gi|166975888|sp|A3D4A9|IHFB_SHEB5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975889|sp|A6WNM7|IHFB_SHEB8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|189045043|sp|A9L2X4|IHFB_SHEB9 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803540|sp|B8EA98|IHFB_SHEB2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|125997497|gb|ABN61572.1| integration host factor, beta subunit [Shewanella baltica OS155] gi|151365416|gb|ABS08416.1| integration host factor, beta subunit [Shewanella baltica OS185] gi|160861029|gb|ABX49563.1| integration host factor, beta subunit [Shewanella baltica OS195] gi|217498378|gb|ACK46571.1| integration host factor, beta subunit [Shewanella baltica OS223] gi|304352660|gb|EFM17057.1| integration host factor, beta subunit [Shewanella baltica OS183] gi|306913202|gb|EFN43624.1| integration host factor, beta subunit [Shewanella baltica BA175] gi|315267694|gb|ADT94547.1| integration host factor, beta subunit [Shewanella baltica OS678] Length = 95 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V ++ + V FK L++R+ Sbjct: 61 GRNPKTGSSVDLEGKYVPHFKPGKELRERV 90 >gi|78356842|ref|YP_388291.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219247|gb|ABB38596.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 91 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 55/91 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K +S+E +S +++T VTT + + D+ G+ ++I F +F VKQ G Sbjct: 1 MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V + P+++ F+A LK+ + D Sbjct: 61 RNPKTGEIVNVQPKQLPFFRAGKELKEFLND 91 >gi|157369953|ref|YP_001477942.1| integration host factor subunit beta [Serratia proteamaculans 568] gi|270261193|ref|ZP_06189466.1| integration host factor, beta subunit [Serratia odorifera 4Rx13] gi|166975886|sp|A8GCH4|IHFB_SERP5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|157321717|gb|ABV40814.1| integration host factor, beta subunit [Serratia proteamaculans 568] gi|270044677|gb|EFA17768.1| integration host factor, beta subunit [Serratia odorifera 4Rx13] Length = 94 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91 >gi|119510023|ref|ZP_01629164.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414] gi|119465347|gb|EAW46243.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414] Length = 100 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 55/100 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++S++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVSEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN +TN++++I RV F A + ++++ ++ + Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLFREKVAPPKEPKEVKE 100 >gi|39997218|ref|NP_953169.1| integration host factor subunit alpha [Geobacter sulfurreducens PCA] gi|39984108|gb|AAR35496.1| integration host factor, alpha subunit [Geobacter sulfurreducens PCA] Length = 91 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 57/90 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ +S G+S+KDS V +F+ + ++ GE IKIS F F +K K +R G Sbjct: 1 MTKADIVERVSDRCGISKKDSIEMVELVFSILKNTLEIGEDIKISGFGKFEIKNKHARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + I+ RR++ FK S+ILK I Sbjct: 61 RNPQTGDAITIEARRILTFKPSTILKNNIN 90 >gi|305666663|ref|YP_003862950.1| DNA-binding protein HU-beta [Maribacter sp. HTCC2170] gi|88707468|gb|EAQ99712.1| DNA-binding protein HU-beta (NS1) (HU-1) [Maribacter sp. HTCC2170] Length = 90 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKSLESFLGNVEGSLKKGDRVSLVGFGSWSVSRRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + ++I + VV FKA + L K + Sbjct: 61 RNPSTGKTIQIAAKNVVKFKAGADLGKAVN 90 >gi|67920710|ref|ZP_00514229.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii WH 8501] gi|67856827|gb|EAM52067.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii WH 8501] Length = 93 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ + +++K + ++ + I ++ + + + F +F + + +R G Sbjct: 1 MNKSELIDAVANKAEVTKKQAEMVISATIDTIMEAVASDDKVTLVGFGSFESRDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+++ I +V F A K+ + Sbjct: 61 RNPKTNEKMNIPATKVPAFSAGKKFKEAVA 90 >gi|302878375|ref|YP_003846939.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302581164|gb|ADL55175.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 93 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+ +++ L KD+ V + + + + RG ++I F +F + + R Sbjct: 1 MTRSDLIARLAELHPQLLAKDAEMAVKVILDALSSTLSRGGRVEIRGFGSFGLNYRPPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +V + + V FKA L++R+ Sbjct: 61 GRNPKTGDKVGVPAKYVPHFKAGKDLRERVGKA 93 >gi|325578436|ref|ZP_08148571.1| integration host factor subunit alpha [Haemophilus parainfluenzae ATCC 33392] gi|325160172|gb|EGC72301.1| integration host factor subunit alpha [Haemophilus parainfluenzae ATCC 33392] Length = 110 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+ + + ++ L + ++ V F EI S G +K+S F F ++ K SR Sbjct: 14 TITKIDITEYLLDKYQLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + + RRVV FK L+ R+ + Sbjct: 74 GRNPKTGESIPVSARRVVAFKPGQKLRARVEN 105 >gi|323142051|ref|ZP_08076899.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067] gi|322413438|gb|EFY04309.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067] Length = 118 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++++ GL++KD + +T + + +G+ +++ F TF + + R G Sbjct: 27 MNKTELIAAVAEKAGLTKKDVEKTITATLETVKEVVAKGDKVQVVGFGTFEARARKEREG 86 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N Q ++V I + FKA K + Sbjct: 87 KNPQNGEKVVIPAATIPAFKAGKAFKDAVN 116 >gi|312879957|ref|ZP_07739757.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260] gi|310783248|gb|EFQ23646.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260] Length = 93 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DLV ++K L++K + V LF + + +G+ +++ F TF V+++ +R Sbjct: 1 MTKADLVNELAKAVEDLTKKKAAEIVDALFETVQGALAKGDKVQVVGFGTFEVQRRAARQ 60 Query: 64 GRNLQ-TNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN Q + + I + V VF+A LK + Sbjct: 61 GRNPQDPKKTINIPAKNVPVFRAGKALKDLVNK 93 >gi|16127816|ref|NP_422380.1| integration host factor subunit beta [Caulobacter crescentus CB15] gi|221236637|ref|YP_002519074.1| integration host factor subunit beta [Caulobacter crescentus NA1000] gi|21362615|sp|Q9A2H5|IHFB_CAUCR RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803531|sp|B8H6A5|IHFB_CAUCN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|13425330|gb|AAK25548.1| integration host factor beta subunit [Caulobacter crescentus CB15] gi|220965810|gb|ACL97166.1| integration host factor beta-subunit [Caulobacter crescentus NA1000] Length = 96 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ + L++KD R V + + + G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + V FK+ L+ R+ D Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNAD 93 >gi|38637989|ref|NP_942963.1| putative histone-like protein [Ralstonia eutropha H16] gi|32527327|gb|AAP86077.1| putative histone-like protein [Ralstonia eutropha H16] Length = 114 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 3 KTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T+++L+++I+ GL++ + + + I D+ +G+A+ + F TF ++ Sbjct: 20 RIMTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAE 79 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+ RN +T +E+K++ R V FKA ++ + + Sbjct: 80 RMARNPRTGEEIKVEAARTVKFKAGQRFREAVNQE 114 >gi|332292782|ref|YP_004431391.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170868|gb|AEE20123.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 90 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ G+++ + + + + ++ + G + + F ++ V ++ +R G Sbjct: 1 MNKSELIDGMAEHAGITKAAAKKALESFLGDVEKTLKDGGRVSLVGFGSWSVSKRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA S L + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGSELATSVN 90 >gi|146328836|ref|YP_001209044.1| integration host factor, beta subunit [Dichelobacter nodosus VCS1703A] gi|166918544|sp|A5EWQ2|IHFB_DICNV RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|146232306|gb|ABQ13284.1| integration host factor, beta subunit [Dichelobacter nodosus VCS1703A] Length = 96 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ L +D V + IC + +G+ ++I F +F + + SR Sbjct: 1 MTKSELIERLVMKYPQLRAQDVEDTVKLMIERICHTLEKGDRVEIRGFGSFSLHYRESRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++ + + F+A L++R+ +++ Sbjct: 61 GRNPKTGESVRVPAKSIPYFRAGKELRERVDEEIN 95 >gi|325288078|ref|YP_004263868.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] gi|324323532|gb|ADY30997.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] Length = 90 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G+++ + + + + + S +G+ + + F ++ V ++ +R G Sbjct: 1 MNKTELIDAMAADAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVTRREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI + VV FKA + L + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGTELSNSVN 90 >gi|22126657|ref|NP_670080.1| integration host factor subunit beta [Yersinia pestis KIM 10] gi|45441027|ref|NP_992566.1| integration host factor subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51595758|ref|YP_069949.1| integration host factor subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806681|ref|YP_650597.1| integration host factor subunit beta [Yersinia pestis Antiqua] gi|108812745|ref|YP_648512.1| integration host factor subunit beta [Yersinia pestis Nepal516] gi|145599574|ref|YP_001163650.1| integration host factor subunit beta [Yersinia pestis Pestoides F] gi|149366650|ref|ZP_01888684.1| integration host factor beta-subunit [Yersinia pestis CA88-4125] gi|153947721|ref|YP_001401544.1| integration host factor subunit beta [Yersinia pseudotuberculosis IP 31758] gi|162421385|ref|YP_001606430.1| integration host factor subunit beta [Yersinia pestis Angola] gi|165924753|ref|ZP_02220585.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938957|ref|ZP_02227510.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009945|ref|ZP_02230843.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211556|ref|ZP_02237591.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399912|ref|ZP_02305430.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419646|ref|ZP_02311399.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424246|ref|ZP_02315999.1| integration host factor, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470895|ref|ZP_02335599.1| integration host factor, beta subunit [Yersinia pestis FV-1] gi|170024892|ref|YP_001721397.1| integration host factor subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894836|ref|YP_001871948.1| integration host factor subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928541|ref|YP_002346416.1| integration host factor subunit beta [Yersinia pestis CO92] gi|229841363|ref|ZP_04461522.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843468|ref|ZP_04463614.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229895841|ref|ZP_04511011.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Pestoides A] gi|229903153|ref|ZP_04518266.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Nepal516] gi|238757620|ref|ZP_04618804.1| Integration host factor subunit beta [Yersinia aldovae ATCC 35236] gi|270486948|ref|ZP_06204022.1| integration host factor subunit beta [Yersinia pestis KIM D27] gi|21362608|sp|Q8ZGB1|IHFB_YERPE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|81691814|sp|Q66CI5|IHFB_YERPS RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123073279|sp|Q1CGG8|IHFB_YERPN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|123372652|sp|Q1CA70|IHFB_YERPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975897|sp|A7FJW6|IHFB_YERP3 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166975898|sp|A4TN15|IHFB_YERPP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709822|sp|B2KA26|IHFB_YERPB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709823|sp|A9R7I5|IHFB_YERPG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709824|sp|B1JRD6|IHFB_YERPY RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|21959671|gb|AAM86331.1|AE013881_1 integration host factor (IHF), beta subunit [Yersinia pestis KIM 10] gi|45435886|gb|AAS61443.1| integration host factor beta-subunit [Yersinia pestis biovar Microtus str. 91001] gi|51589040|emb|CAH20658.1| integration host factor beta-subunit [Yersinia pseudotuberculosis IP 32953] gi|108776393|gb|ABG18912.1| integration host factor beta-subunit [Yersinia pestis Nepal516] gi|108778594|gb|ABG12652.1| integration host factor beta-subunit [Yersinia pestis Antiqua] gi|115347152|emb|CAL20045.1| integration host factor beta-subunit [Yersinia pestis CO92] gi|145211270|gb|ABP40677.1| integration host factor beta-subunit [Yersinia pestis Pestoides F] gi|149291024|gb|EDM41099.1| integration host factor beta-subunit [Yersinia pestis CA88-4125] gi|152959216|gb|ABS46677.1| integration host factor, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162354200|gb|ABX88148.1| integration host factor, beta subunit [Yersinia pestis Angola] gi|165913104|gb|EDR31728.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923813|gb|EDR40945.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991341|gb|EDR43642.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207327|gb|EDR51807.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962387|gb|EDR58408.1| integration host factor, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050620|gb|EDR62028.1| integration host factor, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057095|gb|EDR66858.1| integration host factor, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751426|gb|ACA68944.1| integration host factor, beta subunit [Yersinia pseudotuberculosis YPIII] gi|186697862|gb|ACC88491.1| integration host factor, beta subunit [Yersinia pseudotuberculosis PB1/+] gi|229678923|gb|EEO75026.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Nepal516] gi|229689815|gb|EEO81876.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697729|gb|EEO87776.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700764|gb|EEO88793.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis Pestoides A] gi|238704125|gb|EEP96658.1| Integration host factor subunit beta [Yersinia aldovae ATCC 35236] gi|270335452|gb|EFA46229.1| integration host factor subunit beta [Yersinia pestis KIM D27] gi|320015748|gb|ADV99319.1| integration host factor (IHF), DNA-binding protein, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|289677399|ref|ZP_06498289.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae FF5] gi|302187085|ref|ZP_07263758.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae 642] gi|330898762|gb|EGH30181.1| histone-like DNA-binding protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937458|gb|EGH41423.1| histone-like DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952450|gb|EGH52710.1| histone-like DNA-binding protein [Pseudomonas syringae Cit 7] gi|330976274|gb|EGH76336.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 91 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++ +I+++ L+++ S R + + EI + R +++ + F TF + +G+R G Sbjct: 1 MRKPEVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90 >gi|118580291|ref|YP_901541.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503001|gb|ABK99483.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 54/94 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ + +S G ++K+S V +F+ I + GE IKI+ F F VKQK R G Sbjct: 1 MTKADIFEKVSSNLGYTKKESAELVEAVFSLIKSTLESGEKIKIAGFGNFEVKQKADRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN Q + + I+ RR++ FK S +LK I + Sbjct: 61 RNPQNGETITIEARRILTFKPSGVLKTAINGAKQ 94 >gi|52425530|ref|YP_088667.1| HimA protein [Mannheimia succiniciproducens MBEL55E] gi|81691358|sp|Q65SH8|IHFB_MANSM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|52307582|gb|AAU38082.1| HimA protein [Mannheimia succiniciproducens MBEL55E] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S+ ++ +S K V + + + G+ I+I F +F + + RV Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90 >gi|85058972|ref|YP_454674.1| integration host factor subunit beta [Sodalis glossinidius str. 'morsitans'] gi|123766455|sp|Q2NUA6|IHFB_SODGM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|84779492|dbj|BAE74269.1| integration host factor beta-subunit [Sodalis glossinidius str. 'morsitans'] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + + K V + + + GE I+I F +F + + R+ Sbjct: 1 MTKSELIERLAGQHAHIQAKVVEDAVKEMLEHMATTLASGERIEIRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V+++ + V FK L+ R Sbjct: 61 GRNPKTGDRVELEGKYVPHFKPGKELRDRAN 91 >gi|319403502|emb|CBI77081.1| integration host factor beta chain [Bartonella rochalimae ATCC BAA-1498] gi|319406416|emb|CBI80056.1| integration host factor beta chain [Bartonella sp. 1-1C] Length = 92 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ I++ L ++D+ V+ +F +I + G+ +++ F F +K + +R Sbjct: 1 MVKSELVQIIARHNPHLMQRDAENVVSAIFEKISAALANGQRVELRGFGAFSIKTRSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRLNK 92 >gi|291544776|emb|CBL17885.1| bacterial nucleoid protein Hbs [Ruminococcus sp. 18P13] Length = 91 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +I+ G S+KD+ R + + + I + GE I + F TF V+++ + Sbjct: 1 MTKADLIDAIAASAGSSKKDAERALQVVLSTITEKLAAGEKISLIGFGTFEVRERKEKTC 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ + VFKA LK + Sbjct: 61 INPRTKEKLTAPACKAPVFKAGKALKDAVNK 91 >gi|188579482|ref|YP_001922927.1| integration host factor, beta subunit [Methylobacterium populi BJ001] gi|179342980|gb|ACB78392.1| integration host factor, beta subunit [Methylobacterium populi BJ001] Length = 102 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ +G+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + V + + + VFK ++ R+ G + Sbjct: 61 GRNPRTGESVSVSEKAIPVFKTGKEMRLRLNRAGIGDEQPS 101 >gi|313679460|ref|YP_004057199.1| bacterial nucleoid protein hbs [Oceanithermus profundus DSM 14977] gi|313152175|gb|ADR36026.1| bacterial nucleoid protein Hbs [Oceanithermus profundus DSM 14977] Length = 98 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 52/91 (57%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T+SDLV +++ GL +KD+ + T +EI R ++++ F TF V+++ +R Sbjct: 6 KTVTKSDLVNHVAEITGLKKKDAKACIDTFLDEIATFLDRDYKVQLTGFGTFEVRKRKAR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G T +++KI + FK LK+++ Sbjct: 66 TGVKPGTTEKIKIPASKYPAFKPGKALKEKV 96 >gi|225849331|ref|YP_002729495.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] gi|225644673|gb|ACN99723.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 55/94 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ ++++ GL + ++ R V + ++ +GE I F+V+++ +R G Sbjct: 1 MTKSELIAKVAEKAGLKKAEAERAVNAAIEAVVEALSKGERTAIPGLGVFNVRERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T +E+KI R+VV F A+ LK+ + + Sbjct: 61 RNPRTGKEIKIPARKVVAFTAAKSLKEALNAKKK 94 >gi|291287116|ref|YP_003503932.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290884276|gb|ADD67976.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 91 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 59/91 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I ++ GL++KD + V LFNE+ D + +KIS F F VK++G R+G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T E I+PR VVVF+ S I K + D Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91 >gi|85375322|ref|YP_459384.1| integration host factor beta-subunit [Erythrobacter litoralis HTCC2594] gi|84788405|gb|ABC64587.1| integration host factor beta-subunit [Erythrobacter litoralis HTCC2594] Length = 92 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++++++ L ++ + V F+EI V G +++ F F +++ +R Sbjct: 1 MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + +RV FK ++ + + Sbjct: 61 GRNPRTGEPVSVPAKRVPYFKPGKEMRNALNE 92 >gi|332308727|ref|YP_004436577.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176056|gb|AEE25309.1| histone family protein DNA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 92 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 43/92 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +++ ++ G++++++ + + + + + + + F F + + R+G Sbjct: 1 MNKQHVIEIMALASGITQREAKLALNAFTDAVQVTLQNNDKVSLVGFGNFSTRHRAERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + + I + FKAS LK + Sbjct: 61 RNPQTGEPLTIPAATIPEFKASKCLKDSCNNA 92 >gi|224541850|ref|ZP_03682389.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM 15897] gi|224525200|gb|EEF94305.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM 15897] Length = 90 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +S++ L++KD+ V T+F+ + +S + G+ + IS F TF + R G Sbjct: 1 MNKKELINIVSEKRDLTKKDAEILVNTVFDTMVESMIDGDKVLISGFGTFKINHCLERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + +T + + I R V FK S+ LK + Sbjct: 61 VSPKTKEPIIIPASRTVSFKPSNRLKDAMN 90 >gi|218887884|ref|YP_002437205.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758838|gb|ACL09737.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 91 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL S+ + + + D+ GE++ + F +F V ++ +R Sbjct: 1 MTKAELVEKIRAKAGLASKVQAEGALDATIAVLADALAAGESVTFTGFGSFKVTERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +VV F +LK + Sbjct: 61 GRNPRTGEEITIPSGKVVKFTPGKLLKDSVK 91 >gi|257094678|ref|YP_003168319.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047202|gb|ACV36390.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 96 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 5 ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TRS+L+ ++ L+ KD V + + ++ V G I+I F +F + Sbjct: 1 MTRSELITRLAAHSHFAQLTAKDDELTVKAILEGMSEALVSGGRIEIHGFGSFALNDSAP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN T + V + +RV F L++R+ Sbjct: 61 RNGRNPMTGETVPVPAKRVPHFTPGKELRERVE 93 >gi|148658098|ref|YP_001278303.1| histone family protein DNA-binding protein [Roseiflexus sp. RS-1] gi|148570208|gb|ABQ92353.1| bacterial nucleoid protein Hbs [Roseiflexus sp. RS-1] Length = 92 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ S+K++ V I ++ RGE + ++ F TF V+Q+ +R G Sbjct: 1 MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N QT +++I + F ASS LK + D Sbjct: 61 VNPQTRSKIQIPATKTPGFSASSTLKNAVKDS 92 >gi|83814878|ref|YP_445501.1| DNA-binding protein HU [Salinibacter ruber DSM 13855] gi|83756272|gb|ABC44385.1| DNA-binding protein HU [Salinibacter ruber DSM 13855] Length = 100 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 50/98 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL+ I+ GL++ ++ V + + G I++ F F V+ + R Sbjct: 2 SMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN QTN+ V+I+ R VF+ S L + + + + Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAAHKADE 99 >gi|296282081|ref|ZP_06860079.1| integration host factor beta-subunit [Citromicrobium bathyomarinum JL354] Length = 93 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++ L ++ + V F EI G I++ F F +++ +R Sbjct: 1 MIRSELLQKLAQDNPELRAQEVEQVVDIFFEEIAQRLAEGGRIELRGFGAFSTREREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + +RV FK ++ + D Sbjct: 61 GRNPRTGEAVDVPAKRVPYFKPGKEMRNALNPD 93 >gi|307292730|ref|ZP_07572576.1| integration host factor, beta subunit [Sphingobium chlorophenolicum L-1] gi|306880796|gb|EFN12012.1| integration host factor, beta subunit [Sphingobium chlorophenolicum L-1] Length = 96 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ +++E L+ ++ R V F EI D G +++ F F + + +R Sbjct: 1 MIRSELIQKLAEENQNLNLQEVERIVDLFFKEIVDRLSTGGRVELRGFGAFTTRARDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T ++V +D +RV FK +++R+ Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERLN 91 >gi|284007585|emb|CBA73152.1| integration host factor beta-subunit [Arsenophonus nasoniae] Length = 106 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+TRS+L++ I++ + K V + + + + +GE I+I F +F + + R Sbjct: 12 TMTRSELIERLINQLAHIPAKLIEEAVKEMLDHMAITLAKGERIEIRGFGSFSLHYRAPR 71 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +GRN +T +V + + V FK L+ R+ Sbjct: 72 IGRNPKTGDKVDLKGKHVPHFKPGKELRDRVN 103 >gi|158423235|ref|YP_001524527.1| histone-like DNA-binding protein [Azorhizobium caulinodans ORS 571] gi|158330124|dbj|BAF87609.1| histone-like bacterial DNA-binding protein [Azorhizobium caulinodans ORS 571] Length = 92 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ ++++E L++ + V F+ I + GE +K+ F +F V + +R GR Sbjct: 3 TKNELIAAVAEEAKLTKAAAAAAVDATFDIIAKALKDGEEVKLIGFGSFSVVTRAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + VKI + F LK+ + D Sbjct: 63 NPRTGKPVKIAASKAPKFTPGKGLKEAVND 92 >gi|59712365|ref|YP_205141.1| integration host factor (IHF), DNA-binding protein, beta subunit [Vibrio fischeri ES114] gi|197334359|ref|YP_002156580.1| integration host factor, beta subunit [Vibrio fischeri MJ11] gi|75506974|sp|Q5E3Z3|IHFB_VIBF1 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709817|sp|B5FG57|IHFB_VIBFM RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|59480466|gb|AAW86253.1| integration host factor (IHF), DNA-binding protein, beta subunit [Vibrio fischeri ES114] gi|197315849|gb|ACH65296.1| integration host factor, beta subunit [Vibrio fischeri MJ11] Length = 93 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + SK+ LS K V + ++ + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEQLCSKKPQLSAKQVEDTVKEILEQMATTLEGGDRIEIRGFGSFSLHYREPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L++R+ Sbjct: 61 GRNPKTGDKVELDGKFVPHFKPGKELRERVN 91 >gi|34498500|ref|NP_902715.1| integration host factor beta-subunit [Chromobacterium violaceum ATCC 12472] gi|81711737|sp|Q7NTK9|IHFB_CHRVO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|34104355|gb|AAQ60714.1| integration host factor beta-subunit [Chromobacterium violaceum ATCC 12472] Length = 104 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISKE-----FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+S+L+ +S+ L KD+ V T+ + + ++ +G I+I F +F + + Sbjct: 1 MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN ++ V + + V FKA L++R+ Sbjct: 61 PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERV 94 >gi|126663449|ref|ZP_01734446.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] gi|126624397|gb|EAZ95088.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] Length = 91 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ G+++ + + + + + + +G + + F ++ V ++ +R G Sbjct: 1 MNKSELIDAMAASAGITKAAAKLALESFLSNVEGTLNKGGRVSLVGFGSWSVSKRAARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI + VV FKA + L+ + Sbjct: 61 RNPQTGKTIKIAAKNVVKFKAGAELEGAVNK 91 >gi|123441853|ref|YP_001005836.1| integration host factor subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162205|ref|YP_004298782.1| integration host factor subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166975896|sp|A1JMJ0|IHFB_YERE8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|122088814|emb|CAL11620.1| integration host factor beta-subunit [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325666435|gb|ADZ43079.1| integration host factor subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862895|emb|CBX73032.1| integration host factor subunit beta [Yersinia enterocolitica W22703] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPTKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDRAN 91 >gi|237801808|ref|ZP_04590269.1| integration host factor, beta subunit, putative [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024667|gb|EGI04723.1| integration host factor, beta subunit, putative [Pseudomonas syringae pv. oryzae str. 1_6] Length = 91 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++ +I+++ +++ + + + + EI + R E++ + F TF + +G+R G Sbjct: 1 MRKPEVAAAIAEKADITKDQAKKVLDAILEEITGALHRKESVTLVGFGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90 >gi|149927320|ref|ZP_01915576.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105] gi|149824034|gb|EDM83257.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105] Length = 98 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 44/97 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + S+ + + + + + G+ + + F TF + +R G Sbjct: 1 MNKTELIDAIATKSECSKAAAGKMLDAFIDTVSQQMADGDKVVLVGFGTFQTGARAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +T + +KI V F LK ++ +K Sbjct: 61 RNPRTGETIKIAAAVVPKFTPGQGLKTKVNTKPAKKK 97 >gi|30249908|ref|NP_841978.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] gi|81722152|sp|Q82TD7|IHFB_NITEU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|30180945|emb|CAD85872.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea ATCC 19718] Length = 105 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L KD+ V + + + S RGE I+I F +F + + SRV Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLSRGERIEIRGFGSFDLNYRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GRN ++ ++V + + V FKA +++ I + K Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSGPKQHK 98 >gi|238789316|ref|ZP_04633103.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC 33641] gi|238722648|gb|EEQ14301.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC 33641] Length = 94 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I+I F +F + + RV Sbjct: 1 MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L+ R Sbjct: 61 GRNPKTGTKVELDGKYVPHFKPGKELRDRAN 91 >gi|226952951|ref|ZP_03823415.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter sp. ATCC 27244] gi|294650533|ref|ZP_06727890.1| integration host factor subunit beta [Acinetobacter haemolyticus ATCC 19194] gi|226836272|gb|EEH68655.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter sp. ATCC 27244] gi|292823530|gb|EFF82376.1| integration host factor subunit beta [Acinetobacter haemolyticus ATCC 19194] Length = 100 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ G+ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEDAVKIMIDQMIEALSNGDRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T + V + + V FK L+ + + Sbjct: 63 PRLGRNPKTGKAVDVAAKAVPHFKPGKALRDAVNES 98 >gi|212696155|ref|ZP_03304283.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM 7454] gi|325846494|ref|ZP_08169409.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676784|gb|EEB36391.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM 7454] gi|325481252|gb|EGC84293.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 93 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ R + + +S + E +++ F TF + + +R G Sbjct: 1 MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLQKEEKVQLVGFGTFETRDRKAREG 60 Query: 65 RNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95 RN + + +KI + VFKA LK+ + + Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAVNN 92 >gi|303256838|ref|ZP_07342852.1| integration host factor, beta subunit [Burkholderiales bacterium 1_1_47] gi|330998915|ref|ZP_08322642.1| integration host factor, beta subunit [Parasutterella excrementihominis YIT 11859] gi|302860329|gb|EFL83406.1| integration host factor, beta subunit [Burkholderiales bacterium 1_1_47] gi|329576129|gb|EGG57648.1| integration host factor, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 100 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 5 ITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+S+L+ ++ + L+ +D V ++ N + + +G I+I F +F + + Sbjct: 1 MTKSELIALLAADPAVIGNHLTARDVDDAVNSILNAMTAALAQGSRIEIRGFGSFSLNYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RVGRN ++ V++ + V FKA +++R+ Sbjct: 61 PPRVGRNPKSGDTVEVPAKIVPHFKAGKEMRERVDK 96 >gi|226939799|ref|YP_002794872.1| integration host factor, beta subunit [Laribacter hongkongensis HLHK9] gi|254803536|sp|C1D546|IHFB_LARHH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226714725|gb|ACO73863.1| integration host factor, beta subunit [Laribacter hongkongensis HLHK9] Length = 99 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ L KD+ V T+ + + S G+ I+I F +F + + R Sbjct: 1 MTKSELIARLAERYPHLVAKDTELAVKTILDAMAVSLASGQRIEIRGFGSFDLNYRPPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FKA L++R+ Sbjct: 61 GRNPKSGSSVHVPEKFVPHFKAGKELRERV 90 >gi|92115364|ref|YP_575292.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] gi|91798454|gb|ABE60593.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM 3043] Length = 90 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I++ LS+ +++ + + +EI + +G+ + + F F V+++ +R G Sbjct: 1 MRKPELAAAIAERADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + + I + V FK LK + Sbjct: 61 KNPQTGKPLTIPASKTVAFKPGKALKDAVK 90 >gi|46202467|ref|ZP_00208527.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 92 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ +++ D+ + +F I + G+ +++ F TF V + +R G Sbjct: 1 MNKSELIAAVADGAKMTKADAGNAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + + I + F A LK I Sbjct: 61 RNPQTGKALTIAASKSAKFTAGKSLKDTING 91 >gi|298368578|ref|ZP_06979896.1| integration host factor, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282581|gb|EFI24068.1| integration host factor, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 104 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAEKNGTHLMAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|257074499|ref|YP_003162896.1| integration host factor, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048720|gb|ACV37905.1| integration host factor, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 95 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ I ++ L+ KD V +F + ++ GE I+I F +F + + R+ Sbjct: 1 MTRSELIAQITARSAALTVKDVETAVKAIFEGMTETLANGERIEIRGFGSFRLAYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T V + + V FKA L R+ D Sbjct: 61 GRNPMTGDTVPVPAKAVPHFKAGRELAARVNSD 93 >gi|303326015|ref|ZP_07356458.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] gi|302863931|gb|EFL86862.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] Length = 91 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL ++ + + + + ++ GE++ + F +F V + +R Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVASLREALADGESVTFTGFGSFKVVARAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I +V F LK I Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAIK 91 >gi|187729724|ref|YP_001837313.1| integration host factor subunit A-like protein [Acidithiobacillus caldus] gi|167782109|gb|ACA00180.1| integration host factor subunit A-like protein [Acidithiobacillus caldus] Length = 112 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 49/87 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR DL ++ G + ++ V F++I + +GE +K+S F F ++ K +R Sbjct: 2 TVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T V+I RRVV F AS LK Sbjct: 62 GRNPKTKVPVEITARRVVTFHASQSLK 88 >gi|329850595|ref|ZP_08265440.1| integration host factor subunit alpha [Asticcacaulis biprosthecum C19] gi|328840910|gb|EGF90481.1| integration host factor subunit alpha [Asticcacaulis biprosthecum C19] Length = 100 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 60/92 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+T+TR++L + + E GL R++ V + + D+ RGE +K+S F F V++K + Sbjct: 3 SQTLTRAELFEDVHNELGLPRQECAAIVERTLDLVVDALERGEMVKLSGFGVFQVREKNA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T + IDPR+V+ F+AS I+K R+ Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94 >gi|51245274|ref|YP_065158.1| integration host factor, alpha subunit [Desulfotalea psychrophila LSv54] gi|50876311|emb|CAG36151.1| related to integration host factor, alpha subunit [Desulfotalea psychrophila LSv54] Length = 103 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR ++ + ++ + G S+ + V + ++ D+ + GE+IK+ F TF V+ K R G Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I R+ V F+ S L++++ + Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQVNE 103 >gi|194364617|ref|YP_002027227.1| histone family protein DNA-binding protein [Stenotrophomonas maltophilia R551-3] gi|254523802|ref|ZP_05135857.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14] gi|194347421|gb|ACF50544.1| histone family protein DNA-binding protein [Stenotrophomonas maltophilia R551-3] gi|219721393|gb|EED39918.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14] Length = 90 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ L++ +S+R V + + + G+A+ + F TF V+ + +R G Sbjct: 1 MNKTELIDAVAEAADLTKAESSRAVDAVVAAVTKALKDGDAVTLVGFGTFQVRDRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDTIKIAASKNPSFKAGKALKDAVN 90 >gi|317056256|ref|YP_004104723.1| histone family protein DNA-binding protein [Ruminococcus albus 7] gi|315448525|gb|ADU22089.1| histone family protein DNA-binding protein [Ruminococcus albus 7] Length = 92 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+++ G S+K++ + + T+ + I + GE + + F TF V+ + ++V Sbjct: 1 MNKAELINVIAEKGGYSKKEADKALATVLDSITGALENGEKVTLVGFGTFEVRDRAAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T V + R+V FKA S LK + Sbjct: 61 MNPVTKAPVDVPARKVPAFKAGSALKAVVDK 91 >gi|56552697|ref|YP_163536.1| integration host factor subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241762613|ref|ZP_04760686.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753662|ref|YP_003226555.1| integration host factor subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544271|gb|AAV90425.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241372808|gb|EER62512.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553025|gb|ACV75971.1| integration host factor, beta subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 94 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+++++ LS ++ + F+ I +G ++I F F + + +R+ Sbjct: 1 MIRSELIQTLANDNPELSSEEIEHIIDVFFDGITHHLAKGGRVEIRGFGAFSTRFRDARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T ++V+++ +RV FK +++ + ++ Sbjct: 61 GRNPRTGEKVEVEAKRVPYFKPGKEIREHLNIEI 94 >gi|258544425|ref|ZP_05704659.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826] gi|258520314|gb|EEV89173.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826] Length = 103 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+ +++ + + + + + ++ +G+ + + F TF +++ +R G Sbjct: 1 MNKTELVDAIAAAADITKVQAGKALEAVLESVTETLKKGDKVTLIGFGTFETRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E++I FKA LK + Sbjct: 61 RNPQTGKEIQIAASITPAFKAGKKLKDALN 90 >gi|220903373|ref|YP_002478685.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867672|gb|ACL48007.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 91 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++LV+ I + GL ++ + + + + ++ GE++ + F +F V ++ +R Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALAAGESVTFTGFGSFKVVERAARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T E+ I +V F LK I Sbjct: 61 GRNPRTGMEITIPASKVAKFTPGKGLKDAIK 91 >gi|224370126|ref|YP_002604290.1| Hbp [Desulfobacterium autotrophicum HRM2] gi|223692843|gb|ACN16126.1| Hbp [Desulfobacterium autotrophicum HRM2] Length = 89 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +S+ S+KD+ V + + ++ E++ + F TF ++ +R G Sbjct: 1 MNKGDLINKVSEVLN-SKKDAQTAVDCILATVTEALAEKESVTLVGFGTFKTAERKARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT E+ I R V F LK + Sbjct: 60 RNPQTGNEIDIPARFVPKFIPGKALKDAVK 89 >gi|268609408|ref|ZP_06143135.1| nucleoid protein Hbs [Ruminococcus flavefaciens FD-1] Length = 91 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ SI+ + ++KD+ + I ++ G+ + I+ F TF V+++G + Sbjct: 1 MTKTELINSIADKANCTKKDAASALEATLAAIQEALENGDKVSITGFGTFEVRERGEKTC 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T ++ P + FKA LK+ + Sbjct: 61 INPKTKAKMVCPPCKAPAFKAGRGLKEAVNK 91 >gi|227820609|ref|YP_002824579.1| integration host factor subunit beta [Sinorhizobium fredii NGR234] gi|227339608|gb|ACP23826.1| integration host factor, beta subunit [Sinorhizobium fredii NGR234] Length = 125 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV+ ++ L +D V + +EI D+ G +++ F F VK + SR Sbjct: 26 VIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 85 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 GRN +T V ++ + V FK L++R+ M R Sbjct: 86 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDR 122 >gi|240136832|ref|YP_002961299.1| integration host factor (IHF), beta subunit, site-specific recombination [Methylobacterium extorquens AM1] gi|240006796|gb|ACS38022.1| integration host factor (IHF), beta subunit, site-specific recombination [Methylobacterium extorquens AM1] Length = 102 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ +G+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 GRN +T + V + + + VFK ++ R+ G + Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRLNRAGIGDEQPS 101 >gi|163849633|ref|YP_001637676.1| integration host factor, beta subunit [Methylobacterium extorquens PA1] gi|218528183|ref|YP_002418999.1| integration host factor subunit beta [Methylobacterium chloromethanicum CM4] gi|254558707|ref|YP_003065802.1| integration host factor [Methylobacterium extorquens DM4] gi|163661238|gb|ABY28605.1| integration host factor, beta subunit [Methylobacterium extorquens PA1] gi|218520486|gb|ACK81071.1| integration host factor, beta subunit [Methylobacterium chloromethanicum CM4] gi|254265985|emb|CAX21735.1| integration host factor (IHF), beta subunit, site-specific recombination [Methylobacterium extorquens DM4] Length = 102 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ +G+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T + V + + + VFK ++ R+ G + Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRLNRAGIGDEQP 100 >gi|332534858|ref|ZP_08410681.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis ANT/505] gi|332035718|gb|EGI72206.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis ANT/505] Length = 89 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+++ L++KDS +++L I S G+ ++I+ F TF + +R G Sbjct: 1 MNKAELVAAIAQKSELTKKDSQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT ++I+ VFK + LK + Sbjct: 61 RNPQTGAAIEIEGANKAVFKPAKALKDLL 89 >gi|154502285|ref|ZP_02039345.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC 29149] gi|153797164|gb|EDN79584.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC 29149] Length = 92 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+K+I+++ G++++ + V + I D+ G+ ++ F +F V+++ R Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN Q E+ I+P + V FKA LK ++ Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91 >gi|327399206|ref|YP_004340075.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] gi|327181835|gb|AEA34016.1| histone family protein DNA-binding protein [Hippea maritima DSM 10411] Length = 91 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L++ ++++ G ++ + + + I D+ GE + + F TF+V ++ +R+G Sbjct: 1 MTKAELIEKVAEKTGATKSQTKKVIDAALETIMDAVAAGEKVGFAGFGTFYVSKRSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++++I+ + FK I K+++ Sbjct: 61 RNPRTGEKLQIEAFNLPSFKCGRIFKEKVNK 91 >gi|303327861|ref|ZP_07358301.1| integration host factor, beta subunit [Desulfovibrio sp. 3_1_syn3] gi|302862222|gb|EFL85156.1| integration host factor, beta subunit [Desulfovibrio sp. 3_1_syn3] Length = 91 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++++E + D++ V T + + S + GE I+I F +F +K+ G G Sbjct: 1 MNKSELIKALAEETNIPFDDASLVVNTFIDAMKKSLIAGERIEIRGFGSFKIKEYGGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V + P+R+ F+A LK+ I Sbjct: 61 RNPKTGESVSVIPKRLPFFRAGKELKEFINQ 91 >gi|289643158|ref|ZP_06475287.1| histone family protein DNA-binding protein [Frankia symbiont of Datisca glomerata] gi|289507050|gb|EFD28020.1| histone family protein DNA-binding protein [Frankia symbiont of Datisca glomerata] Length = 98 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I+++ R ++T+ V +F+ I ++ GE + I+ F F ++ +R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVSAGEKVTITGFGVFERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + V + V F+ S K + Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKASV 89 >gi|261868287|ref|YP_003256209.1| integration host factor subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390072|ref|ZP_06634406.1| integration host factor, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413619|gb|ACX82990.1| integration host factor, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950606|gb|EFE00725.1| integration host factor, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 95 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ + K V + ++ GE I++ F +F + + R+ Sbjct: 1 MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLEHGERIEVRGFGSFSLHCRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90 >gi|308050479|ref|YP_003914045.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] gi|307632669|gb|ADN76971.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] Length = 96 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T++DL + L D+ V T F EI + +GE +K+S F FH++ K R Sbjct: 2 SLTKADLTAHLVDHLHLKVTDAKVLVDTFFEEIRHTLEKGEEVKLSGFGVFHLRDKNPRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E +I RRVV F A LK R+ Sbjct: 62 GRNPKTGEEHEITARRVVTFAAGGKLKGRVA 92 >gi|251792147|ref|YP_003006867.1| integration host factor subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533534|gb|ACS96780.1| integration host factor, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 94 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ + K V + ++ GE I++ F +F + + R+ Sbjct: 1 MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK++ + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLEAKCVPYFKAGKELRERV 90 >gi|261855928|ref|YP_003263211.1| integration host factor subunit beta [Halothiobacillus neapolitanus c2] gi|261836397|gb|ACX96164.1| integration host factor, beta subunit [Halothiobacillus neapolitanus c2] Length = 101 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ LS +D V + +E+ S RG+ I+I F +F + + R+ Sbjct: 1 MTKSELIDRLADRQKYLSIRDIDTSVKLMLDEMISSMSRGDRIEIRGFGSFSLNYRKPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN ++ + V +D + V FK L++R+ + Sbjct: 61 GRNPKSGESVALDSKYVPHFKPGKELRERVNE 92 >gi|260913658|ref|ZP_05920134.1| integration host factor subunit beta [Pasteurella dagmatis ATCC 43325] gi|260632197|gb|EEX50372.1| integration host factor subunit beta [Pasteurella dagmatis ATCC 43325] Length = 94 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ +S KD V + +++ + G+ I++ F +F + + R+ Sbjct: 1 MTKSELIERLVQKHPSISAKDVENSVKEILDQMSFALENGKRIEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90 >gi|162447729|ref|YP_001620861.1| DNA binding protein [Acholeplasma laidlawii PG-8A] gi|161985836|gb|ABX81485.1| DNA binding protein, histone-like protein [Acholeplasma laidlawii PG-8A] Length = 90 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++ + +++ + + V + + + ++ + E + ++ F TF V+ + +R G Sbjct: 1 MNKTELVALVADKAEVTQAMAEKVVNSFVDVVTETLSKDEKVVVTGFGTFEVRNRVARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N +T +E+ + ++ FKA +LK + Sbjct: 61 KNPRTGEEIIVPAQKTPAFKAGKLLKDAVK 90 >gi|21672326|ref|NP_660393.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008343|sp|Q8KA69|DBH_BUCAP RecName: Full=DNA-binding protein HU gi|21622927|gb|AAM67604.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 90 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+K ISK+ LS+ + + + I +S +GE+++I F TF V + SR G Sbjct: 1 MNKTQLIKIISKQSNLSKIQIKSTLEKILSAIIESLKKGESVQIVGFGTFKVNSRASRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+ I +V F + LK I Sbjct: 61 RNPQTGKEIIIPATKVPSFISGKTLKNAIK 90 >gi|312194920|ref|YP_004014981.1| histone family protein DNA-binding protein [Frankia sp. EuI1c] gi|311226256|gb|ADP79111.1| histone family protein DNA-binding protein [Frankia sp. EuI1c] Length = 93 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I+++ R ++T+ V +F+ I ++ GE + I+ F F ++ R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFHAIQEAVSAGEKVTITGFGVFERVERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T + V + V F+ S K + + Sbjct: 61 RNPATGEPVHVPASVVPKFRPGSEFKSSVSSN 92 >gi|302668930|ref|YP_003832755.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] gi|302397270|gb|ADL36173.1| DNA-binding protein [Butyrivibrio proteoclasticus B316] Length = 92 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++K GLS+KD+ + + L + + +++ F TF ++ +R G Sbjct: 1 MNKTELIDAMAKATGLSKKDAGKALDALTGTVSKELKKKGKVQLVGFGTFETVKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT +KI FKA LK + Sbjct: 61 KNPQTGAAIKIPASIAPKFKAGKALKDAVNK 91 >gi|312114064|ref|YP_004011660.1| integration host factor, subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311219193|gb|ADP70561.1| integration host factor, alpha subunit [Rhodomicrobium vannielii ATCC 17100] Length = 233 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 65/97 (67%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GL R ++ V + +I + RGE IK+SSF +F ++QK Sbjct: 5 GKTLTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSE 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V I PRRV+VFKAS+I+K RI + Sbjct: 65 RVGRNPKTGEIVPITPRRVIVFKASNIMKDRINAGLA 101 >gi|86742300|ref|YP_482700.1| histone-like DNA-binding protein [Frankia sp. CcI3] gi|86569162|gb|ABD12971.1| histone-like DNA-binding protein [Frankia sp. CcI3] Length = 94 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I+++ R ++T+ V +F+ I ++ GE + I+ F F ++ +R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + V + V F+ S K + Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >gi|262372481|ref|ZP_06065760.1| integration host factor, beta subunit [Acinetobacter junii SH205] gi|262312506|gb|EEY93591.1| integration host factor, beta subunit [Acinetobacter junii SH205] Length = 100 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ G+ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEDAVKIMIDQMIEALSSGDRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+GRN +T + V + + V FK L+ + + ++ Sbjct: 63 PRLGRNPKTGKAVDVAAKAVPHFKPGKALRDAVNESIK 100 >gi|111225184|ref|YP_715978.1| DNA-binding protein HU-beta, NS1 (HU-1) [Frankia alni ACN14a] gi|111152716|emb|CAJ64459.1| DNA-binding protein HU-beta, NS1 (HU-1) [Frankia alni ACN14a] Length = 94 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I+++ R ++T+ V +F+ I ++ GE + I+ F F ++ +R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + V + V F+ S K + Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >gi|115380144|ref|ZP_01467177.1| integration host factor, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|310823549|ref|YP_003955907.1| integration host factor subunit beta [Stigmatella aurantiaca DW4/3-1] gi|115362849|gb|EAU62051.1| integration host factor, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|309396621|gb|ADO74080.1| Integration host factor, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 113 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + V T+F + ++ RGE I+I FHVK G Sbjct: 1 MLKSDLINILVTKRGVTQKQAEATVETIFESMKEALCRGENIEIRGLGAFHVKNYQGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN +T Q + + P+R ++F+ L+ R+ + + D++ PS Sbjct: 61 RNPKTGQVIPVKPKRGLLFRTGKELRDRVN--RPAAQSAQPDLSDPS 105 >gi|114776643|ref|ZP_01451686.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] gi|114552729|gb|EAU55160.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1] Length = 102 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 40/92 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ GLS+ + V I + G + + F F V + +R Sbjct: 1 MNKTNLINHVASSAGLSKSAAGDAVEAAIGGIINVLSDGGTVSLVGFGRFSVIARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + +++ +FK S LK + Sbjct: 61 RNPRTGETIEVAASNAPIFKPSKALKDAVKQG 92 >gi|46580273|ref|YP_011081.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|120602345|ref|YP_966745.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46449690|gb|AAS96340.1| DNA-binding protein HU, beta subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120562574|gb|ABM28318.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311233745|gb|ADP86599.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 93 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 56/91 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++S+E + +++T V T + + DS + G+ ++I F +F +K G G Sbjct: 1 MNKSELIRTLSEETNIPIEEATIVVNTFIDNMKDSLLAGDRVEIRGFGSFKIKDYGGYSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V ++P+R+ F+A LK+ + + Sbjct: 61 RNPKTGKMVDVEPKRLPFFRAGKELKEFLNE 91 >gi|119489368|ref|ZP_01622148.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] gi|119454641|gb|EAW35787.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] Length = 98 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 52/97 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++++ +++K + +T + + ++ R + + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAERASVTKKQADAVLTAALDTVMEAVSRNDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +T +++ I RV F A + K+++ ++ Sbjct: 61 RNPKTGEKMDIPATRVPAFSAGKLFKEKVASKATTKE 97 >gi|220922182|ref|YP_002497483.1| integration host factor subunit beta [Methylobacterium nodulans ORS 2060] gi|219946788|gb|ACL57180.1| integration host factor, beta subunit [Methylobacterium nodulans ORS 2060] Length = 106 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ RG+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVENIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T V + + + VFK ++ R+ G + + Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRLNAAGIGSEAREP 102 >gi|145630846|ref|ZP_01786623.1| integration host factor beta-subunit [Haemophilus influenzae R3021] gi|145639202|ref|ZP_01794809.1| integration host factor beta-subunit [Haemophilus influenzae PittII] gi|229845052|ref|ZP_04465188.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae 6P18H1] gi|229846876|ref|ZP_04466983.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae 7P49H1] gi|260582649|ref|ZP_05850438.1| integration host factor, beta subunit [Haemophilus influenzae NT127] gi|144983506|gb|EDJ90974.1| integration host factor beta-subunit [Haemophilus influenzae R3021] gi|145271764|gb|EDK11674.1| integration host factor beta-subunit [Haemophilus influenzae PittII] gi|229810365|gb|EEP46084.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae 7P49H1] gi|229812024|gb|EEP47717.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae 6P18H1] gi|260094321|gb|EEW78220.1| integration host factor, beta subunit [Haemophilus influenzae NT127] gi|309750778|gb|ADO80762.1| Integration host factor, beta-subunit [Haemophilus influenzae R2866] Length = 94 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +K+ L K+ V + I S G+ ++I F +F + + R+ Sbjct: 1 MTKSELIEKLLAKQPTLPAKEIENMVKDILEFISQSLENGDRVEIRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|116748869|ref|YP_845556.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116697933|gb|ABK17121.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 90 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV ++ G+++ + + + L + + +G+ I + F TF V ++ R G Sbjct: 1 MTKADLVIKMADGTGITKAAAEKALNNLIAAVSAALAKGDKITLVGFGTFDVAKRAKREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T Q + I +VV FKA + L+ I Sbjct: 61 RNPRTGQAITIPASKVVRFKAGNKLRDAIK 90 >gi|238022457|ref|ZP_04602883.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC 51147] gi|237867071|gb|EEP68113.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC 51147] Length = 102 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 5 ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ +++ L KD V L + + S +G+ I+I F +F + Sbjct: 1 MTKSELMARLAELFIENNEGTELQAKDIEYGVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 + RVGRN +T + V++ +RV FK L++R+ Sbjct: 61 YRPPRVGRNPKTGERVEVPAKRVPHFKPGKELRERVDQAFAA 102 >gi|95929490|ref|ZP_01312233.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95134606|gb|EAT16262.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 94 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L++ + + L++K+S V T+F+ I + + G+ ++I F +F ++++ +R Sbjct: 1 MTKSQLIERLMESTSDLNKKESELVVNTIFDSIGSALIGGDRVEIRGFGSFSIREREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN ++ + I ++ FK L++R+ Sbjct: 61 ARNPKSGNLINIPSKKTPFFKTGKELRERV 90 >gi|94987336|ref|YP_595269.1| nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] gi|94731585|emb|CAJ54948.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] Length = 91 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVKS+S++ +S ++T V T + + +S ++G +++ F +F VK+ G Sbjct: 1 MNKSELVKSLSEQANISLDEATLVVNTFVDSMKESLLKGGRVEVRGFGSFKVKEYEGYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++V + P+R+ F+A LK+ + Sbjct: 61 RNPRTGEKVVVQPKRLPFFRAGKELKEYLN 90 >gi|297617754|ref|YP_003702913.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145591|gb|ADI02348.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 112 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 56/100 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVKS++++ G+++K++ + + I ++ G+ ++I F TF V+ + +R Sbjct: 1 MNKAELVKSLAEKAGVTQKEAGKVLDAAVASIQEALAGGDKVQIIGFGTFEVRNRRARKV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 + T +E+++ RV FK LK+ ++ +K K Sbjct: 61 ISPATGEEIEVPATRVPAFKPGKSLKEAVVIKEEPKKTGK 100 >gi|209695658|ref|YP_002263587.1| integration host factor subunit beta [Aliivibrio salmonicida LFI1238] gi|226709768|sp|B6EIY1|IHFB_ALISL RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|208009610|emb|CAQ79906.1| integration host factor beta-subunit [Aliivibrio salmonicida LFI1238] Length = 93 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + SK+ LS K V + ++ + G+ I+I F +F + + R+ Sbjct: 1 MTKSELIEQLCSKKPQLSAKQVEDTVKEVLEQMATTLEGGDRIEIRGFGSFSLHYREPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++D + V FK L++R+ Sbjct: 61 GRNPKTGDKVELDGKFVPHFKPGKELRERVN 91 >gi|312113689|ref|YP_004011285.1| integration host factor subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311218818|gb|ADP70186.1| integration host factor, beta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 110 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ ++ L +D + V +F EI + +G+ +++ F F VK + +RV Sbjct: 1 MIKSELIEKLAATNPHLMHRDVEKIVNVIFEEITGALTKGDRVELRGFGAFSVKHRPARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V + + V FK L+ R+ Sbjct: 61 GRNPRTGDQVSVPEKFVPYFKTGKELRIRLN 91 >gi|90406779|ref|ZP_01214971.1| putative integration host factor, beta subunit [Psychromonas sp. CNPT3] gi|90312016|gb|EAS40109.1| putative integration host factor, beta subunit [Psychromonas sp. CNPT3] Length = 95 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ ++ + F LS ++ V + +S +GE I++ F +F + + R+ Sbjct: 1 MTKSDLIEKLTNKHFQLSVREVEDSVKETLQLMTNSLAQGERIEVRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V++ + V FK L++R+ Sbjct: 61 GRNPKTGDKVELGGKYVPHFKPGKELRERVN 91 >gi|292905267|ref|YP_003541138.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413] gi|75705005|gb|ABA24680.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413] Length = 97 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ + +S+K + + + I ++ G + + F +F + + R G Sbjct: 1 MNKAELIQAVAAKANVSQKQAETVLNATTDTIVETVANGGKVILVGFGSFEARARKEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +TN+++ I V F K + Sbjct: 61 RNPKTNEKMIIPATTVPAFSPGKHFKTEV 89 >gi|317476442|ref|ZP_07935691.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316907468|gb|EFV29173.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 88 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ RVG Sbjct: 1 MNKSELISAMAAEAGLSKADSKRALDAFIASVTTALKAGDKVALVGFGTFSVTERAGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++V F+A S L Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85 >gi|103486981|ref|YP_616542.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] gi|98977058|gb|ABF53209.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] Length = 92 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I+ + L ++ R V T F+ I D G +++ F F + + SR Sbjct: 1 MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V++ ++V FK +++R+ Sbjct: 61 GRNPRTGAAVEVKAKKVPYFKPGKEMRERLN 91 >gi|309792618|ref|ZP_07687079.1| histone family protein DNA-binding protein [Oscillochloris trichoides DG6] gi|308225340|gb|EFO79107.1| histone family protein DNA-binding protein [Oscillochloris trichoides DG6] Length = 91 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K+++++ G+S+K++ V + + I ++ RGE + ++ F TF V+ + +R G Sbjct: 1 MQKTDFIKAVAEKAGVSQKETKLVVDSALDVITEALARGEKVTLTGFGTFEVRSRRAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT ++ I + F ASS LK + Sbjct: 61 VNPQTRDKIHIPETKTPGFSASSTLKDAVKG 91 >gi|256545177|ref|ZP_05472543.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170] gi|256399218|gb|EEU12829.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170] Length = 93 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS++ GL + ++ R + + +S + E +++ F TF + + +R G Sbjct: 1 MNKSELLVNISEKSGLKKVEAERALNAFIETVTESLKKEEKVQLVGFGTFETRDRKAREG 60 Query: 65 RNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95 RN + + +KI + VFKA LK+ + + Sbjct: 61 RNPRKPDEVIKIPASKAPVFKAGKTLKEAVNN 92 >gi|170748862|ref|YP_001755122.1| integration host factor, beta subunit [Methylobacterium radiotolerans JCM 2831] gi|170655384|gb|ACB24439.1| integration host factor, beta subunit [Methylobacterium radiotolerans JCM 2831] Length = 103 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ RG+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T V + + + VFK +++R+ G + Sbjct: 61 GRNPRTGAAVAVSEKAIPVFKTGKEMRQRLNAAGIGENAS 100 >gi|325266870|ref|ZP_08133541.1| integration host factor subunit alpha [Kingella denitrificans ATCC 33394] gi|324981611|gb|EGC17252.1| integration host factor subunit alpha [Kingella denitrificans ATCC 33394] Length = 102 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+++L + ++ +S+ ++ V F EI RGE IKIS F F ++ K R Sbjct: 2 TLTKAELADILVEKVSSVSKTEAKEIVELFFEEIRSVLARGEEIKISGFGNFQLRNKPER 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T +EV I RRVV F AS LK + K Sbjct: 62 PGRNPKTGKEVAISARRVVTFHASQKLKGMVEHHSEANKAR 102 >gi|218779503|ref|YP_002430821.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218760887|gb|ACL03353.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 97 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 48/96 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ +V+ I + GL K V L I S G+ + IS F F V+ K R Sbjct: 2 ALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 GRN T + +D R+VV F S +L+ RI + +G Sbjct: 62 GRNPATGDSIILDARKVVTFTCSGVLRDRINSNEKG 97 >gi|148284257|ref|YP_001248347.1| histone-like DNA-binding protein HU [Orientia tsutsugamushi str. Boryong] gi|146739696|emb|CAM79506.1| histone-like DNA-binding protein HU [Orientia tsutsugamushi str. Boryong] Length = 125 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +++ V I K +++ D R + + + + G I I F +F V+ + + Sbjct: 32 EALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAA 91 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R G N +T ++ I VVFK LK + Sbjct: 92 RDGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 125 >gi|320451084|ref|YP_004203180.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01] gi|320151253|gb|ADW22631.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01] Length = 97 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 51/93 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV ++ GL +KD V +++ ++ G ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVDQVAAATGLKKKDVKAAVDAFLSKVEEALASGNKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G T +++KI + FK LK+++ Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKEKVKK 97 >gi|319936472|ref|ZP_08010888.1| DNA-binding protein HU [Coprobacillus sp. 29_1] gi|319808587|gb|EFW05139.1| DNA-binding protein HU [Coprobacillus sp. 29_1] Length = 90 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +S++ L++KD+ V T+F+ + +S + G+ + IS F TF V + R G Sbjct: 1 MNKKELIDIVSQKKDLTKKDAEALVDTVFDTMIESILEGDKVLISGFGTFKVNSRKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + +T + + I + V FK S+ LK + Sbjct: 61 VSPKTKEMMIIPASKTVSFKPSNRLKDAMN 90 >gi|34539986|ref|NP_904465.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188994099|ref|YP_001928351.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] gi|34396297|gb|AAQ65364.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188593779|dbj|BAG32754.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] Length = 88 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D + +++++ L++ D+ R V + + GE I + F TF V ++ +R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T + + I R+VV FK S L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >gi|113475301|ref|YP_721362.1| nucleoid protein Hbs [Trichodesmium erythraeum IMS101] gi|110166349|gb|ABG50889.1| bacterial nucleoid protein Hbs [Trichodesmium erythraeum IMS101] Length = 95 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ISK+ +++K + ++ I D+ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDEISKKAEVTKKQADAVLSAALEAIMDAVASGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +++I V F A K+ + + Sbjct: 61 RNPKTGDKMEIPETTVPAFSAGKSFKELVAE 91 >gi|158339614|ref|YP_001521003.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158309855|gb|ABW31471.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 91 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I++ G ++K + +T L I ++ GE + + F +F + + +R G Sbjct: 1 MNKGELVDVIAENTGATKKQADTILTALTETIMETVSSGEKVILVGFGSFEARDRKARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +++ I + +F A K+++ D Sbjct: 61 RNPRTGKKLTIPATKSPIFSAGKTFKEQVKD 91 >gi|268601568|ref|ZP_06135735.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID18] gi|291043583|ref|ZP_06569299.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2] gi|268585699|gb|EEZ50375.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID18] gi|291012046|gb|EFE04035.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2] Length = 98 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 5 ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|225075202|ref|ZP_03718401.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens NRL30031/H210] gi|241758896|ref|ZP_04757009.1| integration host factor, beta subunit [Neisseria flavescens SK114] gi|261380193|ref|ZP_05984766.1| integration host factor, beta subunit [Neisseria subflava NJ9703] gi|319638404|ref|ZP_07993166.1| integration host factor subunit beta [Neisseria mucosa C102] gi|224953377|gb|EEG34586.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens NRL30031/H210] gi|241321104|gb|EER57317.1| integration host factor, beta subunit [Neisseria flavescens SK114] gi|284797040|gb|EFC52387.1| integration host factor, beta subunit [Neisseria subflava NJ9703] gi|317400153|gb|EFV80812.1| integration host factor subunit beta [Neisseria mucosa C102] Length = 104 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDL----VKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L + +++ G L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|218437716|ref|YP_002376045.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7424] gi|307150941|ref|YP_003886325.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7822] gi|218170444|gb|ACK69177.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7424] gi|306981169|gb|ADN13050.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 7822] Length = 91 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I+ +++K + +T I D+ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDEIASRAMVTKKQADAVLTAAIEAIMDAVSSGDKVTLVGFGSFEARERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++ I +V F A + K+++ Sbjct: 61 RNPKTGEKMVIPETKVPAFSAGKLFKEKV 89 >gi|259908918|ref|YP_002649274.1| integration host factor subunit beta [Erwinia pyrifoliae Ep1/96] gi|224964540|emb|CAX56050.1| Integration host factor beta-subunit (IHF-beta) [Erwinia pyrifoliae Ep1/96] gi|283478914|emb|CAY74830.1| Integration host factor beta-subunit (IHF-beta) [Erwinia pyrifoliae DSM 12163] Length = 95 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I++ F +F + + R Sbjct: 1 MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +V+++ + V FK L+ R Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91 >gi|119469331|ref|ZP_01612270.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium TW-7] gi|119447195|gb|EAW28464.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium TW-7] Length = 89 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++K L++KDS +T++ I S G+ ++I+ F TF + +R G Sbjct: 1 MNKTQLIAEMAKHSELTKKDSQAALTSIQKVITKSLSEGDQVQINGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I+ VFK + LK R+ Sbjct: 61 RNPQTGETIEIEGANKAVFKPAKALKDRL 89 >gi|300023466|ref|YP_003756077.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525287|gb|ADJ23756.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 90 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ DL+ +++++ L+++ ++ V + I ++ G ++I F TF V + +R G Sbjct: 1 MSKKDLIDAVARDCELTKEKASGVVDAVLAHIREAMKEGHEVRIPDFGTFKVAARKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T ++I RV F + LK + Sbjct: 61 RNPATGMTIQIPASRVPKFTPAKGLKDALN 90 >gi|291287359|ref|YP_003504175.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290884519|gb|ADD68219.1| histone family protein DNA-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 94 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ IS + L++K V +F+ I D+ G+ ++I F +F +++K S+V Sbjct: 1 MTKSELIEVISTQNQELTKKQVEFIVNGVFSSIKDALKTGDKVEIRGFGSFKIREKNSKV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T +V++ + V FK +K+ ++ Sbjct: 61 GRNPKTGDKVEVPSKNVPYFKPGKEIKELLIQA 93 >gi|224826390|ref|ZP_03699492.1| integration host factor, beta subunit [Lutiella nitroferrum 2002] gi|224601491|gb|EEG07672.1| integration host factor, beta subunit [Lutiella nitroferrum 2002] Length = 104 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISK-----EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+S+L+ +++ L KD+ V T+ + + S G+ I+I F +F + + Sbjct: 1 MTKSELIARLAEHLAERNSQLVYKDAELAVKTILDAMAGSLATGQRIEIRGFGSFDLNYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN ++ V + + V FKA L++R+ Sbjct: 61 PPRVGRNPKSGSSVSVPEKFVPHFKAGKELRERV 94 >gi|158338987|ref|YP_001520164.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158309228|gb|ABW30845.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 93 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++ + +++K + +T I +S GE + + F +F +++ +R G Sbjct: 1 MNKGELVDAVADKASVTKKQADAVLTAALEAIVESVSSGEKVTLVGFGSFEPRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++KI +V F A + K+++ Sbjct: 61 RNPKTGAKMKIPATKVPAFSAGKLFKEKVA 90 >gi|160884102|ref|ZP_02065105.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483] gi|237717231|ref|ZP_04547712.1| DNA-binding protein HU-beta [Bacteroides sp. D1] gi|237718986|ref|ZP_04549467.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4] gi|260173110|ref|ZP_05759522.1| DNA-binding protein HU-beta [Bacteroides sp. D2] gi|262405998|ref|ZP_06082548.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|293368714|ref|ZP_06615319.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|294647974|ref|ZP_06725525.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294806912|ref|ZP_06765737.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|298480088|ref|ZP_06998287.1| DNA-binding protein HU [Bacteroides sp. D22] gi|299144759|ref|ZP_07037827.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|315921386|ref|ZP_07917626.1| DNA-binding protein HU-beta [Bacteroides sp. D2] gi|156110444|gb|EDO12189.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483] gi|229443214|gb|EEO49005.1| DNA-binding protein HU-beta [Bacteroides sp. D1] gi|229451764|gb|EEO57555.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4] gi|262356873|gb|EEZ05963.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|292636179|gb|EFF54666.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292636690|gb|EFF55157.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294445941|gb|EFG14583.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|295085555|emb|CBK67078.1| bacterial nucleoid protein Hbs [Bacteroides xylanisolvens XB1A] gi|298273897|gb|EFI15459.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298515250|gb|EFI39131.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|313695261|gb|EFS32096.1| DNA-binding protein HU-beta [Bacteroides sp. D2] Length = 90 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ +++ E +S+ D+ + + + ++ G+ + + F TF V ++ R G Sbjct: 1 MNKSDLISAMAAEAQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + I ++V FKA + L + Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAVE 90 >gi|156740686|ref|YP_001430815.1| histone family protein DNA-binding protein [Roseiflexus castenholzii DSM 13941] gi|156232014|gb|ABU56797.1| histone family protein DNA-binding protein [Roseiflexus castenholzii DSM 13941] Length = 92 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ S+K++ V I ++ RGE + ++ F TF V+Q+ +R G Sbjct: 1 MQKTDFIKAVAERANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N QT ++ I R F ASS LK + + Sbjct: 61 VNPQTRSKIHIPATRTPGFSASSTLKNAVKEG 92 >gi|206973313|ref|ZP_03234235.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] gi|206732197|gb|EDZ49397.1| DNA-binding protein HU 1 [Bacillus cereus AH1134] Length = 93 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 54/92 (58%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + I +++L K ++++ L +KD T+ + I ++ GE ++I SF TF V+++ +R Sbjct: 2 QKINKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILSFCTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT ++++I + FKA LK+ + Sbjct: 62 TGRNPQTGKKMQIAASKAPAFKAGKELKEAVK 93 >gi|332288957|ref|YP_004419809.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis UMN179] gi|330431853|gb|AEC16912.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis UMN179] Length = 90 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I+++ LS+KDS + I +S G+A+++ F TF V Q+ R G Sbjct: 1 MNKTELVDVIAEKTKLSKKDSKAALEAALEAITESLKAGDAVQLIGFGTFKVNQRQERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +V F + LK + Sbjct: 61 RNPQTGKEIKIPATKVPAFVSGKALKDAVK 90 >gi|302344119|ref|YP_003808648.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301640732|gb|ADK86054.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 92 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+++++K L+ K + V TLF I ++ V+G+ ++I F +F VK G Sbjct: 1 MNKSQLIEALAKAENLTIKKAEMVVNTLFGAIEEALVQGDRVEIRGFGSFKVKNYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +++ +++ FK LK R+ Sbjct: 61 RNPKTGEIIQVGQKKLPFFKVGKELKDRV 89 >gi|117925344|ref|YP_865961.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117926106|ref|YP_866723.1| nucleoid protein Hbs [Magnetococcus sp. MC-1] gi|117609100|gb|ABK44555.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609862|gb|ABK45317.1| bacterial nucleoid protein Hbs [Magnetococcus sp. MC-1] Length = 91 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++L K++++ GLS+ ++ + + F + D+ G+ + IS F F + ++ +R G Sbjct: 1 MNLTELKKAVAESSGLSQANADKAIKATFAAMTDALKGGDGVSISGFGAFQIDERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T QE+KI + V FKA +LK + Sbjct: 61 RNPKTGQEIKIAASKNVKFKAGKVLKDAVNG 91 >gi|158523217|ref|YP_001531087.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158512043|gb|ABW69010.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 91 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++ + G+S+ ++ + V T F+ + D+ GE +++ +F VK+ S G Sbjct: 1 MNKLELVTALKDKTGVSKVEAAKIVKTFFDTMADTLATGERVEVRGLCSFFVKEYKSYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++V I P+++ FK LK+RI Sbjct: 61 RNPKTGEKVTIAPKKLPFFKCGKELKERING 91 >gi|325663704|ref|ZP_08152108.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA] gi|331087225|ref|ZP_08336295.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470197|gb|EGC73430.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA] gi|330408911|gb|EGG88372.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA] Length = 91 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ +S+KDS + + + + + +GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIAAVAEAAEVSKKDSEKVLKAFVDVVTEELKKGEKVQLVGFGTFEVTERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + + I + FKA LK + Sbjct: 61 RNPHTKETMMIAACKAPKFKAGKALKDAVN 90 >gi|197103657|ref|YP_002129034.1| integration host factor beta subunit [Phenylobacterium zucineum HLK1] gi|196477077|gb|ACG76605.1| integration host factor beta subunit [Phenylobacterium zucineum HLK1] Length = 120 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ +++E L+++D R V + + ++ G +++ F V+ + +R Sbjct: 25 MIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSRDARA 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + + V FK+ L++R+ Sbjct: 85 GRNPRTGEPVDVRAKHVPFFKSGKELRERLN 115 >gi|237733822|ref|ZP_04564303.1| DNA-binding protein HU [Mollicutes bacterium D7] gi|229383160|gb|EEO33251.1| DNA-binding protein HU [Coprobacillus sp. D7] Length = 90 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+++SKE L++KD+ V T+FN I S V G+ + IS F TF V + +R G Sbjct: 1 MNKKELVETVSKERNLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + +T +E+ I + V FK S+ LK + Sbjct: 61 ISPKTQEEMVIPASKTVTFKPSNRLKDAMN 90 >gi|323136968|ref|ZP_08072048.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397729|gb|EFY00251.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 179 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 1/96 (1%) Query: 2 SKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+TR+ L +++ LSR ++ + + F EI D+ +RGE++K+ SF TF+V+ K Sbjct: 78 GSTLTRAALREAVYGCCPSLSRAEARKILDATFEEISDALLRGESVKLRSFGTFNVRSKR 137 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T E I PRRV+ FKAS +L + D Sbjct: 138 ERVGRNPKTGVEATITPRRVLTFKASPVLVAHVNGD 173 >gi|295099668|emb|CBK88757.1| bacterial nucleoid protein Hbs [Eubacterium cylindroides T2-87] Length = 94 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 50/94 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+ + DL + E+ LS+K + + T+F EI ++ + I F F + ++ Sbjct: 1 MSTTVNKKDLAAKLVAEYDLSKKVAEGCINTVFEEIMNTLKEDGVVDIYGFGKFSLSERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+G N T ++++I + V FKAS LK + Sbjct: 61 ARMGLNPATGEKIEIPASKAVKFKASKSLKDAVK 94 >gi|154248715|ref|YP_001409540.1| histone family protein DNA-binding protein [Fervidobacterium nodosum Rt17-B1] gi|154152651|gb|ABS59883.1| histone family protein DNA-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 91 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV +++++ L +KD V +F I ++ +GE +++ F TF VK+ R G Sbjct: 1 MNKKLLVNAVAEKTQLKKKDVKAVVDAVFETIAEALEKGEKVQLVDFGTFEVKKMAGRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T ++KI R+V F+ +LK ++ Sbjct: 61 VNPRTKSKIKIPSRKVPKFRPGKVLKSKVNK 91 >gi|307298658|ref|ZP_07578461.1| histone family protein DNA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915823|gb|EFN46207.1| histone family protein DNA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 90 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ G ++K + + + + + E +K+ F TF V ++ +R G Sbjct: 1 MNKKELIAVLAEKTGATKKLVGDVIDGFIDVVGEELSKNEEVKLVGFGTFEVTKRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + ++I +V F+ LK+++ Sbjct: 61 VNPRTKEAIEIPGGKVPKFRPGKELKEKVQ 90 >gi|163748941|ref|ZP_02156192.1| integration host factor, beta subunit [Shewanella benthica KT99] gi|161331317|gb|EDQ02205.1| integration host factor, beta subunit [Shewanella benthica KT99] Length = 95 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ LS K+ + + ++ + G I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMAQTLEGGNRIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V++D + V FK L++R+ Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >gi|297587538|ref|ZP_06946182.1| DNA-binding protein HU [Finegoldia magna ATCC 53516] gi|297574227|gb|EFH92947.1| DNA-binding protein HU [Finegoldia magna ATCC 53516] Length = 96 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+K+ LS+ +S R + + ++ +GE +++ F TF +++ +R G Sbjct: 1 MNKSELLTSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 RN + +E ++I VFKA LK+ + Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVNK 92 >gi|307297819|ref|ZP_07577625.1| histone family protein DNA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306917079|gb|EFN47461.1| histone family protein DNA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 90 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I+++ G+++KD+ + + T+ + I + +G+ +++ F TF V + +R G Sbjct: 1 MNKKELIAEIAEKTGVTKKDAGKTLDTVIDIIEKTLSKGDVVRLVGFGTFMVASRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + + I +V F LK+++ Sbjct: 61 VNPRTKKPITIPGGKVPKFVPGKELKEKVK 90 >gi|294789887|ref|ZP_06755113.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453] gi|294482177|gb|EFG29878.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453] Length = 90 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K+I+ E GL++ + + L + D G + I F F+V ++ R+G Sbjct: 1 MNKAELIKTIATESGLTQTQANDALNALCKVVIDELSIGGEVNIVGFGRFYVAERAERMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T++ V I V FKA LK + Sbjct: 61 RNPKTSKPVMIPATCVAKFKAGKTLKDAVA 90 >gi|218131482|ref|ZP_03460286.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM 20697] gi|217986414|gb|EEC52751.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM 20697] Length = 88 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ RVG Sbjct: 1 MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVTERAGRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++V F+A S L Sbjct: 61 INPATKKPIQIPAKKVAKFRAGSEL 85 >gi|329120384|ref|ZP_08249051.1| integration host factor beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327462339|gb|EGF08665.1| integration host factor beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 102 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 5 ITRSDLVKSISK----EFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ ++ + LS KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMARLADVFADKHPLSPLMSKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + +R GRN +T +V + + V FK L++R+ Sbjct: 61 HRPARQGRNPKTGDKVDVPEKHVPHFKPGKELRERVDQS 99 >gi|315499913|ref|YP_004088716.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315417925|gb|ADU14565.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 100 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 60/92 (65%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+TR++L +++ E GL R++ V + + DS +GE +K+S F F V++K + Sbjct: 3 ATTLTRAELFEAVHNELGLPRQECAALVERTLDLVIDSLEKGETVKLSGFGVFQVREKNA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RVGRN +T + IDPR+V+ F+AS I+K R+ Sbjct: 63 RVGRNPKTGKPAAIDPRKVISFRASQIMKARV 94 >gi|37520401|ref|NP_923778.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] gi|35211394|dbj|BAC88773.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] Length = 94 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 53/94 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LVK++++ ++ K++ ++ +F+EI D+ GE + + F TF +++ R G Sbjct: 1 MNKGELVKAVAERTKITLKEADAVISAVFDEIQDTVAGGEKVTLVGFGTFEARKRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +TN+++ I F A K+ ++ + + Sbjct: 61 RNPKTNEKMIIPATVAPAFSAGKTFKEAVLTNNK 94 >gi|323697932|ref|ZP_08109844.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323457864|gb|EGB13729.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 90 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+++ L++ ++ R + + + V + ++ F TF V+ + SRVG Sbjct: 1 MTKAELVVKIAEKANLTKANAERALNAFLETVESTLVSEGKLTLTGFGTFMVELRKSRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+KI +VV F+ ILK + Sbjct: 61 RNPRTGLELKIPETKVVKFRPGKILKDAVK 90 >gi|285017391|ref|YP_003375102.1| DNA-binding protein hu (histone-like protein hu) [Xanthomonas albilineans GPE PC73] gi|283472609|emb|CBA15114.1| probable dna-binding protein hu (histone-like protein hu) [Xanthomonas albilineans] Length = 90 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L +I+ +S+ ++ R V +E+ + +G+++ + F TF V+ + R G Sbjct: 1 MNKAELNDAIAAAADISKAEAGRAVDAFVSEVTKALKKGDSVTLVGFGTFQVRDRAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI + FKA LK + Sbjct: 61 RNPKTGDSIKIAASKNPTFKAGKALKDAVN 90 >gi|159474730|ref|XP_001695478.1| predicted protein [Chlamydomonas reinhardtii] gi|158275961|gb|EDP01736.1| predicted protein [Chlamydomonas reinhardtii] Length = 87 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV++I+ E GL++ + + +L I D+ + G+ + I F TF V+++ +R GRN Sbjct: 1 KAKLVEAIATEVGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGRN 60 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T ++I + VFKAS LK + Sbjct: 61 PSTGAVLQIAASKAPVFKASVGLKDAV 87 >gi|148263534|ref|YP_001230240.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] gi|146397034|gb|ABQ25667.1| histone family protein DNA-binding protein [Geobacter uraniireducens Rf4] Length = 93 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+LV + + G LSRK+S ++ +F+ +C++ GE ++I F +F ++ + +R Sbjct: 1 MTKSELVDKLVEVNGILSRKESEAIISIVFDSMCEALKSGEKVEIRGFGSFTIRDREARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + VKI ++ FK L++R+ + Sbjct: 61 ARNPKSGEIVKIASKKTPFFKTGKELRERVNN 92 >gi|50085437|ref|YP_046947.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter sp. ADP1] gi|49531413|emb|CAG69125.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter sp. ADP1] Length = 101 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ D+ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHHRD 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V++ + V FK L+ + + + Sbjct: 63 PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNEAIN 100 >gi|85709918|ref|ZP_01040983.1| integration host factor beta-subunit [Erythrobacter sp. NAP1] gi|85688628|gb|EAQ28632.1| integration host factor beta-subunit [Erythrobacter sp. NAP1] Length = 93 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ + K L ++ + V F+EI G +++ F F + + +R Sbjct: 1 MIRSELLTELHKDNPELRSEEVEQVVDIFFDEISQRLAEGGRVELRGFGAFSTRDREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ +RV FKA ++ R+ +D Sbjct: 61 GRNPRTGEAVEVPAKRVPYFKAGKEIRNRLNED 93 >gi|294787730|ref|ZP_06752974.1| integration host factor, beta subunit [Simonsiella muelleri ATCC 29453] gi|294484023|gb|EFG31706.1| integration host factor, beta subunit [Simonsiella muelleri ATCC 29453] Length = 101 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 7/96 (7%) Query: 5 ITRSDLVKSISK-------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 +T+S+L+ +++ + L KD V L + + S +G+ I+I F +F + Sbjct: 1 MTKSELMTRLAEVFVEKNSDTELQTKDIEYSVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +RVGRN +T + V++ +RV FK L++R+ Sbjct: 61 DRPARVGRNPKTGERVEVPAKRVPHFKPGKELRERV 96 >gi|153805807|ref|ZP_01958475.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185] gi|149130484|gb|EDM21690.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185] Length = 90 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E +S+ D+ + + + ++ G+ + + F TF V ++ R G Sbjct: 1 MNKSELISAMAAESQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + I ++V FKA + L + Sbjct: 61 INPSTKATITIPAKKVAKFKAGAELSAAVE 90 >gi|114566192|ref|YP_753346.1| non-specific DNA-binding protein HBsu [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337127|gb|ABI67975.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 110 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LVKS++++ +++KD+ + + L I + G+ ++I F +F V+ + R Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 + T +E+ + +V FK L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >gi|254361238|ref|ZP_04977381.1| integration host factor beta subunit [Mannheimia haemolytica PHL213] gi|261492539|ref|ZP_05989092.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495208|ref|ZP_05991670.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|3334237|sp|P95519|IHFB_PASHA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1842239|gb|AAC44846.1| integration host factor Beta subunit [Mannheimia haemolytica] gi|153092734|gb|EDN73777.1| integration host factor beta subunit [Mannheimia haemolytica PHL213] gi|261309133|gb|EEY10374.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311698|gb|EEY12848.1| integration host factor, beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 93 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++S++ + L K V L ++ + GE I++ F +F + + R+ Sbjct: 1 MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V + + V FKA LK+R+ Sbjct: 61 GRNPKTGESVLLGAKYVPHFKAGKDLKERV 90 >gi|27904545|ref|NP_777671.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340030|sp|Q89B22|DBH_BUCBP RecName: Full=DNA-binding protein HU gi|27903942|gb|AAO26776.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 92 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ISK+ LS+ + I S G ++++ F TF V + +R+G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT Q + I + VF + K I Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIK 90 >gi|319762738|ref|YP_004126675.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|317117299|gb|ADU99787.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] Length = 90 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL++ ++ + +S+ + R + + + + +G + + F ++ V ++ +RVG Sbjct: 1 MNKSDLIERMASDADISKAAAERALESFTTAVQTTLKKGGTVALVGFGSWSVTKRAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI R+ F K + Sbjct: 61 RNPKTGEALKIKARKAPKFTPGKAFKDALN 90 >gi|157375434|ref|YP_001474034.1| integration host factor, beta subunit [Shewanella sediminis HAW-EB3] gi|189045046|sp|A8FVN3|IHFB_SHESH RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|157317808|gb|ABV36906.1| integration host factor, beta subunit [Shewanella sediminis HAW-EB3] Length = 95 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ +S K+ + + ++ + G+ I+I F +F + + R Sbjct: 1 MTKSELIEKLATRQSQMSAKEVESAIKEMLEQMAQTLEGGDRIEIRGFGSFSLHFRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V +D + V FK L++R+ Sbjct: 61 GRNPKTGTSVDLDGKYVPHFKPGKELRERV 90 >gi|302878691|ref|YP_003847255.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302581480|gb|ADL55491.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 97 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ +F L+ D V T+ +E+ + RG I+I F +F + + R Sbjct: 1 MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FK L++R+ Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90 >gi|170740732|ref|YP_001769387.1| integration host factor subunit beta [Methylobacterium sp. 4-46] gi|168195006|gb|ACA16953.1| integration host factor, beta subunit [Methylobacterium sp. 4-46] Length = 106 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+LV I+++ L ++D V + + I D+ RG+ +++ F F VK++ +R Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVESIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN +T V + + + VFK ++ R+ G + + Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRLNAAGIGAETREP 102 >gi|15677168|ref|NP_274321.1| integration host factor beta-subunit [Neisseria meningitidis MC58] gi|121635014|ref|YP_975259.1| integration host factor beta-subunit [Neisseria meningitidis FAM18] gi|218768324|ref|YP_002342836.1| integration host factor subunit beta [Neisseria meningitidis Z2491] gi|254805103|ref|YP_003083324.1| integration host factor beta-subunit [Neisseria meningitidis alpha14] gi|261400687|ref|ZP_05986812.1| integration host factor, beta subunit [Neisseria lactamica ATCC 23970] gi|268594993|ref|ZP_06129160.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02] gi|268596627|ref|ZP_06130794.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19] gi|268603907|ref|ZP_06138074.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1] gi|268682370|ref|ZP_06149232.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID332] gi|268684528|ref|ZP_06151390.1| integration host factor beta-subunit [Neisseria gonorrhoeae SK-92-679] gi|293398895|ref|ZP_06643060.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62] gi|304387392|ref|ZP_07369584.1| integration host factor beta subunit [Neisseria meningitidis ATCC 13091] gi|313668441|ref|YP_004048725.1| integration host factor beta-subunit [Neisseria lactamica ST-640] gi|60392449|sp|P0A0U1|IHFB_NEIMA RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|60392450|sp|P0A0U2|IHFB_NEIMB RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|60392451|sp|P0A0U3|IHFB_NEIGO RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918555|sp|A1KUD0|IHFB_NEIMF RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|7226542|gb|AAF41677.1| integration host factor, beta subunit [Neisseria meningitidis MC58] gi|9965584|gb|AAG10095.1| IfhA [Neisseria gonorrhoeae] gi|120866720|emb|CAM10473.1| integration host factor beta-subunit [Neisseria meningitidis FAM18] gi|121052332|emb|CAM08663.1| integration host factor beta-subunit [Neisseria meningitidis Z2491] gi|254668645|emb|CBA06291.1| integration host factor beta-subunit [Neisseria meningitidis alpha14] gi|254670493|emb|CBA06219.1| integration host factor beta-subunit [Neisseria meningitidis alpha153] gi|254673141|emb|CBA07940.1| integration host factor beta-subunit [Neisseria meningitidis alpha275] gi|261392417|emb|CAX49959.1| integration host factor beta-subunit (IHF-beta) [Neisseria meningitidis 8013] gi|268548382|gb|EEZ43800.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02] gi|268550415|gb|EEZ45434.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19] gi|268588038|gb|EEZ52714.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1] gi|268622654|gb|EEZ55054.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID332] gi|268624812|gb|EEZ57212.1| integration host factor beta-subunit [Neisseria gonorrhoeae SK-92-679] gi|269209603|gb|EEZ76058.1| integration host factor, beta subunit [Neisseria lactamica ATCC 23970] gi|291610309|gb|EFF39419.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62] gi|304338643|gb|EFM04761.1| integration host factor beta subunit [Neisseria meningitidis ATCC 13091] gi|308389422|gb|ADO31742.1| integration host factor beta-subunit [Neisseria meningitidis alpha710] gi|309379233|emb|CBX22190.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313005903|emb|CBN87359.1| integration host factor beta-subunit [Neisseria lactamica 020-06] gi|319410569|emb|CBY90938.1| integration host factor beta-subunit (IHF-beta) [Neisseria meningitidis WUE 2594] gi|325128401|gb|EGC51284.1| integration host factor, beta subunit [Neisseria meningitidis N1568] gi|325130334|gb|EGC53100.1| integration host factor, beta subunit [Neisseria meningitidis OX99.30304] gi|325132497|gb|EGC55190.1| integration host factor, beta subunit [Neisseria meningitidis M6190] gi|325134456|gb|EGC57101.1| integration host factor, beta subunit [Neisseria meningitidis M13399] gi|325136194|gb|EGC58802.1| integration host factor, beta subunit [Neisseria meningitidis M0579] gi|325138271|gb|EGC60840.1| integration host factor, beta subunit [Neisseria meningitidis ES14902] gi|325140473|gb|EGC62994.1| integration host factor, beta subunit [Neisseria meningitidis CU385] gi|325142525|gb|EGC64926.1| integration host factor, beta subunit [Neisseria meningitidis 961-5945] gi|325144557|gb|EGC66856.1| integration host factor, beta subunit [Neisseria meningitidis M01-240013] gi|325198454|gb|ADY93910.1| integration host factor, beta subunit [Neisseria meningitidis G2136] gi|325200072|gb|ADY95527.1| integration host factor, beta subunit [Neisseria meningitidis H44/76] gi|325201987|gb|ADY97441.1| integration host factor, beta subunit [Neisseria meningitidis M01-240149] gi|325204303|gb|ADY99756.1| integration host factor, beta subunit [Neisseria meningitidis M01-240355] gi|325205924|gb|ADZ01377.1| integration host factor, beta subunit [Neisseria meningitidis M04-240196] gi|325208262|gb|ADZ03714.1| integration host factor, beta subunit [Neisseria meningitidis NZ-05/33] Length = 104 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 5 ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + +R+GRN +T + V++ + V FK L++R+ ++ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALK 100 >gi|269837198|ref|YP_003319426.1| histone family protein DNA-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786461|gb|ACZ38604.1| histone family protein DNA-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 97 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 51/96 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLVK+++++ + V F+ I ++ G+ + I+ F TF + ++G+R G Sbjct: 1 MRKSDLVKAVARKVQQPESHVSTVVNATFDAIREALASGDEVAITGFGTFRISERGAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN QT + + I RR FK + LK+ + + Sbjct: 61 RNPQTGERITIPSRRSPSFKPGTQLKRAVSGEAAAA 96 >gi|119946633|ref|YP_944313.1| integration host factor, beta subunit [Psychromonas ingrahamii 37] gi|166975884|sp|A1SYZ9|IHFB_PSYIN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|119865237|gb|ABM04714.1| integration host factor, beta subunit [Psychromonas ingrahamii 37] Length = 95 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL++ + SK F LS K+ V + +S +GE I++ F +F + + RV Sbjct: 1 MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T V++D + V FK L++R+ Sbjct: 61 GRNPKTGDRVELDGKYVPHFKPGKALRERVNAA 93 >gi|158312967|ref|YP_001505475.1| histone family protein DNA-binding protein [Frankia sp. EAN1pec] gi|288919145|ref|ZP_06413484.1| histone family protein DNA-binding protein [Frankia sp. EUN1f] gi|158108372|gb|ABW10569.1| histone family protein DNA-binding protein [Frankia sp. EAN1pec] gi|288349489|gb|EFC83727.1| histone family protein DNA-binding protein [Frankia sp. EUN1f] Length = 94 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV I+++ R ++T+ V +F+ I ++ GE + I+ F F ++ +R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVAGGEKVTITGFGVFERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + V + V F+ S K + Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKASV 89 >gi|302039381|ref|YP_003799703.1| integration host factor subunit alpha [Candidatus Nitrospira defluvii] gi|300607445|emb|CBK43778.1| Integration host factor, alpha subunit [Candidatus Nitrospira defluvii] Length = 91 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D+ I K+ G+S+ D+ V + N + +G+A+KI+ F F V+ KG+R G Sbjct: 1 MRKADIANEIFKQVGVSKNDAADIVELVLNLLKGVLQKGDAVKIAGFGNFVVRSKGARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+ I PRRVV F+ S + KK + Sbjct: 61 RNPRTGEEIGITPRRVVTFRPSQVFKKYVN 90 >gi|331004374|ref|ZP_08327847.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411104|gb|EGG90523.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon 107 str. F0167] Length = 93 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + R++LV +++K+ G +++K+ + + + + + I++ F TF + +R Sbjct: 1 MNRTELVDAMAKKMGNSVTKKEVESALKSFVDVVTEELSNKGKIQLVGFGTFETSVRPAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + +KI V FK LK + + Sbjct: 61 EGRNPRTGETMKIAESVVPKFKPGKALKDAVNN 93 >gi|255067152|ref|ZP_05319007.1| integration host factor, beta subunit [Neisseria sicca ATCC 29256] gi|261365784|ref|ZP_05978667.1| integration host factor, beta subunit [Neisseria mucosa ATCC 25996] gi|255048520|gb|EET43984.1| integration host factor, beta subunit [Neisseria sicca ATCC 29256] gi|288565692|gb|EFC87252.1| integration host factor, beta subunit [Neisseria mucosa ATCC 25996] Length = 104 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%) Query: 5 ITRSDL----VKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L + +++ G L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +R+GRN +T + V++ + V FK L++R+ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERV 95 >gi|171463928|ref|YP_001798041.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193466|gb|ACB44427.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 114 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 3 KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ITRS+LV+S++++F L +D V TL + + + G+ I++ +F + + + Sbjct: 7 QAITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTHALAEGKRIELRGVGSFVLHHRPA 66 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R RN ++ ++V I +RV FK L++R+ Sbjct: 67 RTDRNPKSGEKVLIPEKRVPRFKPGKELRERV 98 >gi|310767180|gb|ADP12130.1| integration host factor subunit beta [Erwinia sp. Ejp617] Length = 95 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ ++ + K V + + + GE I++ F +F + + R Sbjct: 1 MTKSELIERLACQQPHIQAKVLEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +V+++ + V FK L+ R + Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANN 92 >gi|197118442|ref|YP_002138869.1| integration host factor subunit beta [Geobacter bemidjiensis Bem] gi|197087802|gb|ACH39073.1| integration host factor, beta subunit [Geobacter bemidjiensis Bem] Length = 91 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++S++ + LS K + V +F + D+ + G+ I+I +F VK+ + G Sbjct: 1 MNKSELIESLAAKKTLSFKKAEEVVNAVFASMTDALLSGDRIEIRGVGSFVVKEYDAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+++ Sbjct: 61 RNPKTGESISVKAKKLPFFKVGKELKEKV 89 >gi|306820791|ref|ZP_07454416.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551181|gb|EFM39147.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 102 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV I+++ GL++KDS + + ++ V+ E +++ F TF +++ +R G Sbjct: 1 MNKADLVSKIAEKSGLTKKDSETALNAFMASVEEALVKQEKVQLVGFGTFETRERAAREG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN + ++KI + VFKA LK+++ + K Sbjct: 61 RNPRDPKVKIKIPASKAPVFKAGKGLKEKVNASAGKKVAKK 101 >gi|223986260|ref|ZP_03636274.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM 12042] gi|223961755|gb|EEF66253.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM 12042] Length = 94 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 49/94 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + LV ++ + G+++K + V +F+EI + G + IS F F VK + Sbjct: 1 MSELLNKKALVDIVANQMGMTKKAAGETVDLIFDEITSTLKDGGKVDISGFGKFEVKTRA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R G N T +++ + +V FKA+ LK + Sbjct: 61 ERTGINPATKEKITVPATKVPGFKAAKALKDAVK 94 >gi|213021940|ref|ZP_03336387.1| transcriptional regulator HU subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 85 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 42/85 (49%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ I+ + LS+ + + + I +S G+A+++ F TF V + R GRN QT Sbjct: 1 MIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +E+KI V F + LK + Sbjct: 61 GKEIKIAAANVPAFVSGKALKDAVK 85 >gi|302879154|ref|YP_003847718.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302581943|gb|ADL55954.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 97 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ +F L+ D V T+ +E+ + RG I+I F +F + + R Sbjct: 1 MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FK L++R+ Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90 >gi|325983542|ref|YP_004295944.1| integration host factor, beta subunit [Nitrosomonas sp. AL212] gi|325533061|gb|ADZ27782.1| integration host factor, beta subunit [Nitrosomonas sp. AL212] Length = 96 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ F L KD+ V T+ + + S G+ I+I F +F + + R+ Sbjct: 1 MTKSELITRLAARFPQLVAKDAELSVKTIIDAMAQSLASGQRIEIRGFGSFDLNYRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++VK+ + V FKA +++R+ Sbjct: 61 GRNPKSGEKVKVPEKYVPHFKAGKEMRERV 90 >gi|313890818|ref|ZP_07824443.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN 20026] gi|313120919|gb|EFR44033.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN 20026] Length = 91 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLAEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FKA LK + Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91 >gi|256820793|ref|YP_003142072.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|315223936|ref|ZP_07865781.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287] gi|256582376|gb|ACU93511.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|314946108|gb|EFS98112.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287] Length = 92 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ GL++ DS + V F+ + + +G+ + + F ++ V +K +R Sbjct: 1 MNKSELIDAIAAGSGLTKTDSKKAVEAFFSSVEKALKKGDKVAVVGFGSWSVAKKEAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +K+ ++VV FKA + L + + Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGAELSEAVNK 91 >gi|311696395|gb|ADP99268.1| histone-like bacterial DNA-binding protein [marine bacterium HP15] Length = 90 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+ GL+R+ ++ +T +++ +A RGE + + F TF+++ + +R G Sbjct: 1 MRKPELAAAIADRTGLTREKASEVITAFTDQVSAAASRGEDVTLIGFGTFNIRSREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I + V FKA LK I Sbjct: 61 RNPQTGETIRIPASKTVGFKAGKALKDEI 89 >gi|295699910|ref|YP_003607803.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] gi|295439123|gb|ADG18292.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] Length = 92 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + + + + V G+ +++ F +F + +RVG Sbjct: 1 MNKQELIDAVAAATGESKAATGQTIDAIVEAVTKAVVSGDTVQLVGFGSFSTGARAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T +E++I + V F A K+ + Sbjct: 61 RNPSTGEEIQIAAAKTVKFTAGKAFKEAVNAS 92 >gi|82703188|ref|YP_412754.1| integration host factor, beta subunit [Nitrosospira multiformis ATCC 25196] gi|123740640|sp|Q2Y7A9|IHFB_NITMU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|82411253|gb|ABB75362.1| integration host factor, beta subunit [Nitrosospira multiformis ATCC 25196] Length = 94 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ L KD+ V + + + S +G+ I+I F +F + + RV Sbjct: 1 MTKSELIARLAARHPQLGTKDAELAVKVILDAMAKSLSQGQRIEIRGFGSFDLNYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V++ + V FKA +++R+ Sbjct: 61 GRNPKSGEKVRVPEKYVPHFKAGKEMRERV 90 >gi|29348239|ref|NP_811742.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron VPI-5482] gi|253569395|ref|ZP_04846805.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6] gi|298386068|ref|ZP_06995625.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|29340142|gb|AAO77936.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron VPI-5482] gi|251841414|gb|EES69495.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6] gi|298261296|gb|EFI04163.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 90 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E +S+ D+ + + + + ++ G+ + + F TF V ++ +R G Sbjct: 1 MNKSELISAMAAEAQMSKADAKKALDAFISSVTNAMKAGDKVALVGFGTFSVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T + I ++V FKA + L + Sbjct: 61 INPSTKAAITIPAKKVAKFKAGAELSAAVE 90 >gi|255592017|ref|XP_002535650.1| Integration host factor beta-subunit, putative [Ricinus communis] gi|223522397|gb|EEF26731.1| Integration host factor beta-subunit, putative [Ricinus communis] Length = 93 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ + L++KD R V + + ++ G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMINALEAGGRVELRGFGALSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + V FK+ L+ R+ + Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRARLNAE 93 >gi|167644077|ref|YP_001681740.1| integration host factor subunit beta [Caulobacter sp. K31] gi|226709785|sp|B0T273|IHFB_CAUSK RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|167346507|gb|ABZ69242.1| integration host factor, beta subunit [Caulobacter sp. K31] Length = 94 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ ++ + L++KD R V + + + G +++ F V+ + +R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPARA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + + V FK+ L+ R+ D Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRGRLNAD 93 >gi|319404926|emb|CBI78526.1| integration host factor beta chain [Bartonella sp. AR 15-3] Length = 92 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S LV+ I++ L ++D+ V+ +F EI + G+ +++ F F +K + +R Sbjct: 1 MVKSKLVQIIARHNPHLMQRDAENVVSAIFEEISAALANGQRVELRGFGAFSIKARSARN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V ++ + V FK L+ R+ Sbjct: 61 GRNPRTGEAVMVEEKWVPFFKTGKDLRDRLNK 92 >gi|209515147|ref|ZP_03264015.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|209504401|gb|EEA04389.1| histone family protein DNA-binding protein [Burkholderia sp. H160] Length = 92 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + + + + V G+ +++ F +F + +RVG Sbjct: 1 MNKQELIDAVAATTGESKAATGQTIDAIVEAVTKAVVSGDTVQLVGFGSFSTGARAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T +E++I + V F A K+ + Sbjct: 61 RNPSTGEEIQIAAAKTVKFTAGKAFKEAVNAS 92 >gi|77919476|ref|YP_357291.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380] gi|77545559|gb|ABA89121.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380] Length = 94 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ +S G LS+K+S V TL + I D+ V G+ ++I F +F V+ + +R Sbjct: 1 MTKSELIEELSYLNGILSKKESELVVNTLLDGIRDALVGGDRVEIRGFGSFTVRTREARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN ++ + V I ++ FK L++R+ Sbjct: 61 ARNPKSGEVVAIPAKKTAFFKTGKQLRERVDKG 93 >gi|330970215|gb|EGH70281.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 91 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+ +I+++ L+++ S R + + EI + R +++ + TF + +G+R G Sbjct: 1 MRKPDVAAAIAEKADLTKEQSNRVLNAILEEITGALNRKDSVTLVGLGTFLQRHRGARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 61 KNPQTGEPVKIKASNTVAFKPGKALKDSVN 90 >gi|254501752|ref|ZP_05113903.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] gi|222437823|gb|EEE44502.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11] Length = 83 Score = 116 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 42/82 (51%), Positives = 59/82 (71%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 GLSR +S+ V + +EI D V GE++K+SSF +F V+ KG R+GRN +T +EV I P Sbjct: 1 MGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGERIGRNPKTGEEVPISP 60 Query: 78 RRVVVFKASSILKKRIMDDMRG 99 RRV+VFK S++LK+RI D + G Sbjct: 61 RRVMVFKPSNVLKQRINDALTG 82 >gi|254294703|ref|YP_003060726.1| integration host factor subunit beta [Hirschia baltica ATCC 49814] gi|254043234|gb|ACT60029.1| integration host factor, beta subunit [Hirschia baltica ATCC 49814] Length = 99 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+ +S+E + ++ R V + +EI + G+ +++ F F V+Q+ +R Sbjct: 1 MLRSELILRLSEERPEIRPREVERIVDVILDEIAAALEAGDRVELRGFGAFSVRQREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V ++ + V FKA L+ R+ + Sbjct: 61 GRNPRTGESVPVEQKFVPFFKAGKELRARLNNG 93 >gi|46199286|ref|YP_004953.1| putative DNA binding protein [Thermus thermophilus HB27] gi|55981318|ref|YP_144615.1| DNA-binding protein HU [Thermus thermophilus HB8] gi|46196911|gb|AAS81326.1| putative DNA binding protein [Thermus thermophilus HB27] gi|55772731|dbj|BAD71172.1| DNA-binding protein HU (DNA-binding protein II) [Thermus thermophilus HB8] Length = 97 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 51/93 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL +KD V L ++ ++ G ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G T +++KI + FK LK ++ Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 97 >gi|238897499|ref|YP_002923178.1| HU, DNA-binding transcriptional regulator, alpha subunit-1 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465256|gb|ACQ67030.1| HU, DNA-binding transcriptional regulator, alpha subunit-1 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 113 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + GL++ ST VT +F+ I ++ + E ++I F TF V+ + R+ Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++K R V VF A LK + Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89 >gi|126658610|ref|ZP_01729756.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|172036660|ref|YP_001803161.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] gi|126620047|gb|EAZ90770.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|171698114|gb|ACB51095.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] Length = 93 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + +++K + ++ I ++ + + + F +F + + +R G Sbjct: 1 MNKGELIDAVANKAEVTKKQAETVISATIETIMEAVAGDDKVTLVGFGSFEARDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+++ I +V F A + K+R+ Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKERVA 90 >gi|319779504|ref|YP_004130417.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9] gi|317109528|gb|ADU92274.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9] Length = 93 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+++ LS+ + R + I S +G+ + + F TF V + +R G Sbjct: 1 MNKTELIEKIAEKTDLSKAAAGRALDATIEAIKASMKKGQPVTLVGFGTFRVNVRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + ++I +V F LK+ + Sbjct: 61 RNPRTKEVIQIKKAKVPKFVPGKALKEIVNGG 92 >gi|171058612|ref|YP_001790961.1| histone family protein DNA-binding protein [Leptothrix cholodnii SP-6] gi|170776057|gb|ACB34196.1| histone family protein DNA-binding protein [Leptothrix cholodnii SP-6] Length = 116 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 50/93 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+ +S+L++ I+++ +S+ + R + L + + +G+++ + F TF V ++ + Sbjct: 24 GPTVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAA 83 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T +KI +V F+ LK + Sbjct: 84 RSGRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116 >gi|219849666|ref|YP_002464099.1| histone family protein DNA-binding protein [Chloroflexus aggregans DSM 9485] gi|219543925|gb|ACL25663.1| histone family protein DNA-binding protein [Chloroflexus aggregans DSM 9485] Length = 91 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ +S+K++ + + T I ++ RGE + ++ F TF V+ + +R G Sbjct: 1 MQKTDFIKAVAERAKVSQKETKQIIDTALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT +++ I + F ASS LK+ + Sbjct: 61 VNPQTREKIHIPATKTPGFSASSTLKEAVKG 91 >gi|51246021|ref|YP_065905.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54] gi|50877058|emb|CAG36898.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54] Length = 90 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++SI+ +S+ + + + I ++ +G+ + + F TF V ++ +R G Sbjct: 1 MNKKELIESIADAADISKGAAEKALNGTLAAIAETLKKGDKVTLVGFGTFSVSKREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+ +KI + + FKA S L + I Sbjct: 61 RNPRTNEVIKIPAKNIAKFKAGSKLSEAIN 90 >gi|282855395|ref|ZP_06264718.1| histone family protein DNA-binding protein [Pyramidobacter piscolens W5455] gi|282586775|gb|EFB92020.1| histone family protein DNA-binding protein [Pyramidobacter piscolens W5455] Length = 112 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ + ++ L + D+ V + + D+ + ++I F TF V+Q+ +R G Sbjct: 1 MTKAELVEFVREKTNLRKVDAANAVAAMLEGVKDTLQKQGKVQIVGFGTFEVRQRSARTG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 RN Q ++ V I ++V VFKA +L++ + Sbjct: 61 RNPQDPSKTVHIPAKKVPVFKAGKLLREAV 90 >gi|85713207|ref|ZP_01044236.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit [Idiomarina baltica OS145] gi|85692980|gb|EAQ30949.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit [Idiomarina baltica OS145] Length = 94 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++ + L + V + ++ S +G I+I F +F + + R+ Sbjct: 1 MTKSELIEKLTLKFSDLPPRTVESSVKDILEQMIQSLAKGRRIEIRGFGSFSLHYRAPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +V++D + V FK L++R+ + Sbjct: 61 GRNPKTGDQVELDGKYVPHFKPGKELRERVDN 92 >gi|268686838|ref|ZP_06153700.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|268627122|gb|EEZ59522.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-93-1035] Length = 104 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 5 ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + +R+GRN +T + V++ + V FK L++R+ ++ Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALK 100 >gi|218297163|ref|ZP_03497825.1| histone family protein DNA-binding protein [Thermus aquaticus Y51MC23] gi|218242440|gb|EED08979.1| histone family protein DNA-binding protein [Thermus aquaticus Y51MC23] Length = 97 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 50/93 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV ++ GL +KD+ + ++ ++ G ++++ F TF V+++ +R Sbjct: 5 KTVTKADLVDQVAAAAGLKKKDAKAAIDAFLAKVEEALAAGNKVQLTGFGTFEVRKRKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G T +++KI + FK LK ++ Sbjct: 65 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 97 >gi|269468323|gb|EEZ79999.1| bacterial nucleoid DNA-binding protein [uncultured SUP05 cluster bacterium] Length = 95 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T+ D+V ++ + +S + F+ I + GE +K+S F F+++QK +R Sbjct: 2 SVTKKDIVDALVERLSMSHNQALVVTNEFFDSIKQTLALGEDVKLSGFGNFNIRQKSARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + V I R+VV FKA LK Sbjct: 62 GRNPKTGETVTISARKVVTFKAGPKLK 88 >gi|162148812|ref|YP_001603273.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] gi|209545440|ref|YP_002277669.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787389|emb|CAP56984.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] gi|209533117|gb|ACI53054.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 94 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 46/93 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV +++ + L + + V +F+ I + + + +++ F TF + Sbjct: 1 MEKPLNKQELVAAVADDADLPKAKAGEVVDAVFSAIEKALSKKQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + GRN +T +E+ I V FK LK+ + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKNLKEAV 93 >gi|1093154|prf||2103146A HU protein Length = 94 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + +T I ++ G+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN++++I RV F A + ++++ Sbjct: 61 RNPKTNEKMEIPATRVPAFSAGKLEREKVA 90 >gi|332523074|ref|ZP_08399326.1| DNA-binding protein HU-beta [Streptococcus porcinus str. Jelinkova 176] gi|332314338|gb|EGJ27323.1| DNA-binding protein HU-beta [Streptococcus porcinus str. Jelinkova 176] Length = 91 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F I +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATDLTKKDSAAAVDAVFAAIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FKA LK + Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91 >gi|268609259|ref|ZP_06142986.1| nucleoid DNA-binding protein [Ruminococcus flavefaciens FD-1] Length = 92 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++++ ++K++ V + I D+ GE + I F TF V+ + + Sbjct: 1 MTKTELISAVAEKTDFTKKNAESAVNAMIAAITDALASGEKVSIVGFGTFEVRDRKEKQV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT + + + FKA LK + + Sbjct: 61 INPQTKKMMTAPASKAPAFKAGQALKNAVNN 91 >gi|325982744|ref|YP_004295146.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] gi|325532263|gb|ADZ26984.1| histone family protein DNA-binding protein [Nitrosomonas sp. AL212] Length = 90 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++I+K +S+ + + I + + E++ + F TF V + +R G Sbjct: 1 MNKSELIEAIAKSAKISKASAGSALDGALTAIKGALKKNESVTLVGFGTFKVGTRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI +V F A LK + Sbjct: 61 RNPRTGAAIKIKAAKVPKFSAGKALKDAVN 90 >gi|160891545|ref|ZP_02072548.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC 8492] gi|270295354|ref|ZP_06201555.1| DNA-binding protein HU-beta [Bacteroides sp. D20] gi|317478350|ref|ZP_07937514.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|156858952|gb|EDO52383.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC 8492] gi|270274601|gb|EFA20462.1| DNA-binding protein HU-beta [Bacteroides sp. D20] gi|316905509|gb|EFV27299.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 88 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 49/85 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + + + G+ + + F TF V ++G+R+G Sbjct: 1 MNKAELISAMAAESGLSKTDSKKALDAFIASVTKAMKAGDKVSLVGFGTFSVVERGARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++VV FK + L Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGTEL 85 >gi|297568603|ref|YP_003689947.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296924518|gb|ADH85328.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 90 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+ ++K G+S+ + + + + I + +G+ + + F TF V ++ +R G Sbjct: 1 MNKSELVEQMAKAGGISKATAEKALAGALDGITKALKKGDKVTLVGFGTFSVTKRAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + I R+V FKA S L + Sbjct: 61 RNPQTGKPITIKARKVARFKAGSKLSDAVK 90 >gi|160947371|ref|ZP_02094538.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270] gi|158446505|gb|EDP23500.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270] Length = 92 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ S++++ +++ D+ R + + ++ V+GE +++ F TF +++ +R G Sbjct: 1 MNKSELLASMAEKGKITKVDAERALNAFIQTVEETLVKGEKVQLVGFGTFEARERKARSG 60 Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95 RN + + +KI + VFKA LK+ + Sbjct: 61 RNPRNPKEVIKIPASKAPVFKAGKSLKEIVNK 92 >gi|251771160|gb|EES51742.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 98 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 47/97 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K LS+KD V I S +GE + I F TF + +R G Sbjct: 1 MNKTELIEKVAKSSKLSKKDVHAVVDGFLKSIEASMKKGEKVTIVGFGTFGTVSRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +T +E+KI + F L++ + +K Sbjct: 61 RNPKTGKEIKIAAKTAPKFSPGKALRESVNSKAAPKK 97 >gi|319779317|ref|YP_004130230.1| Integration host factor beta subunit [Taylorella equigenitalis MCE9] gi|317109341|gb|ADU92087.1| Integration host factor beta subunit [Taylorella equigenitalis MCE9] Length = 109 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + ++ + +D V T+ + + S +G I+I F +F + Q+ RV Sbjct: 1 MTKSELIDALVASYPQFATRDMDIAVKTILDAMTLSLAQGHRIEIRGFGSFSLSQRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++ +RV FKA L++++ ++ + Sbjct: 61 GRNPRTGEMVEVVGKRVPHFKAGKELREKVDEEFK 95 >gi|206889442|ref|YP_002249053.1| integration host factor alpha-subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741380|gb|ACI20437.1| integration host factor alpha-subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 94 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 59/93 (63%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I + GL R + + V T+F + ++ E +KIS F F V++KGSR+G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN +T Q V+I PR+VV F+ S LK+ I ++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQKNI 93 >gi|238897931|ref|YP_002923611.1| HU, DNA-binding transcriptional regulator, alpha subunit-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|238898508|ref|YP_002924189.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465689|gb|ACQ67463.1| HU, DNA-binding transcriptional regulator, alpha subunit-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466267|gb|ACQ68041.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 119 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + GL++ ST VT +F+ I ++ + E ++I F TF V+ + R+ Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +++K R V VF A LK + Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89 >gi|87312362|ref|ZP_01094454.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645] gi|87284927|gb|EAQ76869.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645] Length = 159 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 62/112 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ +T+ ++VK+IS+E GL++ + V FN I D+ V I++ +F F VK++ + Sbjct: 17 SRVVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAA 76 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 R RN +T ++V + + VV FK +++R+ + ++ SGS Sbjct: 77 RKARNPRTGEKVYVPSKFVVTFKPGKEMEERVRQMEEAERRREEAEAMASGS 128 >gi|222055458|ref|YP_002537820.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] gi|221564747|gb|ACM20719.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32] Length = 93 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + + LSRK+S ++ +F+ + D+ GE ++I F +F ++ + +R Sbjct: 1 MTKSELIDKLVEANSVLSRKESEAIISIVFDSMSDALKSGEKVEIRGFGSFTIRARDARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + VKI ++ FK L++R+ Sbjct: 61 ARNPKSGELVKIPSKKTPFFKTGKELRERVN 91 >gi|62296616|sp|P19436|DBH_THET8 RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding protein II; AltName: Full=TL29 Length = 96 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 51/93 (54%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL +KD V L ++ ++ G ++++ F TF V+++ +R Sbjct: 4 KTVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G T +++KI + FK LK ++ Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 96 >gi|58038572|ref|YP_190536.1| DNA-binding protein HU [Gluconobacter oxydans 621H] gi|58000986|gb|AAW59880.1| DNA-binding protein HU [Gluconobacter oxydans 621H] Length = 94 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 45/93 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +L+ +++ L + ++ V +F+ I + + + +++ F +F + Sbjct: 1 MEKPLNKQELIAAVADAADLPKAKASEVVDAVFSTIEATLAKKQEVRLVGFGSFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + GRN +T +E+ I V FK LK + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKGLKDAV 93 >gi|118579779|ref|YP_901029.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118502489|gb|ABK98971.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 92 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +E L+ K S V T+F+ I D+ G+ ++I F +F ++++ R Sbjct: 1 MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ + V I ++ FK LK+R+ Sbjct: 61 ARNPKSGEVVSIPAKKTPFFKTGKDLKERVN 91 >gi|258592128|emb|CBE68433.1| Integration host factor beta-subunit (IHF-beta) [NC10 bacterium 'Dutch sediment'] Length = 107 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFHVKQKGSR 62 +T++DLV+ ++ + L+++D+ V T+ I + + +++ F +F +Q+ +R Sbjct: 15 MTKADLVELVAAQVYLTKRDTEVVVDTILESIAKALASEDDGKVELRGFGSFRTRQRRAR 74 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN Q+ + V + +R+ FK L++ I Sbjct: 75 QGRNPQSGKAVHVPSKRIPFFKPGKELRQII 105 >gi|15602665|ref|NP_245737.1| HimD [Pasteurella multocida subsp. multocida str. Pm70] gi|14194850|sp|Q9CML8|IHFB_PASMU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|12721104|gb|AAK02884.1| HimD [Pasteurella multocida subsp. multocida str. Pm70] Length = 94 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ ++ KD V + +++ + G+ I++ F +F + + R+ Sbjct: 1 MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERV 90 >gi|163846249|ref|YP_001634293.1| histone family protein DNA-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222524004|ref|YP_002568474.1| histone family protein DNA-binding protein [Chloroflexus sp. Y-400-fl] gi|163667538|gb|ABY33904.1| histone family protein DNA-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222447883|gb|ACM52149.1| histone family protein DNA-binding protein [Chloroflexus sp. Y-400-fl] Length = 91 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K++++ +S+K++ + I ++ RGE + ++ F TF V+ + +R G Sbjct: 1 MQKTDFIKAVAERAKVSQKETKLIIDAALEVITEALARGEKVTLTGFGTFEVRSRQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT +++ I + F ASS LK+ + Sbjct: 61 VNPQTREKMHIPATKTPGFSASSTLKEAVRG 91 >gi|315633974|ref|ZP_07889263.1| integration host factor beta subunit [Aggregatibacter segnis ATCC 33393] gi|315477224|gb|EFU67967.1| integration host factor beta subunit [Aggregatibacter segnis ATCC 33393] Length = 94 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + ++ + K V + ++ GE I++ F +F + + R+ Sbjct: 1 MTKSELIELLVQKNHNVPVKSVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T ++VK+D + V FKA L++R+ Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERV 90 >gi|145590204|ref|YP_001156801.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048610|gb|ABP35237.1| HU family DNA-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 106 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + +S+ + + + + I + +G+++++ F TF ++ +R+G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIDTIIKAVTKGDSVQLIGFGTFASGKRAARMG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + +KI + V F A K + + Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106 >gi|221135421|ref|ZP_03561724.1| integration host factor, beta subunit [Glaciecola sp. HTCC2999] Length = 93 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + + + ++ V L + + RGE I+I F +F + + R Sbjct: 1 MTKSELIEKLMTSYDEVQTREIEVAVKELLEYMAQTLQRGERIEIRGFGSFSLHYRAPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + V++ + V FK L+ R+ Sbjct: 61 GRNPKTGELVELSGKYVPHFKPGKELRDRV 90 >gi|170698163|ref|ZP_02889242.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|170136928|gb|EDT05177.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] Length = 91 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++S G + + + + + + RGEA++I F +F + R G Sbjct: 1 MNKNELIDAVSATTGAGKAHTETAIDAILQTVTQALARGEAVQIVGFGSFSTGARAERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + + I + V F A K + Sbjct: 61 RNPATGEAITIAAAKTVKFAAGKAFKDAVN 90 >gi|315126783|ref|YP_004068786.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315015297|gb|ADT68635.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 89 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++ L++K++ +T+L I S G+ ++I F TF + +R G Sbjct: 1 MNKAELVTAMAHTSELTKKEAQLALTSLQKVITKSLSEGDQVQIYGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT + ++I+ VFK + LK + Sbjct: 61 RNPQTGEAIEIEGANKAVFKPAKALKDSL 89 >gi|148555324|ref|YP_001262906.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148500514|gb|ABQ68768.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 92 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ +S+ LS K+ + V+TLF+ I G +++ F F + + +R+ Sbjct: 1 MIRSELVQLLSQDNPDLSPKEVEKIVSTLFDAITKRLAEGGRVELRGFGAFSTRARDARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T V + +RV FK ++ R+ Sbjct: 61 GRNPRTGDTVPVSAKRVPYFKPGKEMRVRLN 91 >gi|294670876|ref|ZP_06735732.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307363|gb|EFE48606.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 104 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%) Query: 5 ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAQKNGTHLLAKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 + +R GRN +T +V + + V FK L++R+ M Sbjct: 61 RPARQGRNPKTGDKVSVPEKYVPHFKPGKELRERVDRAMAAE 102 >gi|304391395|ref|ZP_07373337.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130] gi|303295624|gb|EFL89982.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130] Length = 91 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + +++ + + + + D+ GE +++ F F V ++ +R+G Sbjct: 1 MNKQELISAMAGKADMNKDQAGAALEAFIDSVTDALKSGEEVRLLGFGNFVVTRREARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +I V FK LK +I Sbjct: 61 RNPQTGAATEIAAANVARFKVGKGLKDKIN 90 >gi|222102284|ref|YP_002546874.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] gi|221728401|gb|ACM31410.1| integration host factor, alpha subunit [Agrobacterium radiobacter K84] Length = 114 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 2/113 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS KT+TR+DL ++ ++ GLSR +S+ V + EI D+ VRGE I +SSFA+ V K Sbjct: 1 MSMKTVTRADLAYAVFQKIGLSRTESSDLVEVVLGEIGDALVRGEPIGLSSFASLQVNAK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN-KDDVTSPS 111 R GRN +T +EV I RRVV F AS ++K RI + RK K PS Sbjct: 61 THRPGRNPRTGEEVLISARRVVKFTASDVMKSRIQKAHKTRKAKLKASPPDPS 113 >gi|150010179|ref|YP_001304922.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|255012559|ref|ZP_05284685.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|256839002|ref|ZP_05544512.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|262382532|ref|ZP_06075669.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|298374554|ref|ZP_06984512.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|301308227|ref|ZP_07214181.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149938603|gb|ABR45300.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|256739921|gb|EEU53245.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|262295410|gb|EEY83341.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|298268922|gb|EFI10577.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|300833697|gb|EFK64313.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 90 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+ + +++++ GLS+ D+ + V + + + G + + F +F V +K +R G Sbjct: 1 MNKSEFISAVAEKSGLSKVDAKKAVEAFVDTVSNELKEGGKVALLGFGSFSVSEKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + ++I R+ V FKA + L + I Sbjct: 61 VNPKTKETIEIAARKAVKFKAGAELNELIK 90 >gi|258542723|ref|YP_003188156.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|329114677|ref|ZP_08243436.1| DNA-binding protein [Acetobacter pomorum DM001] gi|256633801|dbj|BAH99776.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256636860|dbj|BAI02829.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256639913|dbj|BAI05875.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256642969|dbj|BAI08924.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256646024|dbj|BAI11972.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256649077|dbj|BAI15018.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256652064|dbj|BAI17998.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655121|dbj|BAI21048.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] gi|326696157|gb|EGE47839.1| DNA-binding protein [Acetobacter pomorum DM001] Length = 95 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV ++++ L + + V +F I + + +++ F TF + Sbjct: 1 MEKPLNKQELVSAVAEAVDLPKAKAGEVVDAVFGAIEKALSTKQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + GRN +T +E+ I V FK LK + Sbjct: 61 AAKGRNPRTGEEIDIPASTSVRFKPGKALKDAVSG 95 >gi|213963610|ref|ZP_03391862.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno] gi|213953738|gb|EEB65068.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno] Length = 92 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GL++ D+ + V F+ + S +G+ + I F ++ V +K +R Sbjct: 1 MNKTELIDAIAAEAGLTKADAKKAVEAFFSNVEKSLKQGKKVAIVGFGSWSVTKKEARDA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +K+ ++VV FKA + L + + Sbjct: 61 RNPRTGAVIKVPAKKVVKFKAGTELSESVNK 91 >gi|88799151|ref|ZP_01114731.1| probable DNA-binding protein [Reinekea sp. MED297] gi|88778134|gb|EAR09329.1| probable DNA-binding protein [Reinekea sp. MED297] Length = 95 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + +L +I++ LS+ + + L ++I S + E++ + F TF + + R Sbjct: 5 AMRKPELAAAIAERADLSKDKAGEVLNVLLDQITQSVAKKESVTLVGFGTFEARSRAKRK 64 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+N QT E++I V FKA LK + Sbjct: 65 GKNPQTGAEIEIPASNTVAFKAGKALKDAVN 95 >gi|145298939|ref|YP_001141780.1| integration host factor alpha-subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142851711|gb|ABO90032.1| integration host factor alpha-subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 81 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +S++++ V F EI + RGE +KIS F F +++K R GRN +T +++ I RR Sbjct: 1 MSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPGRNPKTGEDIPISARR 60 Query: 80 VVVFKASSILKKRIMD 95 VV F+ LK R+ + Sbjct: 61 VVTFRPGQKLKARVEN 76 >gi|218667321|ref|YP_002425542.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519534|gb|ACK80120.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 91 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ DL + +S GL+ K+ V +F+ I + GE +K+S F F + +K +R Sbjct: 2 TITKLDLTRHLSDTMGLTAKECAALVNAMFDTIRATLASGEDVKLSGFGNFILHEKRARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN + + +I RRVV F+AS ++++R Sbjct: 62 GRNPKNGEPFEIKARRVVTFRASQLVRER 90 >gi|254421741|ref|ZP_05035459.1| DNA-binding protein HU [Synechococcus sp. PCC 7335] gi|196189230|gb|EDX84194.1| DNA-binding protein HU [Synechococcus sp. PCC 7335] Length = 94 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++++ +++K + ++ I ++ +G+ + + F +F + + R G Sbjct: 1 MNKGELVDTVAEKSSVTKKQADAVISAAVESIMEAVSKGDKVTLVGFGSFEPRDRKEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + I V F A K+ + + Sbjct: 61 RNPKTGDTMVIPATTVPAFSAGKQFKEMVAGKKK 94 >gi|52843149|ref|YP_096948.1| integration host factor beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295794|ref|YP_128209.1| hypothetical protein lpl2884 [Legionella pneumophila str. Lens] gi|54298959|ref|YP_125328.1| hypothetical protein lpp3026 [Legionella pneumophila str. Paris] gi|148361296|ref|YP_001252503.1| integration host factor subunit beta [Legionella pneumophila str. Corby] gi|296108635|ref|YP_003620336.1| integration host factor beta subunit [Legionella pneumophila 2300/99 Alcoy] gi|52630260|gb|AAU29001.1| integration host factor beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752744|emb|CAH14179.1| hypothetical protein lpp3026 [Legionella pneumophila str. Paris] gi|53755626|emb|CAH17128.1| hypothetical protein lpl2884 [Legionella pneumophila str. Lens] gi|148283069|gb|ABQ57157.1| integration host factor beta subunit [Legionella pneumophila str. Corby] gi|295650537|gb|ADG26384.1| integration host factor beta subunit [Legionella pneumophila 2300/99 Alcoy] Length = 103 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ L+ K + + + ++ + G+ I+I F +F + + R Sbjct: 1 MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIEIRGFGSFSLHYRPPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N +T ++V + + FK L++R+ Sbjct: 61 AHNPKTGEKVVTEAKYSPHFKPGKELRERVNSS 93 >gi|221104615|ref|XP_002170589.1| PREDICTED: similar to DNA binding protein hu-like protein [Hydra magnipapillata] Length = 90 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +S + GL++KDS + V ++F+ I + + F +F+V+ +R G Sbjct: 1 MNKQDLIDFVSAKTGLTKKDSGQAVDSVFDGIISGLKASKDARFVGFGSFNVQATMARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+ I + FKA K+ + Sbjct: 61 RNPRTGAEIDIPASNRITFKAGKEFKESVN 90 >gi|297564907|ref|YP_003683879.1| histone family protein DNA-binding protein [Meiothermus silvanus DSM 9946] gi|296849356|gb|ADH62371.1| histone family protein DNA-binding protein [Meiothermus silvanus DSM 9946] Length = 96 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 49/93 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT T++DL+ I+ G+ +KD+ V + + D+ G ++++ F TF V+++ +R Sbjct: 4 KTKTKADLIDMIASSSGMKKKDAKTAVDHFLSHLQDALASGNKVQLTGFGTFEVRKRKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G T Q++KI FK LK+++ Sbjct: 64 TGVKPGTTQKIKIPASSYPAFKPGKALKEKVKK 96 >gi|94263644|ref|ZP_01287453.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94267151|ref|ZP_01290783.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93452119|gb|EAT02793.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93455949|gb|EAT06104.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 92 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 53/92 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+++++ + +++ T+ + D+ G+ I+I F +F VK+ S G Sbjct: 1 MNKSDLIEALATASEIPNREAAAITRTILAAMGDALSDGDNIEIRGFGSFTVKEYDSYYG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +++++ P+R+ FK L++R+ + Sbjct: 61 RNPKTGEKIRVAPKRMPFFKMGKELRERLNQE 92 >gi|186474390|ref|YP_001863361.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184198349|gb|ACC76311.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 92 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 40/92 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + + + RGE +++ F +F + R G Sbjct: 1 MNKQELIDAVAATTGESKASTGETIDAIIETVTAAVTRGETVQLVGFGSFSTGARAERSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T + + I + V F A K + Sbjct: 61 RNPSTGETITIPAAKTVKFSAGKAFKDVVNAA 92 >gi|328953767|ref|YP_004371101.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328454091|gb|AEB09920.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 95 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 51/92 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+++++K L+ K + V TLF + ++ V+ E I+I F +F VK G Sbjct: 1 MNKSQLIEALAKAENLTIKRAEMVVNTLFENMTNALVQDERIEIRGFGSFKVKCYEGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + +++ +++ FK LK+R+ Sbjct: 61 RNPKTGEVIEVCDKKLPFFKVGKELKERVDSS 92 >gi|284108794|ref|ZP_06386459.1| Histone-like bacterial DNA-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283829868|gb|EFC34159.1| Histone-like bacterial DNA-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 91 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D+ I ++ G+S+ ++ V + + D +GEA+KI+ F F V+ KG R G Sbjct: 1 MRKADIANYICEQVGVSKTEAMGLVEYVLQCMKDVLRKGEAVKIAGFGNFMVRNKGERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+ I PRRVV F+AS I K+ + Sbjct: 61 RNPRTGEEIAITPRRVVTFRASQIFKRDVN 90 >gi|222101973|ref|YP_002546563.1| integration host factor alpha-subunit protein [Agrobacterium radiobacter K84] gi|221728090|gb|ACM31099.1| integration host factor alpha-subunit protein [Agrobacterium radiobacter K84] Length = 117 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 65/101 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+TR+D+ SI ++ GLSR +S V T+ EIC + +RGE + +SSFA F+V++K R Sbjct: 4 KTLTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN +T ++ +I RRV+ F AS +K +I GRK Sbjct: 64 PGRNPKTGEDYQIAARRVISFTASDAVKTQIQKAHVGRKMK 104 >gi|153208209|ref|ZP_01946619.1| integration host factor, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706842|ref|YP_001423686.1| integration host factor beta-subunit [Coxiella burnetii Dugway 5J108-111] gi|165923951|ref|ZP_02219783.1| integration host factor, beta subunit [Coxiella burnetii RSA 334] gi|212217938|ref|YP_002304725.1| integration host factor beta-subunit [Coxiella burnetii CbuK_Q154] gi|120576114|gb|EAX32738.1| integration host factor, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154356128|gb|ABS77590.1| integration host factor beta-subunit [Coxiella burnetii Dugway 5J108-111] gi|165916607|gb|EDR35211.1| integration host factor, beta subunit [Coxiella burnetii RSA 334] gi|212012200|gb|ACJ19580.1| integration host factor beta-subunit [Coxiella burnetii CbuK_Q154] Length = 112 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ I+ ++ LS KD V + + ++ +G+ I+I F +F + + +R Sbjct: 1 MVKSELINRIAMQQKALSWKDVELSVNYILEYMSNTLGQGDRIEIRGFGSFSLHYRPTRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG---RKCNKDDVTSPS 111 N +T + V + + FK L+ R+ D+ R+ N D + Sbjct: 61 AHNPKTGERVYTEAKYTPHFKPGKDLRDRVNDNRHQFPIREVNNGDGEDAA 111 >gi|303236678|ref|ZP_07323259.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] gi|302483182|gb|EFL46196.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] Length = 91 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I ++ V G+ +++ F T+ V ++ + G Sbjct: 1 MNKTELIEKIAAGAGLSKVDAKKALDATTAAIKEALVAGDKVQLVGFGTYSVTERPAHEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T ++++I ++V FK + L + Sbjct: 61 INPATKEKIQIAAKKVAKFKPGAELADAVN 90 >gi|29655026|ref|NP_820718.1| integration host factor beta-subunit [Coxiella burnetii RSA 493] gi|161830808|ref|YP_001597559.1| integration host factor, beta subunit [Coxiella burnetii RSA 331] gi|212211779|ref|YP_002302715.1| integration host factor beta-subunit [Coxiella burnetii CbuG_Q212] gi|29542295|gb|AAO91232.1| integration host factor beta-subunit [Coxiella burnetii RSA 493] gi|161762675|gb|ABX78317.1| integration host factor, beta subunit [Coxiella burnetii RSA 331] gi|212010189|gb|ACJ17570.1| integration host factor beta-subunit [Coxiella burnetii CbuG_Q212] Length = 112 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ I+ ++ LS KD V + + ++ +G+ I+I F +F + + R Sbjct: 1 MVKSELINRIAMQQKALSWKDVELSVNYILEYMSNTLGQGDRIEIRGFGSFSLHYRPRRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG---RKCNKDDVTSPS 111 N +T + V + + FK L+ R+ D+ R+ N D + Sbjct: 61 AHNPKTGERVYTEAKYTPHFKPGKDLRDRVNDNRHQFPIREVNNGDGEDAA 111 >gi|297538181|ref|YP_003673950.1| histone family protein DNA-binding protein [Methylotenera sp. 301] gi|297257528|gb|ADI29373.1| histone family protein DNA-binding protein [Methylotenera sp. 301] Length = 90 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ GL++ D+ R + I + G+A+ + F TF V Q+ +R G Sbjct: 1 MNKSELIDAIAASAGLTKADAGRAIDATTAAITAALKNGDAVTLVGFGTFKVTQRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T E+KI R+ F A LK + Sbjct: 61 RNPRTGAELKIAARKAPAFTAGKTLKDSVN 90 >gi|239616737|ref|YP_002940059.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239505568|gb|ACR79055.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 90 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I+ G+++K + + + + +GE +K+ F TF V + R G Sbjct: 1 MNKKELVAEIAGRTGVTKKRAAEILDCFIEIVGEKLSKGEEVKLVGFGTFEVATRKPRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + +KI +V F+A LK+++ Sbjct: 61 VNPRTKKPIKIPGGKVPKFRAGKELKEKVK 90 >gi|302877955|ref|YP_003846519.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] gi|302580744|gb|ADL54755.1| integration host factor, beta subunit [Gallionella capsiferriformans ES-2] Length = 97 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ +F L+ D V T+ +E+ + RG I+I F +F + + R Sbjct: 1 MTRSELIVQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ V + + V FK L++R+ Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERV 90 >gi|77360230|ref|YP_339805.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875141|emb|CAI86362.1| DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation [Pseudoalteromonas haloplanktis TAC125] Length = 89 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +++++ L++KD+ +T+L I S G+ ++I+ F TF + +R G Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT ++I+ VFKAS LK Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKD 87 >gi|261377756|ref|ZP_05982329.1| integration host factor, beta subunit [Neisseria cinerea ATCC 14685] gi|269146042|gb|EEZ72460.1| integration host factor, beta subunit [Neisseria cinerea ATCC 14685] Length = 104 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 5 ITRSDLVKSISK------EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+S+L+ +++ L KD V L + + S RG+ I+I F +F + Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + +R+GRN +T V++ + V FK L++R+ ++ Sbjct: 61 RPARIGRNPKTGDRVEVPEKHVPHFKPGKELRERVDLALK 100 >gi|160942315|ref|ZP_02089624.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC BAA-613] gi|158434872|gb|EDP12639.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC BAA-613] Length = 92 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV +S GL+ K S + + L + I G + + F F V + +R+ Sbjct: 1 MNKRQLVDRMSSGSGLTMKQSEKALNGLMDVIHSELSSGGNVSLIGFGVFSVADRKARMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+++ R++ VFKA S LK+ + Sbjct: 61 RNPKTGEEMEVKARKIPVFKAGSTLKRAVN 90 >gi|167763758|ref|ZP_02435885.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC 43183] gi|167697874|gb|EDS14453.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC 43183] Length = 88 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ R+G Sbjct: 1 MNKSELISAMAAEGGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I+ ++V FK S L Sbjct: 61 INPATKKPIQIEAKKVAKFKPGSEL 85 >gi|83643450|ref|YP_431885.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] gi|83631493|gb|ABC27460.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396] Length = 91 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +I+ LS+ + + L +EI D+ R E + + F TF + + +R G Sbjct: 1 MRKPELAAAIAARTNLSKSKAAEVLNALTDEIADAVSRNETVSLIGFGTFSQRNRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T +KI + V FKA +LK + Sbjct: 61 KNPKTGAAIKIPASKTVGFKAGKLLKDAVNK 91 >gi|87198191|ref|YP_495448.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87133872|gb|ABD24614.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 93 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L+++++KE G+ ++ R V F+EI G +++ F F +++ +R Sbjct: 1 MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V++ ++V FKA +++R+ D Sbjct: 61 GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD 93 >gi|315499460|ref|YP_004088263.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315417472|gb|ADU14112.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 91 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL+ I+ E G+++ + V T+F I ++AV G+ + + SF F V+ K +R G Sbjct: 1 MNTSDLIDKIATEHGVTKVAAKAIVDTVFGSIVEAAVLGQEVNLPSFGKFKVQDKPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T ++I + +VF+ LK R+ Sbjct: 61 RNPSTGATIQIAASKKLVFQPGKALKDRLN 90 >gi|51246635|ref|YP_066519.1| integration host factor, alpha-subunit [Desulfotalea psychrophila LSv54] gi|50877672|emb|CAG37512.1| probable integration host factor, alpha-subunit [Desulfotalea psychrophila LSv54] Length = 94 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T++DL++ + K+ GL++ +T V D+ + G + +S F F+VK K SR Sbjct: 2 TLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT E+ ++ RRVV FK S IL+ +I Sbjct: 62 RGRNPQTGDELTLEARRVVTFKPSGILRDKIN 93 >gi|195953425|ref|YP_002121715.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195933037|gb|ACG57737.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 89 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 51/87 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++++ +++ + + V +F+ + +S + E I F TF V + +R G Sbjct: 1 MTKTELVSYVAQQADITKAKAEKCVNAVFSALAESLKKKERTTIPGFGTFTVSTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T QE+KI R V++ S LKK Sbjct: 61 RNPKTGQEIKIPARTTAVWRPSKELKK 87 >gi|313672997|ref|YP_004051108.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939753|gb|ADR18945.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 92 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 58/90 (64%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I + G+S+KD + V ++FN+I D + +KIS F +F VK +G R+G Sbjct: 1 MTKADIVDIIYETLGISKKDIYKVVDSVFNKIKDEILSKNNVKISGFGSFEVKTRGRRIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E I+ R VV FK S +LK+ + Sbjct: 61 RNPKTGEEKVIEARTVVSFKPSRLLKEEVN 90 >gi|240949275|ref|ZP_04753619.1| integration host factor subunit beta [Actinobacillus minor NM305] gi|240296391|gb|EER47035.1| integration host factor subunit beta [Actinobacillus minor NM305] Length = 93 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ S+ L V + +I S GE I+I F +F + + +RV Sbjct: 1 MTKSELIDNLFSQNPSLHLSMVEDGVKEILEKIMFSLENGERIEIRGFGSFSLHHRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK++ + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLEAKSVPHFKAGKELKERV 90 >gi|33602628|ref|NP_890188.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50] gi|33577070|emb|CAE35626.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50] Length = 93 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 48/91 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T+ DL+ ++S E G SR+D+ V L + I + + GE + F Q+ +R Sbjct: 2 SLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + V+I V F AS LK ++ Sbjct: 62 GRNPQTGEPVEIAASVAVKFSASKTLKDQVN 92 >gi|170288480|ref|YP_001738718.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2] gi|7245986|pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima gi|7245987|pdb|1B8Z|B Chain B, Hu From Thermotoga Maritima gi|388071|gb|AAA27416.1| Hu DNA-binding protein [Thermotoga maritima] gi|170175983|gb|ACB09035.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2] Length = 90 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90 >gi|307611843|emb|CBX01556.1| hypothetical protein LPW_32431 [Legionella pneumophila 130b] Length = 103 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ L+ K + + + ++ + G+ I+I F +F + + R Sbjct: 1 MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIEIRGFGSFSLHYRPPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N +T ++V + + FK L++R+ Sbjct: 61 AHNPKTGEKVVTEAKYSPHFKPGKELRERVNSS 93 >gi|113461005|ref|YP_719072.1| integration host factor subunit alpha [Haemophilus somnus 129PT] gi|170717573|ref|YP_001784659.1| integration host factor subunit alpha [Haemophilus somnus 2336] gi|123031334|sp|Q0I3K4|IHFA_HAES1 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|189044702|sp|B0UU60|IHFA_HAES2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|112823048|gb|ABI25137.1| integration host factor, alpha-subunit [Haemophilus somnus 129PT] gi|168825702|gb|ACA31073.1| integration host factor, alpha subunit [Haemophilus somnus 2336] Length = 97 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +L S+ ++ GL++ ++ + V F +I S GE +K+S F F ++ K SR Sbjct: 2 ALTKIELKNSLIEQ-GLNKLEAKKVVEGFFEQIRVSLENGEDVKLSGFGNFELRDKSSRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + + RRVVVF+ L+ R+ Sbjct: 61 GRNPKTGEAIPVSARRVVVFRPGQKLRSRVEK 92 >gi|237749146|ref|ZP_04579626.1| integration host factor subunit beta [Oxalobacter formigenes OXCC13] gi|229380508|gb|EEO30599.1| integration host factor subunit beta [Oxalobacter formigenes OXCC13] Length = 97 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ S++ + L KD+ V T+ + + D+ G+ I+I F +F + + RV Sbjct: 1 MTKSELIVSLAGSYPQLLAKDAELTVKTILDAMSDALANGQRIEIRGFGSFALSVRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ ++V ++ +RV FK L++R+ Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRV 90 >gi|332973006|gb|EGK10945.1| integration host factor beta subunit [Psychrobacter sp. 1501(2011)] Length = 99 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 1 MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M++ I +SDL++ +S +S + V + + + + I++ F TF + + Sbjct: 1 MTEVINKSDLIQDVSARCDYISETEVDDAVREIIELLSEKLIENNRIEVRGFGTFCLHHR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN +T + V + + + FK L++ + D Sbjct: 61 EARQGRNPKTGEMVMVPQKSIPHFKPGKALREGVND 96 >gi|171464303|ref|YP_001798416.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193841|gb|ACB44802.1| histone family protein DNA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 106 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ + +S+ + + + I + +G+++++ F TF ++ +R+G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + +KI + V F A K + + Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106 >gi|116747454|ref|YP_844141.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116696518|gb|ABK15706.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 95 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 55/91 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ +V+++ + ++ +S + + TLF + + GE + IS F F VK+K R Sbjct: 2 TLTKAHIVENLFAKNIFTKTESAQIIETLFEIVKQTLEHGEDVLISGFGKFSVKEKNQRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + + PR+VV FK S +L++RI Sbjct: 62 GRNPQTGDPIMLSPRKVVTFKCSGVLRERIN 92 >gi|222099394|ref|YP_002533962.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359] gi|221571784|gb|ACM22596.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359] Length = 90 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV ++K+ G +KD + + I ++ +GE +++ F +F V++ +R G Sbjct: 1 MNKKELVDRVAKKAGAKKKDVKVILDAVLETITEALAKGEKVQLVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V F+ LK+++ Sbjct: 61 VNPQTKKPITIPERKVPKFRPGKALKEKVK 90 >gi|149193907|ref|ZP_01871005.1| non-specific DNA-binding protein [Caminibacter mediatlanticus TB-2] gi|149135860|gb|EDM24338.1| non-specific DNA-binding protein [Caminibacter mediatlanticus TB-2] Length = 102 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 48/100 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDLV +++++ GLS+KD + I ++ GE + F +F V + RV Sbjct: 1 MKKSDLVAAVAEKTGLSKKDVAAVIDATIETIQEALKNGEKVSFIGFGSFEVVTRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R T +E+KI + V FK LK+ + +K Sbjct: 61 RVPGTGKEIKIPETKSVKFKVGKKLKELVNSGKTTKKRGC 100 >gi|17548076|ref|NP_521478.1| histone-like DNA-binding protein HU-beta (NS1) [Ralstonia solanacearum GMI1000] gi|17430382|emb|CAD17147.1| probable histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum GMI1000] Length = 92 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S G+ + + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGNGDTVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >gi|77166413|ref|YP_344938.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|254435865|ref|ZP_05049372.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|76884727|gb|ABA59408.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|207088976|gb|EDZ66248.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] Length = 94 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV + + LS+ + R V LF I + + F +F V+++ +R G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ Q+ + + I + FK S LK+ + + Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQQRKQ 94 >gi|15643036|ref|NP_228079.1| DNA-binding protein, HU [Thermotoga maritima MSB8] gi|6226592|sp|P36206|DBH_THEMA RecName: Full=DNA-binding protein HU gi|4980764|gb|AAD35355.1|AE001709_1 DNA-binding protein, HU [Thermotoga maritima MSB8] Length = 90 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MTKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90 >gi|218264602|ref|ZP_03478390.1| hypothetical protein PRABACTJOHN_04096 [Parabacteroides johnsonii DSM 18315] gi|218221888|gb|EEC94538.1| hypothetical protein PRABACTJOHN_04096 [Parabacteroides johnsonii DSM 18315] Length = 91 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ GLS+ D+ + V + G + + F +F V +K +R G Sbjct: 2 MNKTEFINAVAEKSGLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKAARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T Q ++I R+ V FKA + L + I Sbjct: 62 VNPKTKQPIEIPARKSVKFKAGAELTEIIK 91 >gi|167036347|ref|YP_001671578.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] gi|166862835|gb|ABZ01243.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] Length = 101 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L I+++ L+++ + + + + + I + + + + + F TF + +G+R G Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + VKI V FK LK + Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89 >gi|90416550|ref|ZP_01224481.1| integration host factor beta subunit [marine gamma proteobacterium HTCC2207] gi|90331749|gb|EAS46977.1| integration host factor beta subunit [marine gamma proteobacterium HTCC2207] Length = 94 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ IS L KD V + + + V + +I F +F + + RV Sbjct: 1 MTKSELIEKISASQDQLPPKDVELAVRMILERMTHALVTNQRTEIRGFGSFSLHYRAPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T V + + V FK L+ R+ D + Sbjct: 61 GRNPKTGDAVDLSGKYVPYFKPGKELRIRVNDSL 94 >gi|322514507|ref|ZP_08067544.1| integration host factor beta subunit [Actinobacillus ureae ATCC 25976] gi|322119577|gb|EFX91655.1| integration host factor beta subunit [Actinobacillus ureae ATCC 25976] Length = 93 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ + +S L K V L +I S +GE +++ F +F + + R+ Sbjct: 1 MTKSELIDNLVSLNPTLQVKSVEDGVKELLEQIMLSLEQGERVEVRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90 >gi|315223284|ref|ZP_07865145.1| DNA-binding protein HU [Streptococcus anginosus F0211] gi|319938741|ref|ZP_08013105.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV] gi|315187716|gb|EFU21470.1| DNA-binding protein HU [Streptococcus anginosus F0211] gi|315419709|gb|ADU15824.1| histone-like protein [Streptococcus anginosus SK52] gi|319811791|gb|EFW08057.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+ I +V FKA LK + Sbjct: 63 NPQTGAEITIAASKVPAFKAGKALKDAVK 91 >gi|58176578|pdb|1RIY|A Chain A, Hu Mutant V42i From Thermotoga Maritima Length = 90 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE I+I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90 >gi|257464686|ref|ZP_05629057.1| integration host factor subunit beta [Actinobacillus minor 202] gi|257450346|gb|EEV24389.1| integration host factor subunit beta [Actinobacillus minor 202] Length = 93 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++ S+ L V + +I S GE I+I F +F + + +RV Sbjct: 1 MTKSELIDNLFSQNPSLHLSMVEDGVREILEKIMFSLENGERIEIRGFGSFSLHHRDARV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK++ + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLEAKSVPHFKAGKELKERV 90 >gi|325955263|ref|YP_004238923.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] gi|323437881|gb|ADX68345.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] Length = 92 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + G+S++ + + + + + ++ +GE + + F TF ++ +R G Sbjct: 1 MNKSELIDAIAADAGISKEAAKKALNSFTTNVTNALAKGEKVALVGFGTFSTSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N QT +E++I + V FKA S L + Sbjct: 61 INPQTKKEIQIAAKTVAKFKAGSELSAAVDK 91 >gi|85859096|ref|YP_461298.1| integration host factor beta-subunit [Syntrophus aciditrophicus SB] gi|85722187|gb|ABC77130.1| integration host factor beta-subunit [Syntrophus aciditrophicus SB] Length = 93 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++++SK+ GL+ K + + LF + +G I+I F +F V+ + G Sbjct: 1 MNKSELIEALSKKEGLTEKKAIEVINLLFKGFTEELQKGGRIEIRGFGSFVVRNYNAYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + +K+ P+R+ FK LK+R+ Sbjct: 61 RNPKTGKNIKVSPKRLPFFKVGKELKERV 89 >gi|299065160|emb|CBJ36324.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CMR15] Length = 92 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S G+ + + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGSGDTVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >gi|83749477|ref|ZP_00946468.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|207722088|ref|YP_002252526.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum MolK2] gi|207744856|ref|YP_002261248.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum IPO1609] gi|300689790|ref|YP_003750785.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] gi|300702469|ref|YP_003744069.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|83723874|gb|EAP71061.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|206587262|emb|CAQ17846.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum MolK2] gi|206596266|emb|CAQ63193.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia solanacearum IPO1609] gi|299070130|emb|CBJ41420.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|299076850|emb|CBJ49462.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] Length = 92 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S +G+A+ + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >gi|239908260|ref|YP_002955001.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239798126|dbj|BAH77115.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 92 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K++ +++ L + + FV F+ I + + ++I F +F VK+ G Sbjct: 1 MNKGELIKAVGEKYNLDYEFAVDFVNLFFDSIRQALNNEDRVEIRGFGSFAVKKYNGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T V+I P+++ FK K+ + Sbjct: 61 RNPKTGVTVEIKPKKLPFFKPGKDFKEYLN 90 >gi|56476801|ref|YP_158390.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum aromaticum EbN1] gi|56312844|emb|CAI07489.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum aromaticum EbN1] Length = 104 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +++ F L +D+ V + + ++ +G I+I F +F + RV Sbjct: 1 MTKSELIDRLAQRFPQLVARDAEEAVKVILGTMTNALTQGGRIEIRGFGSFSSSYRPPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ + V + + V FK+ L++R+ Sbjct: 61 GRNPKSGETVHVSGKYVPHFKSGKELRERV 90 >gi|119475179|ref|ZP_01615532.1| probable DNA-binding protein [marine gamma proteobacterium HTCC2143] gi|119451382|gb|EAW32615.1| probable DNA-binding protein [marine gamma proteobacterium HTCC2143] Length = 90 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL I+ + + + + ++ + +EI ++ R E++ + F TF + + +R G Sbjct: 1 MRKSDLATEIADKADIPADKAQQVLSAILDEITNALSRKESVSLIGFGTFEPRHRNARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT ++I V FK LK+ + Sbjct: 61 KNPQTGVALQIAASNTVGFKPGKALKEAVN 90 >gi|283780883|ref|YP_003371638.1| histone family protein DNA-binding protein [Pirellula staleyi DSM 6068] gi|283439336|gb|ADB17778.1| histone family protein DNA-binding protein [Pirellula staleyi DSM 6068] Length = 180 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 54/94 (57%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T+ ++VK+IS+E GL++ + V F+ I ++ V I++ +F F VK++ + Sbjct: 54 SPVVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAA 113 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN +T Q V + + VV FK +++++ Sbjct: 114 RKARNPRTGQPVYVAEKFVVTFKPGKEMEEKVRQ 147 >gi|281412322|ref|YP_003346401.1| histone family protein DNA-binding protein [Thermotoga naphthophila RKU-10] gi|281373425|gb|ADA66987.1| histone family protein DNA-binding protein [Thermotoga naphthophila RKU-10] Length = 90 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVRVILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90 >gi|329964256|ref|ZP_08301357.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057] gi|328525561|gb|EGF52604.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057] Length = 88 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GLS+ DS + + + + G+ + + F TF V ++ +R+G Sbjct: 1 MNKAELISAMAAEAGLSKVDSKKALDAFIVSVTKAMKAGDKVSLVGFGTFSVAERSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++VV FK + L Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85 >gi|86157126|ref|YP_463911.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773637|gb|ABC80474.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 116 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 54/109 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F+ + D+ +GE I+I FHVK G Sbjct: 1 MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN +T + + + P+R ++F+ L+ R+ G G+ Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPELGGAKPSQSEGEGQGT 109 >gi|323697944|ref|ZP_08109856.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323457876|gb|EGB13741.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 91 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++S++ + ++T+ V + + ++ +RG+ ++I F +F +K G Sbjct: 1 MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V++ P+++ F+ LK+ I Sbjct: 61 RNPKTGTVVQVRPKKLPFFRPGKELKEYINQ 91 >gi|323137735|ref|ZP_08072811.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397032|gb|EFX99557.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 128 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 43/104 (41%), Positives = 57/104 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+TR+DL +I K GL R DS +V + EI D V E +K+SSF F V+ K Sbjct: 22 GRTVTRADLADAIHKRLGLPRADSANYVEMVLEEIFDRIVSREDVKLSSFGAFLVRSKKE 81 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 R+GRN +T KI R VV FK S+IL+ RI + D Sbjct: 82 RLGRNPKTGAGAKITARLVVTFKPSNILRSRINGGRSVANGHDD 125 >gi|294146438|ref|YP_003559104.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] gi|292676855|dbj|BAI98372.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] Length = 91 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++L ++++ + GL++ D+ ++V +F+ I +A +GE + ++ F F VK + +R G Sbjct: 1 MNNTELAEALAADHGLTKADARKYVDGVFSAIAGAAAKGEEVSLNGFGKFKVKDQPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T ++I + + F + +K ++ Sbjct: 61 RNPSTGAVIQIAASKKLTFTPAKAVKDQLNG 91 >gi|187930619|ref|YP_001901106.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|241664809|ref|YP_002983169.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|309780383|ref|ZP_07675134.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] gi|187727509|gb|ACD28674.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|240866836|gb|ACS64497.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|308921086|gb|EFP66732.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA] Length = 92 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I +S +G+A+ + F TF ++ R+ Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91 >gi|73543074|ref|YP_297594.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] gi|72120487|gb|AAZ62750.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] Length = 92 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + + I D+ G+ + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVANGDTLSLVGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92 >gi|148269794|ref|YP_001244254.1| histone family protein DNA-binding protein [Thermotoga petrophila RKU-1] gi|147735338|gb|ABQ46678.1| bacterial nucleoid protein Hbs [Thermotoga petrophila RKU-1] Length = 90 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G Sbjct: 1 MNKKELIDRVAKKAGAKKKDVRVILDTILETISEALAKGEKVQIVGFGSFEVRKAAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTRKPITIPERKVPKFKPGKALKEKVK 90 >gi|308272922|emb|CBX29526.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.] Length = 110 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T+++LV +I+ + +++ + + + + + + + + F TF ++ +R Sbjct: 21 MTKAELVDAIAADAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRAARK 80 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E+KI R VV FKA LK+ + Sbjct: 81 GRNPQTGAEIKIKARNVVKFKAGKKLKESV 110 >gi|306825075|ref|ZP_07458417.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432511|gb|EFM35485.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 91 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATDLTKKDSAAAVDAVFAAVTEYLTAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALKDAVK 91 >gi|284928884|ref|YP_003421406.1| nucleoid protein Hbs [cyanobacterium UCYN-A] gi|284809343|gb|ADB95048.1| bacterial nucleoid protein Hbs [cyanobacterium UCYN-A] Length = 93 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ + +++K + ++ I ++ + + + F +F + + +R G Sbjct: 1 MNKGELIDTVANKADVTKKQADSIISATIETIMEAVAGDDKVTLVGFGSFEARNRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+++ I +V F A + K+++ Sbjct: 61 RNPKTNEKMSIPATKVPAFSAGKLFKEKVA 90 >gi|84498266|ref|ZP_00997063.1| DNA-binding protein HU [Janibacter sp. HTCC2649] gi|84381766|gb|EAP97649.1| DNA-binding protein HU [Janibacter sp. HTCC2649] Length = 92 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+DL + + LS D+ R + + I D+ V G+ + + F F +++ +R G Sbjct: 1 MNRTDLKNKVVDKAELSGADADRAIDAVLGAITDALVAGDKVSLPGFGIFETRERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + ++I FK ++ LK+++ Sbjct: 61 RNPQTGEALEIKASTAAAFKPAAELKRKLAKS 92 >gi|323144511|ref|ZP_08079112.1| integration host factor subunit alpha [Succinatimonas hippei YIT 12066] gi|322415724|gb|EFY06457.1| integration host factor subunit alpha [Succinatimonas hippei YIT 12066] Length = 94 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 51/93 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR+++ + + ++ + + FV F I S RGE +K++ F F +K K +R Sbjct: 2 ALTRAEITERLVTKYNFPKFRAQSFVDDFFESIAKSLERGEFVKLTGFGNFELKMKTARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T QEV I PRRV FKA L+ RI Sbjct: 62 GRNPKTGQEVTIAPRRVTTFKAGQKLRDRISQS 94 >gi|258593296|emb|CBE69635.1| DNA-binding protein HU-beta (NS1) (HU-1) [NC10 bacterium 'Dutch sediment'] Length = 90 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++K+ +++K + + ++ I DS +G+ + + F TF V ++ +R G Sbjct: 1 MTKAELVDKVAKDACITKKAAESALASVTAGIRDSLKKGKKVTLVGFGTFSVARRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI + F+A LK + Sbjct: 61 RNPQTGDIIKIKAAKTPRFRAGKALKDAV 89 >gi|222148267|ref|YP_002549224.1| HU-like DNA-binding protein alpha subunit [Agrobacterium vitis S4] gi|221735255|gb|ACM36218.1| HU-like DNA-binding protein alpha subunit [Agrobacterium vitis S4] Length = 91 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +++ + GLS+ D+ V +F+ + G I+++ F F V + + G Sbjct: 1 MNKSELVNAVADKAGLSKADAASAVDAVFDTVQAELKNGGDIRLAGFGAFTVSHREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90 >gi|154491895|ref|ZP_02031521.1| hypothetical protein PARMER_01522 [Parabacteroides merdae ATCC 43184] gi|154088136|gb|EDN87181.1| hypothetical protein PARMER_01522 [Parabacteroides merdae ATCC 43184] Length = 90 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++++ GLS+ D+ + V + G + + F +F V +K +R G Sbjct: 1 MNKTEFINAVAEKSGLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKSARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T Q ++I R+ V FKA + L + I Sbjct: 61 VNPKTKQPIEIPARKSVKFKAGAELTEIIK 90 >gi|188997447|ref|YP_001931698.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932514|gb|ACD67144.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 92 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ ++++ GL + ++ R V + ++ +GE I F+VK++ +R G Sbjct: 1 MTKSELIAKVAEKAGLKKSEAERAVNVAIEALVEALSKGERTAIPGLGVFNVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+KI R+VV F A+ LK+ + Sbjct: 61 RNPRTGKEIKIPKRKVVAFTAAKSLKEAVNK 91 >gi|91779140|ref|YP_554348.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400] gi|170693299|ref|ZP_02884459.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|187919389|ref|YP_001888420.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|296156548|ref|ZP_06839386.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|307727373|ref|YP_003910586.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|323528361|ref|YP_004230513.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] gi|91691800|gb|ABE34998.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400] gi|170141829|gb|EDT09997.1| histone family protein DNA-binding protein [Burkholderia graminis C4D1M] gi|187717827|gb|ACD19050.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|295893147|gb|EFG72927.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|307587898|gb|ADN61295.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1003] gi|323385363|gb|ADX57453.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1001] Length = 92 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ + + + + + + V G+ +++ F +F + +RVG Sbjct: 1 MNKQELIDAVAAATGESKAATGQTIDAIVEAVTKAVVGGDTVQLVGFGSFSTGARAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T E++I + V F A K+ + Sbjct: 61 RNPSTGAEIQIAAAKTVKFTAGKAFKEAVNAS 92 >gi|256397147|ref|YP_003118711.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] gi|256363373|gb|ACU76870.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] Length = 232 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+++++ + S+KD+ V + + I S G + I+ F +F ++ +R Sbjct: 1 MNKAQLIEAVADKLAASKKDAGDAVDAVLDAIIASVASGTKVSITGFGSFEKVKRPARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ FKA K + D Sbjct: 61 RNPRTGESVKVKASSAPKFKAGQGFKDMVNGD 92 >gi|227824814|ref|ZP_03989646.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21] gi|226905313|gb|EEH91231.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21] Length = 91 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ ++ + + +KD+ + V + + ++ + + +++ F TF + + +R G Sbjct: 1 MNKSELISEVASKTAMPKKDAEKAVNAFIDTVKEAIAQKDKVQLIGFGTFEARVRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T + +KI V FKA K + Sbjct: 61 KNPRTGETIKIKKATVPAFKAGKAFKDAVNK 91 >gi|94707|pir||S12888 DNA-binding protein II - Thermus aquaticus gi|227284|prf||1701290A DNA binding protein II Length = 95 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 49/92 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T++DLV +++ GL D V L ++ ++ G ++++ F TF V+++ +R Sbjct: 4 KTVTKADLVDQVAQATGLKLLDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G T +++KI + FK LK ++ Sbjct: 64 TGVKPGTKEKIKIPATQYPAFKPGKALKDKVK 95 >gi|68250247|ref|YP_249359.1| integration host factor subunit beta [Haemophilus influenzae 86-028NP] gi|148825815|ref|YP_001290568.1| integration host factor subunit beta [Haemophilus influenzae PittEE] gi|81335332|sp|Q4QJU8|IHFB_HAEI8 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|166918548|sp|A5UBN4|IHFB_HAEIE RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|68058446|gb|AAX88699.1| integration host factor beta-subunit [Haemophilus influenzae 86-028NP] gi|148715975|gb|ABQ98185.1| integration host factor beta-subunit [Haemophilus influenzae PittEE] gi|309972959|gb|ADO96160.1| Integration host factor, beta-subunit [Haemophilus influenzae R2846] Length = 94 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +K+ LS K+ V + I S G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLSAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|322385064|ref|ZP_08058714.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100] gi|321270974|gb|EFX53884.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100] Length = 91 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91 >gi|308271747|emb|CBX28355.1| Integration host factor subunit beta [uncultured Desulfobacterium sp.] Length = 92 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +I + +S+ ++ R V F+ + D+ G+ I+I +F+VK S G Sbjct: 1 MNKLELISAIKDKANISKAEAARVVQIFFDSMTDAMANGDRIEIRGLCSFYVKNYKSYAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V I P+++ FK+ LK+R+ Sbjct: 61 RNPKTGKKVVIKPKKLPFFKSGKELKERV 89 >gi|218961276|ref|YP_001741051.1| HU, DNA-binding transcriptional regulator, alpha subunit [Candidatus Cloacamonas acidaminovorans] gi|167729933|emb|CAO80845.1| HU, DNA-binding transcriptional regulator, alpha subunit [Candidatus Cloacamonas acidaminovorans] Length = 93 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 51/92 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++R +LVK I+ G S+K ++ +T + I +S +GE + + F +F V + +R G Sbjct: 1 MSRDELVKKIAANAGTSQKVASAALTAVLEGITESLKKGEKVSLVGFGSFSVAHRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N +T + +KI R V VFKA LK+ + Sbjct: 61 INPKTKKPLKIPARNVPVFKAGKNLKEAVKKA 92 >gi|94502166|ref|ZP_01308664.1| DNA-binding protein HU [Oceanobacter sp. RED65] gi|94425691|gb|EAT10701.1| DNA-binding protein HU [Oceanobacter sp. RED65] Length = 76 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%) Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78 + + + R + + I ++ G+ + + F TF VK++ +R GRN QT Q ++I Sbjct: 1 DIPKAAAGRALDATVDAITNALKEGDQVVLVGFGTFAVKERAARTGRNPQTGQPIEIAAA 60 Query: 79 RVVVFKASSILKKRIM 94 +V FK LK + Sbjct: 61 KVPGFKPGKALKDAVN 76 >gi|237746993|ref|ZP_04577473.1| integration host factor subunit beta [Oxalobacter formigenes HOxBLS] gi|229378344|gb|EEO28435.1| integration host factor subunit beta [Oxalobacter formigenes HOxBLS] Length = 97 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ S++ + L KD+ V T+ + + D+ G+ I+I F +F + + R+ Sbjct: 1 MTKSELIVSLANSYPQLLAKDAELTVKTILDAMADALADGQRIEIRGFGSFALSVRPPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ ++V ++ +RV FK L++R+ + Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRVDTAAK 95 >gi|325274256|ref|ZP_08140370.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] gi|324100618|gb|EGB98350.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] Length = 92 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ LV ++++ GL++ +++ V T+ + I + V +I + F F V + +R G Sbjct: 1 MSKAVLVGLVAEKHGLTKAEASEIVNTVLSGIQSALVSQGSISLVGFGVFSVVDRAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + V + R+ V F LK+ + Sbjct: 61 RNPNTGEPVTVAARKAVRFTPGEPLKRAVN 90 >gi|307706517|ref|ZP_07643324.1| DNA-binding protein HU [Streptococcus mitis SK321] gi|322376730|ref|ZP_08051223.1| DNA-binding protein HU [Streptococcus sp. M334] gi|307617972|gb|EFN97132.1| DNA-binding protein HU [Streptococcus mitis SK321] gi|321282537|gb|EFX59544.1| DNA-binding protein HU [Streptococcus sp. M334] Length = 91 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91 >gi|296135611|ref|YP_003642853.1| histone family protein DNA-binding protein [Thiomonas intermedia K12] gi|294339747|emb|CAZ88109.1| DNA-binding protein HU-beta (NS1) (HU-1) [Thiomonas sp. 3As] gi|295795733|gb|ADG30523.1| histone family protein DNA-binding protein [Thiomonas intermedia K12] Length = 90 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++ L++ + R + L + + + +G+++ + F TF V ++ +R G Sbjct: 1 MNKAELIEHMANNADLNKAQAGRALDALIDAVRRTLKKGDSVSLIGFGTFAVTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI ++ F+ LK I Sbjct: 61 RNPRTGAAIKIKAAKIPKFRPGKGLKDAIK 90 >gi|218961994|ref|YP_001741769.1| DNA-binding protein HU (DNA-binding protein II) (TL29) [Candidatus Cloacamonas acidaminovorans] gi|167730651|emb|CAO81563.1| DNA-binding protein HU (DNA-binding protein II) (TL29) [Candidatus Cloacamonas acidaminovorans] Length = 95 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 53/91 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLVK IS+ G+ RKD V L I DS +G I+I F TF +K + RVG Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T+Q+V + R V FK S K +++ Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVN 91 >gi|218247718|ref|YP_002373089.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|257060945|ref|YP_003138833.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] gi|218168196|gb|ACK66933.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8801] gi|256591111|gb|ACV01998.1| histone family protein DNA-binding protein [Cyanothece sp. PCC 8802] Length = 95 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ + +K + ++ I ++ + + + F +F + + +R G Sbjct: 1 MNKGELIDAVAERAQVPKKQAEAVISATIETIMEAVSSEDKVTLVGFGSFEARDRKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+++ I +V F A K ++ Sbjct: 61 RNPKTNEKMVIPATKVPAFSAGKQFKTKVA 90 >gi|169633383|ref|YP_001707119.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter baumannii SDF] gi|169796131|ref|YP_001713924.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter baumannii AYE] gi|184157940|ref|YP_001846279.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|213157135|ref|YP_002319180.1| integration host factor, beta subunit [Acinetobacter baumannii AB0057] gi|215483585|ref|YP_002325806.1| integration host factor, beta subunit [Acinetobacter baumannii AB307-0294] gi|239502183|ref|ZP_04661493.1| integration host factor, beta subunit [Acinetobacter baumannii AB900] gi|260555181|ref|ZP_05827402.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC 19606] gi|301345930|ref|ZP_07226671.1| integration host factor, beta subunit [Acinetobacter baumannii AB056] gi|301510601|ref|ZP_07235838.1| integration host factor, beta subunit [Acinetobacter baumannii AB058] gi|301597404|ref|ZP_07242412.1| integration host factor, beta subunit [Acinetobacter baumannii AB059] gi|332851785|ref|ZP_08433710.1| integration host factor, beta subunit [Acinetobacter baumannii 6013150] gi|332865835|ref|ZP_08436619.1| integration host factor, beta subunit [Acinetobacter baumannii 6013113] gi|332872777|ref|ZP_08440743.1| integration host factor, beta subunit [Acinetobacter baumannii 6014059] gi|169149058|emb|CAM86935.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter baumannii AYE] gi|169152175|emb|CAP01078.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter baumannii] gi|183209534|gb|ACC56932.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii ACICU] gi|193077208|gb|ABO12000.2| integration host factor beta subunit [Acinetobacter baumannii ATCC 17978] gi|213056295|gb|ACJ41197.1| integration host factor, beta subunit [Acinetobacter baumannii AB0057] gi|213986032|gb|ACJ56331.1| integration host factor, beta subunit [Acinetobacter baumannii AB307-0294] gi|260411723|gb|EEX05020.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC 19606] gi|322508259|gb|ADX03713.1| himD [Acinetobacter baumannii 1656-2] gi|323517885|gb|ADX92266.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715] gi|332729792|gb|EGJ61127.1| integration host factor, beta subunit [Acinetobacter baumannii 6013150] gi|332735047|gb|EGJ66132.1| integration host factor, beta subunit [Acinetobacter baumannii 6013113] gi|332739074|gb|EGJ69935.1| integration host factor, beta subunit [Acinetobacter baumannii 6014059] Length = 100 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V + + V FK L+ + + + Sbjct: 63 PRVGRNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK 100 >gi|108759553|ref|YP_633781.1| integration host factor subunit beta [Myxococcus xanthus DK 1622] gi|108463433|gb|ABF88618.1| integration host factor, beta subunit [Myxococcus xanthus DK 1622] Length = 117 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F + D+ RGE I+I FHVK G Sbjct: 1 MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T Q + + P+R ++F+ L+ R+ Sbjct: 61 RNPKTGQVIPVKPKRGLLFRTGKELRDRVN 90 >gi|308049131|ref|YP_003912697.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] gi|307631321|gb|ADN75623.1| histone family protein DNA-binding protein [Ferrimonas balearica DSM 9799] Length = 93 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R L+K +++ +S+ + R + L N I + GE + + F V+ R G Sbjct: 1 MNRQQLIKRMAELSEMSQAECKRVLAALENTIAQALHEGETVYLPPLGVFEVRHHLPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I R V FKA++ LKK + + Sbjct: 61 RNPQTGETIEIPLRTVPAFKAAAPLKKAVAE 91 >gi|304415503|ref|ZP_07396140.1| integration host factor (IHF) DNA-binding protein beta subunit [Candidatus Regiella insecticola LSR1] gi|304282642|gb|EFL91168.1| integration host factor (IHF) DNA-binding protein beta subunit [Candidatus Regiella insecticola LSR1] Length = 100 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+K + K +S KD V +F + + +G I+I F +F + + +R Sbjct: 1 MNKSELIKRLHKRLSHMSFKDVDESVGEIFRFMIATLAKGNRIEIRGFGSFCLHYRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN +T + V++ + V FK L+ + R Sbjct: 61 GRNPKTGEPVELPSKYVAHFKPGKDLRAGVDSAAR 95 >gi|302035809|ref|YP_003796131.1| integration host factor subunit beta [Candidatus Nitrospira defluvii] gi|300603873|emb|CBK40205.1| Integration host factor, beta subunit [Candidatus Nitrospira defluvii] Length = 92 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ +++ +S++ L+++ + V T+F+ I DS G +I F +F ++ + + Sbjct: 1 MTKAQIIERVSEQVTTLTKRQAEIVVNTIFDCIRDSLRNGNKTEIRGFGSFRLRARRMKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + +RV FKA LK+ + Sbjct: 61 GRNPKTGATVAVPAKRVPFFKAGKELKELLNK 92 >gi|257091641|ref|YP_003165284.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048650|gb|ACV37837.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 103 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRSDL+ ++ F L KD+ V + + I + +G+ ++I F +F + + +R Sbjct: 1 MTRSDLITVLASRFPSLVAKDAEIAVKEILDAIGIALAQGDRVEIRGFGSFRLNYRPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN ++ + V + + V F+AS +++R+ ++ Sbjct: 61 GRNPKSGEPVAVAEKYVPHFQASKEMRERVEQSVK 95 >gi|289163419|ref|YP_003453557.1| integration host factor, beta subunit [Legionella longbeachae NSW150] gi|288856592|emb|CBJ10397.1| putative integration host factor, beta subunit [Legionella longbeachae NSW150] Length = 102 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ L+ K V + + D+ ++ + I+I F +F + + R Sbjct: 1 MIKSELIEHIASRMTHLTEKQVADGVNRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 N +T ++V + FK L++R+ + ++ Sbjct: 61 AHNPKTGEKVVTTAKYSPHFKPGKELRERVDASRDKYELPEE 102 >gi|329118112|ref|ZP_08246824.1| integration host factor subunit alpha [Neisseria bacilliformis ATCC BAA-1200] gi|327465772|gb|EGF12045.1| integration host factor subunit alpha [Neisseria bacilliformis ATCC BAA-1200] Length = 95 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 LV +SK +S+ D+ V F EI + RGE IKIS F F ++ K R GRN +T Sbjct: 5 LVDKVSK---VSKNDAKEIVELFFEEIRTTLARGEEIKISGFGNFQLRDKPQRPGRNPKT 61 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 +EV I RRVV F AS LK + Sbjct: 62 GEEVPITARRVVTFHASQKLKGMVE 86 >gi|315419707|gb|ADU15823.1| histone-like protein [Streptococcus parasanguinis] Length = 91 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK + Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALKDAVK 91 >gi|118475521|ref|YP_892021.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40] gi|118414747|gb|ABK83167.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40] Length = 104 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 48/95 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++ V ++ + GL++KD+ + I + +G+++ F TF V ++ +R Sbjct: 1 MTKAEFVGLVASKAGLTKKDTELALDGFLGSISEVLTKGDSVTFVGFGTFGVTERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 + T +E+K+ ++ V FK LK + G Sbjct: 61 KVPSTGKEIKVPAKKAVKFKVGKNLKDAVASAGCG 95 >gi|329889489|ref|ZP_08267832.1| integration host factor subunit alpha [Brevundimonas diminuta ATCC 11568] gi|328844790|gb|EGF94354.1| integration host factor subunit alpha [Brevundimonas diminuta ATCC 11568] Length = 91 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 57/86 (66%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71 +++ +E GLSR++ + V + I DS +GE +K+S F F V++K +R+GRN +T + Sbjct: 3 EAVHEEVGLSRQECSGLVERTLDLIVDSLEQGETVKLSGFGVFQVREKRARMGRNPKTGE 62 Query: 72 EVKIDPRRVVVFKASSILKKRIMDDM 97 I+PRRV+ F+AS I+K R+ D + Sbjct: 63 PAAINPRRVISFRASQIMKSRVHDAV 88 >gi|332702002|ref|ZP_08422090.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332552151|gb|EGJ49195.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 120 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 55/96 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++KT+T++++V I ++ L+R + V TL + + S R ++ IS F F K Sbjct: 21 LNKTLTKAEIVDYIYEKTDLNRAEIKAHVETLLDIMKQSIKRDHSLLISGFGKFEAYDKR 80 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R GRN QTN+ + + PR+VVVF+ S + + + Sbjct: 81 ARKGRNPQTNETITLPPRKVVVFRLSRKFRGELNGE 116 >gi|327250473|gb|EGE62183.1| DNA-binding protein HU-alpha [Escherichia coli STEC_7v] Length = 90 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 41/82 (50%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 I+++ LS+ + + + I +S G+A+++ F TF V + R GRN QT +E Sbjct: 9 QIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKE 68 Query: 73 VKIDPRRVVVFKASSILKKRIM 94 +KI V F + LK + Sbjct: 69 IKIAAANVPAFVSGKALKDAVK 90 >gi|296121526|ref|YP_003629304.1| histone family protein DNA-binding protein [Planctomyces limnophilus DSM 3776] gi|296013866|gb|ADG67105.1| histone family protein DNA-binding protein [Planctomyces limnophilus DSM 3776] Length = 171 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++VK+IS E GL++ + V F+ I ++ V I++ +F F VK++ +R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +V + + VV FK +++++ Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVRQ 91 >gi|262340839|ref|YP_003283694.1| DNA-binding protein HU-beta [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272176|gb|ACY40084.1| DNA-binding protein HU-beta [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 88 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV SI+++ G+++ + + +S +G+ + + F TF V ++ R G Sbjct: 1 MNKTELVNSIAEKTGITKIKAKNVTDAFIETVIESLKKGDKVTLVGFGTFSVVERHPRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T +++ I ++V FK + L Sbjct: 61 VNPRTGKKIHIPGKKVAKFKIGAEL 85 >gi|226227080|ref|YP_002761186.1| DNA-binding protein [Gemmatimonas aurantiaca T-27] gi|226090271|dbj|BAH38716.1| DNA-binding protein [Gemmatimonas aurantiaca T-27] Length = 110 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%) Query: 5 ITRSDLVK----SISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T++DLV+ I++ G +S+KD R V + I ++ + I++ F TF ++Q Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + +R+ RN +T V++ R V VFK S L+ + Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMVAG 97 >gi|218280828|ref|ZP_03487461.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989] gi|218217859|gb|EEC91397.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989] Length = 94 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 53/94 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS I + DL + +++EFG S+KD+T +V +F+ + D+ + + F F + ++ Sbjct: 1 MSNVINKKDLAEKLAEEFGCSKKDATAYVQFVFDTVADTLKDNGTVDVFGFGKFSISERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R G N T ++++I + V FKAS LK + Sbjct: 61 ARTGINPATKEKIEIAASKSVKFKASKALKDAVK 94 >gi|295112033|emb|CBL28783.1| bacterial nucleoid protein Hbs [Synergistetes bacterium SGP1] Length = 100 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +I+++ L +KD V +F I + RGE F F VK++ +R G Sbjct: 1 MTKAELIDAIAEKLLLKKKDVVPVVEEVFASIEGALSRGEKCTFVGFGVFEVKERAAREG 60 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN Q + VKI ++V VF+ LK++++ ++G+K K Sbjct: 61 RNPQDPTKVVKIPAKKVPVFRPGKDLKEKVL-AIKGKKKAK 100 >gi|283852806|ref|ZP_06370069.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|283571798|gb|EFC19795.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] Length = 91 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++D++ I G+ ++ ++ + + + I DS V GEA+ ++ F TF V ++ +R Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQDSLVSGEALTLTGFGTFKVSERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GR+ +T + I + V F LK + Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAVK 91 >gi|149376912|ref|ZP_01894667.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola DG893] gi|149358804|gb|EDM47273.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola DG893] Length = 90 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +++ + GLSR ++ +T ++I +A RGE + F TF+++ + +R G Sbjct: 1 MRKPELAAAVADKTGLSRDKASEVITAFTDQISAAAARGEDTTLIGFGTFNIRSREARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT +KI + V FKA LK I Sbjct: 61 RNPQTGATIKIPASKTVGFKAGKALKDSI 89 >gi|158340410|ref|YP_001521766.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] gi|158310651|gb|ABW32265.1| DNA-binding protein HU [Acaryochloris marina MBIC11017] Length = 91 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV I+ G+++K + +T L I ++ G+ + F +F + + +R G Sbjct: 1 MNKGELVDEIADNAGVTKKQADTILTALTETIMETVSSGDKDSLVGFGSFEARDRKARDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +++KI + VF A + K+++ Sbjct: 61 RNPRTGKKLKIPATKAPVFSAGKVFKEKVKG 91 >gi|148259931|ref|YP_001234058.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|326403115|ref|YP_004283196.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] gi|146401612|gb|ABQ30139.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|325049976|dbj|BAJ80314.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] Length = 87 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DLV ++++ LS+ +T V +F I ++ R E +++ F TF ++ + GRN + Sbjct: 2 DLVADVAEKTDLSKAKATEVVDAVFAAIEEALKRKEEVRLVGFGTFGTAERKAATGRNPR 61 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIM 94 T +E++I V FK LK + Sbjct: 62 TGEEIQIAASTSVRFKPGKSLKDAVN 87 >gi|270158045|ref|ZP_06186702.1| integration host factor alpha subunit [Legionella longbeachae D-4968] gi|289163687|ref|YP_003453825.1| integration host factor, alpha subunit [Legionella longbeachae NSW150] gi|269990070|gb|EEZ96324.1| integration host factor alpha subunit [Legionella longbeachae D-4968] gi|288856860|emb|CBJ10671.1| putative integration host factor, alpha subunit [Legionella longbeachae NSW150] Length = 97 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 48/92 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++++ + +++ E LS+ S V F E+ + G +K+S F F ++ K R Sbjct: 2 NALSKAIMAETLCDELNLSKPASKEMVENFFEELRHALEHGHHVKLSGFGNFTLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ + RRVV FK LK +I Sbjct: 62 PGRNPKTGEEIPVVARRVVTFKPGLKLKSKIE 93 >gi|261749642|ref|YP_003257328.1| histone-like DNA-binding protein HU-beta [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497735|gb|ACX84185.1| histone-like DNA-binding protein HU-beta [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 88 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV SI+++ G+++ + + +S +G + + F TF V ++ R G Sbjct: 1 MNKTELVNSIAEKTGITKIKAKNVTDAFIETVIESLKKGNKVTLVGFGTFSVVERNPRNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T +++ I ++V FK + L Sbjct: 61 INPRTGKKIHIPGKKVAKFKIGAEL 85 >gi|194291213|ref|YP_002007120.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] gi|193225048|emb|CAQ71059.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] Length = 92 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + + I D+ +G+ + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92 >gi|188584610|ref|YP_001928095.1| integration host factor, beta subunit [Methylobacterium populi BJ001] gi|179348472|gb|ACB83519.1| integration host factor, beta subunit [Methylobacterium populi BJ001] Length = 94 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ + ++ L +D V T+ I + RG+ +++ F F VK + +R Sbjct: 1 MIKSELILRLVEQNPHLYARDVEAVVNTILETITAAMERGDRVELRGFGAFSVKHREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN ++ V ++ + VF+ L+ ++ D+ Sbjct: 61 GRNPRSGAAVAVEAKTAPVFRPGKELRLKLQDET 94 >gi|293608242|ref|ZP_06690545.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828815|gb|EFF87177.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122026|gb|ADY81549.1| integration host factor (IHF),beta subunit, site specific recombination [Acinetobacter calcoaceticus PHEA-2] Length = 100 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRD 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V++ + V FK L+ + + + Sbjct: 63 PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNESGK 100 >gi|323144308|ref|ZP_08078923.1| integration host factor subunit beta [Succinatimonas hippei YIT 12066] gi|322415899|gb|EFY06618.1| integration host factor subunit beta [Succinatimonas hippei YIT 12066] Length = 92 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR+DL+ S I++ + + V +F ++ ++ +GE I+I F +F V+ + R+ Sbjct: 1 MTRADLINSLIARYRDIPPSQIDKSVREIFEQMIETLSQGERIEIRGFGSFEVRLREPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + V + R+VV FK L+ R+ Sbjct: 61 AHNPKTGERVDLPARKVVHFKPGVELRNRVN 91 >gi|71907345|ref|YP_284932.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71846966|gb|AAZ46462.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 90 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ SI+ + +S+ + R + I + G+++ + F TF+V ++ +R G Sbjct: 1 MNKTDLIDSIAAQADISKAAAGRALDAAVESIKGALKAGDSVSLIGFGTFYVGERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T + ++I + F+ LK Sbjct: 61 RNPRTGKTLEIKAAKQPKFRPGKGLKDA 88 >gi|194336405|ref|YP_002018199.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308882|gb|ACF43582.1| histone family protein DNA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 91 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ LV+ I+ + LS+ D+ R + + DS G + ++ F TF + + R G Sbjct: 1 MSKNALVEKIADQAQLSKIDADRALKAFVTIVSDSLKNGVDVPLAGFGTFTIVDRAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T + + I ++VV FK LK Sbjct: 61 RNPMTGEAITIAAKKVVKFKPGKALK 86 >gi|153003612|ref|YP_001377937.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. Fw109-5] gi|152027185|gb|ABS24953.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 126 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 54/103 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F+ + D+ RGE I+I FHVK G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RN +T + + + P+R ++F+ L+ R+ K + D Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPEALAKPLEPDT 103 >gi|159900715|ref|YP_001546962.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] gi|159893754|gb|ABX06834.1| histone family protein DNA-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 95 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + + +++ G+S+K++ R V + + + + GE + ++ F TF V+++ +R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N +T + + I+ + F AS+ LK + Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVRQGKP 94 >gi|296238979|gb|ADH01502.1| histone family protein DNA-binding protein [Pseudomonas sp. 2663] Length = 92 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ G S+ ++ + L I + + +++ F F Q+ +R+G Sbjct: 1 MNKQELIDAVAASTGASKTATSEVIQALLEVITHAVSADDTVQLIGFGAFSQGQRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+ I + V F A K + Sbjct: 61 RNPTTGAEIAIAAAKTVKFIAGKAFKDAVN 90 >gi|260903510|ref|ZP_05911905.1| integration host factor, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308107614|gb|EFO45154.1| integration host factor, beta subunit [Vibrio parahaemolyticus AQ4037] Length = 82 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 42/80 (52%) Query: 15 SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVK 74 +++ LS K+ V + + + G+ I+I F +F + + RVGRN +T +V+ Sbjct: 1 AEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRVGRNPKTGDKVE 60 Query: 75 IDPRRVVVFKASSILKKRIM 94 ++ + V FK L++R+ Sbjct: 61 LEGKYVPHFKPGKELRERVN 80 >gi|219128513|ref|XP_002184456.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404257|gb|EEC44205.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 90 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 46/89 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++D V +++++ G ++K+S + + + + G+ + + F +F +K + +R GRN Sbjct: 1 KADFVTALAEQTGQTKKESEGTLQAVLDILQAQVSEGKKVTLPGFGSFVLKSRAARKGRN 60 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 QT +E++I + F S K + Sbjct: 61 PQTGEEMQIAASKSPGFTPSKAWKDMVNG 89 >gi|289167992|ref|YP_003446261.1| histone-like protein [Streptococcus mitis B6] gi|288907559|emb|CBJ22396.1| histone-like protein [Streptococcus mitis B6] Length = 91 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91 >gi|270292588|ref|ZP_06198799.1| DNA-binding protein HU [Streptococcus sp. M143] gi|293365596|ref|ZP_06612305.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|306829650|ref|ZP_07462840.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249] gi|307703547|ref|ZP_07640489.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|315613311|ref|ZP_07888220.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296] gi|322375383|ref|ZP_08049896.1| DNA-binding protein HU [Streptococcus sp. C300] gi|331266215|ref|YP_004325845.1| histone-like protein [Streptococcus oralis Uo5] gi|270278567|gb|EFA24413.1| DNA-binding protein HU [Streptococcus sp. M143] gi|291315964|gb|EFE56408.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|304428736|gb|EFM31826.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249] gi|307622954|gb|EFO01949.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037] gi|315314546|gb|EFU62589.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296] gi|315419705|gb|ADU15822.1| histone-like protein [Streptococcus oralis] gi|321279646|gb|EFX56686.1| DNA-binding protein HU [Streptococcus sp. C300] gi|326682887|emb|CBZ00504.1| histone-like protein [Streptococcus oralis Uo5] Length = 91 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91 >gi|296876928|ref|ZP_06900973.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912] gi|296432059|gb|EFH17861.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912] Length = 91 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK+ + Sbjct: 63 NPQTGKEIEIAASKVPAFKAGKALKEAVK 91 >gi|78224250|ref|YP_385997.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78195505|gb|ABB33272.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 97 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL I + +K++ V + + D+ +KIS F F V+QK R G Sbjct: 1 MTKADLADKIQERISCQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN QT + + I R+V+ FK S ILK RI + Sbjct: 61 RNPQTGETITISSRKVLTFKPSVILKNRINSSL 93 >gi|325679104|ref|ZP_08158698.1| DNA-binding protein HU-beta [Ruminococcus albus 8] gi|324109228|gb|EGC03450.1| DNA-binding protein HU-beta [Ruminococcus albus 8] Length = 92 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ G ++K++ + + + I ++ +G+ + I F TF V+ + ++ Sbjct: 1 MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGDKVAIPGFGTFEVRDRAAKKS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + + ++V FKA+ LK + Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALKDAVDK 91 >gi|125717537|ref|YP_001034670.1| DNA-binding protein HU [Streptococcus sanguinis SK36] gi|323352711|ref|ZP_08087681.1| DNA-binding protein HU [Streptococcus sanguinis VMC66] gi|125497454|gb|ABN44120.1| DNA-binding protein HU, putative [Streptococcus sanguinis SK36] gi|322121747|gb|EFX93493.1| DNA-binding protein HU [Streptococcus sanguinis VMC66] gi|324990641|gb|EGC22577.1| DNA-binding protein HU [Streptococcus sanguinis SK353] gi|324993379|gb|EGC25299.1| DNA-binding protein HU [Streptococcus sanguinis SK405] gi|324995308|gb|EGC27220.1| DNA-binding protein HU [Streptococcus sanguinis SK678] gi|325688248|gb|EGD30267.1| DNA-binding protein HU [Streptococcus sanguinis SK72] gi|325690171|gb|EGD32175.1| DNA-binding protein HU [Streptococcus sanguinis SK115] gi|325694095|gb|EGD36013.1| DNA-binding protein HU [Streptococcus sanguinis SK150] gi|325697097|gb|EGD38984.1| DNA-binding protein HU [Streptococcus sanguinis SK160] gi|327458737|gb|EGF05085.1| DNA-binding protein HU [Streptococcus sanguinis SK1057] gi|327461654|gb|EGF07985.1| DNA-binding protein HU [Streptococcus sanguinis SK1] gi|327468999|gb|EGF14471.1| DNA-binding protein HU [Streptococcus sanguinis SK330] gi|327473374|gb|EGF18794.1| DNA-binding protein HU [Streptococcus sanguinis SK408] gi|327489507|gb|EGF21300.1| DNA-binding protein HU [Streptococcus sanguinis SK1058] gi|328945552|gb|EGG39703.1| DNA-binding protein HU [Streptococcus sanguinis SK1087] gi|332361741|gb|EGJ39545.1| DNA-binding protein HU [Streptococcus sanguinis SK1056] gi|332362906|gb|EGJ40699.1| DNA-binding protein HU [Streptococcus sanguinis SK49] gi|332363445|gb|EGJ41228.1| DNA-binding protein HU [Streptococcus sanguinis SK355] gi|332366058|gb|EGJ43814.1| DNA-binding protein HU [Streptococcus sanguinis SK1059] Length = 91 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91 >gi|330994052|ref|ZP_08317982.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1] gi|329758998|gb|EGG75512.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1] Length = 95 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 45/95 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + +LV ++++E L++ + V +F I + + +++ F TF + Sbjct: 1 MEKPLNKQELVAAVAEEADLAKAKAGEVVDAVFGAIEKALASKQEVRLVGFGTFVTATRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + GRN +T + + I V FK LK+ + Sbjct: 61 AAKGRNPRTGEPLDIPASTSVRFKPGKNLKEAVSK 95 >gi|302344529|ref|YP_003809058.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301641142|gb|ADK86464.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 93 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++D++ + L++ ++ + I ++ G+ + +S F + V+ K R Sbjct: 2 TLTKADIIARVYANGQLTKAEAADSIEESLRLIKEALGSGDEVLVSGFGKWSVRDKNQRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + + PRRVV F+ S +LK +I Sbjct: 62 GRNPQTGDPLTLPPRRVVTFRPSRVLKAKIQ 92 >gi|239905786|ref|YP_002952525.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239795650|dbj|BAH74639.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 91 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++D++ I G+ ++ ++ + + + I +S V GEA+ ++ F TF V ++ +R Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQESLVGGEALTLTGFGTFKVSERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GR+ +T + I + V F LK + Sbjct: 61 GRDPRTGNPIDIPASKAVRFTPGKTLKDAVK 91 >gi|242278247|ref|YP_002990376.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242121141|gb|ACS78837.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 90 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ LVK I ++ LS KD++ + + + I D + ++ F TF ++ +R G Sbjct: 1 MSKTVLVKKIREKLELSAKDASAALDGVLSAIEDGLKEEGNVTLTGFGTFKTVERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++I R V F LK + Sbjct: 61 RNPQTGEAIQIPASRGVKFTPGKFLKDAVK 90 >gi|58979367|gb|AAW83348.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979385|gb|AAW83357.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979387|gb|AAW83358.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979389|gb|AAW83359.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979391|gb|AAW83360.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979397|gb|AAW83363.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979421|gb|AAW83375.1| DNA-binding protein HU [Campylobacter jejuni] Length = 98 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + +K+ RV FK LK+ + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >gi|270158339|ref|ZP_06186996.1| integration host factor, beta subunit [Legionella longbeachae D-4968] gi|269990364|gb|EEZ96618.1| integration host factor, beta subunit [Legionella longbeachae D-4968] Length = 109 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ L+ K V + + D+ ++ + I+I F +F + + R Sbjct: 8 MIKSELIEHIASRMTHLTEKQVADGVNRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 N +T ++V + FK L++R+ + ++ Sbjct: 68 AHNPKTGEKVVTTAKYSPHFKPGKELRERVDASRDKYELPEE 109 >gi|269218721|ref|ZP_06162575.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str. F0332] gi|269211832|gb|EEZ78172.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str. F0332] Length = 95 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +I R++L+ I+++ LS+ D+ + V L + + DS +GEA+KI+ ++ Sbjct: 1 MGMSINRTELIAKIAEKANLSKTDADKAVAALQDVLVDSLSKGEAVKITGLLAVERTERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN +T +E++I V A S LKK + + Sbjct: 61 ARKGRNPRTGEEIQIPAGYGVKLTAGSALKKAVTE 95 >gi|262375355|ref|ZP_06068588.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145] gi|262309609|gb|EEY90739.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145] Length = 101 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V++ + V FK L+ + + + Sbjct: 63 PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNESAQ 100 >gi|319944338|ref|ZP_08018612.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599] gi|319742299|gb|EFV94712.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599] Length = 93 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +IS E +S+ + R +T+ N I + G+ + + F TFH ++ SR G Sbjct: 1 MNKSELIDTISSEADISKAAAERALTSAMNAIMKAVAEGDRVTLVGFGTFHASKRASRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N +T ++++I V F + K Sbjct: 61 LNPRTGEKIEIAAANVPKFTPGAAFKDAANKA 92 >gi|94312469|ref|YP_585679.1| HU family DNA-binding protein [Cupriavidus metallidurans CH34] gi|93356321|gb|ABF10410.1| histone-like DNA-binding protein (HU) [Cupriavidus metallidurans CH34] Length = 92 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + I D+ +GE + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLGAIMDAVAKGETLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92 >gi|332827350|gb|EGK00110.1| hypothetical protein HMPREF9455_03576 [Dysgonomonas gadei ATCC BAA-286] Length = 88 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ GLS+ DS + + + G + + F TF V QK +R G Sbjct: 1 MNKTELINAIAEKSGLSKVDSKKALEAFIESVTGEVKAGGKVALVGFGTFSVTQKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T + I ++ V FKA + L Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85 >gi|152979211|ref|YP_001344840.1| integration host factor, beta subunit [Actinobacillus succinogenes 130Z] gi|171704341|sp|A6VPK8|IHFB_ACTSZ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|150840934|gb|ABR74905.1| integration host factor, beta subunit [Actinobacillus succinogenes 130Z] Length = 94 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ ++K+ +S K V + ++ S + I+I F +F + + R+ Sbjct: 1 MTKSELIELLAKKNPSISTKIVENSVKEILEQMSGSLENSDRIEIRGFGSFSLHYRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKCVPHFKAGKELKERV 90 >gi|22299810|ref|NP_683057.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1] gi|22295994|dbj|BAC09819.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1] Length = 111 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 5 ITRSDLVKSISKEF----GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++LV ++ +++K ++ EI ++ +GE + + F F +++ Sbjct: 4 MNKAELVDAVFNRAHSANNVTKKQVEAIISATVEEIMEAVAKGEKVTLVGFGAFERRERK 63 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 +R GRN +T ++++I V F A + K+ Sbjct: 64 AREGRNPKTKEKMQIPATNVPAFSAGKLFKE 94 >gi|317055654|ref|YP_004104121.1| histone family protein DNA-binding protein [Ruminococcus albus 7] gi|315447923|gb|ADU21487.1| histone family protein DNA-binding protein [Ruminococcus albus 7] Length = 92 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ G ++K++ + + + I ++ +GE + I F TF V+ + ++ Sbjct: 1 MKKAELLAAIAEKNGSTKKNAEAALDAVISTITEALEKGEKVAIPGFGTFEVRDRAAKKS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + + ++V FKA+ LK + Sbjct: 61 INPATKEPIDVPAKKVPAFKAAKALKDAVDK 91 >gi|319947464|ref|ZP_08021696.1| DNA-binding protein HU [Streptococcus australis ATCC 700641] gi|315419725|gb|ADU15832.1| histone-like protein [Streptococcus parasanguinis] gi|319746404|gb|EFV98665.1| DNA-binding protein HU [Streptococcus australis ATCC 700641] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91 >gi|85859156|ref|YP_461358.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85722247|gb|ABC77190.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 90 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ I++E G+++ +++ + + N + + + + F TF V + +R G Sbjct: 1 MTKAELISVIAEEAGITKASASKALESYVNTVAKELNKTGKLGLVGFGTFSVVMREAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +KI ++VV FK L ++I Sbjct: 61 RNPQTGDIIKIPAKKVVKFKPGKELSEKIK 90 >gi|315419717|gb|ADU15828.1| histone-like protein [Streptococcus anginosus] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E+ I +V FKA LK I Sbjct: 63 NPQTGAEITIAASKVPTFKAGKALKDVIK 91 >gi|283954472|ref|ZP_06371992.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414] gi|283794089|gb|EFC32838.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414] Length = 98 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 51/97 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R T + +K+ RVV FK LK+ + +K Sbjct: 61 RVPSTGKTIKVPATRVVKFKVGKNLKEAVAKASGKKK 97 >gi|260550113|ref|ZP_05824327.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] gi|260406868|gb|EEX00347.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624] Length = 100 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V + + V FK L+ + + + Sbjct: 63 PRVGRNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK 100 >gi|221486645|gb|EEE24906.1| DNA-binding protein HU, putative [Toxoplasma gondii GT1] Length = 235 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 55/106 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TR DLV S++ E + R + + V+ I S +G+ + +S F + ++++G Sbjct: 118 GSAVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGE 177 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RV RN +T +++ + F S +LK ++ + + + +++D Sbjct: 178 RVARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223 >gi|117924222|ref|YP_864839.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] gi|117607978|gb|ABK43433.1| HU family DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +L K ++ + G+S+ D+ R V I +S + + + F TF V ++ +R G Sbjct: 1 MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +++ I R + FKA L++++ Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVNG 91 >gi|22536684|ref|NP_687535.1| DNA-binding protein HU [Streptococcus agalactiae 2603V/R] gi|25010620|ref|NP_735015.1| DNA-binding protein HU [Streptococcus agalactiae NEM316] gi|76786815|ref|YP_329238.1| DNA-binding protein HU [Streptococcus agalactiae A909] gi|77405315|ref|ZP_00782411.1| DNA-binding protein HU [Streptococcus agalactiae H36B] gi|77414015|ref|ZP_00790187.1| DNA-binding protein HU [Streptococcus agalactiae 515] gi|22533525|gb|AAM99407.1|AE014215_1 DNA-binding protein HU [Streptococcus agalactiae 2603V/R] gi|23094974|emb|CAD46195.1| HU like DNA-binding protein [Streptococcus agalactiae NEM316] gi|76561872|gb|ABA44456.1| DNA-binding protein HU [Streptococcus agalactiae A909] gi|77159941|gb|EAO71080.1| DNA-binding protein HU [Streptococcus agalactiae 515] gi|77176110|gb|EAO78883.1| DNA-binding protein HU [Streptococcus agalactiae H36B] gi|319744552|gb|EFV96905.1| DNA-binding protein HU [Streptococcus agalactiae ATCC 13813] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT E++I +V FKA LK + Sbjct: 63 NPQTGAEIEIAASKVPAFKAGKALKDAVK 91 >gi|19912729|dbj|BAB88647.1| histone-like protein [Streptococcus intermedius] gi|187936837|dbj|BAG32216.1| histone-like DNA binding protein [Streptococcus intermedius] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDAVK 91 >gi|255320505|ref|ZP_05361686.1| integration host factor, beta subunit [Acinetobacter radioresistens SK82] gi|262378397|ref|ZP_06071554.1| integration host factor, beta subunit [Acinetobacter radioresistens SH164] gi|255302477|gb|EET81713.1| integration host factor, beta subunit [Acinetobacter radioresistens SK82] gi|262299682|gb|EEY87594.1| integration host factor, beta subunit [Acinetobacter radioresistens SH164] Length = 101 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V++ + V FK L+ + + Sbjct: 63 PRVGRNPKTGKAVEVAAKAVPHFKPGKALRDAVNESAN 100 >gi|53728750|ref|ZP_00135487.2| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208219|ref|YP_001053444.1| integration host factor subunit beta [Actinobacillus pleuropneumoniae L20] gi|165976155|ref|YP_001651748.1| integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150051|ref|YP_001968576.1| integration host factor beta-subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251469|ref|ZP_07337645.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252342|ref|ZP_07338508.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245599|ref|ZP_07527685.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247719|ref|ZP_07529757.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249952|ref|ZP_07531924.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252295|ref|ZP_07534192.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254555|ref|ZP_07536389.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256762|ref|ZP_07538541.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259009|ref|ZP_07540740.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261205|ref|ZP_07542880.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263384|ref|ZP_07545000.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166918536|sp|A3N0A3|IHFB_ACTP2 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709766|sp|B3GXH5|IHFB_ACTP7 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|226709767|sp|B0BP19|IHFB_ACTPJ RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|126097011|gb|ABN73839.1| integration host factor beta-subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876256|gb|ABY69304.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915182|gb|ACE61434.1| integration host factor beta-subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648801|gb|EFL78991.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649701|gb|EFL79881.1| integration host factor, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853301|gb|EFM85520.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855749|gb|EFM87914.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858012|gb|EFM90096.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860217|gb|EFM92233.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862492|gb|EFM94452.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864810|gb|EFM96714.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867033|gb|EFM98890.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868936|gb|EFN00738.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871262|gb|EFN02990.1| Integration host factor subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 93 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+++ +S L K V + +I RGE +++ F +F + + RV Sbjct: 1 MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERV 90 >gi|319900802|ref|YP_004160530.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108] gi|319415833|gb|ADV42944.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108] Length = 88 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E GL++ DS + + + + GE + + F TF V ++ +R+G Sbjct: 1 MNKAELISAMAAEAGLTKADSKKALDAFVVSVTKAMKAGEKVSLVGFGTFAVAERSARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N T + ++I ++VV FK + L Sbjct: 61 INPSTKKPIEIAAKKVVKFKPGAEL 85 >gi|300115489|ref|YP_003762064.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] gi|299541426|gb|ADJ29743.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] Length = 94 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV + E LS+ + R V LF I + ++ F +F V+++ +R G Sbjct: 1 MNKTELVNFVVLEANLSQAVAQRAVNALFQTITGVLSEKGKVNLAGFGSFSVQKRAARSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R+ Q+ + + I + V FK S+ LK+ + R Sbjct: 61 RHPQSGEVIAIQAKSVPTFKPSNALKEIVQQRKR 94 >gi|221508402|gb|EEE33989.1| DNA-binding protein HU, putative [Toxoplasma gondii VEG] Length = 235 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 55/106 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TR DLV S++ E + R + + V+ I S +G+ + +S F + ++++G Sbjct: 118 GSAVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGE 177 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RV RN +T +++ + F S +LK ++ + + + +++D Sbjct: 178 RVARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223 >gi|113869620|ref|YP_728109.1| HU family DNA-binding protein [Ralstonia eutropha H16] gi|113528396|emb|CAJ94741.1| DNA-binding protein HU family [Ralstonia eutropha H16] Length = 92 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++L+ +I+ GL++ + + + + I D+ +GE + + F TF ++G R+ Sbjct: 1 MTKTELIDAIAAGVDGLTKSKAEQALNVTLSAIMDAVAKGETLSLIGFGTFSKGERGERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+K++ + V FKA K + Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92 >gi|258647295|ref|ZP_05734764.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC 51259] gi|260852812|gb|EEX72681.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC 51259] Length = 90 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +I+ GLS+ DS + + I + + + + F TF V ++ + G Sbjct: 1 MNKSELVSAIAASAGLSKVDSKKALDATLEAIAGALKANDKVALLGFGTFAVTERPAHDG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +++ I ++V+ FKA + L + Sbjct: 61 VNPATKEKIHIPAKKVIKFKAGAELSGALN 90 >gi|158521728|ref|YP_001529598.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158510554|gb|ABW67521.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 90 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 +T+S+L+ ++KE G+S+ + + + + + + + E + + F TF ++ +R Sbjct: 1 MTKSELIDKMAKEAGISKVAAGAALNSFMDGVSKALKKKEGKVTLVGFGTFSKVRRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + +KI VV FKA LK I Sbjct: 61 GRNPQTGEPIKIKAGNVVKFKAGKKLKDAI 90 >gi|303248758|ref|ZP_07335010.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|302489845|gb|EFL49774.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++D++ I G+ ++ ++ + + + I DS V GEA+ ++ F TF V ++ +R Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLAAIQDSLVAGEALTLTGFGTFKVSERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GR+ +T + I + V F LK + Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAVK 91 >gi|262278925|ref|ZP_06056710.1| nucleoid DNA-binding protein [Acinetobacter calcoaceticus RUH2202] gi|299770391|ref|YP_003732417.1| integration host factor, beta subunit [Acinetobacter sp. DR1] gi|262259276|gb|EEY78009.1| nucleoid DNA-binding protein [Acinetobacter calcoaceticus RUH2202] gi|298700479|gb|ADI91044.1| integration host factor, beta subunit [Acinetobacter sp. DR1] Length = 100 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ I+ K L+ V + +++ ++ I+I F +F + + Sbjct: 3 TEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRD 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RVGRN +T + V++ + V FK L+ + + + Sbjct: 63 PRVGRNPKTGRSVEVAAKAVPHFKPGKALRDAVNESGK 100 >gi|145629273|ref|ZP_01785072.1| integration host factor beta-subunit [Haemophilus influenzae 22.1-21] gi|145633319|ref|ZP_01789050.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae 3655] gi|145634450|ref|ZP_01790160.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae PittAA] gi|145636917|ref|ZP_01792582.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae PittHH] gi|145641112|ref|ZP_01796693.1| integration host factor beta-subunit [Haemophilus influenzae R3021] gi|148827069|ref|YP_001291822.1| integration host factor subunit beta [Haemophilus influenzae PittGG] gi|166918549|sp|A5UF83|IHFB_HAEIG RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|144978776|gb|EDJ88499.1| integration host factor beta-subunit [Haemophilus influenzae 22.1-21] gi|144986165|gb|EDJ92755.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae 3655] gi|145268430|gb|EDK08424.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae PittAA] gi|145269998|gb|EDK09936.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae PittHH] gi|145274273|gb|EDK14138.1| integration host factor beta-subunit [Haemophilus influenzae 22.4-21] gi|148718311|gb|ABQ99438.1| hypothetical protein CGSHiGG_01900 [Haemophilus influenzae PittGG] gi|301169962|emb|CBW29566.1| integration host factor (IHF), DNA-binding protein, beta subunit [Haemophilus influenzae 10810] Length = 94 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +K+ L K+ V + I S G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|297538718|ref|YP_003674487.1| histone family protein DNA-binding protein [Methylotenera sp. 301] gi|297258065|gb|ADI29910.1| histone family protein DNA-binding protein [Methylotenera sp. 301] Length = 90 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ SI+ GLS+ + R + I + +G+ + + F TF+V ++ +R G Sbjct: 1 MNKSELIDSIASASGLSKAAAGRALDATTAAITAAMKKGDLVTLIGFGTFYVGKREARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +KI F+A LK + Sbjct: 61 RNPRTGATIKIKAANSPKFRAGKSLKDAVN 90 >gi|160934238|ref|ZP_02081625.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753] gi|156866911|gb|EDO60283.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753] Length = 84 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 43/83 (51%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 +++++ +S+KD+ V + + I ++ + E +++ F TF V+ + R GR+ +TN Sbjct: 2 AVAEKANISKKDADTAVNAVIDTIVETLAKDEKVQLVGFGTFEVRSRSERQGRDPRTNSP 61 Query: 73 VKIDPRRVVVFKASSILKKRIMD 95 + I +V FK K I Sbjct: 62 ITIPASKVPAFKVGKAFKSAIDK 84 >gi|169832956|ref|YP_001694534.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Hungary19A-6] gi|168995458|gb|ACA36070.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Hungary19A-6] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFVAVADYLAAGEKVQLIGFGNFEVRERAERKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEMTIAASKVPAFKAGKALKDAVK 91 >gi|15900980|ref|NP_345584.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4] gi|15903064|ref|NP_358614.1| DNA-binding protein HU [Streptococcus pneumoniae R6] gi|111658012|ref|ZP_01408716.1| hypothetical protein SpneT_02000809 [Streptococcus pneumoniae TIGR4] gi|116516205|ref|YP_816472.1| DNA-binding protein HU [Streptococcus pneumoniae D39] gi|148985086|ref|ZP_01818329.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71] gi|148989157|ref|ZP_01820547.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73] gi|148994562|ref|ZP_01823721.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68] gi|148998383|ref|ZP_01825825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70] gi|149003768|ref|ZP_01828600.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69] gi|149006210|ref|ZP_01829922.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74] gi|149012891|ref|ZP_01833804.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75] gi|149024915|ref|ZP_01836316.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72] gi|168483191|ref|ZP_02708143.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1873-00] gi|168486472|ref|ZP_02710980.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1087-00] gi|168488958|ref|ZP_02713157.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae SP195] gi|168492008|ref|ZP_02716151.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC0288-04] gi|168493057|ref|ZP_02717200.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC3059-06] gi|168576162|ref|ZP_02722056.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae MLV-016] gi|182684138|ref|YP_001835885.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14] gi|194397873|ref|YP_002037741.1| DNA-binding protein HU [Streptococcus pneumoniae G54] gi|221231850|ref|YP_002511002.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669] gi|225854609|ref|YP_002736121.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae JJA] gi|225856753|ref|YP_002738264.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae P1031] gi|225858923|ref|YP_002740433.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae 70585] gi|225861076|ref|YP_002742585.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Taiwan19F-14] gi|237650781|ref|ZP_04525033.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CCRI 1974] gi|237822369|ref|ZP_04598214.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CCRI 1974M2] gi|298229872|ref|ZP_06963553.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254158|ref|ZP_06977744.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502870|ref|YP_003724810.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A] gi|303254179|ref|ZP_07340291.1| DNA-binding protein HU [Streptococcus pneumoniae BS455] gi|303259776|ref|ZP_07345751.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293] gi|303262951|ref|ZP_07348886.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292] gi|303264913|ref|ZP_07350829.1| DNA-binding protein HU [Streptococcus pneumoniae BS397] gi|303266894|ref|ZP_07352772.1| DNA-binding protein HU [Streptococcus pneumoniae BS457] gi|303268930|ref|ZP_07354715.1| DNA-binding protein HU [Streptococcus pneumoniae BS458] gi|307067705|ref|YP_003876671.1| nucleoid DNA-binding protein [Streptococcus pneumoniae AP200] gi|307127356|ref|YP_003879387.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B] gi|14972589|gb|AAK75224.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4] gi|15458637|gb|AAK99824.1| Histone-like DNA-binding protein [Streptococcus pneumoniae R6] gi|116076781|gb|ABJ54501.1| DNA-binding protein HU [Streptococcus pneumoniae D39] gi|147755780|gb|EDK62825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70] gi|147758214|gb|EDK65216.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69] gi|147761987|gb|EDK68949.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74] gi|147763180|gb|EDK70120.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75] gi|147922784|gb|EDK73901.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71] gi|147925380|gb|EDK76458.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73] gi|147927156|gb|EDK78193.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68] gi|147929538|gb|EDK80532.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72] gi|172043527|gb|EDT51573.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1873-00] gi|182629472|gb|ACB90420.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14] gi|183570502|gb|EDT91030.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC1087-00] gi|183572358|gb|EDT92886.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae SP195] gi|183573808|gb|EDT94336.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC0288-04] gi|183576766|gb|EDT97294.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae CDC3059-06] gi|183577917|gb|EDT98445.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae MLV-016] gi|194357540|gb|ACF55988.1| DNA-binding protein HU [Streptococcus pneumoniae G54] gi|220674310|emb|CAR68853.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669] gi|225721544|gb|ACO17398.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae 70585] gi|225723096|gb|ACO18949.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae JJA] gi|225724771|gb|ACO20623.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae P1031] gi|225727077|gb|ACO22928.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Streptococcus pneumoniae Taiwan19F-14] gi|298238465|gb|ADI69596.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A] gi|301794226|emb|CBW36646.1| DNA-binding protein HU [Streptococcus pneumoniae INV104] gi|301800078|emb|CBW32675.1| DNA-binding protein HU [Streptococcus pneumoniae OXC141] gi|301801998|emb|CBW34727.1| DNA-binding protein HU [Streptococcus pneumoniae INV200] gi|302598850|gb|EFL65884.1| DNA-binding protein HU [Streptococcus pneumoniae BS455] gi|302635928|gb|EFL66428.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292] gi|302638981|gb|EFL69441.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293] gi|302641548|gb|EFL71910.1| DNA-binding protein HU [Streptococcus pneumoniae BS458] gi|302643592|gb|EFL73861.1| DNA-binding protein HU [Streptococcus pneumoniae BS457] gi|302645601|gb|EFL75832.1| DNA-binding protein HU [Streptococcus pneumoniae BS397] gi|306409242|gb|ADM84669.1| Bacterial nucleoid DNA-binding protein [Streptococcus pneumoniae AP200] gi|306484418|gb|ADM91287.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B] gi|315419703|gb|ADU15821.1| histone-like protein [Streptococcus pseudopneumoniae] gi|327389329|gb|EGE87674.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA04375] gi|332073475|gb|EGI83954.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA17570] gi|332075067|gb|EGI85538.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA17545] gi|332075447|gb|EGI85916.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA41301] gi|332200509|gb|EGJ14581.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA41317] gi|332201601|gb|EGJ15671.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA47368] gi|332202970|gb|EGJ17038.1| bacterial DNA-binding family protein [Streptococcus pneumoniae GA47901] Length = 91 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAERKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK + Sbjct: 63 NPQTGKEMTIAASKVPAFKAGKALKDAVK 91 >gi|296536157|ref|ZP_06898285.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] gi|296263528|gb|EFH10025.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] Length = 90 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 44/87 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV +++ LS+ + + +F+ I S + +++ F TF ++ + G Sbjct: 1 MNKQDLVAVVAETGELSKAKAGEVLDAVFDAISQSLKAKQEVRLVGFGTFSTSRRKAGKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +E++I V FKA LK Sbjct: 61 RNPRTGEEIEIAATTTVRFKAGKALKD 87 >gi|288986945|ref|YP_003456908.1| integration host factor, beta subunit [Allochromatium vinosum DSM 180] gi|288898324|gb|ADC64158.1| integration host factor, beta subunit [Allochromatium vinosum DSM 180] Length = 95 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ ++ L D V L N + +S GE I++ F +F + + R Sbjct: 1 MTRSELITQMANRQEHLPEADVEVVVKALLNLLRESLANGERIEVRGFGSFSLHYRPPRQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V + + FK L++R+ Sbjct: 61 ARNPKTGETVFTAGKHYLHFKPGKELRERVN 91 >gi|237834245|ref|XP_002366420.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49] gi|211964084|gb|EEA99279.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49] Length = 235 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 55/106 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +TR DLV S++ E + R + + V+ I S +G+ + +S F + ++++G Sbjct: 118 GSAVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGE 177 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 RV RN +T +++ + F S +LK ++ + + + +++D Sbjct: 178 RVARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHEADEEDA 223 >gi|312867148|ref|ZP_07727358.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405] gi|322389040|ref|ZP_08062608.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903] gi|311097277|gb|EFQ55511.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405] gi|321144263|gb|EFX39673.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903] Length = 91 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK+ + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKEAVK 91 >gi|157364264|ref|YP_001471031.1| histone family protein DNA-binding protein [Thermotoga lettingae TMO] gi|157314868|gb|ABV33967.1| histone family protein DNA-binding protein [Thermotoga lettingae TMO] Length = 90 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +SK+ GL +KD + V +F+ + D+ +GE +++ F +F V++ R G Sbjct: 1 MNKKELVDKVSKKAGLKKKDVKKVVDMVFDTVTDALAKGEKVQLVGFGSFEVRKAAQRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + + I R+V FK LK+++ Sbjct: 61 VNPQTKKPITIPSRKVPKFKPGKALKEKVK 90 >gi|317153197|ref|YP_004121245.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316943448|gb|ADU62499.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 91 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++S++ + ++T+ V + + ++ +RG+ ++I F +F +K G Sbjct: 1 MNKSELIKALSEQKKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V++ +++ F+ LK+ I D Sbjct: 61 RNPKTGSVVQVRSKKLPFFRPGKELKEFIND 91 >gi|72161032|ref|YP_288689.1| histone-like DNA-binding protein [Thermobifida fusca YX] gi|71914764|gb|AAZ54666.1| Histone-like bacterial DNA-binding protein [Thermobifida fusca YX] Length = 93 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +IS G +K +T V + I + +G+ + I+ F F Q+ +R Sbjct: 1 MNKRDLIDAISGRLG-DKKTATEAVNAVLETIQQTVAKGDKVAITGFGVFEKAQRAARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T + + V F+ + K + + + Sbjct: 60 RNPSTGATIHVPASYVPKFRPGADFKALVNNGKK 93 >gi|325292629|ref|YP_004278493.1| histone-like protein [Agrobacterium sp. H13-3] gi|325060482|gb|ADY64173.1| histone-like protein [Agrobacterium sp. H13-3] Length = 91 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F + + G I+++ F +F V ++ + G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQNELKSGGDIRLAGFGSFSVSRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90 >gi|172055154|ref|YP_001806481.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] gi|171701435|gb|ACB54415.1| DNA binding protein HU [Cyanothece sp. ATCC 51142] Length = 92 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LVK+I+ E G + T+ + I ++ G+ I + F TF + + R G Sbjct: 1 MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKITLVGFGTFEPRDRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + + I + F AS K+++ Sbjct: 61 KNPQTGEPLTIPATTIPAFSASKAFKEKVK 90 >gi|325118559|emb|CBZ54110.1| putative DNA-binding protein HU [Neospora caninum Liverpool] Length = 221 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 53/99 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ +TR DLV S++ E LSR D R V L I S +G+ + IS F +F ++++G Sbjct: 103 SQVVTRKDLVASVAAELQLSRADVERTVGALLRHIAASLEQGQKVSISKFGSFGLRRRGE 162 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RV RN +T + + + F S +LK ++ D M Sbjct: 163 RVARNPRTGEPLNVPATTFPTFSFSKVLKDKVRDVMPAH 201 >gi|270700801|ref|ZP_06223048.1| integration host factor, beta subunit [Haemophilus influenzae HK1212] gi|319896915|ref|YP_004135110.1| integration host factor beta-subunit [Haemophilus influenzae F3031] gi|329123270|ref|ZP_08251838.1| integration host factor beta subunit [Haemophilus aegyptius ATCC 11116] gi|270315863|gb|EFA27957.1| integration host factor, beta subunit [Haemophilus influenzae HK1212] gi|317432419|emb|CBY80774.1| Integration host factor beta-subunit [Haemophilus influenzae F3031] gi|327471479|gb|EGF16927.1| integration host factor beta subunit [Haemophilus aegyptius ATCC 11116] Length = 94 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +K+ L K+ V + I S +G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|197121150|ref|YP_002133101.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|220915851|ref|YP_002491155.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196170999|gb|ACG71972.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|219953705|gb|ACL64089.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 115 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 54/101 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ + + G+++K + + T+F+ + D+ +GE I+I FHVK G Sbjct: 1 MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 RN +T + + + P+R ++F+ L+ R+ K ++ Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPELVAKPSQP 101 >gi|11467715|ref|NP_050767.1| DNA-binding protein hu homolog [Guillardia theta] gi|118265|sp|P29214|DBH_GUITH RecName: Full=DNA-binding protein HU homolog; AltName: Full=Histone-like protein gi|99344|pir||B41609 hlpA protein - Cryptomonas sp. chloroplast (strain Phi) gi|3603040|gb|AAC35701.1| DNA-binding protein hu homolog [Guillardia theta] Length = 93 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ S+ D + +T++ I D+ GE + + F +F +++ +R G Sbjct: 1 MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +++ + R+ F + + ++ Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVNK 91 >gi|325275144|ref|ZP_08141117.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] gi|324099716|gb|EGB97589.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] Length = 101 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L I+++ L+++ + + + + + I + + + + + F TF + +G+R G Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +N QT Q VKI V FK L+ + K +K Sbjct: 60 KNPQTGQPVKIKASNTVAFKPGKNLRDSVNTPAAPSKASK 99 >gi|16273140|ref|NP_439377.1| integration host factor subunit beta [Haemophilus influenzae Rd KW20] gi|260581140|ref|ZP_05848960.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] gi|1170525|sp|P43724|IHFB_HAEIN RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1574152|gb|AAC22874.1| integration host factor, beta-subunit (himD) [Haemophilus influenzae Rd KW20] gi|260092168|gb|EEW76111.1| integration host factor, beta subunit [Haemophilus influenzae RdAW] Length = 94 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +K+ L K+ V + I S G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK R+ Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARV 90 >gi|26991989|ref|NP_747414.1| histone family protein DNA-binding protein [Pseudomonas putida KT2440] gi|148550422|ref|YP_001270524.1| histone family protein DNA-binding protein [Pseudomonas putida F1] gi|24987121|gb|AAN70878.1|AE016732_3 DNA-binding protein HU-alpha [Pseudomonas putida KT2440] gi|148514480|gb|ABQ81340.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas putida F1] gi|313501287|gb|ADR62653.1| HupA [Pseudomonas putida BIRD-1] Length = 99 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L I+ + L+++ + + + + + I + + + + + F TF + +G+R G Sbjct: 1 MRKPELAAVIADKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +N QT + VKI V FK L+ + + K K Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLRDSVNAPAKPAKKGK 99 >gi|328954010|ref|YP_004371344.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328454334|gb|AEB10163.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 90 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ I+ + + D R + + D + I ++ F TF V ++ R G Sbjct: 1 MTKGELISQIAVAGQVKKADVERTLNAFIKTMVDILQQQGRISLAGFGTFTVTERREREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI +VV FK LK I Sbjct: 61 RNPQTGEPIKIAATKVVKFKPGKSLKDTIK 90 >gi|254496694|ref|ZP_05109557.1| integration host factor beta subunit [Legionella drancourtii LLAP12] gi|254354122|gb|EET12794.1| integration host factor beta subunit [Legionella drancourtii LLAP12] Length = 105 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I+ L+ K + + + D+ ++ + I+I F +F + + R Sbjct: 1 MIKSELIEHIAARMTHLTEKQVADGINRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T ++V + FK L++R+ Sbjct: 61 AHNPKTGEKVVTKAKYSPHFKPGKELRERV 90 >gi|61222639|sp|P0A3H3|DBH1_RHILE RecName: Full=DNA-binding protein HRL18 gi|61222641|sp|P0A3H4|DBH1_AGRTU RecName: Full=DNA-binding protein HRL18 Length = 91 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F + G I+++ F +F V ++ + G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90 >gi|269958037|ref|YP_003327826.1| histone family protein DNA-binding protein [Xylanimonas cellulosilytica DSM 15894] gi|269306718|gb|ACZ32268.1| histone family protein DNA-binding protein [Xylanimonas cellulosilytica DSM 15894] Length = 93 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 51/92 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +S+LV +I+ + L++ + + + +S +GEA+K++ + ++ +R Sbjct: 2 SLNKSELVSAIAAKSELTKAQAEDALNAFQEVLVESLAKGEAVKLTGLLSIERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E++I V A S+LKK + + Sbjct: 62 GRNPRTGEEIQIPAGFGVKVSAGSVLKKAVSE 93 >gi|222085567|ref|YP_002544097.1| bacterial nucleoid DNA-binding protein [Agrobacterium radiobacter K84] gi|221723015|gb|ACM26171.1| bacterial nucleoid DNA-binding protein [Agrobacterium radiobacter K84] Length = 91 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+++ D+ V +F+ + +G I+++ F +F V + + G Sbjct: 1 MNKNELVSAVAEKAGITKADAASAVDAVFDAVQAELKKGGDIRLAGFGSFTVSHRAASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F LK + Sbjct: 61 RNPSTGAEVDIAARNVPKFTPGKGLKDAVN 90 >gi|91790778|ref|YP_551729.1| histone-like DNA-binding protein [Polaromonas sp. JS666] gi|91700658|gb|ABE46831.1| histone-like DNA-binding protein [Polaromonas sp. JS666] Length = 103 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L+ +I+ E LS+ + R + L I + +G+ +++ F TF ++ +R G Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T + VKI V F A + K + Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89 >gi|332886429|gb|EGK06673.1| hypothetical protein HMPREF9456_00547 [Dysgonomonas mossii DSM 22836] Length = 88 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+++ GLS+ DS + + + + + + + F TF V QK +R G Sbjct: 1 MNKTELINAIAEKSGLSKVDSKKALEAFIESVTEEVKKDGKVALVGFGTFSVTQKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T + I ++ V FKA + L Sbjct: 61 INPRTKAVINIPAKKTVKFKAGADL 85 >gi|303258448|ref|ZP_07344451.1| integration host factor subunit alpha [Burkholderiales bacterium 1_1_47] gi|330999748|ref|ZP_08323456.1| putative integration host factor, alpha subunit [Parasutterella excrementihominis YIT 11859] gi|302858894|gb|EFL81982.1| integration host factor subunit alpha [Burkholderiales bacterium 1_1_47] gi|329573910|gb|EGG55490.1| putative integration host factor, alpha subunit [Parasutterella excrementihominis YIT 11859] Length = 136 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 55/97 (56%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+T+S L I ++FGL ++ V F+E + VRGE +K+S+F F +KQK Sbjct: 28 GDTLTKSHLADVIYEQFGLPKRFCKEIVDLFFDEALECLVRGEELKLSNFGVFSIKQKSE 87 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 R GRN ++ + I R+VV F S L+K +++ + Sbjct: 88 RPGRNPKSGESAIIKARQVVSFHPSGQLRKEVVEGRK 124 >gi|91787441|ref|YP_548393.1| histone-like protein DNA-binding protein [Polaromonas sp. JS666] gi|91696666|gb|ABE43495.1| HU family DNA-binding protein [Polaromonas sp. JS666] Length = 103 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 50/89 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L++SI+ E LS+ + R + L + I + +G+A+++ F TF ++ +R G Sbjct: 1 MNRAELIESIAAETDLSKAATGRVLDVLIDTIQKTVKKGDAVQLVGFGTFKSTKRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T + VKI V F A + K + Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89 >gi|39938728|ref|NP_950494.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721837|dbj|BAD04327.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 94 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA---VRGEAIKISSFATFHVKQKGS 61 + + + ++ ++++ G+S+K++ +F+ I S E + ++ F TF VK + + Sbjct: 1 MNKLEFLRKLAEKNGVSQKEADKFLNNFIEVISQSLQEFKEDEKVTLTGFGTFEVKHRSA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 R G+N +T + + I ++V FK S K Sbjct: 61 REGKNPRTGKTIDIPAKKVPTFKFSKSFKD 90 >gi|157151424|ref|YP_001450003.1| DNA-binding histone-like protein HU [Streptococcus gordonii str. Challis substr. CH1] gi|262282714|ref|ZP_06060482.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA] gi|157076218|gb|ABV10901.1| DNA-binding histone-like protein HU [Streptococcus gordonii str. Challis substr. CH1] gi|262262005|gb|EEY80703.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA] Length = 91 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ ++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDAVK 91 >gi|15888591|ref|NP_354272.1| histone-like protein [Agrobacterium tumefaciens str. C58] gi|15156311|gb|AAK87057.1| histone-like protein [Agrobacterium tumefaciens str. C58] Length = 91 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ GL++ D+ V +F + G I+++ F +F V ++ + G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQGELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T EV I R V F A LK + Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVN 90 >gi|315419711|gb|ADU15825.1| histone-like protein [Streptococcus parasanguinis] Length = 91 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E++I +V FKA LK I Sbjct: 63 NPQTGKEIEIAASKVPTFKAGKALKDVIK 91 >gi|329114632|ref|ZP_08243391.1| Integration host factor subunit beta [Acetobacter pomorum DM001] gi|326696112|gb|EGE47794.1| Integration host factor subunit beta [Acetobacter pomorum DM001] Length = 109 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ ++ L K++TR V +F I S G +++ F F VK++ RV Sbjct: 6 MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRV 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN +T +V++ + V FK L +R+ + G K ++ V Sbjct: 66 GRNPKTGVQVQVGKKLVPFFKTGKELHQRLNKPVSGSKRSRSSV 109 >gi|325111062|ref|YP_004272130.1| histone family protein DNA-binding protein [Planctomyces brasiliensis DSM 5305] gi|324971330|gb|ADY62108.1| histone family protein DNA-binding protein [Planctomyces brasiliensis DSM 5305] Length = 136 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQKGSR 62 +T+ ++VK+IS E GL++ + V F I ++ V I++ +F F VK++ +R Sbjct: 1 MTKKEIVKAISDELGLTQLQTKAIVQRTFESIIETLVHDPKHRIELRNFGVFEVKKRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN +TN+ V ++ + VV FK +++++ M+ + Sbjct: 61 KARNPRTNERVDVEEKYVVTFKPGKEMEEKVRQLMKAEEEK 101 >gi|288800481|ref|ZP_06405939.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str. F0039] gi|288332694|gb|EFC71174.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str. F0039] Length = 90 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ LS+ + + + I + V G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIERIAAGSDLSKAAAKKALDATTEAIKAALVAGDKVQLVGFGTFSVNERPARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T Q++ I ++V FKA + L I Sbjct: 61 INPATKQKINIPAKKVAKFKAGAELNDAIK 90 >gi|322436189|ref|YP_004218401.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321163916|gb|ADW69621.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 93 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M + + DL++ + + GL R + V +F + S V GE I++ F F VK + Sbjct: 1 MRHDLIKQDLIQRVVERTGLVRTKAEAAVDAIFESMKQSLVEGERIELRGFGVFTVKPRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 + VGRN +T EV I P + V FK L Sbjct: 61 TGVGRNPRTGAEVSIAPGKAVRFKPGKDL 89 >gi|149177307|ref|ZP_01855912.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797] gi|148843832|gb|EDL58190.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797] Length = 148 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++VK IS+E GL++ + V F+ I D+ V + I++ +F F VK++ +R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V ++ + VV FK ++KR+ + Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVRN 91 >gi|217973689|ref|YP_002358440.1| histone family protein DNA-binding protein [Shewanella baltica OS223] gi|217498824|gb|ACK47017.1| histone family protein DNA-binding protein [Shewanella baltica OS223] Length = 91 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E S+ + V + +I + GE I + F TF ++ ++ G Sbjct: 1 MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++ID FKAS+ LK++I Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQIN 90 >gi|158521048|ref|YP_001528918.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158509874|gb|ABW66841.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 94 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+S ++ S+ +E GL RK V L I ++ GE + +S F F VK+K +R Sbjct: 2 TLTKSRIIDSVQEETGLPRKRCDELVEELLEIIKETLANGENLMVSGFGKFCVKEKKARK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T ++ +D R+VV FK S L+++I Sbjct: 62 GRNPATGDDLMLDERKVVTFKCSQGLREKINGS 94 >gi|323136622|ref|ZP_08071703.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397939|gb|EFY00460.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 93 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E S+ + + + + I + +G+ +++ F TF VK++ + G Sbjct: 1 MNKLELVEHVANETETSKAAAAAAIDAVIDGITKALKKGDEVRLVGFGTFSVKKRAAGKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN T +E+KI + FK + LK + Sbjct: 61 RNPATGEEIKIPASKSARFKPGATLKAALNKA 92 >gi|269125485|ref|YP_003298855.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] gi|268310443|gb|ACY96817.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] Length = 159 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L+++++ G + R V +F I D GE + ++ F TF + +R Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V++ P F+A K R+ Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRVAG 91 >gi|16330050|ref|NP_440778.1| DNA binding protein HU [Synechocystis sp. PCC 6803] gi|1652537|dbj|BAA17458.1| DNA binding protein HU [Synechocystis sp. PCC 6803] Length = 135 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Query: 5 ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + + +LV +++ + +++K+ ++ + I + GE + + F +F ++ Sbjct: 36 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 95 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + R GRN +T ++ I +V F A + K ++ + + Sbjct: 96 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPEKK 135 >gi|315419723|gb|ADU15831.1| histone-like protein [Streptococcus mitis] Length = 91 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V FKA LK I Sbjct: 63 NPQTGKEITIAASKVPAFKAGKALKDVIK 91 >gi|283956256|ref|ZP_06373736.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336] gi|283791976|gb|EFC30765.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336] Length = 98 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 50/97 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R T + +K+ RV FK LK+ + +K Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASNKKK 97 >gi|27228588|ref|NP_758638.1| DNA binding protein [Pseudomonas resinovorans] gi|219857010|ref|YP_002474042.1| DNA binding protein [Pseudomonas sp. CA10] gi|26106176|dbj|BAC41616.1| DNA binding protein [Pseudomonas resinovorans] gi|219688938|dbj|BAH10029.1| DNA binding protein [Pseudomonas putida] Length = 91 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LVK+I+ E G S+ + +L + + + G+ + + F TF ++ R G Sbjct: 1 MNRQELVKAIADESGHSQSTVGEVLNSLISTVQNVVAGGDKVSLVGFGTFESTKQAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + I F K+R+ Sbjct: 61 RNPSTGAPITIAASIKPKFTPGKSFKERVNQ 91 >gi|258542769|ref|YP_003188202.1| integration host factor DNA-binding subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633847|dbj|BAH99822.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636906|dbj|BAI02875.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639959|dbj|BAI05921.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256643015|dbj|BAI08970.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256646070|dbj|BAI12018.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256649123|dbj|BAI15064.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256652110|dbj|BAI18044.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655167|dbj|BAI21094.1| integration host factor DNA-binding beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 104 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L+ ++ ++ L K++TR V +F I S G +++ F F VK++ R+ Sbjct: 1 MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 GRN +T +VK+ + V FK L +R+ + G K ++ V Sbjct: 61 GRNPKTGVQVKVGKKLVPFFKTGKELHQRLNKPVAGSKRSRSSV 104 >gi|117924544|ref|YP_865161.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117608300|gb|ABK43755.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +I+ + GL+++ + V +F+E+ + +GE +++ F F + + R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++ + V FK ++KR+ Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >gi|148653384|ref|YP_001280477.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] gi|148572468|gb|ABQ94527.1| histone family protein DNA-binding protein [Psychrobacter sp. PRwf-1] Length = 99 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M++ I +SDL++ ++ ++ D V + + + + I++ F TF + + Sbjct: 1 MTEVINKSDLIQDVAARCDYMADSDVDNAVREILELLSEKLISNNRIEVRGFGTFCLHHR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R GRN +T + V + + + FK L++ + Sbjct: 61 EARQGRNPKTGEMVLVPQKAIPHFKPGKALREGVN 95 >gi|94968214|ref|YP_590262.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|94550264|gb|ABF40188.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 107 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 48/88 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S T+ + D++ + + G+++ + V T+F + + RG+ I++ F F+V+ + + Sbjct: 16 SPTVIKLDIINEVVNKTGVTKTKAELAVETVFESMKKALSRGDRIELRGFGVFNVRPRKT 75 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 +GRN +T EV I P + V FK L Sbjct: 76 GIGRNPRTGAEVNIPPGKAVRFKPGKEL 103 >gi|254788366|ref|YP_003075795.1| DNA-binding protein HU [Teredinibacter turnerae T7901] gi|237686942|gb|ACR14206.1| DNA-binding protein HU [Teredinibacter turnerae T7901] Length = 93 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 45/87 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLVK + L+R + V + ++ ++ RGE +++ +F V+ + + G Sbjct: 1 MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 N QT + ++I + + FKA L+ Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87 >gi|256394110|ref|YP_003115674.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] gi|256360336|gb|ACU73833.1| histone family protein DNA-binding protein [Catenulispora acidiphila DSM 44928] Length = 167 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL ++++ + D+ ++V +F+ I GE ++I F TF Q+ +R+G Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 RN QT +++ F A + R+ + DV P Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEASAVPAEASQDVAKP 107 >gi|170719347|ref|YP_001747035.1| histone family protein DNA-binding protein [Pseudomonas putida W619] gi|169757350|gb|ACA70666.1| histone family protein DNA-binding protein [Pseudomonas putida W619] Length = 99 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L I+++ L+++ + + + + + I + + + + + F TF + +G+R G Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +N QT + VKI V FK L++ + + K K Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLRESVNVPAKPAKKAK 99 >gi|284006424|emb|CBA71660.1| DNA-binding protein HU-beta [Arsenophonus nasoniae] Length = 100 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 48/92 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV+ I+KE ++ + + + + +G+ +++ F TF VKQ+ +R GRN Sbjct: 8 KKELVEKIAKESKAAKSVAESVLNAFLKTVSQTLKKGDKVQLIGFGTFEVKQRAARNGRN 67 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +T + +KI +V FKA LK + + Sbjct: 68 PKTGKVIKIAAAKVPSFKAGQGLKDTVNGHKK 99 >gi|126173989|ref|YP_001050138.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|153000280|ref|YP_001365961.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160874914|ref|YP_001554230.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|125997194|gb|ABN61269.1| histone family protein DNA-binding protein [Shewanella baltica OS155] gi|151364898|gb|ABS07898.1| histone family protein DNA-binding protein [Shewanella baltica OS185] gi|160860436|gb|ABX48970.1| histone family protein DNA-binding protein [Shewanella baltica OS195] gi|315267151|gb|ADT94004.1| histone family protein DNA-binding protein [Shewanella baltica OS678] Length = 91 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E S+ + V + +I + GE I + F TF ++ ++ G Sbjct: 1 MNKAQLIQRIAAELNASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++ID FKAS+ LK++I Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQIN 90 >gi|94495282|ref|ZP_01301863.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] gi|94425548|gb|EAT10568.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58] Length = 91 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL ++++ E +++ D+ + V +F I D+A +GE I ++ F F VK + +R G Sbjct: 1 MNNSDLAEALAAEHDVTKADARKLVDAVFANIADAAAKGEEISLNGFGKFKVKDQPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T+ ++I + + F + +K ++ Sbjct: 61 RNPSTSATIQIAASKKLAFTPAKAVKDQLNG 91 >gi|117926190|ref|YP_866807.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609946|gb|ABK45401.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +I+ + GL+++ + V +FNEI + +GE +++ F F + + R Sbjct: 1 MTKSELILTIAAQKGLTKQAAAMVVDMVFNEIGKAMAKGERVELRGFGVFEPRARKPRAA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++ + V FK ++KR+ Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >gi|46578812|ref|YP_009620.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120603581|ref|YP_967981.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46448224|gb|AAS94879.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120563810|gb|ABM29554.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311232675|gb|ADP85529.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 95 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 54/95 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT+T++++V +I ++ +R + V +L + + + A+ IS F F K Sbjct: 1 MSKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT++ + + PR+VVVF+ S + + + Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNE 95 >gi|325972610|ref|YP_004248801.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy] gi|324027848|gb|ADY14607.1| histone family protein DNA-binding protein [Spirochaeta sp. Buddy] Length = 108 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T++ +++S+ ++ GL+R D + + F E+ D + I++ F TF V+ + Sbjct: 3 GPKLTKAAIIESLHEKHGLNRADIHQIIDEFFEEVKDGLKNDQVIELRGFGTFEVRTRKG 62 Query: 62 R-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R RN +T V ++ V +F+ LK + + + N++D Sbjct: 63 REKARNPKTGAIVAVETHGVAIFRPGKELKDFVWELRDNKPVNEND 108 >gi|315419727|gb|ADU15833.1| histone-like protein [Streptococcus parasanguinis] Length = 91 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK + Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDVVK 91 >gi|303258444|ref|ZP_07344447.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|302858890|gb|EFL81978.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] Length = 92 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G S+ D + L +I + G+ I + F TF ++ +R G Sbjct: 1 MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T ++I F A K + Sbjct: 61 RNPATGATIQIPASVQPKFVAGKQFKDALN 90 >gi|238653880|emb|CAV30823.1| Integration host factor, alpha subunit [magnetite-containing magnetic vibrio] Length = 104 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 40/93 (43%), Positives = 57/93 (61%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +TR L ++I KE GLSR +S + T I +S V G+ +KISSF F V+ K Sbjct: 3 NKCLTRLQLSEAIYKEVGLSRTESAEILQTALKIISESLVSGDYVKISSFGCFSVRAKKK 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+GRN +T ++ I PR ++ F+ SS LK RI Sbjct: 63 RMGRNPKTGEQAIILPRNILTFRPSSTLKLRIN 95 >gi|315419713|gb|ADU15826.1| histone-like protein [Streptococcus oralis] gi|315419715|gb|ADU15827.1| histone-like protein [Streptococcus oralis] gi|315419721|gb|ADU15830.1| histone-like protein [Streptococcus oralis] Length = 91 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK I Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDVIK 91 >gi|283769425|ref|ZP_06342323.1| DNA-binding protein HU [Bulleidia extructa W1219] gi|283103950|gb|EFC05335.1| DNA-binding protein HU [Bulleidia extructa W1219] Length = 96 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 54/94 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T+ L + I+ E+ +S+KD+ V +F++I + +GE + I+ F F V +K Sbjct: 1 MAEQVTKKTLAEGIAAEYEVSKKDANELVNFVFDQITTAIKKGEEVSINGFGKFVVVEKA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R G N T +++KI + FKAS LK + Sbjct: 61 AREGLNPATGEKIKIKASKAPKFKASKTLKDLVN 94 >gi|332187527|ref|ZP_08389264.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] gi|332012456|gb|EGI54524.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] Length = 94 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV+ I + GL+ ++ VT F+EI +++ F F + + +R Sbjct: 1 MIRSELVQKIGQHNPGLNPREIELIVTIFFDEITKRLAANGRVELRGFGAFSTRARDART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + +RV FK ++ R+ Sbjct: 61 GRNPRTGETVDVVAKRVPYFKPGKEMRARLN 91 >gi|33152425|ref|NP_873778.1| integration host factor, beta subunit [Haemophilus ducreyi 35000HP] gi|71152154|sp|Q7VLR8|IHFB_HAEDU RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|33148648|gb|AAP96167.1| integration host factor, beta subunit [Haemophilus ducreyi 35000HP] Length = 93 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I+ L K V + I + + + ++I F +F + + R+ Sbjct: 1 MTKSELIEKLIALNPSLPEKAVEDGVKDILENIMLTLEQAKRVEIRGFGSFSLHYRQPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T VK+D + V FKA LK+R+ Sbjct: 61 GRNPKTGASVKLDAKYVPHFKAGKDLKERV 90 >gi|262370394|ref|ZP_06063720.1| integration host factor beta subunit [Acinetobacter johnsonii SH046] gi|262314736|gb|EEY95777.1| integration host factor beta subunit [Acinetobacter johnsonii SH046] Length = 101 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +SDL++ IS K L+ V + +++ S I+I F +F + + Sbjct: 3 TEALNKSDLIERISLKNPHLAEPLVEEAVKIMIDQMIASLSSDNRIEIRGFGSFALHHRE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RVGRN +T + V++ + V FK L+ + + Sbjct: 63 PRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNE 97 >gi|218679781|ref|ZP_03527678.1| integration host factor subunit beta [Rhizobium etli CIAT 894] Length = 85 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 38/76 (50%) Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78 L +D V + +EI D+ G +++ F F VK + SR GRN +T V ++ + Sbjct: 2 HLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEEK 61 Query: 79 RVVVFKASSILKKRIM 94 V FK L++R+ Sbjct: 62 WVPFFKTGKELRERLN 77 >gi|116624250|ref|YP_826406.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|116227412|gb|ABJ86121.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 108 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D++ + G+++ + V T+F + + +G+ I++ F F+VK + + +G Sbjct: 20 LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T EV I P + V FK L Sbjct: 80 RNPRTGAEVSIPPGKAVRFKPGKEL 104 >gi|239907249|ref|YP_002953990.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|283850195|ref|ZP_06367484.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|303247218|ref|ZP_07333492.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|239797115|dbj|BAH76104.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|283574221|gb|EFC22192.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|302491377|gb|EFL51265.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 91 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K++++ L ++ V + + + + + ++I F +F +K G Sbjct: 1 MNKSELIKTLAETKDLHIDEAADIVNAFVDSVKQALINEDRVEIRGFGSFKIKGYKGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ V + P+++ F+ LK+ + Sbjct: 61 RNPKSGDVVTVAPKKLPFFRPGKELKEYLNK 91 >gi|319776106|ref|YP_004138594.1| Integration host factor beta-subunit [Haemophilus influenzae F3047] gi|317450697|emb|CBY86917.1| Integration host factor beta-subunit [Haemophilus influenzae F3047] Length = 94 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + +K+ L K+ V + I S +G+ +++ F +F + + R+ Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T V + + V FKA LK + Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKALV 90 >gi|57237741|ref|YP_178989.1| DNA-binding protein HU [Campylobacter jejuni RM1221] gi|121613433|ref|YP_001000587.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81-176] gi|148926594|ref|ZP_01810276.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|153951444|ref|YP_001398017.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei 269.97] gi|157415169|ref|YP_001482425.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81116] gi|167005518|ref|ZP_02271276.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356397|ref|ZP_03223162.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni CG8421] gi|218562532|ref|YP_002344311.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9789717|sp|Q46121|DBH_CAMJE RecName: Full=DNA-binding protein HU; AltName: Full=HCj gi|81675587|sp|Q5HUP6|DBH_CAMJR RecName: Full=DNA-binding protein HU gi|409577|gb|AAA60954.1| hupB [Campylobacter jejuni] gi|57166545|gb|AAW35324.1| DNA-binding protein HU [Campylobacter jejuni RM1221] gi|58979331|gb|AAW83330.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979333|gb|AAW83331.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979337|gb|AAW83333.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979341|gb|AAW83335.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979343|gb|AAW83336.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979345|gb|AAW83337.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979359|gb|AAW83344.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979361|gb|AAW83345.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979369|gb|AAW83349.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979371|gb|AAW83350.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979375|gb|AAW83352.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei] gi|58979405|gb|AAW83367.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei] gi|58979411|gb|AAW83370.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979415|gb|AAW83372.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979417|gb|AAW83373.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979419|gb|AAW83374.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979435|gb|AAW83382.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979439|gb|AAW83384.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979441|gb|AAW83385.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979443|gb|AAW83386.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979445|gb|AAW83387.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979447|gb|AAW83388.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979449|gb|AAW83389.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979451|gb|AAW83390.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979453|gb|AAW83391.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979455|gb|AAW83392.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979457|gb|AAW83393.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979459|gb|AAW83394.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979461|gb|AAW83395.1| DNA-binding protein HU [Campylobacter jejuni] gi|58979485|gb|AAW83407.1| DNA-binding protein HU [Campylobacter jejuni] gi|112360238|emb|CAL35033.1| DNA-binding protein HU homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|121504251|gb|ABM55258.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81-176] gi|145845288|gb|EDK22382.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|152938890|gb|ABS43631.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei 269.97] gi|157386133|gb|ABV52448.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345782|gb|EDZ32420.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni CG8421] gi|284926146|gb|ADC28498.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp. jejuni IA3902] gi|307747812|gb|ADN91082.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni M1] gi|315058353|gb|ADT72682.1| DNA-binding protein HU-beta [Campylobacter jejuni subsp. jejuni S3] gi|315927538|gb|EFV06871.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929859|gb|EFV09022.1| DNA-binding protein [Campylobacter jejuni subsp. jejuni 305] gi|315932606|gb|EFV11537.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni 327] Length = 98 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 50/97 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R T + +K+ RV FK LK+ + +K Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 97 >gi|323137325|ref|ZP_08072403.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397312|gb|EFX99835.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 157 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%) Query: 4 TITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TR D+ +I + G+SR+++ R V + +E+ + V GE++K+ F +F V++K R Sbjct: 26 ALTRQDIALAIHRRIEGVSRREAKRIVDCVIDEMVSTLVSGESLKLHDFGSFLVREKEER 85 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 GRN +T V I+ RRVVVFKAS +K + + + + PS Sbjct: 86 SGRNPRTGAPVPIEARRVVVFKASPNMKATVNGEPPAPRDKTPEKRRPS 134 >gi|238899357|ref|YP_002925039.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467118|gb|ACQ68891.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 113 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + GL++ ST VT +F+ I DS + E ++I FATF V + R+ Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+ +T +++K R V VF A LK + Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89 >gi|319942323|ref|ZP_08016638.1| integration host factor subunit alpha [Sutterella wadsworthensis 3_1_45B] gi|319804196|gb|EFW01096.1| integration host factor subunit alpha [Sutterella wadsworthensis 3_1_45B] Length = 114 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+ ++ L +++ GL R + V T F + + +G+ +KI F V+ K +R Sbjct: 14 TLNKASLAEALVDHVAGLDRPHAKLIVETFFELVAEHLEKGDTVKIPGLGNFSVRDKVAR 73 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRNL+T + V I RRVV F S L R+ ++ Sbjct: 74 PGRNLKTGETVTITERRVVTFHPSGTLNSRVTTNL 108 >gi|304411460|ref|ZP_07393074.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|307305218|ref|ZP_07584966.1| histone family protein DNA-binding protein [Shewanella baltica BA175] gi|304350315|gb|EFM14719.1| histone family protein DNA-binding protein [Shewanella baltica OS183] gi|306911521|gb|EFN41946.1| histone family protein DNA-binding protein [Shewanella baltica BA175] Length = 91 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E S+ + V + +I + GE I + F TF ++ ++ G Sbjct: 1 MNKAQLIQRIAAELNASQSSTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++ID FKAS+ LK++I Sbjct: 61 RNPQTGEAIEIDGYNQPSFKASTALKQQIN 90 >gi|118580329|ref|YP_901579.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503039|gb|ABK99521.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 88 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++ V +I+ E + + + V D G+ I F TF V ++ +R G Sbjct: 1 MTKAEFVAAIAAELDVPKNVAAETVEAFLKVTTDLLKAGDKITFPGFGTFGVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN QT E++I + F A LK Sbjct: 61 RNPQTGAEIQIAASKSGKFTAGKNLK 86 >gi|327402190|ref|YP_004343028.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] gi|327317698|gb|AEA42190.1| histone family protein DNA-binding protein [Fluviicola taffensis DSM 16823] Length = 96 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 48/93 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I++E GL R ++ + V I S +G+ + + F +F VK++ + G Sbjct: 1 MTKADIVAEIAEETGLERNEAQKAVEAFMTSIKTSLTKGQNVYLRGFGSFIVKERAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN+ N + I + FK + + + + + Sbjct: 61 RNISKNTTIIIPAHNIPSFKPAKTFVEEVKNRV 93 >gi|150007792|ref|YP_001302535.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|255013499|ref|ZP_05285625.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|256840058|ref|ZP_05545567.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|262381699|ref|ZP_06074837.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|298376838|ref|ZP_06986793.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|301310172|ref|ZP_07216111.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149936216|gb|ABR42913.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|256738988|gb|EEU52313.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|262296876|gb|EEY84806.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|298266716|gb|EFI08374.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|300831746|gb|EFK62377.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 94 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ + GL ++++ + + + + E I + F T + + R+ Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T V I R V FK L + + ++ Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMNAHLK 94 >gi|86605642|ref|YP_474405.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab] gi|86554184|gb|ABC99142.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab] Length = 105 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGE---AIKISSFATFHVK 57 + +++LV +++ +++K++ +T I + GE + + F +F + Sbjct: 1 MNKAELVDAVAHRANVTKKEAEAVLTAALEIIVEEVASRDENGEPKGKVTLVGFGSFEAR 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 ++ R GRN +TN+++ I V F A + + + Sbjct: 61 KRKQREGRNPKTNEKMVIPASIVPTFTAGKTFRDAVAGGHK 101 >gi|269127666|ref|YP_003301036.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] gi|268312624|gb|ACY98998.1| histone family protein DNA-binding protein [Thermomonospora curvata DSM 43183] Length = 92 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +IS+ G S+K + V + I ++ +G+ + I+ F +F ++ +R Sbjct: 1 MNKRELVDAISERLG-SKKAAAEAVDAILETIQNAVAKGDKVAITGFGSFEKAERPARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + +++ V F+A S K + Sbjct: 60 RNPATGKTIEVPATSVPKFRAGSDFKNLVAG 90 >gi|118581076|ref|YP_902326.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503786|gb|ABL00269.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 91 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 44/87 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +++ +++ + + + + ++ GE + ++ F TF + +R+G Sbjct: 1 MTKAELVARMAESGDITKAAAEKALGGFIEAVTEAIKAGEKVTLTGFGTFSAVTRAARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN T QE++I + F LK Sbjct: 61 RNPATGQELQIAAKTSAKFSPGKELKD 87 >gi|118580308|ref|YP_901558.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503018|gb|ABK99500.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 90 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS+LV+ +S +S + + V +F + D+ + G+ I+I F +F + R G Sbjct: 1 MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN ++ EV + ++ FK LK+RI+ Sbjct: 61 RNPKSGIEVSVAAKKRPFFKVGKDLKERIL 90 >gi|313835866|gb|EFS73580.1| DNA-binding protein HU [Propionibacterium acnes HL037PA2] gi|314927134|gb|EFS90965.1| DNA-binding protein HU [Propionibacterium acnes HL044PA1] gi|314970776|gb|EFT14874.1| DNA-binding protein HU [Propionibacterium acnes HL037PA3] gi|328906040|gb|EGG25815.1| DNA-binding protein HU [Propionibacterium sp. P08] Length = 91 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L + I + GE +++ T ++ +R G Sbjct: 1 MTKSELIKAVAKQASLTEAQTNEAVKALTDVITAALAEGEKVQLPGLFTAEAVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|58979591|gb|AAW83460.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979595|gb|AAW83462.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979599|gb|AAW83464.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979613|gb|AAW83471.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979615|gb|AAW83472.1| DNA-binding protein HU [Campylobacter upsaliensis] Length = 98 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RVV FK L Sbjct: 61 RVPSTGKTIKVPATRVVKFKVGKNL 85 >gi|85860306|ref|YP_462508.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85723397|gb|ABC78340.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 91 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV++++K G +K + V + + + ++ +GE++ + F TF V ++ +R G Sbjct: 1 MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI ++V F A LK+ + Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAVAK 90 >gi|21672575|ref|NP_660642.1| integration host factor beta subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|2495248|sp|Q44654|IHFB_BUCAP RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|1448955|gb|AAC05430.1| integration host factor beta subunit [Buchnera aphidicola] gi|21623203|gb|AAM67853.1| integration host factor beta subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 93 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L + I++ + +S K V + I S +G+ I+I F TF + + SR+ Sbjct: 1 MTKSELFERIAERKAHISNKIIECAVKEMLEYISISLSKGKRIEIRGFGTFSLHYRSSRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++K++ R + FK L+ R Sbjct: 61 GRNPKTGKKIKLNERYIPYFKPGKQLRDRAN 91 >gi|50365017|ref|YP_053442.1| histone-like DNA-binding protein [Mesoplasma florum L1] gi|50363573|gb|AAT75558.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1] Length = 90 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ I +S+ + V +LF+ I + G + I+ F F + ++ +R G Sbjct: 1 MTKKDLINEIIANENISKVECEAVVNSLFDLIIEELSSGNEVSIAGFGKFAISERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T ++ I + FKA+ LK+++ Sbjct: 61 INPSTGDKISIAASKSAKFKAAKQLKEKLN 90 >gi|17547240|ref|NP_520642.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000] gi|187929862|ref|YP_001900349.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|207725148|ref|YP_002255545.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum MolK2] gi|207742516|ref|YP_002258908.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum IPO1609] gi|241663971|ref|YP_002982331.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|300690608|ref|YP_003751603.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] gi|300703213|ref|YP_003744815.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|309781438|ref|ZP_07676174.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA] gi|17429542|emb|CAD16228.1| probable dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum GMI1000] gi|187726752|gb|ACD27917.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|206590380|emb|CAQ37341.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum MolK2] gi|206593908|emb|CAQ60835.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum IPO1609] gi|240865998|gb|ACS63659.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|299065882|emb|CBJ37061.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CMR15] gi|299070876|emb|CBJ42178.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum CFBP2957] gi|299077668|emb|CBJ50304.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Ralstonia solanacearum PSI07] gi|308919851|gb|EFP65512.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA] Length = 94 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+S+LV +I+K+ LS + R + + I + +G I + F +F ++ +R GR Sbjct: 3 TKSELVAAIAKDAELSNAAAERALNSALENIKKTVAKGGTITLVGFGSFSSGKRAARTGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + +KI + V F A K + Sbjct: 63 NPRTGEAIKIPATKTVKFTAGKGFKDAVNK 92 >gi|256833715|ref|YP_003162442.1| histone family protein DNA-binding protein [Jonesia denitrificans DSM 20603] gi|256687246|gb|ACV10139.1| histone family protein DNA-binding protein [Jonesia denitrificans DSM 20603] Length = 93 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV +I+ + GL++ D+ ++ L + + + GEA+KI+ + ++ +R Sbjct: 2 ALNRSELVSAIAAKSGLTKTDADAALSALQDVLVEQLSAGEAVKITGLLSVERVERKART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E++I V A SILKK + Sbjct: 62 GRNPRTGEEIEIPAGYGVKISAGSILKKAV 91 >gi|323343529|ref|ZP_08083756.1| DNA-binding protein HU [Prevotella oralis ATCC 33269] gi|323095348|gb|EFZ37922.1| DNA-binding protein HU [Prevotella oralis ATCC 33269] Length = 114 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K + +++L++ I+ GLS+ + + + I + V G+ +++ F TF V ++ + Sbjct: 21 NKIMNKTELIEKIAAGSGLSKAAAKKALDATTEAIKAALVAGDKVQLIGFGTFSVTERPA 80 Query: 62 RVGRNL-QTNQEVKIDPRRVVVFKASSILKKRIM 94 RVG N + Q++ I ++V FK + L + Sbjct: 81 RVGVNPAKKGQKINIPAKKVAKFKVGAELADAVK 114 >gi|257091775|ref|YP_003165416.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044299|gb|ACV33487.1| histone family protein DNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 94 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ LS+ + + + + I DS +GE + + F +F + SR G Sbjct: 1 MNKSELIDAIAARSELSKAAAAKALDAVIETIVDSVAQGETVTLVGFGSFKASGRASREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T +++ I V F A + K R+ Sbjct: 61 KNPKTGEKIHIPETTVPKFSAGATFKARVAG 91 >gi|326386334|ref|ZP_08207958.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209559|gb|EGD60352.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKD-STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L++ ++K+ R D R V F+EI G +++ F F +++ +R Sbjct: 1 MIRSELLQVLAKQSPDMRSDEIERVVDVFFDEIGKRLAEGGRVELRGFGAFSTRERDARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + +RV FK ++ R+ + Sbjct: 61 GRNPRTGEAVDVPGKRVPYFKPGKEMRVRLNAE 93 >gi|189182932|ref|YP_001936717.1| DNA-binding protein HU [Orientia tsutsugamushi str. Ikeda] gi|189179703|dbj|BAG39483.1| DNA-binding protein HU [Orientia tsutsugamushi str. Ikeda] Length = 102 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +++ V I K +++ D R + + + + G I I F +F V+ + + Sbjct: 9 EALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAA 68 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R G N +T ++ I VVFK LK + Sbjct: 69 RDGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 102 >gi|189426728|ref|YP_001953904.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189422987|gb|ACD97384.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 93 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 57/92 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++ L++ ++++ ++ KD+ V L I + GE++KI+ F F VK+K +R Sbjct: 2 ALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT + + I+PR+V+ FK S +L++ I Sbjct: 62 GRNPQTGEAITIEPRKVISFKPSVLLRQAINQ 93 >gi|33602439|ref|NP_889999.1| integration host factor beta-subunit [Bordetella bronchiseptica RB50] gi|33576878|emb|CAE33958.1| integration host factor beta-subunit [Bordetella bronchiseptica RB50] Length = 110 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 15 SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVK 74 ++ L+ +D+ V T+ + + + G+ I+I F +F + Q+ R+GRN ++ ++V Sbjct: 3 ARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQVL 62 Query: 75 IDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 + ++V FKA L++R+ D+ G D Sbjct: 63 VPGKQVPHFKAGKELRERV--DLVGNDQGDDS 92 >gi|296444587|ref|ZP_06886551.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296257855|gb|EFH04918.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 141 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +T+TR+ L +++ LSR ++ + + F EI D+ VRGE +K+ SF +F+V+ K Sbjct: 37 GRTLTRAALREAVYSCCPTLSRAEARQILDATFEEISDALVRGEPVKLRSFGSFNVRAKR 96 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RVGRN +T E I R+V+ FKAS +L ++ Sbjct: 97 ERVGRNPKTGVEAPICSRKVLTFKASPVLIAQVNG 131 >gi|291294582|ref|YP_003505980.1| histone family protein DNA-binding protein [Meiothermus ruber DSM 1279] gi|290469541|gb|ADD26960.1| histone family protein DNA-binding protein [Meiothermus ruber DSM 1279] Length = 100 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 44/87 (50%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL+ ++ GL +KD+ V +++ ++ G ++++ F TF V+ + +R G Sbjct: 14 DLIDQVAATAGLKKKDAKAAVDAFLSKVEEALKAGNKVQLTGFGTFEVRSRKARTGVKPG 73 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T Q++KI + FK LK+ + Sbjct: 74 TTQKIKIPASKYPAFKPGKALKETVKK 100 >gi|50843144|ref|YP_056371.1| DNA-binding protein HU [Propionibacterium acnes KPA171202] gi|282855020|ref|ZP_06264352.1| DNA-binding protein HU [Propionibacterium acnes J139] gi|289425014|ref|ZP_06426793.1| DNA-binding protein HU [Propionibacterium acnes SK187] gi|289427803|ref|ZP_06429512.1| DNA-binding protein HU [Propionibacterium acnes J165] gi|295131204|ref|YP_003581867.1| DNA-binding protein HU [Propionibacterium acnes SK137] gi|50840746|gb|AAT83413.1| DNA-binding protein HU [Propionibacterium acnes KPA171202] gi|282581608|gb|EFB86993.1| DNA-binding protein HU [Propionibacterium acnes J139] gi|289154713|gb|EFD03399.1| DNA-binding protein HU [Propionibacterium acnes SK187] gi|289158985|gb|EFD07180.1| DNA-binding protein HU [Propionibacterium acnes J165] gi|291377085|gb|ADE00940.1| DNA-binding protein HU [Propionibacterium acnes SK137] gi|313763392|gb|EFS34756.1| DNA-binding protein HU [Propionibacterium acnes HL013PA1] gi|313773269|gb|EFS39235.1| DNA-binding protein HU [Propionibacterium acnes HL074PA1] gi|313793448|gb|EFS41499.1| DNA-binding protein HU [Propionibacterium acnes HL110PA1] gi|313801153|gb|EFS42416.1| DNA-binding protein HU [Propionibacterium acnes HL110PA2] gi|313808502|gb|EFS46967.1| DNA-binding protein HU [Propionibacterium acnes HL087PA2] gi|313812075|gb|EFS49789.1| DNA-binding protein HU [Propionibacterium acnes HL083PA1] gi|313812345|gb|EFS50059.1| DNA-binding protein HU [Propionibacterium acnes HL025PA1] gi|313814684|gb|EFS52398.1| DNA-binding protein HU [Propionibacterium acnes HL059PA1] gi|313819237|gb|EFS56951.1| DNA-binding protein HU [Propionibacterium acnes HL046PA2] gi|313821091|gb|EFS58805.1| DNA-binding protein HU [Propionibacterium acnes HL036PA1] gi|313823483|gb|EFS61197.1| DNA-binding protein HU [Propionibacterium acnes HL036PA2] gi|313827014|gb|EFS64728.1| DNA-binding protein HU [Propionibacterium acnes HL063PA1] gi|313834714|gb|EFS72428.1| DNA-binding protein HU [Propionibacterium acnes HL056PA1] gi|313837917|gb|EFS75631.1| DNA-binding protein HU [Propionibacterium acnes HL086PA1] gi|314917598|gb|EFS81429.1| DNA-binding protein HU [Propionibacterium acnes HL050PA1] gi|314919646|gb|EFS83477.1| DNA-binding protein HU [Propionibacterium acnes HL050PA3] gi|314924276|gb|EFS88107.1| DNA-binding protein HU [Propionibacterium acnes HL001PA1] gi|314925924|gb|EFS89755.1| DNA-binding protein HU [Propionibacterium acnes HL036PA3] gi|314930281|gb|EFS94112.1| DNA-binding protein HU [Propionibacterium acnes HL067PA1] gi|314956860|gb|EFT01014.1| DNA-binding protein HU [Propionibacterium acnes HL027PA1] gi|314957637|gb|EFT01740.1| DNA-binding protein HU [Propionibacterium acnes HL002PA1] gi|314960899|gb|EFT05000.1| DNA-binding protein HU [Propionibacterium acnes HL002PA2] gi|314963337|gb|EFT07437.1| DNA-binding protein HU [Propionibacterium acnes HL082PA1] gi|314967386|gb|EFT11485.1| DNA-binding protein HU [Propionibacterium acnes HL082PA2] gi|314968980|gb|EFT13078.1| DNA-binding protein HU [Propionibacterium acnes HL037PA1] gi|314974014|gb|EFT18110.1| DNA-binding protein HU [Propionibacterium acnes HL053PA1] gi|314975440|gb|EFT19535.1| DNA-binding protein HU [Propionibacterium acnes HL045PA1] gi|314979461|gb|EFT23555.1| DNA-binding protein HU [Propionibacterium acnes HL072PA2] gi|314982105|gb|EFT26198.1| DNA-binding protein HU [Propionibacterium acnes HL110PA3] gi|314984200|gb|EFT28292.1| DNA-binding protein HU [Propionibacterium acnes HL005PA1] gi|314988445|gb|EFT32536.1| DNA-binding protein HU [Propionibacterium acnes HL005PA2] gi|314988636|gb|EFT32727.1| DNA-binding protein HU [Propionibacterium acnes HL005PA3] gi|315079383|gb|EFT51381.1| DNA-binding protein HU [Propionibacterium acnes HL053PA2] gi|315080039|gb|EFT52015.1| DNA-binding protein HU [Propionibacterium acnes HL078PA1] gi|315083409|gb|EFT55385.1| DNA-binding protein HU [Propionibacterium acnes HL027PA2] gi|315086796|gb|EFT58772.1| DNA-binding protein HU [Propionibacterium acnes HL002PA3] gi|315089443|gb|EFT61419.1| DNA-binding protein HU [Propionibacterium acnes HL072PA1] gi|315090344|gb|EFT62320.1| DNA-binding protein HU [Propionibacterium acnes HL110PA4] gi|315093627|gb|EFT65603.1| DNA-binding protein HU [Propionibacterium acnes HL060PA1] gi|315097786|gb|EFT69762.1| DNA-binding protein HU [Propionibacterium acnes HL038PA1] gi|315098017|gb|EFT69993.1| DNA-binding protein HU [Propionibacterium acnes HL059PA2] gi|315102637|gb|EFT74613.1| DNA-binding protein HU [Propionibacterium acnes HL046PA1] gi|315104472|gb|EFT76448.1| DNA-binding protein HU [Propionibacterium acnes HL050PA2] gi|315106215|gb|EFT78191.1| DNA-binding protein HU [Propionibacterium acnes HL030PA1] gi|315110452|gb|EFT82428.1| DNA-binding protein HU [Propionibacterium acnes HL030PA2] gi|327325389|gb|EGE67194.1| DNA-binding protein HU [Propionibacterium acnes HL096PA2] gi|327325467|gb|EGE67271.1| DNA-binding protein HU [Propionibacterium acnes HL103PA1] gi|327328272|gb|EGE70036.1| DNA-binding protein HU [Propionibacterium acnes HL096PA3] gi|327332409|gb|EGE74145.1| DNA-binding protein HU [Propionibacterium acnes HL097PA1] gi|327443682|gb|EGE90336.1| DNA-binding protein HU [Propionibacterium acnes HL043PA1] gi|327449219|gb|EGE95873.1| DNA-binding protein HU [Propionibacterium acnes HL043PA2] gi|327450187|gb|EGE96841.1| DNA-binding protein HU [Propionibacterium acnes HL013PA2] gi|327451216|gb|EGE97870.1| DNA-binding protein HU [Propionibacterium acnes HL087PA3] gi|327451251|gb|EGE97905.1| DNA-binding protein HU [Propionibacterium acnes HL092PA1] gi|327452573|gb|EGE99227.1| DNA-binding protein HU [Propionibacterium acnes HL083PA2] gi|328751969|gb|EGF65585.1| DNA-binding protein HU [Propionibacterium acnes HL025PA2] gi|328754787|gb|EGF68403.1| DNA-binding protein HU [Propionibacterium acnes HL087PA1] gi|328756757|gb|EGF70373.1| DNA-binding protein HU [Propionibacterium acnes HL020PA1] gi|328761031|gb|EGF74583.1| DNA-binding protein HU [Propionibacterium acnes HL099PA1] gi|332676081|gb|AEE72897.1| DNA-binding protein HU [Propionibacterium acnes 266] Length = 91 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L + I + +GE +++ T ++ +R G Sbjct: 1 MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|240141766|ref|YP_002966245.1| integration host factor (IHF) like DNA-binding protein [Methylobacterium extorquens AM1] gi|240012945|gb|ACS44168.1| integration host factor (IHF) like DNA-binding protein [Methylobacterium extorquens AM1] Length = 163 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV ++ + L KD V+ + I D+ V G+ ++I F F K +R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + ++ V F+ +++R+ Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLK 149 >gi|52842915|ref|YP_096714.1| integration host factor subunit alpha [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81680386|sp|Q5ZS10|IHFA_LEGPH RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|52630026|gb|AAU28767.1| integration host factor (IHF) alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 99 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++++ + +++ E L++ + V F E+ + G+ +K+S F F ++ K R Sbjct: 4 NALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ ++ RRVV FK LK +I Sbjct: 64 PGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEK 96 >gi|218259892|ref|ZP_03475424.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii DSM 18315] gi|218224857|gb|EEC97507.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii DSM 18315] Length = 96 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++++++ GL ++ + + + + + ++ E I + F T + + R+ Sbjct: 1 MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLVGFGTLIPRPQTERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V I R V FK L I Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYLLDAINK 91 >gi|254293751|ref|YP_003059774.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] gi|254042282|gb|ACT59077.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] Length = 103 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 64/99 (64%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTITR+D+V + E GL+R+DS+ ++ + +C+ V ++K++ F F V++K +R Sbjct: 4 KTITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 VGRN +T +E I RRVV FK S ++++R+ + ++ Sbjct: 64 VGRNPKTGKEAPITARRVVTFKPSPLMRRRVEAALASKE 102 >gi|225874874|ref|YP_002756333.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] gi|225793630|gb|ACO33720.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196] Length = 89 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D++ + + GL R + V T+F + + G+ I++ F F+V+ + + +G Sbjct: 1 MIKQDIIHHVIERTGLPRTKAEHAVDTVFESLKHALAEGQRIELRGFGVFNVRPRKTGIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T EV I P + V FK L Sbjct: 61 RNPRTGTEVSITPGKAVRFKPGKDL 85 >gi|116748864|ref|YP_845551.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|116697928|gb|ABK17116.1| histone family protein DNA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 96 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 53/92 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+++++K G++ K + V F + ++ +R + ++I F +F VK G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + ++++ +++ FK LK+R+ Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVNGS 92 >gi|126661201|ref|ZP_01732276.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|126617496|gb|EAZ88290.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] Length = 91 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LVK+I+ E G + T+ + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + + I + F A I K+++ Sbjct: 61 KNPQTGEPLTIPATTIPAFSAGKIFKEKVK 90 >gi|315419719|gb|ADU15829.1| histone-like protein [Streptococcus gordonii] Length = 91 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 49/89 (55%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ ++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK I Sbjct: 63 NPQTGKEIKIAASKVPAFKAGKALKDVIK 91 >gi|54295550|ref|YP_127965.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens] gi|54298700|ref|YP_125069.1| integration host factor subunit alpha [Legionella pneumophila str. Paris] gi|148358554|ref|YP_001249761.1| integration host factor subunit alpha [Legionella pneumophila str. Corby] gi|296108357|ref|YP_003620058.1| integration host factor (IHF) alpha subunit [Legionella pneumophila 2300/99 Alcoy] gi|81679131|sp|Q5WT88|IHFA_LEGPL RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|81679385|sp|Q5X1H9|IHFA_LEGPA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|172047871|sp|A5IAL5|IHFA_LEGPC RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|53752485|emb|CAH13917.1| hypothetical protein lpp2764 [Legionella pneumophila str. Paris] gi|53755382|emb|CAH16878.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens] gi|148280327|gb|ABQ54415.1| integration host factor (IHF) alpha subunit [Legionella pneumophila str. Corby] gi|295650259|gb|ADG26106.1| integration host factor (IHF) alpha subunit [Legionella pneumophila 2300/99 Alcoy] gi|307611586|emb|CBX01268.1| hypothetical protein LPW_29661 [Legionella pneumophila 130b] Length = 97 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 50/93 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++++ + +++ E L++ + V F E+ + G+ +K+S F F ++ K R Sbjct: 2 NALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ ++ RRVV FK LK +I Sbjct: 62 PGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEK 94 >gi|104784354|ref|YP_610852.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48] gi|95113341|emb|CAK18069.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48] Length = 98 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L I+++ L+++ + + + + I + + + + + F TF + +G+R G Sbjct: 1 MRKPELAAVIAEKADLTKEKANIVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 +N QT Q VKI V FK L+ + + K Sbjct: 60 KNPQTGQPVKIKASNTVAFKPGKNLRDSVNAPAKPAKKK 98 >gi|332882318|ref|ZP_08449946.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679702|gb|EGJ52671.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 106 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 51/102 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L +++++ GL++ ++ + + + + + I + F +F VKQK +R G Sbjct: 1 MNKKELCNALAEKTGLTKTEAQKAFNAVIEIVANEMKKNGRITLIGFGSFSVKQKAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 N + + I ++VV FK S L + RGRK ++ Sbjct: 61 MNPTSFAPIDIPAKKVVNFKPSIYLNHLLNVKKRGRKRKDEN 102 >gi|297559169|ref|YP_003678143.1| histone family protein DNA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843617|gb|ADH65637.1| histone family protein DNA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 93 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +IS G +K +T V + + I + G+ + I+ F F ++ +R Sbjct: 1 MNKRDLIDAISDRLG-DKKTATEAVNAVLDTIQATVASGDKVAITGFGVFEKSERAARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T + + V F+A + K + D + Sbjct: 60 RNPATGATINVPASFVPKFRAGADFKALVNGDKK 93 >gi|329906686|ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327547181|gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 92 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Query: 14 ISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 +++ + L KD+ V T+ + + D+ G+ I+I F +F + + R+GRN ++ ++ Sbjct: 1 MAERYPQLVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEK 60 Query: 73 VKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 V + +RV FK L++R+ D M G+ +D Sbjct: 61 VMVPEKRVPHFKPGKELRERV-DAMVGQPIIED 92 >gi|239907543|ref|YP_002954284.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239797409|dbj|BAH76398.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 92 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K++ +++ L + + FV + F I + V G+ +++ F +F VK+ G Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T +V++ P+++ FK K + + Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLNRE 92 >gi|299139526|ref|ZP_07032700.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] gi|298598454|gb|EFI54618.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] Length = 89 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ + + GL R + V +F + ++ + I++ F F VK + + VG Sbjct: 1 MIKQDLIQRVVERTGLPRTKAEAAVDAIFEAMKNALGNSDRIELRGFGVFTVKPRKTGVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T EV I P + V FK L Sbjct: 61 RNPRTGAEVTITPGKAVRFKPGKEL 85 >gi|23009809|ref|ZP_00050720.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 99 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 51/92 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ +S+LV +I+ + LS+ D+ + + + +S +GEA+K++ + ++ +R Sbjct: 8 SLNKSELVSAIASKADLSKADAEKALNAFQEVLIESLGKGEAVKVTGLLSVERVERAART 67 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ I V A S+LKK + Sbjct: 68 GRNPRTGEEISIPAGYGVKISAGSLLKKAVAK 99 >gi|319645785|ref|ZP_08000015.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] gi|317391535|gb|EFV72332.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2] Length = 91 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 44/72 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ ++++ L++KD V + F+ I + GE +K+ F +F V+++ +R G Sbjct: 1 MNKKELIGAVAEATELTKKDVELVVDSTFDVITSALKDGEKVKVHGFGSFEVRERAARKG 60 Query: 65 RNLQTNQEVKID 76 RN Q+ +E++I Sbjct: 61 RNPQSGEEIEIP 72 >gi|294023740|ref|YP_003547059.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] gi|292677520|dbj|BAI99036.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S] Length = 91 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL ++++ GLS+ D+ + V T+F+ I ++A +G+ I ++ F F VK R G Sbjct: 1 MNNSDLAEAVAGAHGLSKADAKKVVDTVFSTIGEAAAKGDEISLNGFGKFKVKASSERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + + I + + F + ++K ++ Sbjct: 61 RNPATGETITIKASKKLGFTPAKVIKDKLNG 91 >gi|114798281|ref|YP_759882.1| putative integration host factor subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114738455|gb|ABI76580.1| putative integration host factor, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 98 Score = 109 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS +T+TR+++ +I +E G++R++S + + I + + + +K++ F F V+ K Sbjct: 1 MSDRTLTRAEVTDAIVREVGVTRQESADLLDRTLDLIGAALEQEQEVKLARFGNFVVRSK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R GRN +T +E I RRVV F+ S +LK ++ D Sbjct: 61 AAREGRNPKTGEEAPIAARRVVTFRPSPMLKSQVGGD 97 >gi|313829872|gb|EFS67586.1| DNA-binding protein HU [Propionibacterium acnes HL007PA1] Length = 91 Score = 109 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L ++I + +GE +++ T ++ +R G Sbjct: 1 MTKSELIKTVAKQASLTEAQTNEAVKALTDDITAALAKGEKVQLPGLFTAETVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|320354295|ref|YP_004195634.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320122797|gb|ADW18343.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 95 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 4 TITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T++DLV+ + K L++ ST V T S + GE + +S F F++K K SR Sbjct: 2 TLTKADLVQQVYKTHPNLTKSQSTESVETFLALSKSSLITGEDLLLSGFGKFNIKDKKSR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT E+ +D RRVV FK S IL+ RI D Sbjct: 62 RGRNPQTGNELTLDARRVVTFKPSGILRSRINSD 95 >gi|296270760|ref|YP_003653392.1| histone family protein DNA-binding protein [Thermobispora bispora DSM 43833] gi|296093547|gb|ADG89499.1| histone family protein DNA-binding protein [Thermobispora bispora DSM 43833] Length = 98 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV++I+ G +K +T V + I ++ RG+ + I+ F F + K +R Sbjct: 1 MNKRELVEAIADRVG-DKKTATEAVNAVLETIQNAVARGDKVSITGFGAFEMVHKPARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN T +K++ F+ + K+ + + K Sbjct: 60 RNPSTGAPIKVEESWAPRFRPGAEFKELVNAGGKAAKKK 98 >gi|330813819|ref|YP_004358058.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486914|gb|AEA81319.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 93 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ IS LS+ D+ R + N I D+ + +KI+ F T+ V ++ +R G Sbjct: 1 MNKKQLIAKISASMNLSKADAERTFDGITNIILDALKNDDNVKIAGFGTYKVAKRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + ++I + V F + LK+ Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALKEMFNK 91 >gi|194098875|ref|YP_002001939.1| integration host factor subunit beta [Neisseria gonorrhoeae NCCP11945] gi|240115896|ref|ZP_04729958.1| integration host factor subunit beta [Neisseria gonorrhoeae PID18] gi|260440289|ref|ZP_05794105.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2] gi|193934165|gb|ACF29989.1| integration host factor beta-subunit [Neisseria gonorrhoeae NCCP11945] Length = 92 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 L + + + L KD V L + + S RG+ I+I F +F + + +R+GRN Sbjct: 4 LAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 +T + V++ + V FK L++R+ Sbjct: 64 KTGERVEVPEKHVPHFKPGKELRERV 89 >gi|206890254|ref|YP_002249563.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742192|gb|ACI21249.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 92 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ +SK+ L++K + +F+ + ++ RGE I+I FA F VKQ+ R+ Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +++K+ +R + FK S LK+ + Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALNK 92 >gi|313207044|ref|YP_004046221.1| histone family protein DNA-binding protein [Riemerella anatipestifer DSM 15868] gi|312446360|gb|ADQ82715.1| histone family protein DNA-binding protein [Riemerella anatipestifer DSM 15868] gi|315022562|gb|EFT35589.1| DNA-binding protein HU [Riemerella anatipestifer RA-YM] gi|325335519|gb|ADZ11793.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer RA-GD] Length = 97 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +IS + G+ + D+ + + EI S G + + F +F +K + ++ G Sbjct: 1 MTKAELVNTISNKLGIEKNDTQKVIEAFMQEIRGSLYEGNNVYLRGFGSFIIKTRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N ++I + FK S +R+ + + Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKSFAERVKTKVPVK 96 >gi|182678712|ref|YP_001832858.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634595|gb|ACB95369.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 122 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 1/105 (0%) Query: 3 KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT TR+DL+ +I LSR + EI ++ +RGE +K+ SF F V+ K Sbjct: 18 KTATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRE 77 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R+GRN +T EV I PRRV+ FKAS +L + + +D Sbjct: 78 RIGRNPRTGVEVPIKPRRVLTFKASPVLAASVNGTQVPVEDGHED 122 >gi|269925821|ref|YP_003322444.1| histone family protein DNA-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269789481|gb|ACZ41622.1| histone family protein DNA-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 84 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 45/81 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+ +++ G+++ + + +EI S +GE + I F TF V ++ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 67 LQTNQEVKIDPRRVVVFKASS 87 +T +E++I + V F+ S Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84 >gi|302035785|ref|YP_003796107.1| transcriptional dual regulator HU-alpha [Candidatus Nitrospira defluvii] gi|300603849|emb|CBK40181.1| Transcriptional dual regulator HU-alpha [Candidatus Nitrospira defluvii] Length = 90 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ ++ G+++ +T + + S +G+ + + +F TF + ++ +R+G Sbjct: 1 MTKEELIAKMANSAGITKVAATVALEAFTGAVTTSLKKGKRVTLVNFGTFTISKRKARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +KI R+ F A LK + Sbjct: 61 RNPRTGEALKIPAARIPKFSAGKELKAAVK 90 >gi|154490160|ref|ZP_02030421.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC 43184] gi|154089052|gb|EDN88096.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC 43184] Length = 96 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 44/96 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++++++ GL ++ + + + + + ++ E I + F T + + R+ Sbjct: 1 MNKAELIEALAQRSGLQKQKAKKLLEAYVDIVTEAMSHNEEIVLIGFGTLIPRPQTERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN +T V I R V FK L I + Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKYLLDAINKPEEKK 96 >gi|229586413|ref|YP_002844914.1| DNA-binding protein HU [Rickettsia africae ESF-5] gi|228021463|gb|ACP53171.1| DNA-binding protein HU [Rickettsia africae ESF-5] Length = 138 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + + + L++ ++ + + + + + + I I+ F + Sbjct: 38 KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 97 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + +R GRN +T +++ID F+A +K+ Sbjct: 98 FEIHHRKAREGRNPKTGAKMQIDAYNQPTFRAGRKMKEA 136 >gi|118580201|ref|YP_901451.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118502911|gb|ABK99393.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 91 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 51/89 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS+L++ ++ +S K + +T +F+ + ++ V+ E I+I +F +K+ + G Sbjct: 1 MNRSELIEHLALRKDISHKRAEEIITLIFSAMTEAMVKNERIEIRGLGSFVIKEYDTYTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + P+++ FK LK+ + Sbjct: 61 RNPKTGEPILVRPKKLPFFKVGKELKEMV 89 >gi|158522867|ref|YP_001530737.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] gi|158511693|gb|ABW68660.1| histone family protein DNA-binding protein [Desulfococcus oleovorans Hxd3] Length = 90 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 +T+++L+ ++ + +++ + + + + + + + E + + F TF + +R Sbjct: 1 MTKAELIDKMAADAKITKMAAGKALDAFMDGVTKALKKKEGKVTLVGFGTFAKAHRKART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + +KI VV F+ L+ + Sbjct: 61 GRNPQTGKPIKIKACNVVKFRPGKKLRDDV 90 >gi|325954785|ref|YP_004238445.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] gi|323437403|gb|ADX67867.1| histone family protein DNA-binding protein [Weeksella virosa DSM 16922] Length = 97 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS + GL + D+ R + +E+ S GE + + F +F +K++ + G Sbjct: 1 MTKADIVNNISSKLGLEKGDTQRVIEAFMDEVIKSLENGENVYLRGFGSFTIKKRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ + I V FK + + + ++ Sbjct: 61 RNITKGTSIIIPAHNVPGFKPAKSFVESVKAKVK 94 >gi|320104532|ref|YP_004180123.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC 43644] gi|319751814|gb|ADV63574.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC 43644] Length = 126 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ D+VK IS E GL++ + + V + I + V+ I++ +F F VK++ +R Sbjct: 1 MTKKDIVKRISDEVGLTQLKTKQIVQLTLDAIIQTLVQEGQIELRNFGVFKVKRRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 RN +T +V + + VV FK ++ + R N DD+ Sbjct: 61 RNPRTGAKVTVPAKTVVTFKPGKEMEDLV------RSMNPDDLP 98 >gi|330999754|ref|ZP_08323462.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] gi|329573916|gb|EGG55496.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] Length = 92 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G S+ D + L +I + G+ I + F TF ++ +R G Sbjct: 1 MNKTELIAAVAEASGKSKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARAG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T ++I F A K + Sbjct: 61 RNPATGATIQIPASVQPKFVAGKQFKDALN 90 >gi|323485131|ref|ZP_08090483.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum WAL-14163] gi|323694024|ref|ZP_08108208.1| histone family protein DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323401561|gb|EGA93907.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum WAL-14163] gi|323501960|gb|EGB17838.1| histone family protein DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 92 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV S+S + GL+ + S + + L N I G +++ F F V + R+ Sbjct: 1 MNKRQLVDSMSAKSGLTTRQSEKALNGLMNVIHTELSSGGNVQLVGFGVFRVADRKDRIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + +KI R+ VF+A S LK + Sbjct: 61 RNPQTGEAMKIKGRKAPVFRAGSTLKNVVNG 91 >gi|313828230|gb|EFS65944.1| DNA-binding protein HU [Propionibacterium acnes HL063PA2] gi|314914530|gb|EFS78361.1| DNA-binding protein HU [Propionibacterium acnes HL005PA4] Length = 91 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+K+++K+ L+ + V L + I + +GE +++ T ++ +R G Sbjct: 1 MTKSELIKTVAKQASLTEAQTNEAVKALPDVITAALAKGEKVQLPGLFTAETVERPARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I + V ASS LKK + D Sbjct: 61 RNPRTGESMTIPAHKAVKISASSTLKKAVAD 91 >gi|218129554|ref|ZP_03458358.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697] gi|217988284|gb|EEC54607.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM 20697] Length = 106 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K+++ GL D+++ ++ N + D RGE + S F V++ +R G Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI-MDDMRGRKCNKDD 106 RN T ++I R+VV F L++ + + GR+ D Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAVIKKGIHGRRARCTD 103 >gi|126661383|ref|ZP_01732446.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] gi|126617341|gb|EAZ88147.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110] Length = 91 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 42/90 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LVK+I+ E G + T+ + I ++ G+ + + F TF + + R G Sbjct: 1 MNKEQLVKAIAAETGQPQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N QT + + I + F A K+++ Sbjct: 61 KNPQTGESLTIPATTIPAFSAGKAFKEKVK 90 >gi|271964928|ref|YP_003339124.1| hypothetical protein Sros_3445 [Streptosporangium roseum DSM 43021] gi|270508103|gb|ACZ86381.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 106 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 40/82 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ + E GLSR+ + + + I + + + I F +F + K +R G Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN QT + ++I FK S Sbjct: 72 RNPQTGEPLEIAETWTAKFKPS 93 >gi|118594696|ref|ZP_01552043.1| Integration host factor, beta subunit [Methylophilales bacterium HTCC2181] gi|118440474|gb|EAV47101.1| Integration host factor, beta subunit [Methylophilales bacterium HTCC2181] Length = 92 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L+ ++ F L KD+ V + + + + + + I+I F +F + + SRV Sbjct: 1 MTKSKLINILASRFNQLVHKDAELSVKAILDSMSQALINKDRIEIRGFGSFSLNFRPSRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN ++ +V + + V FKA L+ R+ Sbjct: 61 GRNPKSGAQVHVPEKFVPHFKAGKELRVRV 90 >gi|157964238|ref|YP_001499062.1| DNA-binding protein HU [Rickettsia massiliae MTU5] gi|157844014|gb|ABV84515.1| DNA-binding protein HU [Rickettsia massiliae MTU5] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 3 KTITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 K + +++ + ++ L++ ++ + + + + + + I I+ F +F + Sbjct: 43 KKMNKTEFIAFMTDHGHTSYKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIH 102 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + +R GRN +T ++KID F+A +K+ Sbjct: 103 HRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 137 >gi|301062187|ref|ZP_07202869.1| DNA-binding protein HU 1 [delta proteobacterium NaphS2] gi|300443699|gb|EFK07782.1| DNA-binding protein HU 1 [delta proteobacterium NaphS2] Length = 88 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ +SK ++K++ V +F+ I D+ + + I F TF V+++ +R G Sbjct: 1 MNKGDLINEVSKVVS-TKKEAQAAVDCVFSSITDALKGKDKVTIIGFGTFKVEERKARKG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N QT + + I + V F A LK+ + Sbjct: 60 INPQTGKSIDIAAKTVPKFVAGKALKESV 88 >gi|322387987|ref|ZP_08061594.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779] gi|322392079|ref|ZP_08065541.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780] gi|321141260|gb|EFX36758.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779] gi|321144979|gb|EFX40378.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780] Length = 91 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + + GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRKRAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI +V FKA LK+ + Sbjct: 63 NPQTGKEIKIKASKVPAFKAGKALKEAVK 91 >gi|323342075|ref|ZP_08082308.1| integration host factor subunit alpha [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464500|gb|EFY09693.1| integration host factor subunit alpha [Erysipelothrix rhusiopathiae ATCC 19414] Length = 94 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 48/94 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+T + L +SI+ + +S+K + F+ T +E+ + + ++ F F V+ + Sbjct: 1 MSETYNKKLLSESIAGKLDISKKQANEFIETFLDEVKEILENKGTVDLAGFGKFEVRHRA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R G N QT ++++I V FK + LK + Sbjct: 61 ERDGFNPQTKEKIRIAASHSVGFKPAKALKDAVK 94 >gi|301064005|ref|ZP_07204470.1| integration host factor subunit beta [delta proteobacterium NaphS2] gi|300441916|gb|EFK06216.1| integration host factor subunit beta [delta proteobacterium NaphS2] Length = 92 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+++++KE L + + V T+F E+ + E ++I +F VK G Sbjct: 1 MNKSELIEALAKEKDLPLRKAEEVVNTVFGEMEKALTDEERVEIRGLGSFKVKHYDGYKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + + +++ FK LK+R+ Sbjct: 61 RNPKTGEIINVGRKKLPFFKVGKELKERV 89 >gi|313672337|ref|YP_004050448.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939093|gb|ADR18285.1| histone family protein DNA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 92 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ I++E LS++ V +FN I + E ++I F +F V++K + Sbjct: 1 MNKSELIEKIAEENPHLSKRQVEFIVNGVFNSIKSALESDEKVEIRGFGSFKVRKKNRKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++V ++ + V FK S +K ++ Sbjct: 61 ARNPKTGEKVIVEAKSVPYFKPSREIKLALLK 92 >gi|308274087|emb|CBX30686.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.] Length = 100 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T+++LV +I+ + +++ + + + + + + + + F TF ++ +R Sbjct: 11 MTKAELVDAIAADAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRAARK 70 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E+KI R VV FKA LK+ + Sbjct: 71 GRNPQTGAEIKIKARNVVKFKAGKKLKEAV 100 >gi|42524742|ref|NP_970122.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus HD100] gi|39576952|emb|CAE78181.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus HD100] Length = 90 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ E +S+ + + I S +G+ +K+ F TF ++ +R G Sbjct: 1 MNKAQLIEKIATETKVSKAQAEAILDCAVENIKKSVKKGDDVKLVGFGTFTKAKRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + +KI F+A + K + Sbjct: 61 RNPQTGKAIKIPAAWAPKFRAGAEFKAMVK 90 >gi|332284737|ref|YP_004416648.1| integration host factor beta-subunit [Pusillimonas sp. T7-7] gi|330428690|gb|AEC20024.1| integration host factor beta-subunit [Pusillimonas sp. T7-7] Length = 103 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 45/86 (52%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 +D+ V T+ + + + G+ I+I F +F + ++ R+GRN ++ ++V++ ++V Sbjct: 4 RDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSERAPRIGRNPKSGEKVQVPGKQVPH 63 Query: 83 FKASSILKKRIMDDMRGRKCNKDDVT 108 FK L++R+ + D + Sbjct: 64 FKPGKELRERVDSAYDQEAESAADES 89 >gi|59801031|ref|YP_207743.1| IhfB [Neisseria gonorrhoeae FA 1090] gi|239999161|ref|ZP_04719085.1| integration host factor subunit beta [Neisseria gonorrhoeae 35/02] gi|240013931|ref|ZP_04720844.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI18] gi|240016373|ref|ZP_04722913.1| integration host factor subunit beta [Neisseria gonorrhoeae FA6140] gi|240080492|ref|ZP_04725035.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19] gi|240113140|ref|ZP_04727630.1| integration host factor subunit beta [Neisseria gonorrhoeae MS11] gi|240118194|ref|ZP_04732256.1| integration host factor subunit beta [Neisseria gonorrhoeae PID1] gi|240121500|ref|ZP_04734462.1| integration host factor subunit beta [Neisseria gonorrhoeae PID24-1] gi|240123742|ref|ZP_04736698.1| integration host factor subunit beta [Neisseria gonorrhoeae PID332] gi|240125933|ref|ZP_04738819.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-92-679] gi|254493934|ref|ZP_05107105.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291] gi|268599221|ref|ZP_06133388.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11] gi|297250508|ref|ZP_06864452.2| integration host factor subunit beta [Neisseria polysaccharea ATCC 43768] gi|59717926|gb|AAW89331.1| integration host factor beta subunit [Neisseria gonorrhoeae FA 1090] gi|226512974|gb|EEH62319.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291] gi|268583352|gb|EEZ48028.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11] gi|296838821|gb|EFH22759.1| integration host factor subunit beta [Neisseria polysaccharea ATCC 43768] gi|316984100|gb|EFV63078.1| integration host factor subunit beta [Neisseria meningitidis H44/76] gi|317164448|gb|ADV07989.1| integration host factor subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 98 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 L + + + L KD V L + + S RG+ I+I F +F + + +R+GRN Sbjct: 4 LAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 +T + V++ + V FK L++R+ Sbjct: 64 KTGERVEVPEKHVPHFKPGKELRERV 89 >gi|124516626|gb|EAY58134.1| putative histone-like DNA-binding protein [Leptospirillum rubarum] Length = 91 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRV 63 + +++LV I+ +++ + + I + + GE + + F TF ++ +R Sbjct: 1 MKKAELVDKIASSAKITKSQANDALNAALETIKKALKKDGEKVTLVGFGTFSTVKRKART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+KI RV F A K I Sbjct: 61 GRNPRTGKEIKIPAMRVPKFSAGKAFKGAIK 91 >gi|218886655|ref|YP_002435976.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757609|gb|ACL08508.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 97 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 53/95 (55%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++++V +I ++ +R + V +L + + + A+ IS F F K + Sbjct: 3 GKTLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QT++ + + PR+VVVF+ S + + D+ Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLSRKFRAELNDE 97 >gi|15892135|ref|NP_359849.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7] gi|15619264|gb|AAL02750.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7] Length = 139 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + + + L++ ++ + + + + + + I I+ F + Sbjct: 39 KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 98 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + +R GRN +T ++KID F+A +K+ Sbjct: 99 FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 137 >gi|85859597|ref|YP_461799.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] gi|85722688|gb|ABC77631.1| DNA-binding protein HU [Syntrophus aciditrophicus SB] Length = 93 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 48/90 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ + + +SRK+ V + F I +G + IS F + V+ K R G Sbjct: 3 LTKNEMMTMLYNQLNISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +++ I R+VV FKAS L I Sbjct: 63 RNPQTGEDLTITARKVVTFKASPNLISSIN 92 >gi|325125586|gb|ADY84916.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 80 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 42/74 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +++LV ++ + L++KD + V +F I + +GE +++ F TF V+ G+R GR Sbjct: 3 NKAELVSEVAAKTKLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRHLGARKGR 62 Query: 66 NLQTNQEVKIDPRR 79 N QT E +I + Sbjct: 63 NPQTGAENEIPASK 76 >gi|315651174|ref|ZP_07904205.1| DNA-binding protein HU [Eubacterium saburreum DSM 3986] gi|315486572|gb|EFU76923.1| DNA-binding protein HU [Eubacterium saburreum DSM 3986] Length = 93 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + R++L+ +++K+ G +++K++ + + + + I++ F TF + R Sbjct: 1 MNRTELIDAMAKKMGDSVTKKEAESALKAFVDVVTEELTNKGKIQLVGFGTFETSVRPER 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +K+ V FK LK + + Sbjct: 61 EVRNPRTGETMKVAESVVAKFKPGKALKDAVNN 93 >gi|222824223|ref|YP_002575797.1| DNA-binding protein HU [Campylobacter lari RM2100] gi|58979407|gb|AAW83368.1| DNA-binding protein HU [Campylobacter lari] gi|58979429|gb|AAW83379.1| DNA-binding protein HU [Campylobacter lari] gi|222539445|gb|ACM64546.1| DNA-binding protein HU [Campylobacter lari RM2100] Length = 100 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + I D +G++I F TF V ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDAGAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T +K+ +V FK L Sbjct: 61 RVPSTGATIKVPATKVAKFKVGKNL 85 >gi|91217978|ref|ZP_01254930.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755] gi|91183836|gb|EAS70227.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755] Length = 96 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 51/96 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS + GL + + V T +E+ +S G+ + + F +F VK + + G Sbjct: 1 MTKADIVANISDKLGLEKGEVQATVETFMDEVKNSLEGGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + I + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIFVEGVKQNVEVK 96 >gi|148244734|ref|YP_001219428.1| integration host factor, alpha subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326561|dbj|BAF61704.1| integration host factor, alpha subunit [Candidatus Vesicomyosocius okutanii HA] Length = 109 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 53/93 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +IT+ D+ + K ++ + F++I + GE++K+SSF F +++K SRV Sbjct: 2 SITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V+I RRVVVFK+ LK D Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLKLATQKD 94 >gi|188591467|ref|YP_001796066.1| HU, DNA-binding transcriptional regulator, beta subunit [Cupriavidus taiwanensis] gi|170938862|emb|CAP63863.1| HU, DNA-binding transcriptional regulator, beta subunit [Cupriavidus taiwanensis LMG 19424] Length = 92 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ +I+ GL++ + + + + I D+ RG+A+ + F +F ++G R+ Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T +++ +D + V F+ K Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91 >gi|14194637|sp|Q9XB20|DBH_STRGN RecName: Full=DNA-binding protein HU gi|5209334|gb|AAD40811.1|L40356_1 histone-like DNA-binding protein [Streptococcus gordonii] Length = 91 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ ++ L++KDS V +F + + +GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E KI +V FKA LK + Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAVK 91 >gi|320353752|ref|YP_004195091.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320122254|gb|ADW17800.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 90 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+S+++ +S+ + + + + + D+ +G+ + + F TF ++ R Sbjct: 1 MNKKELVESMAEAAEISKAAAEKALNGMLMAVSDALAKGDKVTLVGFGTFSTVKRTERKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +N +T ++I + + FK S L + Sbjct: 61 KNPRTGAMIEIPSKTIAKFKPGSKLSDAVN 90 >gi|58979423|gb|AAW83376.1| DNA-binding protein HU [Campylobacter lari] gi|58979425|gb|AAW83377.1| DNA-binding protein HU [Campylobacter lari] gi|58979427|gb|AAW83378.1| DNA-binding protein HU [Campylobacter lari] gi|58979431|gb|AAW83380.1| DNA-binding protein HU [Campylobacter lari] gi|58979433|gb|AAW83381.1| DNA-binding protein HU [Campylobacter lari] gi|58979469|gb|AAW83399.1| DNA-binding protein HU [Campylobacter lari] gi|58979471|gb|AAW83400.1| DNA-binding protein HU [Campylobacter lari] Length = 100 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + I D +G++I F TF V ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVIATITDVLAKGDSISFIGFGTFSVAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T +K+ +V FK L Sbjct: 61 RVPSTGATIKVPATKVAKFKVGKNL 85 >gi|51244752|ref|YP_064636.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54] gi|50875789|emb|CAG35629.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54] Length = 97 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 50/95 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + + D++ S+S+E + ++D + + I ++ R +++ F +F V+ + R Sbjct: 2 KRMLKKDIIDSVSEELSMQKQDVSVAADVILETISNALARDRRVELRGFGSFSVRSRKPR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +N +T Q + I RR + F S LK+ ++ DM Sbjct: 62 TTKNPRTGQVMDIPERRTLHFTMSKSLKESLISDM 96 >gi|310780405|ref|YP_003968737.1| histone family protein DNA-binding protein [Ilyobacter polytropus DSM 2926] gi|309749728|gb|ADO84389.1| histone family protein DNA-binding protein [Ilyobacter polytropus DSM 2926] Length = 91 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + VK ++ S+ D+ R + + D G+ + + F V ++ +R+ Sbjct: 1 MTKKEFVKLFFEKGEFESKADAERKLDAFLTTVEDVLNDGDDVNFIGWGKFEVAERAARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+KI+ ++VV FKA L ++ Sbjct: 61 GRNPKTGEEIKIEAKKVVKFKAGKKLNDKVN 91 >gi|315638696|ref|ZP_07893870.1| DNA-binding protein HU [Campylobacter upsaliensis JV21] gi|58979347|gb|AAW83338.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979399|gb|AAW83364.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979401|gb|AAW83365.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979403|gb|AAW83366.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979495|gb|AAW83412.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979497|gb|AAW83413.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979499|gb|AAW83414.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979501|gb|AAW83415.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979503|gb|AAW83416.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979505|gb|AAW83417.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979507|gb|AAW83418.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979509|gb|AAW83419.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979511|gb|AAW83420.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979513|gb|AAW83421.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979515|gb|AAW83422.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979517|gb|AAW83423.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979519|gb|AAW83424.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979521|gb|AAW83425.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979523|gb|AAW83426.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979525|gb|AAW83427.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979527|gb|AAW83428.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979529|gb|AAW83429.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979553|gb|AAW83441.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979577|gb|AAW83453.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979579|gb|AAW83454.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979583|gb|AAW83456.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979585|gb|AAW83457.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979587|gb|AAW83458.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979597|gb|AAW83463.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979603|gb|AAW83466.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979605|gb|AAW83467.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|315481320|gb|EFU71950.1| DNA-binding protein HU [Campylobacter upsaliensis JV21] Length = 98 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKSL 85 >gi|262276977|ref|ZP_06054770.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha proteobacterium HIMB114] gi|262224080|gb|EEY74539.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha proteobacterium HIMB114] Length = 91 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV IS LS+ D+ R ++ N I D+ +A+KI+ F T+ V ++ +R G Sbjct: 1 MNKKQLVAKISSTLNLSKADAERTFDSITNIILDALKDDDAVKIAGFGTYKVAKRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + ++I + V F + LK Sbjct: 61 RNPRTGETIQISASQKVKFLPAKALKDMFNK 91 >gi|117926043|ref|YP_866660.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609799|gb|ABK45254.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 53/89 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +++++ L ++ + V +FNE+ + +GE +++ F F + + R Sbjct: 1 MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T ++V ++P+ V FK ++KR+ Sbjct: 61 KNPKTGEKVNVEPKTAVHFKPGLDMRKRV 89 >gi|254294205|ref|YP_003060228.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] gi|254042736|gb|ACT59531.1| histone family protein DNA-binding protein [Hirschia baltica ATCC 49814] Length = 88 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L K +++ +++ ++ R V + + I +GE + ++ F TF K + R G Sbjct: 1 MNKSELTKQVAEAASMTQSEAGRAVDAVLDTISSELKKGEQVALAGFGTFLAKTREERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN T + + I + FK +S+LK Sbjct: 61 RNPATGKPMTIPKKTSASFKPASVLKD 87 >gi|163787183|ref|ZP_02181630.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1] gi|159877071|gb|EDP71128.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1] Length = 96 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV IS + G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADLVAKISDKLGIEKGDVQATVETFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N +KI + FK + + + + ++ Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFLEGVKSNVE 94 >gi|74316025|ref|YP_313765.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] gi|74055520|gb|AAZ95960.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC 25259] Length = 98 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ + E +S+ + R + + + + +G+++ + F TF ++ +R G Sbjct: 1 MNKSELIDFAAAEADISKAAAGRALDAILAAVTKAVAKGDSVTLVGFGTFKSSKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN QT E+KI V F A + Sbjct: 61 RNPQTGNEIKIAATTVPRFTAGAGF 85 >gi|51244670|ref|YP_064554.1| DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54] gi|50875707|emb|CAG35547.1| probable DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54] Length = 121 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 58/91 (63%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +S+L++++S++ + +++ T+ + + ++ +G++I+I F +F VKQ S Sbjct: 25 ENMNKSELIEALSQDVNIPHREAAAITNTVIDTMTEALAKGDSIEIRGFGSFVVKQYESY 84 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +++K+ P+++ FK L++++ Sbjct: 85 EGRNPKTGKKIKVKPKKLPFFKVGKDLREQV 115 >gi|295690480|ref|YP_003594173.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] gi|295432383|gb|ADG11555.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] Length = 92 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + SDLV + ++ + L++ + + +F I D+AV+G+ + I F F V+ K +R Sbjct: 1 MNVSDLVDAAVAADDKLTKTQAKAIIDGVFKSISDAAVKGDEVSIPGFGKFKVQAKPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + V F + LK + Sbjct: 61 GRNPATGATIEIAASKKVAFTPAKQLKDAVNG 92 >gi|332881402|ref|ZP_08449052.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680778|gb|EGJ53725.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 107 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 42/70 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++ GL++ D+ + + + I ++ +G+ I + F TF V ++ +R G Sbjct: 18 MNKTELINAIAENAGLNKADAKKALDATISAISEALKKGDKIALVGFGTFSVNERPARTG 77 Query: 65 RNLQTNQEVK 74 N +T +++ Sbjct: 78 INPRTKEQIT 87 >gi|295690336|ref|YP_003594029.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] gi|295432239|gb|ADG11411.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] Length = 92 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + SDLV + ++ E L++ + + +F + ++AV+GE + I F F V+ K +R Sbjct: 1 MNVSDLVDAAVAAEPKLTKAQAKALIDGVFKALTEAAVKGEEVSIPGFGKFKVQAKPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + V F + LK + Sbjct: 61 GRNPSTGATIEIAASKKVAFTPAKQLKDAVNG 92 >gi|298207122|ref|YP_003715301.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559] gi|83849756|gb|EAP87624.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559] Length = 97 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 50/97 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+ G+ + + V T E+ S GE + + F +F +K++ + G Sbjct: 1 MTKADIVAKIADRIGMEKNEVQATVETFMEEVKTSLEGGENVYLRGFGSFIIKERAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN+ N +KI + FK + + + + +++ +K Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFMEGVKENVSVKK 97 >gi|296140540|ref|YP_003647783.1| histone family protein DNA-binding protein [Tsukamurella paurometabola DSM 20162] gi|296028674|gb|ADG79444.1| histone family protein DNA-binding protein [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++++ G R+ + V + + I + G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIEELTEKLGTDRRTAGAAVEAIVDTIVRAVHAGDSVTITGFGVFEQRKRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAAK 94 >gi|228473931|ref|ZP_04058672.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] gi|228274445|gb|EEK13286.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624] Length = 106 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + + V I DS +G+ + + F +F VK + + G Sbjct: 1 MTKAEIVAKISEKLGIEKTEVQNVVEHFMEGIKDSLEKGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I + FK + + + + ++ Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVFVQSVKTKVK 94 >gi|254498715|ref|ZP_05111431.1| integration host factor (IHF) alpha subunit [Legionella drancourtii LLAP12] gi|254352043|gb|EET10862.1| integration host factor (IHF) alpha subunit [Legionella drancourtii LLAP12] Length = 97 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 49/93 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 ++++ + +++ E LS+ S V F + + G +K+S F F ++ K R Sbjct: 2 NALSKAIMAETLCDELKLSKPASKEMVENFFEVLRHALEHGHHVKLSGFGNFTLRDKPQR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+ + RRVV FK+ LK +I + Sbjct: 62 PGRNPKTGEEIPVVARRVVTFKSGLKLKTKIEE 94 >gi|165932789|ref|YP_001649578.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa] gi|165907876|gb|ABY72172.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa] Length = 139 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + + + L++ ++ + + + + + + I I+ F + Sbjct: 39 KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 98 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + +R GRN +T ++KID F+A +K+ Sbjct: 99 FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 137 >gi|332878124|ref|ZP_08445853.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683862|gb|EGJ56730.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 96 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + GL + + V +E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKAEIVSKISDKSGLDKNEVQLIVENFMDEVINSLKDGQNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N +KI + FK + + + D+++ Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVDTVKDNVK 94 >gi|271969217|ref|YP_003343413.1| histone-like DNA-binding protein [Streptosporangium roseum DSM 43021] gi|270512392|gb|ACZ90670.1| histone-like DNA-binding protein [Streptosporangium roseum DSM 43021] Length = 99 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ G +K +T V + + I + G+ + I+ F F + K +R Sbjct: 1 MNKKELVDAIADRVG-DKKTATEAVNAVLDAIQKAVASGDKVSITGFGAFEMVHKPARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN T E+K+ F+ S K+ + + G+K K Sbjct: 60 RNPSTGAEIKVAESWGPKFRPGSDFKELVN--VEGKKAAK 97 >gi|240128445|ref|ZP_04741106.1| integration host factor subunit beta [Neisseria gonorrhoeae SK-93-1035] Length = 98 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 L + + + L KD V L + + S RG+ I+I F +F + + +R+GRN Sbjct: 4 LAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 +T + V++ + V FK L++R+ Sbjct: 64 KTGERVEVPEKHVPHFKPGKELRERV 89 >gi|307719533|ref|YP_003875065.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192] gi|306533258|gb|ADN02792.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192] Length = 102 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++ +T++ +V++IS+ LS+KD + + F+E+ + V G+ +++ F TF ++ + Sbjct: 5 TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64 Query: 62 R-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN +T + VK++ V VF+ LK + + Sbjct: 65 RDRARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99 >gi|315186666|gb|EFU20425.1| histone family protein DNA-binding protein [Spirochaeta thermophila DSM 6578] Length = 102 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++ +T++ +V++IS+ LS+KD + + F+E+ + V G+ +++ F TF ++ + Sbjct: 5 TEKLTKAQIVENISQHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKG 64 Query: 62 RV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN +T + VK++ V VF+ LK + + Sbjct: 65 RERARNPKTGEIVKVEDHGVAVFRPGKELKDSVWN 99 >gi|58979365|gb|AAW83347.1| DNA-binding protein HU [Campylobacter coli] gi|58979379|gb|AAW83354.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|58979373|gb|AAW83351.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|308235225|ref|ZP_07665962.1| DNA-binding protein HB1 [Gardnerella vaginalis ATCC 14018] Length = 93 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + +KI V A S+LKK + + Sbjct: 64 NPRTGETIKIPASYGVRISAGSLLKKAVTE 93 >gi|58979473|gb|AAW83401.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979475|gb|AAW83402.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979477|gb|AAW83403.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979479|gb|AAW83404.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979481|gb|AAW83405.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979483|gb|AAW83406.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979487|gb|AAW83408.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979489|gb|AAW83409.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979491|gb|AAW83410.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979493|gb|AAW83411.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979531|gb|AAW83430.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979533|gb|AAW83431.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979535|gb|AAW83432.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979537|gb|AAW83433.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979539|gb|AAW83434.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979541|gb|AAW83435.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979543|gb|AAW83436.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979545|gb|AAW83437.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979547|gb|AAW83438.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979549|gb|AAW83439.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979551|gb|AAW83440.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979555|gb|AAW83442.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979557|gb|AAW83443.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979559|gb|AAW83444.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979561|gb|AAW83445.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979563|gb|AAW83446.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979565|gb|AAW83447.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979567|gb|AAW83448.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979569|gb|AAW83449.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979575|gb|AAW83452.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979581|gb|AAW83455.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979589|gb|AAW83459.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979593|gb|AAW83461.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979601|gb|AAW83465.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979607|gb|AAW83468.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979609|gb|AAW83469.1| DNA-binding protein HU [Campylobacter upsaliensis] gi|58979611|gb|AAW83470.1| DNA-binding protein HU [Campylobacter upsaliensis] Length = 98 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|325266084|ref|ZP_08132770.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394] gi|324982722|gb|EGC18348.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394] Length = 101 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++KE GL++ D+ + V + + + + I + F TF V ++ R G Sbjct: 1 MNKSELIDAVAKESGLTKADAAKAVDAFTSVVKTALKADDTITLVGFGTFKVAERAERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + + I RV F LK + Sbjct: 61 LNPKTREAITIPAARVPKFTPGKGLKDAL 89 >gi|224015517|ref|XP_002297410.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220967911|gb|EED86280.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 85 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 44/85 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++ V +++++ G+++ +S ++ + N I G+ I + F TF + + +R GRN Sbjct: 1 KAEFVSAVAEKTGMTKAESEVALSAVLNVIATEVAAGKRISLPGFGTFKLNYRAARKGRN 60 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK 91 +T E+ I F AS K+ Sbjct: 61 PKTGDEIDIKASYSPSFSASKTFKE 85 >gi|261415071|ref|YP_003248754.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371527|gb|ACX74272.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326666|gb|ADL25867.1| DNA-binding protein HU [Fibrobacter succinogenes subsp. succinogenes S85] Length = 124 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ IT+ L++ I+K G R D V + + + + G I+I F TF K + Sbjct: 1 MAN-ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRK 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R RN +T + V ID R V FK S+ +K +I Sbjct: 60 ARPARNPRTGETVLIDERLVPTFKFSNDIKDKIN 93 >gi|303258162|ref|ZP_07344170.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|302859181|gb|EFL82264.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] Length = 92 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++E G S+ D + L ++ + G+ I + F TF ++ +R G Sbjct: 1 MNKTELVAAVAEETGKSKADVKEILEALIAQVVKTVKAGDEIALIGFGTFKSAERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +E+KI F A + K + Sbjct: 61 RNPATGKEIKILASIQPKFVAGKMFKDALNG 91 >gi|226197835|ref|ZP_03793409.1| integration host factor, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|254295622|ref|ZP_04963080.1| integration host factor, beta subunit [Burkholderia pseudomallei 406e] gi|157805552|gb|EDO82722.1| integration host factor, beta subunit [Burkholderia pseudomallei 406e] gi|225930023|gb|EEH26036.1| integration host factor, beta subunit [Burkholderia pseudomallei Pakistan 9] Length = 90 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 KD+ V T+ + + D+ +G I+I F +F + ++ +RVGRN ++ ++V++ + V Sbjct: 3 KDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKHVPH 62 Query: 83 FKASSILKKRIMDDMRGRKCNKDDVTS 109 FK L++R+ D G D+ Sbjct: 63 FKPGKELRERV-DGRAGEPLKNDEPED 88 >gi|57504971|ref|ZP_00370923.1| DNA-binding protein HU [Campylobacter coli RM2228] gi|305432029|ref|ZP_07401196.1| DNA-binding protein HU [Campylobacter coli JV20] gi|57019243|gb|EAL55949.1| DNA-binding protein HU [Campylobacter coli RM2228] gi|58979339|gb|AAW83334.1| DNA-binding protein HU [Campylobacter coli] gi|58979349|gb|AAW83339.1| DNA-binding protein HU [Campylobacter coli] gi|58979351|gb|AAW83340.1| DNA-binding protein HU [Campylobacter coli] gi|58979353|gb|AAW83341.1| DNA-binding protein HU [Campylobacter coli] gi|58979355|gb|AAW83342.1| DNA-binding protein HU [Campylobacter coli] gi|58979357|gb|AAW83343.1| DNA-binding protein HU [Campylobacter coli] gi|58979363|gb|AAW83346.1| DNA-binding protein HU [Campylobacter coli] gi|58979377|gb|AAW83353.1| DNA-binding protein HU [Campylobacter coli] gi|58979393|gb|AAW83361.1| DNA-binding protein HU [Campylobacter coli] gi|58979395|gb|AAW83362.1| DNA-binding protein HU [Campylobacter coli] gi|58979409|gb|AAW83369.1| DNA-binding protein HU [Campylobacter coli] gi|58979413|gb|AAW83371.1| DNA-binding protein HU [Campylobacter coli] gi|58979463|gb|AAW83396.1| DNA-binding protein HU [Campylobacter coli] gi|58979465|gb|AAW83397.1| DNA-binding protein HU [Campylobacter coli] gi|58979467|gb|AAW83398.1| DNA-binding protein HU [Campylobacter coli] gi|58979571|gb|AAW83450.1| DNA-binding protein HU [Campylobacter coli] gi|58979573|gb|AAW83451.1| DNA-binding protein HU [Campylobacter coli] gi|304445113|gb|EFM37759.1| DNA-binding protein HU [Campylobacter coli JV20] Length = 96 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|319952649|ref|YP_004163916.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] gi|319421309|gb|ADV48418.1| histone family protein DNA-binding protein [Cellulophaga algicola DSM 14237] Length = 96 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V + E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVTRISEKLGIEKGDVQATVESFMEEVKYSLENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPSFKPAKVFVESVKSNVEVK 96 >gi|146299294|ref|YP_001193885.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] gi|146153712|gb|ABQ04566.1| histone family protein DNA-binding protein [Flavobacterium johnsoniae UW101] Length = 96 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ GL + D V T E+ S G+ + + F +F VK + + G Sbjct: 1 MTKADIVAKISEKLGLEKGDVQATVETFMEEVKTSLETGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNEAK 96 >gi|329889322|ref|ZP_08267665.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] gi|328844623|gb|EGF94187.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] Length = 91 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +++ G+SR + + +++ S V+G +++ F +F + + V Sbjct: 1 MTKTELIGRMAEAAGISRDQAKLALEAFTDQVTGSLVQGRDVRLVGFGSFVAVDRKAGVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+ R F+ LK + Sbjct: 61 RNPQTGEEIARPASRTARFRPGEGLKSALNG 91 >gi|303257169|ref|ZP_07343183.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|331000812|ref|ZP_08324458.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] gi|302860660|gb|EFL83737.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|329570340|gb|EGG52073.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT 11859] Length = 105 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 46/100 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++++++++ E GL++ + + + + I + G + F F+ Q+ +R G Sbjct: 1 MNKTEMIEAVASETGLAKTEVAKVLNAYTDTIVKTVAEGGEYTVIGFGKFYASQRQARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN T E+KI V F A K + + + + Sbjct: 61 RNPSTGVEIKIPAAMVPKFTAGKAFKDAVNAPKKPARKGR 100 >gi|319951158|ref|ZP_08025003.1| histone family protein DNA-binding protein [Dietzia cinnamea P4] gi|319435174|gb|EFV90449.1| histone family protein DNA-binding protein [Dietzia cinnamea P4] Length = 126 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++ G + +T + + I + GE+I I F F K + +RV Sbjct: 1 MNKADLIAELADRMGGDHQLATEALENTLDIIVRTVASGESITIMGFGIFEKKARAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + + + P VF+ K I Sbjct: 61 RNPHTGESIPVPPTYSPVFRPGQYFKSVIQG 91 >gi|110004904|emb|CAK99236.1| probable dna-binding protein hu2 [Spiroplasma citri] Length = 94 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +++ +L I+++F LS+ + +F+ I + V G+ + I+ F F V ++ +R Sbjct: 1 MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T + +KI + FKA LK + ++ Sbjct: 61 DGRNPSTGETIKIPASKSAKFKAGKQLKTDLNNN 94 >gi|295098884|emb|CBK87973.1| Bacterial nucleoid DNA-binding protein [Eubacterium cylindroides T2-87] Length = 96 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K + R L + + +S+KD++ + +FNE+ +S + IS F F + + Sbjct: 1 MAKFVNRESLAQVLCDNLNISKKDASYAIELIFNEMSESLASDGYVDISGFGKFEIFFRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+G N T + + I ++ F+ S LK + + Sbjct: 61 ERMGINPVTKERIMIPATKLPKFRPSQTLKNKCNN 95 >gi|326804607|ref|YP_004327478.1| DNA binding protein [Salmonella phage Vi01] gi|301795257|emb|CBW37975.1| DNA binding protein [Salmonella phage Vi01] Length = 92 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+D + I++ G+++ ++ + V + N + + G++++ F F VK + +R G Sbjct: 1 MNRTDFIAHIAQTQGMTKGEAEKIVASFINGVKTAVAAGQSVQFVGFGAFEVKHQEARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN Q ++I+ + VV FK LK Sbjct: 61 RNPLNGQAIQIEAKNVVKFKVGEGLKAAANG 91 >gi|150025716|ref|YP_001296542.1| histone-like DNA-binding protein HU-alpha [Flavobacterium psychrophilum JIP02/86] gi|149772257|emb|CAL43733.1| Histone-like bacterial DNA-binding protein HU-alpha [Flavobacterium psychrophilum JIP02/86] Length = 98 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 48/95 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ GL + D V T E+ +S G+ + + F +F VK + + G Sbjct: 1 MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RN+ N +KI + FK + + + + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNEA 95 >gi|120437894|ref|YP_863580.1| histone-like DNA-binding protein [Gramella forsetii KT0803] gi|117580044|emb|CAL68513.1| histone-like bacterial DNA-binding protein [Gramella forsetii KT0803] Length = 96 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 51/96 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS++ G+ + D + + +E+ S G+ + + F +F VK + + G Sbjct: 1 MTKADIVANISEKLGMEKGDVQATIESFMDEVKTSLESGDNVYLRGFGSFVVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + I + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIFVEGVKSNVEVK 96 >gi|113969892|ref|YP_733685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] gi|113884576|gb|ABI38628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4] Length = 91 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I FKA++ LK+ I + Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKQAINE 91 >gi|328953615|ref|YP_004370949.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328453939|gb|AEB09768.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 98 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 56/96 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV+ + ++ LS+ ++ + V +F I + E + IS F + VK K R G Sbjct: 3 LTKASLVQVLFEKEILSKAEAAKVVDAVFRIIKQTLAEKEDVLISGFGKWLVKTKKERRG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN QT Q++ ID RRVV F+AS +L++ I + R Sbjct: 63 RNPQTGQDLTIDARRVVTFRASGVLRRLINQEPSSR 98 >gi|330996516|ref|ZP_08320398.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT 11841] gi|329573072|gb|EGG54691.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT 11841] Length = 107 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 42/70 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I++ GL++ D+ + + + I ++ +G+ I + F TF V ++ +R G Sbjct: 18 MNKTELINAIAENAGLNKTDAKKALDATISAISEALKKGDKIALVGFGTFSVSERPARTG 77 Query: 65 RNLQTNQEVK 74 N +T +++ Sbjct: 78 INPRTKEQIT 87 >gi|228911465|ref|ZP_04075263.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] gi|228848211|gb|EEM93067.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200] Length = 84 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 8/90 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K + + L++ ++ V + I + E +++ SF TF V+++ +R G Sbjct: 1 MNKSELIKQVIIQSELTKPQASLVVDAVLESIQHALQNREHVQLLSFGTFEVRERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + + I LK+ + Sbjct: 61 RNPHTGEALTIPA--------GKSLKEAVK 82 >gi|320352188|ref|YP_004193527.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320120690|gb|ADW16236.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 95 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + +LV +S++ G ++D + V + EI + ++I F +F V+ + R Sbjct: 1 MLKRELVNQVSEQLGDYYKQDIAQAVEIILEEISQALAEERRVEIRGFGSFSVRTRKPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +N +T + + I R+ + F S LK+ ++D++ Sbjct: 61 TKNPKTGKMMNIPARKTLHFTMSKSLKEVLIDEVE 95 >gi|56551140|ref|YP_161979.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761496|ref|ZP_04759584.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753209|ref|YP_003226102.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542714|gb|AAV88868.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374403|gb|EER63900.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552572|gb|ACV75518.1| histone family protein DNA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 91 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +DLV I+ GL++ D+ + V +F+ I D+AV GE I ++ F F VK +R G Sbjct: 1 MNSNDLVDRIASGQGLTKTDAKKLVDAVFSTIVDAAVAGEEIALNGFGKFKVKHSAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T QE++I + F ++ +K R+ Sbjct: 61 HNPATLQEIEIPASNRLTFTSAKAVKDRLN 90 >gi|311114526|ref|YP_003985747.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019] gi|310946020|gb|ADP38724.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019] Length = 105 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ R GR Sbjct: 16 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGR 75 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + +KI V A S+LKK + + Sbjct: 76 NPRTGETIKIPASYGVRISAGSLLKKAVTE 105 >gi|78355564|ref|YP_387013.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217969|gb|ABB37318.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 97 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 52/95 (54%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++D+V +I ++ +R + V +L + + + A+ IS F F K + Sbjct: 3 GKTLTKADIVDAIYEKTERNRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QT++ + + PR+VVVF+ S + + + Sbjct: 63 RKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE 97 >gi|291613626|ref|YP_003523783.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291583738|gb|ADE11396.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 98 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TRS+L++ ++ L+ D V + ++I ++I F TF + R Sbjct: 1 MTRSELIQQLASRHPELTSNDIEMSVRLILDKISSVLENKARVEIRGFGTFATLHRPPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N +T + VK+ + V F+A L+ R+ Sbjct: 61 GHNPKTGKVVKVPAKYVPHFRAGKELRVRVN 91 >gi|303326346|ref|ZP_07356789.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] gi|302864262|gb|EFL87193.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3] Length = 122 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 52/94 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT+T++D+V++I +E +R D V L + + + A+ IS F F K Sbjct: 28 MKKTLTKADIVEAIYEETDKNRVDVKNVVEQLLEIMKTAIKKDRALLISGFGKFECYDKA 87 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR GRN QT++ + + PR+V+VF+ S + + Sbjct: 88 SRKGRNPQTDETITLPPRKVMVFRLSRKFRSELN 121 >gi|167042006|gb|ABZ06742.1| putative bacterial DNA-binding protein [uncultured marine microorganism HF4000_141F21] Length = 91 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV IS L++ D+ R + I + E +KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKNDEQVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKEMFNK 91 >gi|315499784|ref|YP_004088587.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315417796|gb|ADU14436.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 92 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+ + GL+++ + + V + + D+ +GE +++ F TF ++ + R Sbjct: 3 TKAELVAAIADQAGLTKEQAKKAVDAFTDSVVDALKKGEEVRLVGFGTFLAVKREAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + V F+ LK + Sbjct: 63 NPRTGETVSRPASVTARFRVGEGLKNALNG 92 >gi|116515125|ref|YP_802754.1| HimD [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285479|sp|Q057N8|IHFB_BUCCC RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|116256979|gb|ABJ90661.1| integration host factor beta-subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 97 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L + I+++ + K V + + S +G I+I F +F + + +R+ Sbjct: 1 MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T ++V + + V FK L+ RI + Sbjct: 61 GRNPKTGEKVYLKEKYVPHFKPGKQLRDRINN 92 >gi|332520146|ref|ZP_08396610.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] gi|332044705|gb|EGI80899.1| histone family protein DNA-binding protein [Lacinutrix algicola 5H-3-7-4] Length = 96 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV IS++ G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADLVAKISEKLGIEKGDVQATVETFMEEVKTSLEAGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNVDVK 96 >gi|218777981|ref|YP_002429299.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218759365|gb|ACL01831.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 95 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D+V+ I G ++K+S V L I DS G+ + IS F F +KQK R Sbjct: 2 ALTKCDIVEKIYD-MGFTKKESVDVVEQLIEIIKDSLQEGDDVLISGFGKFCIKQKDQRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN T +++ + R+VV FK S L+ I D Sbjct: 61 GRNPATGKDLMLRERKVVTFKCSGKLRDLINDSQE 95 >gi|94264269|ref|ZP_01288063.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94266795|ref|ZP_01290460.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|94268979|ref|ZP_01291342.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93451393|gb|EAT02249.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93452538|gb|EAT03124.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93455314|gb|EAT05521.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 97 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Query: 1 MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M++ +TR DL K+I+++ G S++ + V +F ++ D+ + E IK+ F TF+V+ K Sbjct: 1 MNRANLTRKDLAKAINEQMGFSQRSAADLVDVVFEQLKDTLMAEEPIKLVQFGTFNVRHK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T ++I R ++ F+ S I+++RI Sbjct: 61 SPRQGRNPRTGDPMEITKRSMISFRPSKIVRERIN 95 >gi|298245978|ref|ZP_06969784.1| histone family protein DNA-binding protein [Ktedonobacter racemifer DSM 44963] gi|297553459|gb|EFH87324.1| histone family protein DNA-binding protein [Ktedonobacter racemifer DSM 44963] Length = 142 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++TI R +L + I+K+ LS+K ++ + + I ++ G+ +++ F +F V+ Sbjct: 48 AQTIGRQELSRRIAKQAKLSQKQASEVLEATLDSIREALQNGDEVRLVGFGSFKVRTSAE 107 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R G N + +E+ + + V F L + + Sbjct: 108 RKGVNPRDGKEIVVPAKERVRFSPGKELSEAVEK 141 >gi|295136313|ref|YP_003586989.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294984328|gb|ADF54793.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 96 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 50/96 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS++ G+ + D + T E+ S G+ + + F +F VK + + G Sbjct: 1 MTKADIVANISEKLGMEKGDVQATIETFMEEVKSSLESGDNVYLRGFGSFVVKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + I + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKIFVEGVKSNVDVK 96 >gi|126662500|ref|ZP_01733499.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] gi|126625879|gb|EAZ96568.1| DNA-binding protein HU [Flavobacteria bacterium BAL38] Length = 97 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ GL + D V T E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N +KI + FK + + + + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVESVKEKTE 94 >gi|148550652|ref|YP_001260091.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148503071|gb|ABQ71324.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 134 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 2 SKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + RS+LV + + LS ++ + V F + D G +++ F F + Sbjct: 14 APAMVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVELRGFGAFLTRLHE 73 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN ++ V + +R V FK +++R+ Sbjct: 74 ARTGRNPRSGLAVPVPAKRSVHFKPGKAMRERL 106 >gi|117925353|ref|YP_865970.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609109|gb|ABK44564.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 91 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 52/89 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +++++ L ++ + V +FNE+ + +GE +++ F F + + R Sbjct: 1 MTKSELILAVAEQNTLHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T ++V ++ + V FK +++R+ Sbjct: 61 RNPKTGKKVNVESKTAVHFKPGLDMRRRV 89 >gi|317154134|ref|YP_004122182.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316944385|gb|ADU63436.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 92 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 5 ITRSDLVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +S+L+ ++ + G S+ + V + I + + + + I+ F +F R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +GRN + V+I + + FK LK+ + Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >gi|163753443|ref|ZP_02160567.1| DNA-binding protein HU [Kordia algicida OT-1] gi|161327175|gb|EDP98500.1| DNA-binding protein HU [Kordia algicida OT-1] Length = 96 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 50/96 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V T E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGMEKGDVQATVETFMEEVKNSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVEVK 96 >gi|331001163|ref|ZP_08324791.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] gi|329569251|gb|EGG51040.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] Length = 92 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ G + D + L +I + G+ + + F TF ++ +RVG Sbjct: 1 MNKTELVATVAEVSGKPKADVKEVLEALLGQIIKTVKSGDEVTLVGFGTFKSAKREARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+KI F A + K + Sbjct: 61 RNPATGAELKIPASIQPKFVAGKLFKDALN 90 >gi|283783178|ref|YP_003373932.1| DNA-binding protein HU [Gardnerella vaginalis 409-05] gi|283441069|gb|ADB13535.1| DNA-binding protein HU [Gardnerella vaginalis 409-05] Length = 93 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + +KI V A S+LKK + Sbjct: 64 NPRTGETIKIPASYGVRISAGSLLKKAV 91 >gi|320534610|ref|ZP_08035057.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str. F0337] gi|325068381|ref|ZP_08127054.1| histone family protein DNA-binding protein [Actinomyces oris K20] gi|326773734|ref|ZP_08233017.1| DNA-binding protein HU [Actinomyces viscosus C505] gi|329947427|ref|ZP_08294631.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str. F0386] gi|320133176|gb|EFW25677.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str. F0337] gi|326636964|gb|EGE37867.1| DNA-binding protein HU [Actinomyces viscosus C505] gi|328525177|gb|EGF52228.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str. F0386] Length = 93 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++L+ +I+++ GL++ D+ F+ + + ++ +GEA+KI+ ++ +R Sbjct: 2 SVNRTELIAAIAEKAGLTKTDADAFLGAFQDVLVENVAKGEAVKITGLMGIERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E++I V S LKK + + Sbjct: 62 GRNPRTGEEIQIPAGYGVKVTVGSSLKKAVAE 93 >gi|257454892|ref|ZP_05620143.1| integration host factor, beta subunit [Enhydrobacter aerosaccus SK60] gi|257447825|gb|EEV22817.1| integration host factor, beta subunit [Enhydrobacter aerosaccus SK60] Length = 98 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M K + +SDL+ +S E + K + + + D+ + +++ F +F + + Sbjct: 1 MEKVLNKSDLITRLSSECENIPEKTIEEATKQIIDLMVDTLSQNGRVEVRGFGSFSLHHR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RV RN +T ++V + + FK L++ + Sbjct: 61 EPRVARNPKTGEKVTVKATAIPHFKPGKALREAVN 95 >gi|16126570|ref|NP_421134.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|221235352|ref|YP_002517789.1| DNA-binding protein HU [Caulobacter crescentus NA1000] gi|13423856|gb|AAK24302.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|220964525|gb|ACL95881.1| DNA-binding protein HU [Caulobacter crescentus NA1000] Length = 92 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + SDLV + ++ + L++ + + +F I D+AV+GE + I F F V+ K +R Sbjct: 1 MNVSDLVDAAVAADEKLTKTQAKAIIDGVFKSISDAAVKGEEVSIPGFGKFKVQAKPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + V F + LK + Sbjct: 61 GRNPATGATIEIAASKKVGFTPAKQLKDAVNG 92 >gi|325285938|ref|YP_004261728.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] gi|324321392|gb|ADY28857.1| histone family protein DNA-binding protein [Cellulophaga lytica DSM 7489] Length = 96 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS + G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVSKISDKLGIEKGDVQATVETFMEEVKTSLENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + +++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVQVK 96 >gi|254456178|ref|ZP_05069607.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter sp. HTCC7211] gi|207083180|gb|EDZ60606.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter sp. HTCC7211] Length = 91 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +S +S+ D+ R T+ N I D+ +++KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLIAQLSGSLNMSKADAERTFDTITNTILDALKGDDSVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKE 87 >gi|160883569|ref|ZP_02064572.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483] gi|156110982|gb|EDO12727.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483] Length = 88 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + LS ++T V + I ++ +GE++ + F +F ++++ +R G Sbjct: 1 MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVIQERKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S +K Sbjct: 61 HNPATGGSMVIPSKRQVKFRPGSKMK 86 >gi|71083518|ref|YP_266237.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1062] gi|91762063|ref|ZP_01264028.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1002] gi|71062631|gb|AAZ21634.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1062] gi|91717865|gb|EAS84515.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter ubique HTCC1002] Length = 91 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 49/87 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +S LS+ D+ R T+ N I D+ + +KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87 >gi|3334159|sp|P73418|DBH_SYNY3 RecName: Full=DNA-binding protein HU Length = 100 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Query: 5 ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + + +LV +++ + +++K+ ++ + I + GE + + F +F ++ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + R GRN +T ++ I +V F A + K ++ + + Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKVAPEKK 100 >gi|167042078|gb|ABZ06813.1| putative bacterial DNA-binding protein [uncultured marine microorganism HF4000_141I21] Length = 91 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV IS L++ D+ R + I + E +KI+ F T+ V ++ +RVG Sbjct: 1 MNKKQLVAKISSSMNLNKADAERTFDGITEIILNCLKSDEQVKIAGFGTYKVAKRKARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T ++++I + V F + LK+ Sbjct: 61 RNPRTGEQIQIAASQKVKFLPAKALKEMFNK 91 >gi|58979335|gb|AAW83332.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLTKGDSVSFIGFGTFSTAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|262277180|ref|ZP_06054973.1| integration host factor subunit alpha (IHF-alpha) [alpha proteobacterium HIMB114] gi|262224283|gb|EEY74742.1| integration host factor subunit alpha (IHF-alpha) [alpha proteobacterium HIMB114] Length = 95 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 55/95 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +TR DL KE G+S+ + +FV +F I + G +K+S F +F VK K Sbjct: 1 MSNNVTRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R+GRN +T +E +I RRVV FK S L K+I Sbjct: 61 ARIGRNPKTKEEKEISSRRVVTFKPSKFLSKKINK 95 >gi|161870175|ref|YP_001599345.1| integration host factor subunit beta [Neisseria meningitidis 053442] gi|161595728|gb|ABX73388.1| integration host factor beta-subunit [Neisseria meningitidis 053442] Length = 95 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 10 LVKSISKE--FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + + + + L KD V L + + S RG+ I+I F +F + + +R+GRN Sbjct: 1 MAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNP 60 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +T + V++ + V FK L++R+ ++ Sbjct: 61 KTGERVEVPEKHVPHFKPGKELRERVDLALK 91 >gi|283852456|ref|ZP_06369725.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|303249426|ref|ZP_07335647.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] gi|283572194|gb|EFC20185.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|302489168|gb|EFL49139.1| histone family protein DNA-binding protein [Desulfovibrio fructosovorans JJ] Length = 100 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 50/95 (52%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++D+V I ++ +R + V L + S + ++ +S F F K + Sbjct: 3 GKTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKKDHSLLVSGFGKFESYDKKA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QTN+ + + PR+VVVF+ S + + D Sbjct: 63 RKGRNPQTNESIMLPPRKVVVFRLSRKFRAELNPD 97 >gi|213963105|ref|ZP_03391363.1| DNA-binding protein HU [Capnocytophaga sputigena Capno] gi|213954189|gb|EEB65513.1| DNA-binding protein HU [Capnocytophaga sputigena Capno] Length = 116 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 45/87 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + GL R D V +E+ +S G+ + + F +F +K + + G Sbjct: 20 MTKAEIVSKISDKLGLDRNDVQLTVENFMDEVINSLESGQNVYLRGFGSFIIKTRAEKTG 79 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N +KI + FK + + + Sbjct: 80 RNISKNTTIKIPAHNIPAFKPAKVFVE 106 >gi|86143784|ref|ZP_01062160.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217] gi|85829827|gb|EAQ48289.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217] Length = 98 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 49/93 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V T E+ +S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGIEKNDVQATVETFMTEVKNSLEGGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN+ N +KI + FK + + + + ++ Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNV 93 >gi|260175099|ref|ZP_05761511.1| putative histone-like DNA-binding protein [Bacteroides sp. D2] gi|315923329|ref|ZP_07919569.1| HU family DNA-binding protein [Bacteroides sp. D2] gi|313697204|gb|EFS34039.1| HU family DNA-binding protein [Bacteroides sp. D2] Length = 88 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 47/86 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K ++ + LS +++ + + + I ++ +GE I + F +F ++++ R G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S ++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >gi|24373428|ref|NP_717471.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] gi|24347706|gb|AAN54915.1|AE015629_9 DNA-binding protein, HU family [Shewanella oneidensis MR-1] Length = 91 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPLFGTFELRYHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I FKA++ LK+ I + Sbjct: 61 RNPQTGEAIEIAGFNQPSFKAATALKQAINE 91 >gi|319758735|gb|ADV70677.1| nucleoid DNA-binding protein [Streptococcus suis JS14] Length = 89 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ +++ L++KDS V +F + D GE +++ F F V+++ +R GR Sbjct: 3 NKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGR 62 Query: 66 NLQTNQEVK 74 N QT E+K Sbjct: 63 NPQTGAEIK 71 >gi|307825166|ref|ZP_07655387.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] gi|307733914|gb|EFO04770.1| histone family protein DNA-binding protein [Methylobacter tundripaludum SV96] Length = 103 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S L+ ++K+ L RK+ V + ++ + + + I+I F +F + Sbjct: 1 MTKSKLIDLLAKKWPHLERKEVELAVGCMIEQMSKALMANDRIEIRGFGSFSLHYHPPFT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T E+K+ R FK L++R+ Sbjct: 61 GRNPRTGAELKLQARYSPYFKPGRELRQRV 90 >gi|51473371|ref|YP_067128.1| DNA-binding protein HU [Rickettsia typhi str. Wilmington] gi|81692317|sp|Q68XJ6|DBH_RICTY RecName: Full=DNA-binding protein HU gi|51459683|gb|AAU03646.1| DNA-binding protein HU [Rickettsia typhi str. Wilmington] Length = 99 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 44/97 (45%), Gaps = 9/97 (9%) Query: 5 ITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 + +++ + +++ L++ D+ + + + + + + + ++ F +F Sbjct: 1 MNKTEFIAYMTEHCHNNKHAAHKTLTKADAEKALNLVIDSVISAIKSKHNVNLTGFGSFE 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + + +R GRN +T ++ ID F+A LK+ Sbjct: 61 IHHRKAREGRNPKTGAKMTIDAYNQPTFRAGRKLKEA 97 >gi|326336370|ref|ZP_08202541.1| integration host factor subunit alpha [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691544|gb|EGD33512.1| integration host factor subunit alpha [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 105 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + + V EI S +G+ + + F +F VK + + G Sbjct: 1 MTKAEIVAKISEKLGIEKTEVQNTVEHFMEEIKASLEKGDNVYLRGFGSFIVKARAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + + Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKVF 85 >gi|313159521|gb|EFR58884.1| DNA-binding protein HU-beta [Alistipes sp. HGB5] Length = 86 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 50/85 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + +S+ D+ + V + S GE + ++ TF V+QK +RVG Sbjct: 1 MNKAQLVEAIALDANISKIDARKAVDAIIRVTVQSLREGERLTLTGLGTFSVQQKAARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T+ VKI PR+ V F+ + L Sbjct: 61 RNPRTSAAVKIPPRKAVKFRPTIEL 85 >gi|329120185|ref|ZP_08248854.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC BAA-1200] gi|327463337|gb|EGF09657.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC BAA-1200] Length = 97 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 43/92 (46%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI +++LVK + +S + R + L + + G + I+ F TF + K R Sbjct: 5 QTIHKTELVKQAAALSDISTAAAARLIDNLLDTVKTHLRNGFKVSITDFGTFEAQSKPER 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + + I V FKA LK + Sbjct: 65 SGRNPQTGEAITIAAHMAVKFKAGKALKDAVN 96 >gi|297569511|ref|YP_003690855.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296925426|gb|ADH86236.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 92 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + DL+ ++++E G +KD + + + I + ++I F +F V+++ +R Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQALDIMLENILQALEDNRRVEIRGFGSFSVRERKART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T + + I PR+ V F S LK ++D Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGLID 92 >gi|307295340|ref|ZP_07575179.1| histone family protein DNA-binding protein [Sphingobium chlorophenolicum L-1] gi|306878843|gb|EFN10062.1| histone family protein DNA-binding protein [Sphingobium chlorophenolicum L-1] Length = 91 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++L ++++ + GL++ D+ ++V +F I +A +G+ + ++ F F VK + +R G Sbjct: 1 MNNTELAEALAADHGLTKADARKYVDGVFAAIAGAAAKGDEVSLNGFGKFKVKDQPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T ++I + + F + +K ++ Sbjct: 61 RNPSTGAVIQIAASKKLTFTPAKAVKDQLNG 91 >gi|162148585|ref|YP_001603046.1| DNA binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161787162|emb|CAP56754.1| putative DNA binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 97 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ +S+ D+ + + L + +A G+ I + +F F V++ +R GRN Sbjct: 10 ADLVDHIATTTDISKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVREVAAREGRNP 69 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 70 ATGATIQIAASRKLAFTPAKALKDSLND 97 >gi|301061080|ref|ZP_07201877.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2] gi|300444874|gb|EFK08842.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2] Length = 95 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 56/94 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ L+ ++ ++ L +K +T V +LF I + V GE + IS F F VK K R Sbjct: 2 TITKNKLIDAVDEKTELPKKTATSAVESLFEIIKRTLVSGEDVLISGFGKFVVKDKKKRK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN +T + + +D RR+V FK S+ L+ ++ D Sbjct: 62 GRNPETGKGLILDARRIVSFKCSNKLRDKMNDSH 95 >gi|19918954|dbj|BAB88690.1| histone-like HU protein HBl [Bifidobacterium longum biovar Longum] Length = 93 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRPARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I V A S+LKK + + Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAVTE 93 >gi|301059179|ref|ZP_07200119.1| integration host factor subunit alpha [delta proteobacterium NaphS2] gi|300446727|gb|EFK10552.1| integration host factor subunit alpha [delta proteobacterium NaphS2] Length = 94 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 53/91 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ SI + GLS+ S L I ++ GE + IS F F VK+K SR Sbjct: 2 ALTKEKIIDSIYHQVGLSKSQSRAAAEGLLEIIKETLENGEDLLISGFGKFLVKEKASRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +++++ RRVVVFK S +L+ +I Sbjct: 62 GRNPQTTEDLQLRARRVVVFKTSGVLRDKIN 92 >gi|117920062|ref|YP_869254.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] gi|117612394|gb|ABK47848.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3] Length = 91 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTRPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I FKA++ LK+ I + Sbjct: 61 RNPQTGETMEIAGFNQPSFKAATALKQAINE 91 >gi|281425612|ref|ZP_06256525.1| DNA-binding protein HU [Prevotella oris F0302] gi|299140824|ref|ZP_07033962.1| DNA-binding protein HU [Prevotella oris C735] gi|281400199|gb|EFB31030.1| DNA-binding protein HU [Prevotella oris F0302] gi|298577790|gb|EFI49658.1| DNA-binding protein HU [Prevotella oris C735] Length = 97 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 50/96 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ D+ + V TL + DS GE + ++ F TF VK++ RV Sbjct: 1 MNNKEFIAELALRSGYTQADAQKLVNTLIEGMGDSFEAGENVSLTGFGTFEVKKRMERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 N T + + P+ V+ FK ++ +K+++ + G Sbjct: 61 VNPSTGMRMLVPPKLVLGFKPNASIKEKLKNGGDGN 96 >gi|305666098|ref|YP_003862385.1| DNA-binding protein HU [Maribacter sp. HTCC2170] gi|88707532|gb|EAQ99775.1| DNA-binding protein HU [Maribacter sp. HTCC2170] Length = 96 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + G+ + D V + E+ S G+ + + F +F +K + + G Sbjct: 1 MTKAEIVSKISDKLGIEKGDVQATVESFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + +++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVQVK 96 >gi|319763435|ref|YP_004127372.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|330824318|ref|YP_004387621.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|317117996|gb|ADV00485.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|329309690|gb|AEB84105.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 111 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R+ LV+ ++ + LS+ + + TL I + +G+ +++ F TF ++ +R G Sbjct: 12 MNRAQLVEILASKNDLSKTAANAVLETLTETIQTAVKKGDTVQLVGFGTFKSAKRAARTG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 +N T +KI V F + K + RK K Sbjct: 72 KNPATGAALKIPASTVPKFVPGAKFKAVVDPKAAKRKAGK 111 >gi|225010184|ref|ZP_03700656.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] gi|225005663|gb|EEG43613.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-3C] Length = 96 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 48/96 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVTKISEKLGIEKGDIQATVEAFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVNVK 96 >gi|23335497|ref|ZP_00120732.1| COG0776: Bacterial nucleoid DNA-binding protein [Bifidobacterium longum DJO10A] gi|23466342|ref|NP_696945.1| DNA-binding protein HU [Bifidobacterium longum NCC2705] gi|189440838|ref|YP_001955919.1| nucleoid DNA-binding protein [Bifidobacterium longum DJO10A] gi|213691575|ref|YP_002322161.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227546710|ref|ZP_03976759.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620686|ref|ZP_04663717.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454624|ref|YP_003661767.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|312132302|ref|YP_003999641.1| hima [Bifidobacterium longum subsp. longum BBMN68] gi|317481730|ref|ZP_07940762.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689691|ref|YP_004209425.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322691653|ref|YP_004221223.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|24212656|sp|P17615|DBH1_BIFLO RecName: Full=DNA-binding protein HB1 gi|23327099|gb|AAN25581.1| DNA-binding protein Hu [Bifidobacterium longum NCC2705] gi|189429273|gb|ACD99421.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum DJO10A] gi|213523036|gb|ACJ51783.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212672|gb|EEI80553.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516262|gb|EEQ56129.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516247|emb|CBK69863.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum subsp. longum F8] gi|296184055|gb|ADH00937.1| histone family protein DNA-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|311773444|gb|ADQ02932.1| HimA [Bifidobacterium longum subsp. longum BBMN68] gi|316916844|gb|EFV38234.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456509|dbj|BAJ67131.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320457663|dbj|BAJ68284.1| DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320461027|dbj|BAJ71647.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 93 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I V A S+LKK + + Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAVTE 93 >gi|171060236|ref|YP_001792585.1| histone family protein DNA-binding protein [Leptothrix cholodnii SP-6] gi|170777681|gb|ACB35820.1| histone family protein DNA-binding protein [Leptothrix cholodnii SP-6] Length = 131 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K+ LS+ ++ R + T+ + + + +G A+ + F +F + +R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T ++KI ++ F + K + Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAV 89 >gi|302339671|ref|YP_003804877.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301636856|gb|ADK82283.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 117 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T++++++ I ++ ++R D + LF E+ D+ + +++ F TF ++ + Sbjct: 12 GNKLTKAEIIERIYEKHEVNRSDIHDVIDALFEELKDALQQDRVVELRGFGTFEIRTRKG 71 Query: 62 R-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R RN +T + V ++ V VF+ LK +I +RG D Sbjct: 72 RDRARNPKTGEIVPVNTHGVAVFRPGKELK-QIAWPLRGENGGSGD 116 >gi|241764993|ref|ZP_04762990.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241365427|gb|EER60214.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 103 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV+ ++ + LS+ + + TL + I + +G +++ F TF ++ +R G Sbjct: 1 MNRAELVEILASKNDLSKAAANAVLETLIDTIQTAVKKGNPVQLVGFGTFKSAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N T +KI V F A + K + Sbjct: 61 KNPATGAALKIPASTVPKFVAGAKFKAVV 89 >gi|296533342|ref|ZP_06895945.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] gi|296266332|gb|EFH12354.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] Length = 98 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 49/94 (52%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 ++ ++R DLV + + L + + + + + D+ G ++++ F +F V ++ + Sbjct: 5 TRPLSRQDLVDAAAAATSLPKTQADAVLKAVLAAVGDALGAGREVRLAGFGSFAVSERAA 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN T + V+I + V FK + LK R+ + Sbjct: 65 RQGRNPATGEVVQIAASKSVKFKPAKDLKTRLGE 98 >gi|308271404|emb|CBX28012.1| DNA-binding protein HU-alpha [uncultured Desulfobacterium sp.] Length = 88 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 +T+++LV +++ G+S+ + + ++ + I + + + + + F TF ++ +R Sbjct: 1 MTKAELVDKAAEDAGISKTAAAATLNSIMDSIAKTLKKKDGKVTLVGFGTFTKVRRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN QT + +KI VV F+ L++ Sbjct: 61 GRNPQTGEPIKIKACTVVKFRPGKKLRE 88 >gi|223039759|ref|ZP_03610044.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter rectus RM3267] gi|222878951|gb|EEF14047.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter rectus RM3267] Length = 100 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +++++++ GLS+KDS + V I + V G+++ F TF + +R Sbjct: 1 MKKADFIQAVAEKAGLSKKDSLKVVDAALEVIESALVAGDSVSFIGFGTFGTADRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R T + + + + V FK LK+ + Sbjct: 61 RVPGTKKVIDVPASKAVKFKVGKKLKEAV 89 >gi|167621831|ref|YP_001676616.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167351572|gb|ABZ74302.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + SDL+ + ++ E L++ + + +F + +AV+GE I I F F V+ K +R Sbjct: 1 MNVSDLIDAAVAAEPKLTKAQAKAIIDGVFKSLTAAAVKGEEISIPGFGKFKVQAKPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + V F + LK + Sbjct: 61 GRNPATGGTIQIAASKKVAFTPAKQLKDAVNG 92 >gi|76798122|ref|ZP_00780376.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21] gi|76586530|gb|EAO63034.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21] Length = 85 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L+ +++ L++KDS V +F + D GE +++ F F V+++ +R GRN QT Sbjct: 1 LIAKVAEATELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQT 60 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 E++I +V FKA LK + Sbjct: 61 GAEIEIAASKVPAFKAGKALKDAVK 85 >gi|329890586|ref|ZP_08268929.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568] gi|328845887|gb|EGF95451.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568] Length = 92 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ +++K+ G+S+ D+ + +T + I S G ++IS+ F ++ R GR Sbjct: 3 TQAELIAAVAKDAGVSQADAGKVLTAIVENIHKSLKSGGDVRISNLGVFDTAERAEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + V F+ S LK + Sbjct: 63 NPATGATIKIPASKAVRFRVSKPLKDAVNG 92 >gi|121582539|ref|YP_974071.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|309783318|ref|ZP_07678028.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA] gi|330827371|ref|YP_004390609.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|120608597|gb|ABM44336.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|308917862|gb|EFP63549.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA] gi|329312679|gb|AEB87093.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 91 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DL+ +I+++ S+ +TRF+ +L + + +G A+K++ F TF +R G Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +KI F + K + D Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVKD 91 >gi|320528538|ref|ZP_08029695.1| DNA-binding protein HU [Solobacterium moorei F0204] gi|320131124|gb|EFW23697.1| DNA-binding protein HU [Solobacterium moorei F0204] Length = 96 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L +++++GL++K + V +F+EI + +G + ++ F F V +K +R Sbjct: 5 KVVTKKTLADDLAEKYGLTKKAAGEAVNYVFDEIATTIKKGGEVSLNGFGKFTVVKKKAR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N T +++KI + FKAS LK + Sbjct: 65 TGLNPATGEKIKIKATKAPKFKASKTLKDLVK 96 >gi|167645770|ref|YP_001683433.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167348200|gb|ABZ70935.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + SDLV + ++ + L++ + + +F + ++AV+GE + I F F V+ K +R Sbjct: 1 MNVSDLVDAAVAADDKLTKTQAKALIDGVFKSLTEAAVKGEEVSIPGFGKFKVQAKPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + V F + LK + Sbjct: 61 GRNPSTGAAIEIAASKKVAFTPAKQLKDAVNG 92 >gi|83858753|ref|ZP_00952275.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853576|gb|EAP91428.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii HTCC2633] Length = 88 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 50/87 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L K+I+ + G+++ ++ + + I +A ++++++ F TFH K + +R Sbjct: 1 MNKSELAKAIADKAGITKAQASDAIDAFADAIVGAAKSNDSVQLAGFGTFHAKHREAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T +++ + + F+ +S LK Sbjct: 61 RNPRTGEKMMSKAKTQLAFRPASALKD 87 >gi|299117325|emb|CBN75285.1| DNA-binding protein HU [Ectocarpus siliculosus] Length = 161 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 V++I++ L + + + + + G I + F TF + + R GRN +T Sbjct: 73 VEAIAERSNLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRTG 132 Query: 71 QEVKIDPRRVVVFKASSILKKRIMDDM 97 +E+KI F AS K + Sbjct: 133 EELKIKATTAPAFSASKAFKDMVKAAH 159 >gi|291457432|ref|ZP_06596822.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213] gi|291381267|gb|EFE88785.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213] Length = 93 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + + I V A S+LKK + + Sbjct: 64 NPRTGETINIPASYGVRISAGSLLKKAVTE 93 >gi|94266275|ref|ZP_01289980.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93453126|gb|EAT03597.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 93 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + DL+ ++++E G +KD + V + I ++ ++I F +F V+++ +R Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T + + I PR+ V F S LK ++ Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGLIK 92 >gi|47459316|ref|YP_016178.1| nucleoid DNA-binding protein HU [Mycoplasma mobile 163K] gi|47458646|gb|AAT27967.1| bacterial nucleoid DNA-binding protein HU [Mycoplasma mobile 163K] Length = 108 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + IT+ DL+ +I++ S+K+ V EI V + I +SSF F + ++ +R Sbjct: 16 QIITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAAR 75 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N +T++ ++I + V FK S LK ++ Sbjct: 76 SGINPKTSEIIQIKATKSVKFKVSKSLKDQVN 107 >gi|319942541|ref|ZP_08016851.1| integration host factor subunit beta [Sutterella wadsworthensis 3_1_45B] gi|319803944|gb|EFW00862.1| integration host factor subunit beta [Sutterella wadsworthensis 3_1_45B] Length = 102 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 1 MSKTITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M ++T+S+L+ + R +D + + + + V G I+I F +F +K + Sbjct: 1 MGNSMTKSELLAELYGRLPTFRERDCMDAAGVIIDTMSQTLVEGGRIEIRGFGSFGLKYR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RVGRN Q V + R V FKA L++R+ + Sbjct: 61 PERVGRNPQDGSAVAVRARYTVFFKAGKDLRQRVDASRDSK 101 >gi|302560391|ref|ZP_07312733.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000] gi|302478009|gb|EFL41102.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000] Length = 93 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89 >gi|188996798|ref|YP_001931049.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931865|gb|ACD66495.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 92 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 52/91 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S+L+ +++ G+++ + R V + + +GE + I F+VKQ+ +R G Sbjct: 1 MTKSELISKTAEKAGITKAAAERAVNAAIEAVVGALSKGERVAIPGLGVFNVKQRKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+ I R+VV F A+ LK+ + Sbjct: 61 RNPRTGKEITIPARKVVAFTAAKSLKEGLNK 91 >gi|57242219|ref|ZP_00370158.1| hup protein [Campylobacter upsaliensis RM3195] gi|57016899|gb|EAL53681.1| hup protein [Campylobacter upsaliensis RM3195] gi|58979437|gb|AAW83383.1| DNA-binding protein HU [Campylobacter upsaliensis] Length = 98 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 42/85 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ L++KD+ + + I + +G++I F TF ++ +R Sbjct: 1 MTKADFISQVAQNAELTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|37522993|ref|NP_926370.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] gi|35213996|dbj|BAC91365.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] Length = 96 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 50/95 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++K+ L++KD V F+ I ++ RG+ + + F +F +++ +R G Sbjct: 1 MNKGELVDAVAKKAKLAKKDVDAIVGAAFDVIVEAVSRGDKVTLVGFGSFEPRKRAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RN +T +++ I V F A ++ + + Sbjct: 61 RNPKTREKMTIAATTVPAFSAGKQFREAVSGSAQA 95 >gi|195940565|ref|ZP_03085947.1| transcriptional regulator HU subunit beta [Escherichia coli O157:H7 str. EC4024] Length = 74 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 39/73 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNLQTNQEVKIDP 77 RN QT +E+ I Sbjct: 61 RNPQTGKEITIAA 73 >gi|94266544|ref|ZP_01290230.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] gi|93452819|gb|EAT03345.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1] Length = 93 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + DL+ ++++E G +KD + V + I ++ ++I F +F V+++ +R Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEDNRRVEIRGFGSFSVRERKART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N +T + + I PR+ V F S LK ++ Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGLIK 92 >gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054] Length = 226 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++++++ G RK + V + + + + V G+ + ++ F TF ++ +R Sbjct: 1 MNKAQLVEAVAEQLG-GRKAAAEAVDAVLDTMVRAVVAGDRVSVTGFGTFEKVERSARFA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + VK+ V F+ K + + K +P GS Sbjct: 60 RNPQTGERVKVKKTAVPRFRPGQGFKDLVSGSKKLPKDGPSVKKAPKGS 108 >gi|86749688|ref|YP_486184.1| histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2] gi|86572716|gb|ABD07273.1| Histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2] Length = 103 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + + L I +GE I+I V+++ +R Sbjct: 14 TVTLKHLAAALAEEHELSKKQTEAILGDLVGRITKHLKKGERIRIVGLGILQVRKRAART 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + ++I + V F+A+ LK+ I Sbjct: 74 GRNPATGETIQIKASKKVAFRAAKELKEAI 103 >gi|331000500|ref|ZP_08324173.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] gi|329571488|gb|EGG53172.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] Length = 92 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV ++++ G + D + L +I + G+ + + F TF ++ +RVG Sbjct: 1 MNKTELVTAVAEVSGKPKADVKEVLEALMGQIIKTVKSGDEVALVGFGTFKSAKREARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+KI F A + K + Sbjct: 61 RNPATGAELKIPASIQPKFVAGKLFKDALN 90 >gi|227495757|ref|ZP_03926068.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434] gi|226834686|gb|EEH67069.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434] Length = 93 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++L+ +I+++ GL++ D+ F+ + ++ +GEA+KI+ ++ +R Sbjct: 2 SVNRTELIAAIAEKAGLTKTDADAFLGAFQEVLVENVAKGEAVKITGLMGVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E++I V S LKK + Sbjct: 62 GRNPRTGEEIQIPAGYGVKLTVGSALKKAVAK 93 >gi|313238132|emb|CBY13230.1| unnamed protein product [Oikopleura dioica] Length = 91 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++L+ +I G +++ + + + + I + + ++I F TF VK++ +R Sbjct: 1 MNKAELIDAIQAALGKDATKRAADEALEAVLSSIAKGVKKDKKVQIIGFGTFEVKKRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 GRN +T + +KI + V FKASS+LK Sbjct: 61 TGRNPKTGEAMKIAASKSVGFKASSVLK 88 >gi|186471029|ref|YP_001862347.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184197338|gb|ACC75301.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 124 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQKGS 61 + + +L+ +++ G S+ + + + + + RGE I++ F +F + Sbjct: 1 MNKQELIDAVAASTGESKASTGEALDAILEAVTSAVTRGETIQLIQLIGFGSFSTGARLE 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRNL T + I + V F A + + Sbjct: 61 RTGRNLSTGDTITIAAAKTVKFTAGKSFMEAVN 93 >gi|114569526|ref|YP_756206.1| histone family protein DNA-binding protein [Maricaulis maris MCS10] gi|114339988|gb|ABI65268.1| histone family protein DNA-binding protein [Maricaulis maris MCS10] Length = 88 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 47/87 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL K+++++ GLSR + V + I S ++++I+ F TF+ K + +R Sbjct: 1 MNKSDLAKAVAEKTGLSRAQAGEAVDSAIEAIVGSVKGNDSVQIAGFGTFYAKHREAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T + + R F+ ++ LK Sbjct: 61 RNPRTGETMMSKARTQAAFRPAAALKD 87 >gi|294629628|ref|ZP_06708188.1| DNA-binding protein HU [Streptomyces sp. e14] gi|302551775|ref|ZP_07304117.1| integration host factor, alpha subunit [Streptomyces viridochromogenes DSM 40736] gi|292832961|gb|EFF91310.1| DNA-binding protein HU [Streptomyces sp. e14] gi|302469393|gb|EFL32486.1| integration host factor, alpha subunit [Streptomyces viridochromogenes DSM 40736] Length = 93 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFADVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89 >gi|229182102|ref|ZP_04309394.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] gi|228601353|gb|EEK58882.1| DNA-binding protein HU 1 [Bacillus cereus 172560W] Length = 93 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 52/92 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + I +++L K ++++ L +KD T+ + I + GE ++I F TF V+++ +R Sbjct: 2 QKINKTELTKVVAEKTELIQKDPVAATQTVLDTITSALANGEKVQILGFGTFEVRERSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E++I + FKA LK+ + Sbjct: 62 TGRNPQTGEEMQIAASKASAFKAGKELKEAVK 93 >gi|224373120|ref|YP_002607492.1| non-specific DNA-binding protein [Nautilia profundicola AmH] gi|223589367|gb|ACM93103.1| non-specific DNA-binding protein [Nautilia profundicola AmH] Length = 91 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++++ GLS+KD + + ++ G+ + F +F V + RV Sbjct: 1 MKKSELIAAVAEKSGLSKKDVNAVIDATIEAMEEALKAGKKVSFIGFGSFEVVTRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R TN+EVKI + V FK LK+ + Sbjct: 61 RVPGTNKEVKIPETKSVKFKVGKKLKELLNK 91 >gi|189425274|ref|YP_001952451.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421533|gb|ACD95931.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 95 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 42/87 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV +++ GL++ + + + + + + G+ + + F TF + +R G Sbjct: 1 MKKSELVAKMAEGAGLTKAQAEKALASFIAGVTGALTAGDKVTLVGFGTFSAITRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + +KI + F LK Sbjct: 61 RNPQTGKAIKIAAKTSGKFSPGKSLKD 87 >gi|187736379|ref|YP_001878491.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|187426431|gb|ACD05710.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 89 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + ++ L++ I + G ++K + + + I + ++I F TF K + +R Sbjct: 1 MNKAQLIELIQSKLGADTTKKHAEEALAAVLESIKEGVKESGKVQIIGFGTFATKTREAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN +T + I + V FKASS LK Sbjct: 61 TGRNPKTGNTINIPASKTVAFKASSALKD 89 >gi|186683346|ref|YP_001866542.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] gi|186465798|gb|ACC81599.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] Length = 91 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++ + +++K + ++ + + ++ G+ + + F +F +++ R G Sbjct: 1 MNKGELVDAVAAKTNITKKQADEVISAFLSVVTEAVANGDKVTLVGFGSFERRERAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +TN+ + I RV F K+++ Sbjct: 61 RNPKTNEPMTIPATRVPGFSPGKQFKEKVA 90 >gi|320088600|emb|CBY98359.1| DNA-binding protein HU-alpha NS2; HU-2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 74 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 39/71 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+ + LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNLQTNQEVKI 75 RN QT +E+KI Sbjct: 61 RNPQTGKEIKI 71 >gi|167764650|ref|ZP_02436771.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC 43183] gi|167697319|gb|EDS13898.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC 43183] Length = 101 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I++E G+++K+S + + + + + + + + F TF VKQK +R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 N T ++I +RVV F+ S+ L ++ RGRK Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYL-NSLLKRKRGRK 96 >gi|317485299|ref|ZP_07944179.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316923425|gb|EFV44631.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 100 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 54/96 (56%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T++D+V++I ++ +R D V L + + + +A+ +S F F K Sbjct: 1 MNRALTKADIVEAIYEKTDRNRADVKNTVEILLGLMKQAIKKDDALLVSGFGKFEAYDKE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R GRN QT++ + + PR+VVVF+ S + + + Sbjct: 61 ARKGRNPQTDETITLPPRKVVVFRLSRKFRAELNGE 96 >gi|320106540|ref|YP_004182130.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] gi|319925061|gb|ADV82136.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] Length = 89 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++ I GL R + +F+ + + G+ I++ F F VK + + +G Sbjct: 1 MIKQDLIQRIVDRSGLPRTKAEAATDVIFDTMKKAMASGDRIELRGFGVFTVKPRKTGIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T EV I+P + V FK L Sbjct: 61 RNPRTGAEVSIEPGKAVRFKPGKDL 85 >gi|86131320|ref|ZP_01049919.1| DNA-binding protein HU [Dokdonia donghaensis MED134] gi|332292027|ref|YP_004430636.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|85818731|gb|EAQ39891.1| DNA-binding protein HU [Dokdonia donghaensis MED134] gi|332170113|gb|AEE19368.1| histone family protein DNA-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 96 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +S++ G+ + D + + E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKVSEKLGIEKNDVQATIESFMEEVKTSLEGGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN+ N +KI + FK + + + + ++ Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNV 93 >gi|86134967|ref|ZP_01053549.1| DNA-binding protein [Polaribacter sp. MED152] gi|85821830|gb|EAQ42977.1| DNA-binding protein [Polaribacter sp. MED152] Length = 96 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 47/96 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS + G+ + D V E+ D+ G+ + + F +F +K + + G Sbjct: 1 MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKDALENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + + + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKTFTEGVKNKVAVK 96 >gi|261337946|ref|ZP_05965830.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093] gi|270277441|gb|EFA23295.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093] Length = 93 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + + +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVPRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I V A S+LKK + + Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVTE 93 >gi|187734792|ref|YP_001876904.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|187424844|gb|ACD04123.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 101 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KT+T+ DLV IS E ++ + V + I + G+ + I +F TF VK+ Sbjct: 1 MAKTLTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVK 60 Query: 61 SRVGRNLQTN-QEVKIDPRRVVVFKASSILKKRIMD 95 +VGRN + Q+V I R VV FK LK ++ Sbjct: 61 PKVGRNPKNPDQDVPIPARSVVKFKVGKELKDQVAK 96 >gi|148826039|ref|YP_001290792.1| integration host factor subunit alpha [Haemophilus influenzae PittEE] gi|229847462|ref|ZP_04467559.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1] gi|166918506|sp|A5UCA8|IHFA_HAEIE RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|148716199|gb|ABQ98409.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] gi|229809603|gb|EEP45330.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1] Length = 96 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T V + RRVV FK L+ R+ Sbjct: 63 GRNPKTGDVVAVSARRVVTFKPGQKLRARVEK 94 >gi|302847610|ref|XP_002955339.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f. nagariensis] gi|300259411|gb|EFJ43639.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f. nagariensis] Length = 186 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV I+KE +++ +T+ +LFN + ++ G+ + + F TF + + + GRN Sbjct: 44 KAVLVDQIAKEAEITKAQATKAFDSLFNAVQEAVTSGKRVTVLGFGTFESRLRKEKNGRN 103 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +T + + I F+AS K+++ + Sbjct: 104 PRTGETITIPAATAPAFRASVSFKEKVNGKV 134 >gi|326385372|ref|ZP_08207017.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326210178|gb|EGD60950.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 49/92 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ ++L ++++ GL++ + V +FN I ++A +GE I +++F F VK +R Sbjct: 2 TMNTAELAEAVASSQGLTKAAARELVDAVFNAIVEAATKGEEISLNAFGKFKVKDTPARE 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T + I R + F + +K +I Sbjct: 62 GRNPSTGAVIAIAASRKLTFAPAKAVKDKING 93 >gi|227494793|ref|ZP_03925109.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436] gi|226831245|gb|EEH63628.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436] Length = 95 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 47/95 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M ++ R+ LV +I+ + +++ + + + +S GE +K++ + ++ Sbjct: 1 MDMSVNRTQLVAAIADKANITKVQADAALVAFQEVLTESLAAGETVKVTGLFSVERVERA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT ++++I V A S LKK + Sbjct: 61 ARTGRNPQTGEQIQIPAGFGVKISAGSTLKKAVAK 95 >gi|332288797|ref|YP_004419649.1| integration host factor protein subunit beta [Gallibacterium anatis UMN179] gi|330431693|gb|AEC16752.1| integration host factor protein subunit beta [Gallibacterium anatis UMN179] Length = 93 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ I++ +S K V + + + +G+ I+I F +F ++ + R Sbjct: 1 MTKSELIEKLINRHPTMSIKHIEFSVKEIIEHLSLTLEKGDRIEIRRFGSFALRYRQPRT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +V ++ + V FKA L++R+ + Sbjct: 61 GRNPKTGTQVSLEAKSVPHFKAGKELRERVDN 92 >gi|291515643|emb|CBK64853.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 86 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 46/81 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ V++I+ + +S+ D+ + V + S GE + ++ TF V+QK RVG Sbjct: 1 MNKAQFVEAIALDANISKIDARKAVDAMIRVTVQSLREGERLTLTGLGTFSVQQKSERVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKA 85 RN +T VKI PR+V+ F+ Sbjct: 61 RNPRTGAAVKIPPRKVIKFRP 81 >gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM 10152] gi|54017689|dbj|BAD59059.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM 10152] Length = 232 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTATAAVEHVVDTIVRAVHKGQSVTITGFGVFEQRKRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ V F+ + K I + Sbjct: 61 RNPRTGETVKVKATSVPAFRPGAQFKAVIAGKQK 94 >gi|167646182|ref|YP_001683845.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167348612|gb|ABZ71347.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + SDLV + ++ E L++ + + +F + D+AV+GE + I F F V+ K +R Sbjct: 1 MNVSDLVDAAVAAEPKLTKTQAKALIDGVFKALSDAAVKGEEVSIPGFGKFKVQAKPART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + V F A+ LK + Sbjct: 61 GRNPATGGTIEIAASKKVAFTAAKQLKDAVNG 92 >gi|325277743|ref|ZP_08143307.1| DNA-binding protein HU [Pseudomonas sp. TJI-51] gi|324097117|gb|EGB95399.1| DNA-binding protein HU [Pseudomonas sp. TJI-51] Length = 103 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ ++ LS+ + + V + I S + + F F ++ +RVG Sbjct: 1 MNKAQLIEQVAARAELSQAMAKKAVDAFIDGIKASLSTHTPVALVGFGRFETARRPARVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R+ ++ + + I V F+A LK + Sbjct: 61 RDPRSGKPLNIPAAMTVKFRAGKDLKDAV 89 >gi|86157913|ref|YP_464698.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197122784|ref|YP_002134735.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|220917567|ref|YP_002492871.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85774424|gb|ABC81261.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|196172633|gb|ACG73606.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|219955421|gb|ACL65805.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 90 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL++ + + LS++ V ++F + + + + F TF VK++ RV Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E++I P + V FK + LKK + Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >gi|291613189|ref|YP_003523346.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291583301|gb|ADE10959.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 95 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RSDL+ ++++ L KD V + +++ + +G ++I F +F + + R Sbjct: 1 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 GRN +T ++++ + FK LK+ Sbjct: 61 GRNPKTGAKIEVAAKYHPRFKPGKALKE 88 >gi|313886631|ref|ZP_07820343.1| DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332299532|ref|YP_004441453.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] gi|312923927|gb|EFR34724.1| DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332176595|gb|AEE12285.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 91 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 48/85 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K+++ + L++KD+ + I + +GE + + F +F+V ++ +R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAMVETIHEEMKKGERLTLVGFGSFYVSERAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N Q+ + ++I + + FK S+ L Sbjct: 61 INPQSGKTIQIKASKSIKFKPSTAL 85 >gi|91977359|ref|YP_570018.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5] gi|91683815|gb|ABE40117.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5] Length = 103 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + + L I +GE I+I V+++ +R Sbjct: 14 TVTLKHLAAALAEEHELSKKQTEAILGDLVARITKHLKKGERIRIVGLGILQVRKRAART 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + ++I + V F+A+ LK+ I Sbjct: 74 GRNPATGETIQIKASKKVAFRAAKELKEAI 103 >gi|224282721|ref|ZP_03646043.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171] gi|310287180|ref|YP_003938438.1| DNA-binding protein HU [Bifidobacterium bifidum S17] gi|311064042|ref|YP_003970767.1| DNA-binding protein [Bifidobacterium bifidum PRL2010] gi|313139879|ref|ZP_07802072.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171] gi|309251116|gb|ADO52864.1| DNA-binding protein HU [Bifidobacterium bifidum S17] gi|310866361|gb|ADP35730.1| DNA-binding protein [Bifidobacterium bifidum PRL2010] gi|313132389|gb|EFR50006.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171] Length = 93 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I V A S+LKK + + Sbjct: 64 NPRTGEIIEIPATYGVRISAGSLLKKAVTE 93 >gi|297202603|ref|ZP_06920000.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083] gi|197709867|gb|EDY53901.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083] Length = 215 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKNDVAVKKAPKGS 108 >gi|239982533|ref|ZP_04705057.1| putative histone-like DNA-binding protein [Streptomyces albus J1074] gi|291454376|ref|ZP_06593766.1| histone-like DNA binding protein [Streptomyces albus J1074] gi|291357325|gb|EFE84227.1| histone-like DNA binding protein [Streptomyces albus J1074] Length = 217 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+++ V + + + + V GE + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQNAAEAVDAVLDAMVRAVVAGERVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKNDVAVKKAPKGS 108 >gi|114047123|ref|YP_737673.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] gi|113888565|gb|ABI42616.1| histone family protein DNA-binding protein [Shewanella sp. MR-7] Length = 91 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++ I+ S+ + V + +I + GE + + F TF ++ + G Sbjct: 1 MNKAQLIQRIATSLEQSQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRFHLPKSG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + ++I FKA++ LKK I + Sbjct: 61 RNPQTGETIEIAGFNQPSFKAATALKKAINE 91 >gi|320096006|ref|ZP_08027619.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str. F0338] gi|319977077|gb|EFW08807.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str. F0338] Length = 93 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 48/92 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I++ L++ + + + + +S +GE +K++ + ++ +R Sbjct: 2 SVNRTELVAQIAERANLTKVQADAALGAFQDVLVESLSKGEPVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGFGVKLSAGSTLKKAVAK 93 >gi|295689634|ref|YP_003593327.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] gi|295431537|gb|ADG10709.1| histone family protein DNA-binding protein [Caulobacter segnis ATCC 21756] Length = 92 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 43/90 (47%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + + DS G+ +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIDAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + V + F+ LK + Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLNG 92 >gi|257469846|ref|ZP_05633938.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317064075|ref|ZP_07928560.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|313689751|gb|EFS26586.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] Length = 90 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V+ +K G ++K++ R V + D+ V+G+ I + + VK++ +R Sbjct: 1 MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDDITFVGWGKWEVKERAAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QTN++++I+ ++ V FK L ++ Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKVK 90 >gi|152967315|ref|YP_001363099.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151361832|gb|ABS04835.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 92 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS+LV ++++ GL++ D+ + L + + ++ +GEA+K+ T ++ +R G Sbjct: 1 MNRSELVTAVAQRAGLTQTDTDAVINALGDVLVEAVAKGEAVKLPGLMTVERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + ++I A S LK Sbjct: 61 RNPRTGETMEIAASYGAKLTAGSKLKAAANGS 92 >gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294815333|ref|ZP_06773976.1| Histone protein DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326443687|ref|ZP_08218421.1| histone-like DNA binding protein [Streptomyces clavuligerus ATCC 27064] gi|197706145|gb|EDY51957.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294327932|gb|EFG09575.1| Histone protein DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 222 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V ++ + I + V G+ + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDSVLDAIVRAVVAGDRVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGAKK 93 >gi|183602609|ref|ZP_02963974.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis HN019] gi|219683651|ref|YP_002470034.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis AD011] gi|241190683|ref|YP_002968077.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196089|ref|YP_002969644.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218250|gb|EDT88896.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis HN019] gi|219621301|gb|ACL29458.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis AD011] gi|240249075|gb|ACS46015.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250643|gb|ACS47582.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178420|gb|ADC85666.1| DNA-binding protein HU [Bifidobacterium animalis subsp. lactis BB-12] gi|295793672|gb|ADG33207.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis V9] Length = 93 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV IS++ GL++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVAKISQKSGLTKAQAEAAVNAFRDVFIEAMKNGEGLKLTGLLSAERVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I V A S+LKK + + Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVSE 93 >gi|21221395|ref|NP_627174.1| DNA-binding protein HU (hs1) [Streptomyces coelicolor A3(2)] gi|239981939|ref|ZP_04704463.1| DNA-binding protein HU (hs1) [Streptomyces albus J1074] gi|256787421|ref|ZP_05525852.1| DNA-binding protein HU (hs1) [Streptomyces lividans TK24] gi|289771320|ref|ZP_06530698.1| HSl protein [Streptomyces lividans TK24] gi|291453793|ref|ZP_06593183.1| DNA-binding protein Hu [Streptomyces albus J1074] gi|61222642|sp|P0A3H5|DBH1_STRCO RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl gi|61222644|sp|P0A3H6|DBH1_STRLI RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl gi|2104560|dbj|BAA19970.1| HSl protein [Streptomyces lividans TK24] gi|6063408|dbj|BAA85334.1| histone-like protein HSl [Streptomyces lividans] gi|6911980|emb|CAB72196.1| DNA-binding protein Hu (hs1) [Streptomyces coelicolor A3(2)] gi|289701519|gb|EFD68948.1| HSl protein [Streptomyces lividans TK24] gi|291356742|gb|EFE83644.1| DNA-binding protein Hu [Streptomyces albus J1074] Length = 93 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89 >gi|239904866|ref|YP_002951604.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239794729|dbj|BAH73718.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 100 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++D+V I ++ +R + V L + S R ++ +S F F K + Sbjct: 3 GKTLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN QTN + + PR+VVVF+ S + + D Sbjct: 63 RKGRNPQTNASIMLPPRKVVVFRLSRKFRAELNPD 97 >gi|119025570|ref|YP_909415.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703] gi|154487028|ref|ZP_02028435.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis L2-32] gi|171743350|ref|ZP_02919157.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC 27678] gi|212716910|ref|ZP_03325038.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum DSM 16992] gi|225350744|ref|ZP_03741767.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium pseudocatenulatum DSM 20438] gi|283455679|ref|YP_003360243.1| DNA-binding protein HU [Bifidobacterium dentium Bd1] gi|306823294|ref|ZP_07456670.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679] gi|309801902|ref|ZP_07696017.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022] gi|118765154|dbj|BAF39333.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703] gi|154084891|gb|EDN83936.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis L2-32] gi|171278964|gb|EDT46625.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC 27678] gi|212660195|gb|EEB20770.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum DSM 16992] gi|225158200|gb|EEG71442.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium pseudocatenulatum DSM 20438] gi|283102313|gb|ADB09419.1| DNA-binding protein HU [Bifidobacterium dentium Bd1] gi|304553926|gb|EFM41837.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679] gi|308221458|gb|EFO77755.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022] Length = 93 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I V A S+LKK + Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVTK 93 >gi|328948273|ref|YP_004365610.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] gi|328448597|gb|AEB14313.1| histone family protein DNA-binding protein [Treponema succinifaciens DSM 2489] Length = 108 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK +T++DL++++ + + + LF+++ + G I++ F TF + + Sbjct: 3 SKKVTKNDLLEAVYQNTKYEKLAVQTIMENLFDQMKEVLKDGNTIELRGFGTFEARLRKG 62 Query: 62 RV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 R RN +T Q++ + P VV F++ LKK + D N+ + Sbjct: 63 RQNARNPKTGQQLSVAPHYVVAFRSGQELKKALWDLPVSEVSNEQN 108 >gi|307329817|ref|ZP_07608972.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] gi|306884546|gb|EFN15577.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V GE + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVAGERVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|229817265|ref|ZP_04447547.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM 20098] gi|229785054|gb|EEP21168.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM 20098] Length = 94 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ + V + ++ GE +K++ + ++ +R GR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++I V A S+LKK + + Sbjct: 64 NPRTGETIEIPATYGVRISAGSLLKKAVTE 93 >gi|294676551|ref|YP_003577166.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003] gi|294475371|gb|ADE84759.1| DNA-binding protein HU-2 [Rhodobacter capsulatus SB 1003] Length = 91 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 44/87 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT ++SDLV +++ + G ++ + + I G + + F +F +QK Sbjct: 1 MGKTFSKSDLVDAVAAQTGFAKTNVKDMLDATLGVITAQTEAGSKVTLMGFGSFEQRQKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87 +R+GRN T ++V+I + FK + Sbjct: 61 ARMGRNPATGEQVEIPASAHLAFKPAK 87 >gi|196228197|ref|ZP_03127064.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] gi|196227600|gb|EDY22103.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] Length = 92 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 2/92 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++LV+++ K G +S+ + R V + I +G+ +++ F TF V + +R Sbjct: 1 MNKAELVEAVQKSLGKDVSKAQAERSVEAVIEGIKSGLKKGKPVQLVGFGTFKVTNRKAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +G N +T +++KI + V F A LK ++ Sbjct: 61 MGINPKTGEKIKIKASKSVKFAAGKDLKSKLK 92 >gi|87199239|ref|YP_496496.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87134920|gb|ABD25662.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 91 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL I+ GLS+ D+ + V ++F I D+A +GE + ++ F F VK +R G Sbjct: 1 MNNSDLADIIAANHGLSKADARKAVDSVFAAIADAAAKGEEVSLNGFGKFKVKNTPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T ++I + F A+ +K ++ Sbjct: 61 RNPSTGATIQIAASNKLTFAAAKAVKDKLNG 91 >gi|299147625|ref|ZP_07040689.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|298514412|gb|EFI38297.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] Length = 88 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 48/86 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + LS ++T V + I ++ +GE++ + F +F V+++ +R G Sbjct: 1 MNKSELIKEVALKGQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVVQERKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S ++ Sbjct: 61 HNSATGGSMLIPAKRQVKFRPGSKMR 86 >gi|198283417|ref|YP_002219738.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247938|gb|ACH83531.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 107 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ DL + + G + + +FV F + + + +K+S F F V+ K SR Sbjct: 2 TITKKDLANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T Q +I RRVV F AS++L+ + Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90 >gi|260061540|ref|YP_003194620.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] gi|88785672|gb|EAR16841.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501] Length = 96 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 48/96 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS+E G+ + D V + S G+ + + F +F +K + + G Sbjct: 1 MTKADIVSIISEELGMEKGDVQATVEKFMEAVKSSLENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + +++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKSNVQVK 96 >gi|37523114|ref|NP_926491.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421] gi|35214117|dbj|BAC91486.1| gll3545 [Gloeobacter violaceus PCC 7421] Length = 105 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R L++ ++ GL++K + + I D+ +G +K+S F +F V+++ +R Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +T Q V + VF + L++R+ Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96 >gi|282599288|ref|YP_003358600.1| putative DNA-binding protein [Shigella phage phiSboM-AG3] gi|226973594|gb|ACO94347.1| putative DNA-binding protein [Shigella phage phiSboM-AG3] Length = 92 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++ V I+ +++ ++ + V + + + + G ++++ F F VK + +R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN Q ++I+ + VV FK LK Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAANG 91 >gi|300775502|ref|ZP_07085363.1| integration host factor subunit alpha [Chryseobacterium gleum ATCC 35910] gi|300505529|gb|EFK36666.1| integration host factor subunit alpha [Chryseobacterium gleum ATCC 35910] Length = 96 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +IS + G + ++ + V EI S G+ + + F +F +K + ++ G Sbjct: 1 MTKAELVNTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFIIKTRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N ++I + FK S +++ + + Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKSFVEKVKTKVAVK 96 >gi|298530305|ref|ZP_07017707.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509679|gb|EFI33583.1| histone family protein DNA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 96 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M T+T+SDLV + ++ R + + L + I + + ++ IS F F K Sbjct: 1 MVNTLTKSDLVDRVYEQSDRKRAEVKGQIEHLLDIIKQAIKKDHSLLISGFGKFETYDKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN QT++ + + R+VVVF+ S + I Sbjct: 61 PRKGRNPQTSEAIILPGRKVVVFRLSRKFRSEINQ 95 >gi|298345223|ref|YP_003717910.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063] gi|304390783|ref|ZP_07372735.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655645|ref|ZP_07908543.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333] gi|315656440|ref|ZP_07909329.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235284|gb|ADI66416.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063] gi|304325666|gb|EFL92912.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315489709|gb|EFU79336.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333] gi|315492999|gb|EFU82601.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 94 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I+K+ GLS+ ++ ++ + DS +GE +K++ + +R Sbjct: 2 SVNRTELVAEIAKKAGLSKTEADGALSAFQEILIDSLKKGETVKVTGLMNVERVSRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+KI V A S LKK + + Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAVSN 93 >gi|228469565|ref|ZP_04054558.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] gi|228308915|gb|EEK17590.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] Length = 90 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +K+++ + L++KD+ + I + +GE + + F +F+V Q+ +R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N ++ + + I + + FK S+ L Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >gi|3641282|gb|AAC36331.1| histone-like protein [Caulobacter crescentus CB15] Length = 92 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + DS G+ +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + V F+ LK + Sbjct: 63 NPRTGETVNRPASNTARFQVGEGLKSSLN 91 >gi|255534616|ref|YP_003094987.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10] gi|255340812|gb|ACU06925.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10] Length = 96 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +IS + G + ++ + V EI S G+ + + F +F +K + ++ G Sbjct: 1 MTKAELVSTISNKLGTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFVIKTRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N ++I + FK S +++ + + Sbjct: 61 RNISKNTAIEIPAHNIPAFKPSKTFVEKVKTKVAVK 96 >gi|114799692|ref|YP_759440.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] gi|114739866|gb|ABI77991.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] Length = 88 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L K+++ GLS+ D+ + V LF + +A + + I+ F TF K + +R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN T + +KI + + FK +S LK Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87 >gi|255589015|ref|XP_002534800.1| DNA-binding protein HU-alpha, putative [Ricinus communis] gi|223524551|gb|EEF27583.1| DNA-binding protein HU-alpha, putative [Ricinus communis] Length = 348 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTR----FVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + +L+ +++ G S+ + + + + + RGEA+++ +F +F + Sbjct: 1 MNKQELIDAVAASTGESKASTGEGEGEALDAILEAVTSAVTRGEAVQLIAFGSFSTGARS 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVV 82 R GRN T + + I + Sbjct: 61 ERTGRNPSTGETITIPAAKTAK 82 >gi|218282536|ref|ZP_03488786.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989] gi|218216523|gb|EEC90061.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989] Length = 94 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 52/93 (55%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +T+ D++ +I+++ L++KD T V +I + G+ + ++ F F + ++ +R Sbjct: 2 EKLTKKDIISNIAEDSHLTKKDITEVVDLALTQIFEGLSEGKTVDLAGFGKFEITERKAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N T ++++I+ + V FK + LK+ + Sbjct: 62 EGINPLTKEKIQIEASKSVKFKIAKALKEAVNK 94 >gi|32035258|ref|ZP_00135276.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208092|ref|YP_001053317.1| integration host factor subunit alpha [Actinobacillus pleuropneumoniae L20] gi|165976025|ref|YP_001651618.1| integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149925|ref|YP_001968450.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251009|ref|ZP_07337196.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252240|ref|ZP_07338408.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245471|ref|ZP_07527559.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247585|ref|ZP_07529629.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249814|ref|ZP_07531791.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252164|ref|ZP_07534063.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254425|ref|ZP_07536263.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256636|ref|ZP_07538416.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258884|ref|ZP_07540616.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261070|ref|ZP_07542750.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263249|ref|ZP_07544869.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322514396|ref|ZP_08067442.1| integration host factor subunit alpha [Actinobacillus ureae ATCC 25976] gi|166918495|sp|A3MZX6|IHFA_ACTP2 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707365|sp|B3H139|IHFA_ACTP7 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|226707366|sp|B0BNN9|IHFA_ACTPJ RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|126096884|gb|ABN73712.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876126|gb|ABY69174.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915056|gb|ACE61308.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649023|gb|EFL79211.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650140|gb|EFL80309.1| integration host factor, alpha chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853812|gb|EFM86029.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855950|gb|EFM88109.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858164|gb|EFM90243.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860464|gb|EFM92478.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862724|gb|EFM94680.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864884|gb|EFM96787.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867235|gb|EFM99091.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869247|gb|EFN01044.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871466|gb|EFN03190.1| Integration host factor subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|322119712|gb|EFX91762.1| integration host factor subunit alpha [Actinobacillus ureae ATCC 25976] Length = 98 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +L +S+ ++ G ++ + FV F EI S +GE +K+S F F +++K +R Sbjct: 2 ALTKIELAESLVEKCGFDKRIAKLFVEQFFEEIRSSLEKGEEVKLSGFGNFSLREKNARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK L+ R+ + Sbjct: 62 GRNPKTGETVAVTARRVVVFKPGQKLRDRVEN 93 >gi|253584243|ref|ZP_04861441.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] gi|251834815|gb|EES63378.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] Length = 90 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 51/90 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V+ +K G ++K++ R V + D+ V+G+ I + + VK++ +R Sbjct: 1 MTKKEFVELYAKNGGFTKKEAERAVNLFLASVEDTLVKGDNITFVGWGKWEVKERAAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QTN++++I+ ++ V FK L +I Sbjct: 61 RNPQTNKKMRIEAKKAVKFKVGKTLADKIK 90 >gi|261492544|ref|ZP_05989097.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311703|gb|EEY12853.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 99 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 58/93 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ ++FGL ++ + +FV F EI S GE +K+S F F +++K +R Sbjct: 3 ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + RRVVVFKA L++R+ Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERVEQA 95 >gi|148555235|ref|YP_001262817.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148500425|gb|ABQ68679.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 91 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +D+ ++ E G+ + + R + I D+A +G+ + + F F V + +R G Sbjct: 1 MNTADIAGVVAAEQGIDKAAAKRVIDAALKAITDAAKKGDEVSLPGFGKFKVTDRPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + I + V F A+ LK + Sbjct: 61 RNPATGATLTIAASKKVSFTAAKALKDALNG 91 >gi|124007135|sp|Q4UKH2|DBH_RICFE RecName: Full=DNA-binding protein HU Length = 99 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 44/97 (45%), Gaps = 9/97 (9%) Query: 5 ITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 + +++ + + + L++ D+ + + + + + + I I+ F +F Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + + +R GRN +T ++KID F+A +K+ Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 97 >gi|227539321|ref|ZP_03969370.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33300] gi|227241003|gb|EEI91018.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33300] Length = 136 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS + GL + D V F + +S + GE + + F +F VK++ + Sbjct: 43 MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKNSMIGGENVYVRGFGSFVVKKRAEKTA 102 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I V FK + + +++ + + Sbjct: 103 RNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 136 >gi|217976981|ref|YP_002361128.1| histone family protein DNA-binding protein [Methylocella silvestris BL2] gi|217502357|gb|ACK49766.1| histone family protein DNA-binding protein [Methylocella silvestris BL2] Length = 118 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 3 KTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T TR+ L+ ++ + LSR + EI ++ VRG+ +K+ SF F V+ K Sbjct: 16 RTATRAALLDAVYEACPNLSRAQARDIFEMALEEIAEALVRGDCVKLRSFGLFSVRAKRE 75 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T E I PRRV+ FK S +L + Sbjct: 76 RIGRNPRTGVEAPIKPRRVLTFKPSPVLSGCVNGA 110 >gi|261878950|ref|ZP_06005377.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] gi|270334461|gb|EFA45247.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] Length = 91 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LVK I+ GLS D+ + + I ++ V G+ +++ F TF K++ +R G Sbjct: 1 MNKTELVKKIADATGLSAADAKKALDATTCAIKEALVDGDKVQLIGFGTFSTKERPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + ++++I + VV F S ++ + Sbjct: 61 VNPSSGEKIQIAAKTVVKFNPGSEFEEAVNK 91 >gi|78358396|ref|YP_389845.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220801|gb|ABB40150.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 95 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSISKEFGL-----SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+++L ++ + L + K ++ + I G+ ++++ F F V ++ Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+GRN +T + V+I V F LK+ + Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95 >gi|254362042|ref|ZP_04978168.1| integration host factor alpha subunit [Mannheimia haemolytica PHL213] gi|261495203|ref|ZP_05991665.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093596|gb|EDN74564.1| integration host factor alpha subunit [Mannheimia haemolytica PHL213] gi|261309128|gb|EEY10369.1| integration host factor alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 98 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 58/93 (62%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ ++FGL ++ + +FV F EI S GE +K+S F F +++K +R Sbjct: 2 ALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + RRVVVFKA L++R+ Sbjct: 62 GRNPKTGENVAVSARRVVVFKAGQKLRERVEQA 94 >gi|16126202|ref|NP_420766.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|221234973|ref|YP_002517409.1| DNA-binding protein HU [Caulobacter crescentus NA1000] gi|239977107|sp|B8GX11|DBH_CAUCN RecName: Full=DNA-binding protein HU gi|239977108|sp|P0CAV2|DBH_CAUCR RecName: Full=DNA-binding protein HU gi|13423420|gb|AAK23934.1| DNA-binding protein HU [Caulobacter crescentus CB15] gi|220964145|gb|ACL95501.1| DNA-binding protein HU [Caulobacter crescentus NA1000] Length = 92 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 42/89 (47%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + DS G+ +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + V + F+ LK + Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLN 91 >gi|3334235|sp|P95516|IHFA_PASHA RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|1842235|gb|AAC44843.1| integration host factor Alpha subunit [Mannheimia haemolytica] Length = 99 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ ++FGL ++ + FV F EI S GE +K+S F F +++K +R Sbjct: 3 ALTKIEIAENLIEKFGLEKRVANEFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARP 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T + V + RRVVVFKA L++R+ Sbjct: 63 GRNPKTGENVAVSARRVVVFKAGQKLRERVEQA 95 >gi|57238839|ref|YP_179975.1| integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58578769|ref|YP_196981.1| integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58616828|ref|YP_196027.1| integration host factor alpha-subunit [Ehrlichia ruminantium str. Gardel] gi|57160918|emb|CAH57823.1| putative integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58416440|emb|CAI27553.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str. Gardel] gi|58417395|emb|CAI26599.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str. Welgevonden] Length = 99 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 59/96 (61%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+T+S + + I+++ GLSR+D+ V + +E+ ++ + +KISSF TF +K Sbjct: 1 MTETLTKSKIAEVINRDIGLSREDAASIVGEILDEMINALAKDRILKISSFGTFKSYKKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R+GRN +T +E I V F S ++K I DD Sbjct: 61 ARIGRNPKTAEEFIIKEHNTVSFYPSILVKHSINDD 96 >gi|329936537|ref|ZP_08286273.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045] gi|329304052|gb|EGG47934.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045] Length = 93 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|157803381|ref|YP_001491930.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel] gi|157784644|gb|ABV73145.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel] Length = 110 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 47/100 (47%), Gaps = 9/100 (9%) Query: 2 SKTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52 SK + +++ + + + L++ D+ + + + + + ++ I I+ F Sbjct: 9 SKKMNKTEFIAFMTNHGRNHKHASYKSLTKADAEKALNLVLDSVINAIKSHYNINITGFG 68 Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 +F + + +R GRN +T ++KID F+A +K+ Sbjct: 69 SFEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108 >gi|311068519|ref|YP_003973442.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus atrophaeus 1942] gi|310869036|gb|ADP32511.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus atrophaeus 1942] Length = 91 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 50/72 (69%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +++++ G+++K++T V +F + ++ +GE IK+S F TF V+++ +R G Sbjct: 1 MNKAELVGAVAEKLGVTKKEATPKVEAVFEVLAETLSKGEEIKVSGFGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKID 76 RN Q+ +E+ I Sbjct: 61 RNPQSGEEIDIP 72 >gi|309813267|ref|ZP_07706983.1| DNA-binding protein HU [Dermacoccus sp. Ellin185] gi|308432763|gb|EFP56679.1| DNA-binding protein HU [Dermacoccus sp. Ellin185] Length = 119 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + + ++DLV + G S+K + V + + I G + I+ F TF + Sbjct: 8 VGRKMNKADLVDRLEVRLG-SKKAALEAVEAVVDVIIREVAAGNKVGITGFGTFERVDRA 66 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 +R GRN +T + V+I V F + K Sbjct: 67 ARTGRNPRTGEAVRIGATSVPKFTPGTNFKA 97 >gi|171915587|ref|ZP_02931057.1| histone family protein DNA-binding protein [Verrucomicrobium spinosum DSM 4136] Length = 91 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++L++++ K G S++ ++ V + I + +++ F TF V ++ +R Sbjct: 1 MNKAELIEAVQKNLGGDTSKRAASDAVEAVLASISKGVAKTGTVQLIGFGTFKVAKRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T + +KI + V F SS LK + Sbjct: 61 TGRNPKTGEAMKIKASKTVRFVPSSALKGAL 91 >gi|269796894|ref|YP_003316349.1| nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542] gi|269099079|gb|ACZ23515.1| bacterial nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542] Length = 94 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R+DLV +I+ + GL++ D+ ++ L + +S GEA+K++ + ++ +R Sbjct: 2 SLNRTDLVSAIAGKSGLTKTDADAALSALQEVLVESLSAGEAVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+ I V A S+LKK + Sbjct: 62 GRNPRTGEEISIPAGFGVKISAGSLLKKAV 91 >gi|149369658|ref|ZP_01889510.1| DNA-binding protein HU [unidentified eubacterium SCB49] gi|149357085|gb|EDM45640.1| DNA-binding protein HU [unidentified eubacterium SCB49] Length = 96 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 49/96 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS++ G+ + D V T E+ S G+ + + F +F +K + + G Sbjct: 1 MTKADIVAKISEKLGMEKGDVQATVETFMAEVKTSLESGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + ++ + Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNVEVK 96 >gi|229821233|ref|YP_002882759.1| histone family protein DNA-binding protein [Beutenbergia cavernae DSM 12333] gi|229567146|gb|ACQ80997.1| histone family protein DNA-binding protein [Beutenbergia cavernae DSM 12333] Length = 93 Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 50/90 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV +I+ + L++ + ++ L + + S +GE +K++ + ++ +R Sbjct: 2 SVNRTELVAAIADKASLTKVQADAALSALQDVLVTSLSKGETVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E++I V A S+LK + Sbjct: 62 GRNPRTGEEIQIPAGYGVKISAGSVLKSAV 91 >gi|197105274|ref|YP_002130651.1| DNA-binding protein [Phenylobacterium zucineum HLK1] gi|196478694|gb|ACG78222.1| DNA-binding protein [Phenylobacterium zucineum HLK1] Length = 91 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +I+ + GL++ + + + S G +++ F +F ++ + + Sbjct: 1 MTKAELVSAIADKAGLNKAQAKEALDAFIASVSTSLKAGREVRLVGFGSFVPVKRAAGMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++V+ + F+ LK + Sbjct: 61 RNPRTGEKVRRPASQTCRFRVGEALKSTLN 90 >gi|300774175|ref|ZP_07084043.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33861] gi|300758986|gb|EFK55814.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33861] Length = 135 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS + GL + D V F + +S + GE + + F +F VK++ + Sbjct: 42 MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKNSMIGGENVYVRGFGSFVVKKRAEKTA 101 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I V FK + + +++ + + Sbjct: 102 RNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 135 >gi|116695179|ref|YP_840755.1| HU family DNA-binding protein [Ralstonia eutropha H16] gi|113529678|emb|CAJ96025.1| DNA-binding protein HU family [Ralstonia eutropha H16] Length = 93 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ E LS + R + + I + +G+++ + F +F ++ +R G Sbjct: 1 MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSAGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFKDAVNK 91 >gi|254453509|ref|ZP_05066946.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|254455028|ref|ZP_05068464.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|198263730|gb|EDY88001.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] gi|198267915|gb|EDY92185.1| integration host factor, beta subunit [Octadecabacter antarcticus 238] Length = 95 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+L I+ + L + + V T+F I + RG ++I F F +Q+ R+ Sbjct: 2 MIRSELYAKIAAENRHLMHEQAVAVVDTIFETITAALERGNRVEIRGFGAFSCRQREGRI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN + V + P+ + FK +++ R+ Sbjct: 62 GRNPKNGASVDVAPKVIPWFKLGKVIRDRLN 92 >gi|91200990|emb|CAJ74047.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 103 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 52/102 (50%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T T+ DL + I+++ + + + +EI +G I++ F F ++Q+ +R Sbjct: 2 QTTTKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN +T + + + VVVFK ++++++ + + + + Sbjct: 62 KARNPRTGEVAFVPSKNVVVFKVGKLMREKVGNSPQTQPPAQ 103 >gi|73666740|ref|YP_302756.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake] gi|72393881|gb|AAZ68158.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str. Jake] Length = 100 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 61/96 (63%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+T+S + + I+K+ GLSR+D+ V + +E+ ++ VR +KISSF TF +K Sbjct: 1 MTQTLTKSKIAEVINKDVGLSREDAASIVGEVLDEMINALVRDHILKISSFGTFKSYKKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R+GRN +T++ I R V F S ++K I +D Sbjct: 61 ARMGRNPKTSEAFVIKERNTVSFYPSILVKHSINND 96 >gi|239813722|ref|YP_002942632.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] gi|239800299|gb|ACS17366.1| histone family protein DNA-binding protein [Variovorax paradoxus S110] Length = 125 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+ I+ +S+ ++ R + T+ I + +G+ +++ F TF + +R G Sbjct: 1 MNRIELVEKIATAHNVSKAEAARILETVTGSIVAAVKKGDPVQLIGFGTFKQVARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N Q ++KI ++V F + K I Sbjct: 61 FNPQAGAKIKIAAQKVPKFVPGAAFKAAI 89 >gi|293371796|ref|ZP_06618206.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292633248|gb|EFF51819.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] Length = 88 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+K ++ + LS ++T V + I ++ +GE + + F +F ++ + +R G Sbjct: 1 MNKSELIKEVALKRKLSFNEATNAVDAIMEAIAETMHKGEGVTLVGFGSFVIQGRKARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + I +R V F+ S +K Sbjct: 61 HNPATGGSMLIPAKRQVKFRPGSKMK 86 >gi|239928724|ref|ZP_04685677.1| histone-like DNA binding protein [Streptomyces ghanaensis ATCC 14672] gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672] gi|291339943|gb|EFE66899.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672] Length = 212 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKKAPKGS 108 >gi|118602642|ref|YP_903857.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567581|gb|ABL02386.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 95 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 52/89 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +IT+ D+ ++ K ++ + F++I + GE++K+SSF F +++K SR Sbjct: 2 SITKKDIASALVKSMDITHVQALAITHDFFDQIKQTLASGESVKLSSFGNFVIREKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T + V+I R+VVVFK+ LK Sbjct: 62 GRNPKTGELVEILARKVVVFKSGLKLKSA 90 >gi|184200009|ref|YP_001854216.1| HU_IHF family transcriptional regulator [Kocuria rhizophila DC2201] gi|183580239|dbj|BAG28710.1| putative DNA-binding protein HU [Kocuria rhizophila DC2201] Length = 94 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV ++++ G ++ + +LF S +GE I I + + + +R Sbjct: 2 AMNRSELVAEVAEKSGNTQAAVNGVLDSLFEVFESSVSKGEKITIPGWMSVERTDRAARQ 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + ++I V A S LK + Sbjct: 62 GRNPQTGEAIQIPAGHGVKLTAGSKLKAAV 91 >gi|313886994|ref|ZP_07820694.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332299884|ref|YP_004441805.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] gi|312923520|gb|EFR34329.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica PR426713P-I] gi|332176947|gb|AEE12637.1| histone family protein DNA-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 90 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++VKSI+ GL R++ + V + + ++ +G+ + + F +F VK++ + Sbjct: 1 MTKAEVVKSIADTTGLDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ + + R+V FK S Sbjct: 61 RNISKQTTIIVPARKVPTFKPSKAF 85 >gi|297571677|ref|YP_003697451.1| histone family protein DNA-binding protein [Arcanobacterium haemolyticum DSM 20595] gi|296932024|gb|ADH92832.1| histone family protein DNA-binding protein [Arcanobacterium haemolyticum DSM 20595] Length = 93 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 54/92 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++L+ I++E +++ D+ + ++ L + + +S +GEA+KI+ + ++ +R Sbjct: 2 SLNRTELIAKIAEEASITKTDADKAISALQSVLVESLAKGEAVKITGLMSVERTERAARK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKISAGSTLKKAVAK 93 >gi|86608376|ref|YP_477138.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556918|gb|ABD01875.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)] Length = 101 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV----RGE---AIKISSFATFHVK 57 + +++LV +++ +++K++ ++ I + GE + + F +F + Sbjct: 1 MNKAELVDAVAHRANVTKKEAEAVISAALEIIVEEVASRDENGEPKGKVILVGFGSFEAR 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 ++ R GRN +TNQ++ I R V F A ++ + Sbjct: 61 KRKEREGRNPKTNQKMVIPERIVPTFAAGKSFREAVAGG 99 >gi|325284684|ref|YP_004264147.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] gi|324316173|gb|ADY27287.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] Length = 89 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 50/86 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S LV+ ++++ GL++K + V+T+ + + ++ G+A+ + T VK+ +R G Sbjct: 1 MNKSQLVEKVAEQTGLTKKQADEAVSTMLDTVVEALRGGQAVGLPGLGTLSVKETAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 T ++++I + V FK ++ LK Sbjct: 61 VKPGTTEKIQIPAGKKVAFKVATTLK 86 >gi|68171301|ref|ZP_00544701.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88657660|ref|YP_506989.1| integration host factor, alpha subunit [Ehrlichia chaffeensis str. Arkansas] gi|67999282|gb|EAM85931.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599117|gb|ABD44586.1| integration host factor, alpha subunit [Ehrlichia chaffeensis str. Arkansas] Length = 100 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 62/96 (64%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+T+S + + I+++ GLSR+D++ V + +E+ ++ V+ +KISSF TF +K Sbjct: 1 MTQTLTKSKIAEVINRDVGLSREDASSVVGEILDEMLNALVKDRILKISSFGTFKSYKKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R+GRN +T++E I R V F S ++K I D Sbjct: 61 ARMGRNPKTSEEFVIKERYTVSFYPSILIKHSINSD 96 >gi|157825356|ref|YP_001493076.1| DNA-binding protein HU [Rickettsia akari str. Hartford] gi|157799314|gb|ABV74568.1| DNA-binding protein HU [Rickettsia akari str. Hartford] Length = 110 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + ++ L++ D+ + + + + + + I I+ F + Sbjct: 10 KKMNKTEFIAFMTDHAHNHKHASHKTLTKADAEKALNLVLDSVISAIRSHYNINITGFGS 69 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + +R GRN +T ++KID F+A +K+ Sbjct: 70 FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108 >gi|73537872|ref|YP_298239.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] gi|94313671|ref|YP_586880.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34] gi|72121209|gb|AAZ63395.1| HU family DNA-binding protein [Ralstonia eutropha JMP134] gi|93357523|gb|ABF11611.1| Histone-like bacterial DNA-binding protein [Cupriavidus metallidurans CH34] Length = 93 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ E LS + R + + I + +G+++ + F +F ++ +R G Sbjct: 1 MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSSGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFKDAVNK 91 >gi|253582214|ref|ZP_04859437.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835753|gb|EES64291.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 92 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + + ++ ++ D+ + I + V GE I F F V + +R Sbjct: 1 MTKKEFIDLYFEKGEFATKIDAEKKAAAFLAVIEEGLVSGEDITFLGFGKFEVADRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++++ ++VV FKA L +++ Sbjct: 61 CRNPQTGEEMEVEAKKVVKFKAGKGLSEKVNQ 92 >gi|149072008|ref|YP_001293578.1| DNA binding protein hu-like protein [Rhodomonas salina] gi|134302959|gb|ABO70763.1| DNA binding protein hu-like protein [Rhodomonas salina] Length = 92 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLV+ ++K+ L++K+S +TT+ I + GE + + F +F +++ +R G Sbjct: 1 MNKKDLVEIVAKKRNLTKKESEEIITTILETIIKTVSEGEKVTLVGFGSFEARERQAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + ++I RV F K ++ + Sbjct: 61 RNPKTGERLQIPASRVPTFSVGKFFKDKVSN 91 >gi|317503239|ref|ZP_07961297.1| DNA-binding protein HU [Prevotella salivae DSM 15606] gi|315665652|gb|EFV05261.1| DNA-binding protein HU [Prevotella salivae DSM 15606] Length = 97 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 48/96 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ D + V TL + +S GE + +S F TF VK++ RV Sbjct: 1 MNNKEFISEMALRSGYTQADVQKLVNTLIEGMGNSFEAGENVSLSGFGTFEVKKRMERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 N T + + P+ V+ FK ++ +K+++ + Sbjct: 61 VNPSTGLRMLVPPKLVLAFKPNASVKEKLKNGGENN 96 >gi|328885294|emb|CCA58533.1| Integration host factor beta subunit [Streptomyces venezuelae ATCC 10712] Length = 234 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAAEAVDHVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV-TSPSGS 113 RN QT + V++ V F+A K + + K + V +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGEVSVKKAPKGS 109 >gi|294631600|ref|ZP_06710160.1| DNA-binding protein HU [Streptomyces sp. e14] gi|292834933|gb|EFF93282.1| DNA-binding protein HU [Streptomyces sp. e14] Length = 212 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKKAPKGS 108 >gi|103488110|ref|YP_617671.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] gi|98978187|gb|ABF54338.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256] Length = 91 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL +++ G+S+ D+ ++V +F I D+A +GE I ++ F F VK +R G Sbjct: 1 MNNSDLADALAASNGISKSDARKYVDGVFAAIADAAAKGEEISLNGFGKFKVKDSPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + ++I + + F + +K ++ Sbjct: 61 RNPSTGETIQIAASKKLTFAPAKAVKDKLNG 91 >gi|67459500|ref|YP_247124.1| DNA-binding protein HU [Rickettsia felis URRWXCal2] gi|239946853|ref|ZP_04698606.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes scapularis] gi|67005033|gb|AAY61959.1| DNA-binding protein HU [Rickettsia felis URRWXCal2] gi|239921129|gb|EER21153.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes scapularis] Length = 110 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + + + L++ D+ + + + + + + I I+ F + Sbjct: 10 KKMNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLDSVISAIKSHHNINITGFGS 69 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + +R GRN +T ++KID F+A +K+ Sbjct: 70 FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108 >gi|242281191|ref|YP_002993320.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] gi|242124085|gb|ACS81781.1| histone family protein DNA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 97 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 48/94 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 T+T++ +V I ++ +R + V ++ + + + + A+ IS F F K + Sbjct: 4 GNTLTKASVVDYIYEKTDRNRAEIKELVESILDIMKQAVKKDHAMLISGFGKFEAYDKNA 63 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN QTN+ + + R+VVVF+ S + + Sbjct: 64 RKGRNPQTNEAITLPARKVVVFRLSRKFRAELNG 97 >gi|302384103|ref|YP_003819926.1| histone family protein DNA-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302194731|gb|ADL02303.1| histone family protein DNA-binding protein [Brevundimonas subvibrioides ATCC 15264] Length = 92 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ +++K+ G+S+ D+ R + I S + G ++IS+ F + +R GR Sbjct: 3 TQAELIAAVAKDAGVSQADAGRVLEAFVKNIHSSLIAGGDVRISNLGVFDTAARAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + V F+ S LK + Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAVNK 92 >gi|291059654|gb|ADD72389.1| DNA-binding protein HU [Treponema pallidum subsp. pallidum str. Chicago] Length = 154 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 49/95 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 TRS +V ++ E LSR+ R V + + + + RGE +++ F F + + + VG+ Sbjct: 56 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 115 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +++T + V I VVVF+ S LK + G Sbjct: 116 SIKTGEVVSIPSHCVVVFRPSKRLKSAVRGYRSGE 150 >gi|34499324|ref|NP_903539.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC 12472] gi|34105175|gb|AAQ61531.1| probable DNA-binding protein hu-beta [Chromobacterium violaceum ATCC 12472] Length = 89 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ +S + GL++ D R + + D+ I I + F VK+ +R G Sbjct: 1 MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVA-GKFKVKETAARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + ++I +R V F AS LK RI Sbjct: 60 RNPKTGETIQIAAKRKVSFVASKQLKDRIA 89 >gi|329936762|ref|ZP_08286469.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus M045] gi|329303992|gb|EGG47875.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus M045] Length = 222 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN QT + V++ V F+A K + + K + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGE 99 >gi|296446427|ref|ZP_06888371.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296256062|gb|EFH03145.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 94 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ +++ S+ +T + + I + +GE +++ F TF VK++ + VG Sbjct: 2 VNKLELVEHVAEATDTSKAAATAAIDAVLEGITMALKKGEEVRLVGFGTFSVKKRAAGVG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +E++I FK + LK + Sbjct: 62 RNPATGEEIQIPESTSARFKPGATLKAALNK 92 >gi|257463308|ref|ZP_05627706.1| histone family protein DNA-binding protein [Fusobacterium sp. D12] gi|317060887|ref|ZP_07925372.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|313686563|gb|EFS23398.1| DNA-binding protein HU [Fusobacterium sp. D12] Length = 93 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V +++K+ ++ K++ R + + +S V G +K F T+ K++ +R Sbjct: 1 MTKKEFVAALAKKAEVTGKEADRMLKCFLELVEESLVAGNDVKFIGFGTWETKKREARKL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +RVV FK L ++ Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKVA 90 >gi|225174944|ref|ZP_03728941.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225169584|gb|EEG78381.1| histone family protein DNA-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 84 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 45/81 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D+ +SI+++ + KD+ V L + I +S GEA+K++ F TF ++ R Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKA 85 RN +T + V++ F+A Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81 >gi|290959979|ref|YP_003491161.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22] gi|260649505|emb|CBG72620.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22] Length = 93 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|71907290|ref|YP_284877.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71846911|gb|AAZ46407.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 94 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 7 RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 RS+L + + + F L+R D V + I +G +++ F +F + + R+GR Sbjct: 4 RSELSQRLHQRFPQLNRGDIDVAVGEILGAIGQQLAKGGRVEVRGFGSFALNYRPPRLGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T + V + + FKA L++ + Sbjct: 64 NPMTGERVAVPAKWTPHFKAGKELRELV 91 >gi|167854637|ref|ZP_02477417.1| integration host factor, alpha chain [Haemophilus parasuis 29755] gi|219870912|ref|YP_002475287.1| integration host factor subunit alpha [Haemophilus parasuis SH0165] gi|254803517|sp|B8F4T7|IHFA_HAEPS RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|167854174|gb|EDS25408.1| integration host factor, alpha chain [Haemophilus parasuis 29755] gi|219691116|gb|ACL32339.1| integration host factor, alpha chain/bacterial nucleoid DNA-binding protein [Haemophilus parasuis SH0165] Length = 98 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 57/93 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +++ + GL ++ + +FV F EI S GE +K+S F F V+ K +R Sbjct: 2 ALTKIEIAENLVERCGLDKRIAKQFVEDFFEEIRRSLESGEEVKLSGFGNFTVRDKKARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN +T ++V + RRVVVFKA L++R+ + Sbjct: 62 GRNPKTGEDVAVSARRVVVFKAGQKLRERVENA 94 >gi|85716441|ref|ZP_01047413.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A] gi|85696798|gb|EAQ34684.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A] Length = 112 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L +++++ LS+K + +T + I +G+ I+I V+++ +R Sbjct: 23 TVTLKHLAAALAEDHELSKKAAEAILTDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 82 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +E++I + V F+A+ LK+ I Sbjct: 83 GRNPATGEEIQIKASKKVAFRAAKELKEAI 112 >gi|260904564|ref|ZP_05912886.1| HU_IHF family transcriptional regulator [Brevibacterium linens BL2] Length = 95 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV +++ GL++K + + +F+ D +GE + I + + ++ Sbjct: 1 MAK--NRSELVAEVAENSGLTQKQVSDVLDGVFDVFSDVVGKGEKLTIPGWLSVERTERA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 +R GRN QT +E++I V A S LK Sbjct: 59 ARKGRNPQTGEEIQIKAGYSVKLSAGSKLKAA 90 >gi|118602598|ref|YP_903813.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567537|gb|ABL02342.1| histone family protein DNA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 101 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ ++S LS+ D+ V + E+ V G+ I+I F F+ K + R G Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T++ ++ + V FK +LK+ + Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIVNK 100 >gi|301061082|ref|ZP_07201879.1| putative integration host factor subunit alpha [delta proteobacterium NaphS2] gi|300444876|gb|EFK08844.1| putative integration host factor subunit alpha [delta proteobacterium NaphS2] Length = 93 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +++ I K+ + + R +L + + GE I IS F F V++K +R Sbjct: 2 TLTKERIIERIWKDTDQKKAEIQRTFESLVEIMKQTLASGEDIMISGFGKFCVREKKARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + + +D R+VV FK S L++++ Sbjct: 62 GRNPQTGEAMDLDGRKVVTFKCSGKLREKLN 92 >gi|318056820|ref|ZP_07975543.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actG] gi|318080704|ref|ZP_07988036.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actF] Length = 107 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 15 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 74 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 75 ARNPQTGEPIQIAAGYSVKVSAGSKLKEA 103 >gi|146277321|ref|YP_001167480.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|146278163|ref|YP_001168322.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145555562|gb|ABP70175.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145556404|gb|ABP71017.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 90 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + +SDLV +++++ G+SR + ++I ++ G++I ++ F +F + + Sbjct: 1 MTR-LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRP 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 +R GRN +T + V I + F S Sbjct: 60 ARTGRNPRTGEAVAIPASTSIGFTPS 85 >gi|197294415|ref|YP_001798956.1| nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] gi|197294469|ref|YP_001799010.1| nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] gi|171853742|emb|CAM11665.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] gi|171853796|emb|CAM11731.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma australiense] Length = 95 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63 +T+ +L+++I+K +S + F + ++ + + + S TF ++ + +R+ Sbjct: 1 MTKKELIRAIAKRQNISIVQTEEFYNAFEQVLFEAIAANDEVILSPSIGTFALRHRQARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT ++++I + VVF+ S +K+ + D Sbjct: 61 GRNPQTGEQIEIPEKTAVVFRPSRTIKEEVRD 92 >gi|20137641|sp|Q92J57|DBH_RICCN RecName: Full=DNA-binding protein HU Length = 99 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 44/97 (45%), Gaps = 9/97 (9%) Query: 5 ITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 + +++ + + + L++ ++ + + + + + + I I+ F +F Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + + +R GRN +T ++KID F+A +K+ Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 97 >gi|333024856|ref|ZP_08452920.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071] gi|332744708|gb|EGJ75149.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071] Length = 112 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 20 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 79 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 80 ARNPQTGEPIQIAAGYSVKVSAGSKLKEA 108 >gi|256830730|ref|YP_003159458.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256579906|gb|ACU91042.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 97 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 54/93 (58%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+T++++V SI ++ +R + V T+ + + ++ + ++ IS F F +K + Sbjct: 3 NNTLTKAEIVDSIYEKSERNRAEVKAQVETMLDIMKEAVKKDHSLLISGFGKFEAYEKDA 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT++ + + R+VVVF+ S L+ + Sbjct: 63 RKGRNPQTSESIILSERKVVVFRISRKLRAELN 95 >gi|294787476|ref|ZP_06752729.1| DNA-binding protein HU [Parascardovia denticolens F0305] gi|315226953|ref|ZP_07868741.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105] gi|294484832|gb|EFG32467.1| DNA-binding protein HU [Parascardovia denticolens F0305] gi|315121085|gb|EFT84217.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105] Length = 92 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ S V + +S GE ++++ + ++ +R GR Sbjct: 4 NKSDLVAKIAQKTSLTKAQSEAAVNAFQEVLVESLKSGEGLRLTGVLSASRVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + + I V +A S+LKK + Sbjct: 64 NPRTGETINIPAGYGVKLQAGSLLKKAVA 92 >gi|238898892|ref|YP_002924574.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466652|gb|ACQ68426.1| integration host factor (IHF), DNA-binding protein, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 107 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFHVKQKGS 61 TIT++D++ +S++FGL K+S + F EI E +K S F F+++ K + Sbjct: 2 TITKADILDDVSEKFGLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKKA 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R GRN +T ++V I RRVV F A LK I + KC+K Sbjct: 62 RPGRNPKTGEDVLIKKRRVVTFHAGLKLKTLIENG--NEKCSK 102 >gi|34580834|ref|ZP_00142314.1| DNA-binding protein HU [Rickettsia sibirica 246] gi|157828089|ref|YP_001494331.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith'] gi|238651025|ref|YP_002916882.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic] gi|28262219|gb|EAA25723.1| DNA-binding protein HU [Rickettsia sibirica 246] gi|157800570|gb|ABV75823.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith'] gi|238625123|gb|ACR47829.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic] Length = 110 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSI---------SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + + + L++ ++ + + + + + + I I+ F + Sbjct: 10 KKMNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGS 69 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + +R GRN +T ++KID F+A +K+ Sbjct: 70 FEIHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 108 >gi|239944579|ref|ZP_04696516.1| putative histone-like DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-binding protein [Streptomyces roseosporus NRRL 11379] gi|291448042|ref|ZP_06587432.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998] gi|291350989|gb|EFE77893.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDVAVKKAPKGS 108 >gi|330837189|ref|YP_004411830.1| histone family protein DNA-binding protein [Spirochaeta coccoides DSM 17374] gi|329749092|gb|AEC02448.1| histone family protein DNA-binding protein [Spirochaeta coccoides DSM 17374] Length = 104 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +T++ +++++ ++ L+R D + F EI + + I++ F TF V+ + R Sbjct: 5 EKLTKAAIIENLHQKLNLNRSDIHMVLDEFFEEIKNGLQEDKIIELRGFGTFEVRTRKGR 64 Query: 63 -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T V +D V +F+ LK + D Sbjct: 65 EKARNPKTGDVVAVDTHGVAIFRPGKELKDYVWD 98 >gi|239930957|ref|ZP_04687910.1| DNA-binding protein HU (hs1) [Streptomyces ghanaensis ATCC 14672] gi|291439334|ref|ZP_06578724.1| HSl protein [Streptomyces ghanaensis ATCC 14672] gi|291342229|gb|EFE69185.1| HSl protein [Streptomyces ghanaensis ATCC 14672] Length = 93 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + + F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTVPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89 >gi|241589902|ref|YP_002979927.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|240868614|gb|ACS66273.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] Length = 94 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DL K+I+ S R++ + D+ G+ ++I F TF ++ +R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T +E+++ V F A S L++ + + Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVNRE 92 >gi|297569210|ref|YP_003690554.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296925125|gb|ADH85935.1| histone family protein DNA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 97 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 1/95 (1%) Query: 1 MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M++ +TR DL K+I+++ G S++ + V +F+ + + + E IK+ F TF+V++K Sbjct: 1 MNRANLTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN +T ++I R ++ F+ S +++RI Sbjct: 61 SPRQGRNPRTGDPMEISKRSMISFRPSKSVRERIN 95 >gi|229496570|ref|ZP_04390284.1| DNA-binding protein HU [Porphyromonas endodontalis ATCC 35406] gi|229316467|gb|EEN82386.1| DNA-binding protein HU [Porphyromonas endodontalis ATCC 35406] Length = 96 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV I+K GL R + R V T + + D +G I + F +F ++++ ++ Sbjct: 1 MTKADLVAQIAKRTGLDRDEVLRTVETFMDVVKDEMAQGNNIYLRGFGSFVIRERAQKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN+ + + I V FK S + + + Sbjct: 61 RNISKKEAIIIPKHNVPSFKPSKVFSEML 89 >gi|308808790|ref|XP_003081705.1| unnamed protein product [Ostreococcus tauri] gi|116060170|emb|CAL56229.1| unnamed protein product [Ostreococcus tauri] Length = 123 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ +++ E G ++ R + F+ I + G+ + IS F TF K + +R G Sbjct: 31 LNKKTLIDAVAAETGETKASVGRVLNACFDVIGATVQSGDKVAISKFGTFARKTRAARDG 90 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +KI F ASS K + Sbjct: 91 RNPMTGAPLKIPATDYPSFSASSTWKDAVAG 121 >gi|15616918|ref|NP_240131.1| integration host factor beta-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681672|ref|YP_002468058.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682227|ref|YP_002468611.1| integration host factor beta-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471361|ref|ZP_05635360.1| integration host factor subunit beta [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132945|sp|P57394|IHFB_BUCAI RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803529|sp|B8D999|IHFB_BUCA5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|254803530|sp|B8D7K1|IHFB_BUCAT RecName: Full=Integration host factor subunit beta; Short=IHF-beta gi|25294346|pir||A84966 integration host factor beta-subunit [imported] - Buchnera sp. (strain APS) gi|10038982|dbj|BAB13017.1| integration host factor beta-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621960|gb|ACL30116.1| integration host factor beta-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624515|gb|ACL30670.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086045|gb|ADP66127.1| integration host factor subunit beta [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086618|gb|ADP66699.1| integration host factor subunit beta [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087201|gb|ADP67281.1| integration host factor subunit beta [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087726|gb|ADP67805.1| integration host factor subunit beta [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 94 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L + I++ + +S K R + + S G+ I+I F +F + + SR+ Sbjct: 1 MIKSELFERIAEQKINISNKMIERAAKEMLEHMIISLANGKRIEIRGFGSFSLHYRSSRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + VK++ + V FK L+ R Sbjct: 61 GRNPKTGKSVKLNEKYVPYFKPGKKLRDRAN 91 >gi|29831670|ref|NP_826304.1| DNA-binding protein HU 1 [Streptomyces avermitilis MA-4680] gi|297200046|ref|ZP_06917443.1| integration host factor, beta subunit [Streptomyces sviceus ATCC 29083] gi|29608786|dbj|BAC72839.1| putative DNA-binding protein Hu 1 [Streptomyces avermitilis MA-4680] gi|197710519|gb|EDY54553.1| integration host factor, beta subunit [Streptomyces sviceus ATCC 29083] Length = 93 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|171909880|ref|ZP_02925350.1| putative integration host factor alpha-subunit [Verrucomicrobium spinosum DSM 4136] Length = 104 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+T+ DLV +S GL++ + + I + +G + + F TF V+ Sbjct: 1 MS-TVTKRDLVVELSNRTGLTQSQAFDLFQQALDLITEELAKGNEVTLRRFGTFEVRVTK 59 Query: 61 SRVGRNL-QTNQEVKIDPRRVVVFKASSILKKRI 93 ++GRN + E++I PR VV FK +K ++ Sbjct: 60 PKIGRNPNKPGSEMQIPPRTVVRFKPGKEMKAQV 93 >gi|186687124|ref|YP_001870267.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] gi|186469427|gb|ACC85226.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] Length = 91 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++ + +++K + ++ + + ++ GE + + F +F +++ R G Sbjct: 1 MNKGELVDAVAAKTNITKKQADEVISAFLSVVTEAVANGEKVTLIGFGSFERRERAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I +V F A K+++ Sbjct: 61 RNPKTQETMTIPATKVPAFSAGKQFKEKVA 90 >gi|257469517|ref|ZP_05633609.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317063761|ref|ZP_07928246.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689437|gb|EFS26272.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + + ++ ++ D+ + I + V GE I F F V + +R Sbjct: 1 MTKKEFIDLYFEKGEFATKIDAEKKAAAFLAVIEEGLVGGEDITFLGFGKFEVADRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E++++ ++VV FKA L +++ Sbjct: 61 CRNPQTGEEMEVEAKKVVKFKAGKGLSEKVNQ 92 >gi|212704733|ref|ZP_03312861.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC 29098] gi|212671860|gb|EEB32343.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC 29098] Length = 95 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 50/94 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT+T++D+V+ I + +R D V L + + + A+ IS F F K Sbjct: 1 MKKTLTKADIVERIYESTDKNRVDVKNVVEKLLEIMKSAIKKDNALLISGFGKFEAYDKA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR GRN QT++ + + PR+VVVF+ S + + Sbjct: 61 SRKGRNPQTDEAITLPPRKVVVFRLSRKFRAELN 94 >gi|220903465|ref|YP_002478777.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867764|gb|ACL48099.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 95 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 52/94 (55%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT+T++D+V++I +E +R D V L + + + A+ IS F F K Sbjct: 1 MKKTLTKADIVEAIYEETDKNRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR GRN +T++ + + PR+V+VF+ S + + Sbjct: 61 SRKGRNPKTDETITLPPRKVMVFRLSRKFRSELN 94 >gi|295836876|ref|ZP_06823809.1| DNA-binding protein HU [Streptomyces sp. SPB74] gi|302521508|ref|ZP_07273850.1| integration host factor, alpha subunit [Streptomyces sp. SPB78] gi|295826251|gb|EFG64756.1| DNA-binding protein HU [Streptomyces sp. SPB74] gi|302430403|gb|EFL02219.1| integration host factor, alpha subunit [Streptomyces sp. SPB78] Length = 93 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + + D +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIAAGYSVKVSAGSKLKEA 89 >gi|15604046|ref|NP_220561.1| DNA-binding protein HU (hupA) [Rickettsia prowazekii str. Madrid E] gi|3860737|emb|CAA14638.1| DNA-BINDING PROTEIN HU (hupA) [Rickettsia prowazekii] gi|292571765|gb|ADE29680.1| DNA-binding protein HU [Rickettsia prowazekii Rp22] Length = 110 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + +++ L++ D+ + + + + + + ++ F + Sbjct: 10 KKMNKTEFIAFMTEHGHNNKHAAHKTLTKADAEKALNLVIESVISAIKSKHNVNLTGFGS 69 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 F + + R GRN +T ++KID F+A LK+ Sbjct: 70 FEIHHRKEREGRNPKTGAKMKIDAYNQPTFRAGRKLKEA 108 >gi|258513051|ref|YP_003189308.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|329113763|ref|ZP_08242536.1| DNA-binding protein HU [Acetobacter pomorum DM001] gi|256634954|dbj|BAI00929.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256638009|dbj|BAI03977.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256641063|dbj|BAI07024.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256644118|dbj|BAI10072.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256647173|dbj|BAI13120.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256650226|dbj|BAI16166.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256653217|dbj|BAI19150.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656270|dbj|BAI22196.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] gi|326696919|gb|EGE48587.1| DNA-binding protein HU [Acetobacter pomorum DM001] Length = 92 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + DL++ I + +KD+ + T+F I ++AV+G+ I+ F F V+Q R G Sbjct: 1 MNSQDLIERIVAATDIQKKDAKTALETVFAAITEAAVKGDDTTIAGFGKFVVRQTAERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QT E+ I R + + + +K + Sbjct: 61 RNPQTGAELVIPASRKLAYTPAKAVKDAL 89 >gi|71909124|ref|YP_286711.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71848745|gb|AAZ48241.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 99 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV+ +KE G+++ + + ++ + + + +GE++ + F TF ++ +R G Sbjct: 1 MNKSELVEVAAKEAGITKAAADKALSAIIGAVVATVTKGESVTLVGFGTFKSAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N +T +KI V F A + K + Sbjct: 61 KNPKTGATLKIPATTVPKFTAGTAFKASV 89 >gi|194291893|ref|YP_002007800.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] gi|193225797|emb|CAQ71743.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Cupriavidus taiwanensis LMG 19424] Length = 93 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +I+ E LS + R + + I + +G+++ + F +F ++ +R G Sbjct: 1 MNKGELVSAIAAEAELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFAAGKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +KI + V F A K + Sbjct: 61 RNPRTGETIKIPAAKTVKFSAGQGFKDAVNK 91 >gi|21223911|ref|NP_629690.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)] gi|256784990|ref|ZP_05523421.1| histone-like DNA binding protein [Streptomyces lividans TK24] gi|289768882|ref|ZP_06528260.1| DNA-binding protein HU 2 [Streptomyces lividans TK24] gi|61222645|sp|P0A3H7|DBH2_STRCO RecName: Full=DNA-binding protein HU 2 gi|61222646|sp|P0A3H8|DBH2_STRLI RecName: Full=DNA-binding protein HU 2 gi|3355704|emb|CAA20004.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)] gi|5926707|dbj|BAA84639.1| histone-like protein [Streptomyces lividans] gi|289699081|gb|EFD66510.1| DNA-binding protein HU 2 [Streptomyces lividans TK24] Length = 218 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + + + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDAVLDALVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDIAVKKAPKGS 108 >gi|300726153|ref|ZP_07059610.1| DNA-binding protein HU [Prevotella bryantii B14] gi|299776623|gb|EFI73176.1| DNA-binding protein HU [Prevotella bryantii B14] Length = 94 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI-KISSFATFHVKQKGSRV 63 + +++L+ ++++ L++ +S++ V + I D+ G+ + I F F VKQ R Sbjct: 1 MNKTELISKVAEQANLTKAESSKLVNAVLGAIADNLCEGDGLLAIPDFGRFQVKQVPERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 G N T +++ I +VFKAS Sbjct: 61 GINPSTKEKIVIPAHDKIVFKAS 83 >gi|218282473|ref|ZP_03488732.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989] gi|218216569|gb|EEC90107.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989] Length = 95 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 49/95 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + + L +++S + +S+KD+ V +FNE+ D+ + I++F F + + Sbjct: 1 MGKYVNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR+G N T + + I ++ F+ S LK + Sbjct: 61 SRMGINPVTKERMMIQATKLPKFRPSQTLKNKCNK 95 >gi|154507606|ref|ZP_02043248.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC 17982] gi|293189276|ref|ZP_06607999.1| DNA-binding protein HU [Actinomyces odontolyticus F0309] gi|153797240|gb|EDN79660.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC 17982] gi|292821739|gb|EFF80675.1| DNA-binding protein HU [Actinomyces odontolyticus F0309] Length = 93 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 48/92 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I++ L++ + + + +S +GEA+K++ + ++ +R Sbjct: 2 SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAVSK 93 >gi|257451958|ref|ZP_05617257.1| histone-like DNA-binding protein [Fusobacterium sp. 3_1_5R] gi|257467237|ref|ZP_05631548.1| histone-like DNA-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918366|ref|ZP_07914606.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|317058507|ref|ZP_07922992.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313684183|gb|EFS21018.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313692241|gb|EFS29076.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] Length = 93 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V +++K+ ++ K++ + V + +S V G +K F ++ K++ +R Sbjct: 1 MTKKEFVAALAKKAEVTGKEADKMVKCFLELVEESLVAGNDVKFIGFGSWETKKREARKL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +E+KI +RVV FK L ++ Sbjct: 61 RNPQTGKEMKIAAKRVVKFKVGKALADKVA 90 >gi|124515197|gb|EAY56708.1| putative histone-like DNA-binding protein [Leptospirillum rubarum] gi|206603673|gb|EDZ40153.1| Putative histone-like DNA-binding protein [Leptospirillum sp. Group II '5-way CG'] Length = 102 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+T+S+L+ ++ + G L++K + V +F+ I D +G A+ I F FH ++ +R Sbjct: 8 TLTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAAR 67 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN T +KI F A K + Sbjct: 68 TGRNPATGAVIKIAATTTPRFAAGKAFKDSVA 99 >gi|315606150|ref|ZP_07881178.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str. F0310] gi|315312108|gb|EFU60197.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str. F0310] Length = 93 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 48/92 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I++ L++ + + + +S +GEA+K++ + ++ +R Sbjct: 2 SVNRTELVAQIAERADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGYGVKLSAGSTLKKAVAK 93 >gi|269977423|ref|ZP_06184395.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1] gi|307700288|ref|ZP_07637328.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16] gi|269934339|gb|EEZ90901.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1] gi|307614499|gb|EFN93728.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16] Length = 91 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV I+K LS+ ++ ++ + + +S +GE +K++ + +R G Sbjct: 1 MNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T +E+KI V A S LKK + Sbjct: 61 RNPRTGEEIKIPAGFGVKISAGSTLKKAV 89 >gi|320353542|ref|YP_004194881.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320122044|gb|ADW17590.1| histone family protein DNA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 96 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 57/93 (61%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +TR +L S++++ G+S++++ V T+F + + V GE+IK+ F T V+ K R Sbjct: 4 KNVTRKELAISVNEKLGVSQRNAAEIVDTVFAIMKTTMVAGESIKLVQFGTLTVRDKSPR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I R++V F+ S L++R+ Sbjct: 64 RGRNPRTGESMTITKRQMVSFRPSKRLRERLNK 96 >gi|153878657|ref|ZP_02004647.1| Integration host factor beta-subunit [Beggiatoa sp. PS] gi|152064879|gb|EDN65353.1| Integration host factor beta-subunit [Beggiatoa sp. PS] Length = 73 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + T+ ++ S GE I+I F +F + + R GRN +T + V + + V FK Sbjct: 1 MKTILEQMAQSLENGERIEIRGFGSFSLHYRPPRKGRNPKTGEPVDLPEKFVPHFKPGKE 60 Query: 89 LKKRIM 94 L+ R+ Sbjct: 61 LRDRVN 66 >gi|154247521|ref|YP_001418479.1| histone family protein DNA-binding protein [Xanthobacter autotrophicus Py2] gi|154161606|gb|ABS68822.1| histone family protein DNA-binding protein [Xanthobacter autotrophicus Py2] Length = 92 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 47/90 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ ++++E L++ + V F+ I + GE +K+ F +F V + +R GR Sbjct: 3 TKNELIAAVAEEAKLTKTAAAAAVDATFDIIAKALQEGEEVKLIGFGSFSVVTRAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + VKI + F LK+ + Sbjct: 63 NPRTGKPVKIKASKAPKFTPGKGLKEAVNG 92 >gi|290957139|ref|YP_003488321.1| histone-like DNA binding protein [Streptomyces scabiei 87.22] gi|260646665|emb|CBG69762.1| putative histone-like DNA binding protein [Streptomyces scabiei 87.22] Length = 217 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|27380036|ref|NP_771565.1| DNA-binding protein HU [Bradyrhizobium japonicum USDA 110] gi|27353190|dbj|BAC50190.1| hup [Bradyrhizobium japonicum USDA 110] Length = 99 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT L I++ LS+K + +T + I +G+ ++I V+++ +R Sbjct: 10 TITLKHLAADIAESQDLSKKHAEAVLTDMVELIAKHLKKGDRVRIVGLGILQVRKRAART 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + + I + V F+ LK+ I Sbjct: 70 GRNPATGEPIHIKASKKVAFRPVKELKEAI 99 >gi|225850916|ref|YP_002731150.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] gi|225645576|gb|ACO03762.1| histone family protein DNA-binding protein [Persephonella marina EX-H1] Length = 96 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 5 ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59 +T++++V+ I +K +S+KD + V +F +I V GE ++IS F TF VK++ Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++GRN +T +E I R + FKA LK+ + Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESLSK 96 >gi|330994478|ref|ZP_08318403.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] gi|329758478|gb|EGG74997.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] Length = 536 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 38/80 (47%) Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76 E LS D+ + + + + +A+RGE + + +F F VK +R GRN T ++I Sbjct: 456 EADLSNADTRKVIDAVVEAMTQAAIRGEEVTLPNFGKFKVKDVPAREGRNPATGATIQIA 515 Query: 77 PRRVVVFKASSILKKRIMDD 96 R + F + LK + Sbjct: 516 ASRKLGFTPAKALKDALNGG 535 >gi|115524524|ref|YP_781435.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] gi|115518471|gb|ABJ06455.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] Length = 103 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 IT L +++++ +S+K S ++ L I +GE I+I V+++ +R G Sbjct: 15 ITLKHLAAALAEDHEMSKKKSEEILSDLVGAITKHLKKGERIRIVGLGILQVRKRAARTG 74 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T + ++I + V F+A+ LK+ + Sbjct: 75 RNPATGEPIQIKASKKVAFRAAKELKEAV 103 >gi|218778638|ref|YP_002429956.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218760022|gb|ACL02488.1| histone family protein DNA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 90 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 +T+ +L++ ++K+ +++ + + + + + + + + + F TF ++ +R Sbjct: 1 MTKPELIEKMAKDAKITKAQAAAALKSFTEGVKMALKKKDGKLTLVGFGTFSKVRRKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT + +KI V FK LK+ I Sbjct: 61 GRNPQTGEPIKIKASNAVKFKPGKALKESI 90 >gi|253584037|ref|ZP_04861235.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] gi|251834609|gb|EES63172.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725] Length = 91 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D K++ ++ +S+ +S R V + EI + GE + + F V QK R+ Sbjct: 1 MTKKDFAKALFEKGIFVSKAESERKVEAILTEIEEVLKSGEELNFIGWGKFEVVQKAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+KI+ ++ V FKA L +I Sbjct: 61 GRNPKTGEEIKIEAKKSVKFKAGKTLVDKIN 91 >gi|152966755|ref|YP_001362539.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151361272|gb|ABS04275.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 187 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK++T V + I + +G+ I IS F TF + + +R G Sbjct: 1 MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN +T + VKI V F+ + K+ + D R + +G+ Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSDTKALRAYQGELKAKTTGT 108 >gi|295394908|ref|ZP_06805121.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030] gi|294972241|gb|EFG48103.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030] Length = 94 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV ++++ GL++K + + +F+ D +GE + + + + ++ Sbjct: 1 MAK--NRSELVAEVAEKTGLTQKQVSDVLDGVFDSFADVVSKGEKLTVPGWLSVERTERA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 +R GRN QT +E++I V A S LK Sbjct: 59 ARKGRNPQTGEEIQIAAGYSVKLSAGSKLKAA 90 >gi|14195649|sp|Q9ZDZ2|DBH_RICPR RecName: Full=DNA-binding protein HU Length = 99 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 5 ITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 + +++ + +++ L++ D+ + + + + + + ++ F +F Sbjct: 1 MNKTEFIAFMTEHGHNNKHAAHKTLTKADAEKALNLVIESVISAIKSKHNVNLTGFGSFE 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + + R GRN +T ++KID F+A LK+ Sbjct: 61 IHHRKEREGRNPKTGAKMKIDAYNQPTFRAGRKLKEA 97 >gi|282860074|ref|ZP_06269155.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282587162|gb|EFB92386.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 92 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ E G+S+KD + V + + I DS + + E + + F +F VK + + Sbjct: 1 MTKADIINEIATETGISKKDVSAVVESFMDAIKDSLLDKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88 >gi|254420538|ref|ZP_05034262.1| DNA-binding protein HU [Brevundimonas sp. BAL3] gi|196186715|gb|EDX81691.1| DNA-binding protein HU [Brevundimonas sp. BAL3] Length = 92 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++L+ +++K+ G+S+ D+ + +T + I S G ++IS+ F + R GR Sbjct: 3 TQAELIAAVAKDAGVSQADAGKVLTAIVENIHASLKAGGDVRISNLGVFDTAARAEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + V F+ S LK + Sbjct: 63 NPATGATIKIAASKAVRFRVSKPLKDAVNG 92 >gi|281357086|ref|ZP_06243576.1| histone family protein DNA-binding protein [Victivallis vadensis ATCC BAA-548] gi|281316644|gb|EFB00668.1| histone family protein DNA-binding protein [Victivallis vadensis ATCC BAA-548] Length = 99 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DLV I++E G + D V + I + G I++ +F F +K + SR G Sbjct: 1 MTKRDLVVKIARETGFIQNDVAEVVQKTLDYIAQDLIEGHTIELRNFGVFEIKVRKSRKG 60 Query: 65 RNL-QTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN Q EV I R VV F+A LK+ + Sbjct: 61 RNPNQPKNEVIIPERAVVKFRAGKELKEAVEQ 92 >gi|34540963|ref|NP_905442.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188995257|ref|YP_001929509.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] gi|34397278|gb|AAQ66341.1| DNA-binding protein HU [Porphyromonas gingivalis W83] gi|188594937|dbj|BAG33912.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277] Length = 92 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +I+K G+ ++ + + V + + I DS G+ + + F +F VK++ + Sbjct: 1 MTKADVVNAIAKSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ + I R + FK S I ++ D Sbjct: 61 RNISKQTTIIIPKRNIPAFKPSKIFMSQMKQD 92 >gi|152990572|ref|YP_001356294.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2] gi|151422433|dbj|BAF69937.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2] Length = 91 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ V+ ++++ GLS+KD+ + + I D+ G+ + F TF Q+ +R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + T++ VK+ RVV FK LK+ + Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAVAG 91 >gi|329960404|ref|ZP_08298814.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328532764|gb|EGF59549.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 93 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DLV+ ISK+ G+ R + V + S G+ + + F +F VK++ + G Sbjct: 1 MTKADLVQEISKQTGIDRDEVLMIVEAFMETVKCSLSMGKEVYLRGFGSFIVKRRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK S +I + Sbjct: 61 RNIGQNTTLIIPAHDIPAFKPSKEFSNKIKKE 92 >gi|118580311|ref|YP_901561.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] gi|118503021|gb|ABK99503.1| histone family protein DNA-binding protein [Pelobacter propionicus DSM 2379] Length = 126 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV I++ L++ + + + + G+ + I F F + +R G Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 RN QT + ++I + F LK ++ + + S Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKDLTAKPVKSKSAKPTKLES 105 >gi|198276416|ref|ZP_03208947.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM 17135] gi|313146782|ref|ZP_07808975.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|198270858|gb|EDY95128.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM 17135] gi|313135549|gb|EFR52909.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 93 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I++E G+ + +T V + +S + G + + F +F +KQ+ + Sbjct: 1 MTKADIIARIAQETGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFIIKQRAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I V FK + + + Sbjct: 61 RNISKNTTIVIPAHSVPAFKPAKTFLDAVKEG 92 >gi|114777026|ref|ZP_01452046.1| histone-like protein [Mariprofundus ferrooxydans PV-1] gi|114552547|gb|EAU55007.1| histone-like protein [Mariprofundus ferrooxydans PV-1] Length = 90 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ + V + + I + G+A+ + F TF V ++ +R Sbjct: 1 MNKAELINHVAAAADLSKAAAGEAVEAVLSGITGTLANGDAVSLVGFGTFSVAERAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + +++ + FKA LK + Sbjct: 61 RNPRTGEAIEVGASKAPKFKAGKALKDAVK 90 >gi|328953678|ref|YP_004371012.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328454002|gb|AEB09831.1| histone family protein DNA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 95 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 55/92 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ +I+ + GLS++++ V + + I ++ + E + IS F F V+ K R Sbjct: 2 ALTKEKVINAINLKLGLSKQEARSAVERVLHLIKEALAQEEDVLISGFGKFTVRSKNPRR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++ + R+VVVFK S +L+ RI Sbjct: 62 GRNPQTKEDLILRARKVVVFKTSGVLRHRINQ 93 >gi|251772900|gb|EES53459.1| putative integration host factor, beta-subunit [Leptospirillum ferrodiazotrophum] Length = 91 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L+ ++++F G+ R+D+ + + + G+ +++ F ++ + R Sbjct: 1 MTKSELIIRLARQFPGIRREDAREMLDLFLEAMKEGLRSGDTVELRDFGVLRIRSRSQRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T ++V ++ R+VV FK S LK R++ Sbjct: 61 ARNPKTGEKVTVEARKVVYFKQSRTLKGRLL 91 >gi|167646806|ref|YP_001684469.1| histone family protein DNA-binding protein [Caulobacter sp. K31] gi|167349236|gb|ABZ71971.1| histone family protein DNA-binding protein [Caulobacter sp. K31] Length = 92 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 42/90 (46%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +I+++ G+++ + + + + S GE +++ F TF + + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIDAVTTSLKAGEDVRLVGFGTFKAVARAAGTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + V + F+ LK + Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKTTLNG 92 >gi|297191835|ref|ZP_06909233.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC 25486] gi|197722028|gb|EDY65936.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 216 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN QT + V++ V F+A K + + K + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGE 99 >gi|162148654|ref|YP_001603115.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] gi|161787231|emb|CAP56824.1| putative DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5] Length = 91 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 39/88 (44%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 ++LV I+ LS+ D+ + V L + D+A G+ + I F K +R GRN Sbjct: 4 TELVDHIASAADLSKADARKAVDALVAAVTDAAKAGDEVTIPDLGKFKTKDVPAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T + I R + F + LK + Sbjct: 64 ATGATITIAASRKLTFTPAKALKDSLNG 91 >gi|229073027|ref|ZP_04206221.1| DNA-binding protein HU 1 [Bacillus cereus F65185] gi|228710145|gb|EEL62125.1| DNA-binding protein HU 1 [Bacillus cereus F65185] Length = 93 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 52/92 (56%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + I +++L K ++++ L +KD T+ + I ++ GE ++I F TF V+++ +R Sbjct: 2 QKINKTELTKVVAEKTELIQKDPVAATQTVLDTITNALANGEKVQILGFGTFEVREQSAR 61 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N QT +E++I + FKA LK+ + Sbjct: 62 TGHNPQTGEEMQIAASKASAFKAGKELKEAVK 93 >gi|71066048|ref|YP_264775.1| putative histone-like DNA-binding protein [Psychrobacter arcticus 273-4] gi|93006496|ref|YP_580933.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] gi|71039033|gb|AAZ19341.1| putative histone-like bacterial DNA-binding protein [Psychrobacter arcticus 273-4] gi|92394174|gb|ABE75449.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis K5] Length = 82 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 38/82 (46%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++ V + N + + +++ F +F + + +R+GRN +T + V + + Sbjct: 1 MTDTVVDDAVREILNLMTHTLANDGRVEVRGFGSFCLHHRRARMGRNPKTGESVPVPAKA 60 Query: 80 VVVFKASSILKKRIMDDMRGRK 101 + FK L++ + + + G + Sbjct: 61 IPHFKPGKALREAVNEKVAGGQ 82 >gi|319794282|ref|YP_004155922.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] gi|315596745|gb|ADU37811.1| histone family protein DNA-binding protein [Variovorax paradoxus EPS] Length = 116 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+ I+ +S+ ++ R + T+ + I + +G+ ++I F TF + +R G Sbjct: 1 MNRIELVEKIATTHTVSKAEAARILETVTSAIVAAVKKGDPVQIVGFGTFKQVARAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N Q +KI ++V F + K + Sbjct: 61 FNPQAGTAIKIAAQKVPKFVPGAAFKAAV 89 >gi|257469647|ref|ZP_05633739.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317063883|ref|ZP_07928368.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|313689559|gb|EFS26394.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] Length = 91 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D K++ ++ +S+ +S R V + EI + G+ + + F V QK R+ Sbjct: 1 MTKKDFAKALFEKGIFVSKAESERKVDAILTEIEEVLKSGDELNFIGWGKFEVVQKAERM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+KI+ ++ V FKA L ++ Sbjct: 61 GRNPKTGEEIKIEAKKTVKFKAGKTLTDKMN 91 >gi|320537407|ref|ZP_08037357.1| putative integration host factor subunit alpha [Treponema phagedenis F0421] gi|320145733|gb|EFW37399.1| putative integration host factor subunit alpha [Treponema phagedenis F0421] Length = 103 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 48/90 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 TR+ L I ++FG + + V +L E+ + RGE I++ +F F ++ + S +GR Sbjct: 7 TRASLTDLIYRKFGYDYRITATIVDSLIEEMASALKRGETIELRNFGVFELQHRKSSIGR 66 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N+ VKI R VV F+ L++ + D Sbjct: 67 NISAGTAVKIPERYVVAFRPGKNLREAVKD 96 >gi|319941885|ref|ZP_08016206.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319804538|gb|EFW01408.1| histone family protein DNA-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 93 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV ++ S+ + R + + EI + GE++ + F TF R G Sbjct: 1 MNRLELVDRVAARNTASKAEVDRIIVSALEEIISAVRCGESVTLIGFGTFKAVDCAPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + ++I + F + K+ I + Sbjct: 61 RNPSTGESIRIPGTKKPKFVPGTSFKELINE 91 >gi|294791461|ref|ZP_06756618.1| DNA-binding protein HU [Scardovia inopinata F0304] gi|294457932|gb|EFG26286.1| DNA-binding protein HU [Scardovia inopinata F0304] Length = 92 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDLV I+++ L++ S + + +S GE ++++ + ++ +R GR Sbjct: 4 NKSDLVAKIAQKTSLTKAQSEAAINAFQEVLVESLESGEGLRLTGVLSASRVKRAARTGR 63 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + + I V +A S+LKK + Sbjct: 64 NPRTGEAINIPAGYGVKLQAGSLLKKAVA 92 >gi|90423898|ref|YP_532268.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB18] gi|90105912|gb|ABD87949.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB18] Length = 104 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 45/84 (53%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L ++++E LS+K + + L I +GE I+I V+++ +R+GRN T Sbjct: 21 LAAALAEEHELSKKQTETILGDLVGRITKHLKKGERIRIVGLGILQVRKRAARMGRNPAT 80 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 + ++I + V F+A+ LK+ + Sbjct: 81 GEAIQIKASKKVAFRAAKELKEAV 104 >gi|258406356|ref|YP_003199098.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798583|gb|ACV69520.1| histone family protein DNA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 98 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 48/93 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+T++D+V +I ++ SR + V + + + DS + A+ IS F F K Sbjct: 3 GKTLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEP 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT + + + R VVVF+ S + + Sbjct: 63 RKGRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95 >gi|262203103|ref|YP_003274311.1| histone family protein DNA-binding protein [Gordonia bronchialis DSM 43247] gi|262086450|gb|ACY22418.1| histone family protein DNA-binding protein [Gordonia bronchialis DSM 43247] Length = 193 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++K+ RK +T V + + I + +GE++ I+ F F +++ RV Sbjct: 1 MNKAELIDELTKKLDADRKTATEAVELIVDTIVRAVNKGESVTITGFGVFEKRRRAPRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ V F+ + K + + Sbjct: 61 RNPRTGETVKVRATSVPAFRPGAQFKAVVAGKQK 94 >gi|56416375|ref|YP_153449.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries] gi|222474746|ref|YP_002563161.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Florida] gi|254994605|ref|ZP_05276795.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Mississippi] gi|255002715|ref|ZP_05277679.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Puerto Rico] gi|255003844|ref|ZP_05278645.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Virginia] gi|56387607|gb|AAV86194.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries] gi|222418882|gb|ACM48905.1| presumptive integration host factor alpha-subunit (ihfA) [Anaplasma marginale str. Florida] Length = 98 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 58/96 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+TR+ L I++E G+SR+D+ V + +E+ S VRG +KISSF TF V +K Sbjct: 1 MAQTLTRARLADEINREIGISREDALVLVGEILDEMVSSLVRGGLLKISSFGTFKVIRKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R+GRN +T ++ + V F S +K+ I + Sbjct: 61 ERIGRNPKTLEQFIVKEHNTVTFCPSVTMKRLINGE 96 >gi|254418548|ref|ZP_05032272.1| DNA-binding protein HU [Brevundimonas sp. BAL3] gi|196184725|gb|EDX79701.1| DNA-binding protein HU [Brevundimonas sp. BAL3] Length = 91 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ ++ +SR + + + + ++ +G +K+ F +F + + V Sbjct: 1 MTKAELIGRMATAANISRDQAKTALEAFTDGVVEALTQGRDVKLIGFGSFTPVDRKAGVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT Q V R F+ LK + Sbjct: 61 RNPQTGQAVARPASRTARFRPGEGLKSALNG 91 >gi|75676083|ref|YP_318504.1| histone-like DNA-binding protein [Nitrobacter winogradskyi Nb-255] gi|74420953|gb|ABA05152.1| Histone-like DNA-binding protein [Nitrobacter winogradskyi Nb-255] Length = 99 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L +++++ LS+K + ++ + I +G+ I+I V+++ +R Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +E++I + V F+A+ LK+ I Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99 >gi|152965970|ref|YP_001361754.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151360487|gb|ABS03490.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 188 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK++T V + I + +G+ I IS F TF + + +R G Sbjct: 1 MNKTEMVDALETRLG-GRKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90 >gi|297156917|gb|ADI06629.1| putative histone-like DNA binding protein [Streptomyces bingchenggensis BCW-1] Length = 189 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + + + V GE + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAAEAVDAVLDAMVRAVVSGERVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|224369803|ref|YP_002603967.1| IhfA [Desulfobacterium autotrophicum HRM2] gi|223692520|gb|ACN15803.1| IhfA [Desulfobacterium autotrophicum HRM2] Length = 108 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 49/95 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + K +SR S + I ++ +GE + IS F F V +K +R Sbjct: 2 ALTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARK 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN T++E+ + RRV+ FK S L+ I + Sbjct: 62 GRNPATSEEMILPARRVITFKCSGKLRNLINTSEQ 96 >gi|308178354|ref|YP_003917760.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] gi|308178355|ref|YP_003917761.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] gi|307745817|emb|CBT76789.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] gi|307745818|emb|CBT76790.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117] Length = 94 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV +++ + S+ + +F D +GE + I + + +R Sbjct: 2 AMNRSELVAAVAAKTENSQVAVNGVLDAVFEVFVDQISKGEKVSIPGWLAVERTDRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT + ++I V A S LK + Sbjct: 62 GRNPQTGEAIQIPAGHSVKLTAGSKLKAAVAK 93 >gi|282880537|ref|ZP_06289244.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] gi|281305640|gb|EFA97693.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] Length = 90 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ G+S+ + + + + I ++ V+GE +++ F TF V ++ +R G Sbjct: 1 MNKTELIDRIAEAAGISKIAAKKALDGTTDAIKEALVKGEKVQLIGFGTFSVSERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +++KI+ ++V FKA + L + Sbjct: 61 INPSTKEKIKIEAKKVAKFKAGAELADALK 90 >gi|39936018|ref|NP_948294.1| DNA-binding protein HU-alpha [Rhodopseudomonas palustris CGA009] gi|192291674|ref|YP_001992279.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris TIE-1] gi|316933828|ref|YP_004108810.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris DX-1] gi|39649872|emb|CAE28394.1| possible DNA-binding protein hu-alpha (NS2) (HU-2) [Rhodopseudomonas palustris CGA009] gi|192285423|gb|ACF01804.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris TIE-1] gi|315601542|gb|ADU44077.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris DX-1] Length = 103 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + + + I +GE I+I V+++ +R+ Sbjct: 14 TVTLKHLAAALAEEHELSKKQTEAILGDMVTRITKHLKKGERIRIVGLGILQVRKRAARM 73 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T ++++I + V F+A+ LK+ I Sbjct: 74 GRNPATGEQIQIKASKKVAFRAAKELKEAI 103 >gi|255690691|ref|ZP_05414366.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|260623721|gb|EEX46592.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] Length = 93 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ++++ G+ + + V + DS + G + + F +F VKQ+ +V Sbjct: 1 MTKADIVARVAQQTGVEKAVAMTVVEAFMETVKDSMIAGNDVFLRGFGSFVVKQRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK + + + Sbjct: 61 RNISKNTTIVIPAHSIPAFKPAKTFLDAVKEG 92 >gi|92117746|ref|YP_577475.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14] gi|91800640|gb|ABE63015.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14] Length = 99 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L +++++ LS+K + ++ + I +GE I+I V+++ +R Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGERIRIVGLGILQVRKRAARK 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T +E++I + V F+A+ LK+ I Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99 >gi|88801872|ref|ZP_01117400.1| DNA-binding protein HU [Polaribacter irgensii 23-P] gi|88782530|gb|EAR13707.1| DNA-binding protein HU [Polaribacter irgensii 23-P] Length = 96 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS + G+ + D V E+ + G+ + + F +F +K + + G Sbjct: 1 MTKADIVSKISDKSGIEKTDVLATVEAFMTEVKGALENGDNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 RN+ N +KI + FK + + + + + Sbjct: 61 RNISKNTTIKIPSHNIPAFKPAKTFTEGVKSKVAVK 96 >gi|145351643|ref|XP_001420178.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580411|gb|ABO98471.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 115 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ ++KE G ++ R + + I + G+ + +S F TF KQ+ +R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +KI F ASS K + Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVKG 113 >gi|186683386|ref|YP_001866582.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] gi|186465838|gb|ACC81639.1| histone family protein DNA-binding protein [Nostoc punctiforme PCC 73102] Length = 91 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV +++ + +++K + ++ + + ++ GE + + F +F +++ R G Sbjct: 1 MNKGELVDAVATKTNITKKQADEVISAFLSVVTEAVANGEKVTLIGFGSFERRERAEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I R+ F A K+++ Sbjct: 61 RNPKTQETMTIPATRIPAFSAGKQFKEKVA 90 >gi|228469635|ref|ZP_04054615.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] gi|228308828|gb|EEK17529.1| DNA-binding protein HU [Porphyromonas uenonis 60-3] Length = 90 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++VKSI+ G+ R++ + V + + ++ +G+ + + F +F VK++ + Sbjct: 1 MTKAEVVKSIADTTGVDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ + + R+V FK S Sbjct: 61 RNISKQTTIIVPARKVPTFKPSKAF 85 >gi|308272437|emb|CBX29041.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.] Length = 90 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T+++LV +I+ + +++ + + + + + + + + F TF ++ +R Sbjct: 1 MTKAELVDAIAADAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRVARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN QT E+KI R VV KA LK+ + Sbjct: 61 GRNPQTGAEIKIKARNVVKIKAGKKLKEAV 90 >gi|29829226|ref|NP_823860.1| histone-like DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29606332|dbj|BAC70395.1| putative histone-like DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 217 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|224170258|ref|XP_002192729.1| PREDICTED: similar to DNA-binding protein hu homolog, partial [Taeniopygia guttata] Length = 90 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I+K G+ + V L I DS GE + + F +F VK++ + Sbjct: 1 MTKAEIVTEIAKTTGIEKASVLAVVEGLMTSIKDSLAHGENVYLRGFGSFIVKERKEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I + FK ++ KK + Sbjct: 61 RNISKNTTIIIPAHNIPAFKPAAEFKKVVA 90 >gi|225850239|ref|YP_002730473.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] gi|225645148|gb|ACO03334.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] Length = 95 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +SDL+ + + F L +KD + F + D+ +G+ ++I +F VK K SR Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T V++ +RVV FK +LKK++ Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >gi|34497618|ref|NP_901833.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC 12472] gi|34103474|gb|AAQ59836.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC 12472] Length = 90 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+K ++ ++ K + + L + D+ G + IS F Q+ ++ G Sbjct: 1 MTKQDLIKHLAAHADVTNKQAESVLNALTTAVLDTVRAGGELAISDLGKFGTTQRAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T + ++I +R F + LK Sbjct: 61 RNPKTGETIQIAAKRAPKFSPAKALKDA 88 >gi|325680359|ref|ZP_08159917.1| DNA-binding protein HU [Ruminococcus albus 8] gi|324107952|gb|EGC02210.1| DNA-binding protein HU [Ruminococcus albus 8] Length = 110 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + + V ++S++ L++K T V ++ + I ++ G+++ F TF K + +R Sbjct: 1 MNKPEFVNAVSEKNPSLTKKTVTEVVDSVISTIQETVAAGDSVSFVGFGTFSSKVRAARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T +++ I+ + V FKA K + + Sbjct: 61 SINPTTKEKIHIEEKTVPTFKAGKAFKDAVAEA 93 >gi|332188086|ref|ZP_08389817.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] gi|332011934|gb|EGI54008.1| bacterial DNA-binding family protein [Sphingomonas sp. S17] Length = 95 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T SDL + +S GL++ D+ + + + I + GE + ++ F F +K R GR Sbjct: 5 TTSDLAEQLSNTHGLAKADARKVIDAILANITAAVATGEEVSLNGFGKFKLKDTPERQGR 64 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + I R + F + ++ R+ Sbjct: 65 NPSTGEAITIAASRKLTFAPAKAVRDRMNG 94 >gi|126641618|ref|YP_001084602.1| integration host factor beta subunit [Acinetobacter baumannii ATCC 17978] Length = 90 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 10 LVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +++ I+ K L+ V + +++ ++ I+I F +F + + RVGRN + Sbjct: 1 MIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPK 60 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 T + V + + V FK L+ + + + Sbjct: 61 TGKSVDVAAKAVPHFKPGKALRDAVNESGK 90 >gi|304415444|ref|ZP_07396093.1| integration host factor (IHF) DNA-binding protein alpha subunit [Candidatus Regiella insecticola LSR1] gi|304282708|gb|EFL91222.1| integration host factor (IHF) DNA-binding protein alpha subunit [Candidatus Regiella insecticola LSR1] Length = 97 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 52/92 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ ++++++ G+ + + + V + F+EIC +K+S F F V+ K R Sbjct: 2 ALTKDNIAENLTEKLGIDKPVAKQLVESFFDEICLILKEERELKVSKFGNFVVRDKPQRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + + I R VV FK+ LKK + + Sbjct: 62 GRNPKTGEGIPISARSVVTFKSGQRLKKEVEN 93 >gi|224369016|ref|YP_002603180.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum HRM2] gi|223691733|gb|ACN15016.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum HRM2] Length = 76 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 41/74 (55%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++R+ + V F+ + D+ G+ ++I +FHVK S +GRN +T + V I ++ Sbjct: 1 MTREGAAEVVEIFFDSLIDALANGDRVEIRGLCSFHVKDYKSYIGRNPKTGERVLIPGKK 60 Query: 80 VVVFKASSILKKRI 93 + FKA LK+ + Sbjct: 61 LPFFKAGKELKEGV 74 >gi|301167343|emb|CBW26925.1| DNA-binding protein HU-beta [Bacteriovorax marinus SJ] Length = 92 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 5 ITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L+++I K L ++KD+ F+ T + I + +GE + + F +F ++ + Sbjct: 1 MNKKELLETILKNKELNHMTKKDAELFLNTTIDTIKKTVKKGEDVSLIGFGSFSKVRRAA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 R G N T +++KI + + FK K Sbjct: 61 RAGVNPATGEKIKIKAKNLPKFKPGKAWKD 90 >gi|91201933|emb|CAJ74993.1| strongly similar to DNA binding protein HU [Candidatus Kuenenia stuttgartiensis] Length = 103 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E +S+ + V + N I + +++ F TF VK++ +R G Sbjct: 1 MNKQELVEYVANECSVSKTCGEKAVNAVLNGIKQGVKKSNEVRLIGFGTFSVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN QT + I + V F KK + Sbjct: 61 RNPQTGAVINIKASKTVKFSVGQDFKKVVAKG 92 >gi|218666994|ref|YP_002426010.1| integration host factor, alpha subunit, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519207|gb|ACK79793.1| integration host factor, alpha subunit, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 107 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+ + + G + + +FV F + + + +K+S F F V+ K SR Sbjct: 2 TITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T Q +I RRVV F AS++L+ + Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAK 90 >gi|114562616|ref|YP_750129.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] gi|114333909|gb|ABI71291.1| histone family protein DNA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 91 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 42/90 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L ++++ + + + + + + + I GE I I F TF ++ +VG Sbjct: 1 MNKKQLAQTMASKMDIPQVQAKQQLEQILAVIHQGLAEGEKIYIPQFGTFELRFYLPKVG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + ++ID FK S LK I Sbjct: 61 RNPQTGEAIEIDGFNQPSFKVSPALKALIN 90 >gi|255322354|ref|ZP_05363500.1| DNA-binding protein HU 1 [Campylobacter showae RM3277] gi|255300727|gb|EET79998.1| DNA-binding protein HU 1 [Campylobacter showae RM3277] Length = 100 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 44/87 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D +++++ + GLS+KDS + V I + G++I F TF ++ +R Sbjct: 1 MKKADFIQAVADKAGLSKKDSLKVVDAALETIEEVLKNGDSISFIGFGTFATAERAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 R T + + + + V FK LK+ Sbjct: 61 RVPGTTKVIDVPASKAVKFKVGKKLKE 87 >gi|148240879|ref|YP_001220380.1| histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1] gi|146411255|gb|ABQ39708.1| Histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1] Length = 130 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Query: 2 SKTITRS-DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ +T + ++ + I+ E L++ + V ++F I D+AV G + F F VK Sbjct: 27 ARPMTTANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSP 86 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +R GRN T + I R + F + +K + Sbjct: 87 AREGRNPSTGATIAIAASRKLTFTPAKAIKDSLNGGT 123 >gi|288926402|ref|ZP_06420324.1| DNA-binding protein HU [Prevotella buccae D17] gi|315608690|ref|ZP_07883668.1| DNA-binding protein HU [Prevotella buccae ATCC 33574] gi|288336855|gb|EFC75219.1| DNA-binding protein HU [Prevotella buccae D17] gi|315249540|gb|EFU29551.1| DNA-binding protein HU [Prevotella buccae ATCC 33574] Length = 92 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ ++ GLS+++ T V + + ++ E++ + F +F +K + ++ Sbjct: 1 MTKAEIISEVAMATGLSKREVTAVVEAFMESVKNHLLKKESVFLRGFGSFIIKHRAAKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK + L +++ + Sbjct: 61 RNISKNTTITIAAHDLPSFKPAKSLVEQMRGE 92 >gi|333030022|ref|ZP_08458083.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] gi|332740619|gb|EGJ71101.1| histone family protein DNA-binding protein [Bacteroides coprosuis DSM 18011] Length = 94 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ + + + + + DS V E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKVTALNTIEAFMDVVKDSLVNDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I + FK S + + + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPSKTFTEAVKKHNK 94 >gi|256419984|ref|YP_003120637.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] gi|256034892|gb|ACU58436.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] Length = 95 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +I+++ G+ + D + +F E+ ++ GE I I F +F K++ +++G Sbjct: 1 MRKADLINNIAEKTGIPKVDVLVTLEAMFKEVKEALANGEHIYIRGFGSFITKKRAAKIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN++ N V+I + FK S + Sbjct: 61 RNIKKNVAVEIPEHFIPAFKPSKEFVAEVKK 91 >gi|170745590|ref|YP_001776812.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170752147|ref|YP_001783293.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170659244|gb|ACB28296.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|170659274|gb|ACB28325.1| histone family protein DNA-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 108 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS+LV I+ + L +D V T+ + + VRG+ I++ F TF V+ +R+ Sbjct: 1 MIRSELVARIAAKNPHLYARDVEAIVATILKTMTTALVRGDRIELREFGTFTVRHHRARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN ++ V + + V FK S +++ + + + + + +PS Sbjct: 61 ARNPRSQAVVTVPAKGRVAFKPSKAMRELL----QAKPLSTEHSPAPS 104 >gi|254245990|ref|ZP_04939311.1| Integration host factor, beta subunit [Burkholderia cenocepacia PC184] gi|124870766|gb|EAY62482.1| Integration host factor, beta subunit [Burkholderia cenocepacia PC184] Length = 82 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + T+ + + D+ +G I+I F +F + ++ +RVGRN ++ ++V++ + V FK Sbjct: 1 MKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHFKPGKE 60 Query: 89 LKKRIMDDMRGRKCNKDDV 107 L++R+ D G DD Sbjct: 61 LRERV-DGRAGEPLKADDP 78 >gi|226941099|ref|YP_002796173.1| HupB2 [Laribacter hongkongensis HLHK9] gi|226716026|gb|ACO75164.1| HupB2 [Laribacter hongkongensis HLHK9] Length = 90 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L++ +++ + + ++ V L I + G I ++ F ++++ +R+G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V I RR +VF + LK + Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >gi|260654666|ref|ZP_05860156.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1] gi|260630682|gb|EEX48876.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1] Length = 131 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ + + L R D+ V + I + +G +++ F TF V+Q+ +R G Sbjct: 21 VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80 Query: 65 RNLQ-TNQEVKIDPRRVVVFKASSILKKRI 93 RN Q + V I ++V VFKA +L+ + Sbjct: 81 RNPQDPTKTVHIPAKKVPVFKAGKLLRSAV 110 >gi|255530044|ref|YP_003090416.1| histone family protein DNA-binding protein [Pedobacter heparinus DSM 2366] gi|255343028|gb|ACU02354.1| histone family protein DNA-binding protein [Pedobacter heparinus DSM 2366] Length = 100 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS + G+ + D V F I +S + GE + + F +F VK++ + Sbjct: 1 MTKADIISEISTKTGIEKVDVQETVEAFFKVIKNSMIGGENVYVRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I V FK + + ++ ++ + Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKVFVDKVKNNSK 94 >gi|303237141|ref|ZP_07323711.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] gi|302482528|gb|EFL45553.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] Length = 92 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+S+KD + V + I DS E + + F +F VK + + Sbjct: 1 MTKADIINEIASSTGISKKDVSAVVESFMEAIKDSLLKSKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88 >gi|309774624|ref|ZP_07669648.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] gi|308917524|gb|EFP63240.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] Length = 88 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 43/88 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++++ I+ + G+S + + + I D + E I+I+ F TF + R Sbjct: 1 MNKNEIIREIAYKQGISSEVTKGIIDQFIELIGDKMAQREKIQIAGFGTFEARFVSERSS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT +++ I FK LK++ Sbjct: 61 RNPQTGEKIIIPGHFSPKFKPGKALKEK 88 >gi|15616751|ref|NP_239963.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681506|ref|YP_002467891.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682062|ref|YP_002468446.1| integration host factor alpha-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471187|ref|ZP_05635186.1| integration host factor subunit alpha [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132925|sp|P57231|IHFA_BUCAI RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803511|sp|B8D8T2|IHFA_BUCA5 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|254803512|sp|B8D736|IHFA_BUCAT RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|25294341|pir||A84945 integration host factor alpha-subunit [imported] - Buchnera sp. (strain APS) gi|10038814|dbj|BAB12849.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621795|gb|ACL29951.1| integration host factor alpha-subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624349|gb|ACL30504.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085875|gb|ADP65957.1| integration host factor subunit alpha [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087027|gb|ADP67107.1| integration host factor subunit alpha [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087593|gb|ADP67672.1| integration host factor subunit alpha [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 102 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 35/99 (35%), Positives = 60/99 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ + +++ ++ L++K+S FV F E+ S +GEA+K+S F F +K+K +R G Sbjct: 3 LTKAAISENLFEKLQLTKKESKEFVEFFFEEVRKSLEKGEAVKLSGFGNFQIKKKKARPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN +T + I RRVV FKA LK +I + + + N Sbjct: 63 RNPRTGEIFLITARRVVTFKAGQKLKNKINNYLIKKNNN 101 >gi|325105835|ref|YP_004275489.1| histone family protein DNA-binding protein [Pedobacter saltans DSM 12145] gi|324974683|gb|ADY53667.1| histone family protein DNA-binding protein [Pedobacter saltans DSM 12145] Length = 101 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 46/98 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ I+ + G+ + D V F + +S + GE + + F +F VK++ + Sbjct: 1 MTKAEIIAEIANKTGIEKVDVQETVEAFFKVVKNSMISGENVYVRGFGSFVVKKRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 RN+ N + I V FK + ++ + K Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKAFVDKVKVGNKKAKA 98 >gi|282859928|ref|ZP_06269016.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282587331|gb|EFB92548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 91 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ LS+ DS + + I ++ +G+ I++ F TF V ++ +R G Sbjct: 1 MNKSELIDQIAASSDLSKADSKKALDATIKAIKEALAKGDKIQLVGFGTFAVNERPAREG 60 Query: 65 RNLQTNQEVKI 75 N T ++++I Sbjct: 61 INPSTKEKIQI 71 >gi|50955922|ref|YP_063210.1| DNA-binding HU protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952404|gb|AAT90105.1| DNA-binding HU protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 94 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 41/94 (43%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + +++LV +++ G S+ V F + D+ G + I + Q Sbjct: 1 MADNLNKTELVSAVAAASGQSQATVAAVVDAFFATVADTVKGGGKVTIPGWLAAERTQTA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R GRN QT +E+ I V A S LK + Sbjct: 61 ARTGRNPQTGEEISIPAGHRVKLTAGSKLKAAVK 94 >gi|261414759|ref|YP_003248442.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371215|gb|ACX73960.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327271|gb|ADL26472.1| DNA-binding protein HU [Fibrobacter succinogenes subsp. succinogenes S85] Length = 116 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 IT+ ++V I+ + G ++ + V L + I + + G I++ F F KQ+ R Sbjct: 8 ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V I + VF+ S L ++I + Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKINN 98 >gi|309813025|ref|ZP_07706753.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185] gi|308433097|gb|EFP57001.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185] Length = 91 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RSDL +I++ G+S KD+T + L + I ++ RG+ I++ T ++ +R G Sbjct: 1 MNRSDLASTIAQRTGVSVKDATAVLAGLNDVIIEAVGRGDKIQLPGLLTIERVERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT E++I A S LK Sbjct: 61 RNPQTGAEIEIPAGYAAKVTAGSKLKAA 88 >gi|294673496|ref|YP_003574112.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294473143|gb|ADE82532.1| DNA-binding protein, HU family [Prevotella ruminicola 23] Length = 95 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + D + +++ G S ++ +FV + + D +++ I +F TF VK+K R+ Sbjct: 1 MNNKDFITELAQRTGYSADETQQFVNCVVEAMGDHFQDDDSVLIPTFGTFEVKKKMERIM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ V+ FK + K+R+ + Sbjct: 61 VNPSTGQRMLVPPKLVLTFKPNVSWKERVKNG 92 >gi|221128059|ref|XP_002155705.1| PREDICTED: similar to hlpA [Hydra magnipapillata] gi|260222710|emb|CBA32540.1| DNA-binding protein HU-alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 94 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 41/82 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+++++ + LS+ + R + L I + E +++ F TF ++ +R G Sbjct: 1 MNKGELIEALAAKSELSKAAAGRTLDALIEIITAKVAKKEDVQLIGFGTFKAAKRAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 +N +T + +KI V F Sbjct: 61 KNPRTGEALKITATTVPKFTPG 82 >gi|284029180|ref|YP_003379111.1| histone family protein DNA-binding protein [Kribbella flavida DSM 17836] gi|283808473|gb|ADB30312.1| histone family protein DNA-binding protein [Kribbella flavida DSM 17836] Length = 97 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 44/94 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++LV ++ + G+ R + + + L + + ++ +G+ + ++ + + R G Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + + I V S LK D+R Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAARGDLR 94 >gi|149277324|ref|ZP_01883466.1| DNA-binding protein HU [Pedobacter sp. BAL39] gi|149232201|gb|EDM37578.1| DNA-binding protein HU [Pedobacter sp. BAL39] Length = 100 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS + G+ + D V F I +S + GE + + F +F VK++ + Sbjct: 1 MTKADIISEISTKTGIEKVDVQETVEAFFKVIKNSMIGGENVYVRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I V FK + + ++ ++ + Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKVFVDKVKNNSK 94 >gi|227875778|ref|ZP_03993906.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243] gi|306819051|ref|ZP_07452768.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239] gi|227843720|gb|EEJ53901.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243] gi|304648244|gb|EFM45552.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239] Length = 93 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV I+K LS+ ++ ++ + + +S +GE +K++ + +R Sbjct: 2 SVNRTELVAEIAKRAALSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN +T +E+KI V A S LKK + Sbjct: 62 GRNPRTGEEIKIPAGFGVKISAGSTLKKAV 91 >gi|224025287|ref|ZP_03643653.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM 18228] gi|224018523|gb|EEF76521.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM 18228] Length = 93 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I+ + GL ++ + V + + S + GE + + F +F +K + + Sbjct: 1 MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + + + FK S R+ D Sbjct: 61 RNISRNTTIIVPAHNIPAFKPSKAFAGRMKSD 92 >gi|317476084|ref|ZP_07935336.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316907722|gb|EFV29424.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 93 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 43/92 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I+++ G+ + +T V + +S + G + + F +F +KQK + Sbjct: 1 MTKADIIARIAQDTGIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFILKQKAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN N + I V FK + + + Sbjct: 61 RNFSKNTTIVIPAHHVPAFKPAKTFLDAVKEG 92 >gi|325142000|gb|EGC64435.1| integration host factor subunit alpha [Neisseria meningitidis 961-5945] Length = 72 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 35/65 (53%) Query: 30 TTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 F EI + GE IKIS F F ++ K R GRN +T +EV I RRVV F AS L Sbjct: 1 ELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKL 60 Query: 90 KKRIM 94 K + Sbjct: 61 KSMVE 65 >gi|255534852|ref|YP_003095223.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10] gi|255341048|gb|ACU07161.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10] Length = 96 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ +++ + G+++ + + + + + + + + + F TF V ++ +R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T + +KI + V FKA + L +M + Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSVMGGKK 95 >gi|60681456|ref|YP_211600.1| putative histone-like DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|60492890|emb|CAH07665.1| putative histone-like DNA-binding protein [Bacteroides fragilis NCTC 9343] Length = 91 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 46/86 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+K ++ L+ K+++ V + N + ++ +R E++ + F TF +K + +R Sbjct: 1 MNKHDLIKKVALRGNLNAKEASAIVEVVMNAMVEAILREESVTLVGFGTFSIKMRKARNV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 N T + + I R+VV F +K Sbjct: 61 LNPSTGENMVIPARKVVKFTPGYKMK 86 >gi|254374459|ref|ZP_04989941.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548] gi|151572179|gb|EDN37833.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548] Length = 66 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + + G+++ + F TF VK++ R GRN +T + +KI +V FKA Sbjct: 1 LDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKAGKG 60 Query: 89 LKKRIM 94 LK + Sbjct: 61 LKDAVK 66 >gi|71083725|ref|YP_266445.1| DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062838|gb|AAZ21841.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062] Length = 102 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M +T +T+ DL+ SI + G S+ S + I D+ + +K+S F TF ++ K Sbjct: 3 MQRTNLTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAK 62 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR+GRN +T ++ I R VV+FKAS K + Sbjct: 63 KSRIGRNPKTKEQTTISNRDVVLFKASKEFKDLVN 97 >gi|256820307|ref|YP_003141586.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|315223334|ref|ZP_07865193.1| integration host factor subunit alpha [Capnocytophaga ochracea F0287] gi|256581890|gb|ACU93025.1| histone family protein DNA-binding protein [Capnocytophaga ochracea DSM 7271] gi|314946665|gb|EFS98654.1| integration host factor subunit alpha [Capnocytophaga ochracea F0287] Length = 104 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 51/100 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS + GL + D V NE+ ++ G+ + + F +F +K + + G Sbjct: 1 MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN+ N +KI + FK + + + + ++ K +K Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVEGVKAKVKVAKTDK 100 >gi|157164945|ref|YP_001466788.1| DNA-binding protein HU 1 (DNA-binding protein II; HB) [Campylobacter concisus 13826] gi|157101488|gb|EAT97269.2| DNA-binding protein, HU family [Campylobacter concisus 13826] Length = 100 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 42/87 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ +++++ + GLS+KD+ + V I +G+ I F TF + +R Sbjct: 1 MKKAEFIQAVADKAGLSKKDTLKVVDATLETIQAVLEKGDTISFIGFGTFGTADRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 R T + + + + V FK LK+ Sbjct: 61 RVPGTKKVIDVPASKAVKFKVGKKLKE 87 >gi|289549079|ref|YP_003474067.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] gi|289182696|gb|ADC89940.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] Length = 90 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 54/90 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV +I+K G+++K++ + + D+ +GE + I F F V+Q+ +R G Sbjct: 1 MTKAELVSAIAKGAGITKKEADAALKAAVAAVADALKKGERVAIPGFGIFTVRQRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + I R+VVVF+ + L++ + Sbjct: 61 RNPRTGAVINIPARKVVVFRPAKDLREGLK 90 >gi|323358137|ref|YP_004224533.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum StLB037] gi|323274508|dbj|BAJ74653.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum StLB037] Length = 95 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K+IT+++LV SI+ G S+ + + +LF+ + ++ +G + I + F +R Sbjct: 4 KSITKTELVASIASATGQSQSAVSGVLDSLFSTVSEAVAKGSKVSIPGWIAFEQVATSAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT +E+ I + V A S LK + Sbjct: 64 TGRNPQTGEEISIPAGKRVKVTAGSKLKAAVK 95 >gi|237737338|ref|ZP_04567819.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] gi|229421200|gb|EEO36247.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] Length = 90 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + ++ +++ L++K++ + + + +S V+G+ + + + V ++ +R Sbjct: 1 MTKKEFIELYAEKGNLTKKEAEKNINLFLESVEESLVKGDEVTFVGWGKWEVVERAAREV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ Q+ + +K+ ++ V FK +L +I Sbjct: 61 RSPQSKEIIKVPAKKAVKFKVGKLLADKIK 90 >gi|126727233|ref|ZP_01743069.1| histone-like DNA-binding protein [Rhodobacterales bacterium HTCC2150] gi|126703442|gb|EBA02539.1| histone-like DNA-binding protein [Rhodobacterales bacterium HTCC2150] Length = 94 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 45/94 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV + + GL +K + + L I G A+ + F+ +++ Sbjct: 1 MSKPMTKTQLVAAYADASGLDKKTAGAALEALVGLITKEVSGGGAVTLPGLGKFYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN T +++K D RVV + LK + Sbjct: 61 ERMVRNPATGEQIKKDADRVVKVTIAKALKDSVN 94 >gi|209885048|ref|YP_002288905.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5] gi|209873244|gb|ACI93040.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5] Length = 99 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + +T L ++ +G+ I+I V+++ +R+ Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDLVTKVTKHLKKGDRIRIVGLGILQVRKRAARM 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + + I + V F+AS LK+ I Sbjct: 70 GRNPATGEAIHIKASKKVAFRASKELKEAI 99 >gi|313205318|ref|YP_004043975.1| bacterial nucleoid protein hbs [Paludibacter propionicigenes WB4] gi|312444634|gb|ADQ80990.1| bacterial nucleoid protein Hbs [Paludibacter propionicigenes WB4] Length = 90 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 40/69 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E GLS+ D+ + + + + D+ V G+ + + F TF V ++ +R G Sbjct: 1 MNKAELINAIAAEAGLSKADAKKALDAVVKSVSDALVAGDKVSLVGFGTFSVSERSARSG 60 Query: 65 RNLQTNQEV 73 N T Q + Sbjct: 61 INPATKQPI 69 >gi|326445075|ref|ZP_08219809.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] Length = 93 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + R++L+ ++++ ++RKD+ +T L + + +G E + I F TF + +R Sbjct: 1 MNRTELIAALTERAEVTRKDADAVLTALAETVGEIVAKGDEKVTIPGFLTFERIHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|302542250|ref|ZP_07294592.1| putative DNA binding protein HU [Streptomyces hygroscopicus ATCC 53653] gi|302459868|gb|EFL22961.1| putative DNA binding protein HU [Streptomyces himastatinicus ATCC 53653] Length = 194 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F ++ +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAAEAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVERPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|239918394|ref|YP_002957952.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC 2665] gi|289707035|ref|ZP_06503366.1| DNA-binding protein HU [Micrococcus luteus SK58] gi|239839601|gb|ACS31398.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC 2665] gi|289556221|gb|EFD49581.1| DNA-binding protein HU [Micrococcus luteus SK58] Length = 93 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R +LV ++++ G ++ + + LF +GE + I + ++ R Sbjct: 2 AMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERT 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +E+ I V A S LK Sbjct: 62 GRNPRTGEEITIPAGHSVKVTAGSKLKAA 90 >gi|294053548|ref|YP_003547206.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293612881|gb|ADE53036.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 103 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+ D+V I ++ +K+ V + I ++ +G +++ +F F V+ + Sbjct: 1 MSNNLTKRDIVLDIYEKTDFPQKEVRETVQLTLDAIANALRQGRNVELRNFGVFEVQVRK 60 Query: 61 SRVGRNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 SR+GRN + V I R V+ FKA LK + + Sbjct: 61 SRIGRNPNKPETDVVIPTRAVIKFKAGKELKGALKE 96 >gi|282861336|ref|ZP_06270401.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] gi|282563994|gb|EFB69531.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] Length = 218 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV-TSPSGS 113 RN QT + V++ V F+A K + + K + V +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGEVSVKKAPKGS 109 >gi|223041461|ref|ZP_03611664.1| integration host factor, alpha chain [Actinobacillus minor 202] gi|240949160|ref|ZP_04753507.1| integration host factor subunit alpha [Actinobacillus minor NM305] gi|223017719|gb|EEF16126.1| integration host factor, alpha chain [Actinobacillus minor 202] gi|240296463|gb|EER47099.1| integration host factor subunit alpha [Actinobacillus minor NM305] Length = 98 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 54/91 (59%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +L +++ ++ G ++ + F+ F EI + GE +K+S F F V++K +R Sbjct: 2 ALTKIELAEALVEKCGFEKRTAKLFIDQFFEEIKRALTTGEEVKLSGFGNFSVREKNARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + V + RRVVVFKA ++ R+ Sbjct: 62 GRNPKTGESVAVSARRVVVFKAGQKMRDRVE 92 >gi|170739317|ref|YP_001767972.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] gi|168193591|gb|ACA15538.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] Length = 102 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R+ L++ ++ L + V + + I ++ + G+ I++ F + +R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V++ +R V F+AS + +R+ Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91 >gi|299135036|ref|ZP_07028227.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2] gi|298590013|gb|EFI50217.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2] Length = 99 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T L ++++E LS+K + +T + +I +GE I+I V+++ +R+ Sbjct: 10 TVTLKHLAAALAEEHELSKKTAEAILTDMVTKITKHLKKGERIRIVGLGILQVRKRAARM 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + + I + V F+A+ LK+ + Sbjct: 70 GRNPATGEAIHIKASKKVAFRAAKELKEAV 99 >gi|219883076|ref|YP_002478240.1| histone family protein DNA-binding protein [Arthrobacter chlorophenolicus A6] gi|219862082|gb|ACL42423.1| histone family protein DNA-binding protein [Arthrobacter chlorophenolicus A6] Length = 93 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 41/92 (44%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R+ LV ++++ G ++ D R + +F S GE I I + + +R Sbjct: 2 AVNRAQLVDQVAEKSGATKADVNRILDGMFEVFETSVAAGEKITIPGWLAVERTDRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT + ++I V A S LK I Sbjct: 62 GRNPQTGESIEIAAGHSVKLTAGSKLKAAIAK 93 >gi|291514301|emb|CBK63511.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 96 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+ + G+ + + V I ++ + GE + + F +F VK++ +V Sbjct: 1 MTKAELVALITHQTGVEKTAAEAVVEAFMRNIKETMIAGEDVFLRGFGSFIVKERAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I + FK S + + + + + Sbjct: 61 RNITKNTTMVIPAHSIPAFKPSKVFLEAVKEGNK 94 >gi|302558180|ref|ZP_07310522.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000] gi|302475798|gb|EFL38891.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000] Length = 213 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V GE + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAAEAVDHVLDAIVRAVVAGERVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|150005930|ref|YP_001300674.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|149934354|gb|ABR41052.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] Length = 94 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L K IS + G + V +L E+ +S +GE + + F +F VKQ+ + Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK S L K + Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVNK 91 >gi|282879045|ref|ZP_06287805.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] gi|281298779|gb|EFA91188.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] Length = 90 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 41/71 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I++ G+S+ + + + + I ++ G+ +++ F TF V ++ +R G Sbjct: 1 MNKTELIDKIAEAAGISKVAAKKALDATTDSIKEALKEGDKVQLIGFGTFSVSERSAREG 60 Query: 65 RNLQTNQEVKI 75 N T ++++I Sbjct: 61 INPLTKEKIQI 71 >gi|329296189|ref|ZP_08253525.1| integration host factor subunit alpha [Plautia stali symbiont] Length = 77 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 42/74 (56%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ + + ++ GLS++D+ V F E+ + GE +K+S F F ++ K R Sbjct: 2 ALTKAEMSEYLFEKLGLSKRDAKELVEFFFEEVRRALENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQTNQEVKIDP 77 GRN +T + + P Sbjct: 62 GRNPKTGKIFQSPP 75 >gi|326408797|gb|ADZ65862.1| Integration host factor, alpha subunit [Brucella melitensis M28] gi|326538516|gb|ADZ86731.1| integration host factor, alpha subunit [Brucella melitensis M5-90] Length = 79 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 37/76 (48%), Positives = 55/76 (72%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 V + +E+CD+ V GE +K+SSFATF V+ K R+GRN +T +EV I PRRV+ FKAS+ Sbjct: 1 MVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRRVMTFKASN 60 Query: 88 ILKKRIMDDMRGRKCN 103 +LK+RI+ + + R+ Sbjct: 61 VLKQRILQEHQKRQGK 76 >gi|302554387|ref|ZP_07306729.1| histone protein DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302472005|gb|EFL35098.1| histone protein DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 214 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I S V GE + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKMG-GRQQAADAVDHVLDAIVRSVVSGERVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT + V++ V F+A K + + Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93 >gi|237737109|ref|ZP_04567590.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229420971|gb|EEO36018.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 92 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + V ++ + + D+ + I + +G+ I F F V ++ +R Sbjct: 1 MTKKEFVDLYFQKGEFTTKVDAEKKAMAFLATIEEVLEKGDEISFLGFGKFEVTERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +E+K++ ++ V FKA L +++ Sbjct: 61 CRNPQTGEEMKVEAKKAVKFKAGKALSEKVNK 92 >gi|308271765|emb|CBX28373.1| DNA-binding protein HU 1 [uncultured Desulfobacterium sp.] Length = 107 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + ++DLV ++ ++ ++ V +F + + G+ +K++ F TF VK++ +R Sbjct: 16 ENMNKTDLVNEVAAIVSNTK-EAKAVVDCIFTSMTAALKNGDEVKLAGFGTFKVKERKAR 74 Query: 63 VGRNLQTNQEVKI 75 GRN +T +E+KI Sbjct: 75 TGRNPKTGEEIKI 87 >gi|298373677|ref|ZP_06983666.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058] gi|298274729|gb|EFI16281.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058] Length = 93 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +S++ G+SR + R + + + + +S +GE + + +F +F VKQ+ ++ Sbjct: 1 MTKADIVNEVSRKTGISRDEVLRTLESFMDTVKNSLGKGENVYMRTFGSFIVKQRAAKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N +KI ++ FK S + Sbjct: 61 RNITKNTTIKIPAHKIPAFKPSKEFSAMVKK 91 >gi|256826372|ref|YP_003150332.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547] gi|256689765|gb|ACV07567.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547] Length = 91 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R++L +I+++ +S KD+ ++ + + IC++ +GE + + T ++ +R G Sbjct: 1 MNRTELASAIAQQADVSAKDAAAVLSAMGDVICETVGKGEKVSLPGLMTIERVERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T + ++I A S LK Sbjct: 61 RNPRTGESMEIPASFGAKLSAGSALKAA 88 >gi|167754218|ref|ZP_02426345.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM 17216] gi|237711927|ref|ZP_04542408.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|317474934|ref|ZP_07934203.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|167658843|gb|EDS02973.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM 17216] gi|229454622|gb|EEO60343.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|316908837|gb|EFV30522.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 93 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V+ I+ + GL ++ + V + + S + GE + + F +F +K + + Sbjct: 1 MTKADIVREIATQTGLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N V + + FK S R+ D Sbjct: 61 RNISRNTTVIVPAHNIPAFKPSKAFAGRMKSD 92 >gi|53715708|ref|YP_101700.1| HU family DNA-binding protein [Bacteroides fragilis YCH46] gi|60683646|ref|YP_213790.1| putative histone-like DNA-binding protein HU4 [Bacteroides fragilis NCTC 9343] gi|253566476|ref|ZP_04843929.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5] gi|265767345|ref|ZP_06095011.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|52218573|dbj|BAD51166.1| DNA binding protein HU family [Bacteroides fragilis YCH46] gi|60495080|emb|CAH09899.1| putative histone-like DNA-binding protein HU4 [Bacteroides fragilis NCTC 9343] gi|251944648|gb|EES85123.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5] gi|263252650|gb|EEZ24162.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|301165158|emb|CBW24728.1| putative histone-like DNA-binding protein HU4 [Bacteroides fragilis 638R] Length = 96 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL++SI+ + L ++ V + I ++ +GE++ + F TF VK++ +R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 NL T + + I ++ V FK + + Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85 >gi|237807496|ref|YP_002891936.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] gi|237499757|gb|ACQ92350.1| histone family protein DNA-binding protein [Tolumonas auensis DSM 9187] Length = 91 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ E ++ + + L + V GE + I TF + K +R+G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT + V+I ++ V FKA+ L + + Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVNE 91 >gi|150005790|ref|YP_001300534.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|254882028|ref|ZP_05254738.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|294776169|ref|ZP_06741658.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|319640964|ref|ZP_07995672.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] gi|149934214|gb|ABR40912.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|254834821|gb|EET15130.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|294449992|gb|EFG18503.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|317387409|gb|EFV68280.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] Length = 90 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S++ G + KD+++ V+++ + G I I F TF VK+K R+ Sbjct: 1 MNNKEFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + I P+ V+ +K S LK++ Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEK 88 >gi|154149063|ref|YP_001406367.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter hominis ATCC BAA-381] gi|153805072|gb|ABS52079.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Campylobacter hominis ATCC BAA-381] Length = 107 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 51/92 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ +++++++ G ++K +T V + I D V+G++I F +F + ++ +R G Sbjct: 1 MKKAEFIQAVAEKTGSTKKVATEVVDSALEVISDVLVKGDSISFIGFGSFGLAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + TN+ K +VV FK LK+ + + Sbjct: 61 KVPGTNRTYKSPATKVVKFKVGKQLKEAVAEA 92 >gi|325269256|ref|ZP_08135875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella multiformis DSM 16608] gi|324988485|gb|EGC20449.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella multiformis DSM 16608] Length = 97 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ +S R V ++ + S G+ + +S F TF VK++ RV Sbjct: 1 MNNKEFIAELASRTGYTQDESQRMVKSVIELMGKSFEAGDPVSVSGFGTFEVKKRLERVM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T Q + + P+ V+ FK ++ +K ++ Sbjct: 61 VNPSTGQRMLVPPKLVLNFKPAANIKGQV 89 >gi|281415410|ref|ZP_06247152.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC 2665] Length = 91 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV ++++ G ++ + + LF +GE + I + ++ R G Sbjct: 1 MNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN +T +E+ I V A S LK Sbjct: 61 RNPRTGEEITIPAGHSVKVTAGSKLKAA 88 >gi|254383272|ref|ZP_04998625.1| histone protein DNA-binding protein [Streptomyces sp. Mg1] gi|194342170|gb|EDX23136.1| histone protein DNA-binding protein [Streptomyces sp. Mg1] Length = 224 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 2/110 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV-TSPSGS 113 RN QT + V++ V F+A K + + K + V +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKGGEVSVKKAPKGS 109 >gi|237738391|ref|ZP_04568872.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] gi|229420271|gb|EEO35318.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] Length = 91 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ D K + ++ S + ++ R + N I ++ G+ + I + F V +K RV Sbjct: 1 MTKKDFTKVLFEKGVFSSKAEAERKFEVILNTIEETLKAGDELNIIGWGKFEVVEKAERV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +E+ I ++ V FKA L +++ Sbjct: 61 GRNPKTGEEIVIPAKKTVKFKAGKTLVEKMN 91 >gi|326798549|ref|YP_004316368.1| histone family protein DNA-binding protein [Sphingobacterium sp. 21] gi|326549313|gb|ADZ77698.1| histone family protein DNA-binding protein [Sphingobacterium sp. 21] Length = 94 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS + GL + D V F + + V GE + + F +F VK++ + Sbjct: 1 MTKAEIIAEISNKTGLEKVDVQETVEAFFKVVKGAMVGGENVYVRGFGSFVVKKRAKKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + I V FK + + +++ + + Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 94 >gi|315926169|ref|ZP_07922369.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC 23263] gi|315620613|gb|EFV00594.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC 23263] Length = 96 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +S+ V +++K GLS+KD+ + + L I ++ GE + + +F TF + R G N Sbjct: 8 KSEFVSAMAKNAGLSKKDTRKELDALIKIIMETVKEGEKVLLMNFGTFDCYYRQGRPGSN 67 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T + + + F+A K+ + + Sbjct: 68 PRTGEPIDVAACYSPRFRAGRAFKRALKE 96 >gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 130 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 1/110 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ +++ + G SRK + V + + I + V GE + ++ F +F + +R Sbjct: 1 MNKAQLINAVADKMG-SRKQAADAVEHVLDTIVRTVVAGERVSVTGFGSFEKVSRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 RN QT + V++ + F+A K + K +P G++ Sbjct: 60 RNPQTGERVRVKKSSMPRFRAGQGFKDLASGTKKLPKKGVSIRKAPKGTF 109 >gi|237725389|ref|ZP_04555870.1| DNA-binding protein HU [Bacteroides sp. D4] gi|265753597|ref|ZP_06088952.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] gi|229436076|gb|EEO46153.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4] gi|263235311|gb|EEZ20835.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] Length = 90 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S++ G + KD+++ V+++ + G I I F TF VK+K R+ Sbjct: 1 MNNKEFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + I P+ V+ +K S LK++ Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEK 88 >gi|257125480|ref|YP_003163594.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] gi|257049419|gb|ACV38603.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] Length = 93 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 43/73 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + V + +K G ++K + V + + +S ++G++++ + TF VK++ +R G Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60 Query: 65 RNLQTNQEVKIDP 77 N QT +E++I Sbjct: 61 INPQTKEEIQIPE 73 >gi|182435719|ref|YP_001823438.1| putative histone-like DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776344|ref|ZP_08235609.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] gi|178464235|dbj|BAG18755.1| putative histone-like DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656677|gb|EGE41523.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] Length = 224 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKNDVAVKKAPKGS 108 >gi|302522114|ref|ZP_07274456.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78] gi|318056528|ref|ZP_07975251.1| putative histone-like DNA-binding protein [Streptomyces sp. SA3_actG] gi|318076088|ref|ZP_07983420.1| putative histone-like DNA-binding protein [Streptomyces sp. SA3_actF] gi|302431009|gb|EFL02825.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78] Length = 209 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+++ V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGTKKLPKNDVAVKKAPKGS 108 >gi|295836329|ref|ZP_06823262.1| DNA binding protein HU [Streptomyces sp. SPB74] gi|197699336|gb|EDY46269.1| DNA binding protein HU [Streptomyces sp. SPB74] Length = 209 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+++ V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKLG-GRQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 RN QT + V++ V F+A K + + K + +P GS Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVAGTKKLPKNDVAVKKAPKGS 108 >gi|302537148|ref|ZP_07289490.1| predicted protein [Streptomyces sp. C] gi|302446043|gb|EFL17859.1| predicted protein [Streptomyces sp. C] Length = 248 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + ++ LV++I+ + G R+ + V + + + + V G+ + ++ F +F + + Sbjct: 16 GEDVNKAQLVEAIADKLG-GRQQAADAVDAVLDAMVRAVVAGDRVSVTGFGSFEKVDRPA 74 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R RN QT + V++ V F+A K + + K ++ Sbjct: 75 RYARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGTKKLPKGDE 117 >gi|255016156|ref|ZP_05288282.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|256842574|ref|ZP_05548076.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|256735930|gb|EEU49262.1| integration host factor, alpha subunit [Parabacteroides sp. D13] Length = 98 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 48/92 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R +LV+S+ +E GL + V L + GE+I + F +F Q+ R+ Sbjct: 7 SMNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +EV I PR V FKA S L K + + Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 98 >gi|237709945|ref|ZP_04540426.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|229456038|gb|EEO61759.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] Length = 90 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S+ G + KD+++ V+++ + G I I F TF VK+K R+ Sbjct: 1 MNNKEFISELSRRLGYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + I P+ V+ +K S LK++ Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEK 88 >gi|148550580|ref|YP_001260019.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] gi|148502999|gb|ABQ71252.1| histone family protein DNA-binding protein [Sphingomonas wittichii RW1] Length = 92 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 47/90 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL ++ G ++ D+ + V +F I D+A +GE + ++ F F VK +R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T + +KI + + F + +K R+ Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLN 91 >gi|91763239|ref|ZP_01265203.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique HTCC1002] gi|91717652|gb|EAS84303.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique HTCC1002] Length = 100 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 1 MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M +T +T+ DL+ SI + G S+ S + I D+ + +K+S F TF ++ K Sbjct: 1 MKRTNLTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR+GRN +T ++ I R VV+FKAS K + Sbjct: 61 KSRIGRNPKTKEQTTISNRDVVLFKASKEFKDLVN 95 >gi|152966297|ref|YP_001362081.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151360814|gb|ABS03817.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 185 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK++T V + I + +G+ I IS F TF + + +R G Sbjct: 1 MNKAEMVDALETRLG-GRKEATTAVEAVIELIQLTVAKGDKIAISGFGTFEKQVRNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEVVSD 90 >gi|313202747|ref|YP_004041404.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] gi|312442063|gb|ADQ78419.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] Length = 90 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + DS + E + + F +F +KQ+ + Sbjct: 1 MTKADIVNEIAKNTGIDKVTVLTTVEAFMETVKDSLSKNENVYLRGFGSFVIKQRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPAHNIPSFKPAKTF 85 >gi|85057759|ref|YP_456675.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789864|gb|ABC65596.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 106 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQKGS 61 + + ++ ++++ G+++K++ +F+ I + E + ++ F TF K + + Sbjct: 1 MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R G+N +T + + I ++V FK S +LK Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >gi|288802260|ref|ZP_06407700.1| DNA-binding protein HU [Prevotella melaninogenica D18] gi|302346648|ref|YP_003814946.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] gi|288335227|gb|EFC73662.1| DNA-binding protein HU [Prevotella melaninogenica D18] gi|302151019|gb|ADK97280.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] Length = 92 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + I DS + E + + F +F VK + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMETIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88 >gi|251773380|gb|EES53929.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 99 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SDL +++EF G++ + + + + + G+ ++I F V +K R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T V I R+ V FK LK Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89 >gi|94499890|ref|ZP_01306426.1| Histone-like DNA-binding protein [Oceanobacter sp. RED65] gi|94428091|gb|EAT13065.1| Histone-like DNA-binding protein [Oceanobacter sp. RED65] Length = 91 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L ++++ +S++ ++ +T + ++I +S + +++ + F +F K + R G Sbjct: 1 MRKPELAAAVAENADISKEKASEIITIITDQITESLRKNDSVSLIGFGSFVQKHRPERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N QT + + I V FK LK + + Sbjct: 61 KNPQTGEAITIKASNSVGFKPGKALKDAVNN 91 >gi|307566102|ref|ZP_07628560.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307345290|gb|EFN90669.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 92 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+S+KD + V + I DS + E + + F +F VK + + Sbjct: 1 MTKADIINEIATGTGISKKDVSAVVESFMEAIKDSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + Sbjct: 61 ARNISKNTTLTIPAHDFPSFKPAKTFIE 88 >gi|281420827|ref|ZP_06251826.1| DNA-binding protein HU [Prevotella copri DSM 18205] gi|281405119|gb|EFB35799.1| DNA-binding protein HU [Prevotella copri DSM 18205] Length = 94 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 43/93 (46%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ ++ G+ +K+ V E+ + + + + F +F++K + ++ Sbjct: 1 MTKADIINEVAIATGMPKKEVGTVVEAFMEEVKKCLIEKKDNVYLRGFGSFNIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK S + + + Sbjct: 61 ARNISKNTTITIPAHDLPSFKPSKSFIEEMQNA 93 >gi|312889709|ref|ZP_07749257.1| histone family protein DNA-binding protein [Mucilaginibacter paludis DSM 18603] gi|311297829|gb|EFQ74950.1| histone family protein DNA-binding protein [Mucilaginibacter paludis DSM 18603] Length = 101 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I+ + G ++ + + F + S GE + + F TF VK++ +++G Sbjct: 1 MTKADVIAGITAKTGKGKEATETIIDAFFEVVQSSLTNGEDVFVRGFGTFLVKKRAAKIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N V+I + F+ K ++ +R Sbjct: 61 RNITKNTAVQIPESYIPAFRPGDEFKNKVKAAVR 94 >gi|94986874|ref|YP_594807.1| nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] gi|94731123|emb|CAJ54485.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis PHE/MN1-00] Length = 96 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 48/95 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ +T+ D++ +I ++ ++ D V TL + + + + IS F F K Sbjct: 1 MNNVLTKVDIIDAIYEKINNNKADIKNIVETLLSIMKQAIKTDNTLLISGFGKFEAYSKH 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT++ + + R+V+VF+ S + + Sbjct: 61 TRKGRNPQTDEAITLPSRKVIVFRLSKKFRTELNK 95 >gi|332298535|ref|YP_004440457.1| histone family protein DNA-binding protein [Treponema brennaborense DSM 12168] gi|332181638|gb|AEE17326.1| histone family protein DNA-binding protein [Treponema brennaborense DSM 12168] Length = 101 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-V 63 +T+ DL++S+ + ++ +L ++I +S G I++ F TF + + R Sbjct: 4 VTKYDLIESVYQNTKCEKRVVQEVFESLLDQIKESLKSGATIELRGFGTFEPRLRKGRKK 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + P + F++ LK + + Sbjct: 64 ARNPKTGDHLSVPPHYIAAFRSGQELKNALWN 95 >gi|329956611|ref|ZP_08297184.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056] gi|328523983|gb|EGF51059.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056] Length = 88 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 39/71 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +++ E GLS+ DS R + + + G+ + + F TF V ++ RVG Sbjct: 1 MNKSELISAMAAEAGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRVG 60 Query: 65 RNLQTNQEVKI 75 N T + ++I Sbjct: 61 INPATKKPIQI 71 >gi|152965328|ref|YP_001361112.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] gi|151359845|gb|ABS02848.1| histone family protein DNA-binding protein [Kineococcus radiotolerans SRS30216] Length = 179 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V ++ G RK + V + I + +G+ + IS F TF + + +R G Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + VKI V F+ + K+ + D Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90 >gi|225012358|ref|ZP_03702794.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] gi|225003335|gb|EEG41309.1| histone family protein DNA-binding protein [Flavobacteria bacterium MS024-2A] Length = 97 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 48/97 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V +IS + G+ R D V E+ S +GE + + F +F +K + + G Sbjct: 1 MTKADIVSNISDQLGIDRADVQATVEKFMKEVKGSLEKGENVYLRGFGSFIIKTRAEKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN+ N +KI + FK + I K + + K Sbjct: 61 RNISKNIALKIPAHNIPSFKPAKIFVKGVKSKVPVSK 97 >gi|159036797|ref|YP_001536050.1| histone family protein DNA-binding protein [Salinispora arenicola CNS-205] gi|157915632|gb|ABV97059.1| histone family protein DNA-binding protein [Salinispora arenicola CNS-205] Length = 209 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++S++ G RK +T + + E+ + +GE + I+ F F + +G+R Sbjct: 1 MNKAELIESLAVRLG-DRKTATAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ V F+ + K+ + Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGTGFKEMVASG 91 >gi|189463294|ref|ZP_03012079.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM 17136] gi|189430024|gb|EDU99008.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM 17136] Length = 91 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I++ G+ + + + + +S E + + F +F VK++ + Sbjct: 1 MTKADIVNEIARNTGIDKATVLTTLEAFMDSVKESLSNDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|315918607|ref|ZP_07914847.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692482|gb|EFS29317.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 92 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD++ + +L + + G + I F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90 >gi|302343276|ref|YP_003807805.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301639889|gb|ADK85211.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 101 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 49/93 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ ++ + + L + S V T I +S + + IS F F VK K +R Sbjct: 2 ALTKDHIISEVFERTQLPKSRSREVVETTLEIIKNSLADSDDLLISGFGKFLVKDKRARR 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT ++K+ R+VVVFK S +L+K + + Sbjct: 62 GRNPQTKADMKLRARKVVVFKTSGVLRKHLNGE 94 >gi|224026370|ref|ZP_03644736.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM 18228] gi|224019606|gb|EEF77604.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM 18228] Length = 91 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 40/85 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + + + DS + E + + F +F VK++ + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLTTLEAFMDSVKDSLSKDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|21672413|ref|NP_660480.1| integration host factor alpha-subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008628|sp|Q8KA11|IHFA_BUCAP RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|21623022|gb|AAM67691.1| integration host factor Alpha-subunit [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 100 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 55/90 (61%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ + +++ ++ L+++DS FV F E+ S +GE +K+S F F +K K R G Sbjct: 3 VTKAAISENLFEKLKLTKRDSKEFVEFFFEEVRKSLEKGEDVKLSGFGNFQLKNKKERPG 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + + I RRVV+FKA LK R+ Sbjct: 63 RNPRTGENILITQRRVVIFKAGQKLKNRVE 92 >gi|282881458|ref|ZP_06290132.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] gi|281304684|gb|EFA96770.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] Length = 94 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ GL +K+ V + +++ +S + E + + F +F +K + ++ Sbjct: 1 MTKADIINEIAASTGLQKKEVAVVVESFMSKVKESLLEKKENVYLRGFGSFIIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+Q N + ID + FK S + + Sbjct: 61 ARNIQKNTTITIDAHNLPSFKPSKSFVNAMKES 93 >gi|117925411|ref|YP_866028.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] gi|117609167|gb|ABK44622.1| histone family protein DNA-binding protein [Magnetococcus sp. MC-1] Length = 109 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 45/87 (51%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ I+++ LS T V L + + D R E + + F F VK+ +GR+ QT Sbjct: 6 LIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLGRHPQT 65 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDD 96 + +K+ + V FK+ S L+KR+ Sbjct: 66 GEMMKLPGKNVPFFKSDSELRKRLNGG 92 >gi|312977270|ref|ZP_07789018.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05] gi|310895701|gb|EFQ44767.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05] Length = 59 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + ++ +G +++ F TF V+ + +R GRN QT E++I V FK LK + Sbjct: 1 MQENLAKGFKVQLIGFGTFEVRHRAARKGRNPQTGDEIEIPASEVPAFKPGKALKDAVK 59 >gi|254284406|ref|ZP_04959374.1| integration host factor, beta subunit [gamma proteobacterium NOR51-B] gi|219680609|gb|EED36958.1| integration host factor, beta subunit [gamma proteobacterium NOR51-B] Length = 73 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + + + ++ GE I+I F +F + + R GRN +T V++ + V FK Sbjct: 1 MKLIIDHMAEALASGERIEIRGFGSFSLHYREPRKGRNPKTGDTVELSGKYVPHFKPGKE 60 Query: 89 LKKRIMDDMRG 99 L++R+ ++ Sbjct: 61 LRERVNRSLKA 71 >gi|332664549|ref|YP_004447337.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] gi|332333363|gb|AEE50464.1| histone family protein DNA-binding protein [Haliscomenobacter hydrossis DSM 1100] Length = 108 Score = 99.2 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 53/93 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV +IS++ G+ + D + T F E+ S GE + I F +F +K++ ++G Sbjct: 1 MRKADLVAAISEKTGVPKVDVLVTLETFFKEVKGSLADGENVYIRGFGSFVIKRRAKKIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 R+++ N ++I + FK + I +++ ++ Sbjct: 61 RHIKKNVAIEIPEHFIPSFKPAKIFVEQVKANV 93 >gi|88607772|ref|YP_505798.1| integration host factor, alpha subunit [Anaplasma phagocytophilum HZ] gi|88598835|gb|ABD44305.1| integration host factor, alpha subunit [Anaplasma phagocytophilum HZ] Length = 106 Score = 99.2 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 57/96 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+T++ + I++E GLSR+DS V + +E+ S VR ++KISSF F V +K Sbjct: 9 MVQTLTKARIASMINREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKK 68 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RVGRN +T ++ ++ V F S +K+ I D Sbjct: 69 ERVGRNPKTLEKFVVEEHNTVTFCPSVTVKRFINGD 104 >gi|269102460|ref|ZP_06155157.1| integration host factor alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162358|gb|EEZ40854.1| integration host factor alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 72 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + F E+ + GE +K+S F F ++ K R GRN +T +++ I RRVV F+ Sbjct: 1 MEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVTFRPGQK 60 Query: 89 LKKRIMD 95 LK R+ Sbjct: 61 LKARVEK 67 >gi|258511174|ref|YP_003184608.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477900|gb|ACV58219.1| histone family protein DNA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 90 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV + GL + + + T + GE + + F + +R Sbjct: 1 MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT + + + + V F+ S LK R+ Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90 >gi|71900575|ref|ZP_00682702.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|71729632|gb|EAO31736.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] Length = 69 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 39/66 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ LS+ ++ R + + NEI ++ +G+++ + F TF V+ + R G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERPG 60 Query: 65 RNLQTN 70 RN ++ Sbjct: 61 RNPKSG 66 >gi|332885920|gb|EGK06164.1| hypothetical protein HMPREF9456_00038 [Dysgonomonas mossii DSM 22836] Length = 91 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + V + + + DS + E + + F +F VK + + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK + ++ Sbjct: 61 RNISKNTTIIIPAHSIPAFKPAKTFITQVRK 91 >gi|269958260|ref|YP_003328047.1| integration host factor, alpha subunit [Anaplasma centrale str. Israel] gi|269848089|gb|ACZ48733.1| integration host factor, alpha subunit [Anaplasma centrale str. Israel] Length = 98 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 57/96 (59%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++T+TR+ L +I++E G+SR+D+ V + +E+ S VR +KISSF TF V +K Sbjct: 1 MAQTLTRAQLADTINREIGISREDALVLVGEMLDEMVSSLVRDGLLKISSFGTFKVIRKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RV RN +T ++ + V F S +K+ I + Sbjct: 61 ERVCRNPKTLEQFIVKEHNTVTFCPSVTMKRLINGE 96 >gi|269214903|ref|ZP_06158902.1| integration host factor subunit beta [Neisseria lactamica ATCC 23970] gi|269208725|gb|EEZ75180.1| integration host factor subunit beta [Neisseria lactamica ATCC 23970] Length = 80 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 39/69 (56%) Query: 30 TTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 +L + + S RG+ I+I F +F + + +R+GRN +T + V++ + V FK L Sbjct: 8 ESLGDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKEL 67 Query: 90 KKRIMDDMR 98 ++R+ ++ Sbjct: 68 RERVDLALK 76 >gi|152986799|ref|YP_001346553.1| putative DNA binding protein [Pseudomonas aeruginosa PA7] gi|150961957|gb|ABR83982.1| probable DNA binding protein [Pseudomonas aeruginosa PA7] Length = 93 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L++ I++ + + L + + D+ I + V ++ +R Sbjct: 2 ALTKDQLIQDIAEAIDAPKTTVRSALDQLTDIVKDALENDGEITLPGIGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT + ++I +RV F + L I Sbjct: 62 GRNPQTGKAIEIAAKRVAKFVPAKALTDAING 93 >gi|114326682|ref|YP_743839.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] gi|114314856|gb|ABI60916.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] Length = 101 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +DL+ I+K ++ V+ I + GE ++IS F V ++ +R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT ++I R F+A LK + Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVNG 91 >gi|163781827|ref|ZP_02176827.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1] gi|159883047|gb|EDP76551.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1] Length = 90 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 53/90 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV ++K+ G+++K++ + I + +GE I I F VK++ +R G Sbjct: 1 MTKAELVAEVAKQAGITKKEADAALKAAVAAIAKALKKGERIAIPGLGIFTVKKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T Q ++I R+VV FK + L++ I Sbjct: 61 RNPRTGQVIQIPARKVVAFKPAKDLRESIK 90 >gi|325268537|ref|ZP_08135167.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608] gi|324989065|gb|EGC21018.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608] Length = 91 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 49/90 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I + V G+ +++ F TF V ++ + G Sbjct: 1 MNKTELIEKIAASAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T ++++I ++V FKA + L + Sbjct: 61 INPATKEKIQIAAKKVAKFKAGAELADAVN 90 >gi|330466240|ref|YP_004403983.1| histone family protein DNA-binding protein [Verrucosispora maris AB-18-032] gi|328809211|gb|AEB43383.1| histone family protein DNA-binding protein [Verrucosispora maris AB-18-032] Length = 219 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G RK +T + + E+ + +GE + I+ F F + +G+R Sbjct: 1 MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ V F+ + K+ + Sbjct: 60 RNPRTGEAVKVKKTSVPTFRPGAGFKEMVASG 91 >gi|238897899|ref|YP_002923578.1| integration host factor (IHF), DNA-binding protein, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465656|gb|ACQ67430.1| integration host factor (IHF), DNA-binding protein, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 95 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 5 ITRSDLVKSISKEFGLSRKD-STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+SD V+ + K + + V + + + GE I+I +F ++ + R Sbjct: 1 MTKSDFVERLVKRLDSTDPEMIHEIVKRILQYMSEKLSEGERIEIRGLGSFSLRYRRPRT 60 Query: 64 GRNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94 RN +T VK+ + V+ FK L+ R+ Sbjct: 61 ARNPKTGDSGVKVKSKYVLHFKPGKKLRDRVN 92 >gi|325856433|ref|ZP_08172149.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|327312503|ref|YP_004327940.1| DNA-binding protein HU [Prevotella denticola F0289] gi|325483617|gb|EGC86589.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|326945422|gb|AEA21307.1| DNA-binding protein HU [Prevotella denticola F0289] Length = 92 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + I S + E + + F +F VK + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + Sbjct: 61 ARNISKNTTITIPAHNFPSFKPAKTFIE 88 >gi|257451488|ref|ZP_05616787.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|317058069|ref|ZP_07922554.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313683745|gb|EFS20580.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] Length = 92 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + ++ ++ ++ ++ + +T+ + + A+ E I S F F V +K R+ Sbjct: 1 MTKKEFIELYFRKGKFSTKTEAEKAMTSFLETLEEVALLNENILFSGFGKFEVVEKAERL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +EV+I ++ + FK L +++ + Sbjct: 61 GRNPKTGEEVRIPAKKSMKFKPGKSLDEKLNN 92 >gi|29346322|ref|NP_809825.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|253568257|ref|ZP_04845668.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298385676|ref|ZP_06995234.1| HimA protein [Bacteroides sp. 1_1_14] gi|29338217|gb|AAO76019.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|251842330|gb|EES70410.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298261817|gb|EFI04683.1| HimA protein [Bacteroides sp. 1_1_14] Length = 90 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++ G + KD++ +++L +++ G AI I F +F VK+K R+ Sbjct: 1 MNNKEFTSELADRLGYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + + P+ V+ ++ S+ LK + Sbjct: 61 INPSTKQRMLVPPKLVLTYRPSNTLKDK 88 >gi|15807733|ref|NP_285388.1| DNA-binding protein HB [Deinococcus radiodurans R1] gi|6460544|gb|AAF12250.1|AE001862_76 DNA-binding protein HB [Deinococcus radiodurans R1] Length = 137 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV+ ++ + GL++K S ++++ + + G+++ + T VK+ +R G Sbjct: 51 KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 110 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T+++++I + V FK +S LK Sbjct: 111 PGTSEKIQIPAGKKVAFKVASTLK 134 >gi|254443383|ref|ZP_05056859.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] gi|198257691|gb|EDY81999.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] Length = 104 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 1 MSKTITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS +T+ D+V I ++ + + V + I D+ G +++ +F F V+++ Sbjct: 1 MSNNLTKRDIVLRIFEKTKDIPQSKIQDTVQMTLDIILDALAEGRNVELRNFGVFEVQKR 60 Query: 60 GSRVGRNLQTNQE-VKIDPRRVVVFKASSILKKRIMD 95 +RVGRN + V I R VV FKA +LK +I D Sbjct: 61 KARVGRNPNRPETDVVIPTRAVVKFKAGKVLKAKIKD 97 >gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043] gi|315589541|gb|ADU48838.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043] Length = 228 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ G SR+ ++ + + + + +G + I+ F TF + +R G Sbjct: 1 MNKAELIGALEARLG-SRRVASDALEAVLDIVIREVAKGGKVGITGFGTFERANRAARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN +T VKI R+ F+A + K + + K Sbjct: 60 RNPKTGDTVKIKKTRIPKFRAGTNFKDIVSGQKKLAKTGS 99 >gi|307566168|ref|ZP_07628623.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307345133|gb|EFN90515.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 91 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ I+ GLS+ D+ + + I ++ V GE I++ F TF V ++ R G Sbjct: 1 MNKSELIDQIAANSGLSKADAKKALNATTEVIKNALVEGEKIQLVGFGTFSVNERPEREG 60 Query: 65 RNLQT 69 N T Sbjct: 61 INPST 65 >gi|325270174|ref|ZP_08136781.1| DNA-binding protein HU [Prevotella multiformis DSM 16608] gi|324987475|gb|EGC19451.1| DNA-binding protein HU [Prevotella multiformis DSM 16608] Length = 92 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + I S + E + + F +F VK + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + + Sbjct: 61 ARNISKNTTITIPAHNFPSFKPAKVFIE 88 >gi|160882775|ref|ZP_02063778.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483] gi|293373985|ref|ZP_06620326.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|299145603|ref|ZP_07038671.1| HimA protein [Bacteroides sp. 3_1_23] gi|156111799|gb|EDO13544.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483] gi|292631061|gb|EFF49698.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|298516094|gb|EFI39975.1| HimA protein [Bacteroides sp. 3_1_23] Length = 92 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD++ + +L + + G I I F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVIAIQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90 >gi|332826704|gb|EGJ99526.1| hypothetical protein HMPREF9455_04122 [Dysgonomonas gadei ATCC BAA-286] Length = 91 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + V + + + DS + E + + F +F VK + + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPAHSIPAFKPAKTF 85 >gi|260592146|ref|ZP_05857604.1| DNA-binding protein HU [Prevotella veroralis F0319] gi|260535780|gb|EEX18397.1| DNA-binding protein HU [Prevotella veroralis F0319] Length = 93 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+++KD + V + + I DS + + E + + F +F +K + + Sbjct: 1 MTKADIINEIATSTGIAKKDVSAVVESFMDSIKDSLLGKKENVYLRGFGSFIIKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + I FK + + Sbjct: 61 ARNISKNTTITIPAHDFPSFKPAKTFIE 88 >gi|256419934|ref|YP_003120587.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] gi|256034842|gb|ACU58386.1| histone family protein DNA-binding protein [Chitinophaga pinensis DSM 2588] Length = 89 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 38/67 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++K+ G+++ + + + + D+ +G + + F TF V ++ +R G Sbjct: 1 MNKAELIDKLAKDAGITKTQANEALDSFTKAVADTLKKGGKVTLVGFGTFSVSKRAARNG 60 Query: 65 RNLQTNQ 71 RN QT Q Sbjct: 61 RNPQTGQ 67 >gi|313676682|ref|YP_004054678.1| histone family protein DNA-binding protein [Marivirga tractuosa DSM 4126] gi|312943380|gb|ADR22570.1| histone family protein DNA-binding protein [Marivirga tractuosa DSM 4126] Length = 99 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS++ G+ + D T V F+ + DS GE I + F +F K++ ++ Sbjct: 1 MTKADVISEISEKTGIDKADVTATVEAFFSVVKDSMADGENIYVRGFGSFVNKKRAKKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N + ID V FK S + ++I + Sbjct: 61 RNISKNTAIVIDEHYVPSFKPSKVFVEKIKSSNK 94 >gi|317154852|ref|YP_004122900.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316945103|gb|ADU64154.1| histone family protein DNA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 95 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+T++ +V I + +R + V T+ + S + A+ +S F F K Sbjct: 1 MS-TLTKAGIVDYIYERTESNRAEIKDLVETILEIMKTSIKKDHALLVSGFGKFEAYDKR 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R GRN QT+Q + + PR+VVVF+ S + + Sbjct: 60 ARKGRNPQTSQTITLPPRKVVVFRLSRKFRSELN 93 >gi|124515663|gb|EAY57172.1| putative integration host factor, beta-subunit [Leptospirillum rubarum] gi|206602281|gb|EDZ38763.1| Putative integration host factor, beta-subunit [Leptospirillum sp. Group II '5-way CG'] Length = 98 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR DL+K I+++ G+S DS V LF + + GE+++I F F + + R+ Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T ++V + R+ ++F+ ILK R+ + R Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMKNLTR 95 >gi|115372447|ref|ZP_01459756.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310819508|ref|YP_003951866.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1] gi|115370660|gb|EAU69586.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309392580|gb|ADO70039.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1] Length = 89 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ ++ + L++K + + +F+ I + R F T+ V+ + +R Sbjct: 1 MTKAELVEVVAAQSRLTKKSAAEILDIVFSNIGKAVKRDARFSYPGFGTWSVRSRKARKI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QTN+ +K+ + + F+ + LK + Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >gi|94971969|ref|YP_594009.1| histone-like DNA-binding protein [Deinococcus geothermalis DSM 11300] gi|94554020|gb|ABF43935.1| histone-like protein DNA-binding protein [Deinococcus geothermalis DSM 11300] Length = 149 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 46/87 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV ++ + GL++K S V+ + + D+ +G+++ + T VK +R G Sbjct: 53 KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T++ ++I + V FK +S LK + Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139 >gi|332704460|ref|ZP_08424548.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332554609|gb|EGJ51653.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 185 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR +++ ++ L + + + + + + + G ++ I F +FHVK R Sbjct: 1 MTRQEIIDTLQTAADLPDKTTAGKALDAILESMTEELASGGSVLIRGFGSFHVKIVAERQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GR+ +TNQ + I R V F+ L++ + Sbjct: 61 GRDFKTNQPIHIPAYRTVKFEPGVELRQFV 90 >gi|226358227|ref|YP_002787966.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] gi|226319870|gb|ACO47864.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] Length = 125 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + ++ LV+ ++ GL++K S V+T+ I + G+++ + T VKQ + Sbjct: 34 SNKVAKTQLVEMVADRTGLTKKQSEEAVSTMLESIVGALREGKSVGMPGLGTLSVKQTAA 93 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R G T+++++I + V FK +S LK Sbjct: 94 RTGVRPGTSEKIQIPAGKKVAFKVASTLK 122 >gi|328552929|gb|AEB23421.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus amyloliquefaciens TA208] Length = 91 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 48/72 (66%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ +++++ G+++K++T V +FN I ++ +GE+IKI TF V+++ +R G Sbjct: 1 MNKTEFAGAVAEKLGVTKKEATPKVEAVFNVIVETLTKGESIKIPGVGTFEVRERAARKG 60 Query: 65 RNLQTNQEVKID 76 RN ++ +E+ I Sbjct: 61 RNPKSGEEIDIP 72 >gi|282877163|ref|ZP_06286001.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] gi|281300655|gb|EFA92986.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] Length = 92 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ IS GL +K+ V + + DS + E + + F +F +K + ++ Sbjct: 1 MTKADIINEISMSTGLQKKEVAAVVECFMSTVKDSLLEKRENVYLRGFGSFIIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 RN+Q N + ID + FK S Sbjct: 61 ARNIQKNTTITIDAHDLPSFKPSKSF 86 >gi|260910484|ref|ZP_05917153.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] gi|260635430|gb|EEX53451.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] Length = 90 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I+ GLS+ DS + + I + V+G+ +++ F TF V ++ + VG Sbjct: 1 MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKGALVKGDKVQLVGFGTFSVNERPAHVG 60 Query: 65 RNLQTNQEVKI 75 N T Q++ I Sbjct: 61 VNPATKQKITI 71 >gi|114799727|ref|YP_761164.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] gi|114739901|gb|ABI78026.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444] Length = 91 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T L +S+ + +K + V+ + + +G+ ++I+ V++ +R G Sbjct: 2 LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T +E+KI + V F+ S LK+R++ Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERVL 91 >gi|300727913|ref|ZP_07061291.1| DNA-binding protein HU [Prevotella bryantii B14] gi|299774755|gb|EFI71369.1| DNA-binding protein HU [Prevotella bryantii B14] Length = 94 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ +S++ G+S+K+ + V + + + S R E + + F +F +K + + Sbjct: 1 MTKADIIAEVSEQTGMSKKEVSAVVESFMDCVKLSLLERKENVYLRGFGSFVIKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 ARNISKNTTITIAAHDLPSFKPAKNF 86 >gi|325300776|ref|YP_004260692.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324320329|gb|ADY38219.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 176 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV I+ + G+ +KD + +L E+ +S +G+ I + F +F +K + + Sbjct: 1 MTKAELVNIIAIKTGIDKKDVMAIMESLMAEVKNSLGKGKHIYLRGFGSFIIKHRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N V + + FK + + Sbjct: 61 RNISQNTTVMVPAHNIPAFKPAMEFVNAVSK 91 >gi|308273400|emb|CBX30002.1| Integration host factor subunit alpha [uncultured Desulfobacterium sp.] Length = 94 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D+V + + G ++K S + +L I ++ G+ + IS F F VK+K R Sbjct: 2 ALTKNDIVARVHE-LGFTKKKSVDIIESLLMIIKNNLENGDDVLISGFGKFCVKKKSQRR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T ++ + RRVV FK S L+ +I + Sbjct: 61 GRNPATGSDLILRQRRVVTFKCSGKLRDKINKN 93 >gi|251771308|gb|EES51889.1| putative integration host factor, alpha subunit HimA like protein [Leptospirillum ferrodiazotrophum] Length = 104 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%) Query: 5 ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + R+D+V+ GL RK + + EI +S + GE++K++ F TF V+++ Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKA 85 R+GRN +T + + I +VVVF+ Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRP 84 >gi|119774748|ref|YP_927488.1| HU family DNA-binding protein [Shewanella amazonensis SB2B] gi|119767248|gb|ABL99818.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B] Length = 91 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L K I+ G+S+ ++ R + + I + GE + + F TF ++ R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + +++ FK + LK+ I Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLIAG 91 >gi|317484392|ref|ZP_07943308.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316924344|gb|EFV45514.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 50/96 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSKT+T++D+ KSI + + ++ + + + + + + + + +S F F K Sbjct: 1 MSKTVTKADIAKSICAQSEMKQQHAKKVLDAMLGIMKKALKEEKEMLLSGFGKFEAFTKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +R GRN QT +E+ +D V+ F+ S K + + Sbjct: 61 NRKGRNPQTGEEITLDSHDVLAFRISRKFKAAMNSE 96 >gi|225847908|ref|YP_002728071.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643424|gb|ACN98474.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] Length = 91 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 54/91 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ +++++ GL + + + V + ++ +GE + I F F+++++ R G Sbjct: 1 MTKKELISAVAQKAGLKKAAAEKAVNAAIETVVEAISKGERVAIPGFGIFNIRERKERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +E+KI R+VV F A+ LK+ + Sbjct: 61 RNPRTGKEIKIPARKVVAFTAAKALKEAVNK 91 >gi|304382113|ref|ZP_07364624.1| DNA-binding protein HU [Prevotella marshii DSM 16973] gi|304336711|gb|EFM02936.1| DNA-binding protein HU [Prevotella marshii DSM 16973] Length = 99 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ GL +KD + V I S + + E + + F +F VK + + Sbjct: 1 MTKADIINEIAATTGLPKKDVSTTVEAFMETIKQSLLDKRENVYLRGFGSFIVKHRAEKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN+ N + I FK + + M+G + ++D Sbjct: 61 ARNISKNTTITIAAHDFPGFKPAKSF----IQKMKGEEITEND 99 >gi|218264143|ref|ZP_03478035.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii DSM 18315] gi|218222261|gb|EEC94911.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii DSM 18315] Length = 99 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I+K+ G ++ V + + + G + + F +F +K + +V Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN+ N + I + FK S + K Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVNGKNNKDK 97 >gi|190571140|ref|YP_001975498.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018544|ref|ZP_03334352.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357412|emb|CAQ54846.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995495|gb|EEB56135.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 99 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 56/92 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ + + I++E GLS++DS + + +EI S + +KISSF TF VK K R Sbjct: 7 TVTKATIAECINQEIGLSKEDSIAIIDDILDEIKTSLAKDGIVKISSFGTFLVKNKKERP 66 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G +T++ V I R+ + F+ S ++KK I + Sbjct: 67 GNIPKTSERVVIKARKSISFRPSKMMKKLINN 98 >gi|328541581|ref|YP_004301691.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1] gi|326415720|gb|ADZ72782.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1] Length = 92 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ + V ++FN+I ++A G I SF F VK R GR Sbjct: 3 TTNEIADKIASEQNLTKTQAKAIVESVFNQIAEAAKAGAETSIPSFGKFKVKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92 >gi|251773075|gb|EES53631.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 84 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVR-GEAIKISSFATFHVKQKGSRVGRNLQTN 70 IS+ +++ + + I S + GE + + F TF ++ +R GRN +T Sbjct: 1 DKISQAAKINKTQANDALNAAVEAIKKSLKKDGERVTLPGFGTFSTAKRKARTGRNPRTG 60 Query: 71 QEVKIDPRRVVVFKASSILKKRIM 94 Q +KI RV F A K + Sbjct: 61 QAIKIPAMRVPKFTAGKAFKAAVK 84 >gi|258512944|ref|YP_003189201.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256634847|dbj|BAI00822.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256637902|dbj|BAI03870.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256640956|dbj|BAI06917.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256644011|dbj|BAI09965.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256647066|dbj|BAI13013.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256650119|dbj|BAI16059.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256653110|dbj|BAI19043.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656163|dbj|BAI22089.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] Length = 92 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + DL++ I +S+KD+ + T+F I ++A G+ I F F V+Q R G Sbjct: 1 MNNHDLIERIVATTDISKKDAKTALDTVFAAIIEAAAEGDDTAIPGFGKFVVRQTSERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN T E+ I R + F + +K + Sbjct: 61 RNPHTGAELVIPASRKLAFTPAKAVKDAL 89 >gi|311745198|ref|ZP_07718983.1| DNA-binding protein HU [Algoriphagus sp. PR1] gi|126577721|gb|EAZ81941.1| DNA-binding protein HU [Algoriphagus sp. PR1] Length = 102 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 53/102 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS + G+ + D T+ V F + DS GE I + F +F K++ ++ Sbjct: 1 MTKAEVITKISDKTGIQKDDVTQTVEAFFKVVKDSMSEGENIYVRGFGSFINKKRAKKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN+ N + ID + FK S + ++I + + ++ D Sbjct: 61 RNISKNTAIVIDEHYIPAFKPSKVFVEKIKNSKKIKELAPQD 102 >gi|291302449|ref|YP_003513727.1| histone family protein DNA-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571669|gb|ADD44634.1| histone family protein DNA-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 185 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + ++ + G RK + + + + EI + +GE + + F F +Q+ +R+ Sbjct: 1 MNKAEFIDALVEHLG-DRKTALKALDAMLEEIQRAVSKGEKVSFAGFGVFEKRQRAARMA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN +T + V++ V F+ K+ + + + K + Sbjct: 60 RNPRTGEAVRVKKTVVPAFRPGQGFKELVTGEKKMPKRS 98 >gi|313184943|gb|ADR50036.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184945|gb|ADR50037.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 3 KTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 T+T+SD+V IS L +K + F E+ + I+ SF TF V+ Sbjct: 7 PTVTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVR 66 Query: 58 QKGSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ R RN QT + VK+ V F+ LK+R+ Sbjct: 67 KRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|304372872|ref|YP_003856081.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1] gi|304309063|gb|ADM21543.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1] gi|330723543|gb|AEC45913.1| nucleoid DNA-binding protein [Mycoplasma hyorhinis MCLD] Length = 90 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 40/90 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I E L+ KD+ + + F+ + RG+ + I+ F TF K Sbjct: 1 MNKKELLDLIVDETQLTHKDTEAVLNSFFDIVTSQIKRGDKVVIAGFGTFQGVFKEQSTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T EV I + V FK S LK + Sbjct: 61 INPITKSEVNIPAKMVAKFKPSKNLKDMLK 90 >gi|325278965|ref|YP_004251507.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324310774|gb|ADY31327.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 95 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V IS+ G+ + V I +S V G+ + + F +F VK++ + Sbjct: 1 MTKADIVNEISRTTGIEKVAVQATVEAFMESIKNSVVEGKNVYLRGFGSFVVKKRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN+ N +KI + FK S + +++ Sbjct: 61 RNISKNVTIKIPEHFIPSFKPSKSFVNDVKGNVK 94 >gi|149199234|ref|ZP_01876272.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155] gi|149137659|gb|EDM26074.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155] Length = 100 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DLV I+ E L++++ V + I + G +++ +F F +K + R+G Sbjct: 1 MTKRDLVVRIADESKLNQQEVMNVVQKTLDYITNELAAGRNVELRNFGVFELKVRKQRIG 60 Query: 65 RNLQTNQ-EVKIDPRRVVVFKASSILKKRI 93 RN + EV I R VV FK+ ++K+++ Sbjct: 61 RNPNKPENEVPIPERVVVKFKSGKVMKEKV 90 >gi|257463524|ref|ZP_05627917.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|317061080|ref|ZP_07925565.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|313686756|gb|EFS23591.1| DNA-binding protein HU [Fusobacterium sp. D12] Length = 105 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + D + +K L ++ ++ + V N + ++ V G+ + F F + +R Sbjct: 1 MNKKDFIALFAKNAELKTKTEAEKLVAAFLNTVEETLVAGDGVAFMGFGKFETSVREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +++ + ++VV FKA L +++ Sbjct: 61 CVNPRTKEKMDVPAKKVVRFKAGKALAEKVN 91 >gi|323699317|ref|ZP_08111229.1| histone family protein DNA-binding protein [Desulfovibrio sp. ND132] gi|323459249|gb|EGB15114.1| histone family protein DNA-binding protein [Desulfovibrio desulfuricans ND132] Length = 94 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+T++ +V I + +R + V + + S + A+ IS F F K Sbjct: 1 MS-TLTKAGIVDYIYERTDKNRAEIKDLVEIILEIMKKSIKKDHALLISGFGKFEAYDKR 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R GRN QT Q + + PR+VVVF+ S + + Sbjct: 60 ARKGRNPQTTQTITLPPRKVVVFRLSRKFRAELN 93 >gi|332670429|ref|YP_004453437.1| histone family protein DNA-binding protein [Cellulomonas fimi ATCC 484] gi|332339467|gb|AEE46050.1| histone family protein DNA-binding protein [Cellulomonas fimi ATCC 484] Length = 93 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 47/92 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV++++ + G + ++ + + + + GE++ I F ++ +R Sbjct: 2 SVNRTELVQAVAAKAGTANAEADKVLKAFQEVLVEQLAAGESVTIPGFLAVSRAERSART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N QT ++++I V A S+LK+ + Sbjct: 62 GINPQTGEKLEIPAGYRVKLTAGSVLKRAVQG 93 >gi|108757022|ref|YP_629691.1| DNA-binding protein HU [Myxococcus xanthus DK 1622] gi|108460902|gb|ABF86087.1| DNA-binding protein HU [Myxococcus xanthus DK 1622] Length = 89 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LV+ ++ + L++K + + + +F I + + F T+ V+ + +R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN QTN+ +K+ + + F+ + LK + Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >gi|160886673|ref|ZP_02067676.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483] gi|298383516|ref|ZP_06993077.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|156107084|gb|EDO08829.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483] gi|298263120|gb|EFI05983.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 93 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + V + + +S V G + + F +F +K++ + Sbjct: 1 MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFVIKRRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N +KI + FK + + ++ Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKAFLNAVKEN 92 >gi|15639243|ref|NP_218692.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str. Nichols] gi|189025485|ref|YP_001933257.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14] gi|14194594|sp|O83278|DBH_TREPA RecName: Full=DNA-binding protein HU gi|3322519|gb|AAC65236.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str. Nichols] gi|189018060|gb|ACD70678.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14] Length = 105 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 49/95 (51%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 TRS +V ++ E LSR+ R V + + + + RGE +++ F F + + + VG+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +++T + V I VVVF+ S LK + G Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAVRGYRSGE 101 >gi|198283418|ref|YP_002219739.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667634|ref|YP_002426011.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247939|gb|ACH83532.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519847|gb|ACK80433.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 91 Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + V ++++ +S+ D+ + + + I F TF V +K +R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T QE+ I ++ + FKA ++ Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVN 90 >gi|58584918|ref|YP_198491.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419234|gb|AAW71249.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 102 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 57/92 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T++ + + I++E GLS++DS + + +EI S V+ +KISSF TF +K+K R Sbjct: 10 TVTKATIAEDINQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKERP 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G T+++V I R V F+ S ++KK I + Sbjct: 70 GNVPNTSKKVVIQARNSVSFRPSKVIKKLINN 101 >gi|269469081|gb|EEZ80634.1| histone family protein DNA-binding [uncultured SUP05 cluster bacterium] Length = 92 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ S+S LS+ D+ V + + GE +I F F+ K + +R+G Sbjct: 1 MKKTDLILSLSNNTDLSKTDAKVSVEVIIEALTKGIASGEGAEIRGFGGFYKKHRKARLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T++ ++ + V FK L++ + Sbjct: 61 INPKTSERTQVSEKFVPFFKPGKSLREVVN 90 >gi|91205964|ref|YP_538319.1| DNA-binding protein HU [Rickettsia bellii RML369-C] gi|157826672|ref|YP_001495736.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389] gi|91069508|gb|ABE05230.1| DNA-binding protein HU [Rickettsia bellii RML369-C] gi|157801976|gb|ABV78699.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389] Length = 108 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 9/102 (8%) Query: 3 KTITRSDLVKSISKEF---------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 K + +++ + +++ ++ D+ + + + I + ++ I+ F + Sbjct: 6 KKMNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGS 65 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 F ++ + SR GRN +T ++ I + VFKA S LK+ + Sbjct: 66 FGIQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNN 107 >gi|163785054|ref|ZP_02179777.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879681|gb|EDP73462.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1] Length = 97 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 5/95 (5%) Query: 5 ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRG---EAIKISSFATFHVKQK 59 +T+ D+V+ I +K+ L++KD V LF+ I + G + I+IS F TF VK++ Sbjct: 1 MTKIDIVEWILDNKDINLTKKDIKIIVDELFSLIENELKNGQDGKKIQISGFGTFFVKKR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 ++VGRN +TN+E + R V FK L I Sbjct: 61 KAKVGRNPRTNEEKIVPERLGVSFKPGKKLINEIN 95 >gi|189463459|ref|ZP_03012244.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM 17136] gi|265753811|ref|ZP_06089166.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189429888|gb|EDU98872.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM 17136] gi|263235525|gb|EEZ21049.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 93 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I+++ G+ ++ V + D+ + G + + F +F +KQ+ +V Sbjct: 1 MTKAEIVSRIAQQTGIEKEVVMTVVEAFMENVKDAMIAGNEVFLRGFGSFIIKQRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK + + + + Sbjct: 61 RNISKNTTIVIPAHSIPAFKPAKVFLNAVKEG 92 >gi|154490934|ref|ZP_02030875.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC 43184] gi|154088682|gb|EDN87726.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC 43184] Length = 90 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ISK G+ ++ V + + + S +GE + + F +F +K++ + Sbjct: 1 MTKADIVSEISKSTGIDKQTVLNSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I + FK + + Sbjct: 61 RNISKNTTIIIPEHNIPSFKPAKTFLNEVK 90 >gi|148274118|ref|YP_001223679.1| putative DNA-binding protein HU [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783357|ref|YP_001711691.1| DNA-binding protein HU [Clavibacter michiganensis subsp. sepedonicus] gi|147832048|emb|CAN03021.1| putative DNA-binding protein Hu [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157927|emb|CAQ03137.1| DNA-binding protein HU [Clavibacter michiganensis subsp. sepedonicus] Length = 95 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K++ R++LV +++ E G S+ + LF+ + + G + I + F + +R Sbjct: 4 KSLNRTELVAAVAAESGQSQAAVNGVLDALFSTVATNVADGVKVTIPGWVAFEQTARAAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + ++I + V A S LK + Sbjct: 64 TGRNPQTGEPLEIKASKGVKVSAGSKLKAAVK 95 >gi|116326536|ref|YP_796459.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|134093293|ref|YP_001098369.1| hypothetical protein pDB0R0p15 [Lactococcus lactis subsp. lactis bv. diacetylactis] gi|116108903|gb|ABJ74028.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|133712501|gb|ABO37108.1| unknown [Lactococcus lactis subsp. lactis bv. diacetylactis] Length = 103 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%) Query: 5 ITRSDLVKSISKEFG-------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 + + +L K+IS++ G L+ +S + V + I + V+ I++ F TF K Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + SR G N Q + ++I + V FKA LK+ + Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >gi|313185127|gb|ADR50128.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 3 KTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 TIT+SD+V IS L +K + F E+ + I+ SF TF V+ Sbjct: 7 PTITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVR 66 Query: 58 QKGSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ R RN QT + VK+ V F+ LK+R+ Sbjct: 67 KRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|53712845|ref|YP_098837.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60681069|ref|YP_211213.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis NCTC 9343] gi|253563170|ref|ZP_04840627.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] gi|255008357|ref|ZP_05280483.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis 3_1_12] gi|265762946|ref|ZP_06091514.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|313146081|ref|ZP_07808274.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|52215710|dbj|BAD48303.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60492503|emb|CAH07273.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis NCTC 9343] gi|251946946|gb|EES87228.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] gi|263255554|gb|EEZ26900.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|301162554|emb|CBW22101.1| putative histone-like DNA-binding protein HU1 [Bacteroides fragilis 638R] gi|313134848|gb|EFR52208.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 91 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + DS + E + + F +F VK++ + Sbjct: 1 MTKADIVNEIAKNTGVDKVTVLTTVEAFMDAVKDSLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|327312706|ref|YP_004328143.1| DNA-binding protein HU-beta [Prevotella denticola F0289] gi|326945003|gb|AEA20888.1| DNA-binding protein HU-beta [Prevotella denticola F0289] Length = 91 Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I + V G+ +++ F TF V ++ + G Sbjct: 1 MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHEG 60 Query: 65 RNLQTNQEVKI 75 N T Q+++I Sbjct: 61 INPATKQKIQI 71 >gi|255327422|ref|ZP_05368496.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC 25296] gi|255295702|gb|EET75045.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC 25296] Length = 94 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K R++LV ++++ G S+ + +F S +GE I I + + Sbjct: 1 MAK--NRTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT + ++I V A S LK + Sbjct: 59 ARTGRNPQTGETIQIPAGHGVKLTAGSKLKAAVAK 93 >gi|170741538|ref|YP_001770193.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] gi|168195812|gb|ACA17759.1| histone family protein DNA-binding protein [Methylobacterium sp. 4-46] Length = 102 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R+ L++ +++ L + V + + I ++ + G+ I++ F + +R Sbjct: 1 MLRAQLIQRVAELNPHLPYSQADAVVRAILDRITEALMEGDQIELRGFGALKTTAREARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V++ +R V F+AS + R+ Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMNGRLN 91 >gi|167753149|ref|ZP_02425276.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM 17216] gi|167659463|gb|EDS03593.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM 17216] Length = 90 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G + V I S + + + F +F VK++ +V Sbjct: 1 MTKADIVSEIAKSTGAEKVQVQAIVEAFMESIKGSLAQNNNVYLRGFGSFIVKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I + FK + ++ Sbjct: 61 RNISKNTTITIPAHNIPAFKPAKSFAAKVK 90 >gi|288928985|ref|ZP_06422831.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] gi|288329969|gb|EFC68554.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] Length = 90 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ I+ GLS+ DS + + I ++ V+G+ +++ F TF V ++ + G Sbjct: 1 MNKTDLIDKIAAGSGLSKADSKKALDATVAAIKETLVKGDKVQLVGFGTFSVNERPAHGG 60 Query: 65 RNLQTNQEVKI 75 N T +++ I Sbjct: 61 VNPATKEKITI 71 >gi|84498303|ref|ZP_00997100.1| Histone-like bacterial DNA-binding protein [Janibacter sp. HTCC2649] gi|84381803|gb|EAP97686.1| Histone-like bacterial DNA-binding protein [Janibacter sp. HTCC2649] Length = 235 Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ + K G SRK +T + + + I +G + I+ F TF ++ +R G Sbjct: 1 MNKGELVRELEKRLG-SRKAATEALDAVLDTIVREVTKGGKVGITGFGTFDRVERAARTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN + V+I + F+A + K + Sbjct: 60 RNPHSGASVRIPKSKAPRFRAGAAFKTYVKK 90 >gi|218261480|ref|ZP_03476291.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii DSM 18315] gi|218223998|gb|EEC96648.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii DSM 18315] Length = 90 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ISK G+ ++ V + + + S +GE + + F +F +K++ + Sbjct: 1 MTKADIVSEISKSTGIDKQTVLSSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I + FK + + Sbjct: 61 RNISKNTTIIIPEHNIPSFKPAKTFLNEVK 90 >gi|58979381|gb|AAW83355.1| DNA-binding protein HU [Campylobacter jejuni] Length = 98 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 50/97 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTTTDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R T + +K+ RV FK LK+ + +K Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 97 >gi|304382715|ref|ZP_07365207.1| integration host factor subunit alpha [Prevotella marshii DSM 16973] gi|304336166|gb|EFM02410.1| integration host factor subunit alpha [Prevotella marshii DSM 16973] Length = 96 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + D + +S+ G + +D+ + + TL + +CD GE + + F TF VK++ RV Sbjct: 1 MNNKDFITELSRRSGYTPEDTQKLIHTLIDGLCDGFDAGEPVVWAGFGTFEVKKRLERVI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q++ I P+ V+ FK S K+R+ Sbjct: 61 TNPSTGQKMLIPPKLVLNFKPVSSAKERLKKG 92 >gi|320008332|gb|ADW03182.1| histone family protein DNA-binding protein [Streptomyces flavogriseus ATCC 33331] Length = 218 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 1/107 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV++I+ + G R+ + V + + I + V G+ + ++ F +F + +R Sbjct: 1 MNKAQLVEAIADKVG-GRQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARYA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 RN QT + V++ V F+A K + + K + V Sbjct: 60 RNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKKLPKGGEVSVKKAP 106 >gi|167725689|ref|ZP_02408925.1| DNA-binding protein Hu-beta [Burkholderia pseudomallei DM98] Length = 69 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ +++K L++ + + V + + I + + +S F TF + + +R G Sbjct: 1 MNKSQLIDAVAKHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAARTG 60 Query: 65 RNLQTNQEV 73 RN T + + Sbjct: 61 RNPATGEAI 69 >gi|198277146|ref|ZP_03209677.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM 17135] gi|198269644|gb|EDY93914.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM 17135] Length = 91 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + + +S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEIAKNTGIDKATVLATLEAFMGSVKESLSKDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|197294717|ref|YP_001799258.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171854044|emb|CAM12017.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] Length = 94 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA---VRGEAIKISSFATFHVKQKGS 61 + D +K ++++ +S+K++ + + + I +S E + ++ F TF KQ+ + Sbjct: 1 MNTLDFLKILAEKHNVSQKEAAKILDSFVAAIYESVQSFEENEKLTLTGFGTFGAKQRTT 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 R G+N +T + + I ++V VFK S K Sbjct: 61 RQGKNPRTGETIDIPAKKVPVFKFSKNFKD 90 >gi|282878889|ref|ZP_06287653.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] gi|281298888|gb|EFA91293.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] Length = 95 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S+ G +++ + +V TL E+ + GE+I I SF TF VK++ R+ Sbjct: 1 MNNKEFIAELSRRAGYTQEQTQNYVRTLVEEMTNILGEGESIAIPSFGTFEVKKRMERIL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T +++ + P+ V+ F+ +K+++ Sbjct: 61 TNPSTGKKMLVPPKLVLSFRPMPSVKEQLKKG 92 >gi|119717520|ref|YP_924485.1| nucleoid protein Hbs [Nocardioides sp. JS614] gi|119538181|gb|ABL82798.1| bacterial nucleoid protein Hbs [Nocardioides sp. JS614] Length = 202 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 45/94 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+ + +++ + +RK + + ++ + I +GE + I+ F +F + + +R Sbjct: 1 MNKSEFIDALAARYEGNRKAAAHALESVLDTITREVAKGEKVAITGFGSFEKRVREARWV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN QT +K V F A + LK + + Sbjct: 61 RNPQTGARIKAKKTAVPKFTAGADLKNVVSGAKK 94 >gi|298377242|ref|ZP_06987195.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19] gi|298265656|gb|EFI07316.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19] Length = 91 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+S+ +E GL + V L + GE+I + F +F Q+ R+ Sbjct: 1 MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +EV I PR V FKA S L K + + Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91 >gi|150008609|ref|YP_001303352.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|255014407|ref|ZP_05286533.1| DNA-binding protein HU [Bacteroides sp. 2_1_7] gi|256841374|ref|ZP_05546881.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262383459|ref|ZP_06076595.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B] gi|298376095|ref|ZP_06986051.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|301309507|ref|ZP_07215449.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149937033|gb|ABR43730.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|256737217|gb|EEU50544.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262294357|gb|EEY82289.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B] gi|298267132|gb|EFI08789.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|300832596|gb|EFK63224.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 90 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 42/85 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V ISK G+ ++ V + + + S +GE + + F +F +K++ + Sbjct: 1 MTKADIVSEISKSTGIDKQTVLASVESFMDIVKSSLAQGENVYLRGFGSFVIKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPSFKPAKTF 85 >gi|260170244|ref|ZP_05756656.1| DNA-binding protein HU [Bacteroides sp. D2] Length = 90 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 44/88 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +++ G + KD++ + +L + + G + I F +F VK+K R+ Sbjct: 1 MNNKEFTSELAERLGYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 61 INPASKQRMLVPPKLVLSYRPSNTLKDK 88 >gi|254883542|ref|ZP_05256252.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|254836335|gb|EET16644.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] Length = 93 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + V + + +S V G + + F +F +K++ ++ Sbjct: 1 MTKAEIVAQISRQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKMA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N +KI + FK + + ++ Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKAFLNAVKEN 92 >gi|288802185|ref|ZP_06407625.1| HimA protein [Prevotella melaninogenica D18] gi|302346576|ref|YP_003814874.1| putative DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] gi|288335152|gb|EFC73587.1| HimA protein [Prevotella melaninogenica D18] gi|302151040|gb|ADK97301.1| putative DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] Length = 97 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +++ G ++ +S + V T+ + + S G+ + + F TF VK++ RV Sbjct: 1 MNNKEFIAALAARTGYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERVM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ FK ++ +K + Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGHVRKG 92 >gi|301308636|ref|ZP_07214588.1| putative virulence-associated protein [Bacteroides sp. 20_3] gi|300833160|gb|EFK63778.1| putative virulence-associated protein [Bacteroides sp. 20_3] Length = 91 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+S+ +E GL + V L + GE+I + F +F Q+ R+ Sbjct: 1 MNRGELVQSLVEETGLPKNVVRTVVNALPTVVAKGMREGESISMKGFGSFVPWQQSERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +EV I PR V FKA S L K + + Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91 >gi|14194634|sp|Q9RZ89|DBH_DEIRA RecName: Full=DNA-binding protein HU Length = 122 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 47/84 (55%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV+ ++ + GL++K S ++++ + + G+++ + T VK+ +R G Sbjct: 36 KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T+++++I + V FK +S LK Sbjct: 96 PGTSEKIQIPAGKKVAFKVASTLK 119 >gi|34556922|ref|NP_906737.1| putative DNA-binding protein II (HB) [Wolinella succinogenes DSM 1740] gi|34482637|emb|CAE09637.1| PUTATIVE DNA-BINDING PROTEIN II (HB) [Wolinella succinogenes] Length = 91 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KDS + ++ + ++ +G+++ F F ++ +R Sbjct: 1 MKKAEFIDAVALKAGLSKKDSELALDSILEVLTEALAQGKSVNFIGFGGFSTIERAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + T++ V + R V FK LK+ + Sbjct: 61 KVPGTDKVVDVPAVRAVKFKVGKQLKEAVAK 91 >gi|124007134|sp|Q1RHD4|DBH_RICBR RecName: Full=DNA-binding protein HU Length = 101 Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 47/100 (47%), Gaps = 9/100 (9%) Query: 5 ITRSDLVKSISKEF---------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 + +++ + +++ ++ D+ + + + I + ++ I+ F +F Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ + SR GRN +T ++ I + VFKA S LK+ + Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNN 100 >gi|302865832|ref|YP_003834469.1| histone family protein DNA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315502377|ref|YP_004081264.1| histone family protein DNA-binding protein [Micromonospora sp. L5] gi|302568691|gb|ADL44893.1| histone family protein DNA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315408996|gb|ADU07113.1| histone family protein DNA-binding protein [Micromonospora sp. L5] Length = 203 Score = 97.7 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+++++ G RK +T + + E+ + +GE + I+ F F + +G+R Sbjct: 1 MNKAELIEALAVRLG-DRKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ V F+A + K+ + Sbjct: 60 RNPRTGEAVKVKKTSVPTFRAGAGFKEMVASG 91 >gi|160886223|ref|ZP_02067226.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483] gi|237715013|ref|ZP_04545494.1| DNA-binding protein HU [Bacteroides sp. D1] gi|237723035|ref|ZP_04553516.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|255690595|ref|ZP_05414270.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|260173653|ref|ZP_05760065.1| DNA-binding protein HU [Bacteroides sp. D2] gi|262409038|ref|ZP_06085583.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|293372582|ref|ZP_06618964.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|294647093|ref|ZP_06724699.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294807153|ref|ZP_06765970.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|298481899|ref|ZP_07000089.1| DNA-binding protein HU [Bacteroides sp. D22] gi|299146728|ref|ZP_07039796.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|315921915|ref|ZP_07918155.1| DNA binding protein [Bacteroides sp. D2] gi|156108108|gb|EDO09853.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483] gi|229444846|gb|EEO50637.1| DNA-binding protein HU [Bacteroides sp. D1] gi|229447557|gb|EEO53348.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|260623864|gb|EEX46735.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|262353249|gb|EEZ02344.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|292632391|gb|EFF50987.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292637557|gb|EFF55969.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|294445653|gb|EFG14303.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|295087866|emb|CBK69389.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens XB1A] gi|298272121|gb|EFI13692.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298517219|gb|EFI41100.1| DNA-binding protein HU [Bacteroides sp. 3_1_23] gi|313695790|gb|EFS32625.1| DNA binding protein [Bacteroides sp. D2] Length = 91 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 41/85 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ ++ V + + DS E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKQTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|15607110|ref|NP_214492.1| integration host factor beta subunit [Aquifex aeolicus VF5] gi|2984363|gb|AAC07882.1| integration host factor beta subunit [Aquifex aeolicus VF5] Length = 100 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 52/98 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+SD+ K +++ G+S K + V F + + GE +++ TF +K+K R Sbjct: 1 MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 +N +T E+ + R V +K S +L+K++ D +C Sbjct: 61 KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREEC 98 >gi|325854393|ref|ZP_08171592.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|325484187|gb|EGC87121.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] Length = 97 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ +S + V T+ + S GE + IS F TF VK++ RV Sbjct: 1 MNNKEFIAELALRTGYTQDESQKMVRTVIEMMGKSFETGEPVSISGFGTFEVKKRLERVM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ FK ++ +K ++ Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAANIKGQVRKG 92 >gi|313185143|gb|ADR50136.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 3 KTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 TIT+SD+V IS L +K + F E+ + I+ SF TF V+ Sbjct: 7 PTITKSDIVDQISLNTKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVR 66 Query: 58 QKGSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ R RN QT + VK+ V F+ LK+R+ Sbjct: 67 KRKGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|293400638|ref|ZP_06644783.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305664|gb|EFE46908.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 94 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 44/75 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + LV+ ++++ +++KD+T V T+F EI + G + +S F F V ++ Sbjct: 1 MSEILNKKALVEVVAEKLEMTKKDATVAVDTVFEEITKTLADGGKVDLSGFGKFEVAERP 60 Query: 61 SRVGRNLQTNQEVKI 75 +R+G N T + + I Sbjct: 61 ARMGINPATKEPLPI 75 >gi|182414469|ref|YP_001819535.1| histone family protein DNA-binding protein [Opitutus terrae PB90-1] gi|177841683|gb|ACB75935.1| histone family protein DNA-binding protein [Opitutus terrae PB90-1] Length = 102 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS +T+ ++V I K+ G +K V + I + G +++ +F V+ + Sbjct: 1 MSTNLTKREIVLEIYKKTGFPQKQVVESVQLTLDIIQKALAEGRNVELRNFGVLEVQVRK 60 Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD 95 +R+GRN + EV I R VV FK+ ILK+++ Sbjct: 61 ARIGRNPNKPEAEVVIPQRAVVKFKSGKILKQQLKK 96 >gi|153808081|ref|ZP_01960749.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185] gi|149128984|gb|EDM20200.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185] Length = 91 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 40/85 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ + V + + DS E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKTTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|294673427|ref|YP_003574043.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294471958|gb|ADE81347.1| DNA-binding protein, HU family [Prevotella ruminicola 23] Length = 91 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T+++++ I++E GL++KD V I +S E + + F TF VK++ + Sbjct: 1 MTKAEIINRIAEETGLAKKDVAISVEAFMECIRESLASEKENVYLRGFGTFVVKRRAQKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I+ FK S +++ Sbjct: 61 ARNISKNTTLVIEAHDFPAFKPSKSFIEKMK 91 >gi|33152542|ref|NP_873895.1| integration host factor, alpha chain [Haemophilus ducreyi 35000HP] gi|71152153|sp|Q7VLG4|IHFA_HAEDU RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha gi|33148766|gb|AAP96284.1| integration host factor, alpha chain [Haemophilus ducreyi 35000HP] Length = 98 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 53/92 (57%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ + S+ ++G + + +FV F EI + G+ +K+S F F +++K +R Sbjct: 2 TLTKVEFTASLISKYGFDKSVAKQFVEQFFEEIRVALANGQEVKLSGFGNFSLRKKNARP 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T + V + RRVVVFK ++R+ + Sbjct: 62 GRNPKTGESVAVSARRVVVFKPGQKFRERVEN 93 >gi|269123561|ref|YP_003306138.1| histone family protein DNA-binding protein [Streptobacillus moniliformis DSM 12112] gi|268314887|gb|ACZ01261.1| histone family protein DNA-binding protein [Streptobacillus moniliformis DSM 12112] Length = 93 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 47/92 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ V+ +K G ++K S V + + V+GE ++ + +F V+++ R G Sbjct: 1 MSKKGFVEEYAKLTGETKKRSEELVNAFLETVENLVVKGEDVQFVGWGSFKVQERKEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N +T +E+KI ++V+ FK +++ Sbjct: 61 INPKTQKEIKIPAKKVLKFKVGKKFAEKVSKA 92 >gi|117928796|ref|YP_873347.1| histone family protein DNA-binding protein [Acidothermus cellulolyticus 11B] gi|117649259|gb|ABK53361.1| histone family protein DNA-binding protein [Acidothermus cellulolyticus 11B] Length = 163 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ G +K ++ V + + I + RGE + I+ F F ++ +R+ Sbjct: 1 MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN T + V++ V F+A + LK + ++ Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVVSGAIK 93 >gi|23006898|ref|ZP_00049004.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 80 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 31/69 (44%), Positives = 47/69 (68%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT+TR+DL +++ ++ GLSR +S V T+ EIC+ GE +K+SSF +F V+ KG Sbjct: 3 GKTVTRADLSEAVYQQVGLSRAESAALVETVLAEICNCLSSGETVKLSSFGSFVVRSKGK 62 Query: 62 RVGRNLQTN 70 R+GRN +T Sbjct: 63 RIGRNPKTG 71 >gi|262384433|ref|ZP_06077568.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|262294136|gb|EEY82069.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] Length = 91 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LV+S+ +E GL + V L + GE+I + F +F Q+ R+ Sbjct: 1 MNRGELVQSLVEETGLPKNVVRTVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T +EV I PR V FKA S L K + + Sbjct: 61 RNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91 >gi|147678826|ref|YP_001213041.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] gi|146274923|dbj|BAF60672.1| bacterial nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 92 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + D ++++ + ++ R + + I ++ +++ F F ++ + R Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GR+++T Q + I ++V+VFK L++ ++D Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAVLD 92 >gi|238752802|ref|ZP_04614270.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380] gi|238709000|gb|EEQ01250.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380] Length = 67 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + I +S G+ +++ F TF V + R GRN QT +E+KI V F + Sbjct: 1 MESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKA 60 Query: 89 LKKRIM 94 LK + Sbjct: 61 LKDSVK 66 >gi|332091766|gb|EGI96845.1| integration host factor subunit beta [Shigella dysenteriae 155-74] gi|332093460|gb|EGI98518.1| integration host factor subunit beta [Shigella boydii 3594-74] gi|332758997|gb|EGJ89307.1| integration host factor subunit beta [Shigella flexneri 4343-70] gi|332767859|gb|EGJ98049.1| ihfB [Shigella flexneri 2930-71] Length = 66 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + +GE I+I F +F + + R GRN +T +V+++ + V FK L+ Sbjct: 1 MLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRD 60 Query: 92 RIM 94 R Sbjct: 61 RAN 63 >gi|124514774|gb|EAY56286.1| putative integration host factor, alpha subunit HimA like [Leptospirillum rubarum] gi|206602432|gb|EDZ38913.1| putative integration host factor, alpha subunit HimA-like [Leptospirillum sp. Group II '5-way CG'] Length = 98 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDST---RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + R D+V+ I ++ SR + + + EI + GE +KI+ F TF V++ Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R GRN +T + V I V+F S L K Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91 >gi|255009783|ref|ZP_05281909.1| integration host factor, beta subunit [Bacteroides fragilis 3_1_12] gi|313147572|ref|ZP_07809765.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313136339|gb|EFR53699.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 97 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ +I++ +++ D + T F+ ++ G++I I F T K++ ++V Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ V + V FK K ++ + Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVNE 91 >gi|253570965|ref|ZP_04848373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|319644004|ref|ZP_07998563.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A] gi|251839914|gb|EES67997.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|313157143|gb|EFR56573.1| putative DNA-binding protein HU-alpha [Alistipes sp. HGB5] gi|317384352|gb|EFV65320.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A] Length = 93 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V IS++ G+ + + + + +S V G + + F +F +K++ + Sbjct: 1 MTKAEIVAQISRQSGIEKTVVMTVIESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N +KI + FK + + ++ Sbjct: 61 RNISKNTTIKIPAHNIPAFKPAKAFLNAVKEN 92 >gi|312889814|ref|ZP_07749360.1| histone family protein DNA-binding protein [Mucilaginibacter paludis DSM 18603] gi|311297740|gb|EFQ74863.1| histone family protein DNA-binding protein [Mucilaginibacter paludis DSM 18603] Length = 99 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 46/99 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS + G+ + D V F + S V GE + + F +F VK++ + Sbjct: 1 MTKAEIIAEISTKTGIEKIDVQETVEAFFKVVKTSMVGGENVYVRGFGSFVVKKRAKKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 RN+ N + I V FK + +++ + + Sbjct: 61 RNISKNTAIIIPEHFVPSFKPAKTFVEKVRTGNKVKAVK 99 >gi|58698807|ref|ZP_00373686.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|58534682|gb|EAL58802.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] Length = 115 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 54/91 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 +V I++E GLS++DS + + +EI S + +KISSF TF VK+K R G T Sbjct: 16 IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 +++V I R V F+ S I+K + + + +G+ Sbjct: 76 SEKVMIQARNSVSFRPSKIIKNQSIINEQGK 106 >gi|167763389|ref|ZP_02435516.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC 43183] gi|167698683|gb|EDS15262.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC 43183] Length = 109 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 17 KKMTKADIVNEITKNTGIDKVTVLATVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQK 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK + + Sbjct: 77 TARNISKNTTIIIPEHNIPAFKPAKTFTIAVKK 109 >gi|255011482|ref|ZP_05283608.1| putative DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313149304|ref|ZP_07811497.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313138071|gb|EFR55431.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 95 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS+E G+ RK + + D+ RG ++ + F TF +K++ ++ Sbjct: 1 MTKADIINRISEEQGIDRKTVALVIEGFMKCVKDALGRGRSVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 +N+Q + + I R+V FK S Sbjct: 61 QNIQQHITICIPTRKVPHFKPSESF 85 >gi|262067818|ref|ZP_06027430.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|291378542|gb|EFE86060.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] Length = 90 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 47/85 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +S++ G+ + ++ +F+ TL I + +GE + TF VK + + G Sbjct: 1 MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 N +T +++ I R+ V FKAS L Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNL 85 >gi|222480977|ref|YP_002567214.1| histone family protein DNA-binding protein [Halorubrum lacusprofundi ATCC 49239] gi|222453879|gb|ACM58144.1| histone family protein DNA-binding protein [Halorubrum lacusprofundi ATCC 49239] Length = 206 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%) Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKI-------SSFATFHVKQKGSRVGRNLQTNQ 71 GLS D+ + N + +G+ + + F TF + ++ +R GRN QT + Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183 Query: 72 EVKIDPRRVVVFKASSILKKRIM 94 E++I + VV FKA + L K + Sbjct: 184 EIQIAAKNVVKFKAGAELSKAVK 206 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 38/64 (59%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++S++ E GLS+ D+ R + T + + +G++ + F +F + ++ +R G Sbjct: 1 MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60 Query: 65 RNLQ 68 RN Sbjct: 61 RNPS 64 >gi|288800013|ref|ZP_06405472.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] gi|288333261|gb|EFC71740.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] Length = 97 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S++ +++ + + + + + + GE++ +S F TF VK++ R+ Sbjct: 1 MNNKEFITELSRQLEYTQEHTQGCIRCVIDAMSMAFDNGESVSVSGFGTFEVKKRLERIM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ V+ FK S+ +K+ + Sbjct: 61 VNPSTGQRMIVPPKLVLNFKPSASIKEELKKG 92 >gi|10954922|ref|NP_053342.1| hypothetical protein pTi-SAKURA_p104 [Agrobacterium tumefaciens] gi|41223342|ref|NP_396642.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58] gi|6498275|dbj|BAA87727.1| tiorf102 [Agrobacterium tumefaciens] gi|159141770|gb|AAK91083.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58] Length = 92 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ + V ++F +I D+A+ G I SF F +K R GR Sbjct: 3 TTNEIADKIAAEQSLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92 >gi|300727620|ref|ZP_07061009.1| HimA protein [Prevotella bryantii B14] gi|299775140|gb|EFI71743.1| HimA protein [Prevotella bryantii B14] Length = 103 Score = 96.5 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +++ G +++D+ + V T+ +E+ D + I I SF TF VK++ R+ Sbjct: 1 MNNKEFITELAQRSGYNQRDTQKLVRTVIDEMTDHFAETDIISIPSFGTFEVKKRLERIV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + + P+ V+ FK +K+++ + Sbjct: 61 VNPATKKRMLVPPKLVLGFKPVQSIKEQLKNA 92 >gi|107101236|ref|ZP_01365154.1| hypothetical protein PaerPA_01002269 [Pseudomonas aeruginosa PACS2] Length = 63 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + G+++ + F TF VK++ +R GRN QT + +KI ++ FKA LK Sbjct: 1 MIESVTGALKAGDSVVLVGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALKD 60 Query: 92 RIM 94 + Sbjct: 61 AVN 63 >gi|222108996|ref|YP_002551262.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84] gi|221727918|gb|ACM30968.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84] Length = 92 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + L++ + V ++F +I D+A+ G I SF F +K +R GR Sbjct: 3 TTNEIADKIAADQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAASKKLTFAPGKAVKDALNG 92 >gi|168699941|ref|ZP_02732218.1| probable DNA-binding protein HU [Gemmata obscuriglobus UQM 2246] Length = 167 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 9/101 (8%) Query: 5 ITRSDLVKSISKEFG---------LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 +T+ ++VK+I L++ + V F I ++ V I++ +F F Sbjct: 1 MTKKEIVKTICDRANKKNLIPKHNLTQLATKEIVQWTFEAIIETLVSEGRIELRNFGVFE 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 VKQ+ R RN +T V+++ + VV F+ +++++ Sbjct: 61 VKQRKPRKARNPRTGAAVEVEAKNVVTFQPGKTMEEQVKKS 101 >gi|325860232|ref|ZP_08173357.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A] gi|325482319|gb|EGC85327.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A] Length = 91 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 40/71 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ GLS+ D+ + + I + V G+ +++ F TF V ++ + G Sbjct: 1 MNKTELIEKIAAGAGLSKADAKKALDATTEAIKGALVVGDKVQLVGFGTFAVNERPAHEG 60 Query: 65 RNLQTNQEVKI 75 N T Q+++I Sbjct: 61 INPATKQKIQI 71 >gi|288818327|ref|YP_003432675.1| integration host factor alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288787727|dbj|BAI69474.1| integration host factor alpha subunit [Hydrogenobacter thermophilus TK-6] gi|308751924|gb|ADO45407.1| histone family protein DNA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 100 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Query: 5 ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TR +V + K GLS+K + +F++I + V G+ +KIS F TF V+ R Sbjct: 1 MTRKSIVDDLWKDGNSGLSKKTLYSIINYIFDQINQALVEGQEVKISGFGTFRVRHTKGR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 GRN +T + I P+R V K S L Sbjct: 61 RGRNPRTGEMRVIHPKRTVQLKPSKKL 87 >gi|145593811|ref|YP_001158108.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] gi|145303148|gb|ABP53730.1| histone family protein DNA-binding protein [Salinispora tropica CNB-440] Length = 237 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 49/94 (52%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L+++++ G RK ++ + + E+ + +GE + I+ F F + +G+R Sbjct: 16 EVVNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGAR 74 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ V F+ + K+ + Sbjct: 75 TARNPRTGEAVKVKKTSVPTFRPGTGFKEMVASG 108 >gi|15599135|ref|NP_252629.1| DNA binding protein [Pseudomonas aeruginosa PAO1] gi|107103457|ref|ZP_01367375.1| hypothetical protein PaerPA_01004527 [Pseudomonas aeruginosa PACS2] gi|116051980|ref|YP_789177.1| putative DNA binding protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218889778|ref|YP_002438642.1| putative DNA binding protein [Pseudomonas aeruginosa LESB58] gi|254236833|ref|ZP_04930156.1| hypothetical protein PACG_02853 [Pseudomonas aeruginosa C3719] gi|254242628|ref|ZP_04935950.1| hypothetical protein PA2G_03387 [Pseudomonas aeruginosa 2192] gi|296387535|ref|ZP_06877010.1| putative DNA binding protein [Pseudomonas aeruginosa PAb1] gi|313109375|ref|ZP_07795338.1| putative DNA binding protein [Pseudomonas aeruginosa 39016] gi|9950127|gb|AAG07327.1|AE004812_2 probable DNA binding protein [Pseudomonas aeruginosa PAO1] gi|14028721|gb|AAK52477.1|AF345630_1 histone-like protein HU form N [Pseudomonas aeruginosa PAO1] gi|115587201|gb|ABJ13216.1| histone-like protein HU form N [Pseudomonas aeruginosa UCBPP-PA14] gi|126168764|gb|EAZ54275.1| hypothetical protein PACG_02853 [Pseudomonas aeruginosa C3719] gi|126196006|gb|EAZ60069.1| hypothetical protein PA2G_03387 [Pseudomonas aeruginosa 2192] gi|218770001|emb|CAW25763.1| probable DNA binding protein [Pseudomonas aeruginosa LESB58] gi|310881840|gb|EFQ40434.1| putative DNA binding protein [Pseudomonas aeruginosa 39016] Length = 93 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L++ I++ + + L + D+ I + V ++ +R Sbjct: 2 ALTKDQLIQDIAEAIDAQKTTVRSALDQLAEIVKDALENDGEITLPGIGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT + ++I +RV F + L I Sbjct: 62 GRNPQTGKAIEIAAKRVAKFVPAKALTDAING 93 >gi|29346909|ref|NP_810412.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|253572374|ref|ZP_04849777.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298386444|ref|ZP_06996000.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|29338807|gb|AAO76606.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482] gi|251838149|gb|EES66237.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|298260821|gb|EFI03689.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 91 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ + V + DS E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKKTGIDKTTVLTTVEAFMEAVKDSLSNDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|194246520|ref|YP_002004159.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma mali] gi|193806877|emb|CAP18306.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma mali] Length = 96 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 46/87 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +K +S + + K+ + + + + I + ++ E I I+ F TF VK + R G Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 ++ +T + +KI +++ FK S K Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKD 87 >gi|1280573|gb|AAC73094.1| histone-like protein HBbu [Borrelia afzelii] Length = 108 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V I+ L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVWG 105 >gi|222083260|ref|YP_002542663.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221738640|gb|ACM39478.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L + + V ++F +I ++A+ G I SF F +K R GR Sbjct: 3 TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92 >gi|317476991|ref|ZP_07936233.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316906784|gb|EFV28496.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 90 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S+ G + KD++ VT+L +++ G I I F TF VK+K R+ Sbjct: 1 MNNKEFTSELSRRLGYTLKDTSELVTSLLSDMTRQLEEGNVISIQGFGTFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + + P+ V+ +K S++LK + Sbjct: 61 VNPTTKQRMLVPPKLVLTYKPSTLLKDK 88 >gi|325965076|ref|YP_004242982.1| bacterial nucleoid DNA-binding protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471163|gb|ADX74848.1| bacterial nucleoid DNA-binding protein [Arthrobacter phenanthrenivorans Sphe3] Length = 95 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV ++ + G S+ + LF S GE I I + + Sbjct: 1 MAK--NRSELVAEVAGKAGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT + ++I V A S LK + + Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKLKAAVSN 93 >gi|313159797|gb|EFR59153.1| DNA-binding protein HU [Alistipes sp. HGB5] Length = 90 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + I S + + F +F VK++ +V Sbjct: 1 MTKADIVSEIAKSTGVEKVQVQAIVEAFMDSIKTSLTNKNNVYLRGFGSFIVKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I + FK + ++ Sbjct: 61 RNISKNTTITIPEHNIPAFKPAKSFAAKVK 90 >gi|312116028|ref|YP_004013624.1| histone family protein DNA-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311221157|gb|ADP72525.1| histone family protein DNA-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 126 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 44/85 (51%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 L +++ GLS+K + ++ + I +G I+I+ T V+++ +R GRN Sbjct: 42 QLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRNPA 101 Query: 69 TNQEVKIDPRRVVVFKASSILKKRI 93 T + ++I + V F+A+ L + I Sbjct: 102 TGEAIEIKASKKVAFRAAKDLSESI 126 >gi|188997158|ref|YP_001931409.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237756500|ref|ZP_04585032.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense SS-5] gi|188932225|gb|ACD66855.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237691348|gb|EEP60424.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense SS-5] Length = 98 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSIS--KEFGLSRKDSTRFVTTLFNEICDSAV----RGEAIKISSFATFHVKQ 58 + R+D+V I+ ++ L +K+ V F+ I D G+ + IS F TF +K+ Sbjct: 1 MKRADIVNKIARNEKITLDKKEIATIVNETFDLISDYLTNDIHEGKKVMISGFGTFVIKK 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + S++GRN +T +E I R + FK +LKK++ Sbjct: 61 RKSKIGRNPKTGEEKLIPDRLGITFKPGKLLKKKVN 96 >gi|145629383|ref|ZP_01785181.1| integration host factor alpha-subunit [Haemophilus influenzae 22.1-21] gi|144978226|gb|EDJ87990.1| integration host factor alpha-subunit [Haemophilus influenzae 22.1-21] Length = 91 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ D+++ +S ++ LS++D+ V EI S G+ +K+S F F ++ K SR Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 64 GRNLQ 68 GRN + Sbjct: 63 GRNPK 67 >gi|70724874|ref|YP_257083.1| hypothetical protein pSG2GP_12 [Sodalis glossinidius] gi|85060469|ref|YP_456169.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans'] gi|68697091|emb|CAI59372.1| hypothetical protein pSG2.12 [Sodalis glossinidius] gi|68697121|emb|CAI59586.1| hypothetical protein pSG2.12 [Sodalis glossinidius] gi|84780989|dbj|BAE75764.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans'] Length = 78 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 37/66 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+ ++ ++ +++ + V+ I ++ GE++ +S F F VK++ R G Sbjct: 1 MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60 Query: 65 RNLQTN 70 RN QT Sbjct: 61 RNPQTG 66 >gi|327313608|ref|YP_004329045.1| DNA-binding protein HU [Prevotella denticola F0289] gi|326944716|gb|AEA20601.1| DNA-binding protein HU [Prevotella denticola F0289] Length = 97 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ +S + V T+ + S GE + IS F TF VK++ RV Sbjct: 1 MNNKEFIAELALRTGYTQDESLKMVRTVIEMMGKSFETGEPVSISGFGTFEVKKRLERVM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ FK ++ +K ++ Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAANIKGQVRKG 92 >gi|319956531|ref|YP_004167794.1| histone family protein DNA-binding protein [Nitratifractor salsuginis DSM 16511] gi|319418935|gb|ADV46045.1| histone family protein DNA-binding protein [Nitratifractor salsuginis DSM 16511] Length = 90 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D + ++++ GLS+KD+ + I ++ R E + F +F +K R Sbjct: 1 MKKTDFIAEVAQKSGLSKKDTEAVIDAALETITEALKRRENVSFLGFGSFQAVKKNEREI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 T ++VK+ + V FK +LK+ + Sbjct: 61 TIPGTTRKVKVPAKYSVRFKPGKLLKEAVE 90 >gi|294674943|ref|YP_003575559.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294472674|gb|ADE82063.1| DNA-binding protein, HU family [Prevotella ruminicola 23] Length = 90 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 41/71 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV+ I+ G+S+ D+ + + I D+ V+G+ + + F TF V ++ +R G Sbjct: 1 MNKTELVEKIAASAGISKVDAKKALDATVVAIKDALVKGDKVALVGFGTFSVNERPAREG 60 Query: 65 RNLQTNQEVKI 75 N T Q++ I Sbjct: 61 INPLTKQKITI 71 >gi|288928445|ref|ZP_06422292.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] gi|288331279|gb|EFC69863.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108] Length = 94 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ + G+ +KD + V + I S + + + + + F +F +K + ++ Sbjct: 1 MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK + + + + Sbjct: 61 ARNIAKNTTITIAAHDLPCFKPAKSFVESMRGE 93 >gi|281425615|ref|ZP_06256528.1| DNA-binding protein HU [Prevotella oris F0302] gi|299140821|ref|ZP_07033959.1| DNA-binding protein HU [Prevotella oris C735] gi|281400202|gb|EFB31033.1| DNA-binding protein HU [Prevotella oris F0302] gi|298577787|gb|EFI49655.1| DNA-binding protein HU [Prevotella oris C735] Length = 93 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+ ++D T V + I +S + E + + F +F +K + ++ Sbjct: 1 MTKADIINEIAMATGVQKRDVTVVVESFMETIKNSLLEKKENVYLRGFGSFVIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I+ + FK S +++ ++ Sbjct: 61 ARNILKNTTMTIEAHDLPSFKPSKSFIEQMKNE 93 >gi|220914453|ref|YP_002489762.1| histone family protein DNA-binding protein [Arthrobacter chlorophenolicus A6] gi|219861331|gb|ACL41673.1| histone family protein DNA-binding protein [Arthrobacter chlorophenolicus A6] Length = 95 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV ++ + G S+ + LF S GE I I + + Sbjct: 1 MAK--NRSELVAEVAGKAGTSQAAVNTVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT + ++I V A S LK + + Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKLKAAVSN 93 >gi|160915098|ref|ZP_02077311.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991] gi|158432897|gb|EDP11186.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991] Length = 94 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 45/75 (60%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + L +S++++ +++KD+ V T+F EI +G ++IS F F V ++ Sbjct: 1 MSEILNKKALAESLAEKLEMTKKDAGVAVDTVFEEITAILAKGGKVEISGFGKFEVAERP 60 Query: 61 SRVGRNLQTNQEVKI 75 R+G N T +++KI Sbjct: 61 ERMGINPATKEQIKI 75 >gi|260592453|ref|ZP_05857911.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella veroralis F0319] gi|260535499|gb|EEX18116.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella veroralis F0319] Length = 97 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ +S + V + +++ S G+A+ +S F TF VK++ RV Sbjct: 1 MNNKEFIAELASRTGHTQDESQKMVKAVIDQMAKSFETGDAVPVSGFGTFEVKKRLERVM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ FK ++ +K ++ Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGQVRKG 92 >gi|331703408|ref|YP_004400095.1| DNA binding protein HU [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383641|gb|ACU78211.1| DNA-binding protein HU [Mycoplasma mycoides subsp. capri str. GM12] gi|256384472|gb|ACU79041.1| DNA-binding protein HU [Mycoplasma mycoides subsp. capri str. GM12] gi|296455617|gb|ADH21852.1| DNA-binding protein HU [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801963|emb|CBW54117.1| DNA binding protein HU [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 90 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L++ I +S+ D+ + V +F I + G+ + ++ F F + ++ SR G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +++ I R FK + LK+ + Sbjct: 61 VNPSTGEKIVIPASRSARFKPAKQLKESL 89 >gi|116672458|ref|YP_833391.1| histone family protein DNA-binding protein [Arthrobacter sp. FB24] gi|116612567|gb|ABK05291.1| histone family protein DNA-binding protein [Arthrobacter sp. FB24] Length = 94 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV ++ + G S+ + LF S GE I I + + Sbjct: 1 MAK--NRSELVAEVAGKAGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R GRN QT + ++I V A S LK + Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKLKAAVSK 93 >gi|298374475|ref|ZP_06984433.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|298268843|gb|EFI10498.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] Length = 95 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LVK+++ + +++ ++ RFV ++ ++ + F TF ++ R+G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTFSAWEQTERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN + I R+ V FK +L K++ Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLN 90 >gi|91777072|ref|YP_546828.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT] gi|91711059|gb|ABE50987.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT] Length = 90 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+LV I K S + + L + + + RG + + V ++ +R G Sbjct: 1 MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + I+ ++ F A+ LK + Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVNG 90 >gi|46579547|ref|YP_010355.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|46448962|gb|AAS95614.1| DNA-binding protein HU, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311233363|gb|ADP86217.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 95 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSIS---KEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + R +LV ++ + G ++R+D R + + + G + + ++ Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R GRN +T + + I RRVV FKA L++ + Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >gi|15828558|ref|NP_325918.1| DNA-binding protein HU [Mycoplasma pulmonis UAB CTIP] gi|14089500|emb|CAC13260.1| DNA-BINDING PROTEIN HU [Mycoplasma pulmonis] Length = 126 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 49/92 (53%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KT+T+ + ++ IS+ +S++D + ++ I +S + E + I TF K K +R Sbjct: 34 KTMTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAAR 93 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G T +++ I +RVV FK + +K+ + Sbjct: 94 EGIKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125 >gi|330995026|ref|ZP_08318945.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] gi|329757915|gb|EGG74440.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] Length = 91 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ D+ + + L + +A G+ I + +F F V++ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTDTRKVLDALIEAMTAAAKAGDEITLPNFGKFKVREVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGATIQIAASRKLAFTPAKALKDSLND 91 >gi|42560949|ref|NP_975400.1| DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|83320061|ref|YP_424544.1| DNA-binding protein HU 1 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|42492446|emb|CAE77042.1| DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|83283947|gb|ABC01879.1| DNA-binding protein HU 1 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|301321355|gb|ADK69998.1| DNA-binding protein HU [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 90 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L++ I +S+ D+ + V +F I + G+ + ++ F F + ++ SR G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +++ I R FK + LK+ + Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89 >gi|261879346|ref|ZP_06005773.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] gi|270334049|gb|EFA44835.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] Length = 94 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA-IKISSFATFHVKQKGSRV 63 + ++ L+ +++ + +S+ ++ +V TL I D+ G+ + I F F +KQ R Sbjct: 1 MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 G N T + + I R V F AS L Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86 >gi|298480649|ref|ZP_06998845.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298273083|gb|EFI14648.1| DNA-binding protein HU [Bacteroides sp. D22] Length = 93 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 42/92 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L+ I+++ G+ + V + +S V G + + F +F +K++ RV Sbjct: 1 MTKAELITRIAQQSGIEKTIVMTVVEAFMENVKESMVAGNDVFLRGFGSFVIKRRAKRVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + + FK + + + Sbjct: 61 RNISENTTIVVPAHFFPAFKPAKTFLNAVKEG 92 >gi|218249932|ref|YP_002374755.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7] gi|223888785|ref|ZP_03623376.1| DNA-binding protein HU [Borrelia burgdorferi 64b] gi|226321550|ref|ZP_03797076.1| DNA-binding protein HU [Borrelia burgdorferi Bol26] gi|134104949|pdb|2NP2|A Chain A, Hbb-Dna Complex gi|134104950|pdb|2NP2|B Chain B, Hbb-Dna Complex gi|1280531|gb|AAC73070.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280535|gb|AAC73072.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1372991|gb|AAB41460.1| Hbb [Borrelia burgdorferi] gi|1372994|gb|AAB41461.1| Hbb [Borrelia burgdorferi] gi|73762240|gb|AAZ83608.1| Hbb [Borrelia burgdorferi] gi|89145706|gb|ABD62042.1| Hbb [Borrelia burgdorferi 297] gi|89145708|gb|ABD62043.1| Hbb [Borrelia burgdorferi] gi|218165120|gb|ACK75181.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7] gi|223885601|gb|EEF56700.1| DNA-binding protein HU [Borrelia burgdorferi 64b] gi|226232739|gb|EEH31492.1| DNA-binding protein HU [Borrelia burgdorferi Bol26] Length = 108 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V I+ L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|312131596|ref|YP_003998936.1| histone family protein DNA-binding protein [Leadbetterella byssophila DSM 17132] gi|311908142|gb|ADQ18583.1| histone family protein DNA-binding protein [Leadbetterella byssophila DSM 17132] Length = 96 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 45/93 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ IS++ G+ + ++ + F + + GEAI + F +F K++ + Sbjct: 1 MTKAEVISIISEKTGVDKAATSATIEAFFETVKEQLSGGEAIYVRGFGSFVNKKRAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 RN+ V + + FK S + + ++ Sbjct: 61 RNISKKTTVTVPAHYIPSFKPSKEFVEEVKKNV 93 >gi|262408098|ref|ZP_06084646.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22] gi|294809492|ref|ZP_06768195.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|298484174|ref|ZP_07002340.1| HimA protein [Bacteroides sp. D22] gi|262354906|gb|EEZ03998.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22] gi|294443310|gb|EFG12074.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|295084185|emb|CBK65708.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens XB1A] gi|298269678|gb|EFI11273.1| HimA protein [Bacteroides sp. D22] Length = 92 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD++ + +L + + G I + F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90 >gi|260912465|ref|ZP_05919002.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] gi|260633437|gb|EEX51590.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295] Length = 93 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ + G+ +KD + V + I S + + + + + F +F +K + ++ Sbjct: 1 MTKADIINEIAIQTGIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + I + FK + + + + Sbjct: 61 ARNIAKNTTITIAAHDLPCFKPAKSFVESMRGE 93 >gi|318606261|emb|CBY27759.1| integration host factor beta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 66 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + GE I+I F +F + + RVGRN +T +V+++ + V FK L+ Sbjct: 1 MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 60 Query: 92 RIM 94 R Sbjct: 61 RAN 63 >gi|163783706|ref|ZP_02178693.1| integration host factor beta subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881031|gb|EDP74548.1| integration host factor beta subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 94 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SD+ K I+K G+S++ + V +F + ++ RGE ++I TF +K+K SR Sbjct: 1 MKKSDITKEIAKRRGISQRKARIIVDQIFQAMAEALTRGEKVEIRGLGTFKIKKKPSRFV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 ++ +T E+ + R V FK ++K + R Sbjct: 61 KDPRTGVEIFVKERYVPTFKMGKLIKNHLNSKGR 94 >gi|296115319|ref|ZP_06833958.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295978142|gb|EFG84881.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 91 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 44/88 (50%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ D+ + + L + + +A G+ I + +F F VK+ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTDTRKVLDALIDTMTAAAKTGDEITLPNFGKFKVKEVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGATIQIAASRKLTFTPAKALKDSLND 91 >gi|330814088|ref|YP_004358327.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487183|gb|AEA81588.1| integration host factor alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 100 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Query: 1 MSK--TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 MSK ITR L + +E GLS+ + FV TLF+ + + + + +KI+ F TF K Sbjct: 1 MSKVENITRQKLYDLVFQELGLSKISCSAFVDTLFDSLIANLKKDKKVKIALFGTFSKKN 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 K SRVGRN +T +E I R VV FKAS +L K+I Sbjct: 61 KKSRVGRNPKTKEEKTISSRNVVTFKASKLLIKKIN 96 >gi|295085994|emb|CBK67517.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens XB1A] Length = 95 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ +S+E G+ R+ + + + D+ R ++ + F TF +K++ ++ Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 +N+Q + + I R+V FK S Sbjct: 61 QNIQQHTTICIPARKVPHFKPSESF 85 >gi|325300026|ref|YP_004259943.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324319579|gb|ADY37470.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 91 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++++V I++ G+ R+ + N + S E + + F +F VK++ + Sbjct: 1 MTKAEIVNEIARNTGIDRQTVLTTLEAFMNSVKTSLSNDENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|284988917|ref|YP_003407471.1| histone family protein DNA-binding protein [Geodermatophilus obscurus DSM 43160] gi|284062162|gb|ADB73100.1| histone family protein DNA-binding protein [Geodermatophilus obscurus DSM 43160] Length = 94 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV +I+K + +T L +E+ D+ RGE + +S T Q+ +R G Sbjct: 1 MNKAELVSAIAKRADVPTSTVDSVLTGLQDELVDAITRGEKVAVSGLLTVERTQRSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + + I V A S LKK Sbjct: 61 RNPQTGESIDIPAANTVKVTAGSNLKKA 88 >gi|146307673|ref|YP_001188138.1| histone family protein DNA-binding protein [Pseudomonas mendocina ymp] gi|145575874|gb|ABP85406.1| histone family protein DNA-binding protein [Pseudomonas mendocina ymp] Length = 92 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT+ L+ +++ L + + L + D+ I + V ++ +R Sbjct: 2 AITKDQLIGDLAEAVDLPKSTVRALLDQLGEIVSDALENDGEITLPGVGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + ++I ++VV + L + Sbjct: 62 GRNPQTGKAIEIAAKKVVKLVPAKALTDALN 92 >gi|298292191|ref|YP_003694130.1| histone family protein DNA-binding protein [Starkeya novella DSM 506] gi|296928702|gb|ADH89511.1| histone family protein DNA-binding protein [Starkeya novella DSM 506] Length = 92 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 48/90 (53%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+++LV +++++ L++ + V F+ I S GE +K+ F +F V + +R GR Sbjct: 3 TKNELVAAVAEQAKLTKAAAAAAVDATFDAIAASLKAGEEVKLIGFGSFSVVTRAAREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + VKI+ + F LK+ + Sbjct: 63 NPRTGKPVKIEASKAPKFTPGKGLKETVNG 92 >gi|282890554|ref|ZP_06299077.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499551|gb|EFB41847.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 102 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ SI++E + D + + + ++ GE ++ F F V ++ ++ Sbjct: 10 TMTKKKLINSIAQEKQIHPNDVRNVIQAFLDRMTEALAEGERLEFRDFGVFEVVERKQKI 69 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD 95 GRN + + I R V F ++K I Sbjct: 70 GRNPKNAAVPIIIPARSAVKFTPGKKMRKLIEK 102 >gi|291515896|emb|CBK65106.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 90 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V I S + + + F +F VK++ +V Sbjct: 1 MTKADIVSEIAKSTGVEKVQVQAIVEAFMESIKTSLTQKNNVYLRGFGSFIVKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ N + I + FK + ++ Sbjct: 61 RNISKNTTITIPEHNIPAFKPAKSFAAKVK 90 >gi|154250962|ref|YP_001411786.1| histone family DNA-binding protein [Parvibaculum lavamentivorans DS-1] gi|154154912|gb|ABS62129.1| histone family protein DNA-binding protein [Parvibaculum lavamentivorans DS-1] Length = 113 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 45/86 (52%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S L+ I+++ LS+K +T + + +G ++++ V+++ +R+GRN Sbjct: 28 SKLIAEIAEKHDLSKKAATELFSDFVELTVKNLKKGNKVRLTGLGILQVRKRAARMGRNP 87 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRI 93 T + +KI + V F+ + LK+ I Sbjct: 88 ATGEAIKIKASKKVAFRVAKDLKEAI 113 >gi|124007394|ref|ZP_01692101.1| DNA-binding protein HU [Microscilla marina ATCC 23134] gi|123987227|gb|EAY26967.1| DNA-binding protein HU [Microscilla marina ATCC 23134] Length = 105 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 52/102 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++++ I+++ G+ + V F I +S GE I + F +F K++ +++ Sbjct: 1 MTKAEVISEIAEKTGVEKDKVQITVEAFFKVIQNSMENGENIYVRGFGSFINKKRATKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 RN+ N+ + I V FK S + +RI + + + D+ Sbjct: 61 RNISKNKAMTIPEHYVPSFKPSKVFIERIKNSAKLKAKISDN 102 >gi|111115057|ref|YP_709675.1| hbbU protein [Borrelia afzelii PKo] gi|216263785|ref|ZP_03435779.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1] gi|3913406|sp|Q57220|DBH_BORAF RecName: Full=DNA-binding protein HBbu gi|1280571|gb|AAC73093.1| histone-like protein HBbu [Borrelia afzelii] gi|1280575|gb|AAC73095.1| histone-like protein HBbu [Borrelia afzelii] gi|1280577|gb|AAC73096.1| histone-like protein HBbu [Borrelia afzelii] gi|1280579|gb|AAC73097.1| histone-like protein HBbu [Borrelia afzelii] gi|1280581|gb|AAC73098.1| histone-like protein HBbu [Borrelia afzelii] gi|73762244|gb|AAZ83610.1| Hbb [Borrelia afzelii] gi|110890331|gb|ABH01499.1| hbbU protein [Borrelia afzelii PKo] gi|215979829|gb|EEC20651.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1] gi|313184941|gb|ADR50035.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184947|gb|ADR50038.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184949|gb|ADR50039.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184951|gb|ADR50040.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184953|gb|ADR50041.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184955|gb|ADR50042.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184957|gb|ADR50043.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184959|gb|ADR50044.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184961|gb|ADR50045.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184963|gb|ADR50046.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184965|gb|ADR50047.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184967|gb|ADR50048.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184969|gb|ADR50049.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184971|gb|ADR50050.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184973|gb|ADR50051.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184975|gb|ADR50052.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184977|gb|ADR50053.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|310817243|ref|YP_003965207.1| DNA-binding protein HU, form N [Ketogulonicigenium vulgare Y25] gi|308755978|gb|ADO43907.1| DNA-binding protein HU, form N [Ketogulonicigenium vulgare Y25] Length = 95 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 45/94 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ +T++ LV ++++ G +K + + L I D G A+ + F+ +++ Sbjct: 1 MANQMTKTQLVAALAEATGTDKKAAGAAIEALGKIITDEVAAGGAVTLPGVGKFYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +RV RN +TN+ + + V + LK + Sbjct: 61 ARVVRNPRTNESHEKPADKAVKVTVAKALKDSVN 94 >gi|312148159|gb|ADQ30818.1| DNA-binding protein HU [Borrelia burgdorferi JD1] Length = 108 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERVWG 105 >gi|325284314|ref|YP_004256854.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] gi|324316378|gb|ADY27491.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] Length = 128 Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 48/89 (53%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S + ++ L+ +S + GL+R+ ++ +L + + ++ G+ + + TF +K+ + Sbjct: 37 SGKMGKTALIAELSSKTGLTRQQASGVTDSLLSTVVEALQAGQTVSLPGLGTFSIKETAA 96 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R G T ++++I + V FK ++ LK Sbjct: 97 RTGVKPGTTEKIQIPAGKKVAFKVATGLK 125 >gi|319902105|ref|YP_004161833.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319417136|gb|ADV44247.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 90 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 47/88 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S++ G + KD++ V +L +++ G + + F TF VK+K R+ Sbjct: 1 MNNKEFTSELSRKLGYTLKDTSELVASLLSDMTRQLEEGNIVSVQGFGTFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + + P+ V+ +K S++LK + Sbjct: 61 VNPNTKQRMLVPPKLVLTYKPSTLLKDK 88 >gi|1280587|gb|AAC73092.1| histone-like protein HBbu [Borrelia burgdorferi] gi|89145738|gb|ABD62058.1| Hbb [Borrelia genomosp. 2] Length = 108 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|89145728|gb|ABD62053.1| Hbb [Borrelia californiensis] gi|89145730|gb|ABD62054.1| Hbb [Borrelia californiensis] gi|89145732|gb|ABD62055.1| Hbb [Borrelia californiensis] Length = 108 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + ++ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNSNLKLEKKYIRLVIDAFFEELKSNLCSNNVVEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + V++ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVRVLDHHVAYFRPGKDLKERVWG 105 >gi|220922907|ref|YP_002498209.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] gi|219947514|gb|ACL57906.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] Length = 113 Score = 95.4 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R+ L++ I++ L + V T+ + + ++ V+ E I + F TF +G+R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 G N +T + V + RR V F+AS+ + R+ D + G Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLNDKVGGA 96 >gi|224531945|ref|ZP_03672577.1| DNA-binding protein HU [Borrelia valaisiana VS116] gi|1280583|gb|AAC73090.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280585|gb|AAC73091.1| histone-like protein HBbu [Borrelia burgdorferi] gi|89145740|gb|ABD62059.1| Hbb [Borrelia valaisiana] gi|89145742|gb|ABD62060.1| Hbb [Borrelia valaisiana] gi|186966720|gb|ACC96221.1| histone-like protein HBbu [Borrelia sp. QSDS4] gi|186966722|gb|ACC96222.1| histone-like protein HBbu [Borrelia sp. QTMP2] gi|186966724|gb|ACC96223.1| histone-like protein HBbu [Borrelia sp. QSYSP4] gi|186966726|gb|ACC96224.1| histone-like protein HBbu [Borrelia sp. QSYSP3] gi|186966728|gb|ACC96225.1| histone-like protein HBbu [Borrelia sp. QLZSP1] gi|224511410|gb|EEF81816.1| DNA-binding protein HU [Borrelia valaisiana VS116] gi|313185123|gb|ADR50126.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185125|gb|ADR50127.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185129|gb|ADR50129.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185131|gb|ADR50130.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185133|gb|ADR50131.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185135|gb|ADR50132.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185137|gb|ADR50133.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185139|gb|ADR50134.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185141|gb|ADR50135.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185147|gb|ADR50138.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185149|gb|ADR50139.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|255693886|ref|ZP_05417561.1| HimA protein [Bacteroides finegoldii DSM 17565] gi|260620291|gb|EEX43162.1| HimA protein [Bacteroides finegoldii DSM 17565] Length = 90 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 43/88 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +++ G + KD++ + +L + G I + F +F VK+K R+ Sbjct: 1 MNNKEFTSELAERLGYTIKDTSELINSLLASMTQELEEGNMIAVQGFGSFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 61 INPASKQRMLVPPKLVLSYRPSNTLKDK 88 >gi|160889023|ref|ZP_02070026.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC 8492] gi|270293860|ref|ZP_06200062.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479304|ref|ZP_07938439.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|156861490|gb|EDO54921.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC 8492] gi|270275327|gb|EFA21187.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904592|gb|EFV26411.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 91 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKTTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|238763340|ref|ZP_04624304.1| Integration host factor subunit beta [Yersinia kristensenii ATCC 33638] gi|238698439|gb|EEP91192.1| Integration host factor subunit beta [Yersinia kristensenii ATCC 33638] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + + + GE I+I F +F + + RVGRN +T +V+++ + V FK Sbjct: 1 MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGDKVELEGKYVPHFKPGKE 60 Query: 89 LKKRIM 94 L+ R Sbjct: 61 LRDRAN 66 >gi|150006582|ref|YP_001301326.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|212691238|ref|ZP_03299366.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855] gi|237712330|ref|ZP_04542811.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|237726466|ref|ZP_04556947.1| DNA-binding protein HU [Bacteroides sp. D4] gi|254881516|ref|ZP_05254226.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|265752041|ref|ZP_06087834.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] gi|294775457|ref|ZP_06740970.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|319642901|ref|ZP_07997537.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] gi|149935006|gb|ABR41704.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482] gi|212666470|gb|EEB27042.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855] gi|229434992|gb|EEO45069.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4] gi|229453651|gb|EEO59372.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|254834309|gb|EET14618.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|263236833|gb|EEZ22303.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA] gi|294450698|gb|EFG19185.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|317385449|gb|EFV66392.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A] Length = 91 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 40/85 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + + + + DS + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTLEAFMDTVKDSLSKEENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|84514971|ref|ZP_01002334.1| DNA-binding protein HU [Loktanella vestfoldensis SKA53] gi|84511130|gb|EAQ07584.1| DNA-binding protein HU [Loktanella vestfoldensis SKA53] Length = 96 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 45/94 (47%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +T++ LV +I+ + G+ +K + + + I G A+ + + +++ Sbjct: 3 TKPMTKAQLVAAIADQTGMDKKAAGAALDAVTGIITSEVAGGGAVTLPGVGKIYCRERPE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K + +VV + LK + Sbjct: 63 RMVRNPATGEQIKKEADKVVKVTIAKALKDSVNG 96 >gi|160889558|ref|ZP_02070561.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC 8492] gi|270296682|ref|ZP_06202881.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480050|ref|ZP_07939162.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|156861075|gb|EDO54506.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC 8492] gi|270272669|gb|EFA18532.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903792|gb|EFV25634.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 90 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S+ G + KD++ V +L ++ G I I F TF VK+K R+ Sbjct: 1 MNNKEFTSELSRRLGYTLKDTSELVASLLADMTRQLEEGNIISIQGFGTFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N T Q + + P+ V+ +K S++LK + Sbjct: 61 VNPTTKQRMLVPPKLVLTYKPSTLLKDK 88 >gi|3913402|sp|Q45231|DBH_BORJA RecName: Full=DNA-binding protein HBbu gi|1280597|gb|AAC73099.1| histone-like protein HBbu [Borrelia japonica] gi|1280599|gb|AAC73100.1| histone-like protein HBbu [Borrelia japonica] gi|1280601|gb|AAC73101.1| histone-like protein HBbu [Borrelia japonica] gi|1280603|gb|AAC73102.1| histone-like protein HBbu [Borrelia japonica] gi|1280605|gb|AAC73103.1| histone-like protein HBbu [Borrelia japonica] Length = 108 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N Terminal Region Containing The Dimerization Domain And Dna Binding Domain Of Hu Protein(Histone Like Protein-Dna Binding) From Mycobacterium Tuberculosis [h37rv] gi|222447027|pdb|3C4I|B Chain B, Crystal Structure Analysis Of N Terminal Region Containing The Dimerization Domain And Dna Binding Domain Of Hu Protein(Histone Like Protein-Dna Binding) From Mycobacterium Tuberculosis [h37rv] Length = 99 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|58699046|ref|ZP_00373888.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225629912|ref|YP_002726703.1| DNA-binding protein, HU family [Wolbachia sp. wRi] gi|58534440|gb|EAL58597.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225591893|gb|ACN94912.1| DNA-binding protein, HU family [Wolbachia sp. wRi] Length = 101 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 51/86 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 +V I++E GLS++DS + + +EI S + +KISSF TF VK+K R G T Sbjct: 16 IVGDINQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 +++V I R V F+ S I+KK I + Sbjct: 76 SEKVMIQARNSVSFRPSKIIKKSINN 101 >gi|313664931|ref|YP_004046802.1| DNA-binding protein HU [Mycoplasma leachii PG50] gi|312949541|gb|ADR24137.1| DNA-binding protein HU [Mycoplasma leachii PG50] Length = 92 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ I E +S+K F I ++ + I I F F V QK SR G Sbjct: 1 MNKKELISEIVLETEVSKKTVNSIFDKTFELIAKILIKDKEISIPDFGKFVVLQKDSRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T +++ I + FK + LK+ + + Sbjct: 61 INPKTGEQIIIPASKTAKFKPAKKLKELLTE 91 >gi|268679600|ref|YP_003304031.1| histone family protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] gi|268617631|gb|ACZ11996.1| histone family protein DNA-binding protein [Sulfurospirillum deleyianum DSM 6946] Length = 92 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ ++++S++ GLS+KD+ + V I D+ V G+ + F TF + +R Sbjct: 1 MKKAEFIQAVSEKAGLSKKDTQKAVDAALEAISDALVAGKEVSFIGFGTFSTATRAARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R T++ V + V FK LK + Sbjct: 61 RVPGTDRVVDVAKTTAVKFKVGKKLKDVVAKA 92 >gi|163782099|ref|ZP_02177098.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1] gi|159882631|gb|EDP76136.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1] Length = 100 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDST----RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +T+ D+ I + + + V+ +F I ++ GE ++IS F TF VK + Sbjct: 1 MTKKDIASLIYGRCEEEFETTKKEIYQIVSEVFEIIEETLKNGEKVQISGFGTFLVKTRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKAS 86 ++GRN +T +EV + R+V+VFK S Sbjct: 61 GKIGRNPRTGEEVPVPDRKVIVFKPS 86 >gi|10955033|ref|NP_059689.1| hypothetical protein pTi_017 [Agrobacterium tumefaciens] gi|1163198|gb|AAC28112.1| hupT [Agrobacterium tumefaciens] Length = 92 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ + V ++F +I D+A+ G I SF F +K R GR Sbjct: 3 TTNEIADKIAAEQNLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAASKKLTFTLGKAVKDALNG 92 >gi|297516328|ref|ZP_06934714.1| transcriptional regulator HU subunit alpha [Escherichia coli OP50] Length = 63 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R G Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 Query: 65 RNL 67 RN Sbjct: 61 RNP 63 >gi|196232747|ref|ZP_03131598.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] gi|196223207|gb|EDY17726.1| histone family protein DNA-binding protein [Chthoniobacter flavus Ellin428] Length = 107 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ +LV IS E GL + V + I D+ +G+ +++ +F VK RV Sbjct: 3 TLTKRELVVKISNETGLVQHQVFDVVQRTLDHITDALAQGDTVELRNFGILEVKLTKPRV 62 Query: 64 GRNL-QTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN Q I R V FK+ I+++++ Sbjct: 63 GRNPNQPGSSFVIPARATVKFKSGKIMRQKVAK 95 >gi|238795852|ref|ZP_04639365.1| Integration host factor subunit beta [Yersinia mollaretii ATCC 43969] gi|238720315|gb|EEQ12118.1| Integration host factor subunit beta [Yersinia mollaretii ATCC 43969] Length = 69 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + + + GE I+I F +F + + RVGRN +T +V+++ + V FK Sbjct: 1 MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKE 60 Query: 89 LKKRIM 94 L+ R Sbjct: 61 LRDRAN 66 >gi|311896283|dbj|BAJ28691.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054] Length = 93 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++++ ++RKD+ + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALAERAEVTRKDADAVLAAFAEITGEVVAKGDEKVTIPGFLTFERTLRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIQIAEGFSVKVSAGSKLKEA 89 >gi|309775495|ref|ZP_07670496.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] gi|313897383|ref|ZP_07830926.1| DNA-binding protein HU 1 [Clostridium sp. HGF2] gi|308916753|gb|EFP62492.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53] gi|312957753|gb|EFR39378.1| DNA-binding protein HU 1 [Clostridium sp. HGF2] Length = 94 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 46/75 (61%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ + + LV+ ++++ +++KD+T V T+F+EI + G + IS F F + ++ Sbjct: 1 MSEILNKKALVEVVAEKLEMTKKDATVAVETVFDEIAKTLSEGGKVDISGFGKFEISERP 60 Query: 61 SRVGRNLQTNQEVKI 75 +R+G N T + ++I Sbjct: 61 ARMGINPATKEPLEI 75 >gi|237740573|ref|ZP_04571054.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] gi|262067567|ref|ZP_06027179.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|294782350|ref|ZP_06747676.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] gi|229422590|gb|EEO37637.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] gi|291378682|gb|EFE86200.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|294480991|gb|EFG28766.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] Length = 92 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + K + ++ +R ++ + V +F + + + GE I I ++ V ++ R+ Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN +T +EV I R+ V F+ +++ Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLNK 92 >gi|187918104|ref|YP_001883667.1| DNA-binding protein HbbU [Borrelia hermsii DAH] gi|119860952|gb|AAX16747.1| DNA-binding protein HbbU [Borrelia hermsii DAH] Length = 108 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K V F E+ +S I+ SF TF ++++ Sbjct: 9 VTKSDIVDQISLNIKNSNERLEKKYIRLVVDAFFEELKNSLCLNNIIEFRSFGTFELRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104 >gi|218887119|ref|YP_002436440.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758073|gb|ACL08972.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 95 Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+++ V ++ + +++ + + + + D G +++ F V ++ + Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN QT Q + I R+ V F A+ L + Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLNK 95 >gi|15594577|ref|NP_212366.1| hbbU protein [Borrelia burgdorferi B31] gi|195941414|ref|ZP_03086796.1| hbbU protein [Borrelia burgdorferi 80a] gi|216264191|ref|ZP_03436183.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a] gi|221217809|ref|ZP_03589277.1| DNA-binding protein HU [Borrelia burgdorferi 72a] gi|224532651|ref|ZP_03673272.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23] gi|224533805|ref|ZP_03674393.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a] gi|225549097|ref|ZP_03770072.1| DNA-binding protein HU [Borrelia burgdorferi 94a] gi|225550199|ref|ZP_03771159.1| DNA-binding protein HU [Borrelia burgdorferi 118a] gi|225552278|ref|ZP_03773218.1| DNA-binding protein HU [Borrelia sp. SV1] gi|226321207|ref|ZP_03796744.1| DNA-binding protein HU [Borrelia burgdorferi 29805] gi|3913407|sp|Q57267|DBH_BORBU RecName: Full=DNA-binding protein HU; AltName: Full=HBbu gi|1280537|gb|AAC73073.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280539|gb|AAC73074.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280541|gb|AAC73075.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280543|gb|AAC73076.1| histone-like protein HBbu [Borrelia burgdorferi] gi|2688124|gb|AAC66617.1| hbbU protein [Borrelia burgdorferi B31] gi|89145710|gb|ABD62044.1| Hbb [Borrelia burgdorferi] gi|89145712|gb|ABD62045.1| Hbb [Borrelia burgdorferi] gi|89145714|gb|ABD62046.1| Hbb [Borrelia burgdorferi] gi|89145716|gb|ABD62047.1| Hbb [Borrelia burgdorferi] gi|89145718|gb|ABD62048.1| Hbb [Borrelia burgdorferi] gi|89145720|gb|ABD62049.1| Hbb [Borrelia burgdorferi] gi|215980664|gb|EEC21471.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a] gi|221192486|gb|EEE18705.1| DNA-binding protein HU [Borrelia burgdorferi 72a] gi|224512431|gb|EEF82811.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23] gi|224513098|gb|EEF83461.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a] gi|225369311|gb|EEG98764.1| DNA-binding protein HU [Borrelia burgdorferi 118a] gi|225370323|gb|EEG99761.1| DNA-binding protein HU [Borrelia burgdorferi 94a] gi|225371276|gb|EEH00706.1| DNA-binding protein HU [Borrelia sp. SV1] gi|226233404|gb|EEH32148.1| DNA-binding protein HU [Borrelia burgdorferi 29805] gi|312149663|gb|ADQ29734.1| DNA-binding protein HU [Borrelia burgdorferi N40] gi|313185151|gb|ADR50140.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1588686|prf||2209287A hbb gene Length = 108 Score = 95.0 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|257451702|ref|ZP_05617001.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|257467010|ref|ZP_05631321.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|315918148|ref|ZP_07914388.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|317058261|ref|ZP_07922746.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313683937|gb|EFS20772.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313692023|gb|EFS28858.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] Length = 105 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + D + +K L ++ ++ + V N + ++ V G+ + F F + +R Sbjct: 1 MNKKDFIALFAKNAELKTKTEAEKLVAAFLNTVEETLVAGDGVAFMGFGKFETLVREART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T +++ + ++VV FKA L +++ Sbjct: 61 CVNPRTKEKMNVAAKKVVRFKAGKALAEKVN 91 >gi|238749769|ref|ZP_04611274.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380] gi|238712424|gb|EEQ04637.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + + + + GE I+I F +F + + RVGRN +T +V+++ + V FK Sbjct: 1 MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGTKVELEGKYVPHFKPGKE 60 Query: 89 LKKRIM 94 L+ R Sbjct: 61 LRDRAN 66 >gi|298384211|ref|ZP_06993771.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|298482997|ref|ZP_07001178.1| DNA-binding protein HU [Bacteroides sp. D22] gi|298262490|gb|EFI05354.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|298270741|gb|EFI12321.1| DNA-binding protein HU [Bacteroides sp. D22] gi|301165255|emb|CBW24826.1| Putative histone-like DNA-binding protein [Bacteroides fragilis 638R] Length = 95 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ +S+E G+ R+ + + + D+ R + + F TF +K++ ++ Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERIVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 +N+Q + + I R+V FK S Sbjct: 61 QNIQQHTTICIPARKVPHFKPSESF 85 >gi|329960937|ref|ZP_08299216.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328532223|gb|EGF59027.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 91 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|261415246|ref|YP_003248929.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371702|gb|ACX74447.1| histone family protein DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327669|gb|ADL26870.1| DNA-binding protein HU [Fibrobacter succinogenes subsp. succinogenes S85] Length = 100 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 3/100 (3%) Query: 5 ITRSDLVKSI--SKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + DL++++ +KE G+ S+ + R + + + I + +++ F TF VK + + Sbjct: 1 MNKQDLIEAVLANKEAGIESKAAAARAIDAVLDGIAAGIKKDGNVQLIGFGTFTVKSRAA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R GRN QT +KI + V FKA + LK+ + +K Sbjct: 61 RTGRNPQTGATIKIKASKTVGFKAGAALKETAAKNKPAKK 100 >gi|330897792|gb|EGH29211.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 63 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L+ +I+ + + + R + + + + G+++ + F TF V + +R+G Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 65 RNL 67 RN Sbjct: 61 RNP 63 >gi|313185145|gb|ADR50137.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|257456676|ref|ZP_05621869.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580] gi|257445943|gb|EEV20993.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580] Length = 112 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG- 64 T++ +V +I K+ KD F E+ + RGE I+I F TF V+ + R G Sbjct: 11 TKTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGM 70 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + V VVVF+ IL + Sbjct: 71 RNPKTGELVDTADHSVVVFRPGKILSAAV 99 >gi|218130464|ref|ZP_03459268.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM 20697] gi|317473947|ref|ZP_07933226.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|329954389|ref|ZP_08295481.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] gi|217987343|gb|EEC53673.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM 20697] gi|316909789|gb|EFV31464.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|328527657|gb|EGF54650.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] Length = 91 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK + + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTFTIAVKK 91 >gi|153011966|ref|YP_001373178.1| histone family protein DNA-binding protein [Ochrobactrum anthropi ATCC 49188] gi|151563854|gb|ABS17349.1| histone family protein DNA-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 92 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E LS+ + V ++F +I ++A+ G I SF F +K+ R GR Sbjct: 3 TTNEIADKIASEQNLSKVQAKAIVESVFRQITEAALAGAETSIPSFGKFKLKETPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAAAKKLAFTPGKAVKDALN 91 >gi|330984063|gb|EGH82166.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 90 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ ++ + G+ RKD + L I D + TF V ++ +R G Sbjct: 1 MTKKELIDALIAKSGVDRKDVEAVINALPETIKDEIRATGQSAVYGLGTFKVSERAARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 RN T ++I +VV K + L+ Sbjct: 61 RNPSTGAAIEIPASKVVSVKLTKDLR 86 >gi|170723403|ref|YP_001751091.1| histone family protein DNA-binding protein [Pseudomonas putida W619] gi|169761406|gb|ACA74722.1| histone family protein DNA-binding protein [Pseudomonas putida W619] Length = 93 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAESIAQPKATAKNALEQLGQIVADQLENGAEITLPGIGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++VV F + L I Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKSLTDAINK 93 >gi|255019397|ref|ZP_05291506.1| Integration host factor beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254971169|gb|EET28622.1| Integration host factor beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 71 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + D+ E I+I F +F + + + GRN +T + V + +RV FK L++ Sbjct: 1 MLDYLSDALRENERIEIRGFGSFSLHIRPEKQGRNPKTGEPVWVPEKRVPHFKPGKELRE 60 Query: 92 RI 93 ++ Sbjct: 61 QV 62 >gi|223940629|ref|ZP_03632472.1| histone family protein DNA-binding protein [bacterium Ellin514] gi|223890710|gb|EEF57228.1| histone family protein DNA-binding protein [bacterium Ellin514] Length = 119 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ DLV IS E GL ++ V + I ++ +G+ +++ +F F VK + +R+ Sbjct: 2 TMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKARI 61 Query: 64 GRNLQTNQE-VKIDPRRVVVFKASSILKKRI 93 GRN V I R VV FK ++ + Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMRAEV 92 >gi|317503236|ref|ZP_07961294.1| DNA-binding protein HU [Prevotella salivae DSM 15606] gi|315665649|gb|EFV05258.1| DNA-binding protein HU [Prevotella salivae DSM 15606] Length = 92 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ G+ ++D V + I +S + E + + F +F +K + ++ Sbjct: 1 MTKADIINEIAMTTGVQKRDVAVVVESFMETIKNSLLEKKENVYLRGFGSFVIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I+ + FK S +++ Sbjct: 61 ARNILKNTTMMIEAHDLPSFKPSKSFVEQMKK 92 >gi|224824984|ref|ZP_03698090.1| histone family protein DNA-binding protein [Lutiella nitroferrum 2002] gi|224602655|gb|EEG08832.1| histone family protein DNA-binding protein [Lutiella nitroferrum 2002] Length = 62 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + +G+ + + F TF+V ++ R GRN +T + I R F+A LK Sbjct: 1 MIAAVTGALKQGDTVTLVGFGTFYVGERAERTGRNPKTGDSITIPAARSPKFRAGKALKD 60 Query: 92 RI 93 + Sbjct: 61 AL 62 >gi|329889861|ref|ZP_08268204.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] gi|328845162|gb|EGF94726.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568] Length = 91 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + SDL I+ E G S+ D+ + V +F I D+A G I ++ F F VK +R G Sbjct: 1 MNNSDLADKIAAEHGTSKADARKIVDAVFAAIADAAAGGSEIALNGFGKFKVKDSPAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + +KI + + F + +K ++ Sbjct: 61 RNPATGETIKIAASKKLTFSPAKAVKDKLNG 91 >gi|189466527|ref|ZP_03015312.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM 17393] gi|224540249|ref|ZP_03680788.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus DSM 14838] gi|189434791|gb|EDV03776.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM 17393] gi|224518128|gb|EEF87233.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus DSM 14838] Length = 91 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMDTVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|104783417|ref|YP_609915.1| DNA-binding protein HU form N [Pseudomonas entomophila L48] gi|95112404|emb|CAK17131.1| DNA-binding protein HU form N [Pseudomonas entomophila L48] Length = 93 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAESIDAPKTTARAALEQLGQIVADQLENGAEITLPGIGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++VV F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKVLTDSINK 93 >gi|313185103|gb|ADR50116.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 LTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|257459443|ref|ZP_05624552.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268] gi|257442868|gb|EEV18002.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268] Length = 98 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++D ++ ++ + GLS+KD+ V + I + V+G+ I F +F + ++ +R G Sbjct: 1 MKKADFIQVVADKAGLSKKDTVNVVDSALEAIKELLVKGDDISFIGFGSFGIAERAAREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 + TN+ K +VV FK L Sbjct: 61 KVPGTNRTYKSPATKVVKFKVGKQL 85 >gi|330502968|ref|YP_004379837.1| histone family protein DNA-binding protein [Pseudomonas mendocina NK-01] gi|328917254|gb|AEB58085.1| histone family protein DNA-binding protein [Pseudomonas mendocina NK-01] Length = 92 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT+ L+ +++ L + + L + D+ I + V ++ +R Sbjct: 2 AITKDQLISDLAEAVSLPKATVRTLIDQLGEIVGDALENDGEITLPGIGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + ++I ++VV + L + Sbjct: 62 GRNPQTGKSIEIAAKKVVKLVPAKALTDALN 92 >gi|251772980|gb|EES53537.1| histone family protein DNA-binding protein [Leptospirillum ferrodiazotrophum] Length = 96 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ +LV+ ++++F G+ R+D+ + + + G+ +++ F V+ + R Sbjct: 1 MTKGELVQKLARQFPGIRREDARIMIDLFLESMKEGLREGDTVELRDFGVLRVRTRSERK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T V + ++V FK S ILK + Sbjct: 61 ARNPRTGTSVVVGSKKVPYFKQSRILKAMLK 91 >gi|255038180|ref|YP_003088801.1| histone family protein DNA-binding protein [Dyadobacter fermentans DSM 18053] gi|254950936|gb|ACT95636.1| histone family protein DNA-binding protein [Dyadobacter fermentans DSM 18053] Length = 101 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 52/100 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS++ G+ + D + + + F + DS GE + + F +F K++ +V Sbjct: 1 MTKADVIAQISEKTGVDKGDVQQTLESFFTVVKDSLSDGENLYVRGFGSFINKKRARKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN+ + ID V FK + + +++ + + + + Sbjct: 61 RNISKGTSMIIDEHFVPSFKPAKVFVEQVKESDKLKAVAE 100 >gi|313185099|gb|ADR50114.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|238063255|ref|ZP_04607964.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC 39149] gi|237885066|gb|EEP73894.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC 39149] Length = 241 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +++L+++++ G R+ +T + + E+ + +GE + I+ F F + +G+R Sbjct: 16 EVVNKAELIEALAVRLG-DRRTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGAR 74 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + VK+ V F+A + K+ + Sbjct: 75 TARNPRTGEAVKVKKTSVPTFRAGAGFKEMVASG 108 >gi|315637348|ref|ZP_07892566.1| DNA-binding protein HU [Arcobacter butzleri JV22] gi|315478391|gb|EFU69106.1| DNA-binding protein HU [Arcobacter butzleri JV22] Length = 91 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KD+ V + + I ++ V+ E++ F TF + +R Sbjct: 1 MNKAEFIDAVAAKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + T + V + V FK LK+ + Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAVAK 91 >gi|315121911|ref|YP_004062400.1| integration host factor, beta subunit [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495313|gb|ADR51912.1| integration host factor, beta subunit [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 105 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S L+ +I+K+ ++ +D + V L E+ + G ++I F TF V+++ +R+ Sbjct: 1 MIKSSLIYTIAKKNPQINHQDVEKMVNLLLEEMTKALANGGRVEIRGFGTFSVRKRSARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R + + + + V F++ LK+ + Sbjct: 61 ARAPLAQKVISVKEKMVPFFRSGKNLKECLN 91 >gi|153806286|ref|ZP_01958954.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185] gi|149130963|gb|EDM22169.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185] Length = 92 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 45/89 (50%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ + +++ G + KD+ + +L +++ G I + F +F VK+K R+ Sbjct: 2 TMNNKEFTSELAERLGYTIKDTAELIGSLLSDMVQELEEGNVIAVQGFGSFEVKKKAERI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ +K S+ LK + Sbjct: 62 SINPASKQRMLVPPKLVLSYKPSNTLKDK 90 >gi|1280545|gb|AAC73085.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280593|gb|AAC73106.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|260889058|ref|ZP_05900321.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] gi|260861118|gb|EEX75618.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] Length = 99 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 50/95 (52%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +++ + V + +K G ++K + V + V+GE+I+ + TF VK++ + Sbjct: 4 GDAMSKKEFVDAYAKATGETKKRAEELVNAFLGTAEEFLVKGESIQFVGWGTFEVKERAA 63 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN T + +KID ++VV FK L ++ D Sbjct: 64 REGRNPSTGKPIKIDAKKVVKFKVGKKLADKVADA 98 >gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186 [Mycobacterium tuberculosis SUMu004] gi|308333643|gb|EFP22494.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186 [Mycobacterium tuberculosis SUMu004] Length = 109 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|282858819|ref|ZP_06267964.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282588388|gb|EFB93548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 95 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 51/93 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ + G ++++S + VT++ EI S G+ ++I+ F TF +K++ RV Sbjct: 1 MNNKEFITKLASQTGFTQEESQKMVTSVLKEIGKSFELGDPVQITGFGTFDIKKRMERVM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N T + + P+ V+ FK +S +K I + Sbjct: 61 VNPATGLRMLVPPKLVLNFKPTSTIKTHIKKGV 93 >gi|296114688|ref|ZP_06833340.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295978784|gb|EFG85510.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 91 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ ++ + + L + +A G+ I + +F F VK+ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTETRKVLDALIETMTVAAKAGDEITLPNFGKFKVKEVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGATIQIAASRKLAFTPAKALKDSLND 91 >gi|253570783|ref|ZP_04848191.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] gi|251839732|gb|EES67815.1| DNA-binding protein HU [Bacteroides sp. 1_1_6] Length = 95 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 46/85 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ +S+E G+ R+ + + + D+ R ++ + F TF +K++ ++ Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 +N+Q + + I R++ FK S Sbjct: 61 QNIQQHTTICIPARKIPHFKPSESF 85 >gi|3913401|sp|Q44625|DBH_BORAD RecName: Full=DNA-binding protein HBbu gi|1280589|gb|AAC73108.1| histone-like protein HBbu [Borrelia andersonii] gi|89145722|gb|ABD62050.1| Hbb [Borrelia andersonii] gi|89145726|gb|ABD62052.1| Hbb [Borrelia andersonii] Length = 108 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|313185021|gb|ADR50075.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|262341299|ref|YP_003284154.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272636|gb|ACY40544.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 94 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I E G R D+ + + T +I S GE + + F +F +K + ++G Sbjct: 1 MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R++ ++ + I + FK + + + Sbjct: 61 RHISKDESIVIPAHNIPAFKPAKSFTELVKK 91 >gi|222080181|ref|YP_002540044.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221738826|gb|ACM39605.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + GL++ + V +F I D+A I F F VK R GR Sbjct: 3 TTNEIADKIAADNGLTKVQAKGIVEAVFQAIADAAGSDAETSIPGFGKFKVKASPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +++ + + + F + LK + Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALKDALNK 92 >gi|257125666|ref|YP_003163780.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] gi|257049605|gb|ACV38789.1| histone family protein DNA-binding protein [Leptotrichia buccalis C-1013-b] Length = 93 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 38/73 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + V + +K G ++K + V + V+GE I+ + TF VK++ +R G Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNAFLETAEEFLVKGENIQFVGWGTFEVKERAAREG 60 Query: 65 RNLQTNQEVKIDP 77 RN T ++I+ Sbjct: 61 RNPSTGDPIQIEA 73 >gi|58979383|gb|AAW83356.1| DNA-binding protein HU [Campylobacter coli] Length = 96 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+ + + I D +G+++ F TF ++ +R Sbjct: 1 MTKADFISQVAQTAGLTKKDAAAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAAREA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 R T + +K+ RV FK L Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNL 85 >gi|89145724|gb|ABD62051.1| Hbb [Borrelia andersonii] Length = 108 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ ++ I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKNNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|260911737|ref|ZP_05918313.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634162|gb|EEX52276.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 96 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++++ G ++ + V + +E+ G+ I I F TF VK++ RV Sbjct: 1 MNNKEFITELAQQTGYTQSVTQSLVRNIIDEMAVRFDEGDTISIPGFGTFEVKKRLERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ V+ F+ ++ +K+R+ + Sbjct: 61 VNPSTQQRMLVPPKLVLNFRPTASIKERLKNG 92 >gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium bovis] Length = 205 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|255080644|ref|XP_002503895.1| predicted protein [Micromonas sp. RCC299] gi|226519162|gb|ACO65153.1| predicted protein [Micromonas sp. RCC299] Length = 118 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT- 69 V ++ E G+S+K + + +L I + V GE + F +F + +R G N Q Sbjct: 33 VDLMASEAGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVNPQNP 92 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 Q++KI FKA S K + Sbjct: 93 TQKIKIPASMAPKFKAGSAFKSAVNK 118 >gi|89067289|ref|ZP_01154802.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516] gi|89046858|gb|EAR52912.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516] Length = 95 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 48/95 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K ++ + + N I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGSDKKTASAALDAVTNVITKEVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D +VV + LK + Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 95 >gi|160871772|ref|ZP_02061904.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella grylli] gi|159120571|gb|EDP45909.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella grylli] Length = 102 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++DL+ S+ +E LSR + + V F +I + +GE++KIS F + K R Sbjct: 4 LTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERP 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 GRN QT ++ R VV+F+AS Sbjct: 64 GRNPQTGVTTQVSSRNVVLFQAS 86 >gi|288799936|ref|ZP_06405395.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] gi|288333184|gb|EFC71663.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] Length = 93 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+ GL +KD + V +L I DS + + E + + F +F +K + ++ Sbjct: 1 MTKADIINEIALSTGLQKKDVSVVVESLMGTIKDSLLNKKENVYLRGFGSFTIKHRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN+ N + ID FK + +++ Sbjct: 61 ARNILKNTTMTIDAHDFPSFKPAKSFAEKMKQG 93 >gi|282881455|ref|ZP_06290129.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] gi|281304681|gb|EFA96767.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] Length = 95 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 48/94 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +++ G +++ + V L + + GEA+ I SF TF +K++ R+ Sbjct: 1 MNNKEFIAELAQRCGYTQEKTQNLVNILVEAMASNFDEGEAVSIPSFGTFEIKKRLERIL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N T + + + P+ V+ F+ + ++K+++ Sbjct: 61 VNPSTGKRMMVPPKLVLNFRPTPLVKEQLKKGGN 94 >gi|226329063|ref|ZP_03804581.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198] gi|225202249|gb|EEG84603.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198] Length = 66 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +G+ + + F TF V+ + +R GRN QT +E++I+ +V F+A LK + Sbjct: 12 KKGDDVALVGFGTFTVRDRAARTGRNPQTGKEIQIEAAKVPAFRAGKGLKDAVNQ 66 >gi|302344202|ref|YP_003808731.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301640815|gb|ADK86137.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 95 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 47/93 (50%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K +T+++++ I+ + +S++ + + D + G I+++ TF +K+ Sbjct: 3 GKPMTKAEMIDKIASKADISKRAAKDALEAFVEICRDEVMAGGTIRVAGLGTFSLKESAP 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R G N T + ++I ++ + FK S+ ++ + Sbjct: 63 RQGVNPATRKPIEITAKKRMAFKMSAQVRDMLN 95 >gi|171318736|ref|ZP_02907877.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] gi|171096052|gb|EDT40980.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] Length = 91 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ +++ +S+ ++ + V + I + RGE++++ F F +Q+ +R Sbjct: 1 MNKQELIDAVAASADVSKAEAAKSVHAALDVIVGAVSRGESVQLIGFGAFSQRQRAARTR 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN T E+ I V F A K + Sbjct: 61 RNPATGAEIAIPDANTV-FTAGKAFKDAVN 89 >gi|3228564|gb|AAD03319.1| histone-like protein HLm [Listeria monocytogenes] Length = 83 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++DLV S+++ LS+K + L++++ + F F V+++ +R GR Sbjct: 3 NKTDLVNSVAELADLSKKTQRK--QQLYSKLFKLLH------LLGFGNFEVRERAARKGR 54 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +E+ I +V FK LK+ + Sbjct: 55 NPATKEEIDIPASKVPAFKPGKALKEAVK 83 >gi|281421498|ref|ZP_06252497.1| DNA-binding protein HU-beta [Prevotella copri DSM 18205] gi|281404570|gb|EFB35250.1| DNA-binding protein HU-beta [Prevotella copri DSM 18205] Length = 91 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 39/71 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ +++ + + N + ++ + G+ I++ F TF + ++ +R G Sbjct: 1 MNKTELIDKIAAGAEITKAQAKAALEATTNALKEALIAGDKIQLVGFGTFSINERPAREG 60 Query: 65 RNLQTNQEVKI 75 N T ++++I Sbjct: 61 INPATKEKIQI 71 >gi|26987711|ref|NP_743136.1| histone family protein DNA-binding protein [Pseudomonas putida KT2440] gi|148546256|ref|YP_001266358.1| histone family protein DNA-binding protein [Pseudomonas putida F1] gi|167031996|ref|YP_001667227.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] gi|325278215|ref|ZP_08143708.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] gi|14028719|gb|AAK52476.1|AF345629_1 histone-like protein HU form N [Pseudomonas putida] gi|24982398|gb|AAN66600.1|AE016287_11 DNA-binding protein HU, form N [Pseudomonas putida KT2440] gi|148510314|gb|ABQ77174.1| histone family protein DNA-binding protein [Pseudomonas putida F1] gi|166858484|gb|ABY96891.1| histone family protein DNA-binding protein [Pseudomonas putida GB-1] gi|313497342|gb|ADR58708.1| HupN [Pseudomonas putida BIRD-1] gi|324096655|gb|EGB95008.1| histone family protein DNA-binding protein [Pseudomonas sp. TJI-51] Length = 93 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAESIAAPKATAKNALEQLGQIVADQLENGAEITLPGIGKLKVSERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++VV F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKVLTDAINK 93 >gi|307565346|ref|ZP_07627839.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307346015|gb|EFN91359.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 96 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 50/92 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S + G ++++S + V TL +E+ S G+ I+IS F +F +K++ R+ Sbjct: 1 MNNKEFIAKLSNQMGFTQEESQKCVKTLLDEMGKSFELGKPIQISGFGSFDIKKRMERII 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ FK ++ +K I Sbjct: 61 VNPATGVRMLVPPKLVLSFKPTNTIKAHIKKG 92 >gi|319902742|ref|YP_004162470.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319417773|gb|ADV44884.1| histone family protein DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 91 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K G+ + V + S + E + + F +F VK++ + Sbjct: 1 MTKADIVNEITKNTGIDKVTVLTTVEAFMEAVKASLSKDENVYLRGFGSFVVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK + Sbjct: 61 RNISKNTTIIIPEHNIPAFKPAKTF 85 >gi|323345437|ref|ZP_08085660.1| DNA-binding protein HU [Prevotella oralis ATCC 33269] gi|323093551|gb|EFZ36129.1| DNA-binding protein HU [Prevotella oralis ATCC 33269] Length = 129 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSR 62 +T++D++ I+ G+ +K+ + + + + +S R E + + F +F +K + ++ Sbjct: 37 AMTKADIINEIANSTGMQKKEVAVVIESFMSTVKESLLKRKENVYLRGFGSFIIKHRAAK 96 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I+ + FK + Sbjct: 97 TARNILKNTTMTIEAHDLPSFKPAKSF 123 >gi|145224804|ref|YP_001135482.1| histone family protein DNA-binding protein [Mycobacterium gilvum PYR-GCK] gi|315445134|ref|YP_004078013.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1] gi|145217290|gb|ABP46694.1| bacterial nucleoid protein Hbs [Mycobacterium gilvum PYR-GCK] gi|315263437|gb|ADU00179.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1] Length = 217 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQK 94 >gi|157737565|ref|YP_001490248.1| DNA-binding protein HU [Arcobacter butzleri RM4018] gi|157699419|gb|ABV67579.1| DNA-binding protein HU [Arcobacter butzleri RM4018] Length = 91 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KD+ V + + I ++ V+ E++ F TF + +R Sbjct: 1 MNKAEFIDAVATKAGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + T + V + V FK LK+ + Sbjct: 61 KVPGTTKTVDVPATTVAKFKVGKALKEAVAK 91 >gi|219684742|ref|ZP_03539685.1| DNA-binding protein HU [Borrelia garinii PBr] gi|219672104|gb|EED29158.1| DNA-binding protein HU [Borrelia garinii PBr] gi|313185033|gb|ADR50081.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|203284151|ref|YP_002221891.1| HbbU protein [Borrelia duttonii Ly] gi|203287689|ref|YP_002222704.1| HbbU protein [Borrelia recurrentis A1] gi|201083594|gb|ACH93185.1| HbbU protein [Borrelia duttonii Ly] gi|201084909|gb|ACH94483.1| HbbU protein [Borrelia recurrentis A1] Length = 108 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V I L +K V F E+ +S I+ SF TF ++++ Sbjct: 9 VTKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVW 104 >gi|1280595|gb|AAC73107.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF ++++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFELRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|119953028|ref|YP_945237.1| DNA-binding protein HbbU [Borrelia turicatae 91E135] gi|119861799|gb|AAX17567.1| DNA-binding protein HbbU [Borrelia turicatae 91E135] Length = 108 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K V F E+ +S I+ SF TF ++++ Sbjct: 9 VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVWG 105 >gi|237716500|ref|ZP_04546981.1| DNA-binding protein HU [Bacteroides sp. D1] gi|237720681|ref|ZP_04551162.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|294645092|ref|ZP_06722818.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|229444147|gb|EEO49938.1| DNA-binding protein HU [Bacteroides sp. D1] gi|229449516|gb|EEO55307.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|292639598|gb|EFF57890.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] Length = 90 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 44/88 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +++ G + KD++ + +L + + G I + F +F VK+K R+ Sbjct: 1 MNNKEFTSELAERLGYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N + Q + + P+ V+ ++ S+ LK + Sbjct: 61 INPASKQRMLVPPKLVLSYRPSNTLKDK 88 >gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacterium avium 104] gi|118166892|gb|ABK67789.1| DNA-binding protein HU [Mycobacterium avium 104] Length = 217 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 6 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 65 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 66 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 99 >gi|110640053|ref|YP_680263.1| DNA-binding protein HU [Cytophaga hutchinsonii ATCC 33406] gi|110282734|gb|ABG60920.1| DNA-binding protein HU [Cytophaga hutchinsonii ATCC 33406] Length = 110 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 45/87 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I+++ G+ + D T V F + DS G I + F +F K++ +V Sbjct: 1 MTKADVINEIAEKTGIDKADVTTTVEAFFKVVKDSMSEGHNIYVRGFGSFINKKRARKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN+ N + ID + FK + + + Sbjct: 61 RNISKNTAIIIDEHYIPSFKPAKVFVE 87 >gi|313184981|gb|ADR50055.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|313665448|ref|YP_004047319.1| DNA-binding protein HU [Mycoplasma leachii PG50] gi|312949333|gb|ADR23929.1| DNA-binding protein HU [Mycoplasma leachii PG50] Length = 90 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 46/89 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L++ I +S+ D+ + V +F I + G+ + ++ F F + ++ SR G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N T +++ I R FK + LK+ + Sbjct: 61 VNPSTGEKIIIPDSRSARFKPAKQLKESL 89 >gi|1280591|gb|AAC73105.1| histone-like protein HBbu [Borrelia burgdorferi DN127] Length = 108 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 RGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobacterium abscessus ATCC 19977] gi|169242340|emb|CAM63368.1| DNA-binding protein HU homolog (Histone-like) [Mycobacterium abscessus] Length = 207 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVEHVVDTIVRTVHKGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + + Sbjct: 61 RNPRTGETVKVKPTSVPTFRPGAQFKAVVSGAQK 94 >gi|330992041|ref|ZP_08315990.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] gi|329761062|gb|EGG77557.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1] Length = 91 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 43/88 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +DLV I+ S+ D+ + + L + +A G+ I + +F F VK+ +R GRN Sbjct: 4 ADLVDHIATTTDTSKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVKEVAAREGRNP 63 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 T ++I R + F + LK + D Sbjct: 64 ATGAAIQIAASRKLAFTPAKALKDSLND 91 >gi|288927531|ref|ZP_06421378.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp. oral taxon 317 str. F0108] gi|288330365|gb|EFC68949.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp. oral taxon 317 str. F0108] Length = 96 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++++ G ++ + V + +E+ G+ + I F TF VK++ RV Sbjct: 1 MNNKEFITELAQQTGYTQNVTQTLVRNVIDEMAVRFDEGDVVSIPGFGTFEVKKRLERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ V+ F+ ++ +K+R+ + Sbjct: 61 VNPATQQRMLVPPKLVLNFRPTASIKERLKNG 92 >gi|261879549|ref|ZP_06005976.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] gi|270333775|gb|EFA44561.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] Length = 92 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 50/91 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ G ++ D+ + VT L E+ D G+ ++I++F TF VK++ R+ Sbjct: 1 MNNKEFIAELALRAGYTQADTQKMVTYLVEEMGDRFENGDCVQIANFGTFEVKKRLERII 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T Q + + P+ V+ FK + +K+ + + Sbjct: 61 VNPGTQQRMLVPPKLVLNFKPVAAIKEELKN 91 >gi|300021566|ref|YP_003754177.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523387|gb|ADJ21856.1| histone family protein DNA-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 107 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 46/91 (50%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T + ++++ + +K S + L I +G I+I V+++ +R Sbjct: 17 ETVTLKHIAAALAEAHEIPKKQSIALLEDLVTTIGKHLKKGARIRIGGLGVLQVRKRPAR 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN T + +KI + + F+A+ LK+ + Sbjct: 77 MGRNPATGEAIKIKASKKIAFRAAKELKELV 107 >gi|51598493|ref|YP_072681.1| hbbU protein [Borrelia garinii PBi] gi|219685851|ref|ZP_03540659.1| DNA-binding protein HU [Borrelia garinii Far04] gi|3913405|sp|Q57153|DBH_BORGA RecName: Full=DNA-binding protein HBbu gi|1280557|gb|AAC73080.1| histone-like protein HBbu [Borrelia garinii] gi|1280559|gb|AAC73081.1| histone-like protein HBbu [Borrelia garinii PBi] gi|1280563|gb|AAC73083.1| histone-like protein HBbu [Borrelia garinii] gi|1280565|gb|AAC73084.1| histone-like protein HBbu [Borrelia garinii] gi|1280567|gb|AAC73086.1| histone-like protein HBbu [Borrelia garinii] gi|51573064|gb|AAU07089.1| hbbU protein [Borrelia garinii PBi] gi|73762242|gb|AAZ83609.1| Hbb [Borrelia garinii] gi|219672625|gb|EED29656.1| DNA-binding protein HU [Borrelia garinii Far04] gi|313184979|gb|ADR50054.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184983|gb|ADR50056.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184985|gb|ADR50057.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184987|gb|ADR50058.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184989|gb|ADR50059.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184991|gb|ADR50060.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184993|gb|ADR50061.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184995|gb|ADR50062.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184997|gb|ADR50063.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313184999|gb|ADR50064.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185001|gb|ADR50065.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185003|gb|ADR50066.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185005|gb|ADR50067.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185007|gb|ADR50068.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185009|gb|ADR50069.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185011|gb|ADR50070.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185013|gb|ADR50071.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185015|gb|ADR50072.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185017|gb|ADR50073.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185019|gb|ADR50074.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185023|gb|ADR50076.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185025|gb|ADR50077.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185027|gb|ADR50078.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185031|gb|ADR50080.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185035|gb|ADR50082.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185037|gb|ADR50083.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185039|gb|ADR50084.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185041|gb|ADR50085.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185043|gb|ADR50086.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185045|gb|ADR50087.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185047|gb|ADR50088.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185049|gb|ADR50089.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185051|gb|ADR50090.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185053|gb|ADR50091.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185055|gb|ADR50092.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185057|gb|ADR50093.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185059|gb|ADR50094.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185061|gb|ADR50095.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185063|gb|ADR50096.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185065|gb|ADR50097.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185067|gb|ADR50098.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185069|gb|ADR50099.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185071|gb|ADR50100.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185073|gb|ADR50101.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185075|gb|ADR50102.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185077|gb|ADR50103.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185079|gb|ADR50104.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185081|gb|ADR50105.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185083|gb|ADR50106.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185085|gb|ADR50107.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185087|gb|ADR50108.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185089|gb|ADR50109.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185091|gb|ADR50110.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185093|gb|ADR50111.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185095|gb|ADR50112.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185097|gb|ADR50113.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185105|gb|ADR50117.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185107|gb|ADR50118.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185109|gb|ADR50119.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185111|gb|ADR50120.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185113|gb|ADR50121.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185115|gb|ADR50122.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185117|gb|ADR50123.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185119|gb|ADR50124.1| histone-like protein HBbu [Borrelia burgdorferi] gi|313185121|gb|ADR50125.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|28493083|ref|NP_787244.1| DNA-binding protein HU [Tropheryma whipplei str. Twist] gi|28572291|ref|NP_789071.1| DNA-binding protein HU-alpha [Tropheryma whipplei TW08/27] gi|28410422|emb|CAD66808.1| DNA-binding protein HU-alpha [Tropheryma whipplei TW08/27] gi|28476123|gb|AAO44213.1| DNA-binding protein HU [Tropheryma whipplei str. Twist] Length = 93 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV +++ G+SR + F ++ G + I + + + +R Sbjct: 3 SLNRTELVAKVAETSGVSRATVNSVIEETFAVFAETVRAGGKVTIPGWCSVTRSHRAART 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT + V+I V S LK + Sbjct: 63 GRNPQTGKTVEIPAGYSVRIAPGSKLKAAVK 93 >gi|237737909|ref|ZP_04568390.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] gi|229419789|gb|EEO34836.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817] Length = 106 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + V+ + L ++ ++ + + + V+G+++ F F ++ R Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + +KI R+V FK L +++ Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91 >gi|120403129|ref|YP_952958.1| histone family protein DNA-binding protein [Mycobacterium vanbaalenii PYR-1] gi|119955947|gb|ABM12952.1| bacterial nucleoid protein Hbs [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQK 94 >gi|258648378|ref|ZP_05735847.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259] gi|260851548|gb|EEX71417.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259] Length = 94 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+V I+K+ G+ R V N + DS R + + + F +F +K++ + Sbjct: 1 MTKADIVNEIAKKTGIDRVTVLTTVEAFMNSVKDSLDREQNVYLRGFGSFILKKRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK + + I Sbjct: 61 RNISKNTTLIIPEHNIPAFKPAKSFLQSISK 91 >gi|85706119|ref|ZP_01037214.1| DNA-binding protein HU [Roseovarius sp. 217] gi|85669283|gb|EAQ24149.1| DNA-binding protein HU [Roseovarius sp. 217] Length = 95 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 46/95 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++ E G +K + + ++ I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALADEMGSDKKTAGAALDSVIAIITREVSAGGAVTLPGIGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K + +VV + LK + Sbjct: 61 ERMVRNPATGEQMKKEADKVVKMTIAKALKDSVNG 95 >gi|304382433|ref|ZP_07364932.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973] gi|304336441|gb|EFM02678.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973] Length = 90 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ GL++ D+ + + I D+ V G+ I + F TF V ++ +R G Sbjct: 1 MNKTELIDQIANGSGLTKVDARKALDATVKAIKDALVAGDKIALIGFGTFSVNERPAREG 60 Query: 65 RNLQT 69 N T Sbjct: 61 INPAT 65 >gi|222080139|ref|YP_002540002.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221738784|gb|ACM39563.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L+R + V ++F I D+A+ I SF F +K R GR Sbjct: 3 TTNEIADKIASEQSLTRAQAKTIVESVFKHITDAALACAETSIPSFGKFKIKDTPERQGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +KI + + F +K + Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALN 91 >gi|1280533|gb|AAC73071.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V I+ L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGVYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|237723843|ref|ZP_04554324.1| DNA-binding protein HU [Bacteroides sp. D4] gi|229437858|gb|EEO47935.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4] Length = 94 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++VK IS G+ K V NE+ S + E + + F +F VK++ + Sbjct: 1 MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK S K + Sbjct: 61 RNISKNTAMIIPAHNIPAFKPSDEFLKMVKQ 91 >gi|189460994|ref|ZP_03009779.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM 17136] gi|198277723|ref|ZP_03210254.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM 17135] gi|265768064|ref|ZP_06095446.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|319643873|ref|ZP_07998466.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A] gi|189432333|gb|EDV01318.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM 17136] gi|198269420|gb|EDY93690.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM 17135] gi|263252315|gb|EEZ23851.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16] gi|317384614|gb|EFV65579.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A] Length = 94 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++VK IS G+ K + NE+ S + E + + F +F VK++ + Sbjct: 1 MTKSEIVKEISARTGIDGKAVLAVLEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK S K + Sbjct: 61 RNISKNTTMIIPAHNIPAFKPSDEFLKMVKQ 91 >gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776259|ref|ZP_05217775.1| DNA-binding protein HU [Mycobacterium avium subsp. avium ATCC 25291] gi|41397942|gb|AAS05572.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10] gi|293652258|gb|ADE60770.1| laminin-binding histone-like protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|293652260|gb|ADE60771.1| laminin-binding histone-like protein [Mycobacterium avium subsp. paratuberculosis] gi|293652262|gb|ADE60772.1| laminin-binding histone-like protein [Mycobacterium avium subsp. paratuberculosis] gi|293652264|gb|ADE60773.1| laminin-binding histone-like protein [Mycobacterium avium subsp. avium] gi|293652266|gb|ADE60774.1| laminin-binding histone-like protein [Mycobacterium avium] Length = 212 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|3913404|sp|Q45722|DBH_BORTU RecName: Full=DNA-binding protein HBbu gi|1280607|gb|AAC73104.1| histone-like protein HBbu [Borrelia turicatae] Length = 108 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K V F E+ +S I+ SF TF ++++ Sbjct: 9 VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + V +D V F+ LK+R+ Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERVWG 105 >gi|88854439|ref|ZP_01129106.1| DNA-binding HU protein [marine actinobacterium PHSC20C1] gi|88816247|gb|EAR26102.1| DNA-binding HU protein [marine actinobacterium PHSC20C1] Length = 96 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K++ R++ V +++ + G S+ + V F + +S G + I + + +R Sbjct: 4 KSLNRTEFVAAVAAQSGQSQAAVSGVVDAFFAVLSESVGNGVKVSIPGWMAAEQTFREAR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN QT + ++I V A S LK Sbjct: 64 TGRNPQTGEAIQIKASNGVKLSAGSKLKAA 93 >gi|71907279|ref|YP_284866.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB] gi|71846900|gb|AAZ46396.1| Histone-like bacterial DNA-binding protein [Dechloromonas aromatica RCB] Length = 73 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 36/66 (54%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 V L ++I + V G +++ F +F + + R+GRN +T +V + + V FKA Sbjct: 5 VKELLDQIGQTLVAGNRVEVRGFGSFGLTYRPPRLGRNPKTGDKVAVPGKYVPHFKAGKE 64 Query: 89 LKKRIM 94 L++ ++ Sbjct: 65 LRELVL 70 >gi|269120171|ref|YP_003308348.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] gi|268614049|gb|ACZ08417.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] Length = 91 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 41/73 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + +++ +K G ++K S V + + V+G ++ + TF V+++ +R G Sbjct: 1 MSKKEFIEAYAKSTGETKKRSEELVNAFLETVEKTLVKGNPVQFVGWGTFGVQKRAARKG 60 Query: 65 RNLQTNQEVKIDP 77 RN QT +E+KI Sbjct: 61 RNPQTGKEIKIAA 73 >gi|222102443|ref|YP_002539482.1| HNS-type DNA binding protein [Agrobacterium vitis S4] gi|221739044|gb|ACM39777.1| HNS-type DNA binding protein [Agrobacterium vitis S4] Length = 92 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ GL++ + V ++F I D+A I F F VK R GR Sbjct: 3 TTNEIADKIAANNGLTKVQAKGIVESVFKAIADAAGSDAETSIPGFGKFKVKTSPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +++ + + + F + LK + Sbjct: 63 NPATGEKMTVAASKKLTFAPAKALKDALNK 92 >gi|297621554|ref|YP_003709691.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia chondrophila WSU 86-1044] gi|297376855|gb|ADI38685.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia chondrophila WSU 86-1044] Length = 110 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ G+ D + +++ D GE ++ F F V ++ ++ Sbjct: 9 TVTKKKLINAISQDKGIHPNDVRHVIQAFLDKMTDCLTNGERLEFRDFGVFEVVERKQKI 68 Query: 64 GRNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95 GRN + + + I R V F ++K I Sbjct: 69 GRNPKNASVPIVIPARPAVKFTPGKRMRKLIEK 101 >gi|209552051|ref|YP_002283967.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539644|gb|ACI59575.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 92 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +D+ I+ E L++ V + I ++AV G + F F VK+ R R Sbjct: 3 TTNDIADKIATEHSLTKTQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKETPERDAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +K+ + + F + LK + Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALKDALNK 92 >gi|77464964|ref|YP_354468.1| DNA-binding protein HU, form N [Rhodobacter sphaeroides 2.4.1] gi|126460833|ref|YP_001041947.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221640885|ref|YP_002527147.1| Histone family protein DNA-binding protein [Rhodobacter sphaeroides KD131] gi|332559863|ref|ZP_08414185.1| DNA-binding protein HU-beta [Rhodobacter sphaeroides WS8N] gi|77389382|gb|ABA80567.1| DNA-binding protein HU, form N [Rhodobacter sphaeroides 2.4.1] gi|126102497|gb|ABN75175.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221161666|gb|ACM02646.1| Histone family protein DNA-binding protein [Rhodobacter sphaeroides KD131] gi|332277575|gb|EGJ22890.1| DNA-binding protein HU-beta [Rhodobacter sphaeroides WS8N] Length = 95 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV +++ E G +K + + + + + G A+ + +++ Sbjct: 1 MSKPMTKTQLVATLADEMGSDKKTANAALDAIASIVAREVAAGGAVTLPGLGKVVCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN T ++V + V F + LK + Sbjct: 61 ERQVRNPATGEQVTKAADKQVKFTIAKALKDSVN 94 >gi|238810006|dbj|BAH69796.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 98 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 44/92 (47%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ + V+ I++ + + + ++ + + + + +++S TF K + R Sbjct: 6 KIMTKKEFVQKIAEMLEVPVRVADQYFDAFLFVLKEQLIAEDKVQLSDLGTFETKIRRGR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N TN+ +++ +RVV F S L+ + Sbjct: 66 ETINPFTNEPIQVPEKRVVKFTPSKYLRDIVN 97 >gi|1280553|gb|AAC73078.1| histone-like protein HBbu [Borrelia garinii] gi|1280555|gb|AAC73079.1| histone-like protein HBbu [Borrelia garinii] Length = 108 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V I L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQIFFNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|291280770|ref|YP_003497604.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1] gi|290755472|dbj|BAI81848.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1] Length = 90 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 38/90 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +++ + + + +KD + + + G+ + + + F ++ +R G Sbjct: 1 MKKEEIIALLVERTNMRKKDVKELLNAFEEIVLEGVKEGKKVPLGALGYFKKVERSARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T ++++I V F K+ + Sbjct: 61 HNPKTGEKIQIPATVVPKFVPGKKFKEAVK 90 >gi|317487172|ref|ZP_07945973.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316921573|gb|EFV42858.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 109 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+ DLV+ I+K +S ++ R + + + + ++ + T V + Sbjct: 1 MASKSTKKDLVQHIAKALEVSPVEAERVMLVVMRYVRRQLLEDTSVILPGIGTLAVTETA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 +R+GRN T Q V I PR+ + K S LK+ + R D Sbjct: 61 ARLGRNPHTGQPVPIPPRKTIKLKVSKDLKEAMEPSETVRTGGAD 105 >gi|311742216|ref|ZP_07716026.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272] gi|311314709|gb|EFQ84616.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272] Length = 92 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 46/89 (51%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 I+RSDLV +++++ G ++ ++ ++ L + + DS +GE + I + + +R Sbjct: 2 AISRSDLVSALAEKAGTTKTEADAVLSALSDVLLDSVGKGEKVSIPGILSVERVSRAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN T + ++I V A S LK Sbjct: 62 GRNPSTGETIEIPAGFGVKVSAGSKLKAA 90 >gi|255603750|ref|XP_002538109.1| DNA-binding protein HU, putative [Ricinus communis] gi|223513783|gb|EEF24275.1| DNA-binding protein HU, putative [Ricinus communis] Length = 92 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + L++ S V +F I +A G I F F VK +R R Sbjct: 3 TTNEIADKIAADHKLTKVQSKAIVEAVFAAITGAATSGAETSIPGFGKFKVKDTPAREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +K+ + + F + LK + Sbjct: 63 NPGTGATIKVAASKKLAFTPAKALKDALNK 92 >gi|254525351|ref|ZP_05137404.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14] gi|219718467|gb|EED36994.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14] Length = 71 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 37 CDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + G+A+ + F TF V+ + +R GRN +T +KI + FKA LK + Sbjct: 14 TKALKDGDAVTLVGFGTFQVRDRAARTGRNPKTGDTIKIAASKNPSFKAGKALKDAVN 71 >gi|332638320|ref|ZP_08417183.1| DNA-binding protein hu [Weissella cibaria KACC 11862] Length = 92 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 39/64 (60%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 +++L+ ++ + G ++ ++T+ V L + I D +GE + + F TF V+++ +R GRN Sbjct: 4 KTELIDLVAAKTGQAKSETTKTVNALLDVIKDQLAQGEKVALVGFGTFEVRERAARKGRN 63 Query: 67 LQTN 70 QT Sbjct: 64 PQTG 67 >gi|212703101|ref|ZP_03311229.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC 29098] gi|212673367|gb|EEB33850.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC 29098] Length = 97 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 5 ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+ DLV+++++ L + D + L + G + + K Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 + +R+GRN +T + V I RRVVVF S L Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91 >gi|262382608|ref|ZP_06075745.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] gi|262295486|gb|EEY83417.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B] Length = 95 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LVK+++ + +++ ++ RFV ++ ++ + F T ++ R+G Sbjct: 1 MNRRELVKTLADKMSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN + I RR V FK +L KR+ Sbjct: 61 RNPRNGVAYMIRARRSVKFKPGKLLLKRLNAS 92 >gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodococcus opacus B4] gi|226244451|dbj|BAH54799.1| putative DNA-binding protein HU [Rhodococcus opacus B4] Length = 231 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RG+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94 >gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110822990|gb|ABG98274.1| DNA-binding protein [Rhodococcus jostii RHA1] Length = 230 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RG+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94 >gi|288926928|ref|ZP_06420826.1| DNA-binding protein HU-beta [Prevotella buccae D17] gi|315607055|ref|ZP_07882059.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574] gi|288336287|gb|EFC74670.1| DNA-binding protein HU-beta [Prevotella buccae D17] gi|315251109|gb|EFU31094.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574] Length = 91 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S+L++ I+ LS+ D+ + + N I D+ V G+ I++ F TF V ++ +R G Sbjct: 1 MNKSELIEKIAATAELSKADAKKALDATVNAIKDALVAGDKIQLVGFGTFAVSERPAREG 60 Query: 65 RNLQT 69 N T Sbjct: 61 INPAT 65 >gi|83319387|ref|YP_424299.1| DNA-binding protein, HU [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283273|gb|ABC01205.1| DNA-binding protein, HU [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 92 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ I+ E +S+K+ V +F I + + + + IS F F + QK SR G Sbjct: 1 MTKKELINKIALETEVSKKEVNLIVKKVFELISKNLLDKKEVLISDFGKFTILQKVSRKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q++ I + V FK S LK+ ++ + Sbjct: 61 VNPITRQKMVIPASKTVKFKPSKQLKELLIKE 92 >gi|302343037|ref|YP_003807566.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] gi|301639650|gb|ADK84972.1| histone family protein DNA-binding protein [Desulfarculus baarsii DSM 2075] Length = 93 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 2/92 (2%) Query: 5 ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + DL+ +++ + G + R V F + ++ RGE ++I+ F + V+ + +R Sbjct: 1 MNKKDLIAAVAGKLGYGPCAPVTGRVVEAAFEAMAEALGRGEQVRINGFGVWRVRGRKAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T + ++I V+F+ + LK R+ Sbjct: 61 EGRNPRTGESIQIPAASGVIFRPADALKGRVN 92 >gi|84685968|ref|ZP_01013864.1| DNA-binding protein HU [Maritimibacter alkaliphilus HTCC2654] gi|84666061|gb|EAQ12535.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2654] Length = 95 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 47/94 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E +K ++ + + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMDTDKKSASAALDAITSIITKEVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN T +++K + +VV + LK + Sbjct: 61 ERMVRNPATGEQIKKEADKVVKMTIAKALKDSVN 94 >gi|78045437|ref|YP_361687.1| histone-like family DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033941|emb|CAJ19940.1| histone-like family DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 99 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 48/97 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L +I+ +++ +++ V T+ + + + I+ F F ++ K R Sbjct: 1 MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +T + V++ R V F A+ LK+R +D G + Sbjct: 61 RNPKTGETVQVGERVAVQFTAADELKRRFLDSKNGNR 97 >gi|146278828|ref|YP_001168987.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|145557069|gb|ABP71682.1| histone family protein DNA-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 95 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV +++ E G +K + + + + + G A+ + +++ Sbjct: 1 MSKPMTKTQLVATLADEMGADKKTANAALDAIASIVAREVAAGGAVTLPGLGKVVCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN T ++V + V F + LK + Sbjct: 61 ERQVRNPATGEQVTKAADKQVKFTIAKALKDSVN 94 >gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Rv] gi|15842542|ref|NP_337579.1| DNA binding protein HU, putative [Mycobacterium tuberculosis CDC1551] gi|31794162|ref|NP_856655.1| DNA-binding protein HU [Mycobacterium bovis AF2122/97] gi|148662836|ref|YP_001284359.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra] gi|148824176|ref|YP_001288930.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis F11] gi|167969993|ref|ZP_02552270.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Ra] gi|215404970|ref|ZP_03417151.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 02_1987] gi|215412830|ref|ZP_03421542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 94_M4241A] gi|215428438|ref|ZP_03426357.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T92] gi|215431936|ref|ZP_03429855.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis EAS054] gi|215447253|ref|ZP_03434005.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T85] gi|218754746|ref|ZP_03533542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis GM 1503] gi|219559018|ref|ZP_03538094.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T17] gi|253797921|ref|YP_003030922.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis KZN 1435] gi|254233069|ref|ZP_04926396.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis C] gi|254365619|ref|ZP_04981664.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis str. Haarlem] gi|254552063|ref|ZP_05142510.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188010|ref|ZP_05765484.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis CPHL_A] gi|260202128|ref|ZP_05769619.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T46] gi|289444550|ref|ZP_06434294.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T46] gi|289448658|ref|ZP_06438402.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis CPHL_A] gi|289553224|ref|ZP_06442434.1| predicted protein [Mycobacterium tuberculosis KZN 605] gi|289571185|ref|ZP_06451412.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T17] gi|289746790|ref|ZP_06506168.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 02_1987] gi|289751663|ref|ZP_06511041.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T92] gi|289755102|ref|ZP_06514480.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289759111|ref|ZP_06518489.1| predicted protein [Mycobacterium tuberculosis T85] gi|289763166|ref|ZP_06522544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis GM 1503] gi|294993927|ref|ZP_06799618.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 210] gi|297635611|ref|ZP_06953391.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN 4207] gi|297732609|ref|ZP_06961727.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN R506] gi|298526456|ref|ZP_07013865.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 94_M4241A] gi|306777279|ref|ZP_07415616.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis SUMu001] gi|306781190|ref|ZP_07419527.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis SUMu002] gi|306785829|ref|ZP_07424151.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis SUMu003] gi|306794680|ref|ZP_07432982.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis SUMu005] gi|306798923|ref|ZP_07437225.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis SUMu006] gi|306804768|ref|ZP_07441436.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis SUMu008] gi|306808962|ref|ZP_07445630.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis SUMu007] gi|306969060|ref|ZP_07481721.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis SUMu009] gi|306973397|ref|ZP_07486058.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis SUMu010] gi|307081105|ref|ZP_07490275.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis SUMu011] gi|307085709|ref|ZP_07494822.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis SUMu012] gi|313659941|ref|ZP_07816821.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN V2475] gi|6014921|sp|P95109|DBH_MYCTU RecName: Full=DNA-binding protein HU homolog; AltName: Full=21 kDa laminin-2-binding protein; AltName: Full=28 kDa iron-regulated protein; Short=Irep-28; AltName: Full=Histone-like protein; Short=Hlp gi|38605697|sp|Q9XB18|DBH_MYCBO RecName: Full=DNA-binding protein HU homolog; AltName: Full=Histone-like protein; Short=Hlp gi|1694845|emb|CAB05427.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13882853|gb|AAK47393.1| DNA binding protein HU, putative [Mycobacterium tuberculosis CDC1551] gi|31619757|emb|CAD96697.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN) [Mycobacterium bovis AF2122/97] gi|124602128|gb|EAY61138.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis C] gi|134151132|gb|EBA43177.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis str. Haarlem] gi|148506988|gb|ABQ74797.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra] gi|148722703|gb|ABR07328.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis F11] gi|253319424|gb|ACT24027.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis KZN 1435] gi|289417469|gb|EFD14709.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T46] gi|289421616|gb|EFD18817.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis CPHL_A] gi|289437856|gb|EFD20349.1| predicted protein [Mycobacterium tuberculosis KZN 605] gi|289544939|gb|EFD48587.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T17] gi|289687318|gb|EFD54806.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 02_1987] gi|289692250|gb|EFD59679.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis T92] gi|289695689|gb|EFD63118.1| predicted protein [Mycobacterium tuberculosis EAS054] gi|289710672|gb|EFD74688.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis GM 1503] gi|289714675|gb|EFD78687.1| predicted protein [Mycobacterium tuberculosis T85] gi|298496250|gb|EFI31544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium tuberculosis 94_M4241A] gi|308214329|gb|EFO73728.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis SUMu001] gi|308325973|gb|EFP14824.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis SUMu002] gi|308329504|gb|EFP18355.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis SUMu003] gi|308337000|gb|EFP25851.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis SUMu005] gi|308340814|gb|EFP29665.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis SUMu006] gi|308344677|gb|EFP33528.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis SUMu007] gi|308348627|gb|EFP37478.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis SUMu008] gi|308353353|gb|EFP42204.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis SUMu009] gi|308357197|gb|EFP46048.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis SUMu010] gi|308361151|gb|EFP50002.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis SUMu011] gi|308364744|gb|EFP53595.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis SUMu012] gi|323718365|gb|EGB27539.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis CDC1551A] gi|326904600|gb|EGE51533.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis W-148] gi|328457696|gb|AEB03119.1| hypothetical protein TBSG_00990 [Mycobacterium tuberculosis KZN 4207] Length = 214 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|324998717|ref|ZP_08119829.1| hypothetical protein PseP1_08129 [Pseudonocardia sp. P1] Length = 98 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +++ G R+ + V + + I D+ G + ++ F F +++ R Sbjct: 1 MNKAQLVDALTTRLG-DRRAAAEAVDAMVDVIVDTVGAGGTVTLTGFGVFEPRRRAPRTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN +T + V + V F+ + K+R+ D Sbjct: 60 RNPRTGETVPVAETVVPSFRPGAAFKERVADS 91 >gi|87248001|gb|ABD36054.1| Hbb [Borrelia lusitaniae] gi|87248003|gb|ABD36055.1| Hbb [Borrelia lusitaniae] Length = 108 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|323345506|ref|ZP_08085729.1| DNA-binding protein HU-beta [Prevotella oralis ATCC 33269] gi|323093620|gb|EFZ36198.1| DNA-binding protein HU-beta [Prevotella oralis ATCC 33269] Length = 97 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S+ G +++++ V + + S GE + I F TF +K++ RV Sbjct: 1 MNNKEFISELSQRSGYTQENTQNLVRGIIDAFGISFDDGEDVHIGGFGTFELKKRTERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N T Q + + P+ V+ F+ + +K+++ + Sbjct: 61 VNPSTGQRMMVPPKLVLTFRPVASIKEKLKNGGH 94 >gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-binding protein hupb [Rhodococcus equi 103S] gi|325675901|ref|ZP_08155585.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311889820|emb|CBH49137.1| histone-like bacterial DNA-binding protein HupB [Rhodococcus equi 103S] gi|325553872|gb|EGD23550.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 242 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ ++ V + + I + GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGTDRRTASEAVEHVVDTIVRAVHAGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKALIAGGQK 94 >gi|260206310|ref|ZP_05773801.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis K85] gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis K85] gi|289540124|gb|EFD44702.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis K85] Length = 214 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU homolog hupB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224991359|ref|YP_002646048.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|4996103|dbj|BAA78330.1| MDP1 [Mycobacterium bovis] gi|121494515|emb|CAL72996.1| Probable DNA-binding protein HU homolog hupB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774474|dbj|BAH27280.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG str. Tokyo 172] gi|264669723|gb|ACY72210.1| laminin-binding histone-like protein [Mycobacterium bovis BCG] Length = 205 Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|221632837|ref|YP_002522059.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159] gi|221156064|gb|ACM05191.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159] Length = 92 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SDL+K +++ + V +F I ++ +GE + I+ F TF V ++ R G Sbjct: 1 MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +TN+ ++I RR F+ + LK+ + Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAVAG 91 >gi|283458729|ref|YP_003363367.1| nucleoid DNA-binding protein [Rothia mucilaginosa DY-18] gi|283134782|dbj|BAI65547.1| bacterial nucleoid DNA-binding protein [Rothia mucilaginosa DY-18] Length = 95 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K R++LV ++++ G S+ + +F S +GE I I + + Sbjct: 1 MAK--NRTELVAEVAEKSGKSQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87 +R GRN QT + ++I V A S Sbjct: 59 ARTGRNPQTGETIQIPAGHGVKLTAGS 85 >gi|237712971|ref|ZP_04543452.1| DNA-binding protein HU [Bacteroides sp. D1] gi|237717786|ref|ZP_04548267.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|256842595|ref|ZP_05548096.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262409581|ref|ZP_06086122.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] gi|229446946|gb|EEO52737.1| DNA-binding protein HU [Bacteroides sp. D1] gi|229452885|gb|EEO58676.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|256735732|gb|EEU49065.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262352595|gb|EEZ01694.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22] Length = 94 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++VK IS G+ K V NE+ S + E + + F +F VK++ + Sbjct: 1 MTKSEIVKEISARTGIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N + I + FK S Sbjct: 61 RNISKNTTMIIPAHNIPAFKPSDEF 85 >gi|1280547|gb|AAC73087.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280549|gb|AAC73088.1| histone-like protein HBbu [Borrelia burgdorferi] gi|1280551|gb|AAC73089.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 VTKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|42519971|ref|NP_965886.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225677276|ref|ZP_03788259.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|42409708|gb|AAS13820.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila melanogaster] gi|225590696|gb|EEH11940.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 101 Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 51/86 (59%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + I++E GLS++DS + + +EI S V+ +KISSF TF VK+K R G T Sbjct: 16 IAGDINQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 +++V I R V F+ S I+KK I + Sbjct: 76 SEKVMIQARNSVSFRPSKIIKKSINN 101 >gi|225158968|ref|ZP_03725280.1| histone family protein DNA-binding protein [Opitutaceae bacterium TAV2] gi|224802463|gb|EEG20723.1| histone family protein DNA-binding protein [Opitutaceae bacterium TAV2] Length = 102 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+ ++V I ++ G +K+ V + I + G +++ +F V+++ Sbjct: 1 MPANLTKREIVLEIYEKTGFPQKEIVTSVQMTLDIIMRALSEGRNVELRNFGVLEVQRRK 60 Query: 61 SRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMD 95 SR+GRN + EV I R VV FK+ ILK+ + Sbjct: 61 SRIGRNPNKPEAEVVIPERAVVKFKSGKILKQLLKK 96 >gi|116254928|ref|YP_770763.1| putative DNA-binding protein HU-alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115259576|emb|CAK11544.1| putative DNA-binding protein Hu-alpha [Rhizobium leguminosarum bv. viciae 3841] Length = 92 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ E L++ V + I ++AV G + F F VK R R Sbjct: 3 TTNEIADKIAGEHSLTKAQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKATPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +K+ + + F + LK + Sbjct: 63 NPSTGATIKVAAAKKLAFTPAKALKDALNK 92 >gi|254461410|ref|ZP_05074826.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2083] gi|206677999|gb|EDZ42486.1| DNA-binding protein HU [Rhodobacteraceae bacterium HTCC2083] Length = 95 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K S + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGADKKASGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D +VV + LK + Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 95 >gi|261749189|ref|YP_003256874.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497281|gb|ACX83731.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 97 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 48/97 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ I E G R D+ + + T +I S GE + + F +F +K + ++G Sbjct: 1 MTKADIITEIISETGSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKLG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R++ + + I + FK + + + ++ +K Sbjct: 61 RHISKDMSIVIPAHNIPAFKPAKAFTELVKKNVPIKK 97 >gi|189461332|ref|ZP_03010117.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM 17136] gi|189431861|gb|EDV00846.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM 17136] Length = 96 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +L+ +S+ G + KD+ R +T++ + + G+ I I F TF VK+K R+ Sbjct: 1 MNNKELIGELSRRLGYTNKDAARLLTSVTGIMGEELQEGKVIAIQDFGTFEVKKKMERIT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T Q + P+ ++ F+ S++ K+R+ Sbjct: 61 VNPVTKQRFLVPPKLILNFRPSNLWKERLKK 91 >gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229319681|gb|EEN85513.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 183 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RGE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94 >gi|84503484|ref|ZP_01001539.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597] gi|84388162|gb|EAQ01115.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597] Length = 95 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 48/94 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++ E G +K + + L N I G A+ I F+ +++ Sbjct: 1 MAKPLTKTQLVAALADELGSDKKTAGAALDALANVITKEVSGGGAVAIPGVGKFYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN TN+++K + RVV + LK + Sbjct: 61 ERMVRNPATNEQIKKEADRVVKVTIAKALKDSVN 94 >gi|320333649|ref|YP_004170360.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] gi|319754938|gb|ADV66695.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] Length = 122 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 44/84 (52%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ ++ ++ + L++K + V T+ + + ++ G+++ + TF V + +R G Sbjct: 36 KTQIIDLVADQTSLNKKQAAEAVATMLDVVVEALRDGKSVGLPGLGTFSVAKTAARTGVK 95 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T++ + I + V FK +S LK Sbjct: 96 PGTSERITIPAGKKVRFKVASTLK 119 >gi|253565663|ref|ZP_04843118.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] gi|251945942|gb|EES86349.1| DNA-binding protein HU [Bacteroides sp. 3_2_5] Length = 96 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S+ G + K ++ +T+L ++I G AI I F TF VK+K R+ Sbjct: 1 MNNKEFTSELSRRLGYNTKYTSELITSLLSDITQELQEGNAIGIQGFGTFEVKKKAERIV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + P+ V+ FK S ILK + + Sbjct: 61 INPVTKLRLLVPPKLVLAFKPSPILKDKFKE 91 >gi|163745273|ref|ZP_02152633.1| DNA-binding protein HU [Oceanibulbus indolifex HEL-45] gi|161382091|gb|EDQ06500.1| DNA-binding protein HU [Oceanibulbus indolifex HEL-45] Length = 95 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 46/95 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E +K + + + N I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMDTDKKSAGAALDAVCNLITREVSAGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T ++ K D +VV + LK + + Sbjct: 61 ERMVRNPATGEQFKKDADKVVKMTIAKALKDSVNE 95 >gi|313185101|gb|ADR50115.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +++SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 LSKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|281424724|ref|ZP_06255637.1| DNA-binding protein HU-beta [Prevotella oris F0302] gi|299142061|ref|ZP_07035195.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735] gi|281401094|gb|EFB31925.1| DNA-binding protein HU-beta [Prevotella oris F0302] gi|298576523|gb|EFI48395.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735] Length = 91 Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ GLS+ D+ + + I ++ V G+ I++ F TF V ++ +R G Sbjct: 1 MNKTELIDKIAAGAGLSKADAKKALDATTAAIKEALVAGDKIQLVGFGTFSVNERPAREG 60 Query: 65 RNL 67 N Sbjct: 61 INP 63 >gi|225848149|ref|YP_002728312.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643798|gb|ACN98848.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Sulfurihydrogenibium azorense Az-Fu1] Length = 100 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%) Query: 5 ITRSDLVKSISKEFGLS----RKDSTRFVTTLFNEICDSA----VRGEAIKISSFATFHV 56 + R+D+V I K+ L+ +++ + V F+ I + G+ + IS F TF + Sbjct: 1 MKRADIVNMIHKDKDLNLSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFII 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 K++ +VGRN +T +E I R + FKA LKK+I Sbjct: 61 KRRKGKVGRNPKTGEEKLIPDRLGISFKAGKELKKKINQ 99 >gi|218258078|ref|ZP_03474505.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii DSM 18315] gi|218225797|gb|EEC98447.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii DSM 18315] Length = 91 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS L+ +SK+ GL +KD R + + I G+ I + F +F + + SR Sbjct: 1 MNRSQLINILSKKTGLDKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ V++ PR ++ FK + L + + Sbjct: 61 RNPKSGTAVQLSPRTIIHFKCAPHLLELMNK 91 >gi|224534210|ref|ZP_03674788.1| DNA-binding protein HU [Borrelia spielmanii A14S] gi|73762238|gb|AAZ83607.1| Hbb [Borrelia spielmanii] gi|74476805|gb|ABA08453.1| Hbb [Borrelia spielmanii] gi|74476807|gb|ABA08454.1| Hbb [Borrelia spielmanii] gi|74476809|gb|ABA08455.1| Hbb [Borrelia spielmanii] gi|78482926|emb|CAJ20126.1| hbb protein [Borrelia spielmanii] gi|78482928|emb|CAJ20127.1| hbb protein [Borrelia spielmanii] gi|224514312|gb|EEF84628.1| DNA-binding protein HU [Borrelia spielmanii A14S] Length = 108 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFQELKSNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERVWG 105 >gi|308190236|ref|YP_003923167.1| DNA-binding protein HU [Mycoplasma fermentans JER] gi|319777603|ref|YP_004137254.1| bacterial nucleoid DNA-binding protein [Mycoplasma fermentans M64] gi|307624978|gb|ADN69283.1| putative DNA-binding protein HU [Mycoplasma fermentans JER] gi|318038678|gb|ADV34877.1| Bacterial nucleoid DNA-binding protein [Mycoplasma fermentans M64] Length = 91 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V+ I++ + + + ++ + + + + +++S TF K + R Sbjct: 1 MTKKEFVQKIAEMLEVPVRVADQYFDAFLFVLKEQLIAEDKVQLSDLGTFETKIRRGRET 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N TN+ +++ +RVV F S L+ + Sbjct: 61 INPFTNEPIQVPEKRVVKFTPSKYLRDIVN 90 >gi|257463408|ref|ZP_05627803.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|317060975|ref|ZP_07925460.1| DNA-binding protein HU [Fusobacterium sp. D12] gi|313686651|gb|EFS23486.1| DNA-binding protein HU [Fusobacterium sp. D12] Length = 91 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + K + S + ++ R + T+F+ + + +R + I+++ V ++ R+ Sbjct: 1 MTKKEFAKVLFDNGVYSSKAEAERNIETIFSLMEECIIRDGSFSITNWGKLEVVERAPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EVKI R+ + F+ +++ Sbjct: 61 GRNPKTGEEVKIPSRKSIKFRPGKAFLEKLN 91 >gi|284040813|ref|YP_003390743.1| histone family protein DNA-binding protein [Spirosoma linguale DSM 74] gi|283820106|gb|ADB41944.1| histone family protein DNA-binding protein [Spirosoma linguale DSM 74] Length = 100 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 52/100 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D++ IS + G+ + + T + T F+ + DS GE I + F +F K++ +V Sbjct: 1 MTKADVIAEISDKTGIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 RN+ N + ID + FK + + +++ + + + Sbjct: 61 RNISKNTAMVIDEHFIPSFKPAKVFVEQVKTSDKAKVAAE 100 >gi|257451617|ref|ZP_05616916.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|257466933|ref|ZP_05631244.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|315918076|ref|ZP_07914316.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] gi|317058182|ref|ZP_07922667.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313683858|gb|EFS20693.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313691951|gb|EFS28786.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563] Length = 91 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + K + S + ++ R + T+F+ + + + + I+++ V ++ R+ Sbjct: 1 MTKKEFAKVLFDNGVYSSKAEAERNIETIFSLMEECIINDGSFSITNWGKLEVVERAPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EVKI R+ + F+ +++ Sbjct: 61 GRNPKTGEEVKIPSRKSIKFRPGKAFLEKLN 91 >gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_06550 [Mycobacterium kansasii ATCC 12478] Length = 217 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQK 94 >gi|220923150|ref|YP_002498452.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] gi|219947757|gb|ACL58149.1| histone family protein DNA-binding protein [Methylobacterium nodulans ORS 2060] Length = 90 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+K+I+ + G+S ++ + + S G+ + + ++ +R G Sbjct: 1 MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T Q ++I R V +AS+ L + Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90 >gi|150010105|ref|YP_001304848.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|255012635|ref|ZP_05284761.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7] gi|301308155|ref|ZP_07214109.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149938529|gb|ABR45226.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC 8503] gi|300833625|gb|EFK64241.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 95 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LVK+++ + +++ ++ RFV ++ ++ + F T ++ R+G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN + I R+ V FK +L K++ Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLNAS 92 >gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodococcus erythropolis PR4] gi|226185014|dbj|BAH33118.1| putative DNA-binding protein HU [Rhodococcus erythropolis PR4] Length = 228 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + RGE++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94 >gi|163841555|ref|YP_001625960.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209] gi|162955031|gb|ABY24546.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209] Length = 107 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV ++ + S+ + LF+ S GE I I + + Sbjct: 1 MAK--NRSELVAEVAAKAETSQAAVNNVLDALFSTFESSVAAGEKITIPGWLAVERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 +R GRN QT + ++I V A S L Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGSKL 87 >gi|53802893|ref|YP_115338.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus str. Bath] gi|53756654|gb|AAU90945.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus str. Bath] Length = 95 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +S L+ +I ++ L++ R + L N ++ G+ + I A VK++ +R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN QT + V+I +RV LK+R+ Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERVQGG 94 >gi|209528275|ref|ZP_03276738.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] gi|209491295|gb|EDZ91687.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] Length = 71 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 34/68 (50%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 ++ + D+ E + + F +F +++ +R GRN QT +++ I V F A Sbjct: 3 VLSAALESVIDAVATQEKVTLVGFGSFEARKRKAREGRNPQTGEKMDIPETWVPAFSAGK 62 Query: 88 ILKKRIMD 95 + K+++ D Sbjct: 63 LFKEKVAD 70 >gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium leprae TN] gi|221230371|ref|YP_002503787.1| putative histone-like protein [Mycobacterium leprae Br4923] gi|6014920|sp|O33125|DBH_MYCLE RecName: Full=DNA-binding protein HU homolog; AltName: Full=21 kDa laminin-2-binding protein; AltName: Full=Histone-like protein; Short=Hlp gi|2414560|emb|CAB16449.1| histone-like DNA binding protein [Mycobacterium leprae] gi|6009551|dbj|BAA84958.1| 21-kDa laminin-2-binding protein [Mycobacterium leprae] gi|13093447|emb|CAC30636.1| probable histone-like protein [Mycobacterium leprae] gi|219933478|emb|CAR71778.1| probable histone-like protein [Mycobacterium leprae Br4923] Length = 200 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVAGAQR 94 >gi|189218096|ref|YP_001938738.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] gi|189184954|gb|ACD82139.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] Length = 109 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TR DLV +S + GL +++ + + + + + E I++ +F F V + +R+G Sbjct: 1 MTRRDLVVKVSTKTGLPQQEVAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARIG 60 Query: 65 RNLQTNQE-VKIDPRRVVVFKASSILKKRIM 94 RN + ++ + I PR V+ FK +K + Sbjct: 61 RNPRNPEKDILIPPRAVIRFKPGKEVKGILN 91 >gi|218667767|ref|YP_002425678.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519980|gb|ACK80566.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 91 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 1 MSKTITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 MS+ + DL KS+ GL + + + V L I + G ++I F TF Sbjct: 1 MSEISGKKDLAKSLVD-AGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIH 59 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + +R+GRN QT E++I R+V+ FKAS Sbjct: 60 RAARMGRNPQTGGELEIPERKVLTFKASKS 89 >gi|1280561|gb|AAC73082.1| histone-like protein HBbu [Borrelia garinii] Length = 108 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ + F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHIAYFRPGKDLKERVWG 105 >gi|330962165|gb|EGH62425.1| HU family DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 93 Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >gi|331271066|ref|YP_004385777.1| DNA-binding protein HU1 [Clostridium botulinum BKT015925] gi|329127458|gb|AEB77402.1| DNA-binding protein HU1 [Clostridium botulinum BKT015925] Length = 95 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++LV S++++ L++KD+ + + ++ G+ I++ F TF +++ R G Sbjct: 1 MNKTELVNSMAEKAVLTKKDAELALKAFIESVKEALKEGKKIQLIGFGTFETREQKGRTG 60 Query: 65 -RNL--QTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + + + V VFKA LK+ + + Sbjct: 61 TINFGSKKGETYTSKDKIVPVFKAGRQLKEIVDN 94 >gi|297516633|ref|ZP_06935019.1| transcriptional regulator HU subunit beta [Escherichia coli OP50] Length = 63 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R G Sbjct: 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTG 60 Query: 65 RNL 67 RN Sbjct: 61 RNP 63 >gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacterium ulcerans] Length = 229 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|149913075|ref|ZP_01901609.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b] gi|149813481|gb|EDM73307.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b] Length = 95 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 45/95 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++ E G +K + + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALADEMGTDKKTAGTALDAVTAIITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K + +VV + LK + Sbjct: 61 ERMVRNPATGEQIKKEADKVVKMTIAKALKDSVNG 95 >gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacterium ulcerans] Length = 220 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like protein [Mycobacterium ulcerans Agy99] gi|62632019|gb|AAX89114.1| laminin-binding protein [Mycobacterium ulcerans] gi|118569666|gb|ABL04417.1| DNA-binding protein Hu HupB-like protein [Mycobacterium ulcerans Agy99] Length = 229 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacterium ulcerans] Length = 229 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|289627960|ref|ZP_06460914.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 93 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ F + +L I Sbjct: 62 GRNPSTGASIEIAAKKVIKFVPAKVLTDSINK 93 >gi|298373014|ref|ZP_06983004.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str. F0058] gi|298275918|gb|EFI17469.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str. F0058] Length = 91 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DLVK+I+ E GLS+ DS + + N + S V+GE++ + F TF V ++ +R G Sbjct: 1 MNKQDLVKAIATEAGLSQVDSKKALEAFENAVKKSLVKGESVTMIGFGTFSVVKRAARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + ++I ++V FK S L + + Sbjct: 61 INPANGKPLQIKAKKVAKFKVGSKLAEAVAK 91 >gi|89145734|gb|ABD62056.1| Hbb [Borrelia genomosp. 1] gi|89145736|gb|ABD62057.1| Hbb [Borrelia genomosp. 1] Length = 108 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K + F ++ + I+ SF TF V+++ Sbjct: 9 VTKSDIVDQISLHIRNNNLKLEKKYIRLVIDAFFEKLKSNLCSNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK+ V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGRDLKERVWG 105 >gi|259417894|ref|ZP_05741813.1| DNA-binding protein HU [Silicibacter sp. TrichCH4B] gi|259346800|gb|EEW58614.1| DNA-binding protein HU [Silicibacter sp. TrichCH4B] Length = 97 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 44/96 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++E +K + + + N I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVAALAEEMDSDKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R RN T ++ + +VV + LK + D Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGD 96 >gi|256824922|ref|YP_003148882.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547] gi|256688315|gb|ACV06117.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547] Length = 106 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL + + G + +++ V L + + G + ++ F TF ++ R G Sbjct: 1 MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + V+I F+ S + + + D Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFVAD 90 >gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacterium ulcerans] Length = 220 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [Mycobacterium marinum M] gi|62632029|gb|AAX89119.1| laminin-binding protein [Mycobacterium ulcerans] gi|183175067|gb|ACC40177.1| DNA-binding protein Hu, HupB [Mycobacterium marinum M] Length = 220 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacterium ulcerans] Length = 211 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacterium ulcerans] Length = 211 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|300743697|ref|ZP_07072717.1| DNA-binding protein HU [Rothia dentocariosa M567] gi|311112948|ref|YP_003984170.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931] gi|300380058|gb|EFJ76621.1| DNA-binding protein HU [Rothia dentocariosa M567] gi|310944442|gb|ADP40736.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931] Length = 106 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K R++LV ++++ G S+ + +F S +GE I I + + Sbjct: 1 MAK--NRTELVAEVAEKSGKSQATVNAVLDAVFQAFETSVSKGEKITIPGWLAIERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87 +R GRN QT + ++I V A S Sbjct: 59 ARTGRNPQTGETIQIPAGHGVKLTAGS 85 >gi|261880407|ref|ZP_06006834.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] gi|270332952|gb|EFA43738.1| DNA-binding protein HU [Prevotella bergensis DSM 17361] Length = 93 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEIC-DSAVRGEAIKISSFATFHVKQKGSRV 63 +T++D++ I+++ GL +K+ + + + + + E + + F +F VK++ ++ Sbjct: 1 MTKADIISEIAEQTGLQKKEVSVVIECFMETVKRNMLEKKENVYLRGFGSFIVKRRAAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R++ N + I FK + + + + Sbjct: 61 ARDIGKNTTITIPAHDFPSFKPAKAFVEEMKGE 93 >gi|28868477|ref|NP_791096.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000] gi|71735134|ref|YP_273418.1| HU family DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|213967075|ref|ZP_03395224.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|237799866|ref|ZP_04588327.1| HU family DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|257487397|ref|ZP_05641438.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289651134|ref|ZP_06482477.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298485811|ref|ZP_07003890.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301386379|ref|ZP_07234797.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063942|ref|ZP_07255483.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302133049|ref|ZP_07259039.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302188392|ref|ZP_07265065.1| HU family DNA-binding protein [Pseudomonas syringae pv. syringae 642] gi|28851715|gb|AAO54791.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str. DC3000] gi|71555687|gb|AAZ34898.1| DNA-binding protein HU family [Pseudomonas syringae pv. phaseolicola 1448A] gi|213927917|gb|EEB61463.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|298159837|gb|EFI00879.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322895|gb|EFW78986.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329796|gb|EFW85784.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330873104|gb|EGH07253.1| HU family DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330887716|gb|EGH20377.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330899524|gb|EGH30943.1| HU family DNA-binding protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950952|gb|EGH51212.1| HU family DNA-binding protein [Pseudomonas syringae Cit 7] gi|330975719|gb|EGH75785.1| HU family DNA-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331009010|gb|EGH89066.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331015242|gb|EGH95298.1| HU family DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] gi|331022721|gb|EGI02778.1| HU family DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 93 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155] gi|14194641|sp|Q9ZHC5|DBH_MYCS2 RecName: Full=DNA-binding protein HU homolog; AltName: Full=Histone-like protein; Short=Hlp gi|3930569|gb|AAD13809.1| histone-like protein [Mycobacterium smegmatis str. MC2 155] gi|67515139|gb|AAY68087.1| histone-like protein [Mycobacterium smegmatis str. MC2 155] gi|118172626|gb|ABK73522.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155] Length = 208 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K I + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAQK 94 >gi|258651712|ref|YP_003200868.1| histone family protein DNA-binding protein [Nakamurella multipartita DSM 44233] gi|258554937|gb|ACV77879.1| histone family protein DNA-binding protein [Nakamurella multipartita DSM 44233] Length = 222 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 45/101 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+ +++ +K + V + + I +G ++ IS F F + + +R Sbjct: 1 MNKTDLINQLAERLDGDKKKAQVAVEGVIDLIQREVQKGRSVSISGFGVFEKRARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 RN +T + VK+ V F+ K I ++ K + Sbjct: 61 RNPRTGEAVKVRKTNVPAFRPGKYFKDVIAGTVKLPKPSNT 101 >gi|226330391|ref|ZP_03805909.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198] gi|225201186|gb|EEG83540.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198] Length = 87 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 40/65 (61%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T++++ +++ ++ G+S++D+ V + F E+ S GE +K+S F F ++ K R Sbjct: 2 ALTKAEMAENLFEKLGVSKRDAKDLVESFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRP 61 Query: 64 GRNLQ 68 GRN + Sbjct: 62 GRNPK 66 >gi|254476572|ref|ZP_05089958.1| DNA-binding protein HU [Ruegeria sp. R11] gi|214030815|gb|EEB71650.1| DNA-binding protein HU [Ruegeria sp. R11] Length = 95 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++E G +K + + + I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVAALAEEMGSDKKAAGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN T ++ + +VV + LK + Sbjct: 61 EREVRNPATGEKFTKEADKVVKMTIAKALKDSVNG 95 >gi|260431902|ref|ZP_05785873.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157] gi|260415730|gb|EEX08989.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157] Length = 95 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K + + + N I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGTDKKSANAALEAITNLITREVSAGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN T + + +VV + LK + Sbjct: 61 ERQVRNPATGETFTKEADKVVKMTIAKALKDSVN 94 >gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894254|gb|EFG74011.1| histone family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 211 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDVLTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + R Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 94 >gi|253582110|ref|ZP_04859334.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836459|gb|EES64996.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 111 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + V+ + G+ ++ ++ + + + + V+GE + F F ++ +R Sbjct: 6 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + +K++ ++V F+A L +++ Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96 >gi|297194088|ref|ZP_06911486.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197720925|gb|EDY64833.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 93 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|255009412|ref|ZP_05281538.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis 3_1_12] gi|313147171|ref|ZP_07809364.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] gi|313135938|gb|EFR53298.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12] Length = 96 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S+ G + KD++ +TTL ++I G AI I F F VK+K R+ Sbjct: 1 MNNKEFTSELSRRLGYNTKDTSDLITTLLSDIIQELQEGNAIGIQGFGAFEVKKKAERIV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ FK S ILK + + Sbjct: 61 INPVTRLRLLVPPKLVLAFKPSPILKDKFKEA 92 >gi|325168608|ref|YP_004280398.1| DNA binding protein [Agrobacterium sp. H13-3] gi|325064331|gb|ADY68020.1| DNA binding protein [Agrobacterium sp. H13-3] Length = 92 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++V+ I+ E L++ + V T+F I +A G I F F +K R R Sbjct: 3 TTNEIVEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +K+ + + F+ + LK + Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALKDVLNK 92 >gi|154493959|ref|ZP_02033279.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC 43184] gi|154086219|gb|EDN85264.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC 43184] Length = 91 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + RS L+ ++++ GL++KD R + + I G+ I + F +F + + SR Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RNL+ V++ PR ++ FK + L +++ Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMNK 91 >gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacterium sp. MCS] gi|119868006|ref|YP_937958.1| nucleoid protein Hbs [Mycobacterium sp. KMS] gi|126434491|ref|YP_001070182.1| nucleoid protein Hbs [Mycobacterium sp. JLS] gi|108769310|gb|ABG08032.1| bacterial nucleoid protein Hbs [Mycobacterium sp. MCS] gi|119694095|gb|ABL91168.1| bacterial nucleoid protein Hbs [Mycobacterium sp. KMS] gi|126234291|gb|ABN97691.1| bacterial nucleoid protein Hbs [Mycobacterium sp. JLS] Length = 225 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 51/94 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +++ + G R+ +T V + + I + +G+++ I+ F F +++ +RV Sbjct: 1 MNKAELIDALTTKMGTDRRQATEAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ P V F+ + K + + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAIVSGAQK 94 >gi|3913403|sp|Q45352|DBH_BORPR RecName: Full=DNA-binding protein HBbu gi|1280569|gb|AAC73077.1| histone-like protein HBbu [Borrelia parkeri] Length = 108 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+SD+V IS L +K V F E+ +S I+ SF TF ++++ Sbjct: 9 VTKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKR 68 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + V +D V F+ LK + Sbjct: 69 KGRQNARNPQTGEYVNVDDHHVAYFRPGKDLKDGVWG 105 >gi|317504625|ref|ZP_07962592.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606] gi|315664246|gb|EFV03946.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606] Length = 91 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 36/63 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ I+ GLS+ ++ + + I ++ V+G+ I++ F TF V ++ +R G Sbjct: 1 MNKTELIDKIAAGAGLSKAEAKKALDATTAAIKEALVKGDKIQLVGFGTFSVNERPAREG 60 Query: 65 RNL 67 N Sbjct: 61 INP 63 >gi|298489534|ref|ZP_07007542.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298155938|gb|EFH97050.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 97 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T ++I ++VV F ++ +L I Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 94 >gi|304321185|ref|YP_003854828.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503] gi|303300087|gb|ADM09686.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503] Length = 95 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV---RGEAIKISSFATFHVKQKGS 61 +++++ + +++ +S ++ R V +F EI + I +F TF + ++ + Sbjct: 1 MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R GRN +T +E+KI + + F+ SS LK Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLKAA 91 >gi|296273437|ref|YP_003656068.1| histone family protein DNA-binding protein [Arcobacter nitrofigilis DSM 7299] gi|296097611|gb|ADG93561.1| histone family protein DNA-binding protein [Arcobacter nitrofigilis DSM 7299] Length = 91 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++ + +++ + GLS+KD+ V ++ I ++ V+ E++ F TF + +R Sbjct: 1 MNKAEFIDAVATKAGLSKKDAKCAVDSVLETITETLVKNESVSFIGFGTFSTAARAARTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + T++ V + V FK LK+ + Sbjct: 61 KVPGTDRTVDVKATTVAKFKVGKALKEAVAK 91 >gi|126734354|ref|ZP_01750101.1| DNA-binding protein HU [Roseobacter sp. CCS2] gi|126717220|gb|EBA14084.1| DNA-binding protein HU [Roseobacter sp. CCS2] Length = 91 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV ++++E G+ +K + + + I G A+ + + +++ R+ Sbjct: 1 MTKAQLVTALAEETGMDKKAAGSALDAVTGIITKEVSGGGAVTLPGVGKIYCRERPERMV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +++K D +VV + LK + Sbjct: 61 RNPATGEQIKKDADKVVKMTIAKALKDSVNG 91 >gi|330969241|gb|EGH69307.1| HU family DNA-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 93 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAESIEAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >gi|126730363|ref|ZP_01746174.1| histone-like DNA-binding protein [Sagittula stellata E-37] gi|126709096|gb|EBA08151.1| histone-like DNA-binding protein [Sagittula stellata E-37] Length = 108 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 44/94 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV +++++ +K + + +L I G A+ + + +++ Sbjct: 14 MAKPMTKTQLVAALAEKMDADKKTANAALDSLVEIITSEVADGGAVTLPGVGKIYCRERP 73 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ RN T ++ K + + V + LK + Sbjct: 74 ERMVRNPATGEQFKKEADKQVKMTIAKALKDSVN 107 >gi|254389768|ref|ZP_05004992.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294812896|ref|ZP_06771539.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] gi|326441327|ref|ZP_08216061.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] gi|197703479|gb|EDY49291.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064] gi|294325495|gb|EFG07138.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064] Length = 93 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|254884846|ref|ZP_05257556.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] gi|254837639|gb|EET17948.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA] Length = 94 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++L K I+ + G + + V +L I S + E + + F +F +K++ + Sbjct: 1 MTKAELCKKITDQTGCDMQTVSAIVESLMVSIKGSLEKEENVYLRGFGSFIIKRRAEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + I + FK++ + Sbjct: 61 RNISKNTTIIIPAHNIPAFKSAKEFTDLVSK 91 >gi|330995080|ref|ZP_08318997.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] gi|332879536|ref|ZP_08447231.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] gi|329576656|gb|EGG58159.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] gi|332682502|gb|EGJ55404.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 92 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 +T++++V ISK+ G+ + V + +S + + + + F +F +K++ + Sbjct: 1 MTKAEIVNEISKKTGIDKATVLTAVEAFMESVKESLIQKEDNVYLRGFGSFILKKRAKKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN+ N + ID + FK + + I Sbjct: 61 ARNISKNTTIIIDEHNIPAFKPAKVFVDAIKK 92 >gi|49188573|ref|YP_025670.1| single-stranded binding protein [Pseudomonas syringae pv. maculicola] gi|47525156|gb|AAT35169.1| single-stranded binding protein [Pseudomonas syringae pv. maculicola] Length = 97 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARNALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T + I ++VV F ++ +L I Sbjct: 62 GRNPSTGASIDIAAKKVVKFVSAKVLNDAINKG 94 >gi|288926972|ref|ZP_06420868.1| DNA-binding protein HU [Prevotella buccae D17] gi|315608920|ref|ZP_07883892.1| DNA-binding protein HU [Prevotella buccae ATCC 33574] gi|288336255|gb|EFC74640.1| DNA-binding protein HU [Prevotella buccae D17] gi|315249300|gb|EFU29317.1| DNA-binding protein HU [Prevotella buccae ATCC 33574] Length = 97 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +++ G +++ + + V + E+ D E + I+ F +F VK++ R+ Sbjct: 1 MNNKEYINELARRSGYTQEVTRKLVHDVVAEMTDRLGESETVSIAGFGSFEVKKRLERIL 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ V+ F+ + +K+++ + Sbjct: 61 VNPSTKQRMLVPPKLVLSFRPVASVKEKLKNG 92 >gi|126739059|ref|ZP_01754753.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6] gi|126719676|gb|EBA16384.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6] Length = 94 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K + S L+++I++E S++ ++ L +I +A G I F ++ Sbjct: 1 MGK-LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERA 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R GRN T E++I + FK + K R+ Sbjct: 60 ARKGRNPSTGVEIEIAASSSLSFKPAKAAKDRLN 93 >gi|110677982|ref|YP_680989.1| DNA-binding protein HU [Roseobacter denitrificans OCh 114] gi|163732504|ref|ZP_02139949.1| DNA-binding protein HU [Roseobacter litoralis Och 149] gi|109454098|gb|ABG30303.1| DNA-binding protein HU [Roseobacter denitrificans OCh 114] gi|161393864|gb|EDQ18188.1| DNA-binding protein HU [Roseobacter litoralis Och 149] Length = 95 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 45/95 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E +K + + + N I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMDTDKKSAGAALDAVCNLITKEVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T ++ K D +VV + LK + Sbjct: 61 ERMVRNPATGEQFKKDADKVVKMTIAKALKDSVNG 95 >gi|256838928|ref|ZP_05544438.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|256739847|gb|EEU53171.1| integration host factor, alpha subunit [Parabacteroides sp. D13] Length = 95 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +LVK+++ + +++ ++ RFV ++ ++ + F T ++ R+G Sbjct: 1 MNRRELVKTLADKLSVTQVEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWKQTERIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 RN + I R+ V FK +L KR+ Sbjct: 61 RNPRNGVAYIIRARKSVKFKPGKLLLKRLNAS 92 >gi|99082641|ref|YP_614795.1| histone-like DNA-binding protein [Ruegeria sp. TM1040] gi|99038921|gb|ABF65533.1| histone-like DNA-binding protein [Ruegeria sp. TM1040] Length = 97 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++E +K + + + N I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVAALAEEMDSDKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R RN T ++ + +VV + LK + + Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96 >gi|77457211|ref|YP_346716.1| histone-like DNA-binding protein [Pseudomonas fluorescens Pf0-1] gi|77381214|gb|ABA72727.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 93 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALDQLGQIVADQLENGGEITLPGIGKLKVTERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ + L + Sbjct: 62 GRNPSTGAAIEIPAKKVIKLVVAKGLTDAVNK 93 >gi|19704153|ref|NP_603715.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|254303834|ref|ZP_04971192.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|296328641|ref|ZP_06871158.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714367|gb|AAL95014.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|148324026|gb|EDK89276.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|296154240|gb|EFG95041.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 91 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + K + ++ +R ++ + V +F+ I + GE + I ++ + ++ R+ Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFDSIEKILLDGENLSIINWGKLEIVERAPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EVKI R+ V F+ +++ Sbjct: 61 GRNPKTGEEVKIGKRKSVKFRPGKAFLEKLN 91 >gi|119477609|ref|ZP_01617759.1| integration host factor, beta subunit [marine gamma proteobacterium HTCC2143] gi|119449112|gb|EAW30352.1| integration host factor, beta subunit [marine gamma proteobacterium HTCC2143] Length = 68 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 40 AVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 GE I+I F +F + + R GRN +T + V+++ + V FK +++R+ + ++ Sbjct: 7 LASGERIEIRGFGSFSLHYREPRQGRNPKTGEAVELNGKYVPHFKPGKEMRERVNESLQ 65 >gi|296113089|ref|YP_003627027.1| integration host factor subunit beta [Moraxella catarrhalis RH4] gi|295920783|gb|ADG61134.1| integration host factor subunit beta [Moraxella catarrhalis RH4] gi|326560082|gb|EGE10472.1| integration host factor subunit beta [Moraxella catarrhalis 46P47B1] gi|326560465|gb|EGE10847.1| integration host factor subunit beta [Moraxella catarrhalis 7169] gi|326561668|gb|EGE12005.1| integration host factor subunit beta [Moraxella catarrhalis 103P14B1] gi|326564204|gb|EGE14440.1| integration host factor subunit beta [Moraxella catarrhalis 12P80B1] gi|326565803|gb|EGE15965.1| integration host factor subunit beta [Moraxella catarrhalis BC1] gi|326570456|gb|EGE20496.1| integration host factor subunit beta [Moraxella catarrhalis BC8] gi|326571139|gb|EGE21163.1| integration host factor subunit beta [Moraxella catarrhalis BC7] gi|326573433|gb|EGE23401.1| integration host factor subunit beta [Moraxella catarrhalis 101P30B1] gi|326575671|gb|EGE25594.1| integration host factor subunit beta [Moraxella catarrhalis CO72] gi|326577137|gb|EGE27031.1| integration host factor subunit beta [Moraxella catarrhalis O35E] Length = 99 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M I +S+L+ +++ L V + + + V I++ F +F + + Sbjct: 1 MQAVINKSNLIANLASVCEELEEDVVDEAVRLMIAMMVNELVYDGRIEVRGFGSFCLHHR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+ RN +T + V + + FK L++ + Sbjct: 61 SARIARNPRTGESVSVKAKATPYFKPGKALRESVN 95 >gi|99034453|ref|ZP_01314451.1| hypothetical protein Wendoof_01000745 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 101 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 33/86 (38%), Positives = 50/86 (58%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + I++E GLS++D + + +EI S V+ +KISSF TF VK+K R G T Sbjct: 16 IAGDINQEIGLSKEDYVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 +++V I R V F+ S I+KK I + Sbjct: 76 SEKVMIQARNSVSFRPSKIIKKSINN 101 >gi|168187176|ref|ZP_02621811.1| DNA-binding protein HU 1 [Clostridium botulinum C str. Eklund] gi|169294964|gb|EDS77097.1| DNA-binding protein HU 1 [Clostridium botulinum C str. Eklund] Length = 95 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ S++++ L++KD+ + + ++ G+ +++ F TF +++ R G Sbjct: 1 MNKTELLNSMAEKAVLTKKDAELALKAFIESVKEALKEGKKVQLIGFGTFETREQKGRTG 60 Query: 65 -RNL--QTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + + + V VFKA LK+ + + Sbjct: 61 TINFGSKKGETYTSKDKIVPVFKAGRQLKEIVDN 94 >gi|46201151|ref|ZP_00055681.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 87 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + K+I G + + V + I D + F TF ++ +R G Sbjct: 1 MSKTAISKAIRTATGCTVAQADEAVDAVIATILDGVKTEGRFGLIGFGTFSKSERPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN +T + ++I + FKASS LKK Sbjct: 61 RNPRTGKTIEIKASSTIKFKASSALKK 87 >gi|257469123|ref|ZP_05633217.1| hypothetical protein FulcA4_07245 [Fusobacterium ulcerans ATCC 49185] gi|317063369|ref|ZP_07927854.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|313689045|gb|EFS25880.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] Length = 106 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + V+ + G+ ++ ++ + + + + V+GE + F F ++ +R Sbjct: 1 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT + +K++ ++V F+A L +++ Sbjct: 61 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 91 >gi|119962186|ref|YP_949429.1| DNA-binding protein HU [Arthrobacter aurescens TC1] gi|119949045|gb|ABM07956.1| DNA-binding protein HU [Arthrobacter aurescens TC1] Length = 95 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K RS+LV ++ + G S+ + LF S GE I I + + Sbjct: 1 MAK--NRSELVAEVAGKAGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRA 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASS 87 +R GRN QT + ++I V A S Sbjct: 59 ARTGRNPQTGETIQIAAGHSVKLTAGS 85 >gi|302534743|ref|ZP_07287085.1| integration host factor, beta subunit [Streptomyces sp. C] gi|302443638|gb|EFL15454.1| integration host factor, beta subunit [Streptomyces sp. C] Length = 93 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89 >gi|218260115|ref|ZP_03475545.1| hypothetical protein PRABACTJOHN_01206 [Parabacteroides johnsonii DSM 18315] gi|218224732|gb|EEC97382.1| hypothetical protein PRABACTJOHN_01206 [Parabacteroides johnsonii DSM 18315] Length = 101 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + LV+ IS + + TL + I DS + E + I +F +F + + SR Sbjct: 1 MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM---DDMRGRKC 102 RN +T + + PR V F L + DDM K Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLLNRQADDMESDKA 101 >gi|94984283|ref|YP_603647.1| histone-like protein DNA-binding protein [Deinococcus geothermalis DSM 11300] gi|94554564|gb|ABF44478.1| histone-like protein DNA-binding protein [Deinococcus geothermalis DSM 11300] Length = 116 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 43/84 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ +V I++ LSRK ++ V T+ + I + G+ + + T V + +R G Sbjct: 30 KTQIVDQIAERTSLSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTETAARTGVR 89 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T++ ++I + + FK ++ LK Sbjct: 90 PGTSERIQIPAGKKIRFKVATTLK 113 >gi|254463816|ref|ZP_05077227.1| DNA-binding protein HU [Rhodobacterales bacterium Y4I] gi|206684724|gb|EDZ45206.1| DNA-binding protein HU [Rhodobacterales bacterium Y4I] Length = 95 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 44/95 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++E G +K + + + + I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVAALAEEMGSDKKTAGSALEAVCSLITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN T ++ + +VV + LK + Sbjct: 61 EREVRNPATGEKFTKEADKVVKMTIAKALKDSVNG 95 >gi|289628684|ref|ZP_06461638.1| single-stranded binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 95 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARNALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN T ++I ++ + F + +L I + Sbjct: 62 GRNPSTGASIEIAAKKAIKFVPAKVLNDSINKGL 95 >gi|241518439|ref|YP_002979067.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862852|gb|ACS60516.1| histone family protein DNA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 92 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+ + L++ V + I +A+ G + F F VK R R Sbjct: 3 TTNEIADKIAGDHSLTKAQGKAIVEAVIASITQAAMDGNETSLPGFGKFKVKATPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +K+ + + F + LK + Sbjct: 63 NPATGATIKVAAAKKLAFTPAKALKDALNK 92 >gi|328882764|emb|CCA56003.1| Non-specific DNA-binding protein HBsu [Streptomyces venezuelae ATCC 10712] Length = 93 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + I V A S LK+ Sbjct: 61 ARNPQTGDPIDIPAGYSVKVSAGSKLKEA 89 >gi|269121288|ref|YP_003309465.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] gi|268615166|gb|ACZ09534.1| histone family protein DNA-binding protein [Sebaldella termitidis ATCC 33386] Length = 92 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 41/73 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ + +++ +K G ++K S V + S +GE ++ + TF V+++ +R G Sbjct: 1 MSKKEFIEAYAKATGETKKRSEELVNEFLGTVEKSLTKGETVQFVGWGTFGVQKRAARKG 60 Query: 65 RNLQTNQEVKIDP 77 RN QT +E+KI Sbjct: 61 RNPQTGKEIKIAA 73 >gi|86136850|ref|ZP_01055428.1| DNA-binding protein HU [Roseobacter sp. MED193] gi|85826174|gb|EAQ46371.1| DNA-binding protein HU [Roseobacter sp. MED193] Length = 97 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 43/96 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV +++ E G +K + + + I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVAALADEMGEDKKTAGAALEAVCALITSEVSAGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R RN T ++ + +VV + LK + + Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96 >gi|303235684|ref|ZP_07322291.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] gi|302484131|gb|EFL47119.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] Length = 95 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 48/92 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +++ + G ++ ++ + V T + D+ GE +S F F VK++ R+ Sbjct: 1 MNNKEFIAALANKTGRTQDETEKLVKTALQAMGDNFESGEPFLVSGFGAFEVKKRMERIM 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ V+ F+A+ +K+++ Sbjct: 61 VNPGTGQRMLVPPKLVLGFRATQSVKEKLKKG 92 >gi|325297733|ref|YP_004257650.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324317286|gb|ADY35177.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 97 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 48/97 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +L +++ G +D+ + V ++ + + G+ + ++ F TF VK++ R+ Sbjct: 1 MNNKELTNELARRLGYENQDAAQLVNSMVTMMSEQLQEGKTLVLADFGTFEVKKELERIE 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 N T Q + P+ V+ FK ++ K+++ + + Sbjct: 61 VNPLTKQRFLVPPKLVLTFKPAAAFKEKLKNTRAIHE 97 >gi|190014828|ref|YP_001967592.1| orf_Bo196 [Agrobacterium tumefaciens] gi|71849631|gb|AAZ50579.1| orf_Bo196 [Agrobacterium tumefaciens] Length = 92 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ + I+ E L++ + V T+F I +A G I F F +K R R Sbjct: 3 TTNEIAEKIASEQNLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +K+ + + F+ + LK + Sbjct: 63 NPATGATIKVAAAKKLTFQPAKALKDVLNK 92 >gi|226357673|ref|YP_002787412.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] gi|226319915|gb|ACO47908.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] Length = 121 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 46/84 (54%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ +V I+ GL++K S V+ + I ++ G+++ + T V++ +R G Sbjct: 35 KTQMVDMIADRAGLTKKQSEEVVSVMLESIVEAVRSGKSVGLPGLGTLSVRETAARTGVR 94 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T+++++I + + FKA++ LK Sbjct: 95 PGTSEKIQIAAGKKLAFKAATTLK 118 >gi|254446217|ref|ZP_05059693.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] gi|198260525|gb|EDY84833.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235] Length = 104 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEA--------------IKIS 49 + +S+L+ I G S+ ++ + ++ + + I + + I++ Sbjct: 1 MNKSELIAEIQSNLGASSKAEAEKALSAVLSSIKTAVKKAGKEVKLRDKDSKDAVAIQLV 60 Query: 50 SFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 F TF V ++ +R G N T + +KI + V FKA + LK ++ Sbjct: 61 GFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKDQL 104 >gi|163737907|ref|ZP_02145323.1| histone-like DNA-binding protein [Phaeobacter gallaeciensis BS107] gi|163743911|ref|ZP_02151282.1| DNA-binding protein HU [Phaeobacter gallaeciensis 2.10] gi|161382852|gb|EDQ07250.1| DNA-binding protein HU [Phaeobacter gallaeciensis 2.10] gi|161388523|gb|EDQ12876.1| histone-like DNA-binding protein [Phaeobacter gallaeciensis BS107] Length = 95 Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++E +K + + + I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVAALAEEMDSDKKAAGAALDAVCALITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN T ++ + +VV + LK + Sbjct: 61 EREVRNPATGEKFTKEADKVVKMTIAKALKDSVNG 95 >gi|11514467|pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Transcription Factor 1. gi|11514468|pdb|1EXE|B Chain B, Solution Structure Of A Mutant Of Transcription Factor 1 Length = 99 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 48/88 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K+I+++ GL++ ++ + + I ++ +G+ ++++ F + +R G Sbjct: 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N QT + ++I P V K LKK Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKKA 88 >gi|195952487|ref|YP_002120777.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932099|gb|ACG56799.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 102 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSA--VRGEAIKISSFATFHVK 57 + + DL+ + + L ++D +R + N + D+ + I++S F TF++K Sbjct: 1 MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 ++ R+GRN +T KI PR + FK S ++ Sbjct: 61 ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVN 97 >gi|296129746|ref|YP_003636996.1| histone family protein DNA-binding protein [Cellulomonas flavigena DSM 20109] gi|296021561|gb|ADG74797.1| histone family protein DNA-binding protein [Cellulomonas flavigena DSM 20109] Length = 93 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 48/92 (52%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ R++LV++++++ GL+ D+ + + L + + G ++ I F ++ +R Sbjct: 2 SVNRTELVQAVAEKAGLTNVDADKALKALQEVVVEQLAAGGSVSIPGFLAVARAERAART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N QT ++++I V A S LK+ + Sbjct: 62 GVNPQTGEKLEIPAGHRVKITAGSALKRAVQG 93 >gi|254455329|ref|ZP_05068758.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082331|gb|EDZ59757.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp. HTCC7211] Length = 99 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 50/99 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+ DLV + + G S++ S + + I + + +K+S F TF ++QK Sbjct: 1 MRINLTKKDLVNLVYMQLGFSKQISENLIEDFLSTIIKNIKLEKKLKLSKFGTFSIRQKK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 SR+GRN +T + I R VV+FK S K I G Sbjct: 61 SRIGRNPKTKESKIISSRDVVLFKPSKEFKDFINLKDNG 99 >gi|254454440|ref|ZP_05067877.1| DNA-binding protein HU [Octadecabacter antarcticus 238] gi|198268846|gb|EDY93116.1| DNA-binding protein HU [Octadecabacter antarcticus 238] Length = 96 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 46/94 (48%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +T++ LV +++++ G +K ++ + + I G A+ + + +++ Sbjct: 3 TKPMTKTQLVAALAEDMGTDKKSASAALDAMVGLITREVSGGGAVTLPGVGKIYCRERPE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D +VV + LK + Sbjct: 63 RMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 96 >gi|254166674|ref|ZP_04873528.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|254168488|ref|ZP_04875332.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|289596099|ref|YP_003482795.1| histone family protein DNA-binding protein [Aciduliprofundum boonei T469] gi|197622543|gb|EDY35114.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|197624284|gb|EDY36845.1| DNA-binding protein HU [Aciduliprofundum boonei T469] gi|289533886|gb|ADD08233.1| histone family protein DNA-binding protein [Aciduliprofundum boonei T469] Length = 89 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 47/83 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K+++K+ G+S+K + + +E+ D +G + + F F + + +R RN Sbjct: 5 SELAKTVAKKTGVSQKQARMVIRAFVDEVIDQVNKGNKVNLVGFGIFERRVQKARKARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 +T + + + ++ VF+ASS +K Sbjct: 65 RTKEVINVPEKKKFVFRASSKIK 87 >gi|78224249|ref|YP_385996.1| histone-like DNA-binding protein [Geobacter metallireducens GS-15] gi|78195504|gb|ABB33271.1| Histone-like DNA-binding protein [Geobacter metallireducens GS-15] Length = 70 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 V L +I + R + IKI+ F F VK+K R GRN QT + + I RRV+ FK S+ Sbjct: 1 MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA 60 Query: 88 ILKKRIMDD 96 +LK I + Sbjct: 61 VLKNSINGE 69 >gi|15672862|ref|NP_267036.1| HU-like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|12723810|gb|AAK04978.1|AE006322_6 HU-like DNA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|12830842|gb|AAK08215.1|AF320914_2 HllB [Lactococcus lactis] gi|326406426|gb|ADZ63497.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis CV56] Length = 115 Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 46/91 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+ ++ LS+ ++ + + I G + IS+F TF V+++ +RV + Sbjct: 4 KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGTPVHISNFGTFEVRKRAARVSHD 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 + + +++ + + + VF+A LK ++ Sbjct: 64 VHSREKILVGEQNIPVFRAGKALKLATKQEL 94 >gi|182438375|ref|YP_001826094.1| putative DNA-binding protein HU 1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|239941634|ref|ZP_04693571.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL 15998] gi|239988096|ref|ZP_04708760.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL 11379] gi|282865174|ref|ZP_06274227.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] gi|291445076|ref|ZP_06584466.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998] gi|326779026|ref|ZP_08238291.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] gi|178466891|dbj|BAG21411.1| putative DNA-binding protein Hu 1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|282560097|gb|EFB65646.1| histone family protein DNA-binding protein [Streptomyces sp. ACTE] gi|291348023|gb|EFE74927.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998] gi|320010510|gb|ADW05360.1| histone family protein DNA-binding protein [Streptomyces flavogriseus ATCC 33331] gi|326659359|gb|EGE44205.1| histone family protein DNA-binding protein [Streptomyces cf. griseus XylebKG-1] Length = 93 Score = 90.4 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV +++ ++RKD+ + L + + +G E + I F TF + +R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + I V A S LK+ Sbjct: 61 ARNPQTGDPINIPAGYSVKVSAGSKLKEA 89 >gi|110639133|ref|YP_679342.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406] gi|110281814|gb|ABG60000.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406] Length = 90 Score = 90.4 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 36/66 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ +I+ E L++ DS R + N + +GE++ + F +F + +R G Sbjct: 1 MNKAELIDAIAAESKLTKADSKRALDAFLNATGKALKKGESVVLIGFGSFKTATRAARNG 60 Query: 65 RNLQTN 70 RN QT Sbjct: 61 RNPQTG 66 >gi|254386635|ref|ZP_05001932.1| histone-like DNA-binding protein [Streptomyces sp. Mg1] gi|194345477|gb|EDX26443.1| histone-like DNA-binding protein [Streptomyces sp. Mg1] Length = 93 Score = 90.4 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L I + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAETIGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT ++I V A S LK+ Sbjct: 61 ARNPQTGDPIQIPAGFSVKVSAGSKLKEA 89 >gi|313206026|ref|YP_004045203.1| bacterial nucleoid protein hbs [Riemerella anatipestifer DSM 15868] gi|312445342|gb|ADQ81697.1| bacterial nucleoid protein Hbs [Riemerella anatipestifer DSM 15868] gi|325336533|gb|ADZ12807.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer RA-GD] Length = 96 Score = 90.4 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + +S+L+ ++K+ +++ + + + + N + ++ + + + + F TF V ++ +R Sbjct: 1 MNKSELIDVMAKDAEITKAAAKKALESFVNAVTETLKKKDGKVSLVGFGTFSVAERAARQ 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T + +KI ++V FKA S L + + Sbjct: 61 GINPATKKAIKIPAKKVAKFKAGSELADAVAGAKK 95 >gi|260425403|ref|ZP_05779383.1| DNA-binding protein HU [Citreicella sp. SE45] gi|260423343|gb|EEX16593.1| DNA-binding protein HU [Citreicella sp. SE45] Length = 95 Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 45/95 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K ++ + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGADKKTASAALDAITGIITKEVADGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T ++ K + + V + LK + Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALKDSVNG 95 >gi|325300201|ref|YP_004260118.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324319754|gb|ADY37645.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 90 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++LVK IS+ G + + +E+ S RG+ + + SF TF +K + +V Sbjct: 1 MTKAELVKEISQTTGTDSVTILSVIESFMSEVKSSLERGDEVTLRSFGTFCLKHRAEKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RNL N + I + FK S+ KR+ Sbjct: 61 RNLSLNTSMVIPEHDIPSFKPSTEFLKRLK 90 >gi|34762422|ref|ZP_00143422.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741782|ref|ZP_04572263.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256845110|ref|ZP_05550568.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_36A2] gi|294785602|ref|ZP_06750890.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] gi|27887890|gb|EAA24958.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429430|gb|EEO39642.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256718669|gb|EEU32224.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_36A2] gi|294487316|gb|EFG34678.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] Length = 91 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 5 ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+ + K + ++ G+ +R ++ + V +FN + + GE + I +F V ++ R Sbjct: 1 MTKKEFAKLLFEK-GIFTTRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +GRN +T +EVKI R+ + F+ +++ Sbjct: 60 LGRNPKTGEEVKIGKRKSIKFRPGKAFLEKLN 91 >gi|189220184|ref|YP_001940824.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] gi|189187042|gb|ACD84227.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum infernorum V4] Length = 99 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 6 TRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++ LV+ + K G ++ + + V + N + ++ +++ F TF V + +R+ Sbjct: 10 NKASLVEVVQKNMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRKARM 69 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N +T +++KI + V F LK+++ Sbjct: 70 GVNPKTGEKIKIKASKTVRFSPGKELKEKL 99 >gi|332827120|gb|EGJ99905.1| hypothetical protein HMPREF9455_03778 [Dysgonomonas gadei ATCC BAA-286] Length = 96 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T +L+ +++K G +++ ++ + + I + G +I I F F K+KG R+ Sbjct: 1 MTNQELIAALAKRLGWTQRQTSEVLEATVSIINSNLEDGNSINIQGFGLFETKKKGERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + Q + P+ + F+ +K + + Sbjct: 61 VNPVSKQRFLVPPKISLAFRPGQTIKDNLKN 91 >gi|1580711|dbj|BAA11644.1| HupB, beta-subunit of HU [Escherichia coli W3110] Length = 54 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+ + + F TF VK++ +R GRN QT +E+ I +V F+A LK + Sbjct: 1 KEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 54 >gi|189485571|ref|YP_001956512.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287530|dbj|BAG14051.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 89 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+VK +S GL++ DS + + L I + I +S +F K + +R G Sbjct: 1 MKKPDIVKQVSDISGLTQGDSNKAIKALVKVIQITLKNNGVISLSGLGSFRAKTRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I P + V FK ++ L+K I Sbjct: 61 RNPKTKEVILIPPGKKVSFKPTTTLRKII 89 >gi|46446802|ref|YP_008167.1| putative integration host factor [Candidatus Protochlamydia amoebophila UWE25] gi|46400443|emb|CAF23892.1| putative integration host factor [Candidatus Protochlamydia amoebophila UWE25] Length = 120 Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L+ SIS++ G+ D + ++I D +GE ++ F F V ++ ++GRN + Sbjct: 24 LINSISQDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRNPKN 83 Query: 70 NQ-EVKIDPRRVVVFKASSILKKRIM 94 + I R+ V F +++ + Sbjct: 84 AAVPIVIPARQAVKFTPGKKMRQVVE 109 >gi|325989776|ref|YP_004249475.1| Histone-like DNA-binding superfamily protein HimA [Mycoplasma suis KI3806] gi|323574861|emb|CBZ40521.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration host factor (himA/hup_1) [Mycoplasma suis] Length = 102 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 44/92 (47%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+K ++ + G ++ + + I ++ + + + F +F V ++ +R G N Sbjct: 4 KDELIKHLADKCGCTQNNVASVLREYQYLILENLKKEGKVNVLEFGSFEVVKRSARTGVN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 QT ++ I + V KAS K+ + ++ Sbjct: 64 PQTKAKIDIPEKEVPRLKASKKFKEFVSGQVK 95 >gi|313185029|gb|ADR50079.1| histone-like protein HBbu [Borrelia burgdorferi] Length = 108 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 IT+SD+V IS L +K + F E+ + I+ SF TF V+++ Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68 Query: 60 GSR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN QT + VK V F+ LK+R+ Sbjct: 69 KGRLNARNPQTGEYVKGLDHHVAYFRPGKDLKERVWG 105 >gi|114765808|ref|ZP_01444901.1| DNA-binding protein HU [Pelagibaca bermudensis HTCC2601] gi|114541807|gb|EAU44844.1| DNA-binding protein HU [Roseovarius sp. HTCC2601] Length = 95 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 45/95 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV ++++E G +K ++ + + I G A+ + + +++ Sbjct: 1 MAKPMTKTQLVAALAEEMGADKKTASTALDAITGIITKEVAEGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T ++ K + + V + LK + Sbjct: 61 ERMVRNPATGEQFKKEADKQVKMTIAKALKDSVNG 95 >gi|237744930|ref|ZP_04575411.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|256028389|ref|ZP_05442223.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|260494711|ref|ZP_05814841.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33] gi|289766314|ref|ZP_06525692.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|229432159|gb|EEO42371.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|260197873|gb|EEW95390.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33] gi|289717869|gb|EFD81881.1| DNA-binding protein HU [Fusobacterium sp. D11] Length = 91 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + K + ++ +R ++ + V +FN + + GE + I +F V ++ R+ Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +EVKI R+ + F+ +++ Sbjct: 61 GRNPKTGEEVKIGKRKSIKFRPGKAFLEKLN 91 >gi|189464081|ref|ZP_03012866.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM 17393] gi|198275171|ref|ZP_03207702.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM 17135] gi|255010947|ref|ZP_05283073.1| putative HU-like DNA binding protein [Bacteroides fragilis 3_1_12] gi|298482410|ref|ZP_07000596.1| DNA-binding protein HU [Bacteroides sp. D22] gi|313148752|ref|ZP_07810945.1| predicted protein [Bacteroides fragilis 3_1_12] gi|317477426|ref|ZP_07936654.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|189438415|gb|EDV07400.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM 17393] gi|198271991|gb|EDY96261.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM 17135] gi|298271389|gb|EFI12964.1| DNA-binding protein HU [Bacteroides sp. D22] gi|313137519|gb|EFR54879.1| predicted protein [Bacteroides fragilis 3_1_12] gi|316906408|gb|EFV28134.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 92 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + + + I F TF + +R+ Sbjct: 3 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + V++ + VV FK S Sbjct: 62 RNPATGEPVEVPEKEVVKFKPSK 84 >gi|325973340|ref|YP_004250404.1| DNA-binding protein [Mycoplasma suis str. Illinois] gi|323651942|gb|ADX98024.1| DNA-binding protein [Mycoplasma suis str. Illinois] Length = 102 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 44/92 (47%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+K ++ + G ++ + + I ++ + + + F +F V ++ +R G N Sbjct: 4 KDELIKHLADKCGCTQNNVASVLREYQYLILENLKKEGKVNVLEFGSFEVVKRSARTGIN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 QT ++ I + V KAS K+ + ++ Sbjct: 64 PQTKAKIDIPEKEVPRLKASKKFKEFVSGQVK 95 >gi|325283874|ref|YP_004256415.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] gi|324315683|gb|ADY26798.1| histone family protein DNA-binding protein [Deinococcus proteolyticus MRP] Length = 94 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 1 MSK-TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M+K + +++L IS++ GLSRK + V + + D+ +G + + + TF + Q Sbjct: 1 MNKGKVAKAELAARISEQTGLSRKQAGDVVASAVGLMVDALKQGRTVGLPNLGTFSISQT 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R G T + + I + V FK S+ L+ ++ Sbjct: 61 SQRQGVRPGTTERITIPAGKKVRFKISTGLRDQL 94 >gi|83309465|ref|YP_419729.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82944306|dbj|BAE49170.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 89 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++S + K+I + G + + V + I + + F +F ++ +R G Sbjct: 1 MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F S+ LKK + Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89 >gi|289650209|ref|ZP_06481552.1| single-stranded binding protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 97 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVVGIAEAIDAPKTTARKTLEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T ++I ++VV F ++ +L I Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 94 >gi|256379997|ref|YP_003103657.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] gi|255924300|gb|ACU39811.1| histone family protein DNA-binding protein [Actinosynnema mirum DSM 43827] Length = 285 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++++++ G +K++ V + + I S +GE + I+ F F + + +R Sbjct: 1 MNKAQLIEALAERLG-DKKNAAAAVDGIVDVIVRSVHKGEKVNITGFGVFEKRARAARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ V F+A S K I + Sbjct: 60 RNPRTGETVKVKKTNVPAFRAGSTFKDVISGAKK 93 >gi|302544965|ref|ZP_07297307.1| DNA-binding protein HU [Streptomyces hygroscopicus ATCC 53653] gi|307331132|ref|ZP_07610259.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] gi|302462583|gb|EFL25676.1| DNA-binding protein HU [Streptomyces himastatinicus ATCC 53653] gi|306883212|gb|EFN14271.1| histone family protein DNA-binding protein [Streptomyces violaceusniger Tu 4113] Length = 93 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAEVTGEVVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKEA 89 >gi|126738405|ref|ZP_01754110.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6] gi|126720204|gb|EBA16910.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6] Length = 97 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++E G +K + + + I G A+ + + +++ Sbjct: 1 MSKPMTKTQLVATLAEEMGADKKTAGAALEAVCALITREVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R RN T ++ + +VV + LK + + Sbjct: 61 EREVRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96 >gi|253572936|ref|ZP_04850333.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251837463|gb|EES65557.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 92 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + + + I F TF + +R+ Sbjct: 3 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + V++ + VV FK S Sbjct: 62 RNPATGEPVEVPEKEVVKFKPSK 84 >gi|254456031|ref|ZP_05069460.1| integration host factor beta-subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083033|gb|EDZ60459.1| integration host factor beta-subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 97 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 7 RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +S L+K +S +KD +F + EI ++ RG+ +++ F F + +R+ R Sbjct: 5 KSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKARISR 64 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N +T ++V ++ + FK S L K++ D+ + Sbjct: 65 NPKTGEKVNTPQKKTIHFKMSKDLFKKLNDEEQ 97 >gi|223937617|ref|ZP_03629520.1| histone family protein DNA-binding protein [bacterium Ellin514] gi|223893780|gb|EEF60238.1| histone family protein DNA-binding protein [bacterium Ellin514] Length = 95 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 2/96 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +++S L +I+ + G+++K + + + +A + + + Sbjct: 1 MAKALSKSQLAAAIADKNGITKKQAVEILDHIAELAYKNAKN--TFTLPGLGKLVLVNRK 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +RVGRN T +++ I +RVV F+ + K I+ Sbjct: 59 ARVGRNPATGEQINIPAKRVVKFRVAKAAKDSILGA 94 >gi|330891782|gb|EGH24443.1| single-stranded binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 104 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 41/98 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 ++T+ + I++ + + + + L + D G I + V ++ +R Sbjct: 2 SLTKDQFIAGIAEAIDAPKNTTGKALDQLGQIVADQLGNGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 GR+ T ++I ++V+ F + L I + +K Sbjct: 62 GRHPSTGAAIEIAAKKVIKFVPAKRLNDAINNGAPQKK 99 >gi|297159968|gb|ADI09680.1| DNA-binding protein HU 1 [Streptomyces bingchenggensis BCW-1] Length = 93 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV 63 + RS+LV ++S+ ++RKD+ + L + +G E + I F TF + +R Sbjct: 1 MNRSELVAALSERAEVTRKDADAVLAALAEVTGEIVAKGDEKVTIPGFLTFERTHRAART 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN QT + ++I V A S LK+ Sbjct: 61 ARNPQTGEPIEIPAGYSVKVSAGSKLKEA 89 >gi|253582555|ref|ZP_04859776.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835425|gb|EES63965.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 91 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + + + ++ D+ R N I + ++ E I F F V ++ + Sbjct: 1 MTKKEFINLYFTKGEFKTKTDAERKAAAFLNLIEEVLLKEEEITFLGFGKFKVIERAPKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN QT +++KI+ ++VV FK S L ++I Sbjct: 61 CRNPQTGKKMKIEAKKVVKFKPSKTLSEKIK 91 >gi|226354832|ref|YP_002784572.1| DNA-binding protein HU [Deinococcus deserti VCD115] gi|226316822|gb|ACO44818.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus deserti VCD115] Length = 115 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 40/84 (47%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ L++ ++ L++K + V T+ + + G + + T V Q +R G Sbjct: 29 KTQLIEMVADRTSLNKKQAGDAVATMLECVVGALREGRNVGLPGLGTLSVAQTAARTGVR 88 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T++++ I + + FK +S LK Sbjct: 89 PGTSEKITIPAGKKIRFKVASTLK 112 >gi|15618331|ref|NP_224616.1| integration host factor Alpha [Chlamydophila pneumoniae CWL029] gi|15835949|ref|NP_300473.1| integration host factor alpha [Chlamydophila pneumoniae J138] gi|16752623|ref|NP_444887.1| integration host factor beta-subunit, putative [Chlamydophila pneumoniae AR39] gi|33241765|ref|NP_876706.1| integration host factor beta chain [Chlamydophila pneumoniae TW-183] gi|9789718|sp|Q9Z8C7|DBH_CHLPN RecName: Full=Probable DNA-binding protein HU gi|4376697|gb|AAD18560.1| Integration Host Factor Alpha [Chlamydophila pneumoniae CWL029] gi|7189266|gb|AAF38192.1| integration host factor beta-subunit, putative [Chlamydophila pneumoniae AR39] gi|8978788|dbj|BAA98624.1| integration host factor alpha [Chlamydophila pneumoniae J138] gi|33236274|gb|AAP98363.1| integration host factor beta chain [Chlamydophila pneumoniae TW-183] gi|269303292|gb|ACZ33392.1| DNA-binding protein HU [Chlamydophila pneumoniae LPCoLN] Length = 100 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94 GRN + + I RR V F +K+ I Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIE 94 >gi|254885106|ref|ZP_05257816.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA] gi|254837899|gb|EET18208.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA] Length = 90 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + + + I F TF + +R+ Sbjct: 1 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + V++ + VV FK S Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSK 82 >gi|255689974|ref|ZP_05413649.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] gi|260624581|gb|EEX47452.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565] Length = 71 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + + + + ++ GE + + F TF V ++ R G N T + I ++V FK Sbjct: 2 TKKALDAFVTSVTNAMKAGEKVSLVGFGTFSVSERAERTGINPSTKATITIPAKKVAKFK 61 Query: 85 ASSILKKRIM 94 A + L + Sbjct: 62 AGAELSAAVE 71 >gi|299068805|emb|CBJ40046.1| DNA-binding protein HU-beta [Ralstonia solanacearum CMR15] Length = 91 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 37/80 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K ++ + +S+ + + L + D+ G + I F ++ ++ G Sbjct: 1 MNKQELIKHLAAQAEVSKGKAEDLLNALTTTVLDTVRAGNELTIPDLGKFGSVERAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFK 84 RN +T ++I +R F Sbjct: 61 RNPKTGSPIQIAAKRAPKFT 80 >gi|29840141|ref|NP_829247.1| integration host factor beta-subunit, putative [Chlamydophila caviae GPIC] gi|62184997|ref|YP_219782.1| integration host factor alpha-subunit [Chlamydophila abortus S26/3] gi|89898437|ref|YP_515547.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56] gi|332287322|ref|YP_004422223.1| integration host factor alpha-subunit [Chlamydophila psittaci 6BC] gi|29834489|gb|AAP05125.1| integration host factor beta-subunit, putative [Chlamydophila caviae GPIC] gi|62148064|emb|CAH63818.1| integration host factor alpha-subunit [Chlamydophila abortus S26/3] gi|89331809|dbj|BAE81402.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56] gi|313847906|emb|CBY16901.1| integration host factor alpha-subunit [Chlamydophila psittaci RD1] gi|325507160|gb|ADZ18798.1| integration host factor alpha-subunit [Chlamydophila psittaci 6BC] gi|328914565|gb|AEB55398.1| integration host factor, beta subunit, putative [Chlamydophila psittaci 6BC] Length = 100 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94 GRN + + I RR V F +K+ I Sbjct: 63 GRNPKNATVPIHIPARRAVKFTPGKRMKRLIE 94 >gi|52421248|ref|YP_087160.1| DNA binding protein HU [Bacteroides fragilis YCH46] gi|52218769|dbj|BAD51361.1| DNA binding protein HU [Bacteroides fragilis YCH46] Length = 90 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+K ++ E G KD + + T E+ + + E + I F TF + +R+ Sbjct: 1 MNKKDLIKVVATETGFPMKDVQKTIDTFLKELSEEVNK-EDVAIKDFGTFKTVIQKARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + V++ ++V+ FK S Sbjct: 60 RNPATGELVEVPEKKVLKFKPSK 82 >gi|160889559|ref|ZP_02070562.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC 8492] gi|156861076|gb|EDO54507.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC 8492] Length = 404 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I +S + + +KI TF + G Sbjct: 1 MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIIN 94 >gi|254440395|ref|ZP_05053889.1| DNA-binding protein HU [Octadecabacter antarcticus 307] gi|198255841|gb|EDY80155.1| DNA-binding protein HU [Octadecabacter antarcticus 307] Length = 96 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 46/94 (48%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +T++ LV +++++ G +K ++ + + I G A+ + + +++ Sbjct: 3 TKPMTKTQLVAALAEDMGTDKKSASASLDAIVGLITREVSGGGAVTLPGVGKIYCRERPE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D +VV + LK + Sbjct: 63 RMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 96 >gi|237707812|ref|ZP_04538293.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA] gi|229458140|gb|EEO63861.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA] Length = 90 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ T + + F E+ + + + I F TF + +R+ Sbjct: 1 MNKTDLIKMVAEKANKPTKEVTEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + V++ + VV FK S Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSK 82 >gi|114769939|ref|ZP_01447549.1| DNA-binding protein HU, form N [alpha proteobacterium HTCC2255] gi|114549644|gb|EAU52526.1| DNA-binding protein HU, form N [alpha proteobacterium HTCC2255] Length = 96 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 1 MS-KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 MS K +T++ LV ++++ G + + R + L + + G A+ + F + + Sbjct: 1 MSQKPMTKTQLVANLAEATGSDKVTANRALEALADIVSKEVAAGGAVTLPGLGKFQCRAR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T ++ RV + LK I D Sbjct: 61 PERMVRNPATGEQFMKAADRVAKVTIAKALKDVIND 96 >gi|60650162|ref|YP_209715.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC 9343] gi|60495242|emb|CAH05736.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC 9343] Length = 90 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DL+K ++++ K+ + + F E+ + + + I F TF + +R+ Sbjct: 1 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + V++ + VV FK S Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSK 82 >gi|237744441|ref|ZP_04574922.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|256027212|ref|ZP_05441046.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|260494006|ref|ZP_05814137.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33] gi|289765189|ref|ZP_06524567.1| DNA-binding protein HU [Fusobacterium sp. D11] gi|229431670|gb|EEO41882.1| DNA-binding protein HU [Fusobacterium sp. 7_1] gi|260198152|gb|EEW95668.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33] gi|289716744|gb|EFD80756.1| DNA-binding protein HU [Fusobacterium sp. D11] Length = 102 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 39/69 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V I D+ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETIEDALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQEV 73 +N QT + + Sbjct: 61 KNPQTGKMI 69 >gi|148244693|ref|YP_001219387.1| integration host factor, beta subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326520|dbj|BAF61663.1| integration host factor, beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 92 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ++S LS+ D+ V + E+ V GE ++I F F+ K + +R G Sbjct: 1 MKKPDLILNLSNSSNLSKTDAKIAVEVILEELTQGIVSGEGVEIRGFGGFYKKYRKARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T++ ++ + V FK LK+ I Sbjct: 61 INPKTSERTEVSEKFVPFFKPGKFLKEIINK 91 >gi|149201305|ref|ZP_01878280.1| DNA-binding protein HU [Roseovarius sp. TM1035] gi|149145638|gb|EDM33664.1| DNA-binding protein HU [Roseovarius sp. TM1035] Length = 91 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV +++ + G +K + + + I G A+ + + +++ R+ Sbjct: 1 MTKTQLVAALADDMGSDKKTAGAALDAVIAIITREVSAGGAVTLPGIGKIYCRERPERMV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T +++K + +VV + LK + Sbjct: 61 RNPATGEQMKKEADKVVKMTIAKALKDSVNG 91 >gi|53713715|ref|YP_099707.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60681986|ref|YP_212130.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis NCTC 9343] gi|265764039|ref|ZP_06092607.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|52216580|dbj|BAD49173.1| DNA-binding protein HU [Bacteroides fragilis YCH46] gi|60493420|emb|CAH08206.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis NCTC 9343] gi|263256647|gb|EEZ27993.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16] gi|301163424|emb|CBW22975.1| putative histone-like DNA-binding protein HU2 [Bacteroides fragilis 638R] Length = 96 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S+ G + K ++ +T+L ++I AI I F TF VK+K R+ Sbjct: 1 MNNKEFTSELSRRLGYNTKYTSELITSLLSDITQELQESNAIGIQGFGTFEVKKKAERIV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + P+ V+ FK S ILK + + Sbjct: 61 INPVTKLRLLVPPKLVLAFKPSPILKDKFKE 91 >gi|332703149|ref|ZP_08423237.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] gi|332553298|gb|EGJ50342.1| histone family protein DNA-binding protein [Desulfovibrio africanus str. Walvis Bay] Length = 95 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 6 TRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T++ V+S+ + ++ + + + E +++ + +F + + SR Sbjct: 3 TKTQFVESLRQALPDVFTTKVSAEKAFDVFCETLAQGIKSNEGVRLPNVGSFALSARASR 62 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN QT QE+ I ++VV F S LK+ + Sbjct: 63 TGRNPQTGQEITIPEKKVVKFTTSKTLKEDLN 94 >gi|330444386|ref|YP_004377372.1| histone-like DNA-binding protein [Chlamydophila pecorum E58] gi|328807496|gb|AEB41669.1| Bacterial histone-like DNA-binding protein [Chlamydophila pecorum E58] Length = 100 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN + + I R+ V F +K+ I + Sbjct: 63 GRNPKNAAVPIHIPARKAVKFTPGKRMKRLIETPNK 98 >gi|169825341|ref|YP_001691234.1| hypothetical protein M446_6976 [Methylobacterium sp. 4-46] gi|168199263|gb|ACA21209.1| hypothetical protein M446_6976 [Methylobacterium sp. 4-46] Length = 102 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RS + I++ L + V + + I + G +++ F F + +R Sbjct: 1 MLRSQFTRRIAELNPHLRSGQANAVVRAVLDRIAEGLADGSRVELRGFGAFKTVTRDARP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN +T + V + +R V FKAS + KR+ Sbjct: 61 SRNPRTGELVTVPAKRDVKFKASVEVTKRLN 91 >gi|182412327|ref|YP_001817393.1| histone family protein DNA-binding protein [Opitutus terrae PB90-1] gi|177839541|gb|ACB73793.1| histone family protein DNA-binding protein [Opitutus terrae PB90-1] Length = 91 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++LV + K G S + R V + + R + +++ F F V + +R Sbjct: 1 MNKAELVDEVRKLLGAETSTAAAERAVDAVLAAVTRGLHRDKEVQLVGFGAFAVATRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 G N T Q +KI + + FKA L+ Sbjct: 61 RGFNPHTQQPMKIRAMKTIRFKAGQALRA 89 >gi|144898899|emb|CAM75763.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum gryphiswaldense MSR-1] Length = 87 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 41/87 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + K+I + + V L I D ++ F TF ++ +R G Sbjct: 1 MSKTAISKAIRTATSCTAAQADEAVDALVATILDGVKSEGRFRMIGFGTFSKSERPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT + ++I + FKASS LKK Sbjct: 61 RNPQTGKTIEIAASSTIKFKASSSLKK 87 >gi|270296683|ref|ZP_06202882.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272670|gb|EFA18533.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 393 Score = 88.8 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I +S + + +KI TF + G Sbjct: 1 MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIIN 94 >gi|240142432|ref|YP_002966942.1| putative integration host factor [Methylobacterium extorquens AM1] gi|240012376|gb|ACS43601.1| Putative integration host factor [Methylobacterium extorquens AM1] Length = 140 Score = 88.8 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 50/96 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T ++L ++ GL ++++R V + + + GE +K+ F F V+ + +R Sbjct: 45 MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 ++ + +E+++ RR VF+ S +L++ + R Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALNRSSEDR 140 >gi|317480051|ref|ZP_07939163.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] gi|316903793|gb|EFV25635.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36] Length = 393 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I +S + + +KI TF + G Sbjct: 1 MNEKLNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIIN 94 >gi|291513675|emb|CBK62885.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL 8301] Length = 89 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ DL+ + + G + + + I + R E + + F TF K++ + Sbjct: 1 MTKQDLITVVGSKTGQNDSHVRPIIEATLDAIKECVQRKEPVYLRGFGTFQPKKRAEKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ + + V FK S Sbjct: 61 RNITAGTTIIVPAHEVAHFKPSKSF 85 >gi|116511709|ref|YP_808925.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|116107363|gb|ABJ72503.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris SK11] Length = 120 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 43/84 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+ ++ LS+ ++ + + I G + IS+F TF V++ +R+ + Sbjct: 4 KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 + + +++ + + + VF+A LK Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87 >gi|284032739|ref|YP_003382670.1| histone family protein DNA-binding protein [Kribbella flavida DSM 17836] gi|283812032|gb|ADB33871.1| histone family protein DNA-binding protein [Kribbella flavida DSM 17836] Length = 197 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSRV 63 + +S LV++++ F +R+ + + ++ + + +G + I+ F F ++G+R+ Sbjct: 1 MNKSQLVEALAVHFDGNRRSAQHALESVIDTVQRELTKKGGKVAITGFGAFEAIERGARM 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + + V F+A + LK + + Sbjct: 61 VRNPRTGETKRAKKTVVPKFRAGAELKAVVSGAKK 95 >gi|218259923|ref|ZP_03475438.1| hypothetical protein PRABACTJOHN_01099 [Parabacteroides johnsonii DSM 18315] gi|218224840|gb|EEC97490.1| hypothetical protein PRABACTJOHN_01099 [Parabacteroides johnsonii DSM 18315] Length = 99 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R D+ K + G+ FV + D + G + I F +F ++ SR Sbjct: 1 MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +T + ++PR V F L +++ D+ ++ Sbjct: 61 RNPRTGEPCMLEPRTSVKFNPGKTLFEKMNTDLVDKQ 97 >gi|15604988|ref|NP_219772.1| integration host factor alpha-subunit [Chlamydia trachomatis D/UW-3/CX] gi|15835156|ref|NP_296915.1| integration host factor beta subunit, putative [Chlamydia muridarum Nigg] gi|76788989|ref|YP_328075.1| integration host factor alpha-subunit [Chlamydia trachomatis A/HAR-13] gi|166154478|ref|YP_001654596.1| integration host factor alpha-subunit [Chlamydia trachomatis 434/Bu] gi|166155353|ref|YP_001653608.1| integration host factor alpha-subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802690|ref|YP_002887884.1| integration host factor alpha-subunit [Chlamydia trachomatis B/Jali20/OT] gi|237804612|ref|YP_002888766.1| integration host factor alpha-subunit [Chlamydia trachomatis B/TZ1A828/OT] gi|255311068|ref|ZP_05353638.1| integration host factor alpha-subunit [Chlamydia trachomatis 6276] gi|255317369|ref|ZP_05358615.1| integration host factor alpha-subunit [Chlamydia trachomatis 6276s] gi|255348627|ref|ZP_05380634.1| integration host factor alpha-subunit [Chlamydia trachomatis 70] gi|255503167|ref|ZP_05381557.1| integration host factor alpha-subunit [Chlamydia trachomatis 70s] gi|255506845|ref|ZP_05382484.1| integration host factor alpha-subunit [Chlamydia trachomatis D(s)2923] gi|270285328|ref|ZP_06194722.1| integration host factor alpha-subunit [Chlamydia muridarum Nigg] gi|270289344|ref|ZP_06195646.1| integration host factor alpha-subunit [Chlamydia muridarum Weiss] gi|301335738|ref|ZP_07223982.1| integration host factor alpha-subunit [Chlamydia trachomatis L2tet1] gi|301336725|ref|ZP_07224927.1| integration host factor alpha-subunit [Chlamydia muridarum MopnTet14] gi|54036943|sp|P64387|DBH_CHLMU RecName: Full=Probable DNA-binding protein HU gi|54040776|sp|P64386|DBH_CHLTR RecName: Full=Probable DNA-binding protein HU gi|3328679|gb|AAC67860.1| Integration Host Factor Alpha [Chlamydia trachomatis D/UW-3/CX] gi|7190578|gb|AAF39378.1| integration host factor beta subunit, putative [Chlamydia muridarum Nigg] gi|76167519|gb|AAX50527.1| integration host factor alpha-subunit [Chlamydia trachomatis A/HAR-13] gi|165930466|emb|CAP03959.1| integration host factor alpha-subunit [Chlamydia trachomatis 434/Bu] gi|165931341|emb|CAP06913.1| integration host factor alpha-subunit [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272912|emb|CAX09823.1| integration host factor alpha-subunit [Chlamydia trachomatis B/TZ1A828/OT] gi|231273924|emb|CAX10716.1| integration host factor alpha-subunit [Chlamydia trachomatis B/Jali20/OT] gi|289525306|emb|CBJ14782.1| integration host factor alpha-subunit [Chlamydia trachomatis Sweden2] gi|296434856|gb|ADH17034.1| integration host factor alpha-subunit [Chlamydia trachomatis E/150] gi|296435783|gb|ADH17957.1| integration host factor alpha-subunit [Chlamydia trachomatis G/9768] gi|296436708|gb|ADH18878.1| integration host factor alpha-subunit [Chlamydia trachomatis G/11222] gi|296437643|gb|ADH19804.1| integration host factor alpha-subunit [Chlamydia trachomatis G/11074] gi|296438576|gb|ADH20729.1| integration host factor alpha-subunit [Chlamydia trachomatis E/11023] gi|297140142|gb|ADH96900.1| integration host factor alpha-subunit [Chlamydia trachomatis G/9301] gi|297748397|gb|ADI50943.1| Integration host factor beta-subunit [Chlamydia trachomatis D-EC] gi|297749277|gb|ADI51955.1| Integration host factor beta-subunit [Chlamydia trachomatis D-LC] Length = 100 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T+ L+ +IS++ + + +++ D+ V+G+ ++ F V ++ +V Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62 Query: 64 GRNLQTNQ-EVKIDPRRVVVFKASSILKKRIMDDMR 98 GRN + + I RR V F +K+ I + Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTK 98 >gi|83747725|ref|ZP_00944760.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|207743976|ref|YP_002260368.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum IPO1609] gi|83725635|gb|EAP72778.1| DNA-binding protein HU [Ralstonia solanacearum UW551] gi|206595378|emb|CAQ62305.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum IPO1609] Length = 91 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+K ++ + +++ + + L I D+ G + I+ F ++ ++ G Sbjct: 1 MTKQELIKHLADKAEVTKGKAEDLLNALTETILDTVRAGNELTITDLGKFGSVERAAKTG 60 Query: 65 RNLQTNQEVKIDPRRVVVF 83 RN +T + I +R F Sbjct: 61 RNPKTGDVIAIAAKRAPKF 79 >gi|189425695|ref|YP_001952872.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] gi|189421954|gb|ACD96352.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ] Length = 96 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 41/87 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++DLV ++ + G+++ + + + + G+ + + F TF + +R G Sbjct: 1 MKKADLVAKMATDAGITKAQAEKALAAFTAATEAALKAGDKVTLVGFGTFSTISRKARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN QT +E+KI + F LK Sbjct: 61 RNPQTGKEIKIAAKTSAKFSPGKGLKD 87 >gi|15606646|ref|NP_214026.1| DNA binding protein HU [Aquifex aeolicus VF5] gi|14194592|sp|O67461|DBH_AQUAE RecName: Full=DNA-binding protein HU gi|2983862|gb|AAC07415.1| DNA binding protein HU [Aquifex aeolicus VF5] Length = 94 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 5 ITRSDLVKSISKEF------GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+ ++ + I + +K+ V+ +F I + ++GE +KIS F TF VK Sbjct: 1 MTKKEIAEEIYDRLIRDYNVKIQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKT 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 + + G N++ + V++ R++V+FK S Sbjct: 61 RKPKKGMNIKKREIVEVPERKIVLFKPSKNF 91 >gi|320321166|gb|EFW77307.1| single-stranded binding protein [Pseudomonas syringae pv. glycinea str. B076] Length = 104 Score = 88.0 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L I++ + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLAAGIAEAIDAPNTTGRKALEQLGQIVADQLGNGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN T ++I ++VV F + +L I + + NK Sbjct: 62 GRNPSTGAAIEIAAKKVVKFVPAKVLNDVINNGASQKTANKT 103 >gi|58039587|ref|YP_191551.1| DNA-binding protein HU-beta [Gluconobacter oxydans 621H] gi|58002001|gb|AAW60895.1| DNA-binding protein HU-beta [Gluconobacter oxydans 621H] Length = 89 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ L + + + R V + + I + + SF TF V + +R Sbjct: 1 MSKAFLAAVLQDSMNCTGVVAQRAVNDMIDAIIEELREEGGFTLPSFGTFTVCETKARQA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + V++ R V FKAS LK+ + Sbjct: 61 VNPRTGEPVEVSAGRTVRFKASPGLKQLV 89 >gi|70728443|ref|YP_258192.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens Pf-5] gi|68342742|gb|AAY90348.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens Pf-5] Length = 93 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 AITKDQLIADIAEAIDAPKTTARNALDQLAQIVADQLENGGEITLPGIGKLKVTERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ + L + Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93 >gi|66044337|ref|YP_234178.1| histone-like DNA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|63255044|gb|AAY36140.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae pv. syringae B728a] Length = 93 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 41/92 (44%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + + D +G I + + V ++ +R Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >gi|306521780|ref|ZP_07408127.1| DNA-binding protein HU [Clostridium difficile QCD-32g58] Length = 64 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE-VKIDPRRVVVFKASSILKK 91 + + D+ V E +++ F TF +++ +R GRN + ++ + I + VFKA LK Sbjct: 1 MSSVQDALVNNEKVQLVGFGTFETRERAARQGRNPRDPEQVIDIPASKAPVFKAGKGLKD 60 Query: 92 RIMD 95 I Sbjct: 61 IING 64 >gi|302039319|ref|YP_003799641.1| transcriptional dual regulator HU-beta [Candidatus Nitrospira defluvii] gi|300607383|emb|CBK43716.1| Transcriptional dual regulator HU-beta [Candidatus Nitrospira defluvii] Length = 95 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 8/98 (8%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV---RGEAIKISSFATFHVK 57 M+K++T+S + ++ + G+++K + +F+ + A + + Sbjct: 1 MAKSMTKSQIADHLAGKAGITKKTAVQFLDDF-----AALAYREAKNAFVVPGIGKLVLA 55 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + +R+GRN QT + +KI +RVV F+ + + K I+ Sbjct: 56 NRKARMGRNPQTGEPIKIPAKRVVKFRVAKMAKDSILG 93 >gi|237741958|ref|ZP_04572439.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256845298|ref|ZP_05550756.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_36A2] gi|294785402|ref|ZP_06750690.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] gi|229429606|gb|EEO39818.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13] gi|256718857|gb|EEU32412.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_36A2] gi|294487116|gb|EFG34478.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27] Length = 102 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 39/69 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V + D+ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQEV 73 +N QT + + Sbjct: 61 KNPQTGKMI 69 >gi|262276735|ref|ZP_06054528.1| integration host factor subunit beta (IHF-beta) [alpha proteobacterium HIMB114] gi|262223838|gb|EEY74297.1| integration host factor subunit beta (IHF-beta) [alpha proteobacterium HIMB114] Length = 103 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Query: 1 MSK-TITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 MSK T +SD+VK + F + + + ++F + ++ G I+I TF VK+ Sbjct: 1 MSKKTFVKSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKK 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +R RN +T + ++I+ + V +K+S +L RI D + + Sbjct: 61 MPARNARNPKTGETIQIEEKNKVKWKSSKLLNYRINKDKKIEE 103 >gi|262198187|ref|YP_003269396.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] gi|262081534|gb|ACY17503.1| histone family protein DNA-binding protein [Haliangium ochraceum DSM 14365] Length = 105 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 13/103 (12%) Query: 5 ITRSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIK--------ISSFA 52 +T+ +L+ + ++G L++K + +F E+ D V+ E + F Sbjct: 1 MTKQELIDRVYAKYGKPANLTKKAVGDIIGGVFEELSDYFVK-EKVTKKLTPRFTFPGFG 59 Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 TF K + +R GR+ QT E+ I + F S LK + + Sbjct: 60 TFTKKHREARKGRHPQTGAEITIGATDTLTFSIGSDLKATMNE 102 >gi|329963577|ref|ZP_08301056.1| LysM domain protein [Bacteroides fluxus YIT 12057] gi|328528566|gb|EGF55537.1| LysM domain protein [Bacteroides fluxus YIT 12057] Length = 379 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 47/94 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+KD+ FV F + +S + + +KI TF + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKDADSFVKEFFLLVEESLEKDKYVKIKGLGTFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + ++I V F LK+ I Sbjct: 61 SRESVNVNTGERIEIQGHTKVTFTPEPSLKEVIN 94 >gi|152993465|ref|YP_001359186.1| DNA-binding protein HU [Sulfurovum sp. NBC37-1] gi|151425326|dbj|BAF72829.1| DNA-binding protein HU [Sulfurovum sp. NBC37-1] Length = 93 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++ V+ + K S+ + R V + ++ V + + + F TF + Sbjct: 1 MTKAEFVELVQKNGEFESKAAAERAVKAFITSVTEALVNKDTVSLVGFGTFSTVDVAEKS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ TN+ FK LK + + Sbjct: 61 GKVPGTNKTYTKPAHTAPKFKIGKTLKDAVAGN 93 >gi|330811521|ref|YP_004355983.1| DNA-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379629|gb|AEA70979.1| putative DNA-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 93 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ +++ + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADLAESVDAPKATVRSLLDQLGQVVADQLENGGEITLPGVGKLKVTERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ + L + Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93 >gi|228982427|ref|ZP_04142686.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] gi|228776610|gb|EEM24918.1| DNA-binding protein HU [Bacillus thuringiensis Bt407] Length = 94 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ + + LS+ ++ V T N I ++ GE + + F F K++ SR Sbjct: 1 MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R + +EV++ + + F+ K ++ Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKVE 90 >gi|301166851|emb|CBW26428.1| integration host factor beta-subunit [Bacteriovorax marinus SJ] Length = 108 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++DL+ +I K+ L+ K + + F+ + S E I+I F +F + + G Sbjct: 8 MTKADLIAAIEKQANLTHKQAESIINICFDSMIKSLYNDERIEIRGFGSFANRNYKAYEG 67 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ P++V FK L++ + Sbjct: 68 RNPKTGKVVKVPPKKVPFFKVGKELREMV 96 >gi|167950382|ref|ZP_02537456.1| integration host factor, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 122 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+S+L++ + K + L+ +D + + ++ + GE I+I F +F + + R+ Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60 Query: 64 GRNLQTN 70 GRN + Sbjct: 61 GRNPKNG 67 >gi|260222772|emb|CBA32664.1| Integration host factor subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 103 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + RSDL+ ++ F + +KD+ V +F+E+ ++ V+G I+I +F + + S Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RN +T +++K R + FK L+ R+ G Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRMAGGNSG 96 >gi|110347039|ref|YP_665857.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1] gi|110283150|gb|ABG61210.1| histone-like DNA-binding protein [Chelativorans sp. BNC1] Length = 92 Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 5 ITRS-DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + ++ I+ GL++ + V ++F EI +A G I +F F K+ +R Sbjct: 1 MTSANEIADKIAGAHGLTKAQAKTIVESVFKEIAGAAAAGAETSIPAFGKFKPKKTAARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I + F + LK + Sbjct: 61 GRNPSTGATIRIAASTKLTFTPAKALKDALNG 92 >gi|332884203|gb|EGK04471.1| hypothetical protein HMPREF9456_00798 [Dysgonomonas mossii DSM 22836] Length = 445 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 50/94 (53%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ ++ DL+ ++K+ +++K++ F+ L I ++ E++KI F TF + + Sbjct: 1 MNERLSLQDLIDLLAKKQEITKKEAEVFLRELIAVISETIESNESVKIKDFGTFKLVKVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R ++ T + ++I + F +LK+ I Sbjct: 61 ARKSVDVNTGEAIEIAAHYKLSFTPDKLLKEAIN 94 >gi|254303147|ref|ZP_04970505.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323339|gb|EDK88589.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 102 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 39/69 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V + D+ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQEV 73 +N QT + + Sbjct: 61 KNPQTGKMI 69 >gi|124506647|ref|XP_001351921.1| bacterial histone-like protein [Plasmodium falciparum 3D7] gi|23504948|emb|CAD51732.1| bacterial histone-like protein [Plasmodium falciparum 3D7] gi|227300960|emb|CAR57919.1| plastid histone-like protein HU precursor [Plasmodium falciparum] Length = 189 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 53/103 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ IT+ +++ +S E ++K + + +F+ I E I I F F+ + Sbjct: 54 MSQAITKKQIIEEVSMETKENKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMFYNIFRK 113 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R +NL+T ++++I+ + FK S + K+ I +++ +K Sbjct: 114 KRCIKNLRTKEDIEIESSHMPHFKFSKVFKELIKQNVKVKKGK 156 >gi|71083197|ref|YP_265916.1| integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1062] gi|91762373|ref|ZP_01264338.1| Integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1002] gi|71062310|gb|AAZ21313.1| Integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1062] gi|91718175|gb|EAS84825.1| Integration host factor beta-subunit (IHF-beta) [Candidatus Pelagibacter ubique HTCC1002] Length = 96 Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 7 RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +S L+K ++ +KD +F + EI + RG+ +++ F F + +R+ R Sbjct: 5 KSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARISR 64 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N +T ++V ++ + FK S + K++ +D Sbjct: 65 NPKTGEKVNTPEKKTIHFKMSKEMFKKLNND 95 >gi|313159618|gb|EFR58978.1| putative DNA-binding protein HU [Alistipes sp. HGB5] Length = 92 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+VK +++E G+ V E+ + +R E + + F TF +K + + Sbjct: 1 MTKADIVKQLAQETGVEAVTVLAVVEGFMEEVRAAQIRKENVFLRGFGTFLIKHRKEKTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN+ N +KI + FK S Sbjct: 61 RNITKNTTIKIPAHDIPAFKPSPAF 85 >gi|159045828|ref|YP_001534622.1| DNA-binding protein HU [Dinoroseobacter shibae DFL 12] gi|157913588|gb|ABV95021.1| DNA-binding protein HU [Dinoroseobacter shibae DFL 12] Length = 96 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 45/94 (47%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +T++ LV ++++ L +K + + L + + G A+ + + +++ Sbjct: 3 AKPLTKTQLVAALAEGAELDKKTAAATLDALTSIVTKEVTDGGAVTLPGIGKIYCRERPE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D +VV + LK + Sbjct: 63 RMVRNPATGEQIKKDADKVVKVTIAKALKDSVNG 96 >gi|281419890|ref|ZP_06250889.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri DSM 18205] gi|281406017|gb|EFB36697.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri DSM 18205] Length = 96 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 49/92 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++++ G S++D+ + V + + GEA+ I +F TF VK++ RV Sbjct: 1 MNNKEYIAELAQQTGYSQEDTQKLVRKAIDAMIAEFEDGEAVSIPNFGTFEVKKRMERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + P+ V+ F+ + +K+++ + Sbjct: 61 VNPTTKKRQLVPPKLVLGFRPVASVKEKLKNG 92 >gi|83942118|ref|ZP_00954580.1| DNA-binding protein HU [Sulfitobacter sp. EE-36] gi|83953173|ref|ZP_00961895.1| DNA-binding protein HU [Sulfitobacter sp. NAS-14.1] gi|83842141|gb|EAP81309.1| DNA-binding protein HU [Sulfitobacter sp. NAS-14.1] gi|83847938|gb|EAP85813.1| DNA-binding protein HU [Sulfitobacter sp. EE-36] Length = 91 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 44/91 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV ++++E G +K ++ + + I G A+ + + +++ R+ Sbjct: 1 MTKTQLVAALAEEMGEDKKTASAALDAVCALITKEVSGGGAVTLPGIGKIYCRERPERMV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T ++ K D +VV + LK + + Sbjct: 61 RNPATGEQFKKDADKVVKMTIAKALKDSVNE 91 >gi|225873629|ref|YP_002755088.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196] gi|225793084|gb|ACO33174.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196] Length = 98 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T+T++ LV+ ++++ L+ K + F+ L + I ++ Sbjct: 1 MATTMTKTALVRHMAEKLELTNKQAAAFLDLLAETAIKETKKNGVFVIPGLGRLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+GRN QT +++KI + VV F+ + K I Sbjct: 61 ARIGRNPQTGEQIKIKAKTVVKFRVAKSAKDVIA 94 >gi|282601029|ref|ZP_05980488.2| integration host factor, beta subunit [Subdoligranulum variabile DSM 15176] gi|282570392|gb|EFB75927.1| integration host factor, beta subunit [Subdoligranulum variabile DSM 15176] Length = 91 Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS L+ ++ + G++ + + + +F I D G+ + I+ F F ++++ ++ Sbjct: 1 MTRSQLITKVANDTGMTSGEVEKVMDCIFGTIGDVLKGGDKVTIAGFGRFEMRERQTKNF 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T K++P + FKAS LK+++ Sbjct: 61 TNPKTKVTSKLEPTAIPGFKASGRLKEKVAQ 91 >gi|71894500|ref|YP_278608.1| nucleoid DNA-binding protein [Mycoplasma synoviae 53] gi|71851288|gb|AAZ43897.1| bacterial nucleoid DNA-binding protein [Mycoplasma synoviae 53] Length = 91 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++ +K++S + GL+ + R + + V GE +++S+ F V + R Sbjct: 1 MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +N T +E + ++VV +K S L + + Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVNE 91 >gi|254486971|ref|ZP_05100176.1| DNA-binding protein HU [Roseobacter sp. GAI101] gi|214043840|gb|EEB84478.1| DNA-binding protein HU [Roseobacter sp. GAI101] Length = 91 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV ++++E G +K + + + I G A+ + + +++ R+ Sbjct: 1 MTKTQLVAALAEEMGEDKKTAGAALDAVCALITKEVSGGGAVTLPGIGKIYCRERPERMV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T ++ K + +VV + LK + + Sbjct: 61 RNPATGEQFKKEADKVVKMTIAKALKDSVNE 91 >gi|320334434|ref|YP_004171145.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] gi|319755723|gb|ADV67480.1| histone family protein DNA-binding protein [Deinococcus maricopensis DSM 21211] Length = 115 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++ LV ++ L+RK S + I + G+++ + TF V+ R G Sbjct: 29 KTQLVDLVTDRTSLNRKQSAEAIDAALGIIVSALRDGKSVGLPGLGTFAVRATAERTGVK 88 Query: 67 LQTNQEVKIDPRRVVVFKASSILK 90 T++ + I + V FK +S LK Sbjct: 89 PGTSERITIAAGKKVGFKVASTLK 112 >gi|312959161|ref|ZP_07773680.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens WH6] gi|311286931|gb|EFQ65493.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens WH6] Length = 93 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT+ L+ +++ + + L + D G I + V ++ +R Sbjct: 2 AITKDQLIADLAEAVDAPKTTVRALLDQLSQVVADQLENGGEITLPGIGKLKVTERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ + L + Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93 >gi|94967113|ref|YP_589161.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|94549163|gb|ABF39087.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 98 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ +T++ LV+ +++ +S K + F+ +L + I + Sbjct: 1 MASGMTKTQLVRHMAESHEISNKTAAAFLESLAEVAIKETKKNGVFVIPGLGRLVKSNRK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +RVGRN QT + +KI + VV F+ + K I + Sbjct: 61 ARVGRNPQTGEPIKIPAKTVVKFRVAKAAKDSIAPSKK 98 >gi|78355172|ref|YP_386621.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217577|gb|ABB36926.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 95 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 5 ITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+++ V + ++ + + + D + E +++ + V ++ Sbjct: 2 LTKAEFVAAFKDALPEVFETKVSAEKAYDAFCQVLADGIAKNEGVRLPNVGALTVAERAE 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R GRN QT Q + I R+VV F + L + Sbjct: 62 RQGRNPQTGQPMTIPARKVVKFSPAKSLVDGVN 94 >gi|229588591|ref|YP_002870710.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|269864503|ref|XP_002651596.1| DNA-binding protein HU [Enterocytozoon bieneusi H348] gi|220064232|gb|EED42460.1| DNA-binding protein HU [Enterocytozoon bieneusi H348] gi|229360457|emb|CAY47314.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 93 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT+ L+ +++ + + L + D G I + V ++ +R Sbjct: 2 AITKDQLIADLAEAVDAPKTTVRALLDQLSQVVADQLENGGEITLPGVGKLKVTERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN T ++I ++V+ + L + Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93 >gi|56698562|ref|YP_168938.1| DNA-binding protein HU [Ruegeria pomeroyi DSS-3] gi|56680299|gb|AAV96965.1| DNA-binding protein HU [Ruegeria pomeroyi DSS-3] Length = 91 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 39/91 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ LV +++++ G +K ++ + + I G A+ + + +++ R Sbjct: 1 MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN T + +VV + LK + Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSVNG 91 >gi|317484122|ref|ZP_07943052.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] gi|316924626|gb|EFV45782.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKS---ISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+ +L++ ++ ++ D + +L + G + + +++ Sbjct: 1 MTKRELIEKALETARNSHERAMTLADMGAALDSLCEVAAAELLGGGEVSLPGLGKIKMRE 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R GRN +T + + I + VVF LK+ + Sbjct: 61 TAAREGRNPRTGESLHIPAGKKVVFVPGKDLKEALK 96 >gi|167836518|ref|ZP_02463401.1| histone family protein DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 64 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + I + R EA+++ F F Q+ +R GRN T +E+ I V F A LK Sbjct: 1 MDAITGAVSRDEAVQLVGFGAFSRGQRSARTGRNPTTGEEIAIAAANTVRFAAGKALKDA 60 Query: 93 IMDD 96 + Sbjct: 61 VNGS 64 >gi|19704359|ref|NP_603921.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327419|ref|ZP_06869966.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714609|gb|AAL95220.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155432|gb|EFG96202.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 102 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 39/69 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +++ L KDS R V + ++ ++G+ ++ F ++ VK++ +R Sbjct: 1 MTKKEFVNAFAEKGELKIKDSERLVNAFLETVENALLKGDGVRFIGFGSWEVKERSAREV 60 Query: 65 RNLQTNQEV 73 +N QT + + Sbjct: 61 KNPQTGKMI 69 >gi|240047359|ref|YP_002960747.1| nucleoid DNA-binding protein [Mycoplasma conjunctivae HRC/581] gi|239984931|emb|CAT04924.1| Bacterial nucleoid DNA-binding protein [Mycoplasma conjunctivae] Length = 90 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 46/90 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ IS + +S+K+ +++ F E+ + + + I+SF TF K + V Sbjct: 1 MNKKELIEIISAKTEMSQKNVEIILSSFFEEVAHVMKKQDKLVINSFGTFQGIYKEASVS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T E++ + V FK S LK+ + Sbjct: 61 INPLTKSEIRTPAKTVAKFKPSKNLKEFVA 90 >gi|218261010|ref|ZP_03476021.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii DSM 18315] gi|218224259|gb|EEC96909.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii DSM 18315] Length = 136 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+ L+K +++ + + +F+ + I + GE + I F + R GR Sbjct: 45 TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 104 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 NL+T +E KI R V FKAS IL +++ Sbjct: 105 NLRTGEECKIRARTSVKFKASEILIQKLN 133 >gi|71483084|gb|AAZ32517.1| nucleoid DNA binding protein [uncultured euryarchaeote Alv-FOS4] Length = 89 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 49/83 (59%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +++ K ++K+ GLS+K + + E+ + +GE+++I+ F + + +R RN Sbjct: 5 TEISKPVAKKTGLSQKKAREVINAFLEEVLEQVNKGESVRIAGLGIFERRVQKARKVRNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 +T + +K+ ++ +VFK S+ +K Sbjct: 65 RTGKMMKVGEKKKLVFKPSANIK 87 >gi|332879557|ref|ZP_08447252.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682523|gb|EGJ55425.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 90 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S+ G + KD++ + L E+ D I I + +F V++K RV Sbjct: 1 MNNKEFIAELSRRLGYTVKDASSLMVALVAEMTDELEDENVIAIQNIGSFEVRKKQERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T Q + + P+ V+ FK S+ K+++ Sbjct: 61 VNPATQQRMLVPPKLVINFKPSASFKEKMQ 90 >gi|224540004|ref|ZP_03680543.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus DSM 14838] gi|224518371|gb|EEF87476.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus DSM 14838] Length = 471 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + +L++ ++++ G+ + D+ FV F I +S + +KI TF + Sbjct: 1 MNEKLNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F LK I Sbjct: 61 SRESVNINTGERFEIQGHTKVSFAPEPALKDLINK 95 >gi|332884204|gb|EGK04472.1| hypothetical protein HMPREF9456_00799 [Dysgonomonas mossii DSM 22836] Length = 96 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 41/91 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T +L+ +++K +++ ++ + + I + ++ I F F K+K R+ Sbjct: 1 MTNQELIAALAKRLSWTQRQTSEVLEATVSIINSNLEENNSVNIQGFGLFETKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + Q + P+ + F+ +K+ + Sbjct: 61 VNPVSKQRFLVPPKITLSFRPGQTIKENLKK 91 >gi|147678837|ref|YP_001213052.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] gi|146274934|dbj|BAF60683.1| bacterial nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 89 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +LV+ ++ E G+++ + + L + + G ++ + TF + R Sbjct: 1 MRKYELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RNLQT + V + RR++ F+A +K + Sbjct: 61 RNLQTGEPVMVPARRMLSFRAERKYRKGV 89 >gi|256830460|ref|YP_003159188.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256579636|gb|ACU90772.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 109 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 30 TTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 + I ++ +G+ I + +F V +R+GRN +T + + I RR + FK L Sbjct: 44 KAFYAVIREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGL 103 Query: 90 KKRIM 94 ++ + Sbjct: 104 RELLN 108 >gi|227889959|ref|ZP_04007764.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200] gi|227849403|gb|EEJ59489.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200] Length = 64 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 37/61 (60%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TI +++L+K +++ L++ S + + +F+ I ++ + E +++ F +F V+ + +R Sbjct: 3 TINKAELIKEVAESTDLNKTQSDQAIDAVFSAIQNALAKDEKVQLIGFGSFEVRNRAARK 62 Query: 64 G 64 G Sbjct: 63 G 63 >gi|322437337|ref|YP_004219549.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165064|gb|ADW70769.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 98 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 47/94 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ LV++++++ L+ K + F+ L + I ++ Sbjct: 1 MAKGMTKTALVRALAEKMELTNKQTAAFLDLLAETAVKETKKNGEFTIPGIGKLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+GRN QT + +KI + VV F+ + I K I Sbjct: 61 ARLGRNPQTGETIKIKAKTVVKFRVAKIAKDTIA 94 >gi|223935064|ref|ZP_03626983.1| histone family protein DNA-binding protein [bacterium Ellin514] gi|223896517|gb|EEF62959.1| histone family protein DNA-binding protein [bacterium Ellin514] Length = 96 Score = 85.3 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +++S L I+++ +++K + + L +A I + + Sbjct: 1 MAKALSKSQLAAEIAEKNQITKKQAVEILDHLAELAYKNAKN--TFTIPGLGKLVLVNRK 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +R+GRN T + +KI +RVV F+ + K I+ + Sbjct: 59 ARMGRNPATGETIKIAAKRVVKFRVAKAAKDAILGVKK 96 >gi|39939049|ref|NP_950815.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722158|dbj|BAD04648.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 85.3 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K+I++ S + F + + + +S E + +SS F +K + + Sbjct: 1 MTKKELIKNIAEANKTSISKTEEFYNSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT Q++KI + VV FK S +K ++ D Sbjct: 61 GRNPQTGQKLKISAKTVVSFKLSQTIKDKVKD 92 >gi|209972969|ref|YP_002300416.1| TF1 [Bacillus phage SPO1] gi|135625|sp|P04445|TF1_BPSP1 RecName: Full=Transcription factor 1 gi|1942238|pdb|1WTU|A Chain A, Transcription Factor 1, Nmr, Minimized Average Structure gi|1942239|pdb|1WTU|B Chain B, Transcription Factor 1, Nmr, Minimized Average Structure gi|216145|gb|AAA32599.1| transcription factor 1 [Bacillus phage SPO1] gi|209871289|gb|ACI91045.1| TF1 [Bacillus phage SPO1] Length = 99 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 46/88 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+K+I+++ L++ ++ + + ++ +G+ ++++ F + +R G Sbjct: 1 MNKTELIKAIAQDTELTQVSVSKMLASFEKITTETVAKGDKVQLTGFLNIKPVARQARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N QT + ++I P V K LKK Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKKA 88 >gi|75812751|ref|YP_320368.1| histone-like DNA-binding protein [Anabaena variabilis ATCC 29413] gi|75705507|gb|ABA25179.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413] Length = 80 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQ-------KGSRVGRNLQTNQEVKIDPRRVVVFK 84 + + ++ G+ + + F +F + + R GRN QTN+++ I ++ F Sbjct: 10 ITTTVTEAVANGDKVTLVGFGSFERRDHEVCRRYRSEREGRNPQTNEKITIPATKIPAFS 69 Query: 85 ASSILKKRIM 94 A ++++ Sbjct: 70 AGKQFREKVA 79 >gi|75762605|ref|ZP_00742453.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489901|gb|EAO53269.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 76 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 39/62 (62%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +++L+K++++ +S+K++T V T+ I ++ GE +++ F TF V+++ +R Sbjct: 2 KNMNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAAR 61 Query: 63 VG 64 Sbjct: 62 TA 63 >gi|315500767|ref|YP_004089568.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] gi|315418779|gb|ADU15417.1| histone family protein DNA-binding protein [Asticcacaulis excentricus CB 48] Length = 90 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 V ++F I ++AV G+ + + +F F V+ K +R GRNL T ++I R +VFK Sbjct: 23 IVDSVFASITEAAVLGQEVNLPAFGKFQVQAKPAREGRNLSTGATIQIAASRKLVFKPGK 82 Query: 88 ILKKRIM 94 +K R+ Sbjct: 83 PVKDRLN 89 >gi|153007189|ref|YP_001381514.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. Fw109-5] gi|152030762|gb|ABS28530.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 123 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 37/87 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ +++++ LS+ + + + + I + + + +R+G Sbjct: 29 MTQAQFFQAVAEGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARIG 88 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN T +++KI R + + LK Sbjct: 89 RNPATGEQIKIPARTAIKITPAKGLKD 115 >gi|27383423|ref|NP_774952.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110] gi|27356598|dbj|BAC53577.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110] Length = 92 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 38/90 (42%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T +++ I+K + L + + V +F I D+A + F F VK R GR Sbjct: 3 TATEIADEIAKAYNLPKAQAKAIVDGVFKSIADAAASDAETNVPGFGKFKVKHTPEREGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +KI + + F + LK + Sbjct: 63 NPSTGATIKIAAAKKLTFAPAKALKDVLNG 92 >gi|330995099|ref|ZP_08319016.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] gi|329576675|gb|EGG58178.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] Length = 90 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + +S+ G + KD++ + L E+ + I I + +F V++K RV Sbjct: 1 MNNKEFIAELSRRLGYTVKDTSSLMVALVAEMTEELEDENVIAIQNIGSFEVRKKQERVV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T Q + + P+ V+ FK S+ K+R+ Sbjct: 61 VNPATQQRMLVPPKLVINFKPSTSFKERMQ 90 >gi|195953183|ref|YP_002121473.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195932795|gb|ACG57495.1| histone family protein DNA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 99 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 45/97 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +SD++K I K S+KD + + I + ++ E I++ F +K+K S++ Sbjct: 1 MKKSDIIKQIDKYTNYSQKDIKLVIEYFLDAIMEGLIQDERIELRRLGIFLLKKKPSKMV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 N +T + + R + FK +KK + K Sbjct: 61 INPRTGVQTLVSERYLPYFKMGKYIKKELNKHQANAK 97 >gi|46200905|ref|ZP_00056166.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 84 Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ 71 K+I + G + + V + I + + F +F ++ +R GRN +T + Sbjct: 3 KAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQGRNPRTGK 62 Query: 72 EVKIDPRRVVVFKASSILKKRI 93 + I + F S+ LKK + Sbjct: 63 TIDIAASTSIKFSTSAALKKSL 84 >gi|257437801|ref|ZP_05613556.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165] gi|257199724|gb|EEU98008.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165] Length = 103 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 49/103 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + LF++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 N +T +++ + FKAS K+++ + ++ Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKLEAGRAAAQSVEETA 103 >gi|85057490|ref|YP_456406.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789595|gb|ABC65327.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 96 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K I++ S + F + + + +S E + +SS F +K + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++KI + VV FK S +K ++ D Sbjct: 61 GRNPQTGKKLKIPAKTVVSFKLSKTIKDKVKD 92 >gi|321311008|ref|YP_004193337.1| DNA-binding protein hu-alpha [Mycoplasma haemofelis str. Langford 1] gi|319802852|emb|CBY93498.1| DNA-binding protein hu-alpha [Mycoplasma haemofelis str. Langford 1] Length = 101 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + DL+ ISKE LS K + + I + + + + + F V Q+ +R G Sbjct: 2 LNKKDLLSKISKESNLSMKQVQDVLNSYQKTILEELMASKEVVVLDLGKFKVSQRSARTG 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N T + ++I + V S K + +++ Sbjct: 62 INPLTKKPIEIPAKDVPKLVPSRKFKGLVEGEVK 95 >gi|295101480|emb|CBK99025.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii L2-6] Length = 102 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 48/101 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + LF++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 N +T +++ + FKAS K+++ + + Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKLESGRAAKSVEET 101 >gi|85057510|ref|YP_456426.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789615|gb|ABC65347.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 96 Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K+I++ S + F + + + +S E + +SS F +K + + Sbjct: 1 MTKKELIKNIAEANKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++KI + +V FK S +K ++ D Sbjct: 61 GRNPQTGKKLKIPAKTIVTFKLSKTIKDKVKD 92 >gi|167763121|ref|ZP_02435248.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC 43183] gi|167699461|gb|EDS16040.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC 43183] Length = 376 Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 44/95 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +KI F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIINK 95 >gi|309808912|ref|ZP_07702790.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a] gi|308167842|gb|EFO69982.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a] Length = 47 Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + F TF V+++ +R GRN QT E++I +V FK LK+ + Sbjct: 1 MIGFGTFEVRERAARKGRNPQTGAEIEIPASKVPAFKPGKALKEAVK 47 >gi|29346321|ref|NP_809824.1| putative integration host factor IHF subunit alpha [Bacteroides thetaiotaomicron VPI-5482] gi|253568258|ref|ZP_04845669.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29338216|gb|AAO76018.1| putative integration host factor IHF alpha subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251842331|gb|EES70411.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 487 Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL+ ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFTPDTNLRDTINK 95 >gi|295104398|emb|CBL01942.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium prausnitzii SL3/3] Length = 100 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + +F++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N +T +++ + FKAS K+++ + Sbjct: 61 TNPKTKVSSQLESTSIPGFKASGRFKQKLEAGKK 94 >gi|189912884|ref|YP_001964773.1| DNA-binding protein, IHF-related [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913209|ref|YP_001964438.1| Putative DNA-binding protein (HU-like protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777560|gb|ABZ95860.1| DNA-binding protein, IHF-related [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781277|gb|ABZ99574.1| Putative DNA-binding protein (HU-like protein) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 101 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 1 MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 M+ T + +S+++ +++ G+++K+ F+ + + A I + Sbjct: 1 MATTPTPMKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKR 60 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + R GRN T + + I + VV F S K + Sbjct: 61 NRPKRKGRNPATGEAIVIPAKTVVKFTLSKTCKDAV 96 >gi|154492585|ref|ZP_02032211.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC 43184] gi|154087810|gb|EDN86855.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC 43184] Length = 94 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+ L+K +++ + + +F+ + I + GE + I F + R GR Sbjct: 3 TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 NL+T +E KI R V FKAS IL +++ Sbjct: 63 NLRTGEECKIRARTSVKFKASEILIQKLN 91 >gi|182676999|ref|YP_001831146.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636629|gb|ACB97402.1| histone family protein DNA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 114 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 41/91 (45%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 TIT + ++ L +K + + +G I+IS F VK++ SR Sbjct: 24 PTITLKQIGADLAILHDLPKKTVESLFDDMVELVGKHLKKGSKIRISGLGIFQVKKRASR 83 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 GRN T + +KI + V FK + LK+ + Sbjct: 84 QGRNPATGEAMKIKASKTVGFKIARDLKESL 114 >gi|32266292|ref|NP_860324.1| histone-like DNA-binding protein HU (HupB) [Helicobacter hepaticus ATCC 51449] gi|32262342|gb|AAP77390.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter hepaticus ATCC 51449] Length = 95 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ V + K ++KD+ + V + + I + + +++++ F F + ++ Sbjct: 1 MNKAEFVDLVKKVGEYNTKKDAEQAVNSFVDAISKALSKKQSVELVGFGKFETAIQKAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G+ TN+ + V F+ LK ++ + Sbjct: 61 GKVPGTNKTYTTKEKSVPKFRPGKGLKDQVAKAKK 95 >gi|160944593|ref|ZP_02091820.1| hypothetical protein FAEPRAM212_02106 [Faecalibacterium prausnitzii M21/2] gi|158443777|gb|EDP20781.1| hypothetical protein FAEPRAM212_02106 [Faecalibacterium prausnitzii M21/2] Length = 100 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 47/94 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + +F++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N +T +++ + FKAS K+++ + Sbjct: 61 TNPKTKVSSQLESTSIPGFKASGRFKQKLEAGKK 94 >gi|224436626|ref|ZP_03657635.1| histone-like DNA-binding protein HU (HupB) [Helicobacter cinaedi CCUG 18818] gi|313143126|ref|ZP_07805319.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313128157|gb|EFR45774.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 95 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ V+ + K ++KD+ + V + + I + + +++++ F F + ++ Sbjct: 1 MNKAEFVELVKKVGEYDTKKDAEKAVNSFVDAISQALTKKQSVELVGFGKFETAVQKAKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G+ TN+ K + V F+ LK ++ + Sbjct: 61 GKVPGTNKTYKTSEKAVPKFRPGKGLKDQVAKAKK 95 >gi|257451811|ref|ZP_05617110.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|317058367|ref|ZP_07922852.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] gi|313684043|gb|EFS20878.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R] Length = 94 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TR + K + + G+ S+ ++ R + +F I + + I F + ++ R Sbjct: 1 MTRREFAKVLF-QHGIFSSKLEADRNIEIIFQLIEKAIIEDGFFSIRHFGKIKLVERAPR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +GRN +T +E+ ID R+ + F+ S L +R+ ++ Sbjct: 60 MGRNPKTGEEINIDARKSIKFRPSRFLLERLWEE 93 >gi|293363573|ref|ZP_06610329.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2] gi|292552922|gb|EFF41676.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2] Length = 92 Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V I+ + G + K+ +F + + + E +++S+ TF + K R Sbjct: 1 MTKKEFVMKIANKTGYTVKEVNKFFDAFVFYLKEELIGEEKVQLSTLGTFSTQIKRKRET 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N T + + I RRVV F+ S L++ + Sbjct: 61 KNAFTGENISIPERRVVRFRPSKYLREIV 89 >gi|326381558|ref|ZP_08203252.1| histone family protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326199805|gb|EGD56985.1| histone family protein DNA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 239 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 50/94 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ ++K RK +T FV + + I + +GE++ I+ F F +++ +RV Sbjct: 1 MNKAELIEELTKRLDADRKTATNFVEQVIDTIVRAVNKGESVTITGFGVFEKRRRAARVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN +T + VK+ + F+ + K + + Sbjct: 61 RNPRTGETVKVKATSIPAFRPGAQFKAIVSGKQK 94 >gi|213609081|ref|ZP_03368907.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 54 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 44 EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 E I+I F +F + + R GRN +T +V+++ + V FK L+ R Sbjct: 1 ERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 51 >gi|255603677|ref|XP_002538095.1| DNA-binding protein HU, putative [Ricinus communis] gi|223513840|gb|EEF24287.1| DNA-binding protein HU, putative [Ricinus communis] Length = 101 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R LV+ I+ + GL++ + + T+ I + + ++I F TF + + +R G Sbjct: 1 MNRVQLVEIIADKHGLTKVVAAEILDTITQTITTTVKKNGVVQILGFGTFKQQVRVARTG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 N +++K+ +V F + K + RK Sbjct: 61 YNPVEGKKIKLPATKVPKFVPGTKFKAAVDPKAAKRKAA 99 >gi|322433108|ref|YP_004210357.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|322433120|ref|YP_004210369.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165335|gb|ADW71039.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165347|gb|ADW71051.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 125 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 43/93 (46%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SKT+T++ LV +S++ LS+K + F L + I Q+ + Sbjct: 30 SKTMTKAALVLLVSEKMELSKKQTAEFFDLLAATAIQETKKNGEFTIPGLGKLVKAQRAA 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+GRN QT + +KI + V F+ + K I Sbjct: 90 RLGRNPQTGETIKIKAKTAVKFRVAKAAKDLIA 122 >gi|329954834|ref|ZP_08295851.1| LysM domain protein [Bacteroides clarus YIT 12056] gi|328526938|gb|EGF53949.1| LysM domain protein [Bacteroides clarus YIT 12056] Length = 412 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 44/95 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +KI F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDIINK 95 >gi|212693202|ref|ZP_03301330.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855] gi|212664307|gb|EEB24879.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855] Length = 439 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 49/95 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >gi|255263938|ref|ZP_05343280.1| DNA-binding protein HU [Thalassiobium sp. R2A62] gi|255106273|gb|EET48947.1| DNA-binding protein HU [Thalassiobium sp. R2A62] Length = 95 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M K +T++ LV ++++E G +K + + + N I G A+ + + +++ Sbjct: 1 MVKPMTKTQLVAALAEEMGADKKAAGAALDAVCNLITTEVSGGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D +VV + LK + Sbjct: 61 ERMVRNPATGEQIKKDADKVVKMTIAKALKDSVNG 95 >gi|148260981|ref|YP_001235108.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|326404379|ref|YP_004284461.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] gi|146402662|gb|ABQ31189.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|325051241|dbj|BAJ81579.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] Length = 89 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 44/89 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + I ++ + R T L I + + SF TF V++ +R G Sbjct: 1 MSKAFIAEVIQGSAEITGVAANRAATDLMEAIVKELKKNGKFTLPSFGTFTVRKTKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +E+K+ + V FKAS LKK + Sbjct: 61 VNPRTGEEIKVKAGKTVRFKASPSLKKMV 89 >gi|258648339|ref|ZP_05735808.1| putative integration host factor IHF alpha subunit [Prevotella tannerae ATCC 51259] gi|260851504|gb|EEX71373.1| putative integration host factor IHF alpha subunit [Prevotella tannerae ATCC 51259] Length = 423 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 5 ITRS----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + R ++ + ++ +S+K + F F+ I + +KI F TF V Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + ++ID + F S LK I Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLINK 95 >gi|303257412|ref|ZP_07343425.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|331001348|ref|ZP_08324972.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] gi|302859769|gb|EFL82847.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47] gi|329568607|gb|EGG50409.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis YIT 11859] Length = 94 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L++ I++E +++ +TR + T+ I S GE + + F TF ++ +RV Sbjct: 1 MNKQQLIEIIAEENEITKDMATRTLNTMIRSIMTSVKNGEPVVLVGFGTFRQVKRKARVI 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T +++++ PR V F ++ K+ + + Sbjct: 61 CNPHTGEKLELKPRSVPKFVPGTLFKQIVDE 91 >gi|265753596|ref|ZP_06088951.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235310|gb|EEZ20834.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 474 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 49/95 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >gi|237709944|ref|ZP_04540425.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237725390|ref|ZP_04555871.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436077|gb|EEO46154.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456037|gb|EEO61758.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 474 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 49/95 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >gi|317476992|ref|ZP_07936234.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|316906785|gb|EFV28497.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 389 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +K+ F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLINK 95 >gi|294776170|ref|ZP_06741659.1| DNA-binding protein HU [Bacteroides vulgatus PC510] gi|294449993|gb|EFG18504.1| DNA-binding protein HU [Bacteroides vulgatus PC510] Length = 476 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 50/95 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ V + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >gi|288819045|ref|YP_003433393.1| integration host factor beta subunit [Hydrogenobacter thermophilus TK-6] gi|288788445|dbj|BAI70192.1| integration host factor beta subunit [Hydrogenobacter thermophilus TK-6] gi|308752628|gb|ADO46111.1| histone family protein DNA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 98 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 50/95 (52%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + +S++ ISKE+ + + + V +F+ I ++I F F ++++G R Sbjct: 4 KKVKKSEIASKISKEYQIPLELAKSLVEGVFSWIVQKTAEDGRVEIRGFGVFKLRRRGGR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 +N +T E+ ++ R ++ FK S L KR+ + + Sbjct: 64 FTKNPKTGIEMYVEERYLMSFKPSKKLLKRLNEKV 98 >gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] gi|299793137|gb|ADJ43512.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] Length = 225 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++++S+ G +K + + V L + I + +GE + I+ F F + + +R R Sbjct: 3 NKAQLIEALSERLGDDKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 62 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 N +T + VK+ V F+A + K I + K Sbjct: 63 NPRTGEAVKVKKTNVPAFRAGTTFKDVISGTKKLPKATP 101 >gi|258543687|ref|YP_003189120.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|329113852|ref|ZP_08242623.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001] gi|256634765|dbj|BAI00741.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01] gi|256637821|dbj|BAI03790.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-03] gi|256640875|dbj|BAI06837.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-07] gi|256643930|dbj|BAI09885.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-22] gi|256646985|dbj|BAI12933.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-26] gi|256650038|dbj|BAI15979.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-32] gi|256653028|dbj|BAI18962.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656082|dbj|BAI22009.1| histone-like bacterial DNA-binding protein HU [Acetobacter pasteurianus IFO 3283-12] gi|326696862|gb|EGE48532.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001] Length = 89 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + I + + + L + I + R + SF TF V++ +R Sbjct: 1 MSKAFIAAVIQDSINCTGVAANQAANDLIDAIVEELKREGGFTLPSFGTFTVRKTKARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T ++VK+ + V FKAS LKK + Sbjct: 61 LNPRTGEQVKVKAGKTVRFKASPNLKKAV 89 >gi|254882027|ref|ZP_05254737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319640965|ref|ZP_07995673.1| integration host factor IHF alpha subunit [Bacteroides sp. 3_1_40A] gi|254834820|gb|EET15129.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387410|gb|EFV68281.1| integration host factor IHF alpha subunit [Bacteroides sp. 3_1_40A] Length = 476 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 50/95 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ V + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >gi|167948154|ref|ZP_02535228.1| integration host factor, alpha subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 104 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQKGSR 62 ++T++D+ + + E GL+++++ V F EI + G +K+S F F +K R Sbjct: 2 SLTKADMAERLFDELGLNKREAKEMVEMFFEEIRRALEEGSQVKLSGFGNFDPGVEKKQR 61 Query: 63 VGRNLQ--TNQEVK---IDPRRVVVFKASSILKKRIM 94 + T + K P +V F+ LK R+ Sbjct: 62 ----PRSYTQKPEKRSRSPPAELVTFRPGQTLKARVE 94 >gi|237710577|ref|ZP_04541058.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] gi|237720884|ref|ZP_04551365.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|229449719|gb|EEO55510.1| DNA-binding protein HU [Bacteroides sp. 2_2_4] gi|229455299|gb|EEO61020.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA] Length = 92 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 37/88 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+K +++ G++ + + E D+ G + I F T K +V Sbjct: 1 MRKEELIKQVAESTGIAICEVRTVIEAALKETVDAVANGRTLYIRGFGTLSPKHYKRKVA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 RN+ N+ + I FK + K R Sbjct: 61 RNIHKNETIVIAEHYTPHFKPAKSFKNR 88 >gi|299135887|ref|ZP_07029071.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] gi|298602011|gb|EFI58165.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX8] Length = 98 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K IT++ LV+ ++++ L+ K + F+ L + I ++ Sbjct: 1 MAKGITKTQLVRLLAEKLELTNKQTAAFLELLAETAVKETKKNGEFTIPGIGKLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +RVGRN QT + +KI + VV F+ + + K I Sbjct: 61 ARVGRNPQTGEAIKIKAKTVVKFRVAKVAKDTIA 94 >gi|114327347|ref|YP_744504.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] gi|114315521|gb|ABI61581.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1] Length = 100 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + I L+ + R L I + + SF TF V++ +R G Sbjct: 12 MSKAFIAQVIQDSAELTGVAANRTANDLITAIVKEMKKNGKFTLPSFGTFTVRKTKARKG 71 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T +++K+ + V FKAS LKK + Sbjct: 72 LNPRTGEQIKVKAGKTVRFKASPNLKKSV 100 >gi|150005791|ref|YP_001300535.1| putative integration host factor IHF alpha subunit [Bacteroides vulgatus ATCC 8482] gi|149934215|gb|ABR40913.1| putative integration host factor IHF alpha subunit [Bacteroides vulgatus ATCC 8482] Length = 476 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 50/95 (52%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ +T D+++ ++++ +++KD+ FV +F I ++ V + +K+ TF + + Sbjct: 1 MSEKVTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + ++I + F S +K I Sbjct: 61 SRESVNVNTGERIEIQGHTKISFTPDSSMKDLINK 95 >gi|313114932|ref|ZP_07800429.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255] gi|310622754|gb|EFQ06212.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255] Length = 101 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 47/96 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS ++++++++ G + + +F++I D E + I+ F F ++ + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 N +T +++ + FKAS K+++ + Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKLEAGKAAK 96 >gi|218131130|ref|ZP_03459934.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM 20697] gi|217986650|gb|EEC52984.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM 20697] Length = 397 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 44/95 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + DL+ ++++ G+S+K++ FV F I ++ + + +K+ F + Sbjct: 1 MNEKLNIQDLIDLLAEKHGMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F LK I Sbjct: 61 SRESVNVNTGERFEIQGHTKVSFTPEPALKDLINK 95 >gi|332827119|gb|EGJ99904.1| hypothetical protein HMPREF9455_03777 [Dysgonomonas gadei ATCC BAA-286] Length = 420 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 48/95 (50%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ ++ DL+ ++K+ G+++K++ F+ L I S ++++I F F + + Sbjct: 1 MNERLSLQDLIDLLAKKQGIAKKEAETFLRELIAVISVSIESNDSVRIKDFGVFKLVKVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R ++ T + ++I + F LK+ I Sbjct: 61 ARKSVDVNTGEAIEIPAHYKLSFTPDKSLKEAINK 95 >gi|197294495|ref|YP_001799036.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853822|emb|CAM11766.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] Length = 96 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63 +T+ +L+K+++ S + F + N + ++ E + IS F +K + + Sbjct: 1 MTKKELIKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++KI + VV FK S LK + + Sbjct: 61 GRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKN 92 >gi|320109312|ref|YP_004184902.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] gi|319927833|gb|ADV84908.1| histone family protein DNA-binding protein [Terriglobus saanensis SP1PR4] Length = 98 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K IT++ LV++++++ L+ K S F + + I ++ Sbjct: 1 MAKGITKTALVRTLAEKLELTNKQSAAFFEAIAEIAVKETKKNGEFTIPGIGKLVKAERK 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +R+GRN QT + +KI + VV F+ + K I Sbjct: 61 ARLGRNPQTGETIKIKAKTVVKFRVAKAAKDAIA 94 >gi|319789020|ref|YP_004150653.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] gi|317113522|gb|ADU96012.1| histone family protein DNA-binding protein [Thermovibrio ammonificans HB-1] Length = 97 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 5 ITRSDLVK----SISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T+ +LV +S++ G + ++ V L + I GE +KI F F++K+ Sbjct: 1 MTKYELVNELRQRVSRKLGKQVRKELIETTVEELLDLIVFKVFGGEEVKIRGFGKFYLKE 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R RN +T + V + PR+V FK S ++ Sbjct: 61 ASPRRARNPKTGEVVNVPPRKVFAFKPSKDIR 92 >gi|307721611|ref|YP_003892751.1| histone family protein DNA-binding protein [Sulfurimonas autotrophica DSM 16294] gi|306979704|gb|ADN09739.1| histone family protein DNA-binding protein [Sulfurimonas autotrophica DSM 16294] Length = 94 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++ V+ + + ++ ++ + + ++ V+GE + + F +F + + Sbjct: 1 MNKAQFVELVQEHGNYKTKVEAENAIKAFTEAVIEALVKGEDVSLVGFGSFAAALQKGKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+ T++ + V FKA LK R+ Sbjct: 61 GKVPGTDKTYTTQDKMVPKFKAGKGLKDRVA 91 >gi|197294327|ref|YP_001798868.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|197294355|ref|YP_001798896.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|197294406|ref|YP_001798947.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|197294488|ref|YP_001799029.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|197294819|ref|YP_001799360.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853654|emb|CAM11533.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853682|emb|CAM11565.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853733|emb|CAM11656.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853815|emb|CAM11756.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171854146|emb|CAM12138.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] Length = 96 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63 +T+ +L+K+I+ S + F + N + ++ E + IS F +K + + Sbjct: 1 MTKKELIKNIAVMNNTSVTQTQDFYNSFENALIEAITSNEEVIISPKIGKFILKSRKAHK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++KI + VV FK S LK + + Sbjct: 61 GRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKN 92 >gi|85057657|ref|YP_456573.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789762|gb|ABC65494.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 96 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K+I++ S + F + + + +S E + +SS F +K + + Sbjct: 1 MTKKELIKNIAEVNKTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 GRN QT +++KI + VV FK S +K ++ D Sbjct: 61 GRNPQTGKKLKISAKTVVSFKLSKTIKDKVKD 92 >gi|134102579|ref|YP_001108240.1| histone-like DNA binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291004735|ref|ZP_06562708.1| histone-like DNA binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133915202|emb|CAM05315.1| histone-like DNA binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ L++++++ G +K +++ V + + I +GE + I+ F F + + +R Sbjct: 1 MNKAQLIEALAERLG-DKKTASKAVEDVVDIIVRQVNKGEKVNITGFGVFEKRARAARTA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + VK+ V F+A + K+ I Sbjct: 60 RNPRTGEAVKVKKTNVPAFRAGTQFKEVI 88 >gi|226943962|ref|YP_002799035.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ] gi|226718889|gb|ACO78060.1| histone-like bacterial DNA-binding protein [Azotobacter vinelandii DJ] Length = 55 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 40 AVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G + + F F VK++ +R GRN T QE++I RV FKA LK+ + Sbjct: 1 MKAGREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAVN 55 >gi|254434179|ref|ZP_05047687.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] gi|207090512|gb|EDZ67783.1| DNA-binding protein HU [Nitrosococcus oceani AFC27] Length = 119 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +L I+K+ G++ + +I G+ +++S F F+ K +R RN Sbjct: 33 KELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNP 92 Query: 68 QTNQEVKIDPRRVVVFKA 85 +T + +++ PR + FKA Sbjct: 93 RTGEAIQVPPRSYLRFKA 110 >gi|86160619|ref|YP_467404.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|197124716|ref|YP_002136667.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|220919437|ref|YP_002494741.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|85777130|gb|ABC83967.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|196174565|gb|ACG75538.1| histone family protein DNA-binding protein [Anaeromyxobacter sp. K] gi|219957291|gb|ACL67675.1| histone family protein DNA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 95 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 35/87 (40%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++ +++++ +S+ + + I + + + +R+G Sbjct: 1 MTQAQFFQAVAEGSQVSKAQVRAVFEAVEEVVTKRLKAEGKIPLGGLGAVKLVDRKARIG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKK 91 RN T +++KI R + + LK Sbjct: 61 RNPATGEQIKIPARTAIKLTPAKALKD 87 >gi|260592454|ref|ZP_05857912.1| putative integration host factor IHF alpha subunit [Prevotella veroralis F0319] gi|260535500|gb|EEX18117.1| putative integration host factor IHF alpha subunit [Prevotella veroralis F0319] Length = 376 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+KT+ + + +++K++ LS D FV T F I D +G +KI TF V++ Sbjct: 1 MAKTVIQI-IASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVK 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I+ V F + +K+ + Sbjct: 60 PRESVNVNTGERVLIEGHDKVSFTPDAAMKELVNK 94 >gi|313678363|ref|YP_004056103.1| DNA-binding protein HU [Mycoplasma bovis PG45] gi|312950746|gb|ADR25341.1| DNA-binding protein HU [Mycoplasma bovis PG45] Length = 91 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + +K+I+ + +S K + +F + + + +++SS F + + R Sbjct: 1 MTKKEFIKAIANKMEVSVKKADQFFDAFVFVLKEELIAENKVQLSSLGIFETRIRRGRDT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T E+ + +RV+ F S L++ + Sbjct: 61 INPFTMNELSVPEKRVIKFTPSKYLRELVN 90 >gi|294056334|ref|YP_003549992.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293615667|gb|ADE55822.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 91 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++LV + K G ++ + R V + + + + +++ F TF V ++ +R Sbjct: 1 MNKAELVAEVQKSLGKDTTKAAAERAVEAVLEGVKKGVKKDKNVQLIGFGTFSVTKRAAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 G N QT +++KI + V FKA + LK Sbjct: 61 EGINPQTGEKIKIKASKAVKFKAGAGLKA 89 >gi|189465619|ref|ZP_03014404.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM 17393] gi|189437893|gb|EDV06878.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM 17393] Length = 433 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ + +L++ ++++ G+ + D+ FV F I +S + +KI TF + Sbjct: 1 MNEKLNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F LK I Sbjct: 61 SRESVNINTGERFEIQGHTKVSFTPEPTLKDLINK 95 >gi|288803467|ref|ZP_06408899.1| DNA-binding protein HU-beta [Prevotella melaninogenica D18] gi|288334077|gb|EFC72520.1| DNA-binding protein HU-beta [Prevotella melaninogenica D18] Length = 91 Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 32/64 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + + + I ++ G+ +++ F TF ++ + G Sbjct: 1 MNKTELIEKIAANAEVSKAVAKKALDATTEAIKEALAAGDKVQLVGFGTFATTERPAHEG 60 Query: 65 RNLQ 68 N + Sbjct: 61 INPR 64 >gi|292490832|ref|YP_003526271.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291579427|gb|ADE13884.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 109 Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +L I+K+ G++ + ++ G+ +++S F F+ K +R RN Sbjct: 23 KELAGRIAKQTGMTPDQVEEILAAFKKQVIADLTSGQEVRLSHFGKFYAKHMDAREARNP 82 Query: 68 QTNQEVKIDPRRVVVFKA 85 +T + +++ PR + F+A Sbjct: 83 RTGEIIQVPPRSYLRFRA 100 >gi|299145604|ref|ZP_07038672.1| putative integration host factor IHF alpha subunit [Bacteroides sp. 3_1_23] gi|298516095|gb|EFI39976.1| putative integration host factor IHF alpha subunit [Bacteroides sp. 3_1_23] Length = 471 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|293373986|ref|ZP_06620327.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] gi|292631062|gb|EFF49699.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f] Length = 471 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|77165933|ref|YP_344458.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] gi|76884247|gb|ABA58928.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707] Length = 109 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 38/78 (48%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +L I+K+ G++ + +I G+ +++S F F+ K +R RN Sbjct: 23 KELAGRIAKQTGMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARNP 82 Query: 68 QTNQEVKIDPRRVVVFKA 85 +T + +++ PR + FKA Sbjct: 83 RTGEAIQVPPRSYLRFKA 100 >gi|317014245|gb|ADU81681.1| DNA-binding protein HU [Helicobacter pylori Gambia94/24] Length = 96 Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ + + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G+ +++ K + +RV FK ILK+++ + R Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEGKR 95 >gi|148259522|ref|YP_001233649.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|326402729|ref|YP_004282810.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] gi|146401203|gb|ABQ29730.1| histone family protein DNA-binding protein [Acidiphilium cryptum JF-5] gi|325049590|dbj|BAJ79928.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301] Length = 89 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 43/89 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + I G++ + R T + I + + SF TF V++ +R G Sbjct: 1 MSKAFITDVIQNSTGITGVAANRAATDVIEAIVKELKKKGKFTLPSFGTFTVRKTKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N ++ + +K+ + V FK+S LK R+ Sbjct: 61 VNPRSGEPIKVKAGKTVRFKSSPTLKTRV 89 >gi|237716501|ref|ZP_04546982.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408099|ref|ZP_06084647.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645093|ref|ZP_06722819.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] gi|229444148|gb|EEO49939.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354907|gb|EEZ03999.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639599|gb|EFF57891.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a] Length = 472 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|307637527|gb|ADN79977.1| DNA-binding protein [Helicobacter pylori 908] gi|325996116|gb|ADZ51521.1| DNA-binding protein [Helicobacter pylori 2018] gi|325997712|gb|ADZ49920.1| DNA-binding protein HU [Helicobacter pylori 2017] Length = 94 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ + + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEES 93 >gi|298484175|ref|ZP_07002341.1| integration host factor IHF alpha subunit [Bacteroides sp. D22] gi|298269679|gb|EFI11274.1| integration host factor IHF alpha subunit [Bacteroides sp. D22] Length = 472 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|294809493|ref|ZP_06768196.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] gi|294443311|gb|EFG12075.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b] Length = 144 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|317180599|dbj|BAJ58385.1| dna-binding protein hu [Helicobacter pylori F32] Length = 94 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + RGE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFILAVETALSRGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|68077087|ref|XP_680463.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56501398|emb|CAH98113.1| conserved hypothetical protein [Plasmodium berghei] Length = 187 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 51/100 (51%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ +T+ +++ +S E S+K + + +F+ I E I I F ++ + Sbjct: 54 SQAVTKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKK 113 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R +N++T ++++I+ V FK S I K I +++ +K Sbjct: 114 RYIKNMRTKEDIEIESSHVPHFKFSKIFKDMIKVNIKAKK 153 >gi|291461216|ref|ZP_06027675.2| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] gi|291378149|gb|EFE85667.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693] Length = 107 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +K+ L KDS R V + D+ ++GE ++ F ++ V+++ +R Sbjct: 6 MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEDALLKGEGVRFIGFGSWEVRERAAREV 65 Query: 65 RNLQT 69 N QT Sbjct: 66 TNPQT 70 >gi|15893011|ref|NP_360725.1| integration host factor alpha-subunit [Rickettsia conorii str. Malish 7] gi|34581296|ref|ZP_00142776.1| integration host factor alpha-subunit [Rickettsia sibirica 246] gi|229587067|ref|YP_002845568.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5] gi|81527945|sp|Q92GN5|HLP_RICCN RecName: Full=Histone-like DNA-binding protein gi|15620211|gb|AAL03626.1| integration host factor alpha-subunit [Rickettsia conorii str. Malish 7] gi|28262681|gb|EAA26185.1| integration host factor alpha-subunit [Rickettsia sibirica 246] gi|228022117|gb|ACP53825.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5] Length = 95 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + + + + + +F +F VKQK R Sbjct: 2 TITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95 >gi|16081263|ref|NP_393571.1| DNA-binding protein HTa [Thermoplasma acidophilum DSM 1728] gi|11467945|sp|P02345|DBH_THEAC RecName: Full=DNA-binding protein HTa gi|10639239|emb|CAC11241.1| DNA-binding protein HTa [Thermoplasma acidophilum] Length = 90 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 47/83 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K ++K+ ++K + + + +EI A G+ I ++ F F + +G R RN Sbjct: 5 SELSKEVAKKANTTQKVARTVIKSFLDEIVSQANGGQKINLAGFGIFERRTQGPRKARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT + +++ ++ VF+ASS +K Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87 >gi|317178804|dbj|BAJ56592.1| dna-binding protein hu [Helicobacter pylori F30] Length = 94 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|160882774|ref|ZP_02063777.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483] gi|156111798|gb|EDO13543.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483] Length = 471 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|325300753|ref|YP_004260669.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324320306|gb|ADY38196.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 92 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I ++DL+K ++++ K+ + F E+ + R + + I F TF + + Sbjct: 3 INKTDLIKIVAEKANQPTKEVAEIIDLFFKELSQNL-RDKDVSIKDFGTFKKRIVPPKKA 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASS 87 RN T + + + + V F+ S Sbjct: 62 RNPATGETIYVPEKEAVKFRPSK 84 >gi|167950934|ref|ZP_02538008.1| histone family protein DNA-binding protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 63 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 32 LFNEICDSAVRGEAIKISS-----FATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 + I ++ G+ ++ F +++ +R GRN QT + ++I + FKA Sbjct: 1 MVEAITEALKSGDQ-GLAGWLWDLFG----QERAARQGRNPQTGETIQIAASKTPSFKAG 55 Query: 87 SILKKRIM 94 LK + Sbjct: 56 KALKDAVN 63 >gi|260170243|ref|ZP_05756655.1| putative integration host factor IHF alpha subunit [Bacteroides sp. D2] gi|315918606|ref|ZP_07914846.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692481|gb|EFS29316.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 470 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|237720680|ref|ZP_04551161.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449515|gb|EEO55306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 470 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|153806287|ref|ZP_01958955.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185] gi|149130964|gb|EDM22170.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185] Length = 435 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 42/95 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DL ++ + +++KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR N+ T + +I V F + L+ I Sbjct: 61 SRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 95 >gi|300776330|ref|ZP_07086188.1| DNA-binding protein HU [Chryseobacterium gleum ATCC 35910] gi|300501840|gb|EFK32980.1| DNA-binding protein HU [Chryseobacterium gleum ATCC 35910] Length = 96 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRV 63 + +S+L+ +I+K+ G+++ + + + + + + + + + F TF V ++ +R Sbjct: 1 MNKSELIDAIAKDAGITKVAAKAALESFIGNVTTTLKKKDGKVSLVGFGTFSVAERAARQ 60 Query: 64 GRNLQT 69 G N T Sbjct: 61 GINPAT 66 >gi|315586499|gb|ADU40880.1| DNA-binding protein HU [Helicobacter pylori 35A] Length = 94 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFILAVETALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|109947731|ref|YP_664959.1| histon like DNA-binding protein HU [Helicobacter acinonychis str. Sheeba] gi|109714952|emb|CAJ99960.1| histon like DNA-binding protein HU [Helicobacter acinonychis str. Sheeba] Length = 94 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ + + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEVGEFNSKREAEEVINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ + + K +RV FKA ILK+++ Sbjct: 61 GKVPGSGKTYKTKDKRVPKFKAGKILKQKVEKG 93 >gi|188527318|ref|YP_001910005.1| dna-binding protein hu [Helicobacter pylori Shi470] gi|30060258|gb|AAP13078.1| DNA-binding protein HU [Helicobacter pylori NCTC 11637] gi|188143558|gb|ACD47975.1| dna-binding protein hu [Helicobacter pylori Shi470] gi|308062156|gb|ADO04044.1| DNA-binding protein HU [Helicobacter pylori Cuz20] Length = 94 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ + + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|332673359|gb|AEE70176.1| DNA-binding protein HU [Helicobacter pylori 83] Length = 94 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ +T + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|134034140|sp|Q1RK52|HLP_RICBR RecName: Full=Histone-like DNA-binding protein Length = 94 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + ++ E G S+ V +F I D + + + + +F +F VK K SR Sbjct: 2 TITKEKIAFMLNAELGFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G N T ++ I+P+ ++ F S+ LK I ++ Sbjct: 61 GINFHTKSQITIEPKNILRFVPSAKLKALINEN 93 >gi|315644375|ref|ZP_07897515.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] gi|315280252|gb|EFU43544.1| histone family protein DNA-binding protein [Paenibacillus vortex V453] Length = 61 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + ++DL+ +IS + GL++KD + EI D+ G+ +++ F TF Sbjct: 1 MNKTDLINNISGKSGLTKKDVENVLNGFLGEITDALANGDKVQLIGFGTF 50 >gi|294155859|ref|YP_003560243.1| DNA-binding protein HU [Mycoplasma crocodyli MP145] gi|291600263|gb|ADE19759.1| DNA-binding protein HU [Mycoplasma crocodyli MP145] Length = 93 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 45/89 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + + I+ G + K+ +F T + + + E +++SS TF + K R Sbjct: 1 MTKKEFIMKIANRTGYTVKEVNKFFDTFVFFLKEELIGEEKVQLSSLGTFSTQIKHKRHT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N T +++ I +RVV F S L++ I Sbjct: 61 KNAFTGEDLFIPEKRVVKFTPSKYLRELI 89 >gi|317182148|dbj|BAJ59932.1| dna-binding protein hu [Helicobacter pylori F57] Length = 94 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFINLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|238650372|ref|YP_002916224.1| integration host factor alpha-subunit [Rickettsia peacockii str. Rustic] gi|238624470|gb|ACR47176.1| integration host factor alpha-subunit [Rickettsia peacockii str. Rustic] Length = 95 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + + + + + +F +F VKQK R Sbjct: 2 TITKAKIAAMLSSKLGFSNNLCEAIVHTVFSNILE-IAKAQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINESTR 95 >gi|224024934|ref|ZP_03643300.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM 18228] gi|224018170|gb|EEF76168.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM 18228] Length = 95 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +S+ G + KD+ V +L + + + F TF VK+K R+ Sbjct: 1 MNSKEFTGELSRRLGYTNKDAAVLVASLVDIMAQELQESNVLTFQEFGTFEVKKKMERIV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T Q + + P+ + FK LK ++ ++ Sbjct: 61 VNPVTRQRLLVPPKLSLTFKPCPALKGKVKNE 92 >gi|13540991|ref|NP_110679.1| nucleoid DNA-binding protein (HB-related) [Thermoplasma volcanium GSS1] gi|14324375|dbj|BAB59303.1| DNA-binding protein HU [Thermoplasma volcanium GSS1] Length = 90 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 47/83 (56%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K ++K+ ++K + + + +EI A G+ I ++ F F + +G R RN Sbjct: 5 SELSKDVAKKANTTQKVARTVIKSFLDEIVAQANGGQKINLAGFGIFERRTQGPRKARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT + +++ ++ VF+ASS +K Sbjct: 65 QTKKVIEVPSKKKFVFRASSKIK 87 >gi|91792857|ref|YP_562508.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] gi|91714859|gb|ABE54785.1| histone-like DNA-binding protein [Shewanella denitrificans OS217] Length = 94 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L+ S+S++ S++ + + + I + + GE + + F TF + + ++ Sbjct: 1 MNKQQLIASMSRQLQQSQRQTKMELEQVLASIKQALIEGEKVFLPQFGTFELSYRLPQIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R+ QT ++++ + V K S LK + Sbjct: 61 RHPQTGASIEVEGQNVPRIKFSPNLKAALN 90 >gi|48477447|ref|YP_023153.1| DNA-binding protein [Picrophilus torridus DSM 9790] gi|48430095|gb|AAT42960.1| DNA-binding protein [Picrophilus torridus DSM 9790] Length = 90 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 45/83 (54%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K+++K+ ++K + + E+ A G+ I ++ F F K + R RN Sbjct: 5 SELSKTVAKKTDTTQKKARDVIREFLAEVVSQADSGQKINLAGFGIFERKTQSPRTARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 QT E+K+ ++ VF+ASS +K Sbjct: 65 QTRAEIKVPAKKKFVFRASSKIK 87 >gi|317011056|gb|ADU84803.1| DNA-binding protein HU [Helicobacter pylori SouthAfrica7] Length = 94 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ + + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETVEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FKA ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKAGKILKQKVEEG 93 >gi|88596497|ref|ZP_01099734.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25] gi|88191338|gb|EAQ95310.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25] Length = 61 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 35/61 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D + +++ GL++KD+T + + I D +G++I F TF +++ +R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 65 R 65 R Sbjct: 61 R 61 >gi|15611841|ref|NP_223492.1| DNA-binding protein HU [Helicobacter pylori J99] gi|9789720|sp|Q9ZL08|DBH_HELPJ RecName: Full=DNA-binding protein HU gi|4155341|gb|AAD06354.1| DNA-BINDING PROTEIN HU [Helicobacter pylori J99] Length = 94 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFGL--SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++ + + K+ G S++++ + + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLV-KKAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGK 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 60 EGKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|50365485|ref|YP_053910.1| histone-like DNA-binding protein [Mesoplasma florum L1] gi|50364041|gb|AAT76026.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1] Length = 441 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 7 RSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + DL+ + + S+K V + F + ++ + E + IS+F K ++ G Sbjct: 337 KKDLLIKLEETHSEFSKKSVKEVVDSAFEIMSNAIINNEEVLISNFGKLTKIHKEAKKGI 396 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKK 91 N T + + I V FKA+ LK+ Sbjct: 397 NPSTGETIDIPASNTVKFKANKHLKE 422 >gi|282858820|ref|ZP_06267965.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] gi|282588389|gb|EFB93549.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010] Length = 443 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 42/86 (48%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L +I+K++ LS D+T+FV +F+ + + +KI TF V+ R N+ T Sbjct: 9 LAIAIAKKYKLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVNT 68 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 + V I+ + F + +K+ + Sbjct: 69 GERVLIEGHDKISFTPDATMKELVNK 94 >gi|208434749|ref|YP_002266415.1| DNA-binding protein HU [Helicobacter pylori G27] gi|208432678|gb|ACI27549.1| DNA-binding protein HU [Helicobacter pylori G27] gi|261839347|gb|ACX99112.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori 52] Length = 94 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|157964859|ref|YP_001499683.1| integration host factor alpha-subunit [Rickettsia massiliae MTU5] gi|157844635|gb|ABV85136.1| Integration host factor alpha-subunit [Rickettsia massiliae MTU5] Length = 119 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F+ I + + + + + +F +F VKQ+ R Sbjct: 26 TITKKKIAAMLSSKLGFSNSLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQQNPRP 84 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 85 GINFYTKAPVIIESKKHLRFVPSSKLKALINESTR 119 >gi|294782111|ref|ZP_06747437.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] gi|294480752|gb|EFG28527.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA] Length = 102 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +K+ L KDS R V + ++ ++GE ++ F ++ VK++ +R Sbjct: 1 MTKKEFVDAFAKKAELKLKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60 Query: 65 RNLQT 69 N QT Sbjct: 61 TNPQT 65 >gi|160872801|ref|ZP_02062933.1| integration host factor, beta subunit [Rickettsiella grylli] gi|159121600|gb|EDP46938.1| integration host factor, beta subunit [Rickettsiella grylli] Length = 100 Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L+ + +F L + V L + + +G I+I F +F + +R Sbjct: 1 MLKSELINQLILKFPQLQASTVKKSVEHLIQLLEQTLHQGHRIEIRGFGSFSLHYNAARS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILK 90 N +T + + + FK LK Sbjct: 61 AFNPKTKEHFLAPEKYRIHFKMGKTLK 87 >gi|217032526|ref|ZP_03438017.1| hypothetical protein HPB128_180g25 [Helicobacter pylori B128] gi|298736540|ref|YP_003729066.1| DNA-binding protein HU-beta [Helicobacter pylori B8] gi|216945804|gb|EEC24427.1| hypothetical protein HPB128_180g25 [Helicobacter pylori B128] gi|298355730|emb|CBI66602.1| DNA-binding protein HU-beta [Helicobacter pylori B8] Length = 94 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|261837934|gb|ACX97700.1| histone-like DNA-binding protein HU [Helicobacter pylori 51] gi|317177333|dbj|BAJ55122.1| dna-binding protein hu [Helicobacter pylori F16] Length = 94 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ +T + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|189501612|ref|YP_001957329.1| histone family DNA-binding protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497053|gb|ACE05600.1| histone family protein DNA-binding protein [Candidatus Amoebophilus asiaticus 5a2] Length = 95 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 45/95 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++++V I+ + G+++ D V + F + + V G+++ F F K++ ++ Sbjct: 1 MNKAEVVTEIATKTGINKSDVQVVVESFFQVVQQAMVDGKSVHFKGFGKFFNKKRSKKIA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 RNL N + ID V K S ++ ++ Sbjct: 61 RNLTDNTAMVIDEHYVPTLKISKDFVNKVKGVVKA 95 >gi|108563246|ref|YP_627562.1| DNA-binding protein HU [Helicobacter pylori HPAG1] gi|107837019|gb|ABF84888.1| DNA-binding protein HU [Helicobacter pylori HPAG1] Length = 94 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S ++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYSSKREAEEAISAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|291320508|ref|YP_003515772.1| DNA binding histone like protein HU [Mycoplasma agalactiae] gi|268326522|emb|CAL59247.1| DNA binding histone like protein HU [Mycoplasma agalactiae PG2] gi|290752843|emb|CBH40818.1| DNA binding histone like protein HU [Mycoplasma agalactiae] Length = 91 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + VK+I+ + +S K + +F + + + +++SS F K + R Sbjct: 1 MTKKEFVKAIANKMEVSVKRADQFFDAFVFVLKEELIAESKVQLSSLGIFETKIRRGRDT 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T E+ + +RV+ F S L++ + Sbjct: 61 INPFTMSELSVPEKRVIKFTPSKYLRELVN 90 >gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter asiaticus str. psy62] gi|254040425|gb|ACT57221.1| integration host factor, beta subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 100 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S L+ +I+K+ L+ +D + V L E+ + G ++I F +F V+++ +R+ Sbjct: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R + + ++ + V F+A LK+R+ Sbjct: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91 >gi|212550692|ref|YP_002309009.1| DNA-binding protein HU [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548930|dbj|BAG83598.1| DNA-binding protein HU [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 102 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 49/94 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++V +I++ G+ R+ + E+ S GE I + F TF K++ ++ Sbjct: 1 MTKKEIVVTIAENTGIDRESVLAVIEEFMREVTFSLSSGENIYLRFFGTFKAKKRAAKPA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 RN++ N + + R V FK S K +++D M+ Sbjct: 61 RNIKKNTTIFLPERYVPHFKPSDYFKNKVIDGMK 94 >gi|217034118|ref|ZP_03439538.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10] gi|216943402|gb|EEC22858.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10] Length = 94 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ +T + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVGEG 93 >gi|15645454|ref|NP_207628.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori 26695] gi|3913400|sp|O25506|DBH_HELPY RecName: Full=DNA-binding protein HU gi|2313970|gb|AAD07885.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori 26695] Length = 94 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK LK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQKVEEG 93 >gi|226357785|ref|YP_002787525.1| DNA-binding protein HU [Deinococcus deserti VCD115] gi|226320028|gb|ACO48021.1| putative DNA-binding protein HU [Deinococcus deserti VCD115] Length = 166 Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 +R S + V + ++ G+++ ++ T +++ +R G T++ ++I + Sbjct: 8 TRVQSQQAVDVFLESVLEAVRTGKSVGLAGLGTLSIRETAARTGVRPGTSERIQIPAGKK 67 Query: 81 VVFKASSIL 89 V FK ++ L Sbjct: 68 VAFKVATTL 76 >gi|294675806|ref|YP_003576421.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003] gi|294474626|gb|ADE84014.1| DNA-binding protein HU-1 [Rhodobacter capsulatus SB 1003] Length = 95 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK +T++ LV ++++ G +K +T + + + + G ++ + K + Sbjct: 1 MSKPMTKTQLVAALAEAMGSDKKTATAAIDAIADVVTKEVAAGGSVTLPGIGKVSCKARP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN T + + + V + LK + Sbjct: 61 ERQVRNPATGETMMKPADKQVKVTIAKALKDSVN 94 >gi|207092268|ref|ZP_03240055.1| dna-binding protein hu [Helicobacter pylori HPKX_438_AG0C1] gi|210135035|ref|YP_002301474.1| histone-like DNA-binding protein hu [Helicobacter pylori P12] gi|308182995|ref|YP_003927122.1| DNA-binding protein HU [Helicobacter pylori PeCan4] gi|210133003|gb|ACJ07994.1| histone-like DNA-binding protein hu [Helicobacter pylori P12] gi|297380038|gb|ADI34925.1| DNA-binding protein HU [Helicobacter pylori v225d] gi|308063375|gb|ADO05262.1| DNA-binding protein HU [Helicobacter pylori Sat464] gi|308065180|gb|ADO07072.1| DNA-binding protein HU [Helicobacter pylori PeCan4] gi|317009154|gb|ADU79734.1| DNA-binding protein HU [Helicobacter pylori India7] gi|317012646|gb|ADU83254.1| DNA-binding protein HU [Helicobacter pylori Lithuania75] Length = 94 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|300113361|ref|YP_003759936.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] gi|299539298|gb|ADJ27615.1| histone family protein DNA-binding protein [Nitrosococcus watsonii C-113] Length = 109 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 +L I+ + G+ + ++ G+ +++S F F+ + +R RN Sbjct: 23 KELAGRIAAQTGMETDQVEVVLAAFKKQVIADLTSGQEVRLSHFGKFYARHMEAREARNP 82 Query: 68 QTNQEVKIDPRRVVVFKA 85 +T + +++ PR + FKA Sbjct: 83 RTGEAIQVPPRSYLRFKA 100 >gi|302524984|ref|ZP_07277326.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4] gi|302433879|gb|EFL05695.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4] Length = 207 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++++S+ G +K + V L + I + +GE + I+ F F + + +R R Sbjct: 3 NKAQLIEALSERIG-DKKAAAEAVDGLVDIIIRTVHKGEKVTITGFGVFEKRARAARTAR 61 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 N +T + V++ V F+A + K I + K Sbjct: 62 NPRTGEAVRVKKTNVPAFRAGTTFKDVISGTKKLPKA 98 >gi|254779192|ref|YP_003057297.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38] gi|308184622|ref|YP_003928755.1| DNA-binding protein HU [Helicobacter pylori SJM180] gi|254001103|emb|CAX29058.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38] gi|308060542|gb|ADO02438.1| DNA-binding protein HU [Helicobacter pylori SJM180] Length = 94 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S ++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYSSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 G+ +++ K + +RV FK ILK+++ + Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEEG 93 >gi|291569292|dbj|BAI91564.1| DNA-binding protein HU [Arthrospira platensis NIES-39] Length = 93 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 42/88 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++LV+ ++++ L +K + F+ I + G+ + + F +K++ +R Sbjct: 1 MKTNELVQRVAEKAKLPKKRVRAILDLAFSAISEEIESGQPVVVRGLGKFTLKEQPARTK 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N +T + ++ R VV F+ K + Sbjct: 61 TNPETGETTEVPARTVVNFRVIKPSKDK 88 >gi|237740736|ref|ZP_04571217.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] gi|229422753|gb|EEO37800.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31] Length = 102 Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ + V + +K+ L KDS R V + ++ ++GE ++ F ++ VK++ +R Sbjct: 1 MTKKEFVDAFAKKGELKIKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAAREV 60 Query: 65 RNLQT 69 N QT Sbjct: 61 TNPQT 65 >gi|313203645|ref|YP_004042302.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] gi|312442961|gb|ADQ79317.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] Length = 96 Score = 79.6 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +L+ S++ + + + T + V + I SF F +++K R+ Sbjct: 1 MNHKELIASMAAKLNAPKSVVADLLDTTVTTCTELLVENKTIGFQSFGNFEIRKKEERLS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + T I P+ VV FK S+ILK+++ D Sbjct: 61 VHPSTQVRTLIPPKLVVNFKQSNILKEKLKD 91 >gi|157828936|ref|YP_001495178.1| integration host factor alpha-subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933660|ref|YP_001650449.1| integration host factor subunit alpha [Rickettsia rickettsii str. Iowa] gi|75487853|sp|Q9AKF3|HLP_RICRI RecName: Full=Histone-like DNA-binding protein gi|13235508|emb|CAC33712.1| Integration host factor alpha-subunit [Rickettsia rickettsii] gi|157801417|gb|ABV76670.1| integration host factor alpha-subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908747|gb|ABY73043.1| integration host factor alpha-subunit [Rickettsia rickettsii str. Iowa] Length = 95 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + + + + + +F +F VKQK R Sbjct: 2 TITKAKIAAMLSSKLGFSNHLCEEIVHTVFSNILE-IAKAQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I + R Sbjct: 61 GINFHTKALVIIESKKHLRFVPSSKLKALINESTR 95 >gi|312601041|gb|ADQ90296.1| Bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 168] Length = 90 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ + L K+ + F D + + I+SF TF K + Sbjct: 1 MNKKELIEQIATKTNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASSS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T ++ ++ + V FK S +LK I Sbjct: 61 FNPLTKTQITVNAKTTVRFKPSKVLKDFIA 90 >gi|296535865|ref|ZP_06898024.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC 49957] gi|296263815|gb|EFH10281.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC 49957] Length = 89 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + + G + + R L I + + SF TF V++ +R G Sbjct: 1 MSKAFIAQVLQDSLGCTGVAANRAAGELIAAIVKDMKKQGGFTLPSFGTFTVRKTKARKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VKI + V FKAS L+K + Sbjct: 61 MNPRTGEPVKIKAGKTVRFKASPNLRKSV 89 >gi|89052827|ref|YP_508278.1| histone-like DNA-binding protein [Jannaschia sp. CCS1] gi|88862376|gb|ABD53253.1| histone-like DNA-binding protein [Jannaschia sp. CCS1] Length = 96 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +T++ LV +++ E G +K + + + I G A+ I + +++ Sbjct: 3 TKPMTKTQLVAALADEMGADKKAAGAALDAVSAVITKEVANGGAVTIPGIGKVYCRERPE 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T +++K D + V + LK + Sbjct: 63 RMVRNPATGEQIKKDADKQVKVTIAKALKDSVNG 96 >gi|330952801|gb|EGH53061.1| nucleoid protein HU beta subunit [Pseudomonas syringae Cit 7] Length = 51 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 46 IKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + + F TF V + +R+GRN QT + ++I + FKA LK+ + Sbjct: 3 VVLVGFGTFSVTDRPARIGRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 51 >gi|307565356|ref|ZP_07627849.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307346025|gb|EFN91369.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 424 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L +I+K+ LS D+ +FV T+FN I D +KI TF ++ R N+ T Sbjct: 2 LATAIAKKNNLSNADAIKFVETMFNIIIDELKNSNPVKIKGLGTFKLQSVKPRESVNVNT 61 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 + V I+ + F +K + Sbjct: 62 GERVLIEGHDKISFTPDQAMKDIVNK 87 >gi|302524989|ref|ZP_07277331.1| histone family protein DNA-binding protein [Streptomyces sp. AA4] gi|302433884|gb|EFL05700.1| histone family protein DNA-binding protein [Streptomyces sp. AA4] Length = 178 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++++S+ G +K ++ V L + I + +GE + I+ F F + + +R R Sbjct: 3 NKAQLIEALSERLG-DKKVASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 N +T + V++ V F+A + K I + K Sbjct: 62 NPRTGEAVRVKKTNVPAFRAGTTFKDVISGSKKLPKA 98 >gi|307111764|gb|EFN59998.1| hypothetical protein CHLNCDRAFT_15526 [Chlorella variabilis] Length = 82 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 40/80 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L++++ + LS + V L + I + +G+ + I+ F F + + +R GRN Sbjct: 3 KRELIQAVKDQAQLSGPQADAAVNALLDTIVGTVAKGQRVAITGFGVFEARTRAARRGRN 62 Query: 67 LQTNQEVKIDPRRVVVFKAS 86 +T +E++I F A Sbjct: 63 PKTGEELQIAETVAPAFSAG 82 >gi|300783634|ref|YP_003763925.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] gi|299793148|gb|ADJ43523.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] Length = 225 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++++S+ G +K +++ V L + I + +GE + I+ F F + + +R R Sbjct: 3 NKAQLIEALSERLG-DKKVASQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 N +T + V++ V F+A + K I + K Sbjct: 62 NPRTGEAVRVKKTNVPAFRAGTTFKDVISGTKKLPKATP 100 >gi|159186493|ref|NP_396041.2| DNA binding protein [Agrobacterium tumefaciens str. C58] gi|159141553|gb|AAK90482.2| DNA binding protein [Agrobacterium tumefaciens str. C58] Length = 76 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +++ + V T+F I +A G I F F +K R RN T +K+ + Sbjct: 1 MTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNPATGATIKVAAAK 60 Query: 80 VVVFKASSILKKRIMD 95 + F+ + LK + Sbjct: 61 KLTFQPAKALKDVLNK 76 >gi|257076532|ref|ZP_05570893.1| DNA-binding protein [Ferroplasma acidarmanus fer1] Length = 90 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 44/83 (53%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S+L K ++ ++K + +T E +S G + ++ F F K++ RV RN Sbjct: 5 SELSKKVASTTNTTQKKTAEIITAFLKETVESVNAGNKVNLADFGIFERKEQKERVARNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILK 90 +T +E+K+ + VF+ASS +K Sbjct: 65 KTREEIKVPAKDKFVFRASSAIK 87 >gi|85715380|ref|ZP_01046362.1| histone-like DNA-binding protein [Nitrobacter sp. Nb-311A] gi|85697801|gb|EAQ35676.1| histone-like DNA-binding protein [Nitrobacter sp. Nb-311A] Length = 116 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S LV+ IS + GLS+ D + L + + FA F V +K Sbjct: 18 MATQMTKSQLVEKISAQAGLSKTDVKGVLEALATTGYKELKKTGVFLLPGFAKFVVIKKP 77 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R+VV + K + Sbjct: 78 ATKARKGTNPFTGEPMTFKAKPARKVVRARPVKAAKDAV 116 >gi|39938999|ref|NP_950765.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722108|dbj|BAD04598.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 + + +L+K I++ S + F + N + + + E + +SS F +K + + + Sbjct: 1 MNKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKPRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++KI + VV FK S +K + Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKTIKDQ 89 >gi|296114622|ref|ZP_06833275.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295978978|gb|EFG85703.1| histone family protein DNA-binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 89 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + I + + + + L I R + SF TF VK+ +R Sbjct: 1 MSKAFIAAVIQDSIDCTGVAANQAASDLMEAIIKELKREGGFTLPSFGTFTVKKTKARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VK+ + V FKAS LKK + Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89 >gi|187735356|ref|YP_001877468.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|187425408|gb|ACD04687.1| histone family protein DNA-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 90 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 43/87 (49%), Gaps = 2/87 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + ++ ++ + +E G ++ + + + + I + R +K F TF VK++ +R Sbjct: 1 MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRAR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 + R+ + + + + + F+ SS+L Sbjct: 61 IVRHPENGGRLLVHESKTMKFRPSSLL 87 >gi|258648340|ref|ZP_05735809.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella tannerae ATCC 51259] gi|260851505|gb|EEX71374.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella tannerae ATCC 51259] Length = 90 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + ++ K++ R + +S G+++ I SF TF VK+K R+ Sbjct: 1 MNNKEFIADLATRLDEKAKETQRLASIFSTVFAESLEEGDSLSIQSFGTFEVKKKLERIV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N Q + + P+ + FK S+ILK +I Sbjct: 61 TNPTNKQRMLVPPKLALSFKPSNILKDKIK 90 >gi|4091109|gb|AAC98965.1| unknown [Mycoplasma hyopneumoniae] Length = 96 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ + L K+ + F D + + I+SF TF K + Sbjct: 7 MNKKELIEQIAIKTNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASSS 66 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +++++ + V FK S +LK I Sbjct: 67 FNPLTKTQIQVNAKTTVRFKPSKVLKDFIA 96 >gi|150009221|ref|YP_001303964.1| putative histone-like protein [Parabacteroides distasonis ATCC 8503] gi|149937645|gb|ABR44342.1| putative histone-like protein [Parabacteroides distasonis ATCC 8503] Length = 91 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ +SK G + + + L N I + GE + I F + + + SR+ Sbjct: 1 MNKSQLIEELSKRVGNDKAEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + + + PR +V FK + L K I Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLLKEINK 91 >gi|39938529|ref|NP_950295.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39938880|ref|NP_950646.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721638|dbj|BAD04128.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721989|dbj|BAD04479.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 +T+ +L+K I++ S + F + N + + + E + +SS F +K + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKSRKAYT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++KI + VV FK S +K + Sbjct: 61 GRNPKTRKKLKIPAKTVVTFKLSKTIKDQ 89 >gi|189485144|ref|YP_001956085.1| integration host factor alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287103|dbj|BAG13624.1| integration host factor alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 86 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T++D+ ++S+ S+K++ V +F E+ +S G+ + I+ F +F++ + ++ Sbjct: 1 MTKNDIAIALSRILS-SKKEAEEAVNKVFEEMSNSLKNGDKVIITGFGSFNMFETKTKRV 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 RN +T +++ I P + + FK S Sbjct: 60 RNPRTCEKLLIAPMKKIRFKQSKKF 84 >gi|167041244|gb|ABZ06000.1| putative bacterial DNA-binding protein [uncultured marine microorganism HF4000_005D21] gi|167045748|gb|ABZ10394.1| putative bacterial DNA-binding protein [uncultured marine bacterium HF4000_APKG3108] Length = 103 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+L++ + + RKD + + + EI ++ R EA++I F F + +R+ Sbjct: 1 MVKSELMQQLCNIHPNILRKDIEKILDIIIFEIIEALYRNEAVEIRGFGRFKTVIRKARI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKD 105 GRN + + ++I ++ + +K S IL KR+ + K + + Sbjct: 61 GRNPKNSTAIQIPAKKAIKWKMSKILFKRLNKNFTENKISTN 102 >gi|23007144|ref|ZP_00049143.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 74 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 43 GEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 G+ +++ F F VK++ +R GRN +T + V + + + VFK ++ R+ G + Sbjct: 12 GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRLNRAGIGDEQ 71 Query: 103 NK 104 Sbjct: 72 PS 73 >gi|256829419|ref|YP_003158147.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256578595|gb|ACU89731.1| histone family protein DNA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 101 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 ++DL+ + E G S +++ R V + I +S +G+ I + T V ++ R G + Sbjct: 12 KADLIARLKAEMGYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKGED 71 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 T +++ F LK + Sbjct: 72 HSTGRDI--------KFSPGKRLKDAL 90 >gi|268316438|ref|YP_003290157.1| histone family protein DNA-binding protein [Rhodothermus marinus DSM 4252] gi|262333972|gb|ACY47769.1| histone family protein DNA-binding protein [Rhodothermus marinus DSM 4252] Length = 131 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQK 59 T+T+ D+ + +++ G S +V + + + I++ F F VK+ Sbjct: 6 PTLTKKDVARRVAQLMGEPIYKSEPWVNAVIEALAQLLEEADPEVRIELRDFGVFEVKRT 65 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKK 91 ++ RN +TN+ V I RR FK S LK+ Sbjct: 66 RAKPKARNPKTNETVFIPSRRKTHFKPSKRLKQ 98 >gi|54020025|ref|YP_115591.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 232] gi|71893426|ref|YP_278872.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae J] gi|72080413|ref|YP_287471.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 7448] gi|53987198|gb|AAV27399.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] gi|71851553|gb|AAZ44161.1| bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae J] gi|71913537|gb|AAZ53448.1| bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 7448] Length = 96 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L++ I+ + L K+ + F D + + I+SF TF K + Sbjct: 7 MNKKELIEQIAIKTNLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASSS 66 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T ++ ++ + V FK S +LK I Sbjct: 67 FNPLTKTQITVNAKTTVRFKPSKVLKDFIA 96 >gi|39938888|ref|NP_950654.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721997|dbj|BAD04487.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRV 63 +T+ +L+K I++ S + F + ++ E + +S F +K + + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYNIFEKTLIEAITTNEEVVLSPQIGKFKLKSRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 GRN +T +++KI + VV FK S +K ++ Sbjct: 61 GRNPKTKKKLKIPAKTVVTFKLSKNIKDQVK 91 >gi|218666551|ref|YP_002426854.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518764|gb|ACK79350.1| DNA-binding protein HU family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 192 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + RF+ I E I I T H + +R GRNL T ++++I RRVV FK Sbjct: 122 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 181 Query: 85 ASSILKKRIM 94 A+ + R+ Sbjct: 182 ATKTFQDRVN 191 >gi|255015828|ref|ZP_05287954.1| putative histone-like protein [Bacteroides sp. 2_1_7] gi|256841777|ref|ZP_05547283.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|298376992|ref|ZP_06986946.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|256736671|gb|EEU49999.1| integration host factor, alpha subunit [Parabacteroides sp. D13] gi|298265976|gb|EFI07635.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] Length = 91 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ +SK G +++ + L N I + GE + I F + + + SR+ Sbjct: 1 MNKSQLIEELSKRVGNDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + + + PR +V FK + L K I Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLLKEINK 91 >gi|75487893|sp|Q9AKK7|HLP_RICMO RecName: Full=Histone-like DNA-binding protein gi|13235521|emb|CAC33647.1| Integration host factor alpha-subunit [Rickettsia montanensis] Length = 95 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F+ I + + + + + +F +F VKQK R Sbjct: 2 TITKEKIAAMLSSKLGFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I+ ++ + F SS LK I R Sbjct: 61 GINFHTKAPVIIESKKNLRFVPSSKLKALINGSTR 95 >gi|255013881|ref|ZP_05286007.1| putative DNA-binding protein HU [Bacteroides sp. 2_1_7] gi|256839777|ref|ZP_05545286.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262381911|ref|ZP_06075049.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298375536|ref|ZP_06985493.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] gi|256738707|gb|EEU52032.1| integration host factor, beta subunit [Parabacteroides sp. D13] gi|262297088|gb|EEY85018.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298268036|gb|EFI09692.1| DNA-binding protein HU [Bacteroides sp. 3_1_19] Length = 100 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M + +L+ ++ + K+ + ++ L + + V + I + F F VK+K Sbjct: 1 MELDMKNKELITELANRMDWTSKEVSDMLSALSSVVSSKLVDNDTIYLQGFGQFEVKKKA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ N + + P+ V VFK + +K R+ + Sbjct: 61 ERISVNPANGKRYLVPPKLVPVFKPGTTVKNRLKE 95 >gi|190571020|ref|YP_001975378.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019541|ref|ZP_03335347.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357292|emb|CAQ54720.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994963|gb|EEB55605.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 103 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 5 ITRSDLVKS-----ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +++ D++ +S+ +++ D + I D R I++ TF Sbjct: 1 MSKEDIINRLKQDCVSQNIDITKSDLSNVHDMFMEMIKDQLSRKGEIRLHGIGTFSTVIN 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R RN Q + + + + V FK S L Sbjct: 61 KERKCRNPQNGEIMTVPEKTRVKFKISQTL 90 >gi|162148370|ref|YP_001602831.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542995|ref|YP_002275224.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786947|emb|CAP56531.1| putative DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl 5] gi|209530672|gb|ACI50609.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + + + + L I + + SF TF V + +R Sbjct: 1 MSKAFIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VK+ + V FKAS LKK + Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89 >gi|262384108|ref|ZP_06077244.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301311014|ref|ZP_07216943.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|262295006|gb|EEY82938.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300831077|gb|EFK61718.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 91 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +S L++ +SK G +++ + L N I + GE + I F + + + SR+ Sbjct: 1 MNKSQLIEELSKRVGNDKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRLA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN ++ + + + PR +V FK + L K I Sbjct: 61 RNPKSGETLMLIPRTIVHFKCAPNLVKEINK 91 >gi|198274637|ref|ZP_03207169.1| hypothetical protein BACPLE_00789 [Bacteroides plebeius DSM 17135] gi|198272084|gb|EDY96353.1| hypothetical protein BACPLE_00789 [Bacteroides plebeius DSM 17135] Length = 96 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 43/91 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T + ++ +S+ + K++ + + + S + + + F +F V++K + Sbjct: 1 MTNKEFIEELSRRLEKTEKETASLLASFTECVSQSLQENKTVVLQDFGSFEVEKKMEYIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T Q + P V FK+++ LK R+ + Sbjct: 61 VNPVTKQRFLVPPELAVSFKSATSLKGRVKN 91 >gi|291612681|ref|YP_003522838.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291582793|gb|ADE10451.1| histone family protein DNA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 93 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S+ + L G + + VK+ +R GRN T E+ I + Sbjct: 20 SKTTVKAVLDELAKVASAELKAGNEVTLPGLGKLTVKKSAARKGRNPATGAEMDIPAKTK 79 Query: 81 VVFKASSILKKRIM 94 F A+ LK + Sbjct: 80 PHFSAAKALKDAVA 93 >gi|300783647|ref|YP_003763938.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] gi|299793161|gb|ADJ43536.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32] Length = 261 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 ++ L++++++ G +K ++ V L + I + +GE + I+ F F + + +R R Sbjct: 3 NKAQLIEALTERLG-DKKAASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTAR 61 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 N +T + V++ V F+A + K I + K Sbjct: 62 NPRTGEAVRVKKTNVPAFRAGTTFKDVISGAKKLPKATP 100 >gi|330993012|ref|ZP_08316950.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1] gi|329759782|gb|EGG76288.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1] Length = 89 Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + I + + + L I R + SF TF VK+ +R Sbjct: 1 MSKAFIAAVIQDSIDCTGVAANQAAADLIQAIVKELKREGGFTLPSFGTFTVKKTKARQA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VK+ + V FKAS LKK + Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89 >gi|302346019|ref|YP_003814372.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] gi|302150112|gb|ADK96374.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] Length = 91 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 32/64 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L++ I+ +S+ + + + I ++ G+ +++ F TF ++ + G Sbjct: 1 MNKTELIEKIAANAEVSKAAAKKALDATTEAIKEALAAGDKVQLVGFGTFATTERPAHEG 60 Query: 65 RNLQ 68 N + Sbjct: 61 INPR 64 >gi|207108675|ref|ZP_03242837.1| dna-binding protein hu [Helicobacter pylori HPKX_438_CA4C1] Length = 89 Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ + + + S++++ ++ + + +GE++++ F F ++ + Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 G+ +++ K + +RV FK ILK++ Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQK 89 >gi|254457259|ref|ZP_05070687.1| DNA-binding protein HU [Campylobacterales bacterium GD 1] gi|207086051|gb|EDZ63335.1| DNA-binding protein HU [Campylobacterales bacterium GD 1] Length = 94 Score = 77.3 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++ V+ + G ++ ++ + + + V+ E + + F +F + + Sbjct: 1 MNKAQFVELVQANGGYKTKVEAELAIKAFTEAVTAALVKKEDVSLVGFGSFAANLQKGKS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+ T++ + V FKA LK R+ Sbjct: 61 GKVPGTDKTYTTQDKMVPKFKAGKGLKDRVA 91 >gi|221054358|ref|XP_002258318.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193808387|emb|CAQ39090.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 188 Score = 77.3 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 50/100 (50%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ IT+ +++ +S E S+K + + +F+ I E I I F ++ + Sbjct: 55 SQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKK 114 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R +N++T +++ I+ + FK S I + I +++ +K Sbjct: 115 RCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKK 154 >gi|162146838|ref|YP_001601299.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl 5] gi|161785415|emb|CAP54963.1| putative DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + + +T+ L I + + SF TF V + +R Sbjct: 1 MSKAFIAAVLQDSLACTGVAATKAADDLVGAIVAELKQEGGFTLPSFGTFTVHKTKARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VK+ + V FKAS +LKK + Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPVLKKAV 89 >gi|91204996|ref|YP_537351.1| integration host factor alpha-subunit [Rickettsia bellii RML369-C] gi|157827672|ref|YP_001496736.1| integration host factor alpha-subunit [Rickettsia bellii OSU 85-389] gi|91068540|gb|ABE04262.1| Integration host factor alpha-subunit [Rickettsia bellii RML369-C] gi|157802976|gb|ABV79699.1| Integration host factor alpha-subunit [Rickettsia bellii OSU 85-389] Length = 84 Score = 76.9 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 ++ E G S+ V +F I D + + + + +F +F VK K SR G N T ++ Sbjct: 2 LNAELGFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSRPGINFHTKSQI 60 Query: 74 KIDPRRVVVFKASSILKKRIMDD 96 I+P+ ++ F S+ LK I ++ Sbjct: 61 TIEPKNILRFVPSAKLKALINEN 83 >gi|83950622|ref|ZP_00959355.1| DNA-binding protein HU [Roseovarius nubinhibens ISM] gi|83838521|gb|EAP77817.1| DNA-binding protein HU [Roseovarius nubinhibens ISM] Length = 95 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T+S L +++E G +K + + + I G A+ + + +++ Sbjct: 1 MAKPLTKSQLSAVLAEEMGSDKKSAAAALDAVCAVITREVSNGGAVTLPGVGKIYCRERP 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN T Q++K + +VV + LK + Sbjct: 61 ERMVRNPATGQQIKKEADKVVKMTIAKALKDSVNG 95 >gi|46581589|ref|YP_012397.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120601251|ref|YP_965651.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|46451012|gb|AAS97657.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|120561480|gb|ABM27224.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] gi|311235232|gb|ADP88086.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 95 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 5 ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+++ V ++ ++ + + T + D G+ +++ V ++ + Sbjct: 2 LTKAEFVAALKDSLPDVFETKVSAEKAYDTFCKIMADGVANGQGVRLPGVGALTVTERAA 61 Query: 62 RVGRNLQTNQEVKID 76 R GRN QT Q + I Sbjct: 62 RTGRNPQTGQTITIP 76 >gi|150007590|ref|YP_001302333.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|301310444|ref|ZP_07216383.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|149936014|gb|ABR42711.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC 8503] gi|300832018|gb|EFK62649.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 96 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +L+ ++ + K+ + ++ L + + V + I + F F VK+K R+ Sbjct: 1 MKNKELITELANRMDWTSKEVSDMLSALSSVVSSKLVDNDTIYLQGFGQFEVKKKAERIS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N + + P+ V VFK + +K R+ + Sbjct: 61 VNPANGKRYLVPPKLVPVFKPGTTVKNRLKE 91 >gi|330813566|ref|YP_004357805.1| integration host factor beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486661|gb|AEA81066.1| integration host factor beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 101 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 3 KTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT + +L++ + ++ + D + V +F + + G ++I F K Sbjct: 4 KTFVKKELIQELQSKYPKILNADIEKTVEGIFKYLSNQLASGHNVEIRGFGMLKTKATKP 63 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R RN ++ + V++ +R + +K+S +L Sbjct: 64 RTARNPKSGESVEVPAKRKISWKSSKLL 91 >gi|289548636|ref|YP_003473624.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] gi|289182253|gb|ADC89497.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] Length = 95 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 50/95 (52%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R +L++ +S+E +SR+D+ + V + + + ++ +++ +F F + + R Sbjct: 1 MNRENLIRRVSEELKVSREDARKLVRGIVESMVEVLIQHRKLELRNFGVFRIGKIRGRFV 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 +N +T E+ + V FK S + ++I + +G Sbjct: 61 KNPRTGVEMYVAESYTVRFKPSRHVIRKINGENQG 95 >gi|270643381|ref|ZP_06222167.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212] gi|270317269|gb|EFA28837.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212] Length = 46 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%) Query: 49 SSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 F TF V ++ +R GRN QT E++I +V F + LK I Sbjct: 1 IGFGTFKVNERAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 46 >gi|260889031|ref|ZP_05900294.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] gi|260861091|gb|EEX75591.1| DNA-binding protein HU [Leptotrichia hofstadii F0254] Length = 70 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 V + + + G++++ + TF VK++ +R G N QT +E+KI Sbjct: 1 MVNQFLETVEKTLLNGDSVQFVGWGTFEVKERAARTGINPQTKKEIKIPA 50 >gi|13357842|ref|NP_078116.1| DNA-binding protein HU-alpha (HU-2) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971917|ref|ZP_02554194.1| DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282463|ref|ZP_02690130.1| DNA-binding protein HU [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308619|ref|ZP_02691294.1| DNA-binding protein HU [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762221|ref|YP_001752366.1| DNA-binding protein HU [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|14194633|sp|Q9PQK9|DBH_UREPA RecName: Full=DNA-binding protein HU gi|11356844|pir||H82909 DNA-binding protein Hu-alpha (HU-2) UU282 [imported] - Ureaplasma urealyticum gi|6899255|gb|AAF30691.1|AE002125_2 DNA-binding protein Hu-alpha (HU-2) [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827798|gb|ACA33060.1| DNA-binding protein HU [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902890|gb|EDT49179.1| DNA-binding protein HU [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675752|gb|EDT87657.1| DNA-binding protein HU [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700669|gb|EDU18951.1| DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 130 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 43/95 (45%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K TRS ++ +SK + +K + F+ T + R + +++ + F V + R Sbjct: 6 KAKTRSQMIDELSKMLNIEKKQTKAFMDTYEAFLILELSRAKEVRLGNIGKFKVSVRAER 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 G N +T + V I + + F + +K+ I + Sbjct: 66 KGINPKTGETVIIPEKTIPKFTFTKGIKEIINAGI 100 >gi|298385402|ref|ZP_06994960.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] gi|298261543|gb|EFI04409.1| DNA-binding protein HU [Bacteroides sp. 1_1_14] Length = 91 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 41/90 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++V+ + +SR + + V +F+ I +S RGE++ I FAT + Sbjct: 1 MKKIEIVEHVINNTTISRSQAIQAVDCVFDAIENSLCRGESVYIRGFATIKAHTSKRKKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 RN+ V I +R S LK R+ Sbjct: 61 RNISKGTTVVIPAQRSAKLIISKQLKARMN 90 >gi|189461333|ref|ZP_03010118.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM 17136] gi|189431862|gb|EDV00847.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM 17136] Length = 371 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 46/95 (48%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS T+ DL +++ ++ D+ FV TLF + +S + + +KI TF + + Sbjct: 1 MSDKFTQQDLADLLAQRHEMNPADAEAFVRTLFALVEESVISDKYVKIKGLGTFKLIEVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R ++ T + ++I + F S +++ + Sbjct: 61 ARESIDINTGERIEIREHSRISFTPDSTMRETVNK 95 >gi|298251892|ref|ZP_06975695.1| histone family protein DNA-binding protein [Ktedonobacter racemifer DSM 44963] gi|297546484|gb|EFH80352.1| histone family protein DNA-binding protein [Ktedonobacter racemifer DSM 44963] Length = 120 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 47/94 (50%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+ ++ + G++ K++++ + + + + +G +++ F T++++ R ++ Sbjct: 13 KDELIHQVAAKAGMNLKETSKIIDAFTDVVREDVSQGHEVRLMGFGTWNLRDVAPRKVKS 72 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 ++ ++ I R+ V F ++L + R Sbjct: 73 IRGGDQITIPARKRVGFSVGAVLSQAAQGAEHTR 106 >gi|156097106|ref|XP_001614586.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148803460|gb|EDL44859.1| hypothetical protein, conserved [Plasmodium vivax] Length = 188 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 50/100 (50%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S+ IT+ +++ +S E S+K + + +F+ I E I I F ++ + Sbjct: 55 SQAITKKQIIEEVSMETKESKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKK 114 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 R +N++T +++ I+ + FK S I + I +++ ++ Sbjct: 115 RCIKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKR 154 >gi|254819110|ref|ZP_05224111.1| DNA-binding protein HU [Mycobacterium intracellulare ATCC 13950] Length = 207 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 44/85 (51%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 ++++ R+ +T V + + I + +G+++ I+ F F +++ +RV RN +T + V Sbjct: 2 LTQKLNTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETV 61 Query: 74 KIDPRRVVVFKASSILKKRIMDDMR 98 K+ P V F+ + K + R Sbjct: 62 KVKPTSVPAFRPGAQFKAVVSGAQR 86 >gi|209543183|ref|YP_002275412.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530860|gb|ACI50797.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + + + + + L I + SF TF V + +R Sbjct: 1 MSKAFIAAVLQDSLACTGVAAAKAADDLVGAIVAELKHEGGFTLPSFGTFSVHKTKARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VK+ + V FKAS +LKK I Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPVLKKTI 89 >gi|162146745|ref|YP_001601204.1| DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209543268|ref|YP_002275497.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|161785320|emb|CAP54866.1| putative DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209530945|gb|ACI50882.1| histone family protein DNA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 89 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++++ + I + + + + L I + + SF TF VK+ +R Sbjct: 1 MSKAFIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARKA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 N +T + VK+ + V FKAS LKK + Sbjct: 61 LNPRTGEPVKVKAGKTVRFKASPNLKKAV 89 >gi|156088029|ref|XP_001611421.1| hypothetical protein [Babesia bovis T2Bo] gi|154798675|gb|EDO07853.1| conserved hypothetical protein [Babesia bovis] Length = 175 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+T+ L+ I++ +++KD V I + + I+ F FH +G R Sbjct: 77 ETVTKKQLISEIAQTTNMTQKDVGIVVDEFLKSIVKHLGENKEVSIAKFGLFHNSLRGPR 136 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + +NLQT + P V + +K + ++ Sbjct: 137 LMKNLQTGEMYTAKPVYVPNVRFYEAVKAEVNQSLK 172 >gi|92117005|ref|YP_576734.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14] gi|91799899|gb|ABE62274.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14] Length = 99 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S LV+ IS + GLS+KD + L + A + FA F V +K Sbjct: 1 MATQMTKSQLVEKISAQAGLSKKDVKGVLEALATTGYKELKKTGAFLLPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R++V + K + Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99 >gi|281491375|ref|YP_003353355.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147] gi|281375116|gb|ADA64634.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147] Length = 108 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 45/91 (49%), Gaps = 7/91 (7%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +L+ ++ LS+ ++ + I G + IS+F TF V+++ +RV + Sbjct: 4 KQELIDYVADRTELSKLNAAKA-------ITYYISEGTPVHISNFGTFEVRKRAARVSHD 56 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 + + +++ + + + VF+A LK ++ Sbjct: 57 VHSREKILVGEQNIPVFRAGKALKLATKQEL 87 >gi|49188522|ref|YP_025620.1| single-stranded binding protein [Pseudomonas syringae pv. maculicola] gi|47525105|gb|AAT35119.1| single-stranded binding protein [Pseudomonas syringae pv. maculicola] gi|320326966|gb|EFW82983.1| single-stranded binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 95 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 39/94 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN T ++I ++ + F + +L I + Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGL 95 >gi|323345507|ref|ZP_08085730.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC 33269] gi|323093621|gb|EFZ36199.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC 33269] Length = 441 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 5 ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + S L I K++ LS+K++ FV+ +F I ++ + +KI TF V R Sbjct: 3 MNKISYLSTFIQKKYSLSQKEADNFVSQMFEVISEALHTEKQVKIKGLGTFKVMSVSPRE 62 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N+ T + I+ R + F + ++ R+ Sbjct: 63 SVNVNTGERFVIEGRDKISFTPETSMRDRVN 93 >gi|283852590|ref|ZP_06369857.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] gi|283572038|gb|EFC20031.1| histone family protein DNA-binding protein [Desulfovibrio sp. FW1012B] Length = 86 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+++ +K + E G+++ + + + + GE++K TF R G Sbjct: 1 MTQTEFIKRFATESGMTQDAAKNCLALAGQMVEATMRAGESVKFPCLGTFTPVATKERQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 RN +T + + I + FKA+ Sbjct: 61 RNPRTGEPLTIPAGVRIKFKAA 82 >gi|116620138|ref|YP_822294.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|116223300|gb|ABJ82009.1| histone family protein DNA-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 100 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 1 MSKT-ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M+ T +T++ LV+ ++++ ++ K + + L + + + Sbjct: 1 MAATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +R+GRN T + +KI ++VV F+ + K I Sbjct: 61 KARMGRNPATGEAIKIAAKKVVKFRVAKSAKDAI 94 >gi|238898294|ref|YP_002923975.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466053|gb|ACQ67827.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 75 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 36/64 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +++L+ ++ + +S+ + V +L N + + G A+ ++ F TF VK++ +R G Sbjct: 1 MKKNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTG 60 Query: 65 RNLQ 68 R + Sbjct: 61 RTPK 64 >gi|301384246|ref|ZP_07232664.1| single-stranded binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063657|ref|ZP_07255198.1| single-stranded binding protein [Pseudomonas syringae pv. tomato K40] Length = 95 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V + +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVADRPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN T ++I ++ + F + +L I + Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGL 95 >gi|282881456|ref|ZP_06290130.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] gi|281304682|gb|EFA96768.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1] Length = 457 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 5 ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + +DL + ++ L+++++ F+ + + + +KI TF V R Sbjct: 1 MIKLTDLAAVLVEKAELTKREADFFIPLFIDVLTTGLKSDKQVKIKGLGTFKVTAVSPRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 ++ T + + I+ R + F L+ R+ Sbjct: 61 SVDVNTGERILIEGRDKISFTPEVALRDRVN 91 >gi|39938803|ref|NP_950569.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39938843|ref|NP_950609.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721912|dbj|BAD04402.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721952|dbj|BAD04442.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63 +T+ +L+K I++ S + F + ++ E + + F +K + + + Sbjct: 1 MTKKELIKKIAEVNKTSISKTEEFYHIFEKTLIEAITTNEEVVLSPQIGKFQLKPRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++KI + VV FK S +K + Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIKDK 89 >gi|253578053|ref|ZP_04855325.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850371|gb|EES78329.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 209 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+T+S ++ +++ L KD+ +F E+ G IK F TF + + Sbjct: 112 GRTLTQSAFIRRLARSNDLQIKDADIITKQVFRELISCLKDGFCIKFEGFGTFGTYTRKA 171 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R ++ T + I + VV FK S+ L Sbjct: 172 RSVKHPVTQERCTIKEKAVVKFKPSAKL 199 >gi|34557406|ref|NP_907221.1| hypothetical protein WS1019 [Wolinella succinogenes DSM 1740] gi|34483122|emb|CAE10121.1| hypothetical protein WS1019 [Wolinella succinogenes] Length = 99 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Query: 1 MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M + + +++ V+ + + G ++K++ + V+ + + + +++ F F + Sbjct: 1 MEECMNKAEFVELVKEVGGFETKKEAEKAVSAFTAAVEKALEKKGNVELVGFGKFEAVLQ 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + G+ ++++ K + V FK LK + + Sbjct: 61 KGKEGKVPGSDKKYKTKDKFVPKFKPGKGLKDLVAKAKK 99 >gi|119383159|ref|YP_914215.1| histone family protein DNA-binding protein [Paracoccus denitrificans PD1222] gi|119372926|gb|ABL68519.1| histone family protein DNA-binding protein [Paracoccus denitrificans PD1222] Length = 99 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK +T++ LV +++ E G +K + + L + + G A+ + + + Sbjct: 6 SKPMTKTQLVATLADEMGSDKKTAAAALDALSAVVSRTVAEGGALTLPGIGKVACRTRPE 65 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R RN QT + + +VV + LK + Sbjct: 66 RQVRNPQTQEMMTKPADKVVKVTIAKALKDSVN 98 >gi|310780573|ref|YP_003968905.1| histone family protein DNA-binding protein [Ilyobacter polytropus DSM 2926] gi|309749896|gb|ADO84557.1| histone family protein DNA-binding protein [Ilyobacter polytropus DSM 2926] Length = 92 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + + + G S+ ++ R + L + I + V G + + + V ++ R Sbjct: 1 MTKKEFIAKYCENGGFVSKAEAERKLNALLDTIENILVDGNEVNFIGWGKWEVVERAKRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN QT +++ + ++VV FK L +I + Sbjct: 61 VRNPQTGRKMTVKAKKVVKFKPGKKLVDKIAN 92 >gi|84996135|ref|XP_952789.1| bacterial histone-like protein [Theileria annulata strain Ankara] gi|65303786|emb|CAI76163.1| bacterial histone-like protein, putative [Theileria annulata] Length = 170 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + D+V + ++ ++K+ + V + I + +S F F +G R R Sbjct: 66 NKRDIVSEVGEKLNKTQKEVGQVVDEFLSSIKRHLSNDSEVSLSKFGVFKNSLRGERRMR 125 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 NLQT + P V + K + D ++ + Sbjct: 126 NLQTGEIFTAKPVHVPTLRFYDTFKAELNDKLKSKDKRN 164 >gi|331695682|ref|YP_004331921.1| histone family protein DNA-binding protein [Pseudonocardia dioxanivorans CB1190] gi|326950371|gb|AEA24068.1| histone family protein DNA-binding protein [Pseudonocardia dioxanivorans CB1190] Length = 185 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 1/97 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + ++ LV +++ G R+ + V + + I D+ G ++ ++ F F + + +RV Sbjct: 1 MNKTQLVDALAARLG-DRRTAASAVDGVLSIIVDTVGSGGSVSLTGFGVFEARARAARVA 59 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 RN +T V + P V F+ K + + + Sbjct: 60 RNPRTGDTVAVPPTVVPSFRPGIAFKATVSGNGAAAE 96 >gi|86608286|ref|YP_477048.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556828|gb|ABD01785.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)] Length = 195 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR L + ++ + GL+ + + + + + I +G +++++ F TF ++ + +R Sbjct: 93 LTRRLLARQMAAQVDGLTVEMAAAALEAMLDSISQCLAQGGSVRLARFGTFSLRHRPARQ 152 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 + +T V I V F S L Sbjct: 153 TYHPRTKAPVHIPAADVPHFVPSPEL 178 >gi|67458593|ref|YP_246217.1| integration host factor alpha-subunit [Rickettsia felis URRWXCal2] gi|75536941|sp|Q4UN06|HLP_RICFE RecName: Full=Histone-like DNA-binding protein gi|67004126|gb|AAY61052.1| Integration host factor alpha-subunit [Rickettsia felis URRWXCal2] Length = 95 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F I + + + + + +F +F VKQK R Sbjct: 2 TITKEKIATMLSSKLGFSNNLCEEIVNTVFFNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N T + I+ ++ + F S+ LK I + Sbjct: 61 GINFHTKSPIIIESKKNLRFIPSTKLKALINE 92 >gi|157826134|ref|YP_001493854.1| integration host factor alpha-subunit [Rickettsia akari str. Hartford] gi|157800092|gb|ABV75346.1| Integration host factor alpha-subunit [Rickettsia akari str. Hartford] Length = 96 Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT+ + +S + G S V T+F+ I + R + + + +F F VK K R Sbjct: 2 TITKEKISAMLSSKLGFSNNLCKEIVNTVFSNILE-IAREQKLTLKNFGRFEVKHKNPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G N T V I+ ++ + F S+ LK + Sbjct: 61 GINFHTKSPVIIESKKSLRFVPSAKLKALVNK 92 >gi|78776705|ref|YP_393020.1| histone-like DNA-binding protein [Sulfurimonas denitrificans DSM 1251] gi|78497245|gb|ABB43785.1| Histone-like DNA-binding protein [Sulfurimonas denitrificans DSM 1251] Length = 94 Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++ V+ + ++ ++ + + + V+ E + + F +F + + Sbjct: 1 MNKAQFVELVQASGNYKTKVEAEAAIKAFTEAVASALVKKEDVSLVGFGSFGASLQKGKS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+ T++ + V FKA LK R+ Sbjct: 61 GKVPGTDKTYTTKDKMVPKFKAGKGLKDRVA 91 >gi|257485822|ref|ZP_05639863.1| single-stranded binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013726|gb|EGH93782.1| single-stranded binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 104 Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 GRN T ++I ++ + F + +L I Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGSPQNSEK 101 >gi|322836844|ref|YP_004210758.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165931|gb|ADW71631.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 125 Score = 74.6 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 38/86 (44%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +LVK ++++ LS K S F L + + I Q+ +R+GRN Q Sbjct: 37 ELVKLVAEKMELSLKQSAAFFDLLASTAIQETKKNGEFTIPGLGKLVKAQRAARIGRNPQ 96 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIM 94 T + +KI + V F+ + K I Sbjct: 97 TGESIKIKAKTAVKFRVAKAAKDMIA 122 >gi|315022339|gb|EFT35367.1| DNA-binding protein HU-beta [Riemerella anatipestifer RA-YM] Length = 87 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGE-AIKISSFATFHVKQKGSRVGRNLQTNQE 72 ++K+ +++ + + + + N + ++ + + + + F TF V ++ +R G N T + Sbjct: 1 MAKDAEITKAAAKKALESFVNAVTETLKKKDGKVSLVGFGTFSVAERAARQGINPATKKA 60 Query: 73 VKIDPRRVVVFKASSILKKRIMDDMR 98 +KI ++V FKA S L + + Sbjct: 61 IKIPAKKVAKFKAGSELADAVAGAKK 86 >gi|213972297|ref|ZP_03400361.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] gi|213922946|gb|EEB56577.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato T1] Length = 95 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 38/94 (40%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V + +R Sbjct: 2 ALTKDQLVAGIAEAIDAQKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVADRPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 GRN T ++I ++ + F + +L I + Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGL 95 >gi|327313607|ref|YP_004329044.1| DNA-binding protein HU [Prevotella denticola F0289] gi|326944082|gb|AEA19967.1| DNA-binding protein HU [Prevotella denticola F0289] Length = 419 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%) Query: 1 MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 M+KT + + ++++ + L D+ FV T F I G +K+ TF V+ Sbjct: 1 MAKTGMQM----ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQ 56 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I+ V F + +K+ + Sbjct: 57 SVKPRESVNVNTGERVLIEGHDKVTFTPDTAMKELVNK 94 >gi|325854317|ref|ZP_08171516.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] gi|325484111|gb|EGC87045.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A] Length = 419 Score = 74.2 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%) Query: 1 MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 M+KT + + ++++ + L D+ FV T F I G +K+ TF V+ Sbjct: 1 MAKTGMQM----ITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQ 56 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I+ V F + +K+ + Sbjct: 57 SVKPRESVNVNTGERVLIEGHDKVTFTPDTAMKELVNK 94 >gi|154492266|ref|ZP_02031892.1| hypothetical protein PARMER_01900 [Parabacteroides merdae ATCC 43184] gi|218261906|ref|ZP_03476579.1| hypothetical protein PRABACTJOHN_02250 [Parabacteroides johnsonii DSM 18315] gi|154087491|gb|EDN86536.1| hypothetical protein PARMER_01900 [Parabacteroides merdae ATCC 43184] gi|218223700|gb|EEC96350.1| hypothetical protein PRABACTJOHN_02250 [Parabacteroides johnsonii DSM 18315] Length = 100 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M + +LV ++ G + ++ ++ L + + V + I + F F VK+K Sbjct: 1 MDADMKNKELVTELAARMGWTAQEVAETLSVLSSVVSSRLVDNDTIYLQGFGQFEVKKKA 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ N + + P+ V VFK + +K ++ + Sbjct: 61 ERISVNPSNGKRYLVPPKLVPVFKPGTTVKNKLKE 95 >gi|313203644|ref|YP_004042301.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] gi|312442960|gb|ADQ79316.1| histone family protein DNA-binding protein [Paludibacter propionicigenes WB4] Length = 494 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 49/102 (48%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +++ +S + +S++ S F+ + + I +S + G+ +KI +F TF ++ R N+ Sbjct: 10 EVIDLVSSKAQVSKRVSEDFLKVMISTIEESLLSGDVVKIKNFGTFKLQWNEPRKSVNVH 69 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 + +++ + V F +LK + + + D +P Sbjct: 70 SGEDILLAGYYKVTFTPDVVLKDLVNEPFAHLTPVELDSENP 111 >gi|15604549|ref|NP_221067.1| integration host factor alpha-subunit (himA) [Rickettsia prowazekii str. Madrid E] gi|81554787|sp|Q9ZCL7|HLP_RICPR RecName: Full=Histone-like DNA-binding protein gi|3861244|emb|CAA15143.1| INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) [Rickettsia prowazekii] gi|292572345|gb|ADE30260.1| Integration host factor alpha-subunit [Rickettsia prowazekii Rp22] Length = 95 Score = 74.2 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + +S + G S V T+F+ I + + + + + +F +F VKQK R Sbjct: 2 TITKNKISLMLSSKLGFSNNLCEAIVNTVFSNILE-IAKVQKLTLKNFGSFEVKQKTPRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 G N T V I ++ + F S LK I M Sbjct: 61 GINFHTKSPVMIASKKNLRFTPSEKLKALINKSM 94 >gi|319956219|ref|YP_004167482.1| histone family protein DNA-binding protein [Nitratifractor salsuginis DSM 16511] gi|319418623|gb|ADV45733.1| histone family protein DNA-binding protein [Nitratifractor salsuginis DSM 16511] Length = 92 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+++ V+ + ++ G S+ + + + I ++ R E + + F TF + + Sbjct: 1 MTKAEFVELVQEKGGYESKAAAEKAIKAFTEAIEEALKRKETVTLVGFGTFSTVEVPEKS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G+ T++ FK +K + Sbjct: 61 GKVPGTDKTYTKPAHTAPKFKFGKSIKDAVAK 92 >gi|51473887|ref|YP_067644.1| integration host factor alpha subunit [Rickettsia typhi str. Wilmington] gi|81636348|sp|Q9AKA7|HLP_RICTY RecName: Full=Histone-like DNA-binding protein gi|13235499|emb|CAC33761.1| Integration host factor alpha-subunit [Rickettsia typhi] gi|51460199|gb|AAU04162.1| integration host factor alpha subunit [Rickettsia typhi str. Wilmington] Length = 95 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT++ + ++ + G S V T+F+ I + + + + + +F +F VKQK R Sbjct: 2 TITKNKISLMLNSKLGFSNNLCEEIVNTVFSNILE-IAKVQKLTLKNFGSFEVKQKKQRP 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G N T V I ++ + F S LK I MR Sbjct: 61 GINFHTKSPVMIASKKNLRFSPSEKLKALINKSMR 95 >gi|331703904|ref|YP_004400591.1| hypothetical protein MLC_8840 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802459|emb|CBW54614.1| Hypothetical transmembrane protein, Predictedhistone like DNA binding protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 299 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+ L+ + ++ +++ F + V G+ + ++ F F +K + Sbjct: 206 VTKGMLLDELYEDPEFIEMTKVSIKTIFDKAFIVASKNLVAGDHVVLAKFGKFETVEKEA 265 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ N T +++++ +VV FK S +K+++ + Sbjct: 266 QMKMNPLTQEQIEVPAHKVVKFKLSKSVKEKMNE 299 >gi|75675396|ref|YP_317817.1| histone-like DNA-binding protein [Nitrobacter winogradskyi Nb-255] gi|74420266|gb|ABA04465.1| histone-like DNA-binding protein [Nitrobacter winogradskyi Nb-255] Length = 99 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S LV+ IS + GLS+KD + L + A + FA F V +K Sbjct: 1 MAAQMTKSQLVEKISTQVGLSKKDVKGVLEALATTGYKELKKTGAFLLPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R++V + K + Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99 >gi|237750349|ref|ZP_04580829.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373879|gb|EEO24270.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 97 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +SD VK+I + G ++K D+ + + ++ + I + +++ F F + + Sbjct: 1 MKKSDFVKTIKEIGGYAKKEDAEKALDSVVDAITHVLKSNDTVELVGFGKFENAVQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+ T++ K + V FK LK + Sbjct: 61 GKVPGTDKTYKTADKMVPKFKPGKALKDEVA 91 >gi|86605026|ref|YP_473789.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab] gi|86553568|gb|ABC98526.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab] Length = 108 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + R L + ++ + GL+ K + + + + I G +++++ F TF ++ + +R Sbjct: 6 LNRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRPRPARQ 65 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPS 111 + +T V I +V F S L R+ D PS Sbjct: 66 TYHPRTKAPVHIPAAQVPYFVPSPEL------GHPRRERRGDLEAPPS 107 >gi|291276956|ref|YP_003516728.1| DNA-binding HU-like protein [Helicobacter mustelae 12198] gi|290964150|emb|CBG39995.1| DNA-binding protein HU homolog [Helicobacter mustelae 12198] Length = 93 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++ V + + ++KD+ + + ++ + E++++ F F + + Sbjct: 1 MNKAQFVDLVKEAGAYATKKDAEVAIDAFVKAVENALTKKESVELVGFGKFETVLQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G+ +++ K R V FK LK + Sbjct: 61 GKVPGSDKSYKTADRFVPKFKPGKGLKDLVSK 92 >gi|330944003|gb|EGH46189.1| single-stranded binding protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 97 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T ++I ++ + F ++ +L I Sbjct: 62 GRNPSTGAAIEIAAKKAIKFVSAKVLNDAINKG 94 >gi|193216658|ref|YP_001999900.1| DNA-binding protein HU [Mycoplasma arthritidis 158L3-1] gi|193001981|gb|ACF07196.1| DNA-binding protein HU [Mycoplasma arthritidis 158L3-1] Length = 92 Score = 72.6 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ + S+ G + + I + V+ + IS F TF V +K Sbjct: 1 MNKRELIVAASENTGKPQVLIEEVFDEIQRLIIEELVKKNTVSISGFGTFWVIEKPESQR 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N T +++ + + F+ S++ K ++ Sbjct: 61 INYFTKEKIVVAAKTEPKFRFSNVFKAQVN 90 >gi|198284191|ref|YP_002220512.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248712|gb|ACH84305.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 93 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + RF+ I E I I T H + +R GRNL T ++++I RRVV FK Sbjct: 23 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 82 Query: 85 ASSILKKRIM 94 A+ + R+ Sbjct: 83 ATKTFQDRVN 92 >gi|164504804|gb|ABY59642.1| DNA-binding protein HU [Flammeovirga yaeyamensis] Length = 79 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%) Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 + + FN + D G I I F +F K++ S+ GR++ + + I + FK S Sbjct: 1 QVLEDFFNVVKDKMAEGNNIYIRRFGSFVNKKRASKKGRDISRGEIIPIPEHFIPSFKPS 60 Query: 87 SILKKRIMDDMRGRKCNKD 105 ++I + R N++ Sbjct: 61 KEFVEKIKGSDKVRLINEN 79 >gi|288926971|ref|ZP_06420867.1| DNA-binding protein HU [Prevotella buccae D17] gi|288336254|gb|EFC74639.1| DNA-binding protein HU [Prevotella buccae D17] Length = 493 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 2 SKTITR---SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 K + R ++L +++S + +S+ D+ FV +F + D + + +KI SF TF + Sbjct: 3 GKKMNRIGITELARTLSSKHNMSQADAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGS 62 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R ++ T + + I+ R + F + L+ + Sbjct: 63 VKDRESVDVNTGERIVIEGRNKINFTPDNALRDFVN 98 >gi|32474163|ref|NP_867157.1| DNA-binding protein HU [Rhodopirellula baltica SH 1] gi|32444700|emb|CAD74702.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1] gi|327537506|gb|EGF24228.1| DNA-binding protein HU [Rhodopirellula baltica WH47] Length = 105 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 8/96 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQ---KG 60 T++ ++ +I++E L++KD + +L EI S +G I +K K Sbjct: 10 TKTQIIANIAEETELTKKDVAAVLDSLAAEIEKSLQKGGPGQFAIPGLCKIVLKDVPAKP 69 Query: 61 SRVGRNLQTNQEV---KIDPRRVVVFKASSILKKRI 93 R GRN +E+ + + + LK+ I Sbjct: 70 KRKGRNPANGEEIWLAPKPASKKLTIRPLKGLKEMI 105 >gi|299133418|ref|ZP_07026613.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2] gi|298593555|gb|EFI53755.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2] Length = 99 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S L++ I++ LS++D +L + + FA F V +K Sbjct: 1 MATQMTKSQLIEKIAEANELSKRDVKGVFESLATIGYKELKKNGTFLLPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R++V + K + Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99 >gi|39939140|ref|NP_950906.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722249|dbj|BAD04739.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63 + + +L+K I+ S + F N + + E + + F +K + S + Sbjct: 1 MNKKELIKKIALANKTSVTKTEEFYNIFENTLIKAITTNEEVVLFPKIGKFKLKSRKSYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++KI + VV FK S +K + Sbjct: 61 GRNPKTKKKIKISAKTVVTFKLSKTIKDQ 89 >gi|83310262|ref|YP_420526.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] gi|82945103|dbj|BAE49967.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 89 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++S + K+I + G S + V I D + F +F ++ +R G Sbjct: 1 MSKSAMSKAIRQAAGCSVAQADAAVEAALAAIVDGVKTEGRFSLIGFGSFSKSERPARQG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 RN +T + + I + F S+ LKK + Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89 >gi|126667926|ref|ZP_01738891.1| integration host factor subunit alpha [Marinobacter sp. ELB17] gi|126627586|gb|EAZ98218.1| integration host factor subunit alpha [Marinobacter sp. ELB17] Length = 85 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 S+ E GL+++++ V F+EI + + E +K+S F F ++ K R G Sbjct: 19 SLYDELGLNKREAKEIVGAFFDEIRGALSQNEQVKLSGFGNFDLRDKKERPG 70 >gi|255009411|ref|ZP_05281537.1| putative integration host factor IHF alpha subunit [Bacteroides fragilis 3_1_12] gi|313147170|ref|ZP_07809363.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135937|gb|EFR53297.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 467 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T +LV + G+ +KD+ FV F I + + +KI TF + Sbjct: 1 MNERLTIQNLVDLLVSRHGVPQKDADVFVREFFLLIEQALENDQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +KI+ + F L+ I Sbjct: 61 SRESVNINTGERIKIEGHTKISFTPDPSLRDIIN 94 >gi|42527215|ref|NP_972313.1| HU family DNA-binding protein [Treponema denticola ATCC 35405] gi|41817639|gb|AAS12224.1| DNA-binding protein, HU family [Treponema denticola ATCC 35405] gi|325474261|gb|EGC77449.1| HU family DNA-binding protein [Treponema denticola F0402] Length = 106 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%) Query: 1 MSKTITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M + ++ D++ S+ + + K +E+ +G ++I +F Sbjct: 1 MKQKRSKIDIIDSVYRNNPQYQLKQINAIANLFLDELSVLLQQGIPVEIRGLGSFDFAVL 60 Query: 60 GSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R RN +T + V R V FK LK+ + Sbjct: 61 HGRKNARNPKTGEAVLTADRCKVRFKPGKELKEALHK 97 >gi|39938549|ref|NP_950315.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721658|dbj|BAD04148.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63 +T+ +L+K ++ S + F N + + E + + F +K + + + Sbjct: 1 MTKKELIKKTAEVNKTSISKTEEFYHIFENTLIKAITTNEEVVLSPQIGKFQLKPRKAYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++KI + VV FK S +K + Sbjct: 61 GRNPKTKKKLKIPAKTVVAFKLSKSIKDK 89 >gi|167973131|ref|ZP_02555408.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167974791|ref|ZP_02557068.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167976046|ref|ZP_02558323.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167988544|ref|ZP_02570215.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168361961|ref|ZP_02695140.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867588|ref|ZP_03079590.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273620|ref|ZP_03206155.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554305|ref|YP_002284683.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550891|ref|ZP_03771840.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551578|ref|ZP_03772524.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903493|gb|EDT49782.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209058|gb|EDU06101.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018798|gb|EDU56838.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997726|gb|EDU66823.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659567|gb|EDX52947.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660645|gb|EDX53900.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249648|gb|EDY74429.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541806|gb|ACI60035.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379393|gb|EEH01758.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380045|gb|EEH02407.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 131 Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 41/95 (43%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K TR ++ +SK + +K + F+ T + R + ++ + F V + R Sbjct: 6 KAKTRVQMIDELSKMLNIDKKQTKTFMDTYEAFLILELSRAKEVRFGNIGKFKVTVRAER 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 G N +T + V I + + F + +K+ I + Sbjct: 66 KGINPKTGETVIIPEKTIPKFTFTKGIKEIINAGI 100 >gi|296532061|ref|ZP_06894838.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] gi|296267623|gb|EFH13471.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957] Length = 103 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ L +I ++ + + I V+ I F F V++ R Sbjct: 1 MSKKFLADTIQNSIEITGVGANALAGDIIEAIKAEIVKTGRFTIPDFGAFIVRETPKRTA 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKR 92 N +T ++V++ V FK S L++ Sbjct: 61 MNPRTGEKVQVKANATVRFKPSPALREA 88 >gi|242309055|ref|ZP_04808210.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524479|gb|EEQ64345.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 96 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSR 62 + +S+ V + + ++K++ + ++ I + + ++++ F F + + Sbjct: 1 MNKSEFVDLVKQVGEYETKKEAEKAISAFVAAIEKALSKKDGSVELVGFGKFETVLQKGK 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G TN++ K + V FKA LK + + Sbjct: 61 EGTVPGTNKKYKTKDKFVPKFKAGKGLKDAVAAAKK 96 >gi|313681742|ref|YP_004059480.1| histone family protein DNA-binding protein [Sulfuricurvum kujiense DSM 16994] gi|313154602|gb|ADR33280.1| histone family protein DNA-binding protein [Sulfuricurvum kujiense DSM 16994] Length = 94 Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + ++ V+ + K ++ ++ + + + V E + + F +F + + Sbjct: 1 MNKAQFVELVQKSGSYKTKVEAETAIKAFTEAVTAALVAKEEVSLVGFGSFTSTLQKGKS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G+ T++ + V FK LK + Sbjct: 61 GKVPGTSKTYSTKDKMVPKFKPGKSLKDSVE 91 >gi|304382714|ref|ZP_07365206.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304336165|gb|EFM02409.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 338 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T DL K++ ++ L KD+ F+ L + + +KI TF V + R Sbjct: 2 MTIKDLAKALVEKHDLREKDAEEFIDLLIEILYEGLRTDRLVKIKGLGTFKVMEVKERES 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ T + V ID + F + ++ + Sbjct: 62 ISVNTGERVVIDGHDRITFTPDATMRDLVNK 92 >gi|212693203|ref|ZP_03301331.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855] gi|212664308|gb|EEB24880.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855] Length = 59 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G I I F TF VK+K R+ N T Q + I P+ V+ +K S LK++ Sbjct: 1 MTQELQDGNNIVIQGFGTFEVKKKLERISINPATQQRMLIPPKLVLTYKPSVTLKEK 57 >gi|209884160|ref|YP_002288017.1| histone family protein DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209872356|gb|ACI92152.1| histone family protein DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 99 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S L++ I++ LS++D + +L + + FA F V +K Sbjct: 1 MATQMTKSQLIEKIAETNELSKRDVKGVLESLATLGYKELKKNGVFLVPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R++V + K + Sbjct: 61 ATKARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99 >gi|253565662|ref|ZP_04843117.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945941|gb|EES86348.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 483 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DLV+ + +S++D+ FV F I + + +KI TF + Sbjct: 1 MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +KI+ + F L+ I Sbjct: 61 SRESVNVNTGERIKIEEHTKISFTPDPSLRDIIN 94 >gi|149921263|ref|ZP_01909719.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1] gi|149817923|gb|EDM77385.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1] Length = 241 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 11/102 (10%) Query: 5 ITRSDLVKSISKEFGL----SRKDSTRFVTTLFNEICDSAVRGE-------AIKISSFAT 53 +T+++L+ I++ L ++K + + F+E+ VR F T Sbjct: 1 MTKAELIDRIARNRDLPPEVTKKVIAQILDLAFSELSTYFVRTRLTRSSTPRFTFPKFGT 60 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + K + R G N +T + + I+ + FK S+ LK+ + + Sbjct: 61 WTKKTRSGRRGVNPRTLEPMDIEACDTIDFKPSAELKRLLNE 102 >gi|83319548|ref|YP_424760.1| DNA-binding protein HU [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283434|gb|ABC01366.1| DNA-binding protein HU [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 208 Score = 71.5 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T+ L++ + ++ +++ F + G+ + ++ F F +K + Sbjct: 115 VTKGMLLEELYEDPEFVEMTKVSIKTIFDKAFIVASKNLAAGDHVVLAKFGKFETIEKEA 174 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ N T +E+++ +VV FK S +K+++ Sbjct: 175 QMKMNPSTQEEIEVPAHKVVKFKLSKSIKEKMNK 208 >gi|197294200|ref|YP_001798741.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|197294218|ref|YP_001798759.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|197294452|ref|YP_001798993.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853527|emb|CAM11377.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853545|emb|CAM11405.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171853779|emb|CAM11711.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] Length = 105 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRVGRNLQT 69 +K+++ S + F + N + ++ E + I F +K + + GRN QT Sbjct: 16 IKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 +++KI + VV FK S LK + + Sbjct: 76 GKKLKIPAKTVVNFKLSKTLKDEVKN 101 >gi|325269257|ref|ZP_08135876.1| putative integration host factor IHF alpha subunit [Prevotella multiformis DSM 16608] gi|324988486|gb|EGC20450.1| putative integration host factor IHF alpha subunit [Prevotella multiformis DSM 16608] Length = 420 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 7/98 (7%) Query: 1 MSKT---ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 M KT + + +++K++ LS D++ FV ++F I G +K+ TF ++ Sbjct: 1 MGKTGIQM----ITGALAKQYKLSASDASVFVDSVFAIISSELKDGRPVKVKGLGTFKIQ 56 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I + F + +K+ + Sbjct: 57 SVKPRESVNVNTGERVLIKGHDKITFTPDAAMKELVNK 94 >gi|148255421|ref|YP_001240006.1| DNA-binding protein HU [Bradyrhizobium sp. BTAi1] gi|146407594|gb|ABQ36100.1| DNA-binding protein HU [Bradyrhizobium sp. BTAi1] Length = 100 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 6/100 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +++S L++ I+ LS++D + TL + + + FA F V +K Sbjct: 1 MATQLSKSQLIEKIATTTELSKRDVKNVMETLTDVGHKELKKNGVFLVPGFAKFVVVKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T +E+ R++V + K + Sbjct: 61 AVKARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAVA 100 >gi|153839871|ref|ZP_01992538.1| integration host factor beta-subunit [Vibrio parahaemolyticus AQ3810] gi|149746604|gb|EDM57592.1| integration host factor beta-subunit [Vibrio parahaemolyticus AQ3810] Length = 89 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 5 ITRSDLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +T+S+L++ + +++ LS K+ V + + + G+ I+I F +F Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSF 51 >gi|218129617|ref|ZP_03458421.1| hypothetical protein BACEGG_01194 [Bacteroides eggerthii DSM 20697] gi|255009041|ref|ZP_05281167.1| histone-like DNA-binding protein HU-alpha [Bacteroides fragilis 3_1_12] gi|217988347|gb|EEC54670.1| hypothetical protein BACEGG_01194 [Bacteroides eggerthii DSM 20697] Length = 65 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 33 FNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + +S + G + + F +F +KQ+ + RN+ N + I V FK + Sbjct: 1 MESVRESMIAGNEVFLRGFGSFIIKQRAEKKARNISKNTTIVIPAHSVPAFKPAKTFLDA 60 Query: 93 IMDD 96 + + Sbjct: 61 VKEG 64 >gi|255018442|ref|ZP_05290568.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL F2-515] Length = 42 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 F V+++ +R GRN +T +E+ I +V FK LK+ + Sbjct: 1 NFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKEAVK 42 >gi|58698152|ref|ZP_00373074.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225629919|ref|YP_002726710.1| DNA-binding protein, HU family [Wolbachia sp. wRi] gi|225677271|ref|ZP_03788254.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|58535302|gb|EAL59379.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225590691|gb|EEH11935.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591900|gb|ACN94919.1| DNA-binding protein, HU family [Wolbachia sp. wRi] Length = 103 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 5 ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +++ D++K + S+ +++ D ++ I + I++ TF Sbjct: 1 MSKEDIIKQLKEDCSSQNIDITKSDLSKIHDAFIKIIKNELHGKGEIRLHGIGTFSTAIS 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 + RN Q+ + + + + V FKAS L + + + Sbjct: 61 QEKQCRNPQSGEIMTVPKKTRVKFKASQTLLSILNEKEKAA 101 >gi|197294765|ref|YP_001799306.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] gi|171854092|emb|CAM12072.1| DNA-binding protein HU [Candidatus Phytoplasma australiense] Length = 105 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKGSRVGRNLQT 69 +K+++ S + F + N + ++ E + IS F +K + + GRN QT Sbjct: 16 IKNLAVMNNTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQT 75 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMD 95 +++KI + VV FK S LK + + Sbjct: 76 GKKLKIPAKTVVNFKLSKTLKDDVKN 101 >gi|315608921|ref|ZP_07883893.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249301|gb|EFU29318.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 493 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 3/96 (3%) Query: 2 SKTITR---SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 K + R ++L + +S + +S+ ++ FV +F + D + + +KI SF TF + Sbjct: 3 GKKMNRIGITELARMLSSKHNMSQANAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGS 62 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R ++ T + + I+ R + F + L+ + Sbjct: 63 VKDRESVDVNTGERIVIEGRNKINFTPDNALRDFVN 98 >gi|253584118|ref|ZP_04861316.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834690|gb|EES63253.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Query: 5 ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L K S + +S+K + + + ++ V +K TF V +K R Sbjct: 9 MNKKELAKLYSAISQGKISQKAALEEIDIFLETMQEALVISGKVKFIKKGTFEVLKKEPR 68 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSI 88 + N T + +KI PR+VV F+AS Sbjct: 69 IVSNPSTRELMKIYPRKVVRFRASKS 94 >gi|282878888|ref|ZP_06287652.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] gi|281298887|gb|EFA91292.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310] Length = 458 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 5 ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + +DL + ++ LS+ ++ F+ L + + + +KI TF V +R Sbjct: 1 MIKITDLASVLEEQHQLSKSEAEFFIPLLVDVLTTGLKADKQVKIKGLGTFKVTSVNARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 ++ T + + I+ R + F IL+ ++ Sbjct: 61 SVDVNTGERIIIEGREKISFTPEPILRDKVN 91 >gi|265764038|ref|ZP_06092606.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256646|gb|EEZ27992.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 483 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DLV+ + +S++D+ FV F I + + +KI TF + Sbjct: 1 MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +KI+ + F L+ I Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94 >gi|167763122|ref|ZP_02435249.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC 43183] gi|167699462|gb|EDS16041.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC 43183] Length = 59 Score = 70.3 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G I I F TF VK+K R+ N T Q + + P+ V+ +K S++LK + Sbjct: 1 MTRQLEEGNMISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57 >gi|301163423|emb|CBW22974.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 483 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DLV+ + +S++D+ FV F I + + +KI TF + Sbjct: 1 MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +KI+ + F L+ I Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94 >gi|330995098|ref|ZP_08319015.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] gi|329576674|gb|EGG58177.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841] Length = 495 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 4/95 (4%) Query: 5 ITRSDLVKSISK----EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + L++ ++ GL +KD+ FV ++F I + + +K+ TF + Sbjct: 1 MDKKVLIQDLADGLVLRRGLPKKDADVFVRSVFEIIGEYLQTDKIVKVKGLGTFKLVTVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR ++ T + + I V F +L+ + Sbjct: 61 SRESVDVNTGERIVIKEYTKVNFTPDPVLRDAVNK 95 >gi|218131132|ref|ZP_03459936.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM 20697] gi|217986652|gb|EEC52986.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM 20697] Length = 59 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G I I F TF VK+K R+ N T Q + + P+ V+ +K S++LK + Sbjct: 1 MTRQLEEGNVISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57 >gi|58584829|ref|YP_198402.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419145|gb|AAW71160.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 103 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 5 ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +++ D++ + S++ +++ D ++ L I I++ TF Sbjct: 1 MSKEDIINKLKQACSSQDVEITKSDLSKIFDALMKIIKGKLDEEGEIRLHGIGTFSTAIS 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + RN Q + + + + V FKAS L + + Sbjct: 61 QEKQCRNPQNGEIMTVPQKTRVKFKASQTLLSILNKEKE 99 >gi|53713714|ref|YP_099706.1| putative integration host factor IHF subunit alpha [Bacteroides fragilis YCH46] gi|52216579|dbj|BAD49172.1| putative integration host factor IHF alpha subunit [Bacteroides fragilis YCH46] Length = 483 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T DLV+ + +S++D+ FV F I + + +KI TF + Sbjct: 1 MNEKLTIQDLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +KI+ + F L+ I Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94 >gi|27381286|ref|NP_772815.1| DNA-binding protein HU 1 [Bradyrhizobium japonicum USDA 110] gi|27354453|dbj|BAC51440.1| hupA [Bradyrhizobium japonicum USDA 110] Length = 100 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M +++S L++ I+ LS++D + TL + + + FA F V +K Sbjct: 1 MPAQMSKSQLIEKIATATELSKRDVKSVMETLTDVGHKELKKNGLFLVPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T +E+ R++V + K + Sbjct: 61 ATKARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAVA 100 >gi|115526040|ref|YP_782951.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] gi|115519987|gb|ABJ07971.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] Length = 99 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S L++ I+ + L++KD + TL + + FA F V +K Sbjct: 1 MATQMTKSQLIEKIATKSELAKKDVKGVIETLAEIGYKELKKNGVFLVPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R++V + K + Sbjct: 61 ATKARKGTNPFTGEAMTFKAKPARKIVRARPVKAAKDAV 99 >gi|253682948|ref|ZP_04863735.1| DNA-binding protein HU [Clostridium phage D-1873] gi|253560874|gb|EES90336.1| DNA-binding protein HU [Clostridium phage D-1873] Length = 95 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 5 ITRSDLVKSISKEFG-----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +++L+ + ++ +S+KD + + + + + TF + Sbjct: 1 MVKTELLGRMVEKLEGKEVKVSKKDMDAIYSAVLETVAEVVKEEGKLTTP-IGTFKNTTR 59 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G+RVGRN ++ +E++I + FK S +K++ Sbjct: 60 GARVGRNPRSGEEIQIAESHALTFKQSKAVKEQFNK 95 >gi|315453214|ref|YP_004073484.1| DNA-binding protein HU [Helicobacter felis ATCC 49179] gi|315132266|emb|CBY82894.1| DNA-binding protein HU homolog [Helicobacter felis ATCC 49179] Length = 101 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%) Query: 5 ITRSDLVKSISKEFGLS-RKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + + + + KE G +KD+ + I + + E++++ F F + + Sbjct: 1 MKKLEFIDLMQKEGGFKDKKDTELAFNSFIKAIEKALSQHESVELVGFGKFEAVLQKGKK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 G+ +++ + V FK ILK + + K K Sbjct: 61 GKVPGSDKTYTTKDKMVPKFKPGKILKDAVATPPKIGKKKK 101 >gi|297243580|ref|ZP_06927511.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis AMD] gi|298253945|ref|ZP_06977532.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis 5-1] gi|296888331|gb|EFH27072.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis AMD] gi|297532088|gb|EFH71063.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis 5-1] Length = 61 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 37 CDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 ++ GE +K++ + ++ R GRN +T + +KI V A S+LKK + Sbjct: 3 VEALQSGEGLKLTGLFSAERVKRAERTGRNPRTGETIKIPASYGVRISAGSLLKKAV 59 >gi|42519978|ref|NP_965893.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034834|ref|ZP_01314748.1| hypothetical protein Wendoof_01000424 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409715|gb|AAS13827.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 103 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Query: 5 ITRSDLVKSI-----SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +++ D++K + S+ +++ D ++ I + I++ TF Sbjct: 1 MSKEDIIKQLKEDCSSQNIDITKSDLSKIHDAFIKIIKNELHGKGEIRLHGIGTFSTAIS 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 + RN Q+ Q + + + V FKAS L + + + Sbjct: 61 QEKQCRNPQSGQIMTVPKKTRVKFKASQTLLSILNEKEKAA 101 >gi|329963576|ref|ZP_08301055.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328528565|gb|EGF55536.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 59 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G I I F TF VK+K R+ N T Q + + P+ V+ +K S++LK + Sbjct: 1 MTRQLEEGNVISIQGFGTFEVKKKAERISVNPTTRQRMLVPPKLVLTYKPSTLLKDK 57 >gi|330968518|gb|EGH68778.1| HU family DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 58 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 38 DSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 D G I + V ++ +R GRN T ++I ++V+ F + +L I Sbjct: 1 DQLENGVEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 58 >gi|303235570|ref|ZP_07322177.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] gi|302484017|gb|EFL47005.1| DNA-binding protein HU [Prevotella disiens FB035-09AN] Length = 408 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 5 ITRSDL---VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + ++ L +++K+ L+ K+S +FV+ LF I + + K+ TF V+ Sbjct: 1 MAKTALQLVADAVAKKHKLTIKESEKFVSQLFEVIQEGLHEDKIAKVKGLGTFKVQAVKP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I V F + +K+ + Sbjct: 61 RESINVNTGKRVLIAGHDKVSFTPDAAMKELVNK 94 >gi|71028204|ref|XP_763745.1| hypothetical protein [Theileria parva strain Muguga] gi|68350699|gb|EAN31462.1| hypothetical protein, conserved [Theileria parva] Length = 167 Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+V + + ++K+ + V + I + + F F +G R RN Sbjct: 64 KRDIVSEVGERLNKTQKEVGQVVDEFLSSIKRHLSNDAEVSLPRFGVFKNSMRGERRMRN 123 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 LQT + P V + K + ++ + Sbjct: 124 LQTGEIFTAKPVHVPTLRFYDTFKAELNHKLKTKDKRN 161 >gi|115525842|ref|YP_782753.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] gi|115519789|gb|ABJ07773.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] Length = 99 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S L++ I+ + L+++D + + + + FA F V +K Sbjct: 1 MATQLTKSQLIEKIATQTELAKRDVKGVLEAMSEIGYKELKKNGLFLVPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + + R++V + K + Sbjct: 61 ATKARKGTNPFTGEPMVFKAKPARKIVRARPVKAAKDAV 99 >gi|307564882|ref|ZP_07627407.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] gi|307346418|gb|EFN91730.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A] Length = 89 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV- 63 + +++++ + L+R + + + N I S ++GE + + FAT V RV Sbjct: 1 MKKNEILSEVIDATDLTRSQAVKAYEAIINAIKKSLIKGEDVTLRGFATLKVVHVKERVS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 G + ++ I + V KA LKK I Sbjct: 61 GLH---GKKTVIPAHKTVKIKACQELKKLINK 89 >gi|322379007|ref|ZP_08053410.1| DNA-binding protein hu [Helicobacter suis HS1] gi|322380772|ref|ZP_08054878.1| dna-binding protein hu [Helicobacter suis HS5] gi|321146776|gb|EFX41570.1| dna-binding protein hu [Helicobacter suis HS5] gi|321148499|gb|EFX42996.1| DNA-binding protein hu [Helicobacter suis HS1] Length = 105 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 39/90 (43%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++ V+ + + SRKD+ + + + E++++ F F V + + Sbjct: 1 MKKAEFVELMKEAGSFDSRKDAEFALDGFVRAVQKALSTHESVELVGFGKFEVALQKGKS 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G+ +++ + V FK +LK + Sbjct: 61 GKVPGSDKTYMTKDKMVPKFKPGKVLKDIV 90 >gi|187251516|ref|YP_001875998.1| DNA-binding protein [Elusimicrobium minutum Pei191] gi|186971676|gb|ACC98661.1| Bacterial DNA-binding protein [Elusimicrobium minutum Pei191] Length = 86 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D+V ++ L +K S + V +F I + +R + IS+F TF + + + V Sbjct: 1 MKKEDIVNRLALSL-LDKKQSKQTVEEVFAIIKEGLLRDGKVTISNFGTFKLVRTKAAVR 59 Query: 65 RNLQTNQEVKIDPRRVVVFKAS 86 N +T + V + + V FK+S Sbjct: 60 HNPKTLERVNVPAKTKVRFKSS 81 >gi|317062728|ref|ZP_07927213.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688404|gb|EFS25239.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 106 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 30/73 (41%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ + V F+ + + E + + F ++ + R N +T + + I ++V+ F Sbjct: 34 EAKKRVKVFFDTLKQVIDKDEKVIFKDWGKFEIEHREQRTYGNPRTKERIIIPAKKVLKF 93 Query: 84 KASSILKKRIMDD 96 R+ + Sbjct: 94 TVGKKFADRVKNS 106 >gi|125624460|ref|YP_001032943.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|124493268|emb|CAL98235.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071248|gb|ADJ60648.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 101 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 34/66 (51%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + + + I G + IS+F TF V+++ +R+ ++ + +++ + + + VF+ Sbjct: 3 AAKAINAFVEAITYYISEGATVHISNFGTFEVRKRAARISHDVHSREKILVGEQNIPVFR 62 Query: 85 ASSILK 90 A LK Sbjct: 63 AGKALK 68 >gi|329954833|ref|ZP_08295850.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] gi|328526937|gb|EGF53948.1| DNA-binding protein HU [Bacteroides clarus YIT 12056] Length = 59 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G I + F TF VK+K R+ N T Q + + P+ V+ +K S++LK + Sbjct: 1 MTRQLEDGNTISVQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57 >gi|119490325|ref|ZP_01622803.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] gi|119453984|gb|EAW35138.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] Length = 176 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I K G S + + I G +KI F F+ K+ R RN +T + + Sbjct: 6 IQKSTGFSEGIVNAVIDSFIKFIQLELRSGNEVKIPDFGVFYSKELPERQSRNPRTGESI 65 Query: 74 KIDPRRVVVFK 84 P+ F+ Sbjct: 66 IAKPKTKPKFR 76 >gi|257468465|ref|ZP_05632559.1| histone family protein DNA-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 97 Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 30/73 (41%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ + V F+ + + E + + F ++ + R N +T + + I ++V+ F Sbjct: 25 EAKKRVKVFFDTLKQVIDKDEKVIFKDWGKFEIEHREQRTYGNPRTKERIIIPAKKVLKF 84 Query: 84 KASSILKKRIMDD 96 R+ + Sbjct: 85 TVGKKFADRVKNS 97 >gi|330938918|gb|EGH42423.1| HU family DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 68 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L+ I++ + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPART 61 Query: 64 GRNLQTN 70 GRN T Sbjct: 62 GRNPSTG 68 >gi|284931152|gb|ADC31090.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. F] Length = 123 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++ K I++ G+S K + + +++ TF V R+ Sbjct: 2 LTKSEICKIIAECTGVSPKLVKACFQVYSDLVKKEIKSQGQVRLPELGTFRVTIGRERIS 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 N T + +I P+ V F+A+ LK+ + ++ + ++DD Sbjct: 62 VNPITGAQTRIPPKPKVKFRAAKPLKE-VTATIKWKYVSEDD 102 >gi|90425234|ref|YP_533604.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB18] gi|90107248|gb|ABD89285.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB18] Length = 99 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 6/99 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 M+ +T+S L++ I+ + L++KD + + + + FA F V +K Sbjct: 1 MATQMTKSQLIEKIATQSELAKKDVKGVLEAMTEIGYKELKKNGVFLVPGFAKFVVIKKP 60 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N + + R++V + K + Sbjct: 61 ATKARKGTNPFNGEPMVFKAKPARKIVRARPVKAAKDSV 99 >gi|298385675|ref|ZP_06995233.1| integration host factor IHF alpha subunit [Bacteroides sp. 1_1_14] gi|298261816|gb|EFI04682.1| integration host factor IHF alpha subunit [Bacteroides sp. 1_1_14] Length = 466 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 +++KD+ FV F I + + +KI TF + SR N+ T + +I Sbjct: 1 MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVNVNTGERFQIKGHT 60 Query: 80 VVVFKASSILKKRIMD 95 V F + L+ I Sbjct: 61 KVSFTPDTNLRDTINK 76 >gi|31544347|ref|NP_852925.1| histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. R(low)] gi|31541191|gb|AAP56493.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. R(low)] gi|284930387|gb|ADC30326.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. R(high)] Length = 118 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+S++ K I++ G+S K + + +++ TF V R+ Sbjct: 2 LTKSEICKIIAECTGVSPKLVKACFQVYSDLVKKEIKSQGQVRLPELGTFRVTIGRERIS 61 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDD 106 N T + +I P+ V F+A+ LK+ + ++ + ++DD Sbjct: 62 VNPITGAQTRIPPKPKVKFRAAKPLKE-VTATIKWKYVSEDD 102 >gi|119494127|ref|ZP_01624637.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] gi|119452166|gb|EAW33370.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106] Length = 177 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 I G S V +L + G +KI F F+ K+ GSR RN +T + + Sbjct: 6 IQNSTGFSEATVQAVVDSLIKFVQLELRSGNEVKIPDFGVFYPKELGSRPSRNPRTGESI 65 Query: 74 KIDPRRVVVFK 84 P+ F+ Sbjct: 66 IAKPKTKPKFR 76 >gi|253581429|ref|ZP_04858654.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836499|gb|EES65034.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 30/73 (41%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ + V F+ + E + + F ++ + R+ N +T + + I +RV+ F Sbjct: 25 EAKKRVKVFFDTLKQVIDENEKVIFKDWGKFEIEHREQRIYGNPKTKERIVIPAKRVLKF 84 Query: 84 KASSILKKRIMDD 96 R+ + Sbjct: 85 TVGKKFADRVKNS 97 >gi|237752734|ref|ZP_04583214.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376223|gb|EEO26314.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 98 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S+ V + + ++KD+ + + + + + E+I++ F F + + Sbjct: 1 MNKSEFVDLVKEVGEFETKKDAEKAIGAFTAAVEKALAKKESIELVGFGKFETVLQKGKE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 G T ++ K + V FKA L Sbjct: 61 GTVPGTTKKYKTQDKFVPKFKAGKGL 86 >gi|302336640|ref|YP_003801846.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301633825|gb|ADK79252.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 292 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 T+ + I+ L++ R + F+ + + GE + + S + + R Sbjct: 188 TKDRMAAYIAGRNDLTQLQVRRILDDFFSVVESGIMLGERVSLGSLGKIGYRVRPPSKAR 247 Query: 66 N---LQTNQEVKIDP---RRVVVFKASSILKKR 92 T +E+ I R VV F S LK+R Sbjct: 248 IITVPATGEEMTIPAKPSRAVVKFSPSGRLKER 280 >gi|332879556|ref|ZP_08447251.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682522|gb|EGJ55424.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 494 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 4/95 (4%) Query: 5 ITRSDLVKSISK----EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + L++ ++ GL +KD+ FV ++F I + + +K+ TF + Sbjct: 1 MDKKVLIQDLADGLVLRRGLPKKDADVFVRSVFEIIGEYLQTDKIVKVKGLGTFKLVTVD 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 SR ++ T + + I + F +L+ + Sbjct: 61 SRESVDVNTGERIVIKEYTKINFTPDPVLRDAVNK 95 >gi|288927532|ref|ZP_06421379.1| integration host factor IHF alpha subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288330366|gb|EFC68950.1| integration host factor IHF alpha subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 638 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 4/99 (4%) Query: 1 MSKTITRS----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 M + +L ++ + LS K++ FV T+F+ + + +K+ TF V Sbjct: 1 MEVKMNNRVGIRELAMALVNKNKLSLKEAENFVATMFDTLNVGLNDDKQVKLKGLGTFKV 60 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +R ++ T + + ID R + F S +K + Sbjct: 61 MSVSARKSVDVNTGEPIIIDGRDKISFTPDSTMKDLVNK 99 >gi|317064750|ref|ZP_07929235.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690426|gb|EFS27261.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 1 MSKTITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 M + + +L + + L S+ + + F + ++ V +K TF + Sbjct: 1 MVIQMNKRELT-KLYIKLSLCPISQNKAKEEIEEFFETLKEAIVIDGKVKFPKIGTFEIL 59 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 + R N T + + I P++++ F+AS +K Sbjct: 60 TRQPRKVSNPVTRELMTIYPKKIIKFRASKKIK 92 >gi|294673497|ref|YP_003574113.1| HU family DNA-binding protein [Prevotella ruminicola 23] gi|294472549|gb|ADE81938.1| DNA-binding protein, HU family/extensin domain protein [Prevotella ruminicola 23] Length = 472 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 41/87 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L + + ++R+D++ FV+ +F+ + + +K+ TF + R N+ Sbjct: 8 ELANVLVERRKMNRRDASLFVSAMFDIVQQRLETDKLVKVKGLGTFKIIDVEDRESVNVN 67 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T + V I+ + F ++LK+ + Sbjct: 68 TGERVLIEGHGKITFVPDALLKELVNK 94 >gi|300727619|ref|ZP_07061008.1| DNA-binding protein HU [Prevotella bryantii B14] gi|299775139|gb|EFI71742.1| DNA-binding protein HU [Prevotella bryantii B14] Length = 521 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 40/87 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L K + LS D+ +FV +F+ + + + +KI F TF V R ++ Sbjct: 8 ELAKVLVNTHKLSVDDAEQFVRLMFDTVNEGLQEDKQVKIKGFGTFKVLSVKDRESVDVN 67 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T + + I+ R + F +I+K + Sbjct: 68 TGERIIIEGRDKISFTPDAIVKDIVNK 94 >gi|530471|emb|CAA83809.1| DNA-bind. protein HU [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 90 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 10 LVKSISKE---FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 L++ + ++ +++ F + G+ + ++ F F +K +++ N Sbjct: 2 LLEELYEDPEFVEMTKVSIKTIFDKAFIVASKNLAAGDHVVLAKFGKFETIEKEAQMKMN 61 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 T +E+++ +VV FK S +K+++ Sbjct: 62 PSTQEEIEVPAHKVVKFKLSKSIKEKMNK 90 >gi|253583307|ref|ZP_04860505.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251833879|gb|EES62442.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 89 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Query: 5 ITRSDLV---KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L +IS + +S+K + + + ++ ++ +++ + F + ++ Sbjct: 1 MNKRELARIYNTIS-QGKISQKAALEEINIFTQTLQEALMKYDSVTFVNIGIFEILERKP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R+ N T + +KI P++VV F+AS L Sbjct: 60 RLVSNPSTREIMKIYPKKVVRFRASKNL 87 >gi|161789239|ref|YP_001595601.1| histone-like DNA-binding protein [Vibrio sp. 23023] gi|161761364|gb|ABX77010.1| Histone-like DNA-binding protein [Vibrio sp. 23023] Length = 98 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ IS ++ L K +F+E+ + + E+I+I F +K + ++ Sbjct: 1 MNKVELIARISSKYDLDEKRVRVLADVIFDEMAKALLDRESIEIPELGDFWIKTRPEKLS 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N + Q + I + V FK L+K + Sbjct: 61 EN-RRGQVITIREKHAVRFKPVIQLRKALN 89 >gi|254511061|ref|ZP_05123128.1| DNA-binding protein HU [Rhodobacteraceae bacterium KLH11] gi|221534772|gb|EEE37760.1| DNA-binding protein HU [Rhodobacteraceae bacterium KLH11] Length = 78 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 G +K + + + I G A+ + + +++ R+ RN T ++ K + Sbjct: 1 MGTDKKSANAALEAMTGLITREVSAGGAVTLPGVGKIYCRERPERMVRNPATGEQFKKEA 60 Query: 78 RRVVVFKASSILKKRIMD 95 +VV + LK + Sbjct: 61 DKVVKMTIAKALKDSVNG 78 >gi|261879548|ref|ZP_06005975.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333774|gb|EFA44560.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 494 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Query: 5 ITR---SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L + + +FGL R S FV +F+ + D KI TF + + Sbjct: 1 MNKIGNKELARLLVDKFGLDRAASEDFVRLIFDVVNDGLKDDSQAKIKGLGTFKITRVAP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R ++ T + + I+ R + F A ++ ++ Sbjct: 61 RKSVDVNTGEPIIIEGRDKMSFTADVSMRNQVN 93 >gi|297182787|gb|ADI18941.1| hypothetical protein [uncultured SAR11 cluster bacterium HF0010_09O16] Length = 97 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 7 RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +S+++K + K K ++ V T+ EI +S R E+ +I F + K + + R Sbjct: 5 KSEIIKQLKKSYPNFENKILSKIVDTILKEIKESLKRNESCEIRKFGRWSTKIQKPSIRR 64 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N ++ Q+V I+ ++VV +K S L +++ +D Sbjct: 65 NPKSGQKVHINAKKVVRWKMSKELFRKLNNDEE 97 >gi|253578052|ref|ZP_04855324.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850370|gb|EES78328.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 97 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 40/97 (41%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +TRS++++ S+ S + + V T+ I + + + + F F ++ + G Sbjct: 1 MTRSEMIRRYSEIQCCSYEMAADAVDTVVTLISEGLEQDGKVSLKYFGRFEIRPFKAHRG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 + + ++I + F +K ++ +K Sbjct: 61 YDFSKGESIEIPAHNTIRFTPCEAWRKEVLRKEIVKK 97 >gi|315185584|gb|EFU19353.1| histone family protein DNA-binding protein [Spirochaeta thermophila DSM 6578] Length = 291 Score = 66.9 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK---QKGSRVGRN 66 + +S+ GL +K + + + GE +++ + +F + + +RV R+ Sbjct: 188 ITSYLSRRHGLPQKAVKELLADYLTLVEAGVLMGERVRLGNLGSFSLTVRPPRKARVMRH 247 Query: 67 LQTNQEVKIDPR---RVVVFKASSILKKR 92 T E+ + + V FK S K++ Sbjct: 248 PATGGEILVPAQPAIAVPRFKPSRSFKEK 276 >gi|193214623|ref|YP_001995822.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] gi|193088100|gb|ACF13375.1| histone family protein DNA-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 115 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 5/100 (5%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVK- 57 S+T+TR DL+K ++K S FV + + I++ F VK Sbjct: 13 SQTLTRRDLIKLVAKRTQKSEASVAEFVDVTIESLSKLIRNADDELRIELRGLGVFEVKF 72 Query: 58 QKGSRVGRNLQTNQEVKIDP-RRVVVFKASSILKKRIMDD 96 K R+ +T + + RR V F+ S ++K+ + + Sbjct: 73 MKNEATVRDPRTGTIIDYEGRRRKVHFRPSKLIKRALQKE 112 >gi|160937344|ref|ZP_02084706.1| hypothetical protein CLOBOL_02234 [Clostridium bolteae ATCC BAA-613] gi|158439908|gb|EDP17657.1| hypothetical protein CLOBOL_02234 [Clostridium bolteae ATCC BAA-613] Length = 94 Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 44/92 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L I++ G R+++T+ + L + D+ G + ++ V++ ++ G Sbjct: 1 MIKKKLAIQIAQRIGNGREETTKLLDVLCEVLGDTLDAGVFVHLTGLGRLTVREYPAQKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + +T + + ++ VFKA+ LK + + Sbjct: 61 FDPRTRGFINMAAKKSPVFKANKSLKGKSNEA 92 >gi|257470543|ref|ZP_05634633.1| hypothetical protein FulcA4_14451 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEFGL---SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L + + L S+ + + F + ++ V +K TF + + Sbjct: 1 MNKRELT-KLYIKLSLCPISQNKAKEEIEEFFETLKEAIVIDGKVKFPKIGTFEILTRQP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R N T + + I P++++ F+AS +K Sbjct: 60 RKVSNPVTRELMTIYPKKIIKFRASKKIK 88 >gi|212213043|ref|YP_002303979.1| DNA-binding protein [Coxiella burnetii CbuG_Q212] gi|212011453|gb|ACJ18834.1| bacterial DNA-binding protein [Coxiella burnetii CbuG_Q212] Length = 105 Score = 66.9 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK--- 59 +T+S ++ +++ L++K T L + +G + VK+K Sbjct: 8 MTKSQILAHLAESTELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPAT 67 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + + R VV + LK+ + Sbjct: 68 KARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMVE 105 >gi|253583929|ref|ZP_04861127.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834501|gb|EES63064.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 95 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Query: 5 ITRSDLV---KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L +IS + +S+K + + + ++ ++ +++ + F + ++ Sbjct: 6 MNKRELARIYNTIS-QGKISQKAALEEIDIFTQTLQEALMKYDSVTFVNIGIFEILERKP 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASS 87 R+ N T + +KI P++VV F+AS Sbjct: 65 RLVSNPSTREIMKIYPKKVVRFRASK 90 >gi|307718393|ref|YP_003873925.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM 6192] gi|306532118|gb|ADN01652.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM 6192] Length = 291 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK---QKGSRVGRN 66 + +S+ L RK + + + GE +++ + +F + + +RV R+ Sbjct: 188 ITSYLSRRHDLPRKVVKELLADYLTLVEAGVLMGERVRLGTLGSFSLTVRPPRKARVMRH 247 Query: 67 LQTNQEVKIDPR---RVVVFKASSILKKR 92 T E+ + R V FK S K++ Sbjct: 248 PATGGEILVPARPALAVPRFKPSRSFKEK 276 >gi|253582857|ref|ZP_04860076.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835291|gb|EES63833.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 90 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 5 ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L K SK + +S+K + + + ++ ++ +++ + F + ++ R Sbjct: 1 MNKRELAKIYSKISQGKVSQKAALEEINIFTQTLQEALMKYDSVTFVNIGVFEILERKPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASS 87 + N T + +KI P++VV F+AS Sbjct: 61 LVSNPSTREIMKIYPKKVVRFRASK 85 >gi|329942725|ref|ZP_08291504.1| bacterial DNA-binding family protein [Chlamydophila psittaci Cal10] gi|328814985|gb|EGF84974.1| bacterial DNA-binding family protein [Chlamydophila psittaci Cal10] Length = 66 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQ-EVKIDPRRVVVFKASSILKKRIM 94 + D+ V+G+ ++ F V ++ +VGRN + + I RR V F +K+ I Sbjct: 1 MTDALVKGDRLEFRDFGVLQVVERKPKVGRNPKNATVPIHIPARRAVKFTPGKRMKRLIE 60 >gi|60681985|ref|YP_212129.1| hypothetical protein BF2505 [Bacteroides fragilis NCTC 9343] gi|60493419|emb|CAH08205.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 483 Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 42/94 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T LV+ + +S++D+ FV F I + + +KI TF + Sbjct: 1 MNEKLTIQYLVELLVNRHEVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVN 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR N+ T + +KI+ + F L+ I Sbjct: 61 SRESVNVNTGERIKIEGHTKISFTPDPSLRDIIN 94 >gi|325973341|ref|YP_004250405.1| DNA-binding protein [Mycoplasma suis str. Illinois] gi|323651943|gb|ADX98025.1| DNA-binding protein [Mycoplasma suis str. Illinois] Length = 99 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ +L+ IS E GL++ + + + + ++ R G Sbjct: 1 MTKLELLVKISGETGLTKDQIDSVLKAYQAITIAEMKEQGEVNVLEIGKIKISRRPERKG 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 N T + + I V F S LK+ + Sbjct: 61 VNFMTKEPMVIPAANVAKFSFSKKLKEAASES 92 >gi|253584284|ref|ZP_04861482.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834856|gb|EES63419.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 94 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 5 ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L K ISK ++ K + + + ++ + +K TF V +K + Sbjct: 6 MNKKELAKIYSKISKNM-INVKRAIEEIDVFLETVQEALLVDGKVKFIKRGTFEVLKKKA 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSIL 89 R+ N T + +KI P++ + FK S L Sbjct: 65 RIISNPSTRELMKIYPKKTIKFKISKEL 92 >gi|254448116|ref|ZP_05061579.1| bacterial DNA-binding protein [gamma proteobacterium HTCC5015] gi|198262242|gb|EDY86524.1| bacterial DNA-binding protein [gamma proteobacterium HTCC5015] Length = 116 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFH---VKQKG 60 T + +V I+ + GL++ D + +L I + A F V ++ Sbjct: 11 TTAQVVSYIADQTGLTKNDVKAVLDSLEEIITLHLKKKGVQKFNFLGMAQFKIDRVARRA 70 Query: 61 SRVGRNLQTNQEVKIDPR 78 +R GRN T +E+ I + Sbjct: 71 ARPGRNPATGEEITIPAK 88 >gi|67923415|ref|ZP_00516894.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii WH 8501] gi|67854750|gb|EAM50030.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii WH 8501] Length = 54 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 27/50 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + DLV I+ + L++K++ + +L I ++ G+ + + F TF Sbjct: 1 MNKEDLVNMIAAKTRLTKKETIHILDSLTETIMETVASGDKVVLVGFGTF 50 >gi|50365246|ref|YP_053671.1| histone-like DNA-binding protein [Mesoplasma florum L1] gi|50363802|gb|AAT75787.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1] Length = 271 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 7 RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + LV+ +++ +K V LF + + + GE + I +F +K + Sbjct: 159 KKYLVERLTEMYPDYKKKTIDEIVKNLFQNVENHLISGEEVIIENFGKLIKVEKPVKQAI 218 Query: 66 NLQTNQEVKIDPRRVVVFKASSILK 90 N + V++ ++ FK S LK Sbjct: 219 NPSNGEIVEVPATTIIKFKPSRNLK 243 >gi|253583855|ref|ZP_04861053.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834427|gb|EES62990.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 89 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 5 ITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L K + + +S K + + + ++ V +K TF V +K R Sbjct: 1 MNKMELAKLYIKASKSEISIKKAVEEIDIFLKTMQEALVISGKVKFMKKGTFEVLKKEPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + N T + +KI PRR V F+AS + + Sbjct: 61 IISNPSTRELMKIYPRRTVKFRASKSIME 89 >gi|160937268|ref|ZP_02084630.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC BAA-613] gi|158439832|gb|EDP17581.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC BAA-613] Length = 51 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 52 ATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRG 99 TF V ++ R RN +T + V+I PRRV VF+A SILK+ ++ +G Sbjct: 4 GTFAVAERKGRQRRNPRTGEVVEIKPRRVPVFRAGSILKREVIQGNQG 51 >gi|289829537|ref|ZP_06547133.1| integration host factor subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 50 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 28/48 (58%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51 +T++++ + + + GLS++D+ V F EI + GE +K+S F Sbjct: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGF 49 >gi|189465618|ref|ZP_03014403.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM 17393] gi|189437892|gb|EDV06877.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM 17393] Length = 59 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G + + SF TF VK+K R+ N T + + P+ V+ ++ S+ LK + Sbjct: 1 MTQQLQEGNIVSVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTTLKDK 57 >gi|297618190|ref|YP_003703349.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297146027|gb|ADI02784.1| histone family protein DNA-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 100 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Query: 5 ITRS-----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + R +LVK I+ + GL +KD + + D+ G +++ F TF +++ Sbjct: 1 MNRKAIGGDELVKRIADKTGLLQKDVRAVLRAFEQVVKDALTDGYEVRLVGFGTFRTRRR 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +R G+ + +I V VF LK+ + + Sbjct: 61 AARKGQI--GGRAYEIPETVVPVFAPGKGLKEAVGGETA 97 >gi|224540005|ref|ZP_03680544.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus DSM 14838] gi|224518372|gb|EEF87477.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus DSM 14838] Length = 59 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + G AI + SF TF VK+K R+ N T + + P+ V+ ++ S+ LK + Sbjct: 1 MTQQLQEGNAISVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTALKDK 57 >gi|257470535|ref|ZP_05634625.1| HU family DNA-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317064742|ref|ZP_07929227.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690418|gb|EFS27253.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + D I ++ ++ K++ + + L I + + + F V K + Sbjct: 1 MNKGDFT-KIYRKMDRTKVSLKEAAKDINVLLETIKEGLKISGKVSFAKRGIFEVVDKKA 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R N T + ++I PRR V F+ S LK Sbjct: 60 RNIANPSTWEIMRIKPRRTVRFRTSKPLK 88 >gi|289806659|ref|ZP_06537288.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 73 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +T+S+L++ ++ ++ + K V + + + +GE I+I F +F Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSF 51 >gi|220936085|ref|YP_002514984.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. HL-EbGR7] gi|219997395|gb|ACL73997.1| histone family protein DNA-binding protein [Thioalkalivibrio sp. HL-EbGR7] Length = 118 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 8/95 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQK---GS 61 +++++ I+ + GLS+KD + +L I S RG + V +K + Sbjct: 24 KTEILNHIATQTGLSKKDVGAVMDSLQGLIEKSVKPRGVGMFTLPGLLKIKVVKKPATKA 83 Query: 62 RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 R GRN T +E+ R+VV LK I Sbjct: 84 RKGRNPATGEEMIFKAKPARKVVKVLPLKNLKDMI 118 >gi|225851318|ref|YP_002731552.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] gi|225646385|gb|ACO04571.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Persephonella marina EX-H1] Length = 92 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T +L +SK + + + + V +F+ + +RG+ +++ F F+ K + SR Sbjct: 1 MTYKELKIQVSKNAQVPVEVADKVVEEVFHTLKSVMLRGDRLQVPGFGVFYTKIRSSRKV 60 Query: 65 RNLQT-NQEVKIDPRRVVVFKASSILKKRIMDDM 97 +T + ++ +RV VF + LKK I + Sbjct: 61 ---KTHGEIKQLPSKRVPVFAPAKALKKEIESNT 91 >gi|281419889|ref|ZP_06250888.1| putative integration host factor IHF alpha subunit [Prevotella copri DSM 18205] gi|281406016|gb|EFB36696.1| putative integration host factor IHF alpha subunit [Prevotella copri DSM 18205] Length = 479 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV 73 ++ + GLS+ ++ F+ +F+ + +KI TF V+ R N+ T + Sbjct: 13 LADKSGLSQVEAELFIRKMFDVCNQGLDADKQVKIKWLGTFKVQATKDRESINVNTGERF 72 Query: 74 KIDPRRVVVFKASSILKKRIMD 95 I+ R + F +ILK+ + Sbjct: 73 TIEGRDKLTFTPDNILKEIVNK 94 >gi|154707338|ref|YP_001424941.1| DNA-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161830030|ref|YP_001596403.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331] gi|215918971|ref|NP_819508.2| DNA-binding protein BpH2 [Coxiella burnetii RSA 493] gi|154356624|gb|ABS78086.1| bacterial DNA-binding protein [Coxiella burnetii Dugway 5J108-111] gi|161761897|gb|ABX77539.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331] gi|206583856|gb|AAO90022.2| bacterial DNA-binding protein [Coxiella burnetii RSA 493] Length = 129 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK--- 59 +T+S ++ +++ L++K T L + +G + VK+K Sbjct: 32 MTKSQILAHLAESTELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPAT 91 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + + R VV + LK+ + Sbjct: 92 KARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMVE 129 >gi|88798564|ref|ZP_01114148.1| DNA-binding protein HU, putative [Reinekea sp. MED297] gi|88778664|gb|EAR09855.1| DNA-binding protein HU, putative [Reinekea sp. MED297] Length = 109 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 10/95 (10%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQ---K 59 T++ ++ I++ LS+K + L + I + GE + + + + Sbjct: 13 TKTQILTEIAENTELSKKQVQSVLDELSDVIERHIKKRACGEFV-LPGLMKIQTVKKPAR 71 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T +E+ I V + LK Sbjct: 72 KARPGVNPFTGEEIMIAAKPASTTVKVRPLKKLKD 106 >gi|313665705|ref|YP_004047576.1| DNA-binding protein HU [Mycoplasma leachii PG50] gi|312950036|gb|ADR24632.1| DNA-binding protein HU [Mycoplasma leachii PG50] Length = 358 Score = 64.5 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 +++ F + G+ I ++ F F +K + + N T +++++ Sbjct: 281 VEMTKVSIKTIFDKAFIVASKNLAAGDHIVLAKFGKFETIEKEAEMKINPLTQEQIEVPA 340 Query: 78 RRVVVFKASSILKKRIMD 95 ++V FK S +K+++ Sbjct: 341 HKIVKFKLSKSIKEKMNK 358 >gi|303257527|ref|ZP_07343539.1| putative integration host factor subunit alpha (IHF-alpha) [Burkholderiales bacterium 1_1_47] gi|331000208|ref|ZP_08323892.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859] gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha) [Burkholderiales bacterium 1_1_47] gi|329572374|gb|EGG54027.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859] Length = 118 Score = 64.5 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 45/98 (45%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 T+ RS L + + +E G SR+ S FVT F I D GE +K+++ F + + + Sbjct: 20 NTMNRSTLEEVLFEELGFSREMSRVFVTQFFQTISDVLATGEEVKLTTLGRFEICGRAYK 79 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGR 100 + + + + R V F S L I ++R + Sbjct: 80 MFFDPEAKEWFDAPTRLDVYFHPSKKLTDFIDYNLRQK 117 >gi|299140823|ref|ZP_07033961.1| DNA-binding protein HU [Prevotella oris C735] gi|298577789|gb|EFI49657.1| DNA-binding protein HU [Prevotella oris C735] Length = 423 Score = 64.5 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T D+ + + + GL D+ F+ + + I + R +KI TF + Sbjct: 13 MAMT-NMKDIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVS 71 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR ++ T + + I+ R + F + +K+ + Sbjct: 72 SRESVDVNTGERIVIEGRDKISFTPDNAMKELVN 105 >gi|257469718|ref|ZP_05633810.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans ATCC 49185] Length = 90 Score = 64.5 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +S L + +E +S+ + + + + ++ + +K ATF V ++ R Sbjct: 1 MNKSQLAELYRRETDGEISKLKALKEIDDFMETLNEALMTDGKVKFHEKATFEVLERKPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T + ++I P++ V FK S I+K Sbjct: 61 VISNPATRERLEIFPKKTVKFKLSKIVK 88 >gi|83816472|ref|YP_445195.1| DNA-binding protein HU [Salinibacter ruber DSM 13855] gi|294507079|ref|YP_003571137.1| DNA-binding protein HU [Salinibacter ruber M8] gi|83757866|gb|ABC45979.1| probable DNA-binding protein HU [Salinibacter ruber DSM 13855] gi|294343407|emb|CBH24185.1| DNA-binding protein HU [Salinibacter ruber M8] Length = 126 Score = 64.2 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE---AIKISSFATFHVKQKG 60 T T+ D+ + ++ ++ V ++ + D + + I++ +F F VK+ Sbjct: 7 TATKEDVARRVANIQECPLYEAKEQVRSVLTALGDLMIEADPERRIELRNFGVFEVKKTK 66 Query: 61 SR-VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR--GRKCNKDDVTSPSGS 113 ++ RN +TN+ + + RR +F+ +++ + +R G + + G Sbjct: 67 AKPTARNPKTNEPMFVPSRRKTLFRPGKRVEEVLKTPLRELGYEVPEGSAERDDGE 122 >gi|317063950|ref|ZP_07928435.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689626|gb|EFS26461.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +S L + +E +S+ + + + + ++ + +K ATF V ++ R Sbjct: 7 MNKSQLAELYRRETDGEISKLKALKEIDDFMETLNEALMTDGKVKFHEKATFEVLERKPR 66 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T + ++I P++ V FK S I+K Sbjct: 67 VISNPATRERLEIFPKKTVKFKLSKIVK 94 >gi|322836831|ref|YP_004210745.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321165918|gb|ADW71618.1| histone family protein DNA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 132 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 36/91 (39%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + +++ +++ ++++ L F+ L + I Q+ +R Sbjct: 37 QKMSKIQVIRYMAEKTELPVGQCAAFLAGLVELALMQTKKNGEFTIPGLGKLVKSQRAAR 96 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +GRN T + ++I + V + S K + Sbjct: 97 IGRNPATGESIRIAAKTTVKLRISKAAKDVV 127 >gi|281425613|ref|ZP_06256526.1| putative integration host factor IHF alpha subunit [Prevotella oris F0302] gi|281400200|gb|EFB31031.1| putative integration host factor IHF alpha subunit [Prevotella oris F0302] Length = 421 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ T D+ + + + GL D+ F+ + + I + R +KI TF + Sbjct: 4 MAMT-NMKDIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVS 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 SR ++ T + + I+ R + F + +K+ + Sbjct: 63 SRESVDVNTGERIVIEGRDKISFTPDNAMKELVN 96 >gi|255013880|ref|ZP_05286006.1| putative integration host factor IHF alpha subunit [Bacteroides sp. 2_1_7] Length = 363 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + DL +S+ G R + RF+ + + + + +K+ TF + Sbjct: 1 MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++++ Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95 >gi|150007591|ref|YP_001302334.1| putative integration host factor IHF subunit alpha [Parabacteroides distasonis ATCC 8503] gi|298375537|ref|ZP_06985494.1| integration host factor IHF alpha subunit [Bacteroides sp. 3_1_19] gi|149936015|gb|ABR42712.1| putative integration host factor IHF alpha subunit [Parabacteroides distasonis ATCC 8503] gi|298268037|gb|EFI09693.1| integration host factor IHF alpha subunit [Bacteroides sp. 3_1_19] Length = 363 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + DL +S+ G R + RF+ + + + + +K+ TF + Sbjct: 1 MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++++ Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95 >gi|256839778|ref|ZP_05545287.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738708|gb|EEU52033.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 365 Score = 64.2 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + DL +S+ G R + RF+ + + + + +K+ TF + Sbjct: 3 MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++++ Sbjct: 63 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 97 >gi|253583859|ref|ZP_04861057.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834431|gb|EES62994.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 64.2 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K LSR K++ V ++ + + + + ++ F K+ SR Sbjct: 1 MTEKEFI-KFYKRRNLSRSYKEAKGKVDLFWDTLLKALNEDGKVSLKNWGVFEKKEVKSR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 +TN+ V I ++ + F+ + L+ I Sbjct: 60 KVVLPKTNEAVIIGAKKKIKFRTGAGLQDAINSG 93 >gi|253584142|ref|ZP_04861340.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834714|gb|EES63277.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 96 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 9 DLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + +K + ++ L S K + V + I D E ++ + F VK+ R+ N Sbjct: 5 EFIKELKEKRELRSMKIAKNKVDIFWEGIVDVLKTNEKLEFKGWGKFEVKETKERIFSNP 64 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +T + KI ++ + FK LK+ ++ Sbjct: 65 RTKKIEKIPAQKKITFKQGKNLKRSFNTKVK 95 >gi|301310443|ref|ZP_07216382.1| DNA-binding protein HU [Bacteroides sp. 20_3] gi|300832017|gb|EFK62648.1| DNA-binding protein HU [Bacteroides sp. 20_3] Length = 359 Score = 63.8 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + DL +S+ G R + RF+ + + + + +K+ TF + Sbjct: 1 MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++++ Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95 >gi|222475030|ref|YP_002563445.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Florida] gi|254994876|ref|ZP_05277066.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Mississippi] gi|255003010|ref|ZP_05277974.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Puerto Rico] gi|255004136|ref|ZP_05278937.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Virginia] gi|269958917|ref|YP_003328706.1| DNA-binding protein HU [Anaplasma centrale str. Israel] gi|222419166|gb|ACM49189.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale str. Florida] gi|269848748|gb|ACZ49392.1| DNA-binding protein HU [Anaplasma centrale str. Israel] Length = 91 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 44/90 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +V+++ G ++KDS+ + + + + +I++ + T HV Q + Sbjct: 1 MSKEIIVRALMSNLGFTKKDSSSAYDVVMSAVKTALETNHSIRLHNVGTLHVIQCAEKKY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + + P+R V F++S L + Sbjct: 61 HNPKTGRLETLPPKRRVRFRSSRKLLDTVN 90 >gi|88606926|ref|YP_505361.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ] gi|88597989|gb|ABD43459.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ] Length = 91 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 43/90 (47%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +++ +V+++ G ++KDS+ + + I + +I++ + T HV Q + Sbjct: 1 MSKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N +T + P+R V F++S L + Sbjct: 61 HNPKTGHLETLPPKRRVRFRSSRKLLDTVN 90 >gi|262381910|ref|ZP_06075048.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297087|gb|EEY85017.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 363 Score = 63.8 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + DL +S+ G R + RF+ + + + + +K+ TF + Sbjct: 1 MNNRLNIQDLAGLLSERTGKDRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++++ Sbjct: 61 KRESIHVNTGERFLIPEHYKFSFLPDKDLREQVNK 95 >gi|257469043|ref|ZP_05633137.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185] gi|317063289|ref|ZP_07927774.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688965|gb|EFS25800.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 94 Score = 63.8 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 5 ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +++++ ++ L K + + + + DS E + + TF VK+ R+ Sbjct: 1 MKETEIIREYKEKRKLKNLKTAKEKIEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 N +T + KI P +VFK ILKK+ +++ Sbjct: 61 FNNPRTKKIEKISPINKIVFKQGKILKKKFNEEI 94 >gi|153208886|ref|ZP_01947108.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177'] gi|165920600|ref|ZP_02219571.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334] gi|212218921|ref|YP_002305708.1| DNA-binding protein [Coxiella burnetii CbuK_Q154] gi|120575675|gb|EAX32299.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177'] gi|165916802|gb|EDR35406.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334] gi|212013183|gb|ACJ20563.1| bacterial DNA-binding protein [Coxiella burnetii CbuK_Q154] Length = 129 Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK--- 59 +T+S ++ +++ L++K T L + +G + VK+K Sbjct: 32 MTKSQILAHLAESTELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPAT 91 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + + R VV + LK+ + Sbjct: 92 KARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMVE 129 >gi|224418117|ref|ZP_03656123.1| hypothetical protein HcanM9_02456 [Helicobacter canadensis MIT 98-5491] gi|253827444|ref|ZP_04870329.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter canadensis MIT 98-5491] gi|313141652|ref|ZP_07803845.1| DNA-binding protein HU [Helicobacter canadensis MIT 98-5491] gi|253510850|gb|EES89509.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter canadensis MIT 98-5491] gi|313130683|gb|EFR48300.1| DNA-binding protein HU [Helicobacter canadensis MIT 98-5491] Length = 96 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSA-VRGEAIKISSFATFHVKQKGSR 62 + +S+ V + + ++K++ + ++ I + + ++++ F F + + Sbjct: 1 MNKSEFVDLVKEVGEYETKKEAEKAISAFTAAIEKALSKKDGSVELVGFGKFETVLQKGK 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 G T ++ K + V FKA K + + Sbjct: 61 EGTVPGTTKKYKTKDKFVPKFKAGKGFKDAVAAAKK 96 >gi|294660441|ref|NP_853203.2| histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. R(low)] gi|516627|gb|AAA91332.1| open reading frame ORF99; putative [Mycoplasma gallisepticum] gi|284812101|gb|AAP56771.2| histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. R(low)] gi|284930685|gb|ADC30624.1| histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. R(high)] gi|284931405|gb|ADC31343.1| histone-like DNA-binding superfamily protein HimA/HU/Integration host factor [Mycoplasma gallisepticum str. F] Length = 99 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K+++ ++ +K ++ E L +D VT+L + +++ F + R Sbjct: 5 KSLSAAEYLKEMADETNLKVQDIRLVVTSLQKVLAKELATTGEVRLFDIGKFKLVATKPR 64 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N +T Q+++I + + S IL + Sbjct: 65 TGINPKTKQKIQIPAGKKIKLTVSKILTDAV 95 >gi|27379515|ref|NP_771044.1| histone-like protein [Bradyrhizobium japonicum USDA 110] gi|27352667|dbj|BAC49669.1| histone-like protein [Bradyrhizobium japonicum USDA 110] Length = 140 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K +T++ L+ +I++ L++ D + + I F V K Sbjct: 43 MAK-MTKTQLIDAIAEGTQLAKNDVKSVIEYMATVGYKELNESGEFVIPGFVKMSVVNKP 101 Query: 61 ---SRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R+G N T + ++ + V + K + Sbjct: 102 ATEARMGVNPFTKEPMQFAAKPASKSVKASPLKVAKDAV 140 >gi|228943512|ref|ZP_04105952.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976071|ref|ZP_04136585.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783642|gb|EEM31707.1| DNA-binding protein HU [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816164|gb|EEM62349.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 54 Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 29/51 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 + +++L K I+++ L++K++ + + I ++ E ++I F+TF Sbjct: 1 MNKTELTKVIAEKTELTQKEAVAATQAVLDTIINALANKEKVQILGFSTFE 51 >gi|253583854|ref|ZP_04861052.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834426|gb|EES62989.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + +K L + K++ V ++ I + E + + ++ TF K+ +R Sbjct: 1 MTEKEFIKYYRNRNHLKNVKEAKEKVELFWDTILKALDEDEKVVLKNWGTFEKKEVKARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + ++ + ID + + FKA L+ I Sbjct: 61 VMIPKMDKIIIIDAKEKIRFKAGKGLRNVINGA 93 >gi|80159860|ref|YP_398604.1| histone-like DNA binding protein [Clostridium phage c-st] gi|78675450|dbj|BAE47872.1| histone-like DNA binding protein [Clostridium phage c-st] Length = 86 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 KE +S+KD + + + + + TF +G+RVGRN ++ +E++I Sbjct: 8 KEVKVSKKDMDAIYSVVLETVAEVVKEEGKLTTP-IGTFKNTTRGARVGRNPRSGEEIQI 66 Query: 76 DPRRVVVFKASSILKKRIMD 95 + FK S +K+ Sbjct: 67 AESHALTFKQSKAVKEEFNK 86 >gi|317063648|ref|ZP_07928133.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689324|gb|EFS26159.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 4 TITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++ + +L K K L+ K + + + ++ ++ F + + Sbjct: 3 SMNKRELAKVYKKRHSSNNLTVKKAVEEINEFLETVKEAIAIDSEVRFPKRGAFEILIRQ 62 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T ++++I P++ V F+AS +K Sbjct: 63 PRVVSNPVTREQMEIYPKKTVRFRASKKMK 92 >gi|317062390|ref|ZP_07926875.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688066|gb|EFS24901.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Query: 1 MSKTITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 M + R ++ K S+ LS S + + ++ V +K F + Sbjct: 1 MVIQMNRREMAKLYSEMSPDRLSIIKSEDEIEEFLETVKEAIVLDREVKFPRRGIFEILT 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 + RV N T +++ I P++++ F+AS +K Sbjct: 61 RKPRVVANPVTKEQMTIYPKKIIKFRASKKMK 92 >gi|288800014|ref|ZP_06405473.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] gi|288333262|gb|EFC71741.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039] Length = 458 Score = 62.6 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 41/85 (48%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++ + GL ++ F++ +F + + + +KI TF + + +R ++ T Sbjct: 7 LIEMLTSKMGLEVAEAETFISVMFKVVNEGLREDKLVKIKGLGTFKLTKVSARESVDVNT 66 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM 94 + + ++ R + F + ++ + Sbjct: 67 GERIVLEGRDKISFTPDNYMRDLVN 91 >gi|308270543|emb|CBX27155.1| hypothetical protein N47_A11840 [uncultured Desulfobacterium sp.] Length = 54 Score = 62.6 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +T++++V++I E S+ S + V I S G+ + IS F F V Sbjct: 2 ALTKANIVENIQSELEFSKNKSLQIVDAFIETIRGSLESGDDVLISGFGKFCV 54 >gi|317064237|ref|ZP_07928722.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689913|gb|EFS26748.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 91 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 5 ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + + K IS E ++ + V + ++ +K TF V + Sbjct: 4 MNKREFAKTYRKISSE-DMTIETVLTDVDIFLETLREALQIEGKVKFVKRGTFEVISRKP 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T + + + P+++V F+AS +K Sbjct: 63 RVISNPATRERMTVYPKKIVKFRASKKIK 91 >gi|257468667|ref|ZP_05632761.1| non-specific DNA-binding protein HBsu [Fusobacterium ulcerans ATCC 49185] gi|317062922|ref|ZP_07927407.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688598|gb|EFS25433.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 K + V + + D + + + +F VK++ +++ N +T + +I + ++ Sbjct: 20 KIAKERVEIFWETLLDILKEEKKVIFKGWGSFEVKERKAKIFNNPKTKKAERIPACKKII 79 Query: 83 FKASSILKKRIM 94 FK +LKKR Sbjct: 80 FKQGKLLKKRFN 91 >gi|186474602|ref|YP_001863573.1| DNA-binding protein HU-alpha [Burkholderia phymatum STM815] gi|184198561|gb|ACC76523.1| DNA-binding protein HU-alpha [Burkholderia phymatum STM815] Length = 58 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 7/49 (14%), Positives = 24/49 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 + + +L+ +++ G S+ + + + + + RGE +++ F + Sbjct: 1 MNKHELIDAVATSTGESKSSTGEAIDAILEAVTAAVTRGETVQLVGFGS 49 >gi|330880619|gb|EGH14768.1| single-stranded binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 66 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ LV I++ + + + L + + D G I + V ++ +R Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARNALEQLGHIVADQLESGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQ 68 GRN Sbjct: 62 GRNPS 66 >gi|110833609|ref|YP_692468.1| DNA-binding protein [Alcanivorax borkumensis SK2] gi|110646720|emb|CAL16196.1| bacterial DNA-binding protein [Alcanivorax borkumensis SK2] Length = 124 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 8/98 (8%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQK 59 ++ + ++ ++ IS+ GL++KD L + + + + ++K Sbjct: 24 TEPMNKTQIINQISETTGLTKKDVNAVFDQLNDIMEGHLKKRGAGQFTLPGLLKIVTQKK 83 Query: 60 ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T + R +V + LK Sbjct: 84 PATKARKGINPFTGEATTFAAKPARTMVKVRPLKKLKD 121 >gi|257469787|ref|ZP_05633879.1| hypothetical protein FulcA4_10627 [Fusobacterium ulcerans ATCC 49185] gi|317064017|ref|ZP_07928502.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689693|gb|EFS26528.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + + I ++ ++ + + R + + ++ +K TF V + Sbjct: 1 MNKREFA-KIYRKISSDDVTIEAALRDIDIFLETLREALQIEGEVKFVKRGTFEVISRKP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T + + + P+++V F+AS +K Sbjct: 60 RVISNPVTRERMTVYPKKIVRFRASKKIK 88 >gi|73667235|ref|YP_303251.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake] gi|72394376|gb|AAZ68653.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str. Jake] Length = 87 Score = 62.2 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S LV+ ISK+ LS + ++ + F+ I + G +++ F +F V+ Sbjct: 1 MLKSHLVQHISKKNPSLSEEIVSKILNIFFSLIIEYLKNGYRVELRGFGSFTVRSY---- 56 Query: 64 GRNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95 N++T N + + R V F+AS+ K I Sbjct: 57 --NIKTVNTRLTKNKYRKVYFRASNKFIKLINQ 87 >gi|257469401|ref|ZP_05633494.1| hypothetical protein FulcA4_08674 [Fusobacterium ulcerans ATCC 49185] Length = 89 Score = 62.2 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 3/89 (3%) Query: 5 ITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L K K L+ K + + + ++ ++ F + + Sbjct: 1 MNKRELAKVYKKRHSSNNLTVKKAVEEINEFLETVKEAIAIDSEVRFPKRGAFEILIRQP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T ++++I P++ V F+AS +K Sbjct: 61 RVVSNPVTREQMEIYPKKTVRFRASKKMK 89 >gi|153841627|ref|ZP_01993426.1| DNA-binding protein HU [Vibrio parahaemolyticus AQ3810] gi|149745458|gb|EDM56709.1| DNA-binding protein HU [Vibrio parahaemolyticus AQ3810] Length = 137 Score = 62.2 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 21/34 (61%) Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN +T +++ I RRVV F+ LK R+ + Sbjct: 99 RPGRNPKTGEDIPITARRVVTFRPGQKLKARVEN 132 >gi|294340617|emb|CAZ89007.1| putative Integration host factor (IHF) [Thiomonas sp. 3As] Length = 107 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 19 GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPR 78 L+RKD+ + N I + G+ ++I +F F + + + R+ +T + V Sbjct: 7 HLARKDAEEAGEVILNGIMRAVAEGKRVEIRNFGVFSASLRKAHLTRSPKTAKPVPKASA 66 Query: 79 RVVVFKASSIL 89 R F+A L Sbjct: 67 RFPKFRADKPL 77 >gi|254429211|ref|ZP_05042918.1| DNA-binding protein HU [Alcanivorax sp. DG881] gi|196195380|gb|EDX90339.1| DNA-binding protein HU [Alcanivorax sp. DG881] Length = 124 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 8/98 (8%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQK 59 ++ + ++ ++ IS+ GL++KD L + + + + ++K Sbjct: 24 TEPMNKTQIINQISETTGLTKKDVNAVFDELGDIMEGHLKKRGAGQFTLPGLLKIVTQKK 83 Query: 60 ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T + R +V + LK Sbjct: 84 PATKARKGINPFTGEATTFAAKPARTMVKVRPLKKLKD 121 >gi|317063851|ref|ZP_07928336.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689527|gb|EFS26362.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 M K + + L + +E L +S + + + ++ + +K + F + Sbjct: 1 MVKPMNKRSLA-KLYREMSLRTLVLSESIKEIDIFLETLEEALLVDGEVKFTKVGVFEIL 59 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 + SRV N T + + I P++ V F+ S +K Sbjct: 60 TRKSRVIANPVTKEPMMIYPKKTVKFRVSKKMK 92 >gi|9628142|ref|NP_042728.1| histone-like protein [African swine fever virus] gi|56405050|sp|P68742|VHLP_ASFB7 RecName: Full=Viral histone-like protein gi|56405051|sp|P68743|VHLP_ASFM2 RecName: Full=Viral histone-like protein gi|229892031|sp|P0C9E5|VHLP_ASFK5 RecName: Full=Viral histone-like protein A104R gi|229892032|sp|P0C9E3|VHLP_ASFP4 RecName: Full=Viral histone-like protein A104R gi|289177|gb|AAA42689.1| histone-like DNA binding protein [African swine fever virus] gi|780404|gb|AAA65264.1| histone-like protein [African swine fever virus] gi|162849245|emb|CAN10133.1| Histone-like protein [African swine fever virus Benin 97/1] gi|162849417|emb|CAN10382.1| Histone-like protein [African swine fever virus OURT 88/3] gi|291289478|emb|CBH29135.1| BA71V-A104R [African swine fever virus E75] gi|303398719|emb|CBW46700.1| A104R [African swine fever virus Georgia 2007/1] gi|1097423|prf||2113434AG histone-like protein Length = 104 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQK 59 TIT+ +L ++ + L++ R T+ I ++ + + I F VK K Sbjct: 7 PTITKQELYSLVAADTQLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAK 66 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + ++I + V +A + + Sbjct: 67 PARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN 104 >gi|229892033|sp|P0C9E4|VHLP_ASFWA RecName: Full=Viral histone-like protein A104R Length = 104 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 6/98 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS---SFATFHVKQK 59 TIT+ +L ++ + L++ R T+ I ++ + + I F VK K Sbjct: 7 PTITKQELYSLVAADTQLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAK 66 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + ++I + V +A + + Sbjct: 67 PARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN 104 >gi|253584313|ref|ZP_04861511.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834885|gb|EES63448.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 92 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 5 ITRSDLVK--SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L K +I + +SRK + + + ++ + ++K + TF V ++ + Sbjct: 4 LNKKELAKVYNIVSQGKISRKAALEEINIFTQTLQEALCKYNSVKFINRGTFEVIKRKPK 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASS 87 V N T + +KI +VV F+AS Sbjct: 64 VVSNPSTRELMKISLGKVVRFRASK 88 >gi|73666903|ref|YP_302919.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake] gi|72394044|gb|AAZ68321.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str. Jake] Length = 94 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK + +V+++ E GL++K S++ + I ++ I++ + T HV Q Sbjct: 1 MSKDM----VVRTLMGELGLTKKVSSQAYDLVMLSIQNALENSHLIRLHNVGTLHVIQCA 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + N +T + + P++ V F++S L I Sbjct: 57 EKKYHNPKTGKLETLAPKKRVRFRSSKKLSNAIN 90 >gi|50365273|ref|YP_053698.1| histone-like DNA-binding protein [Mesoplasma florum L1] gi|50363829|gb|AAT75814.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1] Length = 377 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 3 KTITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAV-RGEAIKISSFATFHVKQK 59 +T++DLV SI L++ + V +LF + ++ V G IKI++FA F Sbjct: 279 NKVTKNDLVNSIFSNNENKLTKVKIKKIVDSLFELMENNLVNEGSEIKINNFAKFSTVFV 338 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 ++++T + + R+ + FK+ L++ + ++ Sbjct: 339 DETTMKDMKTGELKMVPSRKTIKFKSLKGLRESLNNE 375 >gi|257470012|ref|ZP_05634104.1| hypothetical protein FulcA4_11773 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 61.8 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 5 ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + + K IS E ++ + V + ++ +K TF V + Sbjct: 1 MNKREFAKTYRKISSE-DMTIETVLTDVDIFLETLREALQIEGKVKFVKRGTFEVISRKP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T + + + P+++V F+AS +K Sbjct: 60 RVISNPATRERMTVYPKKIVKFRASKKIK 88 >gi|253584115|ref|ZP_04861313.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834687|gb|EES63250.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 92 Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 5 ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L K S + +S+K + + + ++ ++ +++ + V ++ R Sbjct: 4 MNKRELAKIYSTITQGKISQKAALEEINIFTQTLQEALMKYDSVTFVNRGILEVLERKPR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASS 87 + N T + +KI P++VV F+AS Sbjct: 64 LVSNPSTRELMKIYPKKVVRFRASK 88 >gi|257468105|ref|ZP_05632201.1| hypothetical protein FulcA4_02137 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + R ++ K S+ LS S + + ++ V +K F + + R Sbjct: 1 MNRREMAKLYSEMSPDRLSIIKSEDEIEEFLETVKEAIVLDREVKFPRRGIFEILTRKPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T +++ I P++++ F+AS +K Sbjct: 61 VVANPVTKEQMTIYPKKIIKFRASKKMK 88 >gi|209527523|ref|ZP_03276025.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] gi|209492011|gb|EDZ92364.1| histone family protein DNA-binding protein [Arthrospira maxima CS-328] Length = 73 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF-- 83 + F+ I G+ + + F K++ +R N +T + ++ R VV F Sbjct: 1 RAILDLAFSAISQEIESGQPVVVRGLGKFTPKEQPARTKTNPETGETTEVPARTVVNFRV 60 Query: 84 -KASSILKKR 92 K S ++ Sbjct: 61 IKPSKDTEEA 70 >gi|317062494|ref|ZP_07926979.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688170|gb|EFS25005.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 91 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + R ++ K S+ LS + + + ++ +K F + + R Sbjct: 4 MNRREMAKLYSEMSPDRLSIIKAEDEIEEFLETLKEAIALDREVKFPRRGIFEILTRKPR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T +++ I P++++ F+AS +K Sbjct: 64 VVANPVTKEQMTIYPKKIIKFRASKKIK 91 >gi|262037630|ref|ZP_06011076.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264] gi|261748346|gb|EEY35739.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264] Length = 55 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 +GE ++ + TF V+++ +R GRN QT +E+KI Sbjct: 1 AKGETVQFVGWGTFGVQKRAARTGRNPQTGKEIKIAA 37 >gi|253583070|ref|ZP_04860284.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835057|gb|EES63604.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 94 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + V + + D E + + +F VK+ R+ N +T + KI +VFK Sbjct: 22 AKEKVEIFWENLADILKEEEKLIFKGWGSFEVKEVKERIFNNPRTKKSEKIPATNKIVFK 81 Query: 85 ASSILKKRIMDDM 97 ILK++ + + Sbjct: 82 QGKILKRKFNEKV 94 >gi|39939020|ref|NP_950786.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39939184|ref|NP_950950.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722129|dbj|BAD04619.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39722293|dbj|BAD04783.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 110 Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS-- 61 +T+ +L+KSI+++ S + F + N I + + +SS F +K + + Sbjct: 1 MTKKELIKSIAEKNKTSITQTEEFYNSFENAIIKAITNNAEVVLSSKLGKFILKTRKAHL 60 Query: 62 ----------RVGRN--LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R G+ +T + +KI + VV FK S +K ++ + Sbjct: 61 TPETKFIINKRTGKKNAQRTGKNLKIPSKTVVTFKLSKTIKDKVKE 106 >gi|154707087|ref|YP_001423674.1| DNA-binding protein [Coxiella burnetii Dugway 5J108-111] gi|165923916|ref|ZP_02219748.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334] gi|154356373|gb|ABS77835.1| bacterial DNA-binding protein [Coxiella burnetii Dugway 5J108-111] gi|165916641|gb|EDR35245.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334] Length = 149 Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 8/96 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GS 61 +S L I++ LS+K+ + + L + + +G + VK+K + Sbjct: 54 KSQLTTHIAEATNLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKA 113 Query: 62 RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 R G N T + + R VV +A LK+ + Sbjct: 114 RKGINPFTGEMMTFKAKPARNVVKVRALKRLKEMVE 149 >gi|218261907|ref|ZP_03476580.1| hypothetical protein PRABACTJOHN_02251 [Parabacteroides johnsonii DSM 18315] gi|218223701|gb|EEC96351.1| hypothetical protein PRABACTJOHN_02251 [Parabacteroides johnsonii DSM 18315] Length = 422 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ +T DL +++ G + S RF+ + + + +K+ TF + Sbjct: 1 MNNRLTIQDLAGLLAEYTGKDKNSSERFLREFIAVVSEGVYTDKLVKVKGLGTFKIIPVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++ + Sbjct: 61 KRESIHVNTGERFVIPEHYKFSFLPDKELRELVNK 95 >gi|253583860|ref|ZP_04861058.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834432|gb|EES62995.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 89 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Query: 5 ITRSDLVK---SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + +L K +IS+E + R+++ + + + ++ + ++ + F V ++ Sbjct: 1 MNKRELAKIYSTISQE-EVLRREALKEIEIFIQTLQEALQKYNSVTFVNRGVFEVAKRKP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASS 87 +V N T + +KI PR+ V F+AS Sbjct: 60 KVVSNPSTRELMKIYPRKTVKFRASK 85 >gi|257468389|ref|ZP_05632483.1| hypothetical protein FulcA4_03549 [Fusobacterium ulcerans ATCC 49185] gi|317062662|ref|ZP_07927147.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688338|gb|EFS25173.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEF---GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + ++ + ++ +S ++ + + ++ ++ F + + Sbjct: 1 MNKKEMA-KLYQKMTSEKISIMEAKEEIEEFLETVKEAIALDGEVRFPKRGAFEILTRQP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ N T +++KI P++ V F+AS +K Sbjct: 60 RLVANPITKEQMKIYPKKTVRFRASKKMK 88 >gi|325107670|ref|YP_004268738.1| histone family protein DNA-binding protein [Planctomyces brasiliensis DSM 5305] gi|324967938|gb|ADY58716.1| histone family protein DNA-binding protein [Planctomyces brasiliensis DSM 5305] Length = 126 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 9/101 (8%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAI-KISSFATFHVKQK 59 +K +++++L+ S+S+ GLS+KD + + L I + RG + + V++K Sbjct: 26 AKPMSKTELLTSLSESTGLSKKDVSAVLDGLGEVIQKNLGKRGPGVFNLPGLLKIQVQRK 85 Query: 60 GSRVGR---NL-QTNQEVKI---DPRRVVVFKASSILKKRI 93 + N + + + + R VV + LK + Sbjct: 86 PATKATTRENPFKPGEMMTVKAKPARNVVKVRPLKGLKDMV 126 >gi|162454873|ref|YP_001617240.1| histone-like protein [Sorangium cellulosum 'So ce 56'] gi|161165455|emb|CAN96760.1| histone-like protein [Sorangium cellulosum 'So ce 56'] Length = 112 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 8/100 (8%) Query: 3 KTITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK- 59 KT+++S L+++I++ G LSRK + +L + + FA F V ++ Sbjct: 13 KTLSKSGLIQAITEAAGDELSRKQVKNVLESLITIGHRELKKSGVFTLPGFAKFRVVKRP 72 Query: 60 --GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T Q + + V + +K ++ Sbjct: 73 ATKARQGINPFTKQPMTFAAKPASKSVRARPIKAIKDALL 112 >gi|302346575|ref|YP_003814873.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] gi|302151149|gb|ADK97410.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845] Length = 455 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 5 ITRS--DLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +S L+ +++K+ LS D+ FV F+ I G +KI TF V+ Sbjct: 1 MAKSAIQLITSALAKQHNLSADDAAAFVDAFFDIISSELKNGNQVKIKGLGTFKVQAVKP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I+ + F +++K+ + Sbjct: 61 RESVNVNTGERVLIEGHDKISFTPDTVMKELVNK 94 >gi|288802184|ref|ZP_06407624.1| integration host factor IHF alpha subunit [Prevotella melaninogenica D18] gi|288335151|gb|EFC73586.1| integration host factor IHF alpha subunit [Prevotella melaninogenica D18] Length = 455 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Query: 5 ITRS--DLV-KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +S L+ +++K+ LS D+ FV F+ I G +KI TF V+ Sbjct: 1 MAKSAIQLITSALAKQHNLSVADAAAFVDAFFDIISSELKNGNQVKIKGLGTFKVQAVKP 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R N+ T + V I+ + F +++K+ + Sbjct: 61 RESVNVNTGERVLIEGHDKISFTPDTVMKELVNK 94 >gi|255594034|ref|XP_002536006.1| conserved hypothetical protein [Ricinus communis] gi|223521229|gb|EEF26379.1| conserved hypothetical protein [Ricinus communis] Length = 169 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 26/49 (53%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 + R +L+ +++ G S+ ++ + + + + +RGE +++ F + Sbjct: 121 VNRHELIDAVAVATGGSKTNTAEAIDAILETVTAAVIRGETVQLIGFGS 169 >gi|257468209|ref|ZP_05632305.1| hypothetical protein FulcA4_02657 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + R ++ K S+ LS + + + ++ +K F + + R Sbjct: 1 MNRREMAKLYSEMSPDRLSIIKAEDEIEEFLETLKEAIALDREVKFPRRGIFEILTRKPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T +++ I P++++ F+AS +K Sbjct: 61 VVANPVTKEQMTIYPKKIIKFRASKKIK 88 >gi|253582642|ref|ZP_04859863.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835512|gb|EES64052.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 94 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 5 ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L + SK + G + K++ + + + ++ + IK TF V +K R Sbjct: 6 MNKKELARVYSKMSKEGTNIKEALKEIDIFTKTVEEALLIKGYIKFIKRGTFMVLKKKPR 65 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 N T + ++I P+ V FK S L + Sbjct: 66 TVSNPSTKELMRIYPKNTVKFKTSKKLVE 94 >gi|298373792|ref|ZP_06983781.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058] gi|298274844|gb|EFI16396.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058] Length = 94 Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + +L+ +S+ +++ + F+ EI D G I+ F + ++ Sbjct: 1 MDNKELIVKLSRSTKATQEKTKEFLDAFVEEISDKLGAGNHIEFLDFGVLQTVVREQKII 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + P+ VV K + +K+ I + Sbjct: 61 TNPKTQKRTLYPPKNVVELKVTKSVKEHIKN 91 >gi|253582815|ref|ZP_04860035.1| predicted protein [Fusobacterium varium ATCC 27725] gi|257470501|ref|ZP_05634591.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans ATCC 49185] gi|317064708|ref|ZP_07929193.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|251835391|gb|EES63932.1| predicted protein [Fusobacterium varium ATCC 27725] gi|313690384|gb|EFS27219.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 94 Score = 61.1 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + D +K K+ L+ ++ V + I + ++ + F V + Sbjct: 1 MNKKDFIKLYRKKLNNLTIAEAKEDVEAILEIIEAGLKKDGKVQFFNKGVFTVGNIKPKT 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T + ++ + V F AS LK +I D Sbjct: 61 ISNPKTRELMQTTEMKKVKFNASFKLKDKIQD 92 >gi|46562241|ref|YP_009044.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough] gi|46447778|gb|AAS94444.1| DNA-binding protein HU, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311235386|gb|ADP88239.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris RCH1] Length = 117 Score = 61.1 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT ++ LV + + L+ + + + L+ + +G + + Sbjct: 1 MEKT-SKPQLVAYLRERAHLTEEQALMTLKALYLFSLEHLEKGVGVVLPDIGQIKPSMGK 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 VGRN +T + I+P+ + F AS LK+ + D + + + D S G+ Sbjct: 60 GGVGRNFRTGEATVIEPKLKLTFSASKALKEPL-DAAQRKAAKQRDAKSQDGA 111 >gi|68171138|ref|ZP_00544547.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88657616|ref|YP_507602.1| DNA-binding protein HU [Ehrlichia chaffeensis str. Arkansas] gi|67999463|gb|EAM86103.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599073|gb|ABD44542.1| DNA-binding protein HU [Ehrlichia chaffeensis str. Arkansas] Length = 94 Score = 60.7 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK + +V+++ E GL++K S++ + I ++ I++ + T HV Q Sbjct: 1 MSKDM----VVRTLMGELGLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCA 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + N +T + + P++ V F++S L I Sbjct: 57 EKKYHNPKTGKLETLAPKKRVRFRSSKKLSNAIN 90 >gi|120586958|ref|YP_961303.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564372|gb|ABM30115.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris DP4] Length = 117 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M KT ++ LV + + L+ + + + L+ + +G + + Sbjct: 1 MEKT-SKPQLVAYLRERAHLTEEQALMTLKALYLFSLEHLEKGVGVVLPDIGQIKPSMGK 59 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 VGRN +T + I+P+ + F AS LK+ + D + + + D S G+ Sbjct: 60 GGVGRNFRTGEATVIEPKLKLTFSASKALKEPL-DAAQRKAAKQRDAKSQDGT 111 >gi|317063948|ref|ZP_07928433.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689624|gb|EFS26459.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 100 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + K+ GL S ++ V ++ + ++ E++ + F K +R Sbjct: 4 MTEKEFLTLYQKKRGLKSLNEAKEKVNMFWDTLFEALEENESVSFRGWGVFEKKVVPARR 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N+ T + PR+ V F+ S L RI ++ + Sbjct: 64 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINEEKK 98 >gi|49146394|ref|YP_025502.1| putative integration host factor alpha subunit [Caedibacter taeniospiralis] gi|40458362|gb|AAR87110.1| putative integration host factor alpha subunit [Caedibacter taeniospiralis] Length = 183 Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 49/97 (50%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +++++R++L+K +S + SR+D F L N + + + I + F + Sbjct: 30 NRSMSRNELIKHLSLKTKFSREDCNHFFYELMNLLREQLLNNRIILLEGLGRFETRVSFR 89 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + N +T +++K +RVV+FK ++ K I D+ Sbjct: 90 KNAHNPRTMEKIKPREKRVVLFKFANEFKALISDEAH 126 >gi|94317729|gb|ABF15024.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Newport] Length = 48 Score = 60.3 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 24/48 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52 + +S+L+ ++++ +S+ + V L N + + G + ++ F Sbjct: 1 MNKSELIMKVAEDADISKAKAEAAVNALINSVTEELKAGGTVALTGFG 48 >gi|325914662|ref|ZP_08177003.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325539164|gb|EGD10819.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 92 Score = 60.3 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 29/106 (27%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + R DLV+ ++ E L + +TR V LF I +G + IS F F Sbjct: 1 MNRKDLVELLAHELDLPKHKTTRLVAMLFEAIVAQLGKGREVNISGFGVFG--------- 51 Query: 65 RNLQTNQEVKIDPR---------------RVVVFKASSILKKRIMD 95 ++ V I R F+ S L +++ Sbjct: 52 -----SEPVTIHAASTRRLAPSLQSTHTIRRPTFRPSDGLTRKLSK 92 >gi|317064289|ref|ZP_07928774.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689965|gb|EFS26800.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 60.3 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76 + +S K + + I ++ + IK TF + ++ SR+ N T + +KI Sbjct: 17 KEEISLKKAQEEIDEFIEVIQEAILIDGKIKFKEIGTFEILKRHSRIIANPVTKEPMKIY 76 Query: 77 PRRVVVFKASSILK 90 P++ + F+ S LK Sbjct: 77 PKKTIKFRVSKNLK 90 >gi|257469716|ref|ZP_05633808.1| hypothetical protein FulcA4_10270 [Fusobacterium ulcerans ATCC 49185] Length = 97 Score = 60.3 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + K+ GL S ++ V ++ + ++ E++ + F K +R Sbjct: 1 MTEKEFLTLYQKKRGLKSLNEAKEKVNMFWDTLFEALEENESVSFRGWGVFEKKVVPARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N+ T + PR+ V F+ S L RI ++ + Sbjct: 61 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINEEKK 95 >gi|255021291|ref|ZP_05293339.1| histone family protein DNA-binding protein [Acidithiobacillus caldus ATCC 51756] gi|254969154|gb|EET26668.1| histone family protein DNA-binding protein [Acidithiobacillus caldus ATCC 51756] Length = 43 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 ++ +R GRN T QE+ I R FKA L+ + Sbjct: 7 EREARKGRNPATGQEIMIAASRTPEFKAGKALRDAVN 43 >gi|257470065|ref|ZP_05634157.1| hypothetical protein FulcA4_12040 [Fusobacterium ulcerans ATCC 49185] Length = 90 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76 + +S K + + I ++ + IK TF + ++ SR+ N T + +KI Sbjct: 15 KEEISLKKAQEEIDEFIEVIQEAILIDGKIKFKEIGTFEILKRHSRIIANPVTKEPMKIY 74 Query: 77 PRRVVVFKASSILK 90 P++ + F+ S LK Sbjct: 75 PKKTIKFRVSKNLK 88 >gi|253584372|ref|ZP_04861570.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834944|gb|EES63507.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 101 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + K+ GL S ++ V ++ + ++ E++ + F K +R Sbjct: 4 MTEREFLSLYQKKRGLKSFNEAKEKVNMFWDTLFEALKENESVSFRGWGVFEKKVVPARR 63 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N+ T + PR+ V F+ S L RI D+ + Sbjct: 64 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINDEKK 98 >gi|161830256|ref|YP_001597572.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331] gi|161762123|gb|ABX77765.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331] Length = 149 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 8/96 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GS 61 +S L I+ LS+K+ + + L + + +G + VK+K + Sbjct: 54 KSQLTTHIAGATNLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKA 113 Query: 62 RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 R G N T + + R VV +A LK+ + Sbjct: 114 RKGINPFTGEMMTFKAKPARNVVKVRALKRLKEMVE 149 >gi|317503238|ref|ZP_07961296.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315665651|gb|EFV05260.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 436 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Query: 5 ITR-SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T DL + + ++ G+ D+ F++ + I + R +KI TF + SR Sbjct: 1 MTNIKDLARFLVEKHGIKLADAELFISLMTEIINEGVHRERQVKIKGLGTFKLTSVSSRE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 ++ T + + I+ R + F + +K+ + Sbjct: 61 SIDVNTGERIVIEGRDKLSFAPDNAMKELVNQ 92 >gi|317062955|ref|ZP_07927440.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688631|gb|EFS25466.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 92 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 1 MSKTITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 M + + +L K K +S + + + + +S + F + Sbjct: 1 MVIQMNKRELAKVYVKMSPKNISIVQAVKEIEEFLETLKESIALDNEVGFPKRGVFEILT 60 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 + RV N T + + + P++ V F+AS +K Sbjct: 61 RQPRVVANPVTRERMTVYPKKTVKFRASKKIK 92 >gi|257470164|ref|ZP_05634256.1| hypothetical protein FulcA4_12557 [Fusobacterium ulcerans ATCC 49185] gi|317064383|ref|ZP_07928868.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690059|gb|EFS26894.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEFG---LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + R +L + ++ ++ + + + ++ +K F + + Sbjct: 1 MNRKELA-KLYQKMSSEKITITKAREEIEKFLETVEEAIAIDGGVKFQERGIFEILTRQP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 R+ N T ++++I P++ V F+AS +K Sbjct: 60 RMVSNPVTREQMEIYPKKTVKFRASKKMK 88 >gi|294054815|ref|YP_003548473.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293614148|gb|ADE54303.1| histone family protein DNA-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 107 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVR----------GEA-IK----- 47 +T+ +LV+++ KE GL S+ ++TR + + + + GE +K Sbjct: 1 MTKIELVEALQKELGLESKAEATRTLDAVGAVYLKALKKAAKEIKKPKKGEPAVKPAVVA 60 Query: 48 -ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + F+V R GRN V + ++ + FKA+ + ++ Sbjct: 61 PLPGVGNFYVGASAPRKGRNPLDGSTVNVKAKKKISFKAAPSISAKL 107 >gi|153208222|ref|ZP_01946632.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177'] gi|120576127|gb|EAX32751.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177'] Length = 149 Score = 59.9 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GS 61 +S L I++ LS+K+ + + L + + +G + VK+K + Sbjct: 54 KSQLTTHIAEATNLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKA 113 Query: 62 RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 R G N T + + R VV +A LK+ Sbjct: 114 RKGINPFTGEMMTFKAKPARNVVKVRALKRLKE 146 >gi|220923813|ref|YP_002499115.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS 2060] gi|219948420|gb|ACL58812.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS 2060] Length = 66 Score = 59.5 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%) Query: 44 EAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 EA+++ V+ KG RVGRN +T EV I PRRV+VFK S++LK + + Sbjct: 9 EAVRLRLL---VVRDKGKRVGRNPKTGVEVAIAPRRVMVFKPSNVLKAHVTGGLA 60 >gi|68171780|ref|ZP_00545125.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88658424|ref|YP_507220.1| integration host factor, beta subunit [Ehrlichia chaffeensis str. Arkansas] gi|67998805|gb|EAM85512.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|88599881|gb|ABD45350.1| integration host factor, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 87 Score = 59.5 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S L++ ISK+ LS + ++ + F+ I D +++ F +F V+ Sbjct: 1 MLKSHLIQHISKKNPSLSEEIVSKILNIFFSLIVDYLKNDCRVELRGFGSFTVRSY---- 56 Query: 64 GRNLQT-NQEVKIDPRRVVVFKASSILKKRIMD 95 N++T N + + V F+ASS K I Sbjct: 57 --NIKTANARLAKSKYKKVYFRASSKFIKIINQ 87 >gi|67459159|ref|YP_246783.1| integration host factor beta-subunit [Rickettsia felis URRWXCal2] gi|67004692|gb|AAY61618.1| Integration host factor beta-subunit [Rickettsia felis URRWXCal2] Length = 80 Score = 59.5 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +T++ L+ + + LS++D V + + + S E I+I +F F ++++ Sbjct: 2 VTKNYLIDKVHDKLNYLSKEDVKDSVDLILDYLSRSLKEQERIEIRNFGNFSIRKRK 58 >gi|262037516|ref|ZP_06010975.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264] gi|261748446|gb|EEY35826.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264] Length = 57 Score = 59.5 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 41 VRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDP 77 +GE ++ + TF V+++ +R GRN QT +E+KI Sbjct: 1 AKGETVQFVGWGTFGVQKRAARKGRNPQTGKEIKIAA 37 >gi|57239343|ref|YP_180479.1| putative integration host factor beta-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58579309|ref|YP_197521.1| putative integration host factor beta-subunit [Ehrlichia ruminantium str. Welgevonden] gi|58617363|ref|YP_196562.1| putative integration host factor beta-subunit [Ehrlichia ruminantium str. Gardel] gi|57161422|emb|CAH58346.1| putative integration host factor beta subunit [Ehrlichia ruminantium str. Welgevonden] gi|58416975|emb|CAI28088.1| Putative Integration host factor beta-subunit [Ehrlichia ruminantium str. Gardel] gi|58417935|emb|CAI27139.1| Putative Integration host factor beta-subunit [Ehrlichia ruminantium str. Welgevonden] Length = 87 Score = 59.5 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 8/93 (8%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +S L++ ISK+ LS +R + T F+ I + +++ F F V+ Sbjct: 1 MLKSHLIQHISKKNPSLSEDIVSRILHTFFSLIVEYLKDNHRVELRGFGAFTVRTY---- 56 Query: 64 GRNLQTNQEVKIDPRR-VVVFKASSILKKRIMD 95 N++T + V F+ S+ K I Sbjct: 57 --NIKTANTRLTKNKYQKVYFRPSNKFIKLINQ 87 >gi|253582550|ref|ZP_04859771.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835420|gb|EES63960.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 92 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76 + + +T+ + + ++ V+ +K TF + ++ R+ N T + +KI Sbjct: 18 KNNIDINQATKEIEIFLETLEEALVKYGKVKFVERGTFEIMERKPRIISNPSTRELMKIY 77 Query: 77 PRRVVVFKASS 87 P++ V F+ S Sbjct: 78 PKKTVKFRVSK 88 >gi|57239022|ref|YP_180158.1| putative DNA-binding protein HU [Ehrlichia ruminantium str. Welgevonden] gi|58578963|ref|YP_197175.1| putative DNA-binding protein HU [Ehrlichia ruminantium str. Welgevonden] gi|58617020|ref|YP_196219.1| putative DNA-binding protein HU [Ehrlichia ruminantium str. Gardel] gi|57161101|emb|CAH58010.1| putative DNA-binding protein HU-beta [Ehrlichia ruminantium str. Welgevonden] gi|58416632|emb|CAI27745.1| Putative DNA-binding protein HU [Ehrlichia ruminantium str. Gardel] gi|58417589|emb|CAI26793.1| Putative DNA-binding protein HU [Ehrlichia ruminantium str. Welgevonden] Length = 94 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MSK + +V+++ E GL++K S++ + I ++ I++ + T HV Q Sbjct: 1 MSKDM----VVRTLMAELGLTKKTSSQAYDLVMLNIQNALKTSHLIRLHNVGTLHVIQCA 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + N +T + + P++ V F++S L I Sbjct: 57 EKKYHNPKTGKLETLSPKKRVRFRSSKKLSNSIN 90 >gi|198283420|ref|YP_002219741.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665856|ref|YP_002426013.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247941|gb|ACH83534.1| histone family protein DNA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518069|gb|ACK78655.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 73 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 27/99 (27%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+TR +L+ + FG S K V + F+ R Sbjct: 2 TVTRQELMDYLVDTFGFSHKGCAELVASFFS---------------------------RP 34 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 GRN T +I RVV FKA L++R ++ + Sbjct: 35 GRNPGTGVPCEITACRVVTFKARPKLRQRCNPHVQDAEA 73 >gi|253582651|ref|ZP_04859872.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835521|gb|EES64061.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 91 Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 5 ITRSDLVKSISK--EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + + +K K + ++ ++ + V + I ++ + IK F V ++ R Sbjct: 1 MNKLEFIKEYKKCYKKNITYTEAKKDVEAFLDLIENNIMNVGNIKFKEIGAFSVLERKER 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKK 91 V N +T + + I P V F + + K+ Sbjct: 61 VISNPKTRERMTIYPLTTVKFIPTKVKKE 89 >gi|320101860|ref|YP_004177451.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC 43644] gi|319749142|gb|ADV60902.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC 43644] Length = 130 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 8/97 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RGEAI-KISSFATFHVKQKGS-- 61 T++++ +++ L++K L I + +G + +I + V + + Sbjct: 34 TKNEVFGKLAESTQLTKKQVAAVFEQLEKMIIEELGPKGSQVFQIPNLVKLSVTVRPATA 93 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 ++GRN T + +KI R+ V + +LK+ + Sbjct: 94 EKMGRNPATGEPMKIAAKPARKAVKVRVLKMLKEAVE 130 >gi|188997008|ref|YP_001931259.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237756708|ref|ZP_04585210.1| integration host factor subunit beta [Sulfurihydrogenibium yellowstonense SS-5] gi|188932075|gb|ACD66705.1| histone family protein DNA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|237691132|gb|EEP60238.1| integration host factor subunit beta [Sulfurihydrogenibium yellowstonense SS-5] Length = 99 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Query: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQKGSR 62 + + D+VK I ++ + K V +F + ++ +GE I+I +F V K+K Sbjct: 1 MKKPDIVKYIKEKHPEMDLKSIKDVVDEIFEVMAEALAKGEKIEIRKIGSFRVLKRKKPL 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD-DMRGRKCNK 104 GR ++ + V FK +LK+ + + G K K Sbjct: 61 KGRK-------RVSYSKTVHFKPGKVLKRALKSVSLEGEKNAK 96 >gi|254995187|ref|ZP_05277377.1| integration host factor, beta subunit [Anaplasma marginale str. Mississippi] gi|255003362|ref|ZP_05278326.1| integration host factor, beta subunit [Anaplasma marginale str. Puerto Rico] gi|255004485|ref|ZP_05279286.1| integration host factor, beta subunit [Anaplasma marginale str. Virginia] Length = 91 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 4/88 (4%) Query: 7 RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 +SDL++ ++++ L ++ V F+ I G +++ F F + V + Sbjct: 4 KSDLIQRVARKNPSLGEAVVSQIVGIFFSSIVGCVSSGCRVELRGFGAFSTRHY---VLK 60 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 N N + + V F+ S L K + Sbjct: 61 NHSLNSRLPKPTYKRVYFRPSEKLVKAV 88 >gi|85057552|ref|YP_456468.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789657|gb|ABC65389.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 122 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 15/108 (13%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS 61 K + + +L+KSI++ S + F + N + + E + +SS F +K + + Sbjct: 11 KNMNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKA 70 Query: 62 RVG------RNLQTNQE--------VKIDPRRVVVFKASSILKKRIMD 95 + N QT ++ +KI + VV FK S +K + Sbjct: 71 HITPETKFIINKQTGKKTVKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 118 >gi|88608036|ref|YP_506518.1| DNA-binding protein HU [Neorickettsia sennetsu str. Miyayama] gi|88600205|gb|ABD45673.1| DNA-binding protein HU [Neorickettsia sennetsu str. Miyayama] Length = 93 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 42/86 (48%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + DL+ +++ +S+ + R + L+ I +S R ++I+I T V +K + Sbjct: 1 MKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATTY 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILK 90 + +T Q V+ V F SS++K Sbjct: 61 CDPKTKQMVRQAETERVKFTISSVVK 86 >gi|317064578|ref|ZP_07929063.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690254|gb|EFS27089.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 100 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + + DLVK + + + +D+ + + + ++ +K F + + Sbjct: 5 KIMNKKDLVKIYKDKSKMENARDALADINDFIETLKKAILKDGTVKFHDNGIFEILVRKP 64 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +V N T + + I P++ V F+ S K+ + + Sbjct: 65 KVISNPSTRELITIYPKKTVRFRMSKGTKEGMNN 98 >gi|257468700|ref|ZP_05632794.1| hypothetical protein FulcA4_05120 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +L K K +S + + + + +S + F + + R Sbjct: 1 MNKRELAKVYVKMSPKNISIVQAVKEIEEFLETLKESIALDNEVGFPKRGVFEILTRQPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T + + + P++ V F+AS +K Sbjct: 61 VVANPVTRERMTVYPKKTVKFRASKKIK 88 >gi|239627561|ref|ZP_04670592.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239517707|gb|EEQ57573.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 99 Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D+V I++ G ++K + F+ + + ++ GE I TF + K V N Sbjct: 4 KEDIVTRIARRSGHTKKATYEFMKAFGDILTETLADGERFHIHKVITFRPEYKEECVRYN 63 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T +EV I P V S L++ + D Sbjct: 64 PKTREEVIIPPHIKVKTVIGSELERALFD 92 >gi|15604381|ref|NP_220897.1| hypothetical protein RP524 [Rickettsia prowazekii str. Madrid E] gi|14423682|sp|Q9ZD26|DBHL_RICPR RecName: Full=DNA-binding protein HU-like gi|3861073|emb|CAA14973.1| unknown [Rickettsia prowazekii] gi|292572136|gb|ADE30051.1| Integration host factor beta-subunit [Rickettsia prowazekii Rp22] Length = 80 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +T++ L+ + + LS++D V + + + +S + I+I +F F ++++ Sbjct: 2 VTKNYLIDKVHDKLDYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 58 >gi|2944015|gb|AAC05204.1| unknown [Rickettsia rickettsii str. 'Sheila Smith'] Length = 90 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 IT++ L+ I + LS++D V + + + +S + + I+I +F F ++++ Sbjct: 2 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKQQKRIEIRNFGNFSIRKRK 58 >gi|257469615|ref|ZP_05633707.1| histone family protein DNA-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEFGLSR---KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + L + +E L +S + + + ++ + +K + F + + S Sbjct: 1 MNKRSLA-KLYREMSLRTLVLSESIKEIDIFLETLEEALLVDGEVKFTKVGVFEILTRKS 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T + + I P++ V F+ S +K Sbjct: 60 RVIANPVTKEPMMIYPKKTVKFRVSKKMK 88 >gi|253582650|ref|ZP_04859871.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835520|gb|EES64060.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 101 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 37/84 (44%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S +++ V T + + S GE +K + F +K+ R LQT +E+ I R Sbjct: 18 SLEEAKEKVDTFWKTLKTSLENGEKVKFKDWGNFEMKEVRPRKIIELQTKKEIIIPKSRK 77 Query: 81 VVFKASSILKKRIMDDMRGRKCNK 104 + F + L K + + K N+ Sbjct: 78 IKFTSGKGLVKSVNVKCKEGKINE 101 >gi|254796988|ref|YP_003081825.1| DNA-binding protein HU [Neorickettsia risticii str. Illinois] gi|254590174|gb|ACT69536.1| DNA-binding protein HU [Neorickettsia risticii str. Illinois] Length = 98 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 5/91 (5%) Query: 5 ITRS-----DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T+ DL+ +++ +S+ + R + L+ I +S ++++I T V +K Sbjct: 1 MTKEVVKNVDLINVVAEGASISKGHAKRAINALYEYIYESLKHRKSVRIPKVGTLSVVKK 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 + + +T Q V+ V F SS++K Sbjct: 61 KATTYCDPKTKQMVRQAETERVKFTISSVVK 91 >gi|330884084|gb|EGH18233.1| single-stranded binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 71 Score = 58.4 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%) Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 + + L + D G I + V ++ +R GRN T ++I ++ + F + Sbjct: 1 KALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKAIKFVPA 60 Query: 87 SILKKRIMDDM 97 +L I + Sbjct: 61 KVLNDLINKGL 71 >gi|149177891|ref|ZP_01856489.1| DNA-binding protein HU, putative [Planctomyces maris DSM 8797] gi|148843231|gb|EDL57596.1| DNA-binding protein HU, putative [Planctomyces maris DSM 8797] Length = 129 Score = 58.4 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 47/100 (47%), Gaps = 9/100 (9%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAI-KISSFATFHVKQKG 60 K +T+++++ ++++ GL++K+ T + L + I + RG + + V++K Sbjct: 30 KPLTKTEILNALAEGSGLTKKEVTAVLDELSSLISKNLGKRGPGVFNMPGLLKIQVQRKP 89 Query: 61 SRVGR---NL-QTNQEVKI---DPRRVVVFKASSILKKRI 93 + N + + +++ R VV + LK+ + Sbjct: 90 ATKATTRPNPFKPGEMMQVAAKPARNVVKVRPLKALKEMV 129 >gi|91205550|ref|YP_537905.1| integration host factor beta-subunit [Rickettsia bellii RML369-C] gi|91069094|gb|ABE04816.1| Integration host factor beta-subunit [Rickettsia bellii RML369-C] Length = 88 Score = 58.4 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+ DL+ I K+ LS++D + V + N + +S I+I +F F ++ + Sbjct: 11 TKIDLINKIHKQLDYLSKEDVSDSVNLILNYLSNSLKEQNRIEIRNFGNFSIRTRK 66 >gi|225849333|ref|YP_002729497.1| integration host factor subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225643457|gb|ACN98507.1| integration host factor, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 90 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +SD+VK + ++ + K+ + V +F+++ + GE I+I TF V ++ + Sbjct: 1 MKKSDIVKILKEKYTNIDSKEIKKVVDAIFDKMIEGLASGEKIEIRKLGTFKVLKRKKPL 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 + ++ + V FK ILK+ Sbjct: 61 ------KGKKRVSYSKTVHFKPGKILKRA 83 >gi|257470624|ref|ZP_05634714.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans ATCC 49185] gi|317064830|ref|ZP_07929315.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690506|gb|EFS27341.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 90 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + +K + + ++ D+ + V N I D+ V +IK TF + ++ R Sbjct: 1 MDKLQFIKKYKENYEKRITNADAKKDVEAFLNLIEDNIVEAGSIKFKGVGTFSLLKRKPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSI 88 V N +T + + I P +V F + + Sbjct: 61 VISNPKTRERMTIYPLPIVKFIPTKV 86 >gi|317065089|ref|ZP_07929574.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690765|gb|EFS27600.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 91 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + + K+ ++ + + ++ +K TF V + Sbjct: 4 MNKREFAKT-YRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQP 62 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T + + + P+++V F+AS +K Sbjct: 63 RVISNPVTRERMTVYPKKIVRFRASKKIK 91 >gi|51473705|ref|YP_067462.1| integration host factor beta subunit [Rickettsia typhi str. Wilmington] gi|51460017|gb|AAU03980.1| integration host factor beta subunit [Rickettsia typhi str. Wilmington] Length = 80 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T++ L+ + + LS++D V + + + +S + I+I +F F ++++ Sbjct: 3 TKNYLIDKVHDKLNYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 58 >gi|15892680|ref|NP_360394.1| integration host factor beta-subunit [Rickettsia conorii str. Malish 7] gi|20137863|sp|Q92HL4|DBHL_RICCN RecName: Full=DNA-binding protein HU-like gi|15619852|gb|AAL03295.1| integration host factor beta-subunit [Rickettsia conorii str. Malish 7] Length = 80 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 IT++ L+ I + LS++D V + + + +S + + I+I +F F ++++ Sbjct: 2 ITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRK 58 >gi|34581629|ref|ZP_00143109.1| integration host factor beta-subunit [Rickettsia sibirica 246] gi|229586789|ref|YP_002845290.1| Integration host factor beta-subunit [Rickettsia africae ESF-5] gi|28263014|gb|EAA26518.1| integration host factor beta-subunit [Rickettsia sibirica 246] gi|228021839|gb|ACP53547.1| Integration host factor beta-subunit [Rickettsia africae ESF-5] Length = 80 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 IT++ L+ I + LS++D V + + + +S + + I+I +F F ++++ Sbjct: 2 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRK 58 >gi|330880309|gb|EGH14458.1| HU family DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 66 Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 25/65 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ + I++ + + + + L + D G I + V ++ +R Sbjct: 2 ALTKDQFIAVIAEAIDAPKNTTGKALEQLGQIVADQLGNGAEITLPGIGKLKVAERPART 61 Query: 64 GRNLQ 68 GR+ Sbjct: 62 GRHPS 66 >gi|257470887|ref|ZP_05634977.1| hypothetical protein FulcA4_16199 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 57.6 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + + K+ ++ + + ++ +K TF V + Sbjct: 1 MNKREFAKT-YRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILK 90 RV N T + + + P+++V F+AS +K Sbjct: 60 RVISNPVTRERMTVYPKKIVRFRASKKIK 88 >gi|257470369|ref|ZP_05634460.1| hypothetical protein FulcA4_13577 [Fusobacterium ulcerans ATCC 49185] Length = 94 Score = 57.6 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + DLVK + + + +D+ + + + ++ +K F + + +V Sbjct: 1 MNKKDLVKIYKDKSKMENARDALADINDFIETLKKAILKDGTVKFHDNGIFEILVRKPKV 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N T + + I P++ V F+ S K+ + + Sbjct: 61 ISNPSTRELITIYPKKTVRFRMSKGTKEGMNN 92 >gi|255961253|ref|YP_003097811.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|162809323|dbj|BAF95568.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 110 Score = 57.6 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 19/108 (17%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS-- 61 + + +L+KSI++ S + F + N + + E + +SS F +K + + Sbjct: 1 MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAHT 60 Query: 62 --------------RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + G+ +T + +KI + VV FK S +K + Sbjct: 61 TPETKFIINKQTGKKTGK--RTGKNLKIPAKTVVSFKMSKPIKDEVKK 106 >gi|157828573|ref|YP_001494815.1| integration host factor beta-subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933287|ref|YP_001650076.1| hypothetical protein RrIowa_0832 [Rickettsia rickettsii str. Iowa] gi|238651133|ref|YP_002916075.1| integration host factor beta-subunit [Rickettsia peacockii str. Rustic] gi|166214917|sp|O68451|DBHL_RICRS RecName: Full=DNA-binding protein HU-like gi|157801054|gb|ABV76307.1| integration host factor beta-subunit [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908374|gb|ABY72670.1| hypothetical protein RrIowa_0832 [Rickettsia rickettsii str. Iowa] gi|238625231|gb|ACR47937.1| integration host factor beta-subunit [Rickettsia peacockii str. Rustic] Length = 80 Score = 57.6 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 IT++ L+ I + LS++D V + + + +S + + I+I +F F ++++ Sbjct: 2 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKQQKRIEIRNFGNFSIRKRK 58 >gi|257470392|ref|ZP_05634483.1| hypothetical protein FulcA4_13692 [Fusobacterium ulcerans ATCC 49185] Length = 93 Score = 57.2 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + + ++ + D R + I ++ + IK TF + ++ Sbjct: 1 MNKRRFA-KVYRDLSNEKIDINRALKEIENFLKTIEEALIADGKIKFIEKGTFEILERKP 59 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R+ N T + + I P++ V F +S L K+ Sbjct: 60 RIISNPLTRELMTIYPKKSVKFTSSKKLNKK 90 >gi|154492265|ref|ZP_02031891.1| hypothetical protein PARMER_01899 [Parabacteroides merdae ATCC 43184] gi|154087490|gb|EDN86535.1| hypothetical protein PARMER_01899 [Parabacteroides merdae ATCC 43184] Length = 384 Score = 57.2 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ + DL +++ G + S RF+ + + + +K+ TF + Sbjct: 1 MNNRLAIQDLAGLLAEYTGKDKNSSERFLREFIAVVSEGVYTDKLVKVKGLGTFKIIPVE 60 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R ++ T + I F L++ + Sbjct: 61 KRESIHVNTGERFVIPEHYKFSFLPDKELRELVNK 95 >gi|99036035|ref|ZP_01315073.1| hypothetical protein Wendoof_01000090 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 92 Score = 57.2 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+SD++ ++K L + V F + + ++I F +F V+ Sbjct: 3 TKSDIIARVAKRHPFLDKVVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYN 58 >gi|157964585|ref|YP_001499409.1| integration host factor beta-subunit [Rickettsia massiliae MTU5] gi|157844361|gb|ABV84862.1| Integration host factor beta-subunit [Rickettsia massiliae MTU5] Length = 81 Score = 57.2 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 IT++ L+ I + LS++D V + + + +S + I+I +F F ++++ Sbjct: 3 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKEQKRIEIRNFGNFSIRKRK 59 >gi|255690919|ref|ZP_05414594.1| putative non-specific DNA-binding protein HU-1 [Bacteroides finegoldii DSM 17565] gi|260623561|gb|EEX46432.1| putative non-specific DNA-binding protein HU-1 [Bacteroides finegoldii DSM 17565] Length = 137 Score = 57.2 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---KGSR 62 T++ V+ ++ + LS+ D+ + +T + I G + + F +F + K + Sbjct: 34 TKA-FVEYLADKNNLSKGDAYKNLTMVLEGIEAVLKNGNILNLDDFGSFSLNGSFCKDKQ 92 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 G N + + ++I + VVFKA LKKRI Sbjct: 93 PGENHR-AESIEI---KNVVFKAEKQLKKRIA 120 >gi|331007234|ref|ZP_08330441.1| putative DNA-binding protein HU [gamma proteobacterium IMCC1989] gi|330418950|gb|EGG93409.1| putative DNA-binding protein HU [gamma proteobacterium IMCC1989] Length = 121 Score = 57.2 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGSR 62 T++ +V I++ L++K + L + + + GE + + +K +R Sbjct: 25 TKTQMVAQIAENTELTKKQVQSVLDELSDLMEGHIKKRACGEFV-LPGLMKIVTVKKPAR 83 Query: 63 VGR---NLQTNQEVKI---DPRRVVVFKASSILKK 91 R N +E V + LK+ Sbjct: 84 KARKGINPFNGEETTFAAKPASTAVKIRPLKKLKE 118 >gi|42520895|ref|NP_966810.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410636|gb|AAS14744.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 92 Score = 57.2 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+SD++ ++K L + V F + + ++I F +F V+ Sbjct: 3 TKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYN 58 >gi|325989777|ref|YP_004249476.1| Histone-like DNA-binding superfamily protein HimA [Mycoplasma suis KI3806] gi|323574862|emb|CBZ40522.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration host factor (himA/hup_2) [Mycoplasma suis] Length = 92 Score = 56.8 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 IS E GL++ + + + + ++ R G N T + Sbjct: 2 KISGETGLTKDQIDSVLKAYQAITIAEMKEQGEVNVLEIGKIKISRRPERKGVNFMTKEP 61 Query: 73 VKIDPRRVVVFKASSILKKRIMDD 96 + I V F S LK+ + Sbjct: 62 MVIPAANVAKFSFSKKLKEAASES 85 >gi|58698449|ref|ZP_00373358.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225630819|ref|YP_002727610.1| DNA-binding protein, HU family [Wolbachia sp. wRi] gi|58535041|gb|EAL59131.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Drosophila ananassae] gi|225592800|gb|ACN95819.1| DNA-binding protein, HU family [Wolbachia sp. wRi] Length = 92 Score = 56.8 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+SD++ ++K L + V F + + ++I F +F V+ Sbjct: 3 TKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYN 58 >gi|254785041|ref|YP_003072469.1| DNA-binding protein BpH2 [Teredinibacter turnerae T7901] gi|237683728|gb|ACR10992.1| DNA-binding protein BpH2 [Teredinibacter turnerae T7901] Length = 147 Score = 56.8 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 10/94 (10%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGSRV 63 ++ ++ I++ LSRK T + L + I + GE + + V++K +R Sbjct: 52 KTQILNQIAENTELSRKQVTAVLDELSDIIEGHVKKRSCGEFV-MPGLFKIVVQKKPARK 110 Query: 64 GR---NLQTNQEVKI---DPRRVVVFKASSILKK 91 R N T +E V + LK+ Sbjct: 111 ARKGINPFTGEETVFAAKPASNAVKIRPLKKLKE 144 >gi|253584117|ref|ZP_04861315.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834689|gb|EES63252.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 56.8 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K SR K++ + +N I + + + ++ F K+ +R Sbjct: 1 MTEKEFI-KFYKRRNFSRNHKEAKEKIDLFWNAILKALEEDGKVVLKNWGRFEKKEVKAR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + N+ V + ++ + F+ + L+ + Sbjct: 60 KIVIPKMNEAVITEAKKKIRFRTGTGLQDAVNG 92 >gi|257470623|ref|ZP_05634713.1| histone family protein DNA-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317064829|ref|ZP_07929314.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690505|gb|EFS27340.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 101 Score = 56.8 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ V + + +S +GE +K + F +K R L+T +++ I R + F Sbjct: 21 EAKEKVNIFWKTVKESLEKGEKVKFKDWGNFEMKDVRPRRIIELKTKRDMTIPGSRKMKF 80 Query: 84 KASSILKKRIMDDMRGRKCN 103 + L K I + + K + Sbjct: 81 SSGKGLIKSINNKIEEGKID 100 >gi|157827266|ref|YP_001496330.1| integration host factor beta-subunit [Rickettsia bellii OSU 85-389] gi|157802570|gb|ABV79293.1| Integration host factor beta-subunit [Rickettsia bellii OSU 85-389] Length = 88 Score = 56.8 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+ DL+ I K+ LS++D + V + N + +S I+I +F F ++ + Sbjct: 11 TKIDLINKIHKQLDYLSKEDVSDSVNLILNYLSNSLKEQNCIEIRNFGNFSIRTRK 66 >gi|160872720|ref|ZP_02062852.1| DNA-binding protein BpH2 [Rickettsiella grylli] gi|159121519|gb|EDP46857.1| DNA-binding protein BpH2 [Rickettsiella grylli] Length = 129 Score = 56.8 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK--- 59 K+ T+++L++ + + L +K + TL + G A V +K Sbjct: 33 KSFTKTELLQCLVESTELPKKKIAEVLETLQMIMHAHVKAGCAFAHPGLYKITVVKKPAT 92 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + R+VV K LK + Sbjct: 93 KARKGINPFTGEPTTFKAKPARKVVKIKPLKKLKAAV 129 >gi|190571428|ref|YP_001975786.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018826|ref|ZP_03334634.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357700|emb|CAQ55149.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995777|gb|EEB56417.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 92 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Query: 6 TRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 T+SD++ ++K+ L + V + F ++ ++I F +F ++ + Sbjct: 3 TKSDIIAKVAKKNLLLDKVIIAAIVDSFFRVFSNTLKYHNRVEIRGFGSFSIRSYNLKEA 62 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 NL T+Q+V F++S L I + Sbjct: 63 SNL-TSQKVAKHQYFKTYFRSSKKLSLLINE 92 >gi|85057472|ref|YP_456388.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] gi|84789577|gb|ABC65309.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma AYWB] Length = 110 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 15/106 (14%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGSRV 63 + + +L+KSI++ S + F + N + + E + +SS F +K + + + Sbjct: 1 MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAHI 60 Query: 64 G------RNLQTNQE--------VKIDPRRVVVFKASSILKKRIMD 95 N QT ++ +KI + VV FK S +K + Sbjct: 61 TPETKFIINKQTGKKTVKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 106 >gi|192361184|ref|YP_001982926.1| DNA-binding protein HU family [Cellvibrio japonicus Ueda107] gi|190687349|gb|ACE85027.1| DNA-binding protein HU family [Cellvibrio japonicus Ueda107] Length = 159 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 10/95 (10%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK--- 59 +S +V+ I LS+K + L N I + GE + + +K Sbjct: 63 NKSQIVQQIVDATELSKKQVQAVLDELSNVIEGHIKKKGVGEFV-LPGLLKITTVKKPAT 121 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T +EV V +A LK+ Sbjct: 122 KARKGINPFTGEEVTFKAKPASTSVKVRALKKLKE 156 >gi|317064600|ref|ZP_07929085.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690276|gb|EFS27111.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFV---TTLFNEICDSAVRGEAIKISSFATFHVKQK 59 K + + + ++ + D R + I ++ + IK TF + ++ Sbjct: 2 KAVNKRRFA-KVYRDLSNEKIDINRALKEIENFLKTIEEALIADGKIKFIEKGTFEILER 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R+ N T + + I P++ V F +S L K+ Sbjct: 61 KPRIISNPLTRELMTIYPKKSVKFTSSKKLNKK 93 >gi|304312892|ref|YP_003812490.1| hypothetical protein HDN1F_32740 [gamma proteobacterium HdN1] gi|301798625|emb|CBL46857.1| Hypothetical protein HDN1F_32740 [gamma proteobacterium HdN1] Length = 153 Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 8/93 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQKG---S 61 ++ ++ I++ GL++K + L + I +G + V K + Sbjct: 58 KTQILSEIAENTGLAKKQVQGVLDELNSLIARHIGKKGVGQFTVPGLMKITVVNKPATRA 117 Query: 62 RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 R G N T +E R VV + LK Sbjct: 118 RKGINPFTGEETTFKAKPARNVVKVRPLKKLKD 150 >gi|157825821|ref|YP_001493541.1| integration host factor beta-subunit [Rickettsia akari str. Hartford] gi|157799779|gb|ABV75033.1| Integration host factor beta-subunit [Rickettsia akari str. Hartford] Length = 82 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +T++ L+ + ++ L+++D V + + + S E I+I +F F ++++ Sbjct: 2 VTKNYLIDKVHEKLNYLAKEDVKDSVDLILDYLSRSLKEQERIEIRNFCNFSIRKRK 58 >gi|330870883|gb|EGH05592.1| hypothetical protein PSYAE_27258 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 46 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%) Query: 52 ATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 V ++ +R GRN T ++I ++VV F ++ +L I Sbjct: 2 GKLKVAERPARTGRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 46 >gi|257470393|ref|ZP_05634484.1| hypothetical protein FulcA4_13697 [Fusobacterium ulcerans ATCC 49185] gi|317064601|ref|ZP_07929086.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690277|gb|EFS27112.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 125 Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T ++ +K + GL S+K++ + + + + + + ++ F K SR Sbjct: 28 MTETEFIKFYKERNGLKSKKEAKEKIDNFWKALFKAIDEDKKVVFKNWGIFEEKDVKSRK 87 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + +E+ P++V+ F+A LK + Sbjct: 88 IVIPKHPKEIYTQPKKVLKFRAGEGLKNSV 117 >gi|162456561|ref|YP_001618928.1| histone-like protein [Sorangium cellulosum 'So ce 56'] gi|161167143|emb|CAN98448.1| histone-like protein [Sorangium cellulosum 'So ce 56'] Length = 111 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 8/100 (8%) Query: 2 SKTITRSDLVKSI--SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 S ++++S L+ ++ + E +SRK + +L + + + FA F V +K Sbjct: 11 STSLSKSALINAVVEANENEISRKQVKAILESLTDIAYKELKKNGIFTMPGFAKFRVVKK 70 Query: 60 ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T Q + + V + +K + Sbjct: 71 PATKAREGINPFTKQPMTFAAKPASKSVRARPIKAIKDSL 110 >gi|269958577|ref|YP_003328364.1| putative integration host factor [Anaplasma centrale str. Israel] gi|269848406|gb|ACZ49050.1| putative integration host factor [Anaplasma centrale str. Israel] Length = 91 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 7 RSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV-G 64 +SDL++ +S+ L ++ V F+ I G +++ F F + + G Sbjct: 4 KSDLIQRVSRRNPSLGEAVVSQIVGIFFSSIVSCISSGHRVELRGFGAFSTRHYVLKDHG 63 Query: 65 RN---LQTNQEVKIDPRRVVVFKASSILKKRI 93 N + + V F+ S L K + Sbjct: 64 LNSRLPK-------ATYKRVYFRPSEKLVKAV 88 >gi|254362481|ref|ZP_04978589.1| DNA-binding protein HU [Mannheimia haemolytica PHL213] gi|153094073|gb|EDN74985.1| DNA-binding protein HU [Mannheimia haemolytica PHL213] Length = 37 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 ++ +R GRN +T +E+KI +V F + LK + Sbjct: 1 ERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK 37 >gi|254281566|ref|ZP_04956534.1| bacterial DNA-binding protein [gamma proteobacterium NOR51-B] gi|219677769|gb|EED34118.1| bacterial DNA-binding protein [gamma proteobacterium NOR51-B] Length = 139 Score = 55.7 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK 59 + +T++ +V SI++ GL++K + L + I S + GE + +K Sbjct: 39 EKMTKTQIVGSIAESTGLNKKQVGDVLGELESLIQGSIKKRAVGE-FTLPGLMKVTTVRK 97 Query: 60 ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T +E V + +K+ Sbjct: 98 PAVKARKGINPFTGEETMFKAKPASTAVKIRPLKKMKE 135 >gi|224024933|ref|ZP_03643299.1| hypothetical protein BACCOPRO_01664 [Bacteroides coprophilus DSM 18228] gi|224018169|gb|EEF76167.1| hypothetical protein BACCOPRO_01664 [Bacteroides coprophilus DSM 18228] Length = 385 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 16/95 (16%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M++ +T L + ++ + + D+ FV T I ++ + + +K+ TF + Sbjct: 1 MNEKVTLQALAEQLASRHQMEQADAEAFVQTFVALIEEALQQEKYVKVKGLGTFKL---- 56 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 +++ V F + L+ I Sbjct: 57 ------------IEMSGHNRVSFVPEASLRDLINK 79 >gi|253584285|ref|ZP_04861483.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834857|gb|EES63420.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 96 Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 K++ + +N + + E++ + ++ TF K+ +R T + + ++V+ Sbjct: 20 KEAKEKIDLFWNVLLKALEE-ESVILKNWGTFEKKEVKARKVIIPNTEKAITTKAKKVIK 78 Query: 83 FKASSILKKRIMD 95 F+A L+ + Sbjct: 79 FRAGKGLRNIVNG 91 >gi|282858797|ref|ZP_06267943.1| hypothetical protein HMPREF0648_1395 [Prevotella bivia JCVIHMP010] gi|282588425|gb|EFB93584.1| hypothetical protein HMPREF0648_1395 [Prevotella bivia JCVIHMP010] Length = 100 Score = 54.9 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR-NL 67 +L++ + GLS++ + + +L I ++ G+ I + +F +F ++ Sbjct: 12 ELLQKAKERSGLSKEVLRQSLHSLLGVISEALDDGKCIVLDNFGSFDLRTVKEHTVTPPP 71 Query: 68 QTNQEVKIDPRRVVVFKASS 87 N+ + + +VV FK Sbjct: 72 PNNKPIVVPEHQVVRFKPYK 91 >gi|257468326|ref|ZP_05632422.1| hypothetical protein FulcA4_03244 [Fusobacterium ulcerans ATCC 49185] gi|317062603|ref|ZP_07927088.1| ABC transporter [Fusobacterium ulcerans ATCC 49185] gi|313688279|gb|EFS25114.1| ABC transporter [Fusobacterium ulcerans ATCC 49185] Length = 103 Score = 54.9 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + + L S +++ + + + + D E + I + F K+ R Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLAEEEKVIIKDWGIFEKKEVKPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 NL T + + + ++V+ FK + ++ + Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92 >gi|237742453|ref|ZP_04572934.1| predicted protein [Fusobacterium sp. 4_1_13] gi|229430101|gb|EEO40313.1| predicted protein [Fusobacterium sp. 4_1_13] Length = 118 Score = 54.9 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 6/112 (5%) Query: 2 SKTITRSD----LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFH 55 ++ +++ +K +K S +++ I ++ E I + +F Sbjct: 6 GDSMIKNEGYIIFLKEYAKISNFSIEEAEELTKNFIEAIRNTLSNYEIQNILLKRLGSFI 65 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 V ++ R G + V ++ + FK S K++I ++++ RK V Sbjct: 66 VHEQKERSGTLFGKKEVVTFPAKKAIKFKFSRNAKEKIEENIKKRKKKNGGV 117 >gi|260588231|ref|ZP_05854144.1| putative DNA-binding protein HU-alpha [Blautia hansenii DSM 20583] gi|260541369|gb|EEX21938.1| putative DNA-binding protein HU-alpha [Blautia hansenii DSM 20583] Length = 117 Score = 54.9 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA---VRGEAIKISSFATFHVKQK-- 59 +T ++VK +++ G ++K+ + + + + +++I F +V + Sbjct: 22 MTTKEMVKGVAELTGKTQKEVREVLDGIEDVVMAQVGQATEDNSVEIRLFNGLYVTSEFV 81 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 RN +T + + + V K + LK Sbjct: 82 APHTARNPRTGETFTAEGKNRVKAKIGAALKNAANQ 117 >gi|118580695|ref|YP_901945.1| integration host factor subunit alpha [Pelobacter propionicus DSM 2379] gi|118503405|gb|ABK99887.1| integration host factor, alpha subunit [Pelobacter propionicus DSM 2379] Length = 57 Score = 54.9 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 29/48 (60%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52 +T++D+V+ I ++ G ++KD + T+F+ + + GE +KI+ Sbjct: 7 VTKADIVERIYEKTGFAKKDCADLLETVFDIMKATLEAGEKLKIAGRG 54 >gi|257469296|ref|ZP_05633390.1| hypothetical protein FulcA4_08142 [Fusobacterium ulcerans ATCC 49185] gi|317063544|ref|ZP_07928029.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689220|gb|EFS26055.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 103 Score = 54.9 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + + L S +++ + + + + D E + I + F K+ R Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKKEVKPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 NL T + + + ++V+ FK + ++ + Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92 >gi|257467762|ref|ZP_05631858.1| hypothetical protein FulcA4_00412 [Fusobacterium ulcerans ATCC 49185] gi|317062053|ref|ZP_07926538.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313687729|gb|EFS24564.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 103 Score = 54.9 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + + L S +++ + + + + D E + I + F ++ R Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKREVKPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 NL T + + + ++V+ F+ + ++ + Sbjct: 61 ILNLATREMMVTEEKKVIKFRPRMKMIDKVNE 92 >gi|253582641|ref|ZP_04859862.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835511|gb|EES64051.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 54.9 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T ++ + K S+ K++ + +N + + E + + ++ TF K+ R Sbjct: 1 MTEAEFI-RYYKRRNKSKNYKEAKEKIDLFWNSLLKALGEAEKVSLKNWGTFEKKEVKPR 59 Query: 63 VGRNLQTNQEVKI-DPRRVVVFKASSILKKRIMD 95 ++V I ++V+ FKA + L+ + + Sbjct: 60 RIVIP-NMEKVTITKAKKVIKFKAGAGLRNVVNE 92 >gi|90020558|ref|YP_526385.1| DNA-binding protein HU [Saccharophagus degradans 2-40] gi|89950158|gb|ABD80173.1| histone-like DNA-binding protein [Saccharophagus degradans 2-40] Length = 135 Score = 54.5 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 8/93 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQ--KGS 61 ++ ++ I++ L++K + L + I + GE + F VK+ + + Sbjct: 40 KTQMLTQIAENTELTKKQVQSVLDELTDIIEGHVKKRACGEFVMPGLFKILTVKKPARKA 99 Query: 62 RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 R G N T +E V + LK+ Sbjct: 100 RKGINPFTGEETTFAAKPASIQVKIRPLKKLKE 132 >gi|330952800|gb|EGH53060.1| hypothetical protein PSYCIT7_15803 [Pseudomonas syringae Cit 7] Length = 43 Score = 54.5 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 21/42 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46 + +S+L+ +I+ + + + R + + + + G+++ Sbjct: 1 MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSV 42 >gi|171913744|ref|ZP_02929214.1| DNA-binding protein HU, putative [Verrucomicrobium spinosum DSM 4136] Length = 109 Score = 54.5 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK---G 60 ++ +++ I+++ LSRK + + +L I + GE + + +K Sbjct: 14 KTQILEQITQDTELSRKQVSAVLDSLTEIISSHLKKNSVGEFV-LPGLLQIKTVRKPAVK 72 Query: 61 SRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + VV + LK + Sbjct: 73 ARKGINPFTKEPTVFKAKPASTVVKVRPLKKLKDMVA 109 >gi|154495134|ref|ZP_02034139.1| hypothetical protein PARMER_04181 [Parabacteroides merdae ATCC 43184] gi|154085684|gb|EDN84729.1| hypothetical protein PARMER_04181 [Parabacteroides merdae ATCC 43184] Length = 128 Score = 54.5 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + I+ S + V L I ++ G + I TF V + +R + Sbjct: 37 LAEQIAGSSTFSYGEVKGLVENLTILIAEALEGGNTVTIDGLGTFSVTARPNREVEDP-- 94 Query: 70 NQEVKIDPR----RVVVFKASSILKKRI 93 +KI + + FK S LK+R+ Sbjct: 95 ---LKIRAESIKLKGIGFKPSPKLKERL 119 >gi|157093381|gb|ABV22345.1| histone-like protein [Noctiluca scintillans] Length = 101 Score = 54.5 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK-- 59 + T+T S++ +S+++ GL K+ V + + + K++ +K+K Sbjct: 3 ATTLTASNVYQSVAETVGLKPKEVKGAVEAVMGVASGELKKHGSFKLAGVLALKLKKKPA 62 Query: 60 -GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + + V A LK + Sbjct: 63 TPARKGVNPFTKEPCVFKAKPASKTVRVLAMKKLKDAVN 101 >gi|256821889|ref|YP_003145852.1| histone family protein DNA-binding protein [Kangiella koreensis DSM 16069] gi|256795428|gb|ACV26084.1| histone family protein DNA-binding protein [Kangiella koreensis DSM 16069] Length = 113 Score = 54.5 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK--- 59 T++ ++ I+ + GL++KD + + L I + GE + +K Sbjct: 17 TKTQILNEIAAQTGLTKKDVSAVLDELGVVIERHVKKRAVGE-FTLPGLLKISTVKKPAV 75 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T +E V + LK + Sbjct: 76 KARKGINPFTGEETMFKAKPASIAVKVRPLKKLKDMVQ 113 >gi|87311600|ref|ZP_01093718.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645] gi|87285722|gb|EAQ77638.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645] Length = 113 Score = 54.1 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 10/101 (9%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQKG 60 K +T+++L+ +I++E G+++KD + + +L N++ S + AI + K+ Sbjct: 13 KPLTKTELLNNIAEETGIAKKDVSIVLDSLQNQVKKSLGKTGAGAISLPGLIKIEKKKVP 72 Query: 61 SRVGR----NL-QTNQEVKIDPR---RVVVFKASSILKKRI 93 +R + N + + + + + V +A LK + Sbjct: 73 ARPAKKGVPNPFKPGELMDVPAKPASVKVKIRALKNLKDMV 113 >gi|317063682|ref|ZP_07928167.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689358|gb|EFS26193.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 91 Score = 54.1 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + + K K LS D+ +T + I ++ ++ F + + R Sbjct: 4 MNKRKMAKLYVKMSPEKLSITDAIEEITEVLETIKEAIALDGEVRFLKRGAFEILTRQPR 63 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T + + + P++ V F+AS +K Sbjct: 64 VVSNPVTRERMTVYPKKTVRFRASKNMK 91 >gi|330884569|gb|EGH18718.1| single-stranded binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 53 Score = 54.1 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%) Query: 27 RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 + + L + + D G I + V ++ +R R+ T ++I ++ Sbjct: 1 KALEQLGHIVADQLESGAEITLPGIGKLKVAERPARTVRHPSTGAAIEIAAKK 53 >gi|253583722|ref|ZP_04860920.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834294|gb|EES62857.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 103 Score = 54.1 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + + L S +++ + + + + D E + I + F K+ R Sbjct: 1 MTEKEFLILYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKKEVKPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 NL T + + + ++V+ FK + ++ + Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92 >gi|94501846|ref|ZP_01308357.1| DNA-binding protein HU, putative [Oceanobacter sp. RED65] gi|94425979|gb|EAT10976.1| DNA-binding protein HU, putative [Oceanobacter sp. RED65] Length = 139 Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQ---K 59 ++ ++ I++ L++K + L + I + GE + + + K Sbjct: 43 NKTQILTEIAENTELTKKQVQAVLDNLGDVIERHVKKRAVGEFV-LPGLLKIQAVKKPAK 101 Query: 60 GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T +E V + LK+ Sbjct: 102 KARKGINPFTGEETVFKAKPASIAVKIRPLKKLKE 136 >gi|257469438|ref|ZP_05633530.1| hypothetical protein FulcA4_08878 [Fusobacterium ulcerans ATCC 49185] Length = 88 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 5 ITRSDLVKSISKEFG--LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 + + + K K LS D+ +T + I ++ ++ F + + R Sbjct: 1 MNKRKMAKLYVKMSPEKLSITDAIEEITEVLETIKEAIALDGEVRFLKRGAFEILTRQPR 60 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 V N T + + + P++ V F+AS +K Sbjct: 61 VVSNPVTRERMTVYPKKTVRFRASKNMK 88 >gi|146340621|ref|YP_001205669.1| DNA-binding protein HU [Bradyrhizobium sp. ORS278] gi|146193427|emb|CAL77443.1| DNA-binding protein HU [Bradyrhizobium sp. ORS278] Length = 100 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS---FATFHVK 57 M+ +++S L++ I+ LS++D + TL + + + F Sbjct: 1 MATQLSKSQLIEKIATTTELSKRDVKNVMETLTDVGHKELKKNGVFLVPGFAKFVVVKKA 60 Query: 58 QKGSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T +E+ R++V + K + Sbjct: 61 AVKARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAVA 100 >gi|330962997|gb|EGH63257.1| single-stranded binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 63 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 29 VTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSI 88 + L + D G I + V ++ +R GRN T ++I ++ + F + + Sbjct: 1 LEQLGQIVADQLESGAEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKAIKFVPAKV 60 Query: 89 LKK 91 L Sbjct: 61 LND 63 >gi|292492068|ref|YP_003527507.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] gi|291580663|gb|ADE15120.1| histone family protein DNA-binding protein [Nitrosococcus halophilus Nc4] Length = 147 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFATFHVKQKGSR 62 +T++ L +I++ LS+KD L I + + +K +R Sbjct: 48 MTKTQLYATIAENTNLSKKDVVAVFDELNTLINRHIKKRSAGVFTLPGLLKITTVKKPAR 107 Query: 63 VGR----NL-QTNQEVKI---DPRRVVVFKASSILKKRIM 94 + N + + + + R VV + LK + Sbjct: 108 KAQKNVPNPFKPGETMDVAAKPARTVVKVRPLKKLKDMVA 147 >gi|289548471|ref|YP_003473459.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] gi|289182088|gb|ADC89332.1| histone family protein DNA-binding protein [Thermocrinis albus DSM 14484] Length = 95 Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 7/100 (7%) Query: 5 ITRSDLVKS-ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +TR +V+ + G S + + + EI + + ++I TF + + R Sbjct: 1 MTRRRVVEKFLQNNPGFSPTLVGKALNLMLEEIICALEKEGVVRIQGLGTFRLDRTAVRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R + R+ V FK S +L + + K Sbjct: 61 LR----GKVY--PSRKTVRFKPSKLLLSALKMGTKSNKIK 94 >gi|119504254|ref|ZP_01626334.1| DNA-binding protein HU, putative [marine gamma proteobacterium HTCC2080] gi|119459762|gb|EAW40857.1| DNA-binding protein HU, putative [marine gamma proteobacterium HTCC2080] Length = 141 Score = 53.8 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 20/104 (19%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------- 54 S +T++ +V +I+ GL++K + + + D+ V G +IK F Sbjct: 40 STKMTKTQIVGTIADNTGLTKKQVSDVMQQM-----DALVEG-SIKKRGAGEFTIPGMMK 93 Query: 55 --HVKQ--KGSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 V++ +R G N T +E V + +K+ Sbjct: 94 ITTVRKPAVKARKGINPFTGEETMFKAKPASTAVKIRPLKKMKE 137 >gi|253582644|ref|ZP_04859865.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835514|gb|EES64054.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 77 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRR 79 ++ K++ + + + ++ + IK TF V +K R N T + ++I PR+ Sbjct: 6 INIKEALKEIDIFTKTVEEALLIKGYIKFIRRGTFMVLKKKPRTVSNPSTKELMRIYPRK 65 Query: 80 VVVFKASSIL 89 V FK S L Sbjct: 66 TVKFKISKKL 75 >gi|253581507|ref|ZP_04858732.1| methionine import ATP-binding protein metN [Fusobacterium varium ATCC 27725] gi|251836577|gb|EES65112.1| methionine import ATP-binding protein metN [Fusobacterium varium ATCC 27725] Length = 103 Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + + + L S +++ + + + + D + + I + F K+ R Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEDKVIIKDWGIFEKKEVKPRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 NL T + + + ++V+ FK + ++ + Sbjct: 61 ILNLATRKMMMTEEKKVIKFKPRMKMIDKVNE 92 >gi|260220519|emb|CBA28137.1| hypothetical protein Csp_A05780 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 65 Score = 53.0 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 36 ICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 + D+ +G I++ F K + + V RN +T ++++ +VV FK L+ Sbjct: 1 MTDALKKGRRIEVRKFGILQTKVRSAVVYRNSRTGEKLQKRQSKVVHFKEGKNLR 55 >gi|241762720|ref|ZP_04760784.1| hypothetical protein AcdelDRAFT_0015 [Acidovorax delafieldii 2AN] gi|241368139|gb|EER62331.1| hypothetical protein AcdelDRAFT_0015 [Acidovorax delafieldii 2AN] Length = 64 Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 22/44 (50%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46 + RSDL+ ++ + GL + + TL + I ++ G+ + Sbjct: 21 NKMNRSDLIDTLHAKNGLVKMQCDAVLNTLIDTIQNAVKNGDTV 64 >gi|256845789|ref|ZP_05551247.1| predicted protein [Fusobacterium sp. 3_1_36A2] gi|256719348|gb|EEU32903.1| predicted protein [Fusobacterium sp. 3_1_36A2] Length = 111 Score = 52.2 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 6/109 (5%) Query: 5 ITRSD----LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSFATFHVKQ 58 + +++ +K +K S + + I ++ E I + +F V + Sbjct: 2 MIKNEGYNIFLKEYAKISNFSIEKAEELTKNFIEAIRNTLSNYEIQNILLKRLGSFIVHE 61 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 + R G + V ++ + FK S K++I ++++ RK V Sbjct: 62 QKERNGTLFGKKEVVTFPAKKAIKFKFSRNAKEKIEENIKERKRKNGGV 110 >gi|162448296|ref|YP_001610663.1| hypothetical protein sce0027 [Sorangium cellulosum 'So ce 56'] gi|161158878|emb|CAN90183.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 102 Score = 52.2 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 8/98 (8%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQK 59 S +T++ ++ +++ L +K + L + G + + K+ Sbjct: 4 SNKLTKAQMIVGLAEATHLDKKSVASVLDALGELVKKELGPEGPGEVTVPGLVKIKAKEI 63 Query: 60 GS---RVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 + R G N T Q + I R + LK Sbjct: 64 PATQDREGINPFTKQPMTIKGKPASRKLRAAPVKALKD 101 >gi|329954720|ref|ZP_08295780.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328527261|gb|EGF54265.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 164 Score = 52.2 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 16/116 (13%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T+T + + ++ LS D +T + + G ++ I F F + Sbjct: 30 MGQTMTLESIAYEMKEKSSLSYGDIKSVLTNFVEAMRTALYNGHSVNIQEFGVFSLSAHS 89 Query: 61 SRVG-------RNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 + V +N++T VKI F+ASS +K + G K DV + Sbjct: 90 AGVADVKDCTSKNIRT---VKI------NFRASSSVKPNLTSTRAGEKIEFLDVQA 136 >gi|198274638|ref|ZP_03207170.1| hypothetical protein BACPLE_00790 [Bacteroides plebeius DSM 17135] gi|198272085|gb|EDY96354.1| hypothetical protein BACPLE_00790 [Bacteroides plebeius DSM 17135] Length = 381 Score = 52.2 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQ 58 M+ IT +LV +++ LS+ D+ F + I ++ R + +K+ TF + Sbjct: 1 MNDKITLHELVDLFARKSQLSQADAALFAKEFLSLIEEALARDKYVKVKGLGTFKLITVD 60 Query: 59 KGSRVGRN-LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 N +T V F + LK + Sbjct: 61 ATEETASNGPETTDS---QSHTRVSFIPETGLKDLVNK 95 >gi|303271375|ref|XP_003055049.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463023|gb|EEH60301.1| predicted protein [Micromonas pusilla CCMP1545] Length = 132 Score = 52.2 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 17 EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKID 76 + +++ + + L I S G+ + F +F K SR+ + + ++++ Sbjct: 54 KAAITKAQAEAALEALIGGIKSSVASGQRVTFQGFGSFTPVTKASRMVQTPK-GVKMQLP 112 Query: 77 PRRVVVFKASSILKKRIMD 95 R+ + FK SS K + Sbjct: 113 ERKGLRFKISSEFKSAVQG 131 >gi|39938811|ref|NP_950577.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39938851|ref|NP_950617.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721920|dbj|BAD04410.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] gi|39721960|dbj|BAD04450.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M] Length = 96 Score = 51.8 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI-SSFATFHVKQKGSRV 63 +T+ +L+K I+ S + F + ++ E + + F +K + S + Sbjct: 1 MTKKELIKKIALSNKTSVTKTEEFYHIFEKTLIEAITNNEEVVLFPKIGKFKLKSRKSYI 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKR 92 GRN +T +++KI + VV FK S +K + Sbjct: 61 GRNPKTKKKLKIPKKTVVTFKLSKSIKDK 89 >gi|325297734|ref|YP_004257651.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324317287|gb|ADY35178.1| histone family protein DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 317 Score = 51.4 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 4/97 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+ IT +L++ +++ + D+ +F T F I ++ + +K+ TF + Sbjct: 1 MNDQITLQELIELLAQHHQIEHTDAEKFGRTFFALIGEALATDKYVKVKGLGTFKLID-- 58 Query: 61 SRVGRNLQTN--QEVKIDPRRVVVFKASSILKKRIMD 95 + V N+ T+ + + + + F + ++ + Sbjct: 59 ADVCENMGTDAEERIGMQNHLRISFTPDATIRDAVNK 95 >gi|298243053|ref|ZP_06966860.1| histone family protein DNA-binding protein [Ktedonobacter racemifer DSM 44963] gi|297556107|gb|EFH89971.1| histone family protein DNA-binding protein [Ktedonobacter racemifer DSM 44963] Length = 87 Score = 51.4 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 16/91 (17%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 MS+ I + D+ + ++ +T +V + + ++ GE++ + F F V+ Sbjct: 1 MSERIKKEDVARRLATRMDTDEATATAWVDGVIETLYEAFKAGESVTLPGFGGFFVR--- 57 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 + V F L+ Sbjct: 58 ------PE-------PKSWVFKFNPGQRLRA 75 >gi|269941613|emb|CBI50019.1| phage DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] Length = 109 Score = 51.4 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 46/108 (42%), Gaps = 12/108 (11%) Query: 1 MSKTITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNEICDSAVRGEAIKI----SSF 51 M+K + + DL+ + ++ +++KD+ + + + ++ + + ++F Sbjct: 1 MTK-LAKKDLINELQEKSRVRGLEITKKDAATLFSAFEDTMIEAIHAADEVGYDSFSTNF 59 Query: 52 ATFHVKQKGSRVGRNLQTNQEV--KIDPRRVVVFKASSILKKRIMDDM 97 TF + + + G + +E + V FK + +K ++ + Sbjct: 60 GTFKIVEVPEKSGVSRLGGEEKSWTSPAHKTVRFKLNKSVKDKLKAET 107 >gi|257469717|ref|ZP_05633809.1| hypothetical protein FulcA4_10275 [Fusobacterium ulcerans ATCC 49185] gi|317063949|ref|ZP_07928434.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689625|gb|EFS26460.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 99 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + +D +K K G +K + + + + + +K + F ++ R Sbjct: 1 MKEADFIKLYKKRSGDKDKKIVKEKIDRFWEMLFKALEEEKKVKFKDWGVFETREMKGRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + + + +P++ + F+A L I ++ Sbjct: 61 IIVPVSTEAIYTEPKKTIKFRAGKGLLDLINNE 93 >gi|253584114|ref|ZP_04861312.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834686|gb|EES63249.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 3/94 (3%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K+ LSR K+ + ++ I + + + + F K+ R Sbjct: 1 MTEKEFI-KFYKKRNLSRSYKEVKEKIDLFWDTILKALDEDGKVSLKDWGVFEKKEVAPR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + +E + F+ + LK + D Sbjct: 60 KIMTPRMEKERVTKAGEKISFRTGTGLKTLVNRD 93 >gi|257470534|ref|ZP_05634624.1| DNA-binding protein HU-beta [Fusobacterium ulcerans ATCC 49185] gi|317064741|ref|ZP_07929226.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690417|gb|EFS27252.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 95 Score = 51.1 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 5 ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + D +K GL +++ + T + + E + + F K+ SR Sbjct: 1 MKEKDFIKLYKNNRGLKNLEEAKEKIETFWTTLFTVLEEEEKVTFKGWGIFRKKEMNSRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKK 91 + + + P+ V+ F+A LK+ Sbjct: 61 VILPKNKKTIYTTPKTVIKFRAGKELKE 88 >gi|88705600|ref|ZP_01103310.1| histone-like protein [Congregibacter litoralis KT71] gi|88700113|gb|EAQ97222.1| histone-like protein [Congregibacter litoralis KT71] Length = 140 Score = 51.1 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK 59 + +T++ ++ SI++ GL++K +T L I S + GE + +K Sbjct: 40 EKMTKTQVMASIAESTGLTKKQVGDVMTELETLIERSIKKRAVGE-FTLPGLMKITTVKK 98 Query: 60 ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T +E V + +K+ Sbjct: 99 PAVKARKGINPFTGEETMFKAKPASVAVKVRPLKKMKE 136 >gi|260171450|ref|ZP_05757862.1| putative non-specific DNA-binding protein HU-1 [Bacteroides sp. D2] gi|315919765|ref|ZP_07916005.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693640|gb|EFS30475.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 137 Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-----QKG 60 T++ V+ ++ + +++ D+ R ++ + I G + + F +F + K Sbjct: 34 TKA-FVEYLADKNNITKGDAYRNLSMILEGIEAILKDGNILNLDDFGSFSLNGSFCEDKE 92 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 G N + + +++ + VVFKA LKK I Sbjct: 93 --PGENHR-AESIEV---KNVVFKAEKRLKKAI 119 >gi|58584319|ref|YP_197892.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418635|gb|AAW70650.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 92 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 6 TRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 T+S+++ ++K L R V F + + ++I F +F ++ Sbjct: 3 TKSNIIMKVAKRHPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIRSYN 58 >gi|254516714|ref|ZP_05128773.1| bacterial DNA-binding protein [gamma proteobacterium NOR5-3] gi|219675137|gb|EED31504.1| bacterial DNA-binding protein [gamma proteobacterium NOR5-3] Length = 139 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQK 59 + +T++ ++ SI++ GLS+K + L I S + GE + +K Sbjct: 39 EKMTKTQVLASIAESTGLSKKQVGDVMAELETLIERSVKKRAVGE-FTLPGLMKITTVKK 97 Query: 60 ---GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 +R G N T +E V + +K+ Sbjct: 98 PAVKARKGINPFTGEETMFKAKPASVAVKVRPLKKMKE 135 >gi|29349840|ref|NP_813343.1| putative non-specific DNA-binding protein HU-1 [Bacteroides thetaiotaomicron VPI-5482] gi|253569797|ref|ZP_04847206.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384106|ref|ZP_06993667.1| non-specific DNA-binding protein HU-1 [Bacteroides sp. 1_1_14] gi|29341751|gb|AAO79537.1| putative non-specific DNA-binding protein HU-1 [Bacteroides thetaiotaomicron VPI-5482] gi|251840178|gb|EES68260.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263710|gb|EFI06573.1| non-specific DNA-binding protein HU-1 [Bacteroides sp. 1_1_14] Length = 137 Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 26/100 (26%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--------- 56 T++ V+ ++ ++ LS+ ++ + ++ + + G + + F +F + Sbjct: 34 TKA-FVEYLATKYNLSKGEAYKSLSIVLEGMEAVLKDGNILNLDDFGSFSLNGNFCEDKE 92 Query: 57 ---KQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + + +++ + VVFKA LKKRI Sbjct: 93 PDENHRA----------ESIQV---KNVVFKADKNLKKRI 119 >gi|294666675|ref|ZP_06731912.1| Bacterial DNA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603581|gb|EFF46995.1| Bacterial DNA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 257 Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISS---FATFHVK 57 + ++++ LV I++ L+ KD + +L S +G + I T HV Sbjct: 158 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGAGSFTIPGMLKLTTVHVP 217 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 218 AKPKRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 255 >gi|88607135|ref|YP_504885.1| integration host factor, beta subunit [Anaplasma phagocytophilum HZ] gi|88598198|gb|ABD43668.1| integration host factor, beta subunit [Anaplasma phagocytophilum HZ] Length = 97 Score = 50.3 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 20/107 (18%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---KG 60 + RSDL++ I+++ L ++ + F I +++ F +F + K Sbjct: 1 MLRSDLIRRIARKNPTLGESVVSQILNVFFQSILQHMHDDSRVELRGFGSFASRSYVLKS 60 Query: 61 SRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 + + +V + F+ S L K + + + Sbjct: 61 A------------NVALGKVQYKRMYFRPSEKLIKAVNQPAHPKSGS 95 >gi|218258130|ref|ZP_03474532.1| hypothetical protein PRABACTJOHN_00186 [Parabacteroides johnsonii DSM 18315] gi|218225723|gb|EEC98373.1| hypothetical protein PRABACTJOHN_00186 [Parabacteroides johnsonii DSM 18315] Length = 146 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L IS + S D + L N + + +GE +K+ +F ++ G Sbjct: 38 ELCDLISAQSTASSGDVKLILDELVNVMRRNLGKGEVVKVGELGSFQLQ-----FG---S 89 Query: 69 TNQ-------EVKIDPRRVVVFKASSILKKRIMD 95 T +V I RR+V F+ +LK+ + + Sbjct: 90 TGTVTEKEFNQVLIKSRRIV-FRPGKLLKEAVKN 122 >gi|78048627|ref|YP_364802.1| DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037057|emb|CAJ24798.1| Bacterial DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 256 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISS---FATFHVK 57 + ++++ LV I++ L+ KD + +L S +G + I T HV Sbjct: 157 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVP 216 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 217 AKPKRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 254 >gi|297519827|ref|ZP_06938213.1| transcriptional regulator HU subunit beta [Escherichia coli OP50] Length = 29 Score = 49.9 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+ I +V F+A LK + Sbjct: 1 NPQTGKEITIAAAKVPSFRAGKALKDAVN 29 >gi|57867550|ref|YP_189186.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A] gi|57638208|gb|AAW54996.1| DNA-binding protein HU, putative [Staphylococcus epidermidis RP62A phage SP-beta] Length = 109 Score = 49.5 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 45/108 (41%), Gaps = 12/108 (11%) Query: 1 MSKTITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNEICDSAVRGEAIKI----SSF 51 M+K + + DL+ + + +++KD+ + + + ++ + + ++F Sbjct: 1 MTK-LAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNF 59 Query: 52 ATFHVKQKGSRVGRNLQTNQEV--KIDPRRVVVFKASSILKKRIMDDM 97 TF + + + G + +E + V FK + +K ++ + Sbjct: 60 GTFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAET 107 >gi|229164819|ref|ZP_04292643.1| DNA-binding protein HU [Bacillus cereus R309803] gi|228618643|gb|EEK75645.1| DNA-binding protein HU [Bacillus cereus R309803] Length = 52 Score = 49.5 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 26/45 (57%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49 + + ++VK+++++ LS K+ + +EI + GE +++S Sbjct: 4 MNKIEIVKNVAEKVELSHKNVAVSTQVVLDEITKALANGEKVRLS 48 >gi|294507599|ref|YP_003571657.1| hypothetical protein containing IHF-like DNA-binding domain [Salinibacter ruber M8] gi|294343927|emb|CBH24705.1| hypothetical protein containing IHF-like DNA-binding domain [Salinibacter ruber M8] Length = 83 Score = 49.1 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + + + + D G A+++ TF V+ + S G + PR VVF Sbjct: 21 AEDVIEAFTDVVQDQLDTGNAVEVPGLGTFSVEHRPS--GVQEEDGVRRLAPPRNEVVFT 78 Query: 85 A 85 Sbjct: 79 P 79 >gi|48696473|ref|YP_024515.1| putative integration host factor [Staphylococcus phage K] gi|66395088|ref|YP_240952.1| ORF147 [Staphylococcus phage G1] gi|37729167|gb|AAO47534.1| ORF85 [Staphylococcus phage K] gi|62637110|gb|AAX92221.1| ORF147 [Staphylococcus phage G1] gi|119658122|gb|ABL87157.1| putative integration host factor [Staphylococcus phage 812] gi|182627946|gb|ACB89108.1| gp ORF115 [Staphylococcus phage A5W] Length = 101 Score = 49.1 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQK 59 MS R D+ + IS+ G +D ++ + I D G +K F V ++ Sbjct: 1 MSTA-NRRDIARKISENTGYYIQDVEEILSAETDAISDLLEEGYTKVKNHKFMQIEVIER 59 Query: 60 ---GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 + G N + + R+ + FK L + ++D + + Sbjct: 60 KGKKAWDGLN---KEYFHLPNRKAIKFKPLKEL-EEVIDRLNEEE 100 >gi|255264224|ref|ZP_05343566.1| DNA-binding protein HU, putative [Thalassiobium sp. R2A62] gi|255106559|gb|EET49233.1| DNA-binding protein HU, putative [Thalassiobium sp. R2A62] Length = 153 Score = 49.1 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + + DL+ + + G+ +KD V I ++ GE + I V ++ R Sbjct: 67 MKKKDLMDRVVERSGMKKKDVKPAVEAALAVIGEALAAGEEMNIQPLGKIMVNREKDRP 125 >gi|315919280|ref|ZP_07915520.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693155|gb|EFS29990.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 212 Score = 49.1 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+ LV I LS D T + L E+ G+ + I V Sbjct: 30 ETVNTKKLVYRIHDRCSLSPSDVTATLEELKYEVAQCLKEGKKVHIDGLGYLQVTLSCEE 89 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ + + K+ + + FKA LK + D Sbjct: 90 EIRDPKDKRVHKVKL-KAIKFKADKELKAELSD 121 >gi|294626279|ref|ZP_06704882.1| bacterial DNA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599425|gb|EFF43559.1| bacterial DNA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 266 Score = 49.1 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISS---FATFHVK 57 + ++++ LV I++ L+ KD + +L S +G + I T HV Sbjct: 167 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVP 226 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 227 AKPKRKGINPFTKKEQMFAAKPATTKLKSRPLKKLKDA 264 >gi|253582551|ref|ZP_04859772.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835421|gb|EES63961.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 112 Score = 49.1 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 3 KTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + ++ +K + + S+K++ + + +N + + + + + F K S Sbjct: 13 EKMKEAEFIKFYKERNEIKSKKEAKEKIDSFWNALFKAVSEEKRVMFKDWGVFEEKDVKS 72 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R + QE P++V+ F+A L + + Sbjct: 73 RKIVIPRQLQEAYTQPKKVLKFRAGGKLIQSVNK 106 >gi|330886055|gb|EGH19956.1| hypothetical protein PSYMO_00050 [Pseudomonas syringae pv. mori str. 301020] Length = 38 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R GRN T ++I ++VV F ++ +L I Sbjct: 1 RTGRNPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 35 >gi|168704952|ref|ZP_02737229.1| hypothetical protein GobsU_35800 [Gemmata obscuriglobus UQM 2246] Length = 128 Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 9/95 (9%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKGSR 62 +T+S LV +S++ LS+K + + + + G A + Q R Sbjct: 30 LTKSQLVAQLSEKTELSKKQVEGVLDAIVDAVKAQLGPNGPGKFVFPGLARMSLSQVAER 89 Query: 63 VG----RNLQTNQEVKI---DPRRVVVFKASSILK 90 G N Q V + +K Sbjct: 90 KGGETKINPLNKQPYVTQPRPAYNKVNIRPVKSIK 124 >gi|83943258|ref|ZP_00955718.1| DNA-binding protein HU, putative [Sulfitobacter sp. EE-36] gi|83846266|gb|EAP84143.1| DNA-binding protein HU, putative [Sulfitobacter sp. EE-36] Length = 121 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + + +L+ ++ + G+ ++D+ V + + ++ + + F V + Sbjct: 32 LGPVMRKKELIDTVVERSGVKKRDAKPVVDAMLAVLGEALSDSRELNLLPFGKLKVINEK 91 Query: 61 SRVGRNLQTNQEVKIDPRRV 80 L+ + +++ R+V Sbjct: 92 E-----LKNGKMIRVKVRQV 106 >gi|320012167|gb|ADW07017.1| histone family protein DNA-binding protein [Streptomyces flavogriseus ATCC 33331] Length = 87 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 30/103 (29%) Query: 5 ITRSDLVKSISKEF----GLSRKDSTRFVTTLFNEICDS------AVRGEAIKISSFATF 54 + RS L++++ + LS R V LF + ++ G A+ + F +F Sbjct: 1 MDRSALIEAVGRRTAGGGELSADQIGRVVDALFGTVAEAGAIAETLRTGGAVTLVGFGSF 60 Query: 55 HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 H + + + L + + D++ Sbjct: 61 HQED-----------GEA---------ALRPGKALNEFVNDEV 83 >gi|83954391|ref|ZP_00963111.1| DNA-binding protein HU, putative [Sulfitobacter sp. NAS-14.1] gi|83841428|gb|EAP80598.1| DNA-binding protein HU, putative [Sulfitobacter sp. NAS-14.1] Length = 121 Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + + +L+ ++ + G+ ++D+ V + + ++ + + F V + Sbjct: 32 LGPVMRKKELIDTVVERSGVKKRDAKPVVDAMLAVLGEALSDSRELNLLPFGKLKVINEK 91 Query: 61 SRVGRNLQTNQEVKIDPRRV 80 L+ + +++ R+V Sbjct: 92 E-----LKNGKMIRVKVRQV 106 >gi|330884448|gb|EGH18597.1| hypothetical protein Pgy4_37141 [Pseudomonas syringae pv. glycinea str. race 4] Length = 47 Score = 48.4 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 55 HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 V ++ +R R+ T ++I ++VV F ++ +L I Sbjct: 3 KVAERPARTVRHPSTGAAIEIAAKKVVKFVSAKVLNDAINKG 44 >gi|301161841|emb|CBW21385.1| putative non-specific DNA binding protein [Bacteroides fragilis 638R] Length = 159 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT++ L + I+++ L+ D V L + + + +++ TF +K + Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87 Query: 62 RVGR 65 GR Sbjct: 88 -RGR 90 >gi|260170959|ref|ZP_05757371.1| putative DNA-binding protein [Bacteroides sp. D2] Length = 233 Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+ LV I LS D T + L E+ G+ + I V Sbjct: 51 ETVNTKKLVYRIHDRCSLSPSDVTATLEELKYEVAQCLKEGKKVHIDGLGYLQVTLSCEE 110 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ + + K+ + + FKA LK + D Sbjct: 111 EIRDPKDKRVHKVKL-KAIKFKADKELKAELSD 142 >gi|66391376|ref|YP_238606.1| ORF129 [Staphylococcus phage Twort] gi|62637306|gb|AAX92417.1| ORF129 [Staphylococcus phage Twort] Length = 98 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 8/100 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQKGSRV- 63 R D+V+ IS + G +D + I + G + IK F V+ + + Sbjct: 3 NRKDIVRRISDKTGYYMQDIEEILNAEAESIYELLKEGNDKIKYHKFYQIEVETREPKEA 62 Query: 64 --GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 G N + +I ++ + F+ S L ++++ ++ + Sbjct: 63 WDGLN---KRYFQIPEKKYIKFRPMSEL-EKVIKEINEEE 98 >gi|53712121|ref|YP_098113.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|52214986|dbj|BAD47579.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] Length = 159 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT++ L + I+++ L+ D V L + + + +++ TF +K + Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87 Query: 62 RVGR 65 GR Sbjct: 88 -RGR 90 >gi|189466861|ref|ZP_03015646.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM 17393] gi|189435125|gb|EDV04110.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM 17393] Length = 169 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 16/88 (18%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62 L +I K +++ D + L E+ ++ V G +K++ F TFH V Sbjct: 40 LAAAIQKSCAMTKGDVKHVIEALVEEVQENLVNGNKVKLNLFGTFHMTFCCPGVATSAEC 99 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 +N++ V I F LK Sbjct: 100 TVKNIK---RVNI------RFVPDKELK 118 >gi|60680309|ref|YP_210453.1| putative non-specific DNA binding protein [Bacteroides fragilis NCTC 9343] gi|60491743|emb|CAH06500.1| putative non-specific DNA binding protein [Bacteroides fragilis NCTC 9343] Length = 159 Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT++ L + I+++ L+ D V L + + + +++ TF +K + Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87 Query: 62 RVGR 65 GR Sbjct: 88 -RGR 90 >gi|224026653|ref|ZP_03645019.1| hypothetical protein BACCOPRO_03410 [Bacteroides coprophilus DSM 18228] gi|224019889|gb|EEF77887.1| hypothetical protein BACCOPRO_03410 [Bacteroides coprophilus DSM 18228] Length = 44 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 24/44 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48 +T++++V I+K+ G+ + T V + DS + GE + + Sbjct: 1 MTKAEIVDRIAKQTGIEKNTVTAVVEAFMKSVKDSMIVGEEVFL 44 >gi|254521039|ref|ZP_05133094.1| bacterial DNA-binding protein [Stenotrophomonas sp. SKA14] gi|219718630|gb|EED37155.1| bacterial DNA-binding protein [Stenotrophomonas sp. SKA14] Length = 132 Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57 + +T+S LV I++ G+ KD + +L + + S +G + + T +V Sbjct: 33 EVLTKSGLVAHIAEASGVVAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKITTVNVA 92 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 93 AKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130 >gi|282857713|ref|ZP_06266922.1| histone family protein DNA-binding protein [Pyramidobacter piscolens W5455] gi|282584383|gb|EFB89742.1| histone family protein DNA-binding protein [Pyramidobacter piscolens W5455] Length = 98 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 6/90 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRF--VTTLFNEICDSAVRGEAIKISSFA--TFHVKQKG 60 + +L++ K + + + + + E + + T + + G Sbjct: 1 MNTDELIRQYRKNSRYPKPRAQALADIENFLAVVAKALTDEERVNLRGVGILTTTLSEVG 60 Query: 61 SRVGRNLQTNQEVKIDPRRVV--VFKASSI 88 + +N +T + + + + FK S Sbjct: 61 DKTYKNPRTGESFVKEGHKTLRAKFKPSKA 90 >gi|157093125|gb|ABV22217.1| major basic nuclear protein [Karlodinium micrum] Length = 110 Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 ++K +++ L K+++ E GL +K + + ++ + + I + K Sbjct: 14 VAKAMSKGALAKALADEHGLKQKACSEVLNSIVDIATKEVKKNGIFTIHGVCRIKTRTKP 73 Query: 61 SRVG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + RN+ +EVK+ + VV ++ LK +I Sbjct: 74 ATKAGVRNIF-GKEVKVAAKPAKTVVKAYPAAALKSQI 110 >gi|153808071|ref|ZP_01960739.1| hypothetical protein BACCAC_02357 [Bacteroides caccae ATCC 43185] gi|149128974|gb|EDM20190.1| hypothetical protein BACCAC_02357 [Bacteroides caccae ATCC 43185] Length = 169 Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + + L +I L+ D + ++ S +G+ +KI TFH+ Sbjct: 37 VNK--LANAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|194364785|ref|YP_002027395.1| histone family protein DNA-binding protein [Stenotrophomonas maltophilia R551-3] gi|194347589|gb|ACF50712.1| histone family protein DNA-binding protein [Stenotrophomonas maltophilia R551-3] Length = 132 Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57 + +T+S LV I++ G+ KD + +L + + S +G + + T +V Sbjct: 33 EVLTKSGLVAHIAEASGVIAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKISTVNVP 92 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 93 AKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130 >gi|94313664|ref|YP_586873.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34] gi|93357516|gb|ABF11604.1| Histone-like DNA-binding protein [Cupriavidus metallidurans CH34] Length = 230 Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58 T +S LV + + L K + L N I + +G + V Sbjct: 132 TFNKSSLVAHLVAQTQLEAKAVKTVLAHLENTIVSALNKKGAGEFTLPGLLKVTAQQVPA 191 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 192 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 228 >gi|255007647|ref|ZP_05279773.1| putative non-specific DNA binding protein [Bacteroides fragilis 3_1_12] gi|313145341|ref|ZP_07807534.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134108|gb|EFR51468.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 159 Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 KT++ L + I+++ L+ D V L + + + +++ TF +K + Sbjct: 29 GKTVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSELLNSKTVRLEGLGTFTMKARS- 87 Query: 62 RVGR 65 GR Sbjct: 88 -RGR 90 >gi|84515538|ref|ZP_01002900.1| hypothetical protein SKA53_02731 [Loktanella vestfoldensis SKA53] gi|84510821|gb|EAQ07276.1| hypothetical protein SKA53_02731 [Loktanella vestfoldensis SKA53] Length = 135 Score = 47.2 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + DL+ ++ GL ++D+ + I ++ RG+ + + V + Sbjct: 48 KPDLLDQLATRSGLKKRDAKLALDATLALIGEALARGDDLLLPPLGRVRVVK 99 >gi|119357868|ref|YP_912512.1| sporulation domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355217|gb|ABL66088.1| Sporulation domain protein [Chlorobium phaeobacteroides DSM 266] Length = 350 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS-RV 63 +T +L + ++ + R ++ R + L + ++ +++S F V + + R Sbjct: 1 MTEHNLTEELAALLDIERAEAGRLLNGLSGAMSAELLQEGKLQLSGLGLFTVHHEPATRQ 60 Query: 64 GRNLQTNQE-VKIDPRRVVVFKA 85 +E + PR VVF Sbjct: 61 MH----GEEAIYCPPRNRVVFLP 79 >gi|268317075|ref|YP_003290794.1| hypothetical protein Rmar_1519 [Rhodothermus marinus DSM 4252] gi|262334609|gb|ACY48406.1| hypothetical protein Rmar_1519 [Rhodothermus marinus DSM 4252] Length = 68 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKA 85 + L + ++ +RGE++ + TF+V +GS R + V PR + F Sbjct: 7 EQVAQALAELVQEALMRGESVHVPGLGTFYVDHRGSTTERLPD-GRVVLHPPRDLPAFTP 65 >gi|296448475|ref|ZP_06890357.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] gi|296254027|gb|EFH01172.1| histone family protein DNA-binding protein [Methylosinus trichosporium OB3b] Length = 130 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKG 60 +++T+S L+ ++++ L RK + TL S RG + +++ Sbjct: 29 ESLTKSALINHLAEQNELPRKTAAAVYATLEEVFLGSVHPRGVGEFTLPGLLKVSLRKVP 88 Query: 61 SRVG----RNLQTNQEVKI---DPRRVVVFKASSILKKR 92 +R RN T + VK V + S LK Sbjct: 89 ARKAGTLVRNPATGEMVKAAAKPASVRVKIRPLSKLKTA 127 >gi|15838537|ref|NP_299225.1| histone-like protein [Xylella fastidiosa 9a5c] gi|9107041|gb|AAF84745.1|AE004013_11 histone-like protein [Xylella fastidiosa 9a5c] Length = 130 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57 +T+++S LV +++ L+ KD + L N I S +G + + T +V Sbjct: 31 ETLSKSALVAHLAESSALAAKDVRTLLGALENTIHASLHKKGVGSFTLPGLLKISTVNVP 90 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 91 AKPKRKGINPFTKEEQWFAAKPASVKIKTRPLKKLKDA 128 >gi|190573189|ref|YP_001971034.1| putative histone-like protein [Stenotrophomonas maltophilia K279a] gi|190011111|emb|CAQ44720.1| putative histone-like protein [Stenotrophomonas maltophilia K279a] Length = 132 Score = 47.2 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57 + +T+S LV I++ G+ KD + +L + + S +G + + T +V Sbjct: 33 EVLTKSGLVAHIAEASGVVAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKITTVNVP 92 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 93 AKPKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130 >gi|253582858|ref|ZP_04860077.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835292|gb|EES63834.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 101 Score = 46.8 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 35/97 (36%), Gaps = 1/97 (1%) Query: 1 MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M + + + ++ L S K++ + + + + + + + + F K+ Sbjct: 1 MGEVMKEGEFIRFYRDRNCLRSIKEAKKKIDLFWTVVLKALDEDGKVLLKDWGVFEKKEV 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R + +E I ++F+ + LK + Sbjct: 61 APRKIMTPRMEKERVIKAGEKIIFRTGTGLKTLVNGA 97 >gi|253572388|ref|ZP_04849791.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838163|gb|EES66251.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 170 Score = 46.8 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L +I L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|29346927|ref|NP_810430.1| hypothetical protein BT_1517 [Bacteroides thetaiotaomicron VPI-5482] gi|29338825|gb|AAO76624.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 176 Score = 46.8 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L +I L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|298386430|ref|ZP_06995986.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|298260807|gb|EFI03675.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 170 Score = 46.8 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 20/47 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L +I L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|296120328|ref|YP_003628106.1| histone family protein DNA-binding protein [Planctomyces limnophilus DSM 3776] gi|296012668|gb|ADG65907.1| histone family protein DNA-binding protein [Planctomyces limnophilus DSM 3776] Length = 106 Score = 46.8 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 9/100 (9%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRGEAI-KISSFATFHVKQKG 60 K ++++D+ +I++ LS+KD T L + I +G + + V +K Sbjct: 7 KPLSKTDIFAAIAESTSLSKKDVQAVFTALNDLISKQVGKKGPGVFAVPGLLKIQVVRKP 66 Query: 61 SRVGR---NL-QTNQEVKI---DPRRVVVFKASSILKKRI 93 + N + + + + R V +A LK + Sbjct: 67 ATKATQRANPFKPGEMMVVKAKPARNTVKIRALKSLKDMV 106 >gi|298375884|ref|ZP_06985840.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|298266921|gb|EFI08578.1| DNA-binding protein [Bacteroides sp. 3_1_19] Length = 253 Score = 46.8 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + S D + + + D + G +++ TF V K R Sbjct: 80 EFINRAKSRSSFSPADMKGILQLFQDMMVDFLMYGYNVELEGIGTFSVSLKS-RPVM--- 135 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIM 94 ++ +I + V F++S L+ R+ Sbjct: 136 --EKNEIRAESIHFKDVKFRSSKELRDRLK 163 >gi|114762939|ref|ZP_01442371.1| hypothetical protein 1100011001359_R2601_26496 [Pelagibaca bermudensis HTCC2601] gi|114544549|gb|EAU47556.1| hypothetical protein R2601_26496 [Roseovarius sp. HTCC2601] Length = 141 Score = 46.8 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 9/73 (12%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + +LV + G+ ++++ V + ++ G +++ F V N Sbjct: 56 KKELVDRVVARCGVKKREAKPSVEAALAILGEALAEGRELRLEPFGKLKVS--------N 107 Query: 67 LQT-NQEVKIDPR 78 ++T ++ I+ R Sbjct: 108 IKTRGEKRVINAR 120 >gi|330885370|gb|EGH19519.1| hypothetical protein Pgy4_41759 [Pseudomonas syringae pv. glycinea str. race 4] Length = 34 Score = 46.8 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R GRN T ++I ++V+ F + +L I Sbjct: 1 RTGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 34 >gi|253582816|ref|ZP_04860036.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835392|gb|EES63933.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 93 Score = 46.4 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + D +K +E L K++ ++T + + + + + + F +K +R Sbjct: 1 MKEKDFIKVYKEERNLKNLKEAQHRISTFWETVEEILQEDKKLVFKGWGIFEIKPVRARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + + + K P+ +VF+ ILK+ I D Sbjct: 61 YCDPRIKKIKKTLPKNKLVFRQGKILKENINVD 93 >gi|26553701|ref|NP_757635.1| DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans HF-2] gi|26453708|dbj|BAC44039.1| DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans HF-2] Length = 121 Score = 46.4 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ +++K IS +S + L + I R E ++ VK + Sbjct: 17 KPLTKKEIIKLISNNSNISEPIIKELIEDLLSLIKAELDRCEQFRLFDLGKIKVKPGHKK 76 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 + N T + + + F S K+ + Sbjct: 77 LTTNPLTGETSTEWTKSKIKFVFSKQYKELVE 108 >gi|319786712|ref|YP_004146187.1| histone family protein DNA-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317465224|gb|ADV26956.1| histone family protein DNA-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 142 Score = 46.4 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 8/94 (8%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFA---TFHVKQKGS 61 +S L+K +S+ G+ KD + + + + + + + + + V K Sbjct: 47 KSALIKHLSETSGVVAKDVKAVLAAVEDAVSGAISKKGAGSFTLPGLFKVTSVKVPAKPK 106 Query: 62 RVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G N T +E V + LK Sbjct: 107 RKGINPFTKEEQWFAAKPASVKVKVRPLKKLKDA 140 >gi|281424532|ref|ZP_06255445.1| putative integration host factor subunit alpha [Prevotella oris F0302] gi|281401369|gb|EFB32200.1| putative integration host factor subunit alpha [Prevotella oris F0302] Length = 98 Score = 46.4 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +KT+T DL++ + GLS++ + + L I + G I + +F +F ++ Sbjct: 3 NKTLTSIDLLRKAKERSGLSQEILRQSLRALLGAISEVMDDGNNIALDNFGSFELRTVKE 62 Query: 62 RVG-RNLQTNQEVKIDPRRVVVFKASS 87 + N + + +VV F+A Sbjct: 63 HIVTPPPPNNTPIVVPEHQVVRFRAYK 89 >gi|317063649|ref|ZP_07928134.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689325|gb|EFS26160.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 105 Score = 46.4 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 2 SKTITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +T + + K+ S+ K+ + ++ + ++ + + F ++ Sbjct: 7 GEDMTEGEFI-RFYKKRNNSKSHKEVREKIDLFWDVLFEALNEDGKVVFQDWGVFEKRKM 65 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 SR + +P+ V+ F+A L Sbjct: 66 KSRKIMVPMWKESAYTEPKEVIKFRAGKGL 95 >gi|253583306|ref|ZP_04860504.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251833878|gb|EES62441.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 116 Score = 46.4 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/97 (11%), Positives = 33/97 (34%), Gaps = 1/97 (1%) Query: 1 MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M + + + ++ L + K++ + + + + + + + F K+ Sbjct: 16 MGEVMKEGEFIRFYRDRNCLRNIKEAKEKIDLFWTVVLKALAEDGKVSLKDWGVFEKKEV 75 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R + +E + F+ + LK + D Sbjct: 76 SPRKIMTPRMEKERVTKAGEKIKFRTGTGLKTLVNGD 112 >gi|255014715|ref|ZP_05286841.1| hypothetical protein B2_12469 [Bacteroides sp. 2_1_7] Length = 253 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + S D + + + D + G +++ TF V K R Sbjct: 80 EFINRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 135 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIM 94 ++ +I + V F++S L+ R+ Sbjct: 136 --EKNEIRAESIHFKDVKFRSSKELRDRLK 163 >gi|270296533|ref|ZP_06202733.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317480255|ref|ZP_07939361.1| hypothetical protein HMPREF1007_02478 [Bacteroides sp. 4_1_36] gi|270273937|gb|EFA19799.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903576|gb|EFV25424.1| hypothetical protein HMPREF1007_02478 [Bacteroides sp. 4_1_36] Length = 170 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 L SI K +++ D + L EI + G+ +K++ TFH+ + Sbjct: 40 LAASIQKNCAMTKGDVKHVIEALVEEIQGNLANGDKVKLNQLGTFHMTFR 89 >gi|257469402|ref|ZP_05633495.1| hypothetical protein FulcA4_08679 [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 3/87 (3%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K+ S+ K+ + ++ + ++ + + F ++ SR Sbjct: 1 MTEGEFI-RFYKKRNNSKSHKEVREKIDLFWDVLFEALNEDGKVVFQDWGVFEKRKMKSR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 + +P+ V+ F+A L Sbjct: 60 KIMVPMWKESAYTEPKEVIKFRAGKGL 86 >gi|72383831|ref|YP_293185.1| histone-like DNA-binding protein [Ralstonia eutropha JMP134] gi|72123174|gb|AAZ65328.1| Histone-like bacterial DNA-binding protein [Ralstonia eutropha JMP134] Length = 202 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 12/99 (12%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ--- 58 T +S L+ + ++ L +K + L N I + +G + F V+ Sbjct: 104 TFNKSSLLAHLIEQTQLEKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGL--FKVQAIQV 161 Query: 59 --KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G+N T Q+ V + LK Sbjct: 162 PATKKRFGKNPFTGQDQWFAAKPASVKVKVRPLKKLKDA 200 >gi|298385982|ref|ZP_06995539.1| non-specific DNA-binding protein [Bacteroides sp. 1_1_14] gi|298261210|gb|EFI04077.1| non-specific DNA-binding protein [Bacteroides sp. 1_1_14] Length = 167 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + + I+ LS D + L + +++ + F TF V K G Sbjct: 34 AQIADEIAGYSSLSSGDVKNCIDNLVTVMTQHLQTSQSVTLEGFGTFRVVMKAGGKGV-- 91 Query: 68 QTNQEVKID-PRRVVVFKA 85 +T +EV V F+ Sbjct: 92 ETAKEVSASQASLTVRFQP 110 >gi|28198762|ref|NP_779076.1| histone-like protein [Xylella fastidiosa Temecula1] gi|71275828|ref|ZP_00652112.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Dixon] gi|71898513|ref|ZP_00680684.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|71901883|ref|ZP_00683943.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|170730191|ref|YP_001775624.1| histone-like protein [Xylella fastidiosa M12] gi|182681454|ref|YP_001829614.1| histone family protein DNA-binding protein [Xylella fastidiosa M23] gi|28056853|gb|AAO28725.1| histone-like protein [Xylella fastidiosa Temecula1] gi|71163406|gb|EAO13124.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Dixon] gi|71728354|gb|EAO30525.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|71731637|gb|EAO33697.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa Ann-1] gi|167964984|gb|ACA11994.1| histone-like protein [Xylella fastidiosa M12] gi|182631564|gb|ACB92340.1| histone family protein DNA-binding protein [Xylella fastidiosa M23] gi|307579904|gb|ADN63873.1| histone family protein DNA-binding protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 130 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVK 57 +T+++S LV +++ L+ KD + L N I S +G + + T +V Sbjct: 31 ETLSKSALVAHLAESSALAAKDVRTLLGALENTIHASLHKKGVGSFTLPGLLKISTVNVP 90 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 91 AKPKRKGINPFTKEEQWFAAKPASVKIKTRPLKKLKDA 128 >gi|154493980|ref|ZP_02033300.1| hypothetical protein PARMER_03325 [Parabacteroides merdae ATCC 43184] gi|154086240|gb|EDN85285.1| hypothetical protein PARMER_03325 [Parabacteroides merdae ATCC 43184] Length = 148 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 16/94 (17%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L IS + S D + L N + + +GE +K+ +F ++ G Sbjct: 38 ELCDLISAQSTASSGDVKLILDELVNVMRRNLGKGEVVKVGELGSFQLQ-----FG---S 89 Query: 69 TNQEVK-------IDPRRVVVFKASSILKKRIMD 95 T + I RR+V F+ +LK I + Sbjct: 90 TGTLTEKEFSHALIKSRRIV-FRPGKLLKDAIKN 122 >gi|89055007|ref|YP_510458.1| hypothetical protein Jann_2516 [Jannaschia sp. CCS1] gi|88864556|gb|ABD55433.1| hypothetical protein Jann_2516 [Jannaschia sp. CCS1] Length = 169 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 R DL+++++K L R ++ + +EI + + + + +K++ + G Sbjct: 82 RPDLIEAVAKRVSLKRSEAKMVFDVVLDEIGKALDASDEVVVPPLGKLMIKKRVEKPG 139 >gi|262383760|ref|ZP_06076896.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301311932|ref|ZP_07217854.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|262294658|gb|EEY82590.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300830034|gb|EFK60682.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 211 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + S D + + + D + G +++ TF V K R Sbjct: 38 EFISRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 93 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIM 94 ++ +I + V F++S L+ R+ Sbjct: 94 --EKNEIRAESIHFKDVKFRSSKELRDRLK 121 >gi|295087874|emb|CBK69397.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 164 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 I + L +I L+ D + +++ S +G+ +KI TFH+ Sbjct: 37 INK--LADAIEANSSLTAGDVKHSIEAFVDQLRLSLTQGDKVKIDGLGTFHI 86 >gi|257470500|ref|ZP_05634590.1| hypothetical protein FulcA4_14234 [Fusobacterium ulcerans ATCC 49185] gi|317064707|ref|ZP_07929192.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690383|gb|EFS27218.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 93 Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGLSR-KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 + D +K E L K++ ++T + + + + + + F +K +R Sbjct: 1 MKEKDFIKVYKDERNLKNLKEAQHRISTFWETVEEILQEDKKLVFKGWGIFEIKPVRARE 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + + + K P+ +VF+ ILK+ I D Sbjct: 61 YCDPRIKKIKKTLPKNKLVFRQGKILKENINVD 93 >gi|86153462|ref|ZP_01071666.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843188|gb|EAQ60399.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 45 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 ++ +R R T + +K+ RV FK LK+ + +K Sbjct: 1 ERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 44 >gi|213609751|ref|ZP_03369577.1| integration host factor subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 43 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 5 ITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46 +T+S+L++ ++ ++ + K V + + + +GE I Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERI 43 >gi|224024162|ref|ZP_03642528.1| hypothetical protein BACCOPRO_00885 [Bacteroides coprophilus DSM 18228] gi|224017384|gb|EEF75396.1| hypothetical protein BACCOPRO_00885 [Bacteroides coprophilus DSM 18228] Length = 146 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKGSRVGRN 66 ++ + IS+ ++R D + L +E D GE +++ TF + KG+ V Sbjct: 37 EIAEKISRSTTVTRADVKAVLAALEDETIDLLQNGEIVQLGDLGTFRASISSKGAEVA-- 94 Query: 67 LQTNQEVKIDPRRVVV--FKASSILKKRIMDDMRGRKCNKDDVTSPS 111 +E + + V F+ S + + R K D + Sbjct: 95 ----EEYNVSMIKGVKVIFRPSKKISDAMQTASFERVAPKKDAEEAT 137 >gi|160886237|ref|ZP_02067240.1| hypothetical protein BACOVA_04244 [Bacteroides ovatus ATCC 8483] gi|156108122|gb|EDO09867.1| hypothetical protein BACOVA_04244 [Bacteroides ovatus ATCC 8483] Length = 168 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 I + L +I L+ D + ++ S +G+ +KI TFH+ Sbjct: 37 INK--LADAIEANSSLTAGDVKHSIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|237715003|ref|ZP_04545484.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409048|ref|ZP_06085593.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645039|ref|ZP_06722766.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294807143|ref|ZP_06765960.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298483450|ref|ZP_07001627.1| DNA-binding protein [Bacteroides sp. D22] gi|299146738|ref|ZP_07039806.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|229444836|gb|EEO50627.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353259|gb|EEZ02354.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639618|gb|EFF57909.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294445643|gb|EFG14293.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298270398|gb|EFI11982.1| DNA-binding protein [Bacteroides sp. D22] gi|298517229|gb|EFI41110.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 164 Score = 45.7 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 I + L +I L+ D + ++ S +G+ +KI TFH+ Sbjct: 37 INK--LADAIEANSSLTAGDVKHSIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|194291906|ref|YP_002007813.1| histone-like DNA-binding protein [Cupriavidus taiwanensis LMG 19424] gi|193225810|emb|CAQ71756.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis LMG 19424] Length = 196 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58 T +S LV + + L K + L N I + +G + V Sbjct: 98 TFNKSSLVAHLVAQTQLEAKAVKTVLAHLENTIVGALNKKGAGEFTLPGLLKVTAQQVPA 157 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 158 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 194 >gi|253570191|ref|ZP_04847600.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840572|gb|EES68654.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 158 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++ I+ ++ D + L I + G I++ +F + S G Sbjct: 32 MTQRQIIDQIADRCTVTGSDVKAVLDALMTVIKRNLANGSPIRLGDLGSF----RPSVSG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 I V F AS++ K R+ Sbjct: 88 ----------IGSENVDKFTASNVKKARV 106 >gi|241589931|ref|YP_002979956.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|240868643|gb|ACS66302.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] Length = 135 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T T++ LV ++++ G+ K + L + I + + A + S F V Sbjct: 37 TFTKASLVSHLAEQAGVEAKAVKAVLQHLESTILGALHKKGAGEFSLPGLFKVTSVKVPA 96 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 R G+N T QE V + +K Sbjct: 97 TKRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDA 133 >gi|29349440|ref|NP_812943.1| putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|29341349|gb|AAO79137.1| conserved hypothetical protein, putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 158 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T+ ++ I+ ++ D + L I + G I++ +F + S G Sbjct: 32 MTQRQIIDQIADRCTVTGSDVKAVLDALMTVIKRNLANGSPIRLGDLGSF----RPSVSG 87 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 I V F AS++ K R+ Sbjct: 88 ----------IGSENVDKFTASNVKKARV 106 >gi|256841119|ref|ZP_05546626.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736962|gb|EEU50289.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 253 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + S D + + + D + G +++ TF V K R Sbjct: 80 EFISRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 135 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIM 94 ++ +I + V F++S L+ R+ Sbjct: 136 --EKNEIRAESIHFKDVKFRSSKELRDRLK 163 >gi|323137749|ref|ZP_08072825.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] gi|322397046|gb|EFX99571.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC 49242] Length = 129 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 9/99 (9%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV-RG-EAIKISSFATFHVKQKG 60 +T+T+S L+ I+++ L RK + TL + S RG + +++ Sbjct: 28 ETLTKSALINLIAEQNELPRKTAVGVYATLESVFLGSVHPRGVGEFTLPGLLKVTLRKVP 87 Query: 61 SRVG----RNLQTNQEVK---IDPRRVVVFKASSILKKR 92 +R RN T + VK V +A S LK Sbjct: 88 ARKAGTLVRNPATGEMVKGAAKPASVRVKIRALSKLKNA 126 >gi|212211792|ref|YP_002302728.1| DNA-binding protein [Coxiella burnetii CbuG_Q212] gi|212010202|gb|ACJ17583.1| bacterial DNA-binding protein [Coxiella burnetii CbuG_Q212] Length = 78 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 26 TRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GSRVGRNLQTNQEVKI---DP 77 + + L + + +G + VK+K +R G N T + + Sbjct: 2 SAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKARKGINPFTGEMMTFKAKPA 61 Query: 78 RRVVVFKASSILKKRIM 94 R VV +A LK+ + Sbjct: 62 RNVVKVRALKRLKEMVE 78 >gi|293372623|ref|ZP_06619005.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292632432|gb|EFF51028.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 168 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 I + L +I L+ D + ++ S +G+ +K+ TFH+ Sbjct: 37 INK--LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKVDGLGTFHI 86 >gi|237723083|ref|ZP_04553564.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260173644|ref|ZP_05760056.1| hypothetical protein BacD2_17350 [Bacteroides sp. D2] gi|315921907|ref|ZP_07918147.1| conserved hypothetical protein [Bacteroides sp. D2] gi|229447605|gb|EEO53396.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|313695782|gb|EFS32617.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 168 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 I + L +I L+ D + ++ S +G+ +K+ TFH+ Sbjct: 37 INK--LADAIEANSSLTAGDVKHAIEAFVEQLRLSLTQGDKVKVDGLGTFHI 86 >gi|29348608|ref|NP_812111.1| putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|253569051|ref|ZP_04846461.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29340513|gb|AAO78305.1| putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251841070|gb|EES69151.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 168 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S + K I+ LS D + L + E++ + F TF + K + G Sbjct: 34 SQIAKEIAAYSSLSPGDVKNTLDNLVTVMGQHLQASESVSLDGFGTFRMVMKSNGKGV-- 91 Query: 68 QTNQEVKID-PRRVVVFKA 85 +T++EV V F Sbjct: 92 ETSEEVSAAQASLTVRFLP 110 >gi|218682665|ref|ZP_03530266.1| histone-like DNA-binding protein [Rhizobium etli CIAT 894] Length = 57 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 T +++ I+ GL++ + V +F I D+A I F Sbjct: 3 TTNEIADKIAANNGLTKVQANGIVEAVFQAIADAAGSDAETSIPGFGK 50 >gi|257468390|ref|ZP_05632484.1| hypothetical protein FulcA4_03554 [Fusobacterium ulcerans ATCC 49185] gi|317062663|ref|ZP_07927148.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688339|gb|EFS25174.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + ++ K + + K + ++ + + + + + ++ F K++ +R Sbjct: 1 MTEGEFIRFYKKRNKIKNHKAVKEKIDLFWDVLLKALDEDKKVALQNWGVFEKKERKARK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSIL 89 + +P+ V FKA L Sbjct: 61 VLMPMWEEAGYTEPKEAVKFKAGKAL 86 >gi|58425631|gb|AAW74668.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 192 Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55 + ++++ LV I++ L+ KD + +L S + TF Sbjct: 93 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 146 Query: 56 ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92 V K R G N T +E +I + + LK Sbjct: 147 TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKIKSRMMKRLKDA 190 >gi|254777677|ref|ZP_05219193.1| bacterial nucleoid DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 43 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 19/42 (45%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45 + R +LV ++++ G ++ + + LF +GE Sbjct: 2 AMNRKELVAAVAERSGNTQAAVSDVLDALFEVFTAQVKKGEK 43 >gi|319788815|ref|YP_004090130.1| hypothetical protein Rumal_3814 [Ruminococcus albus 7] gi|315450682|gb|ADU24244.1| hypothetical protein Rumal_3814 [Ruminococcus albus 7] Length = 81 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 15/86 (17%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + K ++ G+S + + R++ ++ + + GE +++ SF F V Sbjct: 5 EFTKELASRKGISEQSAYRYINSVMDVLRQVLTEGEEVRVGSFGRFTVVT---------- 54 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIM 94 + + V+F ++ LK+ + Sbjct: 55 -----DLSGDKTVMFCSAKSLKQAVN 75 >gi|254485852|ref|ZP_05099057.1| DNA-binding protein HU, putative [Roseobacter sp. GAI101] gi|214042721|gb|EEB83359.1| DNA-binding protein HU, putative [Roseobacter sp. GAI101] Length = 101 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 6/56 (10%), Positives = 22/56 (39%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + + + +L+ + + + +KD+ V + + ++ + + F V Sbjct: 9 VGPVMRKKELIDLVVERSSIKKKDAKPVVEAMLAVLGEALADNRELNLLPMGKFKV 64 >gi|257468469|ref|ZP_05632563.1| hypothetical protein FulcA4_03949 [Fusobacterium ulcerans ATCC 49185] gi|317062730|ref|ZP_07927215.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688406|gb|EFS25241.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K+ S+ K+ + +N + + + + + ++ F +++ R Sbjct: 1 MTEGEFI-RFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVILKNWGVFEKRERKVR 59 Query: 63 VGRNLQTNQEVK-IDPRRVVVFKASSIL 89 T ++ + I P+ +V F+ L Sbjct: 60 KVLVP-TWEKAQYIKPKEIVKFRTGKSL 86 >gi|163857634|ref|YP_001631932.1| histone-like protein [Bordetella petrii DSM 12804] gi|163261362|emb|CAP43664.1| histone-like protein [Bordetella petrii] Length = 142 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 + + +S L+ + ++ G+ K + L + S +G + V++ Sbjct: 43 QALNKSQLIAHLVEQTGVEAKSVKAVLAGLEGAVLGSVDKKGAGEFSLPGLFKVTVQKVP 102 Query: 59 -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 103 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 140 >gi|150008887|ref|YP_001303630.1| hypothetical protein BDI_2282 [Parabacteroides distasonis ATCC 8503] gi|149937311|gb|ABR44008.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 211 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + S D + + + D + G +++ TF V K R Sbjct: 38 EFINRAKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSVSLKS-RPVM--- 93 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIM 94 ++ ++ + V F++S L+ R+ Sbjct: 94 --EKNEVRAESIHFKDVKFRSSKELRDRLK 121 >gi|193891023|gb|ACF28665.1| basic nuclear protein [Amphidinium carterae] Length = 108 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 6/99 (6%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK-- 59 ++ +T S+ K+++++ L KD + +L + + + K++ + K Sbjct: 10 TEALTMSEAYKTVAEKMELKPKDVKGIMQSLLELSTEQVKKSGSFKLAGMLNMKLISKPA 69 Query: 60 -GSRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRIM 94 +R G N T + + V A LK+ + Sbjct: 70 TKARKGLNPFTKEPCVFKAKPASKSVKVLALKKLKEALN 108 >gi|330825266|ref|YP_004388569.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|329310638|gb|AEB85053.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 70 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 23/41 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45 + R++LV+ ++ LS+ + + TL + I + +G+A Sbjct: 1 MNRAELVEILASRNDLSKTAANAVLETLIDTIKTAVKKGDA 41 >gi|160891239|ref|ZP_02072242.1| hypothetical protein BACUNI_03687 [Bacteroides uniformis ATCC 8492] gi|156859460|gb|EDO52891.1| hypothetical protein BACUNI_03687 [Bacteroides uniformis ATCC 8492] Length = 208 Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + ++ G+S D + L I ++ + GE++ I +FHV T Sbjct: 72 LAQRMASRKGMSSGDVQSVLIDLPKFIEEALMEGESVTIKGLGSFHVA----------VT 121 Query: 70 NQEVK----IDPRRV----VVFKASSILKKRIMDDM 97 + + + P +V V F+ L R+ M Sbjct: 122 SDGFEHPDDVMPGKVRLSRVYFRPDKSLVARLNSGM 157 >gi|60683049|ref|YP_213193.1| hypothetical protein BF3598 [Bacteroides fragilis NCTC 9343] gi|253566190|ref|ZP_04843644.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60494483|emb|CAH09280.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251945294|gb|EES85732.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 163 Score = 44.5 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 DL + +S S+ + +T L + I + GE++ I +F Sbjct: 39 DLAEILSANSSRSKGEVLSILTDLPDVIEEILKNGESVSIRGLGSF 84 >gi|265766940|ref|ZP_06094769.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253317|gb|EEZ24793.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 163 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 DL + +S S+ + +T L + I + GE++ I +F Sbjct: 39 DLAEILSANSSRSKGEVLSILTDLPDVIEEILKNGESVSIRGLGSF 84 >gi|189425628|ref|YP_001952805.1| hypothetical protein Glov_2572 [Geobacter lovleyi SZ] gi|189421887|gb|ACD96285.1| conserved hypothetical protein [Geobacter lovleyi SZ] Length = 459 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMD 95 + + + I+ R+VV FK SS+LK I Sbjct: 432 PR-GEAITIEVRKVVTFKPSSVLKDAINK 459 >gi|60683127|ref|YP_213271.1| putative non-specific DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|60494561|emb|CAH09361.1| putative non-specific DNA-binding protein [Bacteroides fragilis NCTC 9343] Length = 148 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + K ++ L + I+++ L+ D V L + + + + +++ TF +K + Sbjct: 17 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 75 >gi|329960180|ref|ZP_08298622.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328532853|gb|EGF59630.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 165 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L +SI+++ L++ D + L + + +++ TF +K + G Sbjct: 38 LAESIAEKSSLTQGDVHNVIRNLMTTMRQHLLNSRTVRLDGLGTFTMKARTRGKG 92 >gi|253566328|ref|ZP_04843782.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945432|gb|EES85870.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 159 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + K ++ L + I+++ L+ D V L + + + + +++ TF +K + Sbjct: 28 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 86 >gi|119476899|ref|ZP_01617180.1| DNA-binding protein HU, putative [marine gamma proteobacterium HTCC2143] gi|119449706|gb|EAW30943.1| DNA-binding protein HU, putative [marine gamma proteobacterium HTCC2143] Length = 216 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 22/104 (21%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV------ 56 + +T+S + I + LSRK V +F E+ +S + G +I F + Sbjct: 116 QKMTKSQMFTDIGEATDLSRKQ----VGAVFAEL-ESLI-GRSIAKRGLGEFTIPGLMKV 169 Query: 57 -----KQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKK 91 K +R G N T +E +I V + LK+ Sbjct: 170 TTVKKAAKKARKGINPFTGEE-QIFKAKPASIAVKVRPLKKLKE 212 >gi|289651720|ref|ZP_06483063.1| hypothetical protein Psyrpa2_28829 [Pseudomonas syringae pv. aesculi str. 2250] Length = 36 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 GRN T ++I ++VV F ++ +L I Sbjct: 1 GRNPSTGASIEIAAKKVVKFVSAKVLNDAINKG 33 >gi|53715193|ref|YP_101185.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|265767021|ref|ZP_06094850.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52218058|dbj|BAD50651.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|263253398|gb|EEZ24874.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301164639|emb|CBW24198.1| putative non-specific DNA-binding protein [Bacteroides fragilis 638R] Length = 159 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + K ++ L + I+++ L+ D V L + + + + +++ TF +K + Sbjct: 28 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 86 >gi|150007208|ref|YP_001301951.1| hypothetical protein BDI_0553 [Parabacteroides distasonis ATCC 8503] gi|298375201|ref|ZP_06985158.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|301310786|ref|ZP_07216725.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|149935632|gb|ABR42329.1| hypothetical protein BDI_0553 [Parabacteroides distasonis ATCC 8503] gi|298267701|gb|EFI09357.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|300832360|gb|EFK62991.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 234 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 T++ D I++E L++ D + + + +G +++ F T Sbjct: 110 TLSTQDAADQIAEESSLTKGDVLNVLDRYQRYVIKNLQKGYKVELLGFGT 159 >gi|53715090|ref|YP_101082.1| hypothetical protein BF3806 [Bacteroides fragilis YCH46] gi|52217955|dbj|BAD50548.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|301164515|emb|CBW24074.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 163 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 DL + +S S+ + +T L + I + GE++ I +F Sbjct: 39 DLAEILSANSSRSKGEVLSILTDLPDVIEEILKNGESVSIRGLGSF 84 >gi|255011319|ref|ZP_05283445.1| putative non-specific DNA binding protein [Bacteroides fragilis 3_1_12] Length = 159 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + K ++ L + I+++ L+ D V L + + + + +++ TF +K + Sbjct: 28 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 86 >gi|329963366|ref|ZP_08301007.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328528726|gb|EGF55679.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 168 Score = 44.5 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 L +I K ++R D + L EI G+ ++++ TFH+ + Sbjct: 40 LASNIQKNCAMTRGDVKHVIEALVEEIQGHLANGDKVRLNQLGTFHMTFR 89 >gi|270294519|ref|ZP_06200721.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275986|gb|EFA21846.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 208 Score = 44.1 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + ++ G+S D + L I ++ + GE++ I +FHV T Sbjct: 72 LAQRMASRKGMSSGDVQSVLIDLPKFIEEALMEGESVTIKGLGSFHVA----------VT 121 Query: 70 NQEVK----IDPRRV----VVFKASSILKKRIMDDM 97 + + + P +V V F+ L R+ M Sbjct: 122 SDGFEHPDDVMPGKVRLSRVYFRPDKSLVARLNSGM 157 >gi|319901958|ref|YP_004161686.1| DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319416989|gb|ADV44100.1| DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 162 Score = 44.1 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG----- 64 L +SI+++ L+ D + L + + + +++ TF +K + G Sbjct: 37 LAESIAEKSSLTPGDVHNVIRNLLSVMRQQLLNSRTVRLDGLGTFTMKARTRGKGVSKEE 96 Query: 65 RNL 67 N Sbjct: 97 VNP 99 >gi|86137493|ref|ZP_01056070.1| DNA-binding protein HU, putative [Roseobacter sp. MED193] gi|85825828|gb|EAQ46026.1| DNA-binding protein HU, putative [Roseobacter sp. MED193] Length = 186 Score = 44.1 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + + +L+ G+ +KD+ V L + ++ G + + F HV + Sbjct: 87 PALNKRELIDEAVLRSGVKKKDAKPVVEALLAILGETVAAGRDLNLKPFGKLHVNR 142 >gi|189468134|ref|ZP_03016919.1| hypothetical protein BACINT_04529 [Bacteroides intestinalis DSM 17393] gi|189436398|gb|EDV05383.1| hypothetical protein BACINT_04529 [Bacteroides intestinalis DSM 17393] Length = 169 Score = 44.1 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L + ++ G+S D + L I ++ GE++ I +F++ Sbjct: 40 LAQRMAHRKGMSEGDVQSVLVDLPKYIEEALREGESVTIRGLGSFNL 86 >gi|313149129|ref|ZP_07811322.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137896|gb|EFR55256.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 175 Score = 44.1 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + K ++ L + I+++ L+ D V L + + + + +++ TF +K + Sbjct: 44 VGKVVSTQQLAEMIAEKSSLTPGDVHNVVRNLMTAMRSALLDSKTVRLDGLGTFTMKAR 102 >gi|216565|dbj|BAA02149.1| HU2 protein [Escherichia coli W3110] Length = 35 Score = 44.1 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 6/35 (17%), Positives = 18/35 (51%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39 + ++ L+ I+++ LS+ + + + I +S Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITES 35 >gi|297520878|ref|ZP_06939264.1| transcriptional regulator HU subunit alpha [Escherichia coli OP50] Length = 29 Score = 43.7 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRIM 94 N QT +E+KI V F + LK + Sbjct: 1 NPQTGKEIKIAAANVPAFVSGKALKDAVK 29 >gi|325851847|ref|ZP_08171012.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] gi|327312543|ref|YP_004327980.1| putative DNA-binding protein [Prevotella denticola F0289] gi|325484689|gb|EGC87602.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] gi|326945112|gb|AEA20997.1| putative DNA-binding protein [Prevotella denticola F0289] Length = 144 Score = 43.7 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +T +L +I + SR D V L +EI GE + + FH+ Sbjct: 31 VTTEELADAIQENTSFSRGDVRGLVIALVDEISYRLREGETVALEGLGRFHL 82 >gi|317481124|ref|ZP_07940201.1| hypothetical protein HMPREF1007_03320 [Bacteroides sp. 4_1_36] gi|316902725|gb|EFV24602.1| hypothetical protein HMPREF1007_03320 [Bacteroides sp. 4_1_36] Length = 176 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 18/96 (18%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + ++ G+S D + L I ++ + GE++ I +FHV T Sbjct: 40 LAQRMASRKGMSSGDVQSVLIDLPKFIEEALMEGESVTIKGLGSFHVA----------VT 89 Query: 70 NQEVK----IDPRRV----VVFKASSILKKRIMDDM 97 + + + P +V V F+ L R+ M Sbjct: 90 SDGFEHPDDVMPGKVRLSRVYFRPDKSLVARLNSGM 125 >gi|115523980|ref|YP_780891.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] gi|115517927|gb|ABJ05911.1| histone family protein DNA-binding protein [Rhodopseudomonas palustris BisA53] Length = 98 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M+K ++++ L+ +IS+ +S+ D + + I FA V K Sbjct: 1 MAK-MSKAQLIDAISESSSVSKSDVKAVIEHMATVGYKELNEVGEFVIPGFAKMSVVNKP 59 Query: 61 ---SRVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 +R G N T + ++ + V + K + Sbjct: 60 ATEARSGINPFTKEPMEFAAKPASKTVKASPLKVAKDAV 98 >gi|257468104|ref|ZP_05632200.1| hypothetical protein FulcA4_02132 [Fusobacterium ulcerans ATCC 49185] gi|317062389|ref|ZP_07926874.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688065|gb|EFS24900.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K+ S+ K+ + +N + + + + ++ F +++ R Sbjct: 1 MTEGEFI-RFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVIFKNWGVFEKRERKVR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 + P+ VV F+A L + D Sbjct: 60 KILVPMWEEAGYTKPKEVVKFRAGKSLIEIANGDT 94 >gi|256026933|ref|ZP_05440767.1| hypothetical protein PrD11_02876 [Fusobacterium sp. D11] gi|289764919|ref|ZP_06524297.1| predicted protein [Fusobacterium sp. D11] gi|289716474|gb|EFD80486.1| predicted protein [Fusobacterium sp. D11] Length = 117 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 5/93 (5%) Query: 18 FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN--QEVKI 75 S K + + I ++ + E I+I F +F + ++ +G + + VK Sbjct: 25 SNTSEKRARILIENFGEAIKETLLTEEIIRIKKFGSFLLTERKEWIGTLPGSGGKKRVKF 84 Query: 76 DPRRVVVFKASSILKKRIMDD---MRGRKCNKD 105 + + FK ++K++++D MRG K K+ Sbjct: 85 SATKTLRFKFPRDVRKKLLEDIEKMRGEKNEKN 117 >gi|153806941|ref|ZP_01959609.1| hypothetical protein BACCAC_01217 [Bacteroides caccae ATCC 43185] gi|149130061|gb|EDM21271.1| hypothetical protein BACCAC_01217 [Bacteroides caccae ATCC 43185] Length = 165 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S + K I+ LS D + L + E++ + F TF + K + G Sbjct: 34 SQISKEIAAYSSLSPGDVKNTLDNLVTVVSQHLQSSESVTLDGFGTFRLVMKSNGKGV-- 91 Query: 68 QTNQEVKID-PRRVVVFKA 85 +T +V V F Sbjct: 92 KTVDDVSAAQASLTVRFLP 110 >gi|153809594|ref|ZP_01962262.1| hypothetical protein BACCAC_03912 [Bacteroides caccae ATCC 43185] gi|149127771|gb|EDM18995.1| hypothetical protein BACCAC_03912 [Bacteroides caccae ATCC 43185] Length = 174 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +I + L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 MAAAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|121593962|ref|YP_985858.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] gi|120606042|gb|ABM41782.1| histone family protein DNA-binding protein [Acidovorax sp. JS42] Length = 179 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 +T+T+S LV ++++ + K + L + + S +G A + V++ Sbjct: 80 ETLTKSALVAHLAEQSNVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVP 139 Query: 59 -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + +A LK Sbjct: 140 AKPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 177 >gi|229076719|ref|ZP_04209639.1| hypothetical protein bcere0024_54270 [Bacillus cereus Rock4-18] gi|228706381|gb|EEL58634.1| hypothetical protein bcere0024_54270 [Bacillus cereus Rock4-18] Length = 49 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKAS 86 T V++ R G N +T + +KI P ++ FK S Sbjct: 16 TSEVQELAERNGHNPKTGEAMKILPSKLPGFKIS 49 >gi|329965275|ref|ZP_08302205.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057] gi|328523295|gb|EGF50395.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057] Length = 160 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 T D+ +++ G R + I ++ G ++ + +F Sbjct: 36 TERDVAHQVAQRTGFHRGVVEAVLAATGEIIEEALSEGHSVTLRGIGSFQT 86 >gi|325268756|ref|ZP_08135384.1| hypothetical protein HMPREF9141_0593 [Prevotella multiformis DSM 16608] gi|324988924|gb|EGC20879.1| hypothetical protein HMPREF9141_0593 [Prevotella multiformis DSM 16608] Length = 144 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +T +L +I + SR D V L +EI GE + + FH+ Sbjct: 31 VTTEELADAIQENTSFSRGDVRGLVIALVDEISYRLREGETVVLEGLGRFHL 82 >gi|153809610|ref|ZP_01962278.1| hypothetical protein BACCAC_03928 [Bacteroides caccae ATCC 43185] gi|149127760|gb|EDM18985.1| hypothetical protein BACCAC_03928 [Bacteroides caccae ATCC 43185] Length = 173 Score = 43.7 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 25/59 (42%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +T+ + + I+++ L+ D + L + + + + +++ TF + K Sbjct: 29 GRTVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMVAKA 87 >gi|237713254|ref|ZP_04543735.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406605|ref|ZP_06083154.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647082|ref|ZP_06724691.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294807875|ref|ZP_06766657.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229446721|gb|EEO52512.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355308|gb|EEZ04399.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637579|gb|EFF55988.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294444937|gb|EFG13622.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 161 Score = 43.7 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 16/109 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------HVKQKGSRV 63 L +++ G+ R + + + + G ++K+ F +F + K V Sbjct: 38 LCDEVNQRTGVHRAMVDVVLKGVQDTMVSFLEEGFSVKLGEFGSFRPAINAESQDKAEDV 97 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 N + RR +VF K+ + + D+VT+P+G Sbjct: 98 SVN-----TII---RRKIVFTPGGAFKEML--GSASIELFGDNVTNPNG 136 >gi|29465850|gb|AAM97523.1| basic chromosomal protein HCC4 [Crypthecodinium cohnii] Length = 123 Score = 43.7 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K +T++ L ++++ +S+KD + +L + + I ++K + Sbjct: 28 GKAMTKTGLAEALANATEVSKKDCASIIESLATICATEVKKTGKLTIPGLVMVKTRKKPA 87 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILK 90 + G+ + V + + VV LK Sbjct: 88 TKAGKREMFGKVVLVKAQPAKTVVKAYPVKALK 120 >gi|33593070|ref|NP_880714.1| DNA-binding protein Bph2 [Bordetella pertussis Tohama I] gi|33596366|ref|NP_884009.1| DNA-binding protein Bph2 [Bordetella parapertussis 12822] gi|33563445|emb|CAE42326.1| DNA-binding protein Bph2 [Bordetella pertussis Tohama I] gi|33566135|emb|CAE37035.1| DNA-binding protein Bph2 [Bordetella parapertussis] gi|332382482|gb|AEE67329.1| DNA-binding protein Bph2 [Bordetella pertussis CS] Length = 105 Score = 43.7 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 + + +S L+ + + G+ K + L + + S +G + V++ Sbjct: 6 EALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVP 65 Query: 59 -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 66 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 103 >gi|212217925|ref|YP_002304712.1| DNA-binding protein [Coxiella burnetii CbuK_Q154] gi|212012187|gb|ACJ19567.1| bacterial DNA-binding protein [Coxiella burnetii CbuK_Q154] Length = 78 Score = 43.7 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 26 TRFVTTLFNEICDSAVRG--EAIKISSFATFHVKQK---GSRVGRNLQTNQEVKI---DP 77 + + L + + +G + VK+K +R G N T + + Sbjct: 2 SAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKARKGINPFTGEMMTFKAKPA 61 Query: 78 RRVVVFKASSILKK 91 R VV +A LK+ Sbjct: 62 RNVVKVRALKRLKE 75 >gi|126729594|ref|ZP_01745407.1| DNA-binding protein HU, putative [Sagittula stellata E-37] gi|126709713|gb|EBA08766.1| DNA-binding protein HU, putative [Sagittula stellata E-37] Length = 164 Score = 43.7 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV-KQKGSRVG 64 + +LV + G+ ++D+ + + ++ G + ++ F V + K + G Sbjct: 80 KKELVDLAVERSGIKKRDAKPAIEAALAVLGEALSEGRELNLAPFGKMKVTRMKKAGNG 138 >gi|258648450|ref|ZP_05735919.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260851205|gb|EEX71074.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 197 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 ++ +T +DL + E S D V I G +++I TF Sbjct: 26 VNNVLTLNDLAARVESETSFSVSDVKGLVEAFQKYIAVELSLGHSVRIDGLGTFS 80 >gi|285017827|ref|YP_003375538.1| bacterial DNA-binding protein [Xanthomonas albilineans GPE PC73] gi|283473045|emb|CBA15550.1| putative bacterial dna-binding protein [Xanthomonas albilineans] Length = 132 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 8/96 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISSFATF---HVKQK 59 +++S LV I++ G+ KD +T+L + + S + + + V K Sbjct: 35 LSKSALVAHIAETSGVIAKDVRAVMTSLEHAMAGSISKKGAGSFTLPGLLKITSTQVAAK 94 Query: 60 GSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G N T +E + + LK Sbjct: 95 AKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130 >gi|317405764|gb|EFV86055.1| histone family protein DNA-binding protein [Achromobacter xylosoxidans C54] Length = 152 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59 + ++ L+ I ++ G+ K + +L + S +G + V++ K Sbjct: 55 LNKTQLIAYIVEQSGVEAKSVKAVLASLETSVLSSVDKKGAGEFTLPGLFKVAVQKVPAK 114 Query: 60 GSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 R G++ T +E V + LK Sbjct: 115 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 150 >gi|311107989|ref|YP_003980842.1| histone-like DNA-binding protein [Achromobacter xylosoxidans A8] gi|310762678|gb|ADP18127.1| histone-like DNA-binding protein [Achromobacter xylosoxidans A8] Length = 156 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59 + ++ L+ I ++ G+ K + +L + S +G + V++ K Sbjct: 59 LNKTQLIAYIVEQSGVEAKSVKAVLASLETSVLSSVDKKGAGEFTLPGLFKVAVQKVPAK 118 Query: 60 GSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 R G++ T +E V + LK Sbjct: 119 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 154 >gi|260592134|ref|ZP_05857592.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] gi|260535915|gb|EEX18532.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] Length = 148 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG-RNL 67 D+ K I+ L+R D +T + G ++++ F T ++ S G N Sbjct: 34 DIAKDIAGRSSLTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGT--MRLTLSSTGAANE 91 Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDD 96 ++ + I PR V F LK + D+ Sbjct: 92 KSFKTETIKPR--VTFTPGVELKAALRDN 118 >gi|187928584|ref|YP_001899071.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|241114161|ref|YP_002973636.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] gi|187725474|gb|ACD26639.1| histone family protein DNA-binding protein [Ralstonia pickettii 12J] gi|240868734|gb|ACS66392.1| histone family protein DNA-binding protein [Ralstonia pickettii 12D] Length = 130 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T T++ LV ++++ L K + L N I + + A + + F V Sbjct: 32 TFTKASLVSHLAEQTELEAKAVKSVLLHLENTILSALHKKGAGEFTLPGLFKVVSVKVPA 91 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 R G+N T QE V + +K Sbjct: 92 TKRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDA 128 >gi|1773080|gb|AAB40156.1| BpH2 [Bordetella pertussis 18323] Length = 145 Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 + + +S L+ + + G+ K + L + + S +G + V++ Sbjct: 46 EALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVP 105 Query: 59 -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 106 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 143 >gi|53713141|ref|YP_099133.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|60681406|ref|YP_211550.1| hypothetical protein BF1917 [Bacteroides fragilis NCTC 9343] gi|253566808|ref|ZP_04844260.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265763236|ref|ZP_06091804.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|11023526|gb|AAG26483.1|AF285774_23 unknown [Bacteroides fragilis] gi|52216006|dbj|BAD48599.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|60492840|emb|CAH07615.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251944371|gb|EES84860.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255844|gb|EEZ27190.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162863|emb|CBW22410.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 157 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 + K +T L + I+++ L+ D + L + + ++++ TF +K Sbjct: 28 VGKMVTSQQLAEVIAEKSSLTPGDVHNVIRNLMTAMRKELLNSRSVRLEGLGTFTMK 84 >gi|300691926|ref|YP_003752921.1| histone-like bacterial DNA-binding protein [Ralstonia solanacearum PSI07] gi|299078986|emb|CBJ51646.2| putative histone-like bacterial DNA-binding protein [Ralstonia solanacearum PSI07] Length = 131 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFA---TFHVKQ 58 T T++ LV ++++ L K + L N I + +G + + V Sbjct: 31 TFTKASLVNHLAEQAELDAKSVKAVLLHLENTILGALHKKGAGEFTLPGLFKVTSVKVPA 90 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 R G+N T QE V + +K Sbjct: 91 TKRRFGKNPFTGQEQWFEAKPATVRVKVRPLKKVKDA 127 >gi|260591218|ref|ZP_05856676.1| putative DNA-binding protein [Prevotella veroralis F0319] gi|260537083|gb|EEX19700.1| putative DNA-binding protein [Prevotella veroralis F0319] Length = 139 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L +I + +R D V L +EI +GE + + FH+ Sbjct: 35 ELADAIQENTSFTRGDVRGLVIALIDEISYRLRQGETVVLDGLGRFHL 82 >gi|150008310|ref|YP_001303053.1| hypothetical protein BDI_1679 [Parabacteroides distasonis ATCC 8503] gi|298375112|ref|ZP_06985069.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|149936734|gb|ABR43431.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|298267612|gb|EFI09268.1| DNA-binding protein [Bacteroides sp. 3_1_19] Length = 206 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQK 59 +K + D+ + IS+ ++ D + L + I G ++++ F VK K Sbjct: 34 TKRMN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSK 91 Query: 60 G--SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + G N +++ + V F+ S LK+ + + Sbjct: 92 EVTDQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 124 >gi|317476787|ref|ZP_07936030.1| hypothetical protein HMPREF1016_03014 [Bacteroides eggerthii 1_2_48FAA] gi|316906962|gb|EFV28673.1| hypothetical protein HMPREF1016_03014 [Bacteroides eggerthii 1_2_48FAA] Length = 160 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L +SI+++ L+ D + L + + + ++++ TF +K + G Sbjct: 37 LAESIAEKSSLTPGDVQNVIRNLMSTMRMHLLNSRTVRLNGLGTFTMKARTRGKG 91 >gi|218129998|ref|ZP_03458802.1| hypothetical protein BACEGG_01581 [Bacteroides eggerthii DSM 20697] gi|217987801|gb|EEC54127.1| hypothetical protein BACEGG_01581 [Bacteroides eggerthii DSM 20697] Length = 160 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L +SI+++ L+ D + L + + + ++++ TF +K + G Sbjct: 37 LAESIAEKSSLTPGDVQNVIRNLMSTMRMHLLNSRTVRLNGLGTFTMKARTRGKG 91 >gi|262384571|ref|ZP_06077705.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301309182|ref|ZP_07215126.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|262293864|gb|EEY81798.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300832864|gb|EFK63490.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 206 Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQK 59 +K + D+ + IS+ ++ D + L + I G ++++ F VK K Sbjct: 34 TKRMN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSK 91 Query: 60 G--SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + G N +++ + V F+ S LK+ + + Sbjct: 92 EVTDQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 124 >gi|255008633|ref|ZP_05280759.1| hypothetical protein Bfra3_05802 [Bacteroides fragilis 3_1_12] gi|313146368|ref|ZP_07808561.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135135|gb|EFR52495.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 159 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 + K +T L + I+++ L+ D + L + + ++++ TF +K Sbjct: 28 VGKMVTSQQLAEVIAEKSSLTPGDVHNVIRNLMTAMRKELLNSRSVRLEGLGTFTMK 84 >gi|38637948|ref|NP_942922.1| histone-like protein [Ralstonia eutropha H16] gi|32527286|gb|AAP86036.1| histone-like protein [Ralstonia eutropha H16] Length = 147 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T +S L+ + + L +K +T L N + + + A + + F V Sbjct: 49 TFNKSSLLAHLVAQTELDKKTVQTVLTHLENTMVSAIHKKGAGEFTFPGLFKVSAIQVPA 108 Query: 59 KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G+N T QE V +A LK Sbjct: 109 TKKRFGKNPFTGQEQWFAAKPASVKVKVRAMKKLKDA 145 >gi|29345691|ref|NP_809194.1| putative DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|253567678|ref|ZP_04845089.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29337584|gb|AAO75388.1| putative DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251841751|gb|EES69831.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 213 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+ L I L D + L NE+ + G+ + + F V Sbjct: 30 ETVNTEKLAYRIHDRSTLRVSDIISTLEELKNEVAQCLLEGKKVHVDGLGFFQVTLSCEE 89 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 RN + + ++ + + FKA LK Sbjct: 90 EIRNPKDKRVHRVKL-KAIKFKADKELK 116 >gi|329954498|ref|ZP_08295589.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328527466|gb|EGF54463.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 162 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L +SI+++ L+ D + L + + + ++++ TF +K + G Sbjct: 37 LAESIAEKSSLTPGDVQNVIRNLMSTMRMHLLNSRTVRLNGLGTFTMKARTRGKG 91 >gi|56550655|ref|YP_161721.1| hypothetical protein RMe0099 [Cupriavidus metallidurans CH34] gi|94152598|ref|YP_582000.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34] gi|56410361|emb|CAI30243.1| hypothetical protein RMe0099 [Cupriavidus metallidurans CH34] gi|93358964|gb|ABF13050.1| Histone-like DNA-binding protein [Cupriavidus metallidurans CH34] Length = 140 Score = 43.4 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T +S L+ + + L +K + L N I + + A + + F V Sbjct: 42 TFNKSSLLAHLVTQTELDKKTVQTVLAHLENTIASAIHKKGAGEFTFPGLFKVSAIQVPA 101 Query: 59 KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R GRN T + V + LK Sbjct: 102 TKKRFGRNPFTGADQWFAAKPASVKVKVRPLKKLKDA 138 >gi|150003152|ref|YP_001297896.1| hypothetical protein BVU_0566 [Bacteroides vulgatus ATCC 8482] gi|149931576|gb|ABR38274.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 212 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 14/97 (14%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI DL+ + +SR D V L + + + G+ I I+ F V Sbjct: 29 QTIHSKDLIHEATLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83 Query: 63 VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRI 93 +G N + T V+I V F+ KK I Sbjct: 84 IGSTESENPKKMTRGTVQITG---VNFQPEKSFKKSI 117 >gi|254882436|ref|ZP_05255146.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294776442|ref|ZP_06741919.1| putative DNA-binding protein [Bacteroides vulgatus PC510] gi|254835229|gb|EET15538.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294449705|gb|EFG18228.1| putative DNA-binding protein [Bacteroides vulgatus PC510] Length = 212 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 14/97 (14%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI DL+ + +SR D V L + + + G+ I I+ F V Sbjct: 29 QTIHSKDLIHEATLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83 Query: 63 VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRI 93 +G N + T V+I V F+ KK I Sbjct: 84 IGSTESENPKKMTRGTVQITG---VNFQPEKSFKKSI 117 >gi|237715759|ref|ZP_04546240.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408767|ref|ZP_06085313.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645527|ref|ZP_06723223.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806587|ref|ZP_06765423.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229444468|gb|EEO50259.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353632|gb|EEZ02726.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639101|gb|EFF57423.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446202|gb|EFG14833.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 174 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +I + L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 MATAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|298384591|ref|ZP_06994151.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|298262870|gb|EFI05734.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 213 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T+ L I L D + L NE+ + G+ + + F V Sbjct: 30 ETVNTEKLAYRIHDRSTLRVSDIISTLEELKNEVAQCLLEGKKVHVDGLGFFQVTLSCEE 89 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILK 90 RN + + ++ + + FKA LK Sbjct: 90 EIRNPKDKRVHRVKL-KAIKFKADKELK 116 >gi|257469786|ref|ZP_05633878.1| hypothetical protein FulcA4_10622 [Fusobacterium ulcerans ATCC 49185] gi|317064016|ref|ZP_07928501.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689692|gb|EFS26527.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S K+ + ++ + + + + + F ++ SR + +E P+ V Sbjct: 18 SHKEVKEKIDLFWDVLLKALEEDKKVVFKDWGVFEKREIKSRKIKVPMWEEERYTKPKEV 77 Query: 81 VVFKASSIL 89 + F+A L Sbjct: 78 IKFRAGKGL 86 >gi|256839403|ref|ZP_05544912.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738333|gb|EEU51658.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 206 Score = 43.0 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQK 59 +K + D+ + IS+ ++ D + L + I G ++++ F VK K Sbjct: 34 TKRMN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSK 91 Query: 60 G--SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + G N +++ + V F+ S LK+ + + Sbjct: 92 EVTDQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 124 >gi|282860345|ref|ZP_06269413.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010] gi|282586843|gb|EFB92080.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010] Length = 142 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL +I + +R D V L +EI G+ + + FH+ Sbjct: 35 DLADAIQESTSFTRGDVRGIVMALIDEIGFQLANGKTVALDGLGRFHL 82 >gi|281420480|ref|ZP_06251479.1| putative DNA-binding protein [Prevotella copri DSM 18205] gi|281405253|gb|EFB35933.1| putative DNA-binding protein [Prevotella copri DSM 18205] Length = 199 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 6/97 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T L + I L++ D + L + + + G I F + Sbjct: 31 MTEKQLQEKIQNRCSLTKGDVAAVLAELHDLMVEEFSMGRRFYIPEIGYFSMSASLEMPE 90 Query: 65 RNLQ---TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 N T +EV+I + F+ L + + ++ Sbjct: 91 ENPDKKITGKEVRITG---INFRPEGKLMEEVQRNVH 124 >gi|255015370|ref|ZP_05287496.1| hypothetical protein B2_15783 [Bacteroides sp. 2_1_7] gi|262381970|ref|ZP_06075108.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262382208|ref|ZP_06075346.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301310506|ref|ZP_07216445.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|262297147|gb|EEY85077.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297385|gb|EEY85315.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300832080|gb|EFK62711.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 155 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 22/50 (44%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 T++ D I++E L++ D + + + +G +++ F T Sbjct: 31 TLSTQDAADQIAEESSLTKGDVLNVLDRYQRYVIKNLQKGYKVELLGFGT 80 >gi|253584314|ref|ZP_04861512.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834886|gb|EES63449.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 97 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + +K L S K++ + ++ + + + + ++ F K+ + Sbjct: 1 MTEVEFIKFYRDRNNLKSIKEAKEKIDLFWSALLKALDEDGKVILKNWGVFEKKEVKPKK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 L+ N+ I+ + + F+ + L+ + D Sbjct: 61 MMILKMNEIRLIEGKEKIRFRIGTGLRNLVNGD 93 >gi|157093131|gb|ABV22220.1| major basic nuclear protein [Karlodinium micrum] Length = 108 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDVLNSLASIATAEVKKAGIFSIPGLCRIKTRTKPAT 73 Query: 63 VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 RN +EVK+ R +V ++ LKK+I Sbjct: 74 KAGVRN-VFGKEVKVKAKPARTIVKGYCAAALKKQI 108 >gi|319640460|ref|ZP_07995182.1| hypothetical protein HMPREF9011_00779 [Bacteroides sp. 3_1_40A] gi|317387947|gb|EFV68804.1| hypothetical protein HMPREF9011_00779 [Bacteroides sp. 3_1_40A] Length = 204 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 14/97 (14%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI DL+ + +SR D V L + + + G+ I I+ F V Sbjct: 21 QTIHSKDLIHEATLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 75 Query: 63 VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRI 93 +G N + T V+I V F+ KK I Sbjct: 76 IGSTESENPKKMTRGTVQITG---VNFQPEKSFKKSI 109 >gi|293606886|ref|ZP_06689234.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814738|gb|EFF73871.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 152 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 8/96 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59 + ++ LV I ++ G+ K + +L + S +G + V++ K Sbjct: 55 MNKTQLVAYIVEQSGVEAKAVKAVLASLETSVLGSVDKKGAGEFTLPGLFKVAVQKVPAK 114 Query: 60 GSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 R G++ T E V + LK Sbjct: 115 AKRFGKDPFTGVERWFPAKPASVKVKVRPLKKLKDA 150 >gi|302345862|ref|YP_003814215.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845] gi|302149209|gb|ADK95471.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845] Length = 144 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL SI + SR D V L +EI +GE + + FH+ Sbjct: 35 DLADSIQENTSFSRGDVRGLVIALIDEISYRLRQGETVALEGLGRFHL 82 >gi|149913776|ref|ZP_01902308.1| hypothetical protein RAZWK3B_17273 [Roseobacter sp. AzwK-3b] gi|149812060|gb|EDM71891.1| hypothetical protein RAZWK3B_17273 [Roseobacter sp. AzwK-3b] Length = 166 Score = 43.0 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 20/47 (42%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 + DL+ + + GL +KD+ V + + + + G + + Sbjct: 79 KKDLIDLVVERSGLKKKDAKPAVDAVIDVLAELIGEGRDLNLPPLGK 125 >gi|298483440|ref|ZP_07001617.1| DNA-binding protein [Bacteroides sp. D22] gi|298270388|gb|EFI11972.1| DNA-binding protein [Bacteroides sp. D22] Length = 174 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +I + L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 MATAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|295087051|emb|CBK68574.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 174 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +I + L+ D + ++ S +G+ +KI TFH+ Sbjct: 40 MATAIESKSSLTAGDVKHTIEAFVEQLRLSLTQGDKVKIDGLGTFHI 86 >gi|288803209|ref|ZP_06408643.1| DNA-binding protein [Prevotella melaninogenica D18] gi|288334250|gb|EFC72691.1| DNA-binding protein [Prevotella melaninogenica D18] Length = 144 Score = 43.0 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL SI + SR D V L +EI +GE + + FH+ Sbjct: 35 DLADSIQENTSFSRGDVRGLVIALIDEISYRLRQGETVALEGLGRFHL 82 >gi|189464657|ref|ZP_03013442.1| hypothetical protein BACINT_01000 [Bacteroides intestinalis DSM 17393] gi|189436931|gb|EDV05916.1| hypothetical protein BACINT_01000 [Bacteroides intestinalis DSM 17393] Length = 182 Score = 43.0 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 20/46 (43%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + I++ LS+ D+ + L + E++ + F TF Sbjct: 56 QIAREIAEYSSLSKGDTKNTIDNLVRVMTTHLQSSESVTLDGFGTF 101 >gi|189467955|ref|ZP_03016740.1| hypothetical protein BACINT_04349 [Bacteroides intestinalis DSM 17393] gi|189436219|gb|EDV05204.1| hypothetical protein BACINT_04349 [Bacteroides intestinalis DSM 17393] Length = 160 Score = 43.0 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 18/51 (35%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 T D+ +++ G R + I ++ G ++ + +F Sbjct: 36 TERDVAHQVAQRTGFHRGVVEAVLAATGEIIEEALSDGHSVTLRGIGSFQT 86 >gi|257470886|ref|ZP_05634976.1| hypothetical protein FulcA4_16194 [Fusobacterium ulcerans ATCC 49185] gi|317065088|ref|ZP_07929573.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690764|gb|EFS27599.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 43.0 bits (101), Expect = 0.016, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S K+ + ++ + + + + + F ++ SR + E +P+ V Sbjct: 18 SHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKRETKSRKIKMPMWKGERYTEPKEV 77 Query: 81 VVFKASSIL 89 + F+A L Sbjct: 78 IKFRAGKGL 86 >gi|303236739|ref|ZP_07323318.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] gi|302482907|gb|EFL45923.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] Length = 141 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 23/48 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL ++I + +R + T + L +EI S +G + + FH+ Sbjct: 35 DLAEAIQENTSFTRGEVTGIIMALVDEISYSLSQGNTVVLDGLGRFHL 82 >gi|329955710|ref|ZP_08296618.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328526113|gb|EGF53137.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 162 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 L SI K +++ D + L EI + G+ +K++ T Sbjct: 40 LAASIQKNCAMTKGDVKHVIEALVEEIQTNLANGDKVKLNQLGT 83 >gi|288802083|ref|ZP_06407524.1| putative non-specific DNA binding protein [Prevotella melaninogenica D18] gi|288335518|gb|EFC73952.1| putative non-specific DNA binding protein [Prevotella melaninogenica D18] Length = 157 Score = 42.6 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 1 MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 M+ T ++ + +VK + K +S D + L E+ ++ G +++ +F + Sbjct: 24 MAPTTPMSLAQIVKRVEKRSTVSSADVKAVLDALQYEVMEALENGNTVRLGDLGSFRLTM 83 Query: 59 KGS 61 K Sbjct: 84 KSQ 86 >gi|325269362|ref|ZP_08135979.1| hypothetical protein HMPREF9141_1189 [Prevotella multiformis DSM 16608] gi|324988283|gb|EGC20249.1| hypothetical protein HMPREF9141_1189 [Prevotella multiformis DSM 16608] Length = 202 Score = 42.6 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 18/94 (19%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG-----SR- 62 L + I + L+R D V+ L +EI + G A+ + F + KG R Sbjct: 34 QLGEEIQRATTLTRTDILGAVSALKDEIVLQLMSGNAVHLPGLGYFSIAVKGDLYEDPRS 93 Query: 63 ---VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 +N + R V F+ + +K+R+ Sbjct: 94 HHLRLQNPK---------VRTVKFRPDTEMKERL 118 >gi|224538051|ref|ZP_03678590.1| hypothetical protein BACCELL_02941 [Bacteroides cellulosilyticus DSM 14838] gi|224520341|gb|EEF89446.1| hypothetical protein BACCELL_02941 [Bacteroides cellulosilyticus DSM 14838] Length = 167 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L K I+ G S D + L + I ++ GE++ I +FH+ Sbjct: 40 LAKRIAHRTGRSEGDVKGILADLPHFIEEALKNGESVSIKGLGSFHI 86 >gi|225174921|ref|ZP_03728918.1| hypothetical protein DealDRAFT_0773 [Dethiobacter alkaliphilus AHT 1] gi|225169561|gb|EEG78358.1| hypothetical protein DealDRAFT_0773 [Dethiobacter alkaliphilus AHT 1] Length = 51 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 24/44 (54%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48 + + DL +SI+ + KD+ F+TT + DS GE +++ Sbjct: 1 MIKIDLARSIADTMNIHTKDADTFLTTFTEIVADSLASGEFVRL 44 >gi|294674289|ref|YP_003574905.1| hypothetical protein PRU_1608 [Prevotella ruminicola 23] gi|294473342|gb|ADE82731.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 144 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 L + + L + D ++ L + D + +K++ F +F + +G Sbjct: 6 LAAIMQRNCTLKKADIVAVISELIETMADQLQDSKRVKLNGFGSFKIGIRGE 57 >gi|260592294|ref|ZP_05857752.1| putative DNA-binding protein [Prevotella veroralis F0319] gi|260535744|gb|EEX18361.1| putative DNA-binding protein [Prevotella veroralis F0319] Length = 146 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 4/105 (3%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 D+ K I+ L+R D +T + G ++++ F T + N + Sbjct: 33 DIAKDIAGRSSLTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGTMRLTLSSEGAA-NEK 91 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 + + I PR V F S LK + D+ K+ +T GS Sbjct: 92 SFKTETIKPR--VTFTPSVELKAGLRDNSY-ETVKKESLTPAPGS 133 >gi|254437027|ref|ZP_05050521.1| hypothetical protein OA307_1897 [Octadecabacter antarcticus 307] gi|198252473|gb|EDY76787.1| hypothetical protein OA307_1897 [Octadecabacter antarcticus 307] Length = 187 Score = 42.6 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 19/47 (40%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 + + + + E GL +KD V + + + + GE + + Sbjct: 99 KPEFIDRVMAETGLKKKDVKPVVEAMLAVLGRALIAGEELIVPPLGK 145 >gi|158079356|ref|YP_001504169.1| putative integration host factor [Enterococcus phage phiEF24C] gi|157890200|dbj|BAF81328.1| putative integration host factor [Enterococcus phage phiEF24C] Length = 103 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 KTI R+D+ ++IS G KD + + + + +G ++K ++K+K + Sbjct: 5 KTINRTDIARTISHHTGYRMKDILKILEIEDEVVAQAVSQGISVKNHKLWKLNIKKKPEK 64 Query: 63 V---GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 V G N ++ + VV F S LK+ I + K Sbjct: 65 VAWDGIN---SKSFIQPEKYVVKFVPLSKLKESIDTYNKESK 103 >gi|33602348|ref|NP_889908.1| DNA-binding protein Bph2 [Bordetella bronchiseptica RB50] gi|33576787|emb|CAE33866.1| DNA-binding protein Bph2 [Bordetella bronchiseptica RB50] Length = 112 Score = 42.6 bits (100), Expect = 0.019, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 + + +S L+ + + G+ K + L + + S +G + V++ Sbjct: 13 EALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVP 72 Query: 59 -KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 73 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 110 >gi|328947567|ref|YP_004364904.1| hypothetical protein Tresu_0666 [Treponema succinifaciens DSM 2489] gi|328447891|gb|AEB13607.1| hypothetical protein Tresu_0666 [Treponema succinifaciens DSM 2489] Length = 124 Score = 42.6 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 14/98 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV------KQKGSRV 63 L K ISK L+ D + + +++ I+++ F F + +K V Sbjct: 35 LAKEISKSCTLTPADIVAVIESFLDKMPQYLKSSNRIRLNKFGIFKLSFSSVGHEKAEDV 94 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 N I RV+ F S+ LKK + D RK Sbjct: 95 SSN-------DIKNLRVL-FTPSAELKKELSDVSYTRK 124 >gi|325925539|ref|ZP_08186927.1| putative DNA-binding protein [Xanthomonas perforans 91-118] gi|325544043|gb|EGD15438.1| putative DNA-binding protein [Xanthomonas perforans 91-118] Length = 141 Score = 42.6 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISS---FATFHVK 57 + ++++ LV I++ L+ KD + +L S + + I T HV Sbjct: 42 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVP 101 Query: 58 QKGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + + LK Sbjct: 102 AKPKRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 139 >gi|212694667|ref|ZP_03302795.1| hypothetical protein BACDOR_04198 [Bacteroides dorei DSM 17855] gi|212663168|gb|EEB23742.1| hypothetical protein BACDOR_04198 [Bacteroides dorei DSM 17855] Length = 156 Score = 42.6 bits (100), Expect = 0.021, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I K ++R D + L + I ++ GE ++++ TF + Sbjct: 52 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 99 >gi|29347431|ref|NP_810934.1| putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|253570641|ref|ZP_04848049.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29339331|gb|AAO77128.1| conserved hypothetical protein, putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251839590|gb|EES67673.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 175 Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK + + + I+++ L+ D + L + + + + +++ TF + K Sbjct: 29 SKMVNTQKMAELIAEKASLTPGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAG 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|255026107|ref|ZP_05298093.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL J2-003] Length = 40 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG 43 ++DLV S+++ LS+K + + V +F I S +G Sbjct: 3 NKTDLVNSVAELADLSKKXAAKAVEAVFETIQTSLSKG 40 >gi|298385111|ref|ZP_06994670.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14] gi|298262255|gb|EFI05120.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14] Length = 175 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK + + + I+++ L+ D + L + + + + +++ TF + K Sbjct: 29 SKMVNTQKMAELIAEKASLTPGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAG 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|294777315|ref|ZP_06742768.1| putative DNA-binding protein [Bacteroides vulgatus PC510] gi|294448844|gb|EFG17391.1| putative DNA-binding protein [Bacteroides vulgatus PC510] Length = 142 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I K ++R D + L + I ++ GE ++++ TF + Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85 >gi|150005202|ref|YP_001299946.1| hypothetical protein BVU_2672 [Bacteroides vulgatus ATCC 8482] gi|319642715|ref|ZP_07997359.1| hypothetical protein HMPREF9011_02959 [Bacteroides sp. 3_1_40A] gi|149933626|gb|ABR40324.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|317385650|gb|EFV66585.1| hypothetical protein HMPREF9011_02959 [Bacteroides sp. 3_1_40A] Length = 142 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I K ++R D + L + I ++ GE ++++ TF + Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85 >gi|270297143|ref|ZP_06203331.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272494|gb|EFA18368.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 189 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 5/99 (5%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + ++ + +E + V + + D +G ++I F K + N Sbjct: 34 KEFMERVFREEHMPHAMVVGIVQAITTTLGDWLAKGYTVEIEGLGFFSTTLKCTHPVMN- 92 Query: 68 QTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNK 104 +EV+ + + V F+ K+ + M + +K Sbjct: 93 --KKEVRAESVKMSTVKFRPGIEFKRYVAGKMELERADK 129 >gi|255691289|ref|ZP_05414964.1| putative non-specific DNA binding protein [Bacteroides finegoldii DSM 17565] gi|260623204|gb|EEX46075.1| putative non-specific DNA binding protein [Bacteroides finegoldii DSM 17565] Length = 172 Score = 42.2 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + + + I+++ L+ D + L + + + + +++ TF + K + Sbjct: 29 GKAVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|253583928|ref|ZP_04861126.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251834500|gb|EES63063.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 101 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 10/97 (10%), Positives = 34/97 (35%), Gaps = 1/97 (1%) Query: 1 MSKTITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 M + + + ++ L + K++ + + + + + + + + F K+ Sbjct: 1 MGEVMKEGEFIRFYRDRNCLRNIKEAKKKIDLFWTVVLKALDEDGKVLLKDWGVFEKKEV 60 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 R + +E ++F+ + LK + Sbjct: 61 APRKIMTPRMEKERVTKAGEKIIFRTGTGLKTLVNGA 97 >gi|187478977|ref|YP_787001.1| DNA-binding protein [Bordetella avium 197N] gi|115423563|emb|CAJ50099.1| DNA-binding protein [Bordetella avium 197N] Length = 105 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK----- 57 + + +S LV + + G+ K + L + + S + A + + F V Sbjct: 6 EALNKSQLVAHLVENTGVEAKTVKTVLAGLESAVLGSVDKKGAGEFTLAGLFKVSVQKVP 65 Query: 58 QKGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 66 AKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 103 >gi|237711062|ref|ZP_04541543.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237727423|ref|ZP_04557904.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265750650|ref|ZP_06086713.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229434279|gb|EEO44356.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229454906|gb|EEO60627.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237546|gb|EEZ22996.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 142 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I K ++R D + L + I ++ GE ++++ TF + Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85 >gi|254885034|ref|ZP_05257744.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837827|gb|EET18136.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 142 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I K ++R D + L + I ++ GE ++++ TF + Sbjct: 38 EMADRIQKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQI 85 >gi|270294809|ref|ZP_06201010.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274056|gb|EFA19917.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 207 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKGSR 62 ++L + I + L++ D + + L + + + G + + F + + Sbjct: 36 AELRRRIQERCSLTKTDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFHPVLTSTEPVTAA 95 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R +T ++K+ + + F+A +LK I Sbjct: 96 TKR--KT-TKIKL---KGIKFRADQVLKNEI 120 >gi|257470064|ref|ZP_05634156.1| hypothetical protein FulcA4_12035 [Fusobacterium ulcerans ATCC 49185] gi|317064288|ref|ZP_07928773.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689964|gb|EFS26799.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 95 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 38/95 (40%), Gaps = 1/95 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T ++ ++ K+ L + K+ + T + I + + + F ++ G+R Sbjct: 1 MTETEFIRFYKKKIKLRNVKEVQERIDTFWKTIFKALEIDGKVTFKDWGVFEKRKHGARR 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 + + + V+ F+A + +I + R Sbjct: 61 YILASLGIDNMTENKEVIKFRAGKGFENKINKEKR 95 >gi|237721180|ref|ZP_04551661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450015|gb|EEO55806.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 166 Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L S+ ++ LS D +T L + + G+++ I F F + R ++T Sbjct: 38 LAYSMKEKSSLSLGDIQSVLTNLVEAMRAALFDGKSVNIRDFGVFSLSA----TTRGVET 93 Query: 70 NQEVKIDPRRVV--VFKASSILKKRIMDDMRGRKCNKDDVTSP 110 +E + + V F+ SS ++ + G K D+ +P Sbjct: 94 KEECTMKNIKSVNINFRPSSSVRPNLTSTRAGEKIEFLDLDAP 136 >gi|253572295|ref|ZP_04849698.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838070|gb|EES66158.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 205 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D ++ +S+ + + +E+ ++ G +++ F + K + Sbjct: 34 KKDFIERVSRHQPFPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM- 92 Query: 67 LQTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 T +E++ + R V + S KK+I ++ + V + Sbjct: 93 --TKKEIRAESIRFDNVHLRTSKEFKKKIKREIELERVENSKVKT 135 >gi|299148107|ref|ZP_07041170.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|298514290|gb|EFI38176.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 208 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRVG 64 DL++ I+ G + D +T + E+ G+++K+ TF + + R Sbjct: 34 DLIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFSPSLALCKDKERE- 92 Query: 65 RNLQTNQ 71 +T + Sbjct: 93 ---KTGE 96 >gi|293370595|ref|ZP_06617147.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292634329|gb|EFF52866.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|295086407|emb|CBK67930.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 165 Score = 42.2 bits (99), Expect = 0.024, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L ++K G R ++ L I D G ++ I TF Sbjct: 38 KELAVRMAKTTGFHRGQIEGILSELVESIQDLLSSGHSVTIEGLGTFQT 86 >gi|114565593|ref|YP_752747.1| hypothetical protein Swol_0017 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336528|gb|ABI67376.1| hypothetical protein Swol_0017 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 4 TITRSDLVKSISKEF--GLSRKDSTRFVTTLFNEICDSAVR 42 ++ + DL ++I+ + +++K++ F+T + I ++ + Sbjct: 45 SMIKIDLARAIADKVLPQITQKEADAFLTAFMDIIGEALKK 85 >gi|260172256|ref|ZP_05758668.1| hypothetical protein BacD2_10362 [Bacteroides sp. D2] gi|315920562|ref|ZP_07916802.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694437|gb|EFS31272.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 165 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 18/49 (36%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L ++K G R ++ L I D G ++ I TF Sbjct: 38 KELAVRMAKTTGFHRGQIEGILSELVESIQDLLSSGHSVTIEGLGTFQT 86 >gi|237707889|ref|ZP_04538370.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237723439|ref|ZP_04553920.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229438189|gb|EEO48266.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229458095|gb|EEO63816.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 212 Score = 42.2 bits (99), Expect = 0.025, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 14/102 (13%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI DL+ + +SR D V L + + + G+ I I+ F V Sbjct: 29 QTIHSKDLIHETTLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83 Query: 63 VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +G N + T V+I + F+ KK I++ Sbjct: 84 IGSTESENPKKMTRGTVQITG---INFQPEKSFKKSIINRAH 122 >gi|212691703|ref|ZP_03299831.1| hypothetical protein BACDOR_01198 [Bacteroides dorei DSM 17855] gi|265758290|ref|ZP_06090972.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212665743|gb|EEB26315.1| hypothetical protein BACDOR_01198 [Bacteroides dorei DSM 17855] gi|263233432|gb|EEZ19083.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 212 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 14/102 (13%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +TI DL+ + +SR D V L + + + G+ I I+ F V Sbjct: 29 QTIHSKDLIHETTLYTSVSRSDWAAVVEGLIDILSEKLGDGKRIHINGLGYFSVS----- 83 Query: 63 VG----RNLQ--TNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +G N + T V+I + F+ KK I++ Sbjct: 84 IGSTESENPKKMTRGTVQITG---INFQPEKSFKKSIINRAH 122 >gi|224538096|ref|ZP_03678635.1| hypothetical protein BACCELL_02986 [Bacteroides cellulosilyticus DSM 14838] gi|224520307|gb|EEF89412.1| hypothetical protein BACCELL_02986 [Bacteroides cellulosilyticus DSM 14838] Length = 169 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L + +++ G+ D + L I ++ GE++ I +F++ Sbjct: 40 LAQRMARRKGMGEGDVQSVLVDLPKYIEEALSEGESVTIRGLGSFNL 86 >gi|317478851|ref|ZP_07938002.1| hypothetical protein HMPREF1007_01118 [Bacteroides sp. 4_1_36] gi|316905027|gb|EFV26830.1| hypothetical protein HMPREF1007_01118 [Bacteroides sp. 4_1_36] Length = 166 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L + I+++ L+ D + L + + +++ TF +K + G Sbjct: 36 QLAEVIAEKSSLTPGDVHNVIRNLMTVMRSQLLNSRTVRLDGLGTFTMKARTRGKG 91 >gi|255015464|ref|ZP_05287590.1| hypothetical protein B2_16263 [Bacteroides sp. 2_1_7] Length = 170 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 12/96 (12%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKG-- 60 + D+ + IS+ ++ D + L + I G ++++ F VK K Sbjct: 1 MN--DICEYISECSSVTSADIKGVLEALTSYIGRELSYGYSVELEGLGHFSPSVKSKEVT 58 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + G N +++ + V F+ S LK+ + + Sbjct: 59 DQKG-NTKSSASI-----HGVNFRCSPRLKEMVKKN 88 >gi|160888332|ref|ZP_02069335.1| hypothetical protein BACUNI_00745 [Bacteroides uniformis ATCC 8492] gi|317477690|ref|ZP_07936885.1| hypothetical protein HMPREF1007_00001 [Bacteroides sp. 4_1_36] gi|156862009|gb|EDO55440.1| hypothetical protein BACUNI_00745 [Bacteroides uniformis ATCC 8492] gi|316906147|gb|EFV27906.1| hypothetical protein HMPREF1007_00001 [Bacteroides sp. 4_1_36] Length = 202 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 5/99 (5%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + ++ + +E + V + + D +G ++I F K + N Sbjct: 34 KEFMERVFREEHMPHAMVVGIVQAITTTLGDWLAKGYTVEIEGLGFFSTTLKCTHPVMN- 92 Query: 68 QTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNK 104 +EV+ + + V F+ K+ + M + +K Sbjct: 93 --KKEVRAESVKMSTVKFRPGIEFKRYVAGKMELERADK 129 >gi|160889840|ref|ZP_02070843.1| hypothetical protein BACUNI_02271 [Bacteroides uniformis ATCC 8492] gi|156860832|gb|EDO54263.1| hypothetical protein BACUNI_02271 [Bacteroides uniformis ATCC 8492] Length = 166 Score = 42.2 bits (99), Expect = 0.026, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L + I+++ L+ D + L + + +++ TF +K + G Sbjct: 36 QLAEVIAEKSSLTPGDVHNVIRNLMTVMRSQLLNSRTVRLDGLGTFTMKARTRGKG 91 >gi|88597555|ref|ZP_01100789.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25] gi|88190147|gb|EAQ94122.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25] Length = 42 Score = 42.2 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 +R R T + +K+ RV FK LK+ + +K Sbjct: 1 AREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 41 >gi|294675404|ref|YP_003576020.1| DNA-binding protein [Prevotella ruminicola 23] gi|294472962|gb|ADE82351.1| putative DNA-binding protein [Prevotella ruminicola 23] Length = 174 Score = 42.2 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 L + + L + D ++ L + D + +K++ F +F + +G Sbjct: 36 LATIMQRNCTLKKADIVAVISELIETMADQLQDSKRVKLNGFGSFKIGIRGE 87 >gi|160883483|ref|ZP_02064486.1| hypothetical protein BACOVA_01452 [Bacteroides ovatus ATCC 8483] gi|237720259|ref|ZP_04550740.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293369885|ref|ZP_06616458.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|156111203|gb|EDO12948.1| hypothetical protein BACOVA_01452 [Bacteroides ovatus ATCC 8483] gi|229450811|gb|EEO56602.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292635062|gb|EFF53581.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 208 Score = 42.2 bits (99), Expect = 0.028, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 8/67 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRVG 64 DL++ I+ G + D +T + E+ G+++K+ TF + + R Sbjct: 34 DLIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFSPSLALCKDKERE- 92 Query: 65 RNLQTNQ 71 +T + Sbjct: 93 ---KTGE 96 >gi|257470163|ref|ZP_05634255.1| hypothetical protein FulcA4_12552 [Fusobacterium ulcerans ATCC 49185] gi|317064382|ref|ZP_07928867.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690058|gb|EFS26893.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 41.8 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + V K+ S+ K+ + + ++ + + + + + F K+ SR Sbjct: 1 MTEGEFV-RFYKKRNKSKSHKEVKKKIDLFWDVLLKALDEEKKVVFKYWGVFEEKEVKSR 59 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSIL 89 + +P++V+ F+A L Sbjct: 60 KVLVPIWKEARYTEPKKVIKFRAGKRL 86 >gi|317479093|ref|ZP_07938234.1| hypothetical protein HMPREF1007_01350 [Bacteroides sp. 4_1_36] gi|316904749|gb|EFV26562.1| hypothetical protein HMPREF1007_01350 [Bacteroides sp. 4_1_36] Length = 169 Score = 41.8 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 16/108 (14%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62 D+ + ++ L+ D +T + + G+++ I +F F + + + Sbjct: 37 DIAYVMKEKSSLTLGDIQSVLTNFVEAMITTLYSGQSVNIKNFGVFSLSARTAGVLDVKE 96 Query: 63 -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 +N++ VKI F+ SS ++ I G+K + D+ + Sbjct: 97 CTAKNIK---AVKI------NFRPSSTVRPDIAATRAGQKIDFYDLEA 135 >gi|327313337|ref|YP_004328774.1| putative DNA-binding protein [Prevotella denticola F0289] gi|326944528|gb|AEA20413.1| putative DNA-binding protein [Prevotella denticola F0289] Length = 202 Score = 41.8 bits (98), Expect = 0.028, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 18/107 (16%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG-----SR---- 62 + I L+ D V L +E+ + G A+ + F + KG R Sbjct: 37 EEIEHSTSLTHADLLGAVRALNDEVAHQLMAGNAVHLPGLGYFSLAVKGDIYEDPRSHHY 96 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 N EV R V F+ + +K+R+ + V+S Sbjct: 97 RLHNP----EV-----RTVKFRPDAEMKERLRSTEFNNITYEQGVSS 134 >gi|325855016|ref|ZP_08171732.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] gi|325483994|gb|EGC86934.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] Length = 202 Score = 41.8 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 18/107 (16%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG-----SR---- 62 + I L+ D V L +E+ + G A+ + F + KG R Sbjct: 37 EEIEHSTSLTHADLLGAVRALNDEVAHQLMSGNAVHLPGLGYFSLAVKGDIYEDPRSHHY 96 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 N EV R V F+ + +K+R+ + V+S Sbjct: 97 RLHNP----EV-----RTVKFRPDAEMKERLRSTEFNNITYEQGVSS 134 >gi|189426723|ref|YP_001953899.1| hypothetical protein Glov_3680 [Geobacter lovleyi SZ] gi|189422982|gb|ACD97379.1| hypothetical protein Glov_3680 [Geobacter lovleyi SZ] Length = 97 Score = 41.8 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T+ L + ++ + K + + +T L + I + G + I F K + Sbjct: 2 ALTKIKLARILAANLKIHEKVALQHITDLMDLIKMQLIEGNEVAIVGFGILKPAYKLLFI 61 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 +L+ + V + R+++ F AS +KK + Sbjct: 62 TASLEPFEPVSVQRRKIISFTASLSIKKALN 92 >gi|270294098|ref|ZP_06200300.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275565|gb|EFA21425.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 166 Score = 41.8 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 22/56 (39%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 L + I+++ L+ D + L + + +++ TF +K + G Sbjct: 36 QLAEVIAEKSSLTPGDVHNVIRNLMTVMRSQLLNSRTVRLDGLGTFTMKARTRGKG 91 >gi|29346834|ref|NP_810337.1| hypothetical protein BT_1424 [Bacteroides thetaiotaomicron VPI-5482] gi|29338731|gb|AAO76531.1| Histone-like bacterial DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 205 Score = 41.8 bits (98), Expect = 0.029, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D ++ +S+ + + +E+ ++ G +++ F + K + Sbjct: 34 KKDFIERVSRHQPFPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM- 92 Query: 67 LQTNQEVKIDPRR--VVVFKASSILKKRIMDDMR 98 T +E++ + R V + S KK+I ++ Sbjct: 93 --TKKEIRAESIRFDNVHLRTSKEFKKKIKREIE 124 >gi|193890995|gb|ACF28651.1| basic nuclear protein [Amphidinium carterae] Length = 90 Score = 41.8 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK---GSRVGRNLQ 68 K+++++ L KD +L + + + K++ + K +R G N Sbjct: 2 KTVAEKMELKPKDVKGIXQSLLELSTEQVKKSGSFKLAGMLNMKLISKPATKARKGLNPF 61 Query: 69 TNQEVKI---DPRRVVVFKASSILKKRIM 94 T + + V A LK+ + Sbjct: 62 TKEPCVFKAKPASKSVKVLALKKLKEALN 90 >gi|157093133|gb|ABV22221.1| major basic nuclear protein [Karlodinium micrum] Length = 108 Score = 41.8 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDVLNSLASIATAEVKKTGIFSIPGLCRIKTRTKPAT 73 Query: 63 VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 RN +EVK+ + +V ++ LKK+I Sbjct: 74 KAGVRN-VFGKEVKVKAKPAKTIVKGYCAAALKKQI 108 >gi|37542893|gb|AAL61528.1| major basic nuclear protein [Karlodinium micrum] Length = 108 Score = 41.8 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDMLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPAT 73 Query: 63 VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 RN ++VK+ R +V ++ LKK+I Sbjct: 74 KAGVRN-VFGKDVKVKAKPARTIVKGYCAAALKKQI 108 >gi|325281906|ref|YP_004254448.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324313715|gb|ADY34268.1| histone family protein DNA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 119 Score = 41.8 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +T + +VK I K +S D + L E+ ++ G +++ +FH+ K Sbjct: 13 VTLAQIVKRIEKRSTVSSADVKAVLDALQYEVIEALENGNTVRLGDIGSFHLTIKAE 69 >gi|298386519|ref|ZP_06996075.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298260896|gb|EFI03764.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 205 Score = 41.8 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 + D ++ +S+ + + +E+ ++ G +++ F + K + Sbjct: 34 KKDFIERVSRHQPFPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM- 92 Query: 67 LQTNQEVKIDPRR--VVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 T +E++ + R V + S KK+I ++ + V + Sbjct: 93 --TKKEIRAESIRFDNVHLRTSKEFKKKIKREIELERVENSKVKT 135 >gi|94314477|ref|YP_587686.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34] gi|93358329|gb|ABF12417.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34] Length = 140 Score = 41.8 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T +S L+ + + L +K + L N I + + A + + F V Sbjct: 42 TFNKSSLLAHLVAQTELDKKTVQTVLVHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVPA 101 Query: 59 KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G+N T Q+ V + LK Sbjct: 102 TKKRFGKNPFTGQDQWFAAKPASVKVKVRPLKKLKDA 138 >gi|160882963|ref|ZP_02063966.1| hypothetical protein BACOVA_00925 [Bacteroides ovatus ATCC 8483] gi|293370900|ref|ZP_06617444.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|156111646|gb|EDO13391.1| hypothetical protein BACOVA_00925 [Bacteroides ovatus ATCC 8483] gi|292634009|gb|EFF52554.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 207 Score = 41.8 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++K G + L +++ G +++ F F K K SR+ N + Sbjct: 37 LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 + + V F+AS ++ I D+ RKC Sbjct: 96 DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128 >gi|329963272|ref|ZP_08300985.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328528811|gb|EGF55755.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 160 Score = 41.8 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 8/72 (11%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 + IS+ L++ D+ + L + E++ + TF + K T Sbjct: 37 AQEISEYSSLTKGDTKNTLDNLVRVMTTHLHASESVTLDGLGTFRLVMKS--------TG 88 Query: 71 QEVKIDPRRVVV 82 + V+ + Sbjct: 89 KGVESAAKVSPA 100 >gi|260172609|ref|ZP_05759021.1| hypothetical protein BacD2_12151 [Bacteroides sp. D2] gi|315920899|ref|ZP_07917139.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694774|gb|EFS31609.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 207 Score = 41.8 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++K G + L +++ G +++ F F K K SR+ N + Sbjct: 37 LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 + + V F+AS ++ I D+ RKC Sbjct: 96 DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128 >gi|299146941|ref|ZP_07040008.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|298514826|gb|EFI38708.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 207 Score = 41.8 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++K G + L +++ G +++ F F K K SR+ N + Sbjct: 37 LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 + + V F+AS ++ I D+ RKC Sbjct: 96 DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128 >gi|160890372|ref|ZP_02071375.1| hypothetical protein BACUNI_02813 [Bacteroides uniformis ATCC 8492] gi|270296931|ref|ZP_06203130.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156860104|gb|EDO53535.1| hypothetical protein BACUNI_02813 [Bacteroides uniformis ATCC 8492] gi|270272918|gb|EFA18781.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 169 Score = 41.8 bits (98), Expect = 0.032, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 16/108 (14%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62 D+ + ++ L+ D +T + + G+++ I +F F + + + Sbjct: 37 DIAYVMKEKSSLTLGDIQSVLTNFVEAMITTLYSGQSVNIKNFGVFSLSARTAGVLDVKE 96 Query: 63 -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 +N++ VKI F+ SS ++ I G+K + D+ + Sbjct: 97 CTAKNIK---AVKI------NFRPSSTVRPDIAATRAGQKIDFYDLEA 135 >gi|257468467|ref|ZP_05632561.1| hypothetical protein FulcA4_03939 [Fusobacterium ulcerans ATCC 49185] Length = 45 Score = 41.8 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 23/44 (52%) Query: 47 KISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILK 90 K TF + K RV N T + + I P++++ F+AS +K Sbjct: 2 KFPKIGTFEILSKQPRVISNPVTRELMTIYPKKIIKFRASKKIK 45 >gi|319902288|ref|YP_004162016.1| DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319417319|gb|ADV44430.1| DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 161 Score = 41.8 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 16/106 (15%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62 D+ + ++ L+ D +T + + G+++ I +F F + + + Sbjct: 37 DIAYMMKEKSSLTLGDIQSVLTNFVEAMLATLYNGQSVNIKNFGVFSLSARTAGVTELKE 96 Query: 63 -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDV 107 +N++ VKI F+ SS ++ I G+K + D+ Sbjct: 97 CTAKNIK---AVKI------NFRPSSTVRPDITATRAGQKIDFYDL 133 >gi|237720567|ref|ZP_04551048.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450318|gb|EEO56109.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 207 Score = 41.8 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++K G + L +++ G +++ F F K K SR+ N Sbjct: 37 LIRGVAKRTGFKEGVIEGILMELKDDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN--- 93 Query: 70 NQEVKIDPRRVVV----FKASSILKKRIMDDMRGRKC 102 + I VV F+AS ++ I D+ RKC Sbjct: 94 --KNDIRSESVVFNGVNFRASKSMRVGIRGDLERRKC 128 >gi|225388722|ref|ZP_03758446.1| hypothetical protein CLOSTASPAR_02458 [Clostridium asparagiforme DSM 15981] gi|225045234|gb|EEG55480.1| hypothetical protein CLOSTASPAR_02458 [Clostridium asparagiforme DSM 15981] Length = 116 Score = 41.8 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK-ISSFATF--HVKQKGS 61 + + +++ I+ G S +++ +F L + ++ E+I + + +F ++ Sbjct: 1 MDKDRMLREIAVRSGYSEEETRQFYAALVDVFTEALGNRESIDCLPEWGSFIPKLRDNMG 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCN 103 R + + ++ P + F+ S +++++ D++ + Sbjct: 61 RQENSPRAEKK----PHYYIRFRPSKEFERKLLLDIKTDETG 98 >gi|239927993|ref|ZP_04684946.1| hypothetical protein SghaA1_07201 [Streptomyces ghanaensis ATCC 14672] Length = 85 Score = 41.8 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 31/98 (31%) Query: 5 ITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNE------ICDSAVRGEAIKISSFAT 53 + ++ L+++ + L+ + + LF I ++ RGE + + SF + Sbjct: 1 MDKTQLIEATTGRAADDGDQLTTESVGHTLDALFGTVEHPGSIAEALGRGETVHLGSFGS 60 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 FH+ F+ L + Sbjct: 61 FHL--------------------EGGTAAFRPGKALTE 78 >gi|329965438|ref|ZP_08302362.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328522230|gb|EGF49344.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 162 Score = 41.8 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 16/108 (14%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR------ 62 D+ + ++ L+ D +T + + G+++ I +F F + + + Sbjct: 37 DIAYVMKEKSSLTLGDIQSVLTNFVEAMVATLYNGQSVNIKNFGVFSLSARTAGVTELKE 96 Query: 63 -VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 +N++ VKI F+ SS ++ I G+K + D+ + Sbjct: 97 CTAKNIK---AVKI------NFRPSSTVRPDITATRVGQKIDFYDLEA 135 >gi|313203263|ref|YP_004041920.1| hypothetical protein Palpr_0781 [Paludibacter propionicigenes WB4] gi|312442579|gb|ADQ78935.1| hypothetical protein Palpr_0781 [Paludibacter propionicigenes WB4] Length = 132 Score = 41.8 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 L + ++ LS + + I D + + + F TF +K Sbjct: 39 LAEKAARRCNLSNFEIEMAIKVALEAIQDELLDSNNVCLEGFGTFSLK 86 >gi|188591441|ref|YP_001796040.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis] gi|170938836|emb|CAP63835.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis LMG 19424] Length = 143 Score = 41.8 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T +S L+ + + L +K + L N + + + A + + F V Sbjct: 45 TFNKSSLLAHLVAQTELDKKTVQTVLAHLENTVLSAVHKKGAGEFTLPGLFKVSAIQVPA 104 Query: 59 KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G+N T QE V + LK Sbjct: 105 TKKRFGKNPFTGQEQWFAAKPASVKVKVRPLKKLKDA 141 >gi|194334663|ref|YP_002016523.1| hypothetical protein Paes_1864 [Prosthecochloris aestuarii DSM 271] gi|194312481|gb|ACF46876.1| hypothetical protein Paes_1864 [Prosthecochloris aestuarii DSM 271] Length = 160 Score = 41.8 bits (98), Expect = 0.035, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 7 RSDL-VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 ++DL + +++ GL R++ + + + + +I + F V+ Sbjct: 2 KNDLCISRLAETLGLDHATVRRYLELFVSGLGEELLERRSICLKGLGLFEVRH 54 >gi|218129040|ref|ZP_03457844.1| hypothetical protein BACEGG_00613 [Bacteroides eggerthii DSM 20697] gi|317477497|ref|ZP_07936723.1| hypothetical protein HMPREF1016_03708 [Bacteroides eggerthii 1_2_48FAA] gi|217988816|gb|EEC55134.1| hypothetical protein BACEGG_00613 [Bacteroides eggerthii DSM 20697] gi|316906361|gb|EFV28089.1| hypothetical protein HMPREF1016_03708 [Bacteroides eggerthii 1_2_48FAA] Length = 164 Score = 41.4 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 20/44 (45%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 L +I K +++ D + L EI + G+ +K++ T Sbjct: 40 LAANIQKNCAMTKGDVKHVIEALVEEIQTNLANGDKVKLNLLGT 83 >gi|150007931|ref|YP_001302674.1| hypothetical protein BDI_1292 [Parabacteroides distasonis ATCC 8503] gi|149936355|gb|ABR43052.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 146 Score = 41.4 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 25/124 (20%) Query: 4 TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +S +L I+ SR D V L + +GE +++ F Sbjct: 26 AVNKSTGTCDFEELCDQIADRSTASRGDVHVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84 Query: 57 KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 + +G +++ I R+V F+ S LK + ++ K D + Sbjct: 85 ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTSLVKFEKI-VPDAPA 134 Query: 110 PSGS 113 P GS Sbjct: 135 PGGS 138 >gi|319760136|ref|YP_004124075.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] gi|317119742|gb|ADV02230.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans BC] Length = 123 Score = 41.4 bits (97), Expect = 0.037, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 8/96 (8%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ---K 59 +T++ L +++ G+ K + L + S +G +A + V++ K Sbjct: 26 LTKTSLTALLAERTGVDAKSVKAVLAALEGAMLGSVNKKGAQAFTLPGLLKIEVQKIPAK 85 Query: 60 GSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G N T +E + +A LK Sbjct: 86 PKRKGINPFTKEEQVFAAKPASVRIKARALKKLKDA 121 >gi|189468511|ref|ZP_03017296.1| hypothetical protein BACINT_04914 [Bacteroides intestinalis DSM 17393] gi|189436775|gb|EDV05760.1| hypothetical protein BACINT_04914 [Bacteroides intestinalis DSM 17393] Length = 204 Score = 41.4 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 9/113 (7%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT + + + KE + + + N + D G +++ F K +R Sbjct: 31 TITAKEFQERMVKEQHMPHAMIVGIMQAISNALGDWLADGYNVELDELGYFSTTLKCTRT 90 Query: 64 GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 N + I V V F+ S KK + M + +K T Sbjct: 91 AMNKK-----DIRAESVRFETVKFRPSKTFKKYVRYQMHLERLDKKMTTKKPA 138 >gi|326319191|ref|YP_004236863.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376027|gb|ADX48296.1| histone family protein DNA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 156 Score = 41.4 bits (97), Expect = 0.038, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58 T T++ L+ ++++ G+ K + + L I S +G + V Sbjct: 58 TFTKTSLIAHLAEQAGVEPKAAKAVMAALEATILGSVHKKGSGEFTLPGLMKIGLQQVPA 117 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E + +A LK Sbjct: 118 KKKRFGKDPFTGEERWFPAKPASVKIKTRALKKLKDA 154 >gi|298376724|ref|ZP_06986679.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|298266602|gb|EFI08260.1| DNA-binding protein [Bacteroides sp. 3_1_19] Length = 146 Score = 41.4 bits (97), Expect = 0.039, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 24/123 (19%) Query: 4 TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +S +L I+ SR D V L + +GE +++ F Sbjct: 26 AVNKSTGTCDFEELCDQIADRSTASRGDVQVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84 Query: 57 KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 + +G +++ I R+V F+ S LK + + K D Sbjct: 85 ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTGLAKFEKIMPDAPAP 135 Query: 110 PSG 112 G Sbjct: 136 GGG 138 >gi|291436325|ref|ZP_06575715.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291339220|gb|EFE66176.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 111 Score = 41.4 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 31/98 (31%) Query: 5 ITRSDLVKSISKEF-----GLSRKDSTRFVTTLFNE------ICDSAVRGEAIKISSFAT 53 + ++ L+++ + L+ + + LF I ++ RGE + + SF + Sbjct: 27 MDKTQLIEATTGRAADDGDQLTTESVGHTLDALFGTVEHPGSIAEALGRGETVHLGSFGS 86 Query: 54 FHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 FH+ F+ L + Sbjct: 87 FHL--------------------EGGTAAFRPGKALTE 104 >gi|281420313|ref|ZP_06251312.1| putative DNA-binding protein [Prevotella copri DSM 18205] gi|281405615|gb|EFB36295.1| putative DNA-binding protein [Prevotella copri DSM 18205] Length = 212 Score = 41.4 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 11/104 (10%) Query: 2 SKTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--- 57 ++T++R + VK + G+S + +T + + + D G + + F TF + Sbjct: 27 NRTLSRKEFVKMMQNYHRGISESTTEAVLTDVVDMLTDMLSMGYNVNLEGFGTFSLSLAF 86 Query: 58 -QKGSRVGRNL---QTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 + R N T ++V + + + FKAS K + + Sbjct: 87 EDEKPREILNPDDKMTYRKVGV---KDINFKASPEFIKEVKRET 127 >gi|218131335|ref|ZP_03460139.1| hypothetical protein BACEGG_02946 [Bacteroides eggerthii DSM 20697] gi|317476364|ref|ZP_07935613.1| hypothetical protein HMPREF1016_02596 [Bacteroides eggerthii 1_2_48FAA] gi|217986267|gb|EEC52604.1| hypothetical protein BACEGG_02946 [Bacteroides eggerthii DSM 20697] gi|316907390|gb|EFV29095.1| hypothetical protein HMPREF1016_02596 [Bacteroides eggerthii 1_2_48FAA] Length = 161 Score = 41.4 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%) Query: 11 VKSIS----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + I+ + LS+ D + + + G ++ I F F + + Sbjct: 35 IDKIAYQMKENSSLSKGDILSVIANFVECMRKNLYNGHSVNIRDFGVFSLSARTE 89 >gi|301310028|ref|ZP_07215967.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|300831602|gb|EFK62233.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 146 Score = 41.4 bits (97), Expect = 0.041, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 24/123 (19%) Query: 4 TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +S +L I+ SR D V L + +GE +++ F Sbjct: 26 AVNKSTGTCDFEELCDQIADRSTASRGDVQVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84 Query: 57 KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 + +G +++ I R+V F+ S LK + + K D Sbjct: 85 ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTGLAKFEKIVPDAPAP 135 Query: 110 PSG 112 G Sbjct: 136 GGG 138 >gi|295086081|emb|CBK67604.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A] Length = 207 Score = 41.4 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++K G + L ++ G +++ F F K K SR+ N + Sbjct: 37 LIRGVAKRTGFKEGVIEGILIELKEDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 + + V F+AS ++ I D+ RKC Sbjct: 96 DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128 >gi|298481205|ref|ZP_06999399.1| non-specific DNA binding protein [Bacteroides sp. D22] gi|298272779|gb|EFI14346.1| non-specific DNA binding protein [Bacteroides sp. D22] Length = 176 Score = 41.4 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++ + + + LS D + ++ + + G+++ I F + + Sbjct: 30 LGQSVNLKYIAQKMQDRSSLSVGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89 Query: 61 SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90 E+ I+ + V + F+A+ L+ Sbjct: 90 K--------GAELAKDINAKSVESVRIFFQANKELR 117 >gi|237714678|ref|ZP_04545159.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406545|ref|ZP_06083094.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645695|ref|ZP_06723382.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806963|ref|ZP_06765786.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229445447|gb|EEO51238.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355248|gb|EEZ04339.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638974|gb|EFF57305.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294445850|gb|EFG14494.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295084073|emb|CBK65596.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 176 Score = 41.4 bits (97), Expect = 0.044, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++ + + + LS D + ++ + + G+++ I F + + Sbjct: 30 LGQSVNLKYIAQKMQDRSSLSVGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89 Query: 61 SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90 E+ I+ + V + F+A+ L+ Sbjct: 90 K--------GAELAKDINAKSVESVRIFFQANKELR 117 >gi|160884492|ref|ZP_02065495.1| hypothetical protein BACOVA_02476 [Bacteroides ovatus ATCC 8483] gi|260174700|ref|ZP_05761112.1| hypothetical protein BacD2_22789 [Bacteroides sp. D2] gi|293369787|ref|ZP_06616363.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|299145959|ref|ZP_07039027.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23] gi|315922960|ref|ZP_07919200.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110231|gb|EDO11976.1| hypothetical protein BACOVA_02476 [Bacteroides ovatus ATCC 8483] gi|292635209|gb|EFF53725.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298516450|gb|EFI40331.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23] gi|313696835|gb|EFS33670.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 174 Score = 41.4 bits (97), Expect = 0.045, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++ + + + LS D + ++ + + G+++ I F + + Sbjct: 30 LGQSVNLKYIAQKMQDRSSLSIGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89 Query: 61 SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90 E+ I+ + V + F+A+ L+ Sbjct: 90 K--------GAELAKDINAKSVDSVRIFFQANKELR 117 >gi|254461449|ref|ZP_05074865.1| DNA-binding protein HU, putative [Rhodobacterales bacterium HTCC2083] gi|206678038|gb|EDZ42525.1| DNA-binding protein HU, putative [Rhodobacteraceae bacterium HTCC2083] Length = 101 Score = 41.4 bits (97), Expect = 0.046, Method: Composition-based stats. Identities = 5/51 (9%), Positives = 22/51 (43%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 + + +L++ +++ G+ +KD+ + + + + G + + Sbjct: 13 PALKKKELIEIVTERSGIKKKDAKPVIEAMLAVLGQTLAEGREMNLQPLGK 63 >gi|153806423|ref|ZP_01959091.1| hypothetical protein BACCAC_00687 [Bacteroides caccae ATCC 43185] gi|149131100|gb|EDM22306.1| hypothetical protein BACCAC_00687 [Bacteroides caccae ATCC 43185] Length = 170 Score = 41.0 bits (96), Expect = 0.048, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 14/87 (16%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + + LS D + +++ + + G+++ I F + + Sbjct: 39 LAEKMRDRSSLSVGDIKSVIQNFVDKMKEQLLEGKSVNIEGLGVFMLAARSK-------- 90 Query: 70 NQEV--KIDPRRV----VVFKASSILK 90 ++ I + V + F+A+ L+ Sbjct: 91 GADLAKDITAKSVESVRIFFQANKELR 117 >gi|298483834|ref|ZP_07002006.1| DNA-binding protein [Bacteroides sp. D22] gi|298270021|gb|EFI11610.1| DNA-binding protein [Bacteroides sp. D22] Length = 207 Score = 41.0 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L++ ++K G + L ++ G +++ F F K K SR+ N + Sbjct: 37 LIRGVAKRTGFKEGVIEGILIELKEDVLQYLGEGYRVELGEFGFFSAKVKASRLVAN-KN 95 Query: 70 NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 + + V F+AS ++ I D+ RKC Sbjct: 96 DIRSESVAFNGVNFRASKSMRVGIRGDLERRKC 128 >gi|120613143|ref|YP_972821.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] gi|120591607|gb|ABM35047.1| histone family protein DNA-binding protein [Acidovorax citrulli AAC00-1] Length = 155 Score = 41.0 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58 T T++ L+ ++++ G+ K + + L I S +G + V Sbjct: 57 TFTKTSLIAHLAEQAGVEPKAAKAVMAALEAAILGSVHKKGSGEFTLPGLMKIGLQQVPA 116 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E + +A LK Sbjct: 117 KKKRFGKDPFTGEERWFPAKPASVKIKTRALKKLKDA 153 >gi|149203598|ref|ZP_01880567.1| hypothetical protein RTM1035_06018 [Roseovarius sp. TM1035] gi|149142715|gb|EDM30757.1| hypothetical protein RTM1035_06018 [Roseovarius sp. TM1035] Length = 175 Score = 41.0 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 5/52 (9%), Positives = 20/52 (38%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + +L+ + + + +K++ V + + + G I + + + Sbjct: 79 KQELIDKVLAKGDIKKKNAKPVVEAVLEVLGEVLAEGREINLPPLGKIKINR 130 >gi|207722729|ref|YP_002253164.1| histone-like dna-binding protein dna-binding plasmid [Ralstonia solanacearum MolK2] gi|206587911|emb|CAQ18492.1| probable histone-like dna-binding protein dna-binding plasmid [Ralstonia solanacearum MolK2] Length = 135 Score = 41.0 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 10/98 (10%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ----- 58 T T++ LV + ++ + K + L N I + + A + + F V Sbjct: 37 TFTKASLVSHLVEQTEVDAKSVKAVLQHLENTILGALHKKGAGEFTLPGLFKVVSVKVPA 96 Query: 59 KGSRVGRNLQTNQ----EVKIDPRRVVVFKASSILKKR 92 R G+N T + E K V + +K Sbjct: 97 TKRRFGKNPFTGEDQWFEAK-PATVRVKVRPLKKVKDA 133 >gi|157093123|gb|ABV22216.1| major basic nuclear protein [Karlodinium micrum] Length = 104 Score = 41.0 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 10 KAMTKGALAKALATEHGLKQKACSDVLNSLASIATAEVKKTGIFSIPGLCRIKTRTKPAT 69 Query: 63 VG--RNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 RN +EVK+ + +V ++ LKK+I Sbjct: 70 KAGVRN-VFGKEVKVKAKPAKTIVKGYCAAALKKQI 104 >gi|29347400|ref|NP_810903.1| hypothetical protein BT_1990 [Bacteroides thetaiotaomicron VPI-5482] gi|253570563|ref|ZP_04847971.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29339300|gb|AAO77097.1| Histone-like bacterial DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251839512|gb|EES67595.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 161 Score = 41.0 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 25/119 (21%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++ + I + ++ D + L E+ DS +GE +++ + +F+V + Sbjct: 38 EMAERIQRSSTVNWADVVCVLRALQTEMIDSFKKGEIVRLGNIGSFYVTLRS-------- 89 Query: 69 TNQEVK-------IDPRRVVVFKASSILKKRIM---------DDMRGRKCNKDDVTSPS 111 V+ I RV F+ +K + ++ G K + ++ Sbjct: 90 NGVLVQKDVKEGLIKGARV-RFRPGKEIKDALKTLDFSKYKPENSEGDKTDPENPKPKP 147 >gi|21243654|ref|NP_643236.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109232|gb|AAM37772.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306] Length = 141 Score = 41.0 bits (96), Expect = 0.051, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55 + ++++ LV I++ L+ KD + +L S + TF Sbjct: 42 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95 Query: 56 ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92 V K R G N T +E +I + + LK Sbjct: 96 TTVHVPAKPKRKGINPFTKEE-QIFAAKPATTKLKSRMMKRLKDA 139 >gi|237718647|ref|ZP_04549128.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452107|gb|EEO57898.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 174 Score = 41.0 bits (96), Expect = 0.052, Method: Composition-based stats. Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++ + + + LS D + ++ + + G+++ I F + + Sbjct: 30 LGQSVNLKYIAQKMQDRSSLSVGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVFMLTARS 89 Query: 61 SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90 E+ I+ + V + F+A+ L+ Sbjct: 90 K--------GAELAKDINAKSVDSVRIFFQANKELR 117 >gi|307566376|ref|ZP_07628815.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A] gi|307344953|gb|EFN90351.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A] Length = 142 Score = 41.0 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL +I + +R D V L +EI G+ + + FH+ Sbjct: 35 DLSNAIQESTSFTRGDVRGIVVALIDEIGFQLANGKTVVLEGLGRFHL 82 >gi|260885973|ref|ZP_05736255.2| putative DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260851120|gb|EEX70989.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 144 Score = 41.0 bits (96), Expect = 0.053, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 10/85 (11%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L I LSR D + + +E+ G + + +F +K + Sbjct: 37 LATDIESRTTLSRADVKGLLDAVEHELIAQLAAGNRVALGDLGSFKLKIRSRGE------ 90 Query: 70 NQEVKIDPRRV----VVFKASSILK 90 ++ K P+ + V+F+ S+ L+ Sbjct: 91 KEKKKFTPKNILGTRVLFRCSTKLR 115 >gi|160883448|ref|ZP_02064451.1| hypothetical protein BACOVA_01417 [Bacteroides ovatus ATCC 8483] gi|237720227|ref|ZP_04550708.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293371153|ref|ZP_06617690.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|299148079|ref|ZP_07041142.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23] gi|156111168|gb|EDO12913.1| hypothetical protein BACOVA_01417 [Bacteroides ovatus ATCC 8483] gi|229450779|gb|EEO56570.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292633811|gb|EFF52363.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298514262|gb|EFI38148.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23] Length = 170 Score = 41.0 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 25/63 (39%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + + + I+++ L+ D + L + + + + +++ TF + K Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAG 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|329964795|ref|ZP_08301818.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328524646|gb|EGF51709.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 212 Score = 41.0 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRV 63 + +S +R D V + EI S G ++KI F +++ R Sbjct: 35 IADKVSYATSFTRGDIKGLVQAITEEIAHSMSEGYSVKIEGLGVFTPSLGLRKDKERE 92 >gi|319901101|ref|YP_004160829.1| DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319416132|gb|ADV43243.1| DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 175 Score = 41.0 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L + ++ G+S D + L I ++ GE++ + +FHV Sbjct: 40 LAQRMAFRKGMSAGDVEGVLVDLPRFIEEALRSGESVTVRGLGSFHV 86 >gi|258648346|ref|ZP_05735815.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260851511|gb|EEX71380.1| putative DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 207 Score = 41.0 bits (96), Expect = 0.055, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 20/114 (17%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS-------- 61 L + IS S D + L + G + + F + KG Sbjct: 35 LAQKISVGTTFSSADLIGALDALKEAMIAELKEGGRVHLPGLGYFSLSIKGEVYQDAKTQ 94 Query: 62 --RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 R+ R+ + I R + F L KR+ D + + P Sbjct: 95 RYRL-RSPR------I---RKIKFLPERTLMKRLADTHFANVGSTSSTSKPLNE 138 >gi|289678204|ref|ZP_06499094.1| HU family DNA-binding protein [Pseudomonas syringae pv. syringae FF5] Length = 51 Score = 41.0 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 7/50 (14%), Positives = 17/50 (34%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 +T+ L+ I++ + + + L + D G I + Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGK 51 >gi|218260516|ref|ZP_03475786.1| hypothetical protein PRABACTJOHN_01449 [Parabacteroides johnsonii DSM 18315] gi|218224501|gb|EEC97151.1| hypothetical protein PRABACTJOHN_01449 [Parabacteroides johnsonii DSM 18315] Length = 194 Score = 41.0 bits (96), Expect = 0.056, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Query: 6 TRS--DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ ++ I++ ++ D + L + G +++ F K + Sbjct: 23 TKKMDEICSFINECCSVNSADIKGVLDALSKYVGRELSYGSCVELDGLGFFSPALKTFKD 82 Query: 64 GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGR 100 G N + +E+ +V V F+ + LKK++ + + Sbjct: 83 GVNEK-GEEIY----KVRVDGVNFRCAKKLKKQVRESQPQK 118 >gi|116695192|ref|YP_840768.1| DNA-binding protein, histone-like [Ralstonia eutropha H16] gi|113529691|emb|CAJ96038.1| Bacterial DNA-binding protein, histone-like [Ralstonia eutropha H16] Length = 152 Score = 41.0 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58 T +S LV + + L K + L I + +G + V Sbjct: 54 TFNKSSLVAHLVAQTQLEAKAVKTVLAHLETTIIGALNKKGAGEFTLPGLLKVTAQQVPA 113 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 114 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 150 >gi|237719825|ref|ZP_04550306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451094|gb|EEO56885.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 95 Score = 41.0 bits (96), Expect = 0.059, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 19/50 (38%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + +V I+ L+ D + L I + G +++ +F Sbjct: 32 MKQKQIVDQIADRCTLTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSF 81 >gi|302347061|ref|YP_003815359.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845] gi|302151018|gb|ADK97279.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845] Length = 167 Score = 41.0 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL IS+ ++ D ++ L E+ G +K+ TF V Sbjct: 28 KDLALRISERCTVTEPDILAVISALVFEMNQVLKDGNRVKLDGLGTFRV 76 >gi|186473326|ref|YP_001860668.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] gi|184195658|gb|ACC73622.1| histone family protein DNA-binding protein [Burkholderia phymatum STM815] Length = 150 Score = 41.0 bits (96), Expect = 0.061, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58 T T++ L +++ G+ K + + L + I S +G +S V+ Sbjct: 51 TFTKASLAAHVAERAGVEPKSAKAVLAALEDTILGSVHKKGAGEFTLSGLLKIVVQAVPA 110 Query: 59 KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 K R G++ T QE + + +A LK Sbjct: 111 KKKRFGKDPFTGQERWFPAKPASVRIKARALKKLKDA 147 >gi|167762549|ref|ZP_02434676.1| hypothetical protein BACSTE_00905 [Bacteroides stercoris ATCC 43183] gi|167699655|gb|EDS16234.1| hypothetical protein BACSTE_00905 [Bacteroides stercoris ATCC 43183] Length = 204 Score = 40.7 bits (95), Expect = 0.062, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 17/113 (15%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF----HVKQK 59 TI R + + + G+SR + +E+ D G +++ F +++ Sbjct: 31 TIDRKEFIDRVHLFTGISRSVLEGAMAAFMDELRDCLANGWTVELGELGYFTPSLSCRRR 90 Query: 60 GSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVT 108 ++ ++ V + F+ + + MR + + V Sbjct: 91 AM---------EKDEVRAASVALRGLNFRLGKKFHEDLSGKMRLERRPQPAVP 134 >gi|224537892|ref|ZP_03678431.1| hypothetical protein BACCELL_02779 [Bacteroides cellulosilyticus DSM 14838] gi|224520488|gb|EEF89593.1| hypothetical protein BACCELL_02779 [Bacteroides cellulosilyticus DSM 14838] Length = 215 Score = 40.7 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++ + I K L+ D + + L + + + G + + F+ K G + Sbjct: 39 EIRRKIQKRSSLTETDVSAVLDALSHVMGEELSEGRQVHLDGIGYFYPTLKSE-KGITRE 97 Query: 69 T---NQEVKIDPRRVVVFKASSILKKRI 93 T N++V++ + + F+A LK + Sbjct: 98 TDRKNEKVRL---KGIKFRADRALKDEV 122 >gi|328947219|ref|YP_004364556.1| hypothetical protein Tresu_0300 [Treponema succinifaciens DSM 2489] gi|328447543|gb|AEB13259.1| hypothetical protein Tresu_0300 [Treponema succinifaciens DSM 2489] Length = 255 Score = 40.7 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 10 LVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 L+ K+ G++ + ++ + EI ++ RGE++ + TF++ + G + Sbjct: 45 LIARTQKKDIGVNAITAKHILSLIKAEIIEALQRGESVNLMDLGTFYI----AASGTSGN 100 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 T + +I + +V F +S + + Sbjct: 101 TAETAEIK-KLLVKFTSSKETNEAVSK 126 >gi|289664570|ref|ZP_06486151.1| bacterial DNA-binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 141 Score = 40.7 bits (95), Expect = 0.066, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55 + ++++ LV I++ L+ KD + +L S + TF Sbjct: 42 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95 Query: 56 ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92 V K R G N T +E +I + + LK Sbjct: 96 TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKLKSRVMKRLKDA 139 >gi|329955615|ref|ZP_08296523.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328526018|gb|EGF53042.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 204 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 9/115 (7%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TI + + + + G+SR + +E+ D G +++ F R Sbjct: 31 TIDKKEFIDRVHLFTGISRSVLEGTMAAFMDELRDCLANGWTVELGELGYFTPSLSCQRR 90 Query: 64 GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 ++ K+ V + F+ + + M+ + + V++ S ++ Sbjct: 91 AM-----EKDKVRAASVALRGLNFRLGKRFYEELGSKMKLERKPRPVVSASSDTF 140 >gi|153807005|ref|ZP_01959673.1| hypothetical protein BACCAC_01282 [Bacteroides caccae ATCC 43185] gi|149130125|gb|EDM21335.1| hypothetical protein BACCAC_01282 [Bacteroides caccae ATCC 43185] Length = 207 Score = 40.7 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + I L+ D + +L + + + GE++ + F +K + + Sbjct: 37 LARQIQTATSLTEGDVKSVLESLSHFMGERLREGESVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA LKK + Sbjct: 97 KAN-QIKLKANISFKADIKLKKSV 119 >gi|73537884|ref|YP_298251.1| histone-like DNA-binding protein [Ralstonia eutropha JMP134] gi|72121221|gb|AAZ63407.1| Histone-like bacterial DNA-binding protein [Ralstonia eutropha JMP134] Length = 154 Score = 40.7 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQ 58 T +S LV + + + K + L N I + +G + V Sbjct: 55 TFNKSSLVAHLVAQTQMEPKAVKTVLAHLENTIVGALNKKGAGEFTLPGLLKVTAQQVPA 114 Query: 59 KGSRVGRNLQTNQEV---KIDPRRVVVFKASSILKKR 92 K R G++ T +E V + LK Sbjct: 115 KKKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 151 >gi|298385143|ref|ZP_06994702.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|298262287|gb|EFI05152.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 161 Score = 40.7 bits (95), Expect = 0.068, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 19/112 (16%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++ + I + ++ D + L E+ DS +GE +++ + +F+V + Sbjct: 38 EMAERIQRSSTVNWADVVCVLRALQTEMIDSFKKGEIVRLGNIGSFYVTLRS-------- 89 Query: 69 TNQEVK-------IDPRRVVVFKASSILKKRIMD---DMRGRKCNKDDVTSP 110 V+ I RV F+ +K + + ++ D T P Sbjct: 90 NGVLVQKDVKEGLIKGARV-RFRPGKEIKDALKTLDFSKYKPESSEGDKTDP 140 >gi|319943530|ref|ZP_08017812.1| DNA-binding protein BpH2 [Lautropia mirabilis ATCC 51599] gi|319743345|gb|EFV95750.1| DNA-binding protein BpH2 [Lautropia mirabilis ATCC 51599] Length = 102 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 8/100 (8%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE--AIKISSF---ATFH 55 M +T T++ L + ++++ G+ K + L I S + + Sbjct: 1 MKETFTKAGLAQHLAEQTGVETKAVKAVMAALELTILASVHKKGAREFTLPGLLKIGVID 60 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 V K R G + T QE + + + +A +K Sbjct: 61 VPAKKKRRGIDPFTGQEREFAAKPATVRIKVRALKKIKDA 100 >gi|295086370|emb|CBK67893.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 156 Score = 40.7 bits (95), Expect = 0.070, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 18/47 (38%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V+ I+ L+ D + L I + G +++ +F Sbjct: 35 KQIVEQIADRCTLTGSDIKAVLDALMTVIKRNLANGSPVRLGDLGSF 81 >gi|256840904|ref|ZP_05546412.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738176|gb|EEU51502.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 146 Score = 40.7 bits (95), Expect = 0.071, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 25/124 (20%) Query: 4 TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + +S +L I+ SR D V L + +GE +++ F Sbjct: 26 AVNKSTGTCDFEELCDQIADRSTASRGDVHVVVDGLLYILKQRLQKGETVQLGDLGHFQ- 84 Query: 57 KQKGSRVGRNLQTNQEVK-------IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 + +G +++ I R+V F+ S LK + + K D + Sbjct: 85 ----AVIG---SKGTKLESDFNASLIKRPRIV-FRPSVTLK-SVTGLAKFEKI-VPDAPA 134 Query: 110 PSGS 113 P GS Sbjct: 135 PGGS 138 >gi|260593025|ref|ZP_05858483.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] gi|260534997|gb|EEX17614.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] Length = 157 Score = 40.7 bits (95), Expect = 0.072, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 1 MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 M+ T ++ + +VK + K +S D + L E+ + G +++ +F + Sbjct: 24 MAPTTPMSLAQIVKRVEKRSTVSSADVKAVLDALQYEVMEVLENGNTVRLGDLGSFRLTM 83 Query: 59 KGS 61 K Sbjct: 84 KSQ 86 >gi|288801963|ref|ZP_06407404.1| DNA-binding protein [Prevotella melaninogenica D18] gi|288335398|gb|EFC73832.1| DNA-binding protein [Prevotella melaninogenica D18] Length = 173 Score = 40.7 bits (95), Expect = 0.073, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL IS+ ++ D ++ L E+ G +K+ TF V Sbjct: 34 KDLALRISERCTVTEPDILAVISALVFEMNQVLKDGNRVKLDGLGTFRV 82 >gi|295084561|emb|CBK66084.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 163 Score = 40.7 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62 L ++ ++ LS D +T L + + G+++ I F F V K Sbjct: 31 LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 90 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 +N++T V I F+ SS ++ + G K D+ +P Sbjct: 91 TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 129 >gi|237716130|ref|ZP_04546611.1| conserved hypothetical protein [Bacteroides sp. D1] gi|294646322|ref|ZP_06723971.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294807511|ref|ZP_06766309.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229443777|gb|EEO49568.1| conserved hypothetical protein [Bacteroides sp. D1] gi|292638334|gb|EFF56703.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294445301|gb|EFG13970.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 159 Score = 40.7 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62 L ++ ++ LS D +T L + + G+++ I F F V K Sbjct: 31 LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 90 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 +N++T V I F+ SS ++ + G K D+ +P Sbjct: 91 TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 129 >gi|289670424|ref|ZP_06491499.1| histone-like protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 141 Score = 40.7 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 18/105 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55 + ++++ LV I++ L+ KD + +L S + TF Sbjct: 42 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95 Query: 56 ----VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 V K R G N T +E +I + K L KR+ D Sbjct: 96 TTVHVPAKPKRKGINPFTKEE-QIFAAKSATTKVKPRLMKRLKDA 139 >gi|298483191|ref|ZP_07001371.1| DNA-binding protein [Bacteroides sp. D22] gi|298270708|gb|EFI12289.1| DNA-binding protein [Bacteroides sp. D22] Length = 216 Score = 40.7 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D T + L + + G + ++ F + T Sbjct: 43 RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLNGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V I +R F+A LK Sbjct: 92 EPVTISTKRKATKVKLKAIQFRADQTLK 119 >gi|255013382|ref|ZP_05285508.1| hypothetical protein B2_05700 [Bacteroides sp. 2_1_7] Length = 146 Score = 40.7 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 22/122 (18%) Query: 4 TITRS-------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH- 55 + +S +L I+ SR D V L + +GE +++ F Sbjct: 26 AVNKSTGTCDFEELCDQIADRSTASRGDVHVVVDGLLYILKQRLQKGETVQLGDLGHFQA 85 Query: 56 -VKQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 + KG T E + + +VF+ S LK + + K D Sbjct: 86 VIGSKG--------TKLEADFNASLIKRPRIVFRPSVTLK-SVTGLAKFEKIVPDAPAPG 136 Query: 111 SG 112 G Sbjct: 137 GG 138 >gi|160885061|ref|ZP_02066064.1| hypothetical protein BACOVA_03058 [Bacteroides ovatus ATCC 8483] gi|156109411|gb|EDO11156.1| hypothetical protein BACOVA_03058 [Bacteroides ovatus ATCC 8483] Length = 216 Score = 40.7 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D T + L + + G + ++ F + T Sbjct: 43 RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLNGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V I +R F+A LK Sbjct: 92 EPVTISTKRKATKVKLKAIQFRADQTLK 119 >gi|85057662|ref|YP_456578.1| hypothetical protein AYWB_382 [Aster yellows witches'-broom phytoplasma AYWB] gi|84789767|gb|ABC65499.1| conserved hypothetical protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 83 Score = 40.7 bits (95), Expect = 0.079, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS-FATFHVKQKGS 61 + + +L+KSI++ S + F + N + + E + +SS F +K + + Sbjct: 1 MNKKELIKSIAEVNKTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKA 58 >gi|294808482|ref|ZP_06767233.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|294444309|gb|EFG13025.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 170 Score = 40.7 bits (95), Expect = 0.080, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + + + I+++ L+ D + L + + + + +++ TF + K + Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|302345804|ref|YP_003814157.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845] gi|302149278|gb|ADK95540.1| putative DNA-binding protein [Prevotella melaninogenica ATCC 25845] Length = 148 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--QKGSRVGRN 66 D+ + I+ L+R D + + + + G +I++ SF + V KG+ Sbjct: 33 DIARDIAGRSSLTRGDVSNVLYNFIDCLPHYLRDGFSIQLGSFGSMRVTLASKGAETE-- 90 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRI 93 +T + I PR VVF + LK+ + Sbjct: 91 -KTFKTETIKPR--VVFTPGTELKREL 114 >gi|237714065|ref|ZP_04544546.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407116|ref|ZP_06083665.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229445889|gb|EEO51680.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355819|gb|EEZ04910.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 170 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + + + I+++ L+ D + L + + + + +++ TF + K + Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|257468327|ref|ZP_05632423.1| hypothetical protein FulcA4_03249 [Fusobacterium ulcerans ATCC 49185] Length = 93 Score = 40.3 bits (94), Expect = 0.081, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVV 82 K++ + +FN I + E +K + TF + ++ R + + + +I P++ + Sbjct: 24 KEAREEIEEIFNLIAEVIAMDEEVKFKNKGTFSLLKRKKRRIGSPTSKEVREIVPKKTIK 83 Query: 83 FKASSIL 89 F S IL Sbjct: 84 FVQSKIL 90 >gi|282879831|ref|ZP_06288559.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1] gi|281306296|gb|EFA98328.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1] Length = 154 Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 5 ITRSD-LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T +D L + I + + R D+ ++ L + D +K++ F F + + Sbjct: 30 MTEADVLAERIQRNCTVKRSDALAVLSELVEVMQDELQASHVVKLNGFGLFKIGMR 85 >gi|257469065|ref|ZP_05633159.1| hypothetical protein FulcA4_06955 [Fusobacterium ulcerans ATCC 49185] gi|317063311|ref|ZP_07927796.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688987|gb|EFS25822.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 40.3 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 SI K +S K++ + + I ++ +K + F ++ + + +N+ T ++ Sbjct: 14 SILKNQEVSLKEAEEDIEMMVESIAEAIAMENELKFKNKGKFILEDRKRKTVQNIHTGKK 73 Query: 73 VKIDPRRVVVFK 84 K+ P+++ FK Sbjct: 74 TKLPPKKI--FK 83 >gi|53714961|ref|YP_100953.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|253566064|ref|ZP_04843518.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265766813|ref|ZP_06094642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52217826|dbj|BAD50419.1| putative non-specific DNA binding protein [Bacteroides fragilis YCH46] gi|251945168|gb|EES85606.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253190|gb|EEZ24666.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301164399|emb|CBW23957.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 156 Score = 40.3 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 ++ LS D +T + S G+++ I F F + + G + E + Sbjct: 44 EKSSLSSGDIKSVLTNFVEAMRTSLYNGQSVNIRDFGVFSLSART--KGVD----TEKEC 97 Query: 76 DPRRVVV----FKASSILKKRIMDDMRGRKC 102 + ++ F+ SS ++ + G K Sbjct: 98 TAKNIMAVKINFRPSSSVRPNLTSTRAGDKI 128 >gi|224536207|ref|ZP_03676746.1| hypothetical protein BACCELL_01074 [Bacteroides cellulosilyticus DSM 14838] gi|224522175|gb|EEF91280.1| hypothetical protein BACCELL_01074 [Bacteroides cellulosilyticus DSM 14838] Length = 141 Score = 40.3 bits (94), Expect = 0.085, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 17/95 (17%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSRVGRN 66 I K +++ D + L E+ ++ G +K++ F+TF+ V +N Sbjct: 16 IQKSCAMTKGDVKHVIEALVEEVQENLANGNKVKLNQFSTFYMTFCCPGVATSAECTVKN 75 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 ++ V I F LK + + + Sbjct: 76 IK---RVNI------RFVPDKELK-LVNNSHAATR 100 >gi|298479626|ref|ZP_06997826.1| non-specific DNA binding protein [Bacteroides sp. D22] gi|298274016|gb|EFI15577.1| non-specific DNA binding protein [Bacteroides sp. D22] Length = 170 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 26/63 (41%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K + + + I+++ L+ D + L + + + + +++ TF + K + Sbjct: 29 GKMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKAN 88 Query: 62 RVG 64 G Sbjct: 89 GKG 91 >gi|332530366|ref|ZP_08406311.1| histone family protein DNA-binding protein [Hylemonella gracilis ATCC 19624] gi|332040177|gb|EGI76558.1| histone family protein DNA-binding protein [Hylemonella gracilis ATCC 19624] Length = 106 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58 T T+ L ++++ G+ K + L + + +G + V Sbjct: 8 TFTKGALASHLAEQAGVEPKAVKAVLAALEATMLGAINKKGAGEFTLPGLLKIGVQKVPA 67 Query: 59 KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + +A LK Sbjct: 68 KPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 104 >gi|293373582|ref|ZP_06619930.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|299148373|ref|ZP_07041435.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|292631407|gb|EFF50037.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298513134|gb|EFI37021.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 158 Score = 40.3 bits (94), Expect = 0.086, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 19/50 (38%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + +V I+ L+ D + L I + G +++ +F Sbjct: 32 MKQKQIVDQIADRCTLTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSF 81 >gi|262407742|ref|ZP_06084290.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|298480883|ref|ZP_06999078.1| non-specific DNA binding protein [Bacteroides sp. D22] gi|262354550|gb|EEZ03642.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|298272906|gb|EFI14472.1| non-specific DNA binding protein [Bacteroides sp. D22] Length = 166 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62 L ++ ++ LS D +T L + + G+++ I F F V K Sbjct: 38 LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 +N++T V I F+ SS ++ + G K D+ +P Sbjct: 98 TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 136 >gi|253569185|ref|ZP_04846595.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251841204|gb|EES69285.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 212 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I + L+ D + +L + + GE + + F VK + + Sbjct: 37 LAKEIQQATSLTEGDVKAVLESLSHFMGSRLREGERVHLDGIGYFQVKLNSLEPITSPKL 96 Query: 70 NQ-EVKIDPRRVVVFKASSILKKRI 93 ++K+ + FKA L+ + Sbjct: 97 KANQMKLKAN--IGFKADKKLRSSV 119 >gi|160882590|ref|ZP_02063593.1| hypothetical protein BACOVA_00543 [Bacteroides ovatus ATCC 8483] gi|156112034|gb|EDO13779.1| hypothetical protein BACOVA_00543 [Bacteroides ovatus ATCC 8483] Length = 171 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 16/108 (14%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSR 62 L ++ ++ LS D +T L + + G+++ I F F V K Sbjct: 38 LAYTMKEKSSLSLGDIQSVLTNLVEAMRTALFDGKSVNIHDFGVFSLSATTRGVDTKDEC 97 Query: 63 VGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 +N++T V I F+ SS ++ + G K D+ +P Sbjct: 98 TMKNIKT---VNI------NFRPSSSVRPNLTSTRAGEKIEFLDLDAP 136 >gi|94152492|ref|YP_581899.1| histone-like bacterial DNA-binding protein (Bph2) [Cupriavidus metallidurans CH34] gi|93358862|gb|ABF12949.1| Histone-like bacterial DNA-binding protein (Bph2) [Cupriavidus metallidurans CH34] gi|222870016|gb|EEF07147.1| predicted protein [Populus trichocarpa] Length = 147 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---- 58 +T +S L+ + + L +K + L N I + + A + + F V Sbjct: 48 ETFNKSSLLAHLIAQTELDKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVP 107 Query: 59 -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G+N T + V + LK Sbjct: 108 ATKKRFGKNPFTGVDQWFAAKPASVKVKVRPLKKLKDA 145 >gi|237716546|ref|ZP_04547027.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405324|ref|ZP_06081874.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644626|ref|ZP_06722379.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294810174|ref|ZP_06768842.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229442529|gb|EEO48320.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356199|gb|EEZ05289.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640063|gb|EFF58328.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294442638|gb|EFG11437.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 156 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 19/50 (38%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + +V I+ L+ D + L I + G +++ +F Sbjct: 32 MKQKQIVDQIADRCTLTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSF 81 >gi|60682933|ref|YP_213077.1| hypothetical protein BF3473 [Bacteroides fragilis NCTC 9343] gi|60494367|emb|CAH09163.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 156 Score = 40.3 bits (94), Expect = 0.089, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 ++ LS D +T + S G+++ I F F + + G + E + Sbjct: 44 EKSSLSLGDIKSVLTNFVEAMRTSLYNGQSVNIRDFGVFSLSART--KGVD----TEKEC 97 Query: 76 DPRRVVV----FKASSILKKRIMDDMRGRKC 102 + ++ F+ SS ++ + G K Sbjct: 98 TAKNIMAVKINFRPSSSVRPNLTSTRAGDKI 128 >gi|295085882|emb|CBK67405.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 167 Score = 40.3 bits (94), Expect = 0.092, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + L K I+ LS D + L E++ + F TF + K Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86 Query: 68 QTNQEVKIDPR 78 + V++ + Sbjct: 87 -NGKGVELPEK 96 >gi|166711255|ref|ZP_02242462.1| Bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 141 Score = 40.3 bits (94), Expect = 0.092, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55 + ++++ LV I++ L+ KD + +L S + TF Sbjct: 42 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95 Query: 56 ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92 V K R G N T +E +I + + LK Sbjct: 96 TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKIKSRMMKRLKDA 139 >gi|84622954|ref|YP_450326.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|122879099|ref|YP_200053.6| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577987|ref|YP_001914916.1| bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366894|dbj|BAE68052.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522439|gb|ACD60384.1| bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 141 Score = 40.3 bits (94), Expect = 0.092, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 22/105 (20%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH------- 55 + ++++ LV I++ L+ KD + +L S + TF Sbjct: 42 EALSKTGLVAHIAESTQLAPKDVRAVLASLEATAHASLSK------KGVGTFTIPGMLKL 95 Query: 56 ----VKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92 V K R G N T +E +I + + LK Sbjct: 96 TTVHVPAKPKRKGINPFTKEE-QIFAAKPATSKIKSRMMKRLKDA 139 >gi|295084979|emb|CBK66502.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 208 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 +L++ I+ G + D +T + E+ G+++K+ TF Sbjct: 34 ELIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80 >gi|237714092|ref|ZP_04544573.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407144|ref|ZP_06083693.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645671|ref|ZP_06723359.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294808159|ref|ZP_06766926.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229445916|gb|EEO51707.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355847|gb|EEZ04938.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638984|gb|EFF57314.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294444619|gb|EFG13319.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 208 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 +L++ I+ G + D +T + E+ G+++K+ TF Sbjct: 34 ELIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80 >gi|53712344|ref|YP_098336.1| hypothetical protein BF1052 [Bacteroides fragilis YCH46] gi|253563618|ref|ZP_04841075.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265762537|ref|ZP_06091105.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52215209|dbj|BAD47802.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|251947394|gb|EES87676.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263255145|gb|EEZ26491.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301162052|emb|CBW21596.1| conserved hypothetical protein (pseudogene) [Bacteroides fragilis 638R] Length = 142 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 14/47 (29%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 L + + LS D + L I G + I TF Sbjct: 37 KQLAEDLHDNSSLSAGDVLSVLEQLPKAIARHMKEGRTVTIRGLGTF 83 >gi|83952116|ref|ZP_00960848.1| DNA-binding protein HU, putative [Roseovarius nubinhibens ISM] gi|83837122|gb|EAP76419.1| DNA-binding protein HU, putative [Roseovarius nubinhibens ISM] Length = 190 Score = 40.3 bits (94), Expect = 0.094, Method: Composition-based stats. Identities = 6/47 (12%), Positives = 16/47 (34%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 + +L K + G+ + + I ++ +G I + Sbjct: 106 KQELFKKTADRSGIKKNQVKPAIEAALEVIGEALAQGREINLPPLGK 152 >gi|293370020|ref|ZP_06616587.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292634938|gb|EFF53460.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 216 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D T + L + + G + + F + T Sbjct: 43 RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V +D +R V F+A LK Sbjct: 92 EPVTVDTKRKVTKVKLKAIQFRADQTLK 119 >gi|237713397|ref|ZP_04543878.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406769|ref|ZP_06083318.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646032|ref|ZP_06723697.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294810540|ref|ZP_06769193.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|299147744|ref|ZP_07040807.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|229446636|gb|EEO52427.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355472|gb|EEZ04563.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638603|gb|EFF56956.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294442304|gb|EFG11118.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298513927|gb|EFI37813.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 216 Score = 40.3 bits (94), Expect = 0.095, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D T + L + + G + + F + T Sbjct: 43 RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V +D +R V F+A LK Sbjct: 92 EPVTVDTKRKVTKVKLKAIQFRADQTLK 119 >gi|295084660|emb|CBK66183.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A] Length = 216 Score = 40.3 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D T + L + + G + + F + T Sbjct: 43 RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V +D +R V F+A LK Sbjct: 92 EPVTVDTKRKVTKVKLKAIQFRADQTLK 119 >gi|224540648|ref|ZP_03681187.1| hypothetical protein BACCELL_05562 [Bacteroides cellulosilyticus DSM 14838] gi|224517720|gb|EEF86825.1| hypothetical protein BACCELL_05562 [Bacteroides cellulosilyticus DSM 14838] Length = 203 Score = 40.3 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 9/113 (7%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT + + + KE + + + N + D G +++ F K +R Sbjct: 31 TITAKEFQERLMKEQHMPHAMVVGIMQAISNALGDWLAEGYNVELDELGFFSTTLKCTRP 90 Query: 64 GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 Q+ I V V F+ S KK + M + +K Sbjct: 91 AI-----QKKDIRAESVRFETVKFRPSKAFKKYVRHQMELERIDKKASAKKPA 138 >gi|154490223|ref|ZP_02030484.1| hypothetical protein PARMER_00455 [Parabacteroides merdae ATCC 43184] gi|154089115|gb|EDN88159.1| hypothetical protein PARMER_00455 [Parabacteroides merdae ATCC 43184] Length = 168 Score = 40.3 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +SK +T L + ++ + +SR D + + ++ + ++ GE + F Sbjct: 28 VSKELTLKGLSQRVAAQTTVSRADVSAVLISVVENMIEALRDGEQVDFGELGKF 81 >gi|260172730|ref|ZP_05759142.1| putative non-specific DNA-binding protein [Bacteroides sp. D2] gi|315921020|ref|ZP_07917260.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694895|gb|EFS31730.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 167 Score = 40.3 bits (94), Expect = 0.097, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + L K I+ LS D + L E++ + F TF + K Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86 Query: 68 QTNQEVKIDPR 78 + V++ + Sbjct: 87 -NGKGVELPEK 96 >gi|298479601|ref|ZP_06997801.1| DNA-binding protein [Bacteroides sp. D22] gi|298273991|gb|EFI15552.1| DNA-binding protein [Bacteroides sp. D22] Length = 208 Score = 40.3 bits (94), Expect = 0.098, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 +L++ I+ G + D +T + E+ G+++K+ TF Sbjct: 34 ELIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80 >gi|198274911|ref|ZP_03207443.1| hypothetical protein BACPLE_01070 [Bacteroides plebeius DSM 17135] gi|198272358|gb|EDY96627.1| hypothetical protein BACPLE_01070 [Bacteroides plebeius DSM 17135] Length = 198 Score = 40.3 bits (94), Expect = 0.098, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 15/121 (12%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 +T ++ ++I K+ S D +T L +E+ ++ G A+ + F + K + Sbjct: 31 VTTREIREAIRKKCTASPADVAAVITALNDELYENLSNGYAVHLEGIGYFSLSLKCA-PD 89 Query: 65 RNLQ--TNQEVKIDPRRVVVFKASSILKKR---------IMDDMRGRKCNKDDVTSPSGS 113 N + + +V++ R + F L R + + K ++++V Sbjct: 90 INPKYIKDDDVQV---RSIKFTPDKDLIDRFQSVYLERKVDEAHHSTKLDEEEVKKKLAE 146 Query: 114 Y 114 Y Sbjct: 147 Y 147 >gi|237716923|ref|ZP_04547404.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405692|ref|ZP_06082242.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643375|ref|ZP_06721194.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294810641|ref|ZP_06769291.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229442906|gb|EEO48697.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356567|gb|EEZ05657.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641253|gb|EFF59452.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294442183|gb|EFG11000.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 167 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + L K I+ LS D + L E++ + F TF + K Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86 Query: 68 QTNQEVKIDPR 78 + V++ + Sbjct: 87 -NGKGVELPEK 96 >gi|126735586|ref|ZP_01751331.1| DNA-binding protein HU, putative [Roseobacter sp. CCS2] gi|126714773|gb|EBA11639.1| DNA-binding protein HU, putative [Roseobacter sp. CCS2] Length = 105 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 19/52 (36%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + +L+ + L ++D V + I D+ G I + V + Sbjct: 23 KPELLDEVVLRTNLKKRDVKPTVEAALSVIGDALRDGADINVPPLGKLRVVK 74 >gi|29348450|ref|NP_811953.1| hypothetical protein BT_3041 [Bacteroides thetaiotaomicron VPI-5482] gi|298385847|ref|ZP_06995404.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|29340354|gb|AAO78147.1| Histone-like bacterial DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|298261075|gb|EFI03942.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 212 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I + L+ D + +L + + GE + + F VK + + Sbjct: 37 LAKEIQQATSLTEGDVKAVLESLSHFMGSRLREGERVHLDGIGYFQVKLNSLEPITSPKL 96 Query: 70 NQ-EVKIDPRRVVVFKASSILKKRI 93 ++K+ + FKA L+ + Sbjct: 97 KANQMKLKAN--IGFKADKKLRSSV 119 >gi|224539544|ref|ZP_03680083.1| hypothetical protein BACCELL_04449 [Bacteroides cellulosilyticus DSM 14838] gi|224518825|gb|EEF87930.1| hypothetical protein BACCELL_04449 [Bacteroides cellulosilyticus DSM 14838] Length = 169 Score = 40.3 bits (94), Expect = 0.10, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 10/94 (10%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++ + + + + LS D V ++ + + G+ + I+ F + K Sbjct: 30 LGQSVNLAFIAQKMQDRSSLSIGDIRSVVQNFVEKLKEQLLEGKTVNIAGLGVFMLAAKS 89 Query: 61 SRVGRNLQTNQEVKIDPRRV----VVFKASSILK 90 G +++ I + V + F+A+ LK Sbjct: 90 --KG----SDKAEDITAKSVDSVRICFQANKELK 117 >gi|160884909|ref|ZP_02065912.1| hypothetical protein BACOVA_02899 [Bacteroides ovatus ATCC 8483] gi|156109944|gb|EDO11689.1| hypothetical protein BACOVA_02899 [Bacteroides ovatus ATCC 8483] Length = 172 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + L K I+ LS D + L E++ + F TF + K Sbjct: 34 TQLAKEIAAYSSLSTGDVKNTLDNLVTVAAQHLQASESVTLDGFGTFRMVMKS------- 86 Query: 68 QTNQEVKIDPR 78 + V++ + Sbjct: 87 -NGKGVELPEK 96 >gi|260173920|ref|ZP_05760332.1| hypothetical protein BacD2_18782 [Bacteroides sp. D2] gi|315922185|ref|ZP_07918425.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696060|gb|EFS32895.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 208 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 DL++ I+ G + D +T + E+ G+++K+ TF Sbjct: 34 DLIRQIASSSGFNVGDVEGVITQIGIEMAHQMAEGKSVKLDGIGTFS 80 >gi|237718053|ref|ZP_04548534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229452694|gb|EEO58485.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 216 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D T + L + + G + + F + T Sbjct: 43 RIQERCSLTETDVTAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V +D +R V F+A LK Sbjct: 92 EPVTVDTKRKVTKVKLKAIQFRADQTLK 119 >gi|330825850|ref|YP_004389153.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] gi|329311222|gb|AEB85637.1| histone family protein DNA-binding protein [Alicycliphilus denitrificans K601] Length = 134 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 +T+T+S LV ++++ + K + L + + S +G A + V++ Sbjct: 35 ETLTKSALVAHLAEQSSVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVP 94 Query: 59 -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + +A LK Sbjct: 95 AKPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 132 >gi|157093127|gb|ABV22218.1| major basic nuclear protein [Karlodinium micrum] Length = 108 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDVLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPAT 73 Query: 63 VG--RNLQTNQEVKID---PRRVVVFKASSILKKRI 93 RN ++VK+ R +V ++ LKK+I Sbjct: 74 KAGVRN-VFGKDVKVKAKSARTIVKGYCAAALKKQI 108 >gi|325915087|ref|ZP_08177415.1| putative DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325538699|gb|EGD10367.1| putative DNA-binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 140 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISS---FATFHVK 57 + ++++ LV I++ L+ KD + TL + S + + + + HV Sbjct: 41 EALSKTGLVAHIAETTQLAPKDVRAVLATLESAAHSSLSKKGAGSFTLPGMLKLTSVHVP 100 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 K R G N T +E + FK + L K++ D Sbjct: 101 AKPKRKGINPFTKEEQTFAAKPA-SFKVKARLLKKLKDA 138 >gi|224538359|ref|ZP_03678898.1| hypothetical protein BACCELL_03250 [Bacteroides cellulosilyticus DSM 14838] gi|224519988|gb|EEF89093.1| hypothetical protein BACCELL_03250 [Bacteroides cellulosilyticus DSM 14838] Length = 161 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 6/62 (9%) Query: 1 MSKTITRS------DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + K + + D+ +++ G + I + G ++ + +F Sbjct: 25 VGKKMQKKSGRTERDVAHRVAQRTGFHPGVVEAVLAATGEIIEEELSDGRSVTLRGIGSF 84 Query: 55 HV 56 Sbjct: 85 QT 86 >gi|226943961|ref|YP_002799034.1| histone-like protein [Azotobacter vinelandii DJ] gi|226718888|gb|ACO78059.1| histone-like protein [Azotobacter vinelandii DJ] Length = 40 Score = 39.9 bits (93), Expect = 0.11, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 18/39 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG 43 + +S+L+ S++ L + +T+ + L I G Sbjct: 1 MNKSELIASVANHGDLDKATATKVINALLETIAARTEGG 39 >gi|56130790|ref|YP_145693.1| hypothetical protein pMOL30_161 [Ralstonia metallidurans CH34] gi|56068780|emb|CAI11342.1| hypothetical protein [Cupriavidus metallidurans CH34] Length = 122 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ---- 58 +T +S L+ + + L +K + L N I + + A + + F V Sbjct: 23 ETFNKSSLLAHLIAQTELDKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVP 82 Query: 59 -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 R G+N T + V + LK Sbjct: 83 ATKKRFGKNPFTGVDQWFAAKPASVKVKVRPLKKLKDA 120 >gi|317480297|ref|ZP_07939399.1| hypothetical protein HMPREF1007_02516 [Bacteroides sp. 4_1_36] gi|316903538|gb|EFV25390.1| hypothetical protein HMPREF1007_02516 [Bacteroides sp. 4_1_36] Length = 212 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T T+ + V+ I+ L + + +E+CD G +++ F K R Sbjct: 30 RTYTQKEFVEHIATFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 89 Query: 63 V 63 Sbjct: 90 E 90 >gi|323345442|ref|ZP_08085665.1| hypothetical protein HMPREF0663_12201 [Prevotella oralis ATCC 33269] gi|323093556|gb|EFZ36134.1| hypothetical protein HMPREF0663_12201 [Prevotella oralis ATCC 33269] Length = 134 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + K ++ E +S D +T L + + D +G ++K+ TF++ ++ G Sbjct: 11 QISKRLAAESTVSPADVIAVLTALGSVMADYMSQGHSVKLDGVGTFYLTATAAKNG 66 >gi|160888123|ref|ZP_02069126.1| hypothetical protein BACUNI_00531 [Bacteroides uniformis ATCC 8492] gi|270295148|ref|ZP_06201349.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478146|ref|ZP_07937321.1| hypothetical protein HMPREF1007_00437 [Bacteroides sp. 4_1_36] gi|156862434|gb|EDO55865.1| hypothetical protein BACUNI_00531 [Bacteroides uniformis ATCC 8492] gi|270274395|gb|EFA20256.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905744|gb|EFV27523.1| hypothetical protein HMPREF1007_00437 [Bacteroides sp. 4_1_36] Length = 162 Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 K I++ LS DS + L + E++ + TF + K Sbjct: 37 AKEIAELSSLSTGDSKNVIDNLVTVMTRHLQSSESVTLDGLGTFRLTMKS 86 >gi|21232189|ref|NP_638106.1| histone-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767682|ref|YP_242444.1| histone-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|188990799|ref|YP_001902809.1| Bacterial DNA-binding protein [Xanthomonas campestris pv. campestris str. B100] gi|21113945|gb|AAM42030.1| histone-like protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573014|gb|AAY48424.1| histone-like protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732559|emb|CAP50753.1| Bacterial DNA-binding protein [Xanthomonas campestris pv. campestris] Length = 140 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 22/105 (20%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------- 54 + ++++ LV I++ L+ KD + +L S + +F Sbjct: 41 EALSKTGLVAHIAETTQLAPKDVRAVLASLEATAHASLSK------KGVGSFVLPGMLKI 94 Query: 55 ---HVKQKGSRVGRNLQTNQEVKI----DPRRVVVFKASSILKKR 92 +V K R G N T +E ++ + +A LK Sbjct: 95 TSVNVPAKPKRKGINPFTKEE-QVFAARPATCKLKVRAMKRLKDA 138 >gi|315608791|ref|ZP_07883767.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249485|gb|EFU29498.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 159 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L +++ + L R D ++ L + + G+ +K+ F +F + Sbjct: 31 QLAETMQRNCTLKRSDIIAVISELVETMQTALQNGQRVKLDKFGSFKI 78 >gi|237714764|ref|ZP_04545245.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406960|ref|ZP_06083509.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644148|ref|ZP_06721923.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294805713|ref|ZP_06764592.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229445089|gb|EEO50880.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355663|gb|EEZ04754.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640513|gb|EFF58756.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294447036|gb|EFG15624.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 199 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56 T+ + + + + K G+SR + NE D G +++ +F F V Sbjct: 30 TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98 K K I V + F+AS KK + D MR Sbjct: 90 KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122 >gi|29348338|ref|NP_811841.1| putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|253569294|ref|ZP_04846704.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29340242|gb|AAO78035.1| putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251841313|gb|EES69394.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 172 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I + L K I+ LS D + L + E++ + TF + +R G Sbjct: 32 INSAQLSKEIAAYSSLSPGDVKNTLDNLVTVMAQHLQSSESVSVDGLGTFRMVM-SAR-G 89 Query: 65 RNLQTNQEVKID-PRRVVVFKA 85 R ++T EV V F+ Sbjct: 90 RGVETADEVSAAQATLTVRFQP 111 >gi|299147918|ref|ZP_07040981.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|298514101|gb|EFI37987.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] Length = 199 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56 T+ + + + + K G+SR + NE D G +++ +F F V Sbjct: 30 TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98 K K I V + F+AS KK + D MR Sbjct: 90 KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122 >gi|317478530|ref|ZP_07937688.1| hypothetical protein HMPREF1007_00804 [Bacteroides sp. 4_1_36] gi|316905283|gb|EFV27079.1| hypothetical protein HMPREF1007_00804 [Bacteroides sp. 4_1_36] Length = 207 Score = 39.9 bits (93), Expect = 0.13, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L + I L+ D T + + + + G + + F V Sbjct: 37 ELRRDIQARCSLTETDVTAVLDAVSHVMGRELAEGRQVHLDGIGYFRVSLT--------- 87 Query: 69 TNQEVKIDPRRV--------VVFKASSILKKRI 93 T + V +R V F+A LK I Sbjct: 88 TTEPVVAATKRKLTKVKMAGVKFRADQKLKNEI 120 >gi|323345042|ref|ZP_08085266.1| hypothetical protein HMPREF0663_11802 [Prevotella oralis ATCC 33269] gi|323094312|gb|EFZ36889.1| hypothetical protein HMPREF0663_11802 [Prevotella oralis ATCC 33269] Length = 153 Score = 39.9 bits (93), Expect = 0.14, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + L + I + + R D +T L + D A+K++ F F V Sbjct: 34 AALAEKIERNCTVKRSDVVAVLTELIEVMRDELQASHAVKLNGFGIFRV 82 >gi|294507600|ref|YP_003571658.1| hypothetical protein SRM_01785 [Salinibacter ruber M8] gi|294343928|emb|CBH24706.1| hypothetical protein SRM_01785 [Salinibacter ruber M8] Length = 278 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 36/107 (33%), Gaps = 24/107 (22%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 ++ +++ + ++TL E+ A + +++S TF Sbjct: 5 IIPLLAERLDIPEDQVRPLLSTLVEELRQRAAS-DGVQLSGLGTFR-------------- 49 Query: 70 NQEVKIDPRRVVVFKASSILKKRIM---DDMRGRKCNKDDVTSPSGS 113 + + F S L++R+ + + + + PS + Sbjct: 50 ------EEGDALTFDPSPALQRRVNRPYEGLSAESLSPEAEPDPSAA 90 >gi|325919602|ref|ZP_08181614.1| putative DNA-binding protein [Xanthomonas gardneri ATCC 19865] gi|325549938|gb|EGD20780.1| putative DNA-binding protein [Xanthomonas gardneri ATCC 19865] Length = 127 Score = 39.5 bits (92), Expect = 0.14, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG--EAIKISS---FATFHVK 57 + ++++ LV I++ L+ KD + TL + S + + + + HV Sbjct: 28 EALSKTGLVAHIAESTQLAPKDVRAVLATLESVAHSSLSKKGAGSFTLPGMLKLTSVHVP 87 Query: 58 QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 K R G N T +E + FK + L K++ D Sbjct: 88 AKPKRKGINPFTKEEQTFAAKPA-SFKVKARLLKKLKDA 125 >gi|288926742|ref|ZP_06420653.1| DNA-binding protein [Prevotella buccae D17] gi|288336472|gb|EFC74847.1| DNA-binding protein [Prevotella buccae D17] Length = 163 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 22/48 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 L +++ + L R D ++ L + + G+ +K+ F +F + Sbjct: 35 QLAETMQRNCTLKRSDIIAVISELVETMQTALQNGQRVKLDKFGSFKI 82 >gi|260575010|ref|ZP_05843011.1| alginate regulatory protein AlgP [Rhodobacter sp. SW2] gi|259022632|gb|EEW25927.1| alginate regulatory protein AlgP [Rhodobacter sp. SW2] Length = 157 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 DLV + K G +K V + D+ +GE + + +RVGR Sbjct: 69 KDLVDRVVKATGGKKKGIKEIVVATLASLGDALTKGEDLNLPPLG-------KARVGR 119 >gi|281420928|ref|ZP_06251927.1| putative DNA-binding protein [Prevotella copri DSM 18205] gi|281405220|gb|EFB35900.1| putative DNA-binding protein [Prevotella copri DSM 18205] Length = 175 Score = 39.5 bits (92), Expect = 0.15, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 17/91 (18%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T ++ I+ E + D + + ++ +G I++ F +++ Sbjct: 32 TLTTEEVANQIAVESTATPADVKAVLDRYAYYVKENLKKGYDIELLGFGKLYIRF----- 86 Query: 64 GRNLQTNQEVKIDPR--------RVVVFKAS 86 T + V+ + + V F+ S Sbjct: 87 ----ITGKAVEDESKANAKLVKSLVPAFRPS 113 >gi|330893673|gb|EGH26334.1| single-stranded binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 55 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +T+ LV I++ + + + + L + D G I + V Sbjct: 2 ALTKDQLVVGIAEAIDAPKTTALKALEQLGQIVADQLESGAEITLPGIGKLKV 54 >gi|295084777|emb|CBK66300.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 202 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +VK I++ + D + N+I + V G +++ + F K K +R + + Sbjct: 36 QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 94 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 +I + + V F+ SS +K++ + K Sbjct: 95 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 128 >gi|160891814|ref|ZP_02072817.1| hypothetical protein BACUNI_04271 [Bacteroides uniformis ATCC 8492] gi|156858292|gb|EDO51723.1| hypothetical protein BACUNI_04271 [Bacteroides uniformis ATCC 8492] Length = 255 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T T+ + V+ I+ L + + +E+CD G +++ F K R Sbjct: 73 RTYTQKEFVEHIATFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 132 Query: 63 V 63 Sbjct: 133 E 133 >gi|222111316|ref|YP_002553580.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] gi|221730760|gb|ACM33580.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY] Length = 134 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVKQ-- 58 +T+T+S LV ++++ + K + L + + S +G A + V++ Sbjct: 35 ETLTKSALVAHLAEQSSVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVP 94 Query: 59 -KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + +A LK Sbjct: 95 AKPKRKGINPFTKEEQVFAAKPATVRIKARALKRLKDA 132 >gi|255691380|ref|ZP_05415055.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260623024|gb|EEX45895.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 200 Score = 39.5 bits (92), Expect = 0.16, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56 T+ + + + + K G+SR + NE D G +++ +F F V Sbjct: 30 TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98 K K I V + F+AS KK + D MR Sbjct: 90 KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122 >gi|270296495|ref|ZP_06202695.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273899|gb|EFA19761.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 255 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T T+ + V+ I+ L + + +E+CD G +++ F K R Sbjct: 73 RTYTQKEFVEHIATFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 132 Query: 63 V 63 Sbjct: 133 E 133 >gi|167762302|ref|ZP_02434429.1| hypothetical protein BACSTE_00655 [Bacteroides stercoris ATCC 43183] gi|167699945|gb|EDS16524.1| hypothetical protein BACSTE_00655 [Bacteroides stercoris ATCC 43183] Length = 206 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 +T T+ + V+ ++ L + + +E+CD G +++ F K Sbjct: 30 ETYTQKEFVEHVAMFQHLPKNIIGAALDACIDELCDLLASGNIVELGELGFFSTSLK 86 >gi|295084954|emb|CBK66477.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 170 Score = 39.5 bits (92), Expect = 0.17, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 K + + + I+++ L+ D + L + + + + +++ TF + K + Sbjct: 30 KMVNTQKMAELIAEKASLTAGDVHNVIRNLMSVMREQLLNSRTVRLEGLGTFTMIAKANG 89 Query: 63 VG 64 G Sbjct: 90 KG 91 >gi|323345365|ref|ZP_08085588.1| hypothetical protein HMPREF0663_12124 [Prevotella oralis ATCC 33269] gi|323345381|ref|ZP_08085604.1| hypothetical protein HMPREF0663_12140 [Prevotella oralis ATCC 33269] gi|323345553|ref|ZP_08085776.1| hypothetical protein HMPREF0663_12312 [Prevotella oralis ATCC 33269] gi|323093479|gb|EFZ36057.1| hypothetical protein HMPREF0663_12124 [Prevotella oralis ATCC 33269] gi|323093495|gb|EFZ36073.1| hypothetical protein HMPREF0663_12140 [Prevotella oralis ATCC 33269] gi|323093667|gb|EFZ36245.1| hypothetical protein HMPREF0663_12312 [Prevotella oralis ATCC 33269] Length = 147 Score = 39.5 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGS 61 ++ + I + D + + N G+ + + F F V K K + Sbjct: 35 EISQEIQDNTTAKQADVYVVLKEMINVFRRHLQNGDRVVLEGFGAFKVGLKSKPA 89 >gi|37542939|gb|AAL61531.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253253|gb|ABI14214.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253255|gb|ABI14215.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253263|gb|ABI14219.1| major basic nuclear protein [Pfiesteria piscicida] Length = 112 Score = 39.5 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K+IT+ L +IS E L + D ++ +T L + + + I A + K + Sbjct: 17 GKSITKGGLADAISGETELKKSDCSKVLTALAEVVAKEVKKTGKVIIPGIARIVTRTKPA 76 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + G+ + V + R VV + +K+ + Sbjct: 77 TKAGKREMFGKVVVVKARPARTVVKAFPVAAIKQAV 112 >gi|317474337|ref|ZP_07933613.1| hypothetical protein HMPREF1016_00592 [Bacteroides eggerthii 1_2_48FAA] gi|316909647|gb|EFV31325.1| hypothetical protein HMPREF1016_00592 [Bacteroides eggerthii 1_2_48FAA] Length = 165 Score = 39.1 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + I + G+S +D VT L I G+++K+ F Sbjct: 40 IAQEIEELGGMSAEDVEHVVTALVRNIKRKLTDGDSVKLDGLGVF 84 >gi|295700076|ref|YP_003607969.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] gi|295439289|gb|ADG18458.1| histone family protein DNA-binding protein [Burkholderia sp. CCGE1002] Length = 150 Score = 39.1 bits (91), Expect = 0.18, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58 T T++ L I++ + K + + L + I + +G +S V+ Sbjct: 51 TFTKASLAAHIAERAAVEPKTAKAVLAALEDTILGTVHKKGAGEFTLSGLLKIVVQAVPA 110 Query: 59 KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 K R G++ T +E + + +A LK Sbjct: 111 KKKRFGKDPFTGEERWFPAKPASVRIKARALKKLKDA 147 >gi|332295212|ref|YP_004437135.1| hypothetical protein Thena_0358 [Thermodesulfobium narugense DSM 14796] gi|332178315|gb|AEE14004.1| hypothetical protein Thena_0358 [Thermodesulfobium narugense DSM 14796] Length = 143 Score = 39.1 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Query: 9 DLVKSIS--KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 DLV+ IS +E G+S+ R + T I + + G+ ++I TF+++Q Sbjct: 8 DLVRDISNEEEIGISK--VRRIIATFLASIKNQVLLGKRVRIKGLGTFYLQQ 57 >gi|329956215|ref|ZP_08296895.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328524689|gb|EGF51750.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 131 Score = 39.1 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 23/51 (45%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 T+ DL ++IS++ ++ D + +L + G ++ + +F Sbjct: 26 TVNTQDLGEAISRKCTVTPADVHAVIRSLPEVMSFFMENGNSVHLDGLGSF 76 >gi|319901326|ref|YP_004161054.1| hypothetical protein Bache_1463 [Bacteroides helcogenes P 36-108] gi|319416357|gb|ADV43468.1| hypothetical protein Bache_1463 [Bacteroides helcogenes P 36-108] Length = 203 Score = 39.1 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 9/98 (9%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT +L++ SK G + ++F+ + +G +++ F F K K +R+ Sbjct: 31 TITAKELLEYTSKCSGFKVGAMDGMLMSIFDGMVHWLNQGFRVELGEFGYFSGKIKANRL 90 Query: 64 GRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDM 97 ++ I + V F+ S+ LKK + ++ Sbjct: 91 V-----KKKTDIRSGSIHFGDVNFRPSAKLKKALDGEL 123 >gi|257469437|ref|ZP_05633529.1| hypothetical protein FulcA4_08873 [Fusobacterium ulcerans ATCC 49185] gi|317063681|ref|ZP_07928166.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689357|gb|EFS26192.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 39.1 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 24/69 (34%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S ++ + +N + + + + + F K+ R + +PR Sbjct: 18 SHREVREKIELFWNVLLKALEEDKKVTFKEWGVFERKEMKPRKVLVPMWEKPTYTEPREA 77 Query: 81 VVFKASSIL 89 + F+A L Sbjct: 78 IKFRAGKGL 86 >gi|253565782|ref|ZP_04843237.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764156|ref|ZP_06092724.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|251946061|gb|EES86468.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256764|gb|EEZ28110.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163495|emb|CBW23046.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 159 Score = 39.1 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 17/45 (37%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 L + I L+ D + L ++ +G +KI TF Sbjct: 40 LAEDIQTNCALTTGDVKHTIEALVEQLRKVLTQGNKVKIEGLGTF 84 >gi|330988301|gb|EGH86404.1| HU family DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 48 Score = 39.1 bits (91), Expect = 0.19, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 17/47 (36%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50 +T+ L+ I++ + + + L + D G I + Sbjct: 2 ALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPG 48 >gi|257470013|ref|ZP_05634105.1| hypothetical protein FulcA4_11778 [Fusobacterium ulcerans ATCC 49185] gi|317064238|ref|ZP_07928723.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689914|gb|EFS26749.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 39.1 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S K+ + ++ + + + + + F ++ SR + P+ V Sbjct: 18 SHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKREIKSRKIKVPTLEGARYTKPKEV 77 Query: 81 VVFKASSIL 89 + F+A L Sbjct: 78 IKFRAGKGL 86 >gi|260174297|ref|ZP_05760709.1| hypothetical protein BacD2_20736 [Bacteroides sp. D2] gi|315922565|ref|ZP_07918805.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696440|gb|EFS33275.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 209 Score = 39.1 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 21/88 (23%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTN 70 I + L+ D + + L + + G + + F + T Sbjct: 43 RIQERCSLTETDVSAVLDALSHIMGQELAEGRQVHLDGIGYF-----------HPCLTTT 91 Query: 71 QEVKIDPRRVVV--------FKASSILK 90 + V I +R F+A LK Sbjct: 92 EPVTIGTKRKATKVKLKAIQFRADQTLK 119 >gi|255011111|ref|ZP_05283237.1| hypothetical protein Bfra3_18362 [Bacteroides fragilis 3_1_12] gi|313148921|ref|ZP_07811114.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137688|gb|EFR55048.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 156 Score = 39.1 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKI 75 ++ LS D +T + S G+++ I F F + + G + E Sbjct: 44 EKSSLSLGDIKSVLTNFVEAMRTSLYNGQSVNIRDFGVFSLSART--KGVD----AEKDC 97 Query: 76 DPRRVVV----FKASSILKKRIMDDMRGRKC 102 + ++ F+ SS ++ + G + Sbjct: 98 TAKNIMAVKINFRPSSSVRPNLTSTRAGDRI 128 >gi|255611551|ref|XP_002539319.1| conserved hypothetical protein [Ricinus communis] gi|223507189|gb|EEF23063.1| conserved hypothetical protein [Ricinus communis] Length = 78 Score = 39.1 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 20/33 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFN 34 T+TR+DL +++ +E GL+R+D V + Sbjct: 45 GSTLTRADLCEAVHEEVGLTRQDCAGLVERTLD 77 >gi|298479855|ref|ZP_06998055.1| DNA-binding protein [Bacteroides sp. D22] gi|298274245|gb|EFI15806.1| DNA-binding protein [Bacteroides sp. D22] Length = 236 Score = 39.1 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +VK I++ + D + N+I + V G +++ + F K K +R + + Sbjct: 70 QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 128 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 +I + + V F+ SS +K++ + K Sbjct: 129 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 162 >gi|218132037|ref|ZP_03460841.1| hypothetical protein BACEGG_03662 [Bacteroides eggerthii DSM 20697] gi|317477198|ref|ZP_07936438.1| hypothetical protein HMPREF1016_03422 [Bacteroides eggerthii 1_2_48FAA] gi|217985797|gb|EEC52137.1| hypothetical protein BACEGG_03662 [Bacteroides eggerthii DSM 20697] gi|316906634|gb|EFV28348.1| hypothetical protein HMPREF1016_03422 [Bacteroides eggerthii 1_2_48FAA] Length = 131 Score = 39.1 bits (91), Expect = 0.20, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 16/95 (16%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+ DL ++IS+ ++ D + +L + G ++ + +F+ K + Sbjct: 26 TVNTQDLGEAISRRCTVTPADVHAVIRSLPEVMSFFMENGNSVHLDGLGSFYYKLSCAGN 85 Query: 64 GRNLQTNQEVK-----------IDPRRVVVFKASS 87 G + T +EV I RR K Sbjct: 86 GVD--TPEEVSREQVKAVRVQFIPERRK---KCGK 115 >gi|295084802|emb|CBK66325.1| hypothetical protein [Bacteroides xylanisolvens XB1A] Length = 199 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56 T+ + + + + K G+SR + NE D G +++ +F F V Sbjct: 30 TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98 K K I V + F+AS KK + D MR Sbjct: 90 KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122 >gi|218129855|ref|ZP_03458659.1| hypothetical protein BACEGG_01436 [Bacteroides eggerthii DSM 20697] gi|217987965|gb|EEC54290.1| hypothetical protein BACEGG_01436 [Bacteroides eggerthii DSM 20697] Length = 204 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 TI + + + + + G+SR +T +E+ D V G +++ F Sbjct: 31 TIDKKEFIDRVHRFTGISRSVLEGSMTAFMDELRDCLVGGWTVELGELGYFS 82 >gi|29346117|ref|NP_809620.1| hypothetical protein BT_0707 [Bacteroides thetaiotaomicron VPI-5482] gi|253568460|ref|ZP_04845871.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385482|ref|ZP_06995040.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14] gi|29338011|gb|AAO75814.1| putative non-specific DNA binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251842533|gb|EES70613.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298261623|gb|EFI04489.1| non-specific DNA binding protein [Bacteroides sp. 1_1_14] Length = 162 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 16/102 (15%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ-------KGSRVGRNLQ 68 + LS D +T + + G+++ I F F + K +N++ Sbjct: 37 DKSSLSLGDIQSVLTNYVEAMRAALFDGKSVNIRDFGVFSLSAHTLGATTKEECTVKNIK 96 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSP 110 ++I F+ SS ++ + G K D+ +P Sbjct: 97 ---SIQI------NFRPSSSVRPNLTSTRAGDKIEFLDLEAP 129 >gi|260593339|ref|ZP_05858797.1| putative DNA-binding protein [Prevotella veroralis F0319] gi|260534615|gb|EEX17232.1| putative DNA-binding protein [Prevotella veroralis F0319] Length = 198 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 21/113 (18%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV----------KQK 59 + K+I + L+ D T + +L EI G + + F V + Sbjct: 35 ISKNIVQATSLTAGDITATILSLKEEITRELKDGNNVHLPGIGYFSVALKGDIYKDPRSH 94 Query: 60 GSRVGRNLQTNQEVKIDPRRVVVFKASSI-LKKRIMDDMRGRKCNKDDVTSPS 111 R+ RN R + F+ L++ M +++ ++ ++P+ Sbjct: 95 KPRL-RN---------AEVRTIKFRPDKEILQEMTMIEVKNVTEVEELASAPT 137 >gi|255009475|ref|ZP_05281601.1| hypothetical protein Bfra3_10072 [Bacteroides fragilis 3_1_12] gi|313147245|ref|ZP_07809438.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136012|gb|EFR53372.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 159 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 17/45 (37%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 L + I L+ D + L ++ +G +KI TF Sbjct: 40 LAEDIQTNCALTTGDVKHTIEALVEQLRKVLTQGNKVKIEGLGTF 84 >gi|237714806|ref|ZP_04545287.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262406920|ref|ZP_06083469.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229445131|gb|EEO50922.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262355623|gb|EEZ04714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 236 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +VK I++ + D + N+I + V G +++ + F K K +R + + Sbjct: 70 QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 128 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 +I + + V F+ SS +K++ + K Sbjct: 129 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 162 >gi|160885247|ref|ZP_02066250.1| hypothetical protein BACOVA_03246 [Bacteroides ovatus ATCC 8483] gi|156109597|gb|EDO11342.1| hypothetical protein BACOVA_03246 [Bacteroides ovatus ATCC 8483] Length = 199 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56 T+ + + + + K G+SR + NE D G +++ +F F V Sbjct: 30 TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98 K K I V + F+AS KK + D MR Sbjct: 90 KDKKE-------------IRAASVQMKNINFRASRPFKKEVGDKMR 122 >gi|126664176|ref|ZP_01735169.1| hypothetical protein FBBAL38_11119 [Flavobacteria bacterium BAL38] gi|126623890|gb|EAZ94585.1| hypothetical protein FBBAL38_11119 [Flavobacteria bacterium BAL38] Length = 127 Score = 39.1 bits (91), Expect = 0.21, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 20/96 (20%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL + ++ +SR D + L + I +S G +++ + TF + Sbjct: 36 DLARIVASRTTMSRPDCFGVIMALSDVIGESLANGNIVRVDNLGTFQLN----------L 85 Query: 69 TNQEVK---------IDPRRVVVFKASSILKKRIMD 95 T I ++ ++ S LK R+ Sbjct: 86 TGTPADSDAVIGKSNIKEAKI-NYRPSKELKNRMKK 120 >gi|255010367|ref|ZP_05282493.1| hypothetical protein Bfra3_14619 [Bacteroides fragilis 3_1_12] gi|313148166|ref|ZP_07810359.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136933|gb|EFR54293.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 148 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGSRVGRNLQTNQEVKIDPRRV 80 D + L +E+ D RGE +++ + TF V + KG+ + + I RV Sbjct: 52 ADVVAVLKALEDEMVDGLSRGEIVRLGNIGTFQVGLRSKGAEK---PEDFKAANISKARV 108 Query: 81 VVFKASSILKKRIM 94 F+ +L + Sbjct: 109 -NFRPGPVLADAMK 121 >gi|150006528|ref|YP_001301272.1| hypothetical protein BVU_4048 [Bacteroides vulgatus ATCC 8482] gi|149934952|gb|ABR41650.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 130 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +FN + + +G+ + + TF V K Sbjct: 53 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 86 >gi|313148602|ref|ZP_07810795.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137369|gb|EFR54729.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 175 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 7 RSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ + SI+KE LS +D T + ++ S V G +K+ TF++ Sbjct: 50 KTATIASIAKEIEITGALSAEDVTHVMQAFVRQLKKSLVEGNKVKVDGLGTFYI 103 >gi|299142978|ref|ZP_07036104.1| conserved hypothetical protein [Prevotella oris C735] gi|298575594|gb|EFI47474.1| conserved hypothetical protein [Prevotella oris C735] Length = 95 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 1 MSKT--ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48 M+ T ++ + +VK + K +S D + L E+ ++ G +++ Sbjct: 7 MAPTTPMSLAQIVKRVEKRLTVSSADVKAVLEALQFEVMEALENGNTVRL 56 >gi|255010800|ref|ZP_05282926.1| hypothetical protein Bfra3_16793 [Bacteroides fragilis 3_1_12] Length = 174 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Query: 7 RSDLVKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ + SI+KE LS +D T + ++ S V G +K+ TF++ Sbjct: 49 KTATIASIAKEIEITGALSAEDVTHVMQAFVRQLKKSLVEGNKVKVDGLGTFYI 102 >gi|237716758|ref|ZP_04547239.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237720497|ref|ZP_04550978.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262405533|ref|ZP_06082083.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|293371567|ref|ZP_06617985.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|294647598|ref|ZP_06725170.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294805828|ref|ZP_06764703.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229442741|gb|EEO48532.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229450248|gb|EEO56039.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262356408|gb|EEZ05498.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292633515|gb|EFF52080.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292637056|gb|EFF55502.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446965|gb|EFG15557.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 158 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+ DL K +S + + L + + + +G ++++ F F Sbjct: 29 TNTVNFRDLCKEVSMFGMIPEGAVKHVIDALIDTLNTNLNKGLSVQLGDFGCF------- 81 Query: 62 RVGRNLQT-NQEVKIDP---RRV-VVFKASSILKKRIMD 95 R G N ++ N+E +D RRV +VF K + + Sbjct: 82 RPGMNCKSQNEEKDVDADTVRRVKIVFTPGYKFKDMLDN 120 >gi|319901832|ref|YP_004161560.1| hypothetical protein Bache_1997 [Bacteroides helcogenes P 36-108] gi|319416863|gb|ADV43974.1| hypothetical protein Bache_1997 [Bacteroides helcogenes P 36-108] Length = 216 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T TR + V+ ++ L + + +++CD G +++ F K R Sbjct: 30 RTYTRKEFVEHVAMFQHLPKNMIGAALDACIDDLCDLLADGNIVELGELGFFSTSLKCLR 89 Query: 63 V 63 Sbjct: 90 E 90 >gi|237712275|ref|ZP_04542756.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229453596|gb|EEO59317.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 130 Score = 39.1 bits (91), Expect = 0.22, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +FN + + +G+ + + TF V K Sbjct: 53 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 86 >gi|126726311|ref|ZP_01742152.1| hypothetical protein RB2150_01384 [Rhodobacterales bacterium HTCC2150] gi|126704174|gb|EBA03266.1| hypothetical protein RB2150_01384 [Rhodobacterales bacterium HTCC2150] Length = 89 Score = 39.1 bits (91), Expect = 0.23, Method: Composition-based stats. Identities = 5/51 (9%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 5 ITR------SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49 + + S+L + ++ + + D+ + + ++ GE+ + Sbjct: 1 MNKDKVVRQSELAERVAARTDIKKSDAKAASLAAIDVVIEALHNGESFVLP 51 >gi|319902380|ref|YP_004162108.1| DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319417411|gb|ADV44522.1| DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 212 Score = 38.7 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 17/92 (18%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH----VKQKGSRVG 64 D+ ++++ +R D + + EI S G ++KI F ++Q R Sbjct: 34 DIARTVAYATSFTRGDIKGLLQAVTEEIACSLGGGYSVKIEGLGIFTPALGLRQGKERE- 92 Query: 65 RNLQTNQEVKIDPRRV-------VVFKASSIL 89 + +E R V FKA Sbjct: 93 ----SGEEGD-PKRNAASICLKDVNFKADKDF 119 >gi|189465478|ref|ZP_03014263.1| hypothetical protein BACINT_01831 [Bacteroides intestinalis DSM 17393] gi|189437752|gb|EDV06737.1| hypothetical protein BACINT_01831 [Bacteroides intestinalis DSM 17393] Length = 212 Score = 38.7 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++ I L+ D + + L + + + G + + FH K G ++ Sbjct: 36 EIRHKIQARSSLTETDVSAVLDALSHIMGEELAEGRQVHLDGIGYFHPTLKCE-EGITME 94 Query: 69 TN---QEVKIDPRRVVVFKASSILKKRI 93 T ++VK+ + + F+A LK I Sbjct: 95 TKRKNEKVKL---KGIKFRADQALKNEI 119 >gi|167566381|ref|ZP_02359297.1| histone family protein DNA-binding protein [Burkholderia oklahomensis EO147] gi|167573495|ref|ZP_02366369.1| histone family protein DNA-binding protein [Burkholderia oklahomensis C6786] Length = 117 Score = 38.7 bits (90), Expect = 0.24, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K +T L N I S +G + V K Sbjct: 21 TKASLAAHIAERAEVELKAVKAVLTALENAILGSIHKKGAGEFTLPGLLKISAQAVPAKK 80 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 81 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115 >gi|224535601|ref|ZP_03676140.1| hypothetical protein BACCELL_00465 [Bacteroides cellulosilyticus DSM 14838] gi|224522792|gb|EEF91897.1| hypothetical protein BACCELL_00465 [Bacteroides cellulosilyticus DSM 14838] Length = 211 Score = 38.7 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 17/89 (19%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------HVKQKGSRVG 64 I + L+ D + + L + + + G + + F +K+ R Sbjct: 41 KIQERCSLTETDVSAVLDALSHAMGEELAEGRQVHLDGIGYFHPTLTCTEEIKEDTKRK- 99 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T + + + F+A L+ I Sbjct: 100 ---NTKVRL-----KGIKFRADQELRSEI 120 >gi|294647580|ref|ZP_06725155.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294808257|ref|ZP_06767018.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|292637072|gb|EFF55515.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294444541|gb|EFG13247.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 202 Score = 38.7 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +VK I++ + D + N+I + V G +++ + F K K +R + + Sbjct: 36 QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 94 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 +I + + V F+ SS +K++ + K Sbjct: 95 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 128 >gi|224536006|ref|ZP_03676545.1| hypothetical protein BACCELL_00870 [Bacteroides cellulosilyticus DSM 14838] gi|224522373|gb|EEF91478.1| hypothetical protein BACCELL_00870 [Bacteroides cellulosilyticus DSM 14838] Length = 207 Score = 38.7 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 15/90 (16%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF----HVKQKGSRVGR 65 + K+++++ S+ D + L E+ +G+++K+ TF ++ R Sbjct: 35 IAKTLAQKSAFSKGDVVGLLQELGEELAYQMGQGKSVKLDGIGTFVPSLALRADKERE-- 92 Query: 66 NLQTNQEVKID--PRRVVV----FKASSIL 89 T +E R +VV F+A L Sbjct: 93 ---TGEEDSTRRNARSIVVGSINFRAEKEL 119 >gi|294778854|ref|ZP_06744271.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294447307|gb|EFG15890.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 114 Score = 38.7 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +FN + + +G+ + + TF V K Sbjct: 37 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 70 >gi|281422072|ref|ZP_06253071.1| putative DNA-binding protein [Prevotella copri DSM 18205] gi|281403861|gb|EFB34541.1| putative DNA-binding protein [Prevotella copri DSM 18205] Length = 175 Score = 38.7 bits (90), Expect = 0.25, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 17/91 (18%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T+T ++ I+ E + D + + ++ +G I++ F ++ Sbjct: 32 TLTTEEVANQIAVESTATPADVKAVLDRYAYYVKENLKKGYDIELLGFGKLFIRF----- 86 Query: 64 GRNLQTNQEVKIDPR--------RVVVFKAS 86 T + V+ + + V F+ S Sbjct: 87 ----ITGKAVEDESKANAKLVKSLVPAFRPS 113 >gi|329956696|ref|ZP_08297269.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328524068|gb|EGF51144.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 161 Score = 38.7 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 19/52 (36%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +V + + LS+ D + + + G ++ I F F + + Sbjct: 38 MVYQMKENSSLSKGDIFSVIANFVECMRTNLYNGHSVNIRDFGVFSLSARTE 89 >gi|298480464|ref|ZP_06998661.1| DNA-binding protein [Bacteroides sp. D22] gi|298273285|gb|EFI14849.1| DNA-binding protein [Bacteroides sp. D22] Length = 158 Score = 38.7 bits (90), Expect = 0.26, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+ DL K +S + + L + + + +G ++++ F F Sbjct: 29 TNTVNFRDLCKEVSMFGMIPEGAVKHVIDALIDALNTNLNKGLSVQLGDFGCF------- 81 Query: 62 RVGRNLQT-NQEVKIDP---RRV-VVFKASSILKKRIMD 95 R G N ++ N+E +D RRV +VF K + + Sbjct: 82 RPGMNCKSQNEEKDVDADTVRRVKIVFTPGYKFKDMLDN 120 >gi|34540166|ref|NP_904645.1| histone-like family DNA-binding protein [Porphyromonas gingivalis W83] gi|34396478|gb|AAQ65544.1| DNA-binding protein, histone-like family [Porphyromonas gingivalis W83] Length = 171 Score = 38.7 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I++E L+ D + L N + + G+ ++I +F + GS+ + + Sbjct: 38 LCKRIAEESALTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRLSF-GSKQLDDPKN 96 Query: 70 NQEVKIDPRRVVVFKASSILK 90 +I R+V F S+ LK Sbjct: 97 FSVDQIQKHRLV-FIPSAELK 116 >gi|319900308|ref|YP_004160036.1| DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319415339|gb|ADV42450.1| DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 164 Score = 38.7 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + + I++ LS DS + L + E++ + TF + K ++ G Sbjct: 34 TQVAREIAELSSLSTGDSKNVIDNLVTVLTRHLQSSESVTLDGLGTFRLVMKSTQNG 90 >gi|293372365|ref|ZP_06618749.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292632548|gb|EFF51142.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 212 Score = 38.7 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + D G+++ + F +K + + Sbjct: 37 LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA LKK + Sbjct: 97 KAN-QIKLKANISFKADVKLKKSV 119 >gi|212550313|ref|YP_002308633.1| hypothetical protein CFPG_P3-25 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549446|dbj|BAG84111.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 139 Score = 38.7 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 22/47 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51 + D+++++S G S++ + +E+ + G + ++ F Sbjct: 1 MNTVDIIRNVSLSSGFSQRAVKKVFRNCIDEMKQMLLTGHKVSLTGF 47 >gi|153806480|ref|ZP_01959148.1| hypothetical protein BACCAC_00744 [Bacteroides caccae ATCC 43185] gi|149131157|gb|EDM22363.1| hypothetical protein BACCAC_00744 [Bacteroides caccae ATCC 43185] Length = 159 Score = 38.7 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 16/89 (17%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++ + IS L+ D + L ++ G+ +K+ +F TF ++ Sbjct: 37 EMAEEISYATSLTDGDVLNVLRALIRQMKVQLAAGKIVKMENFGTFQIQVCS-------- 88 Query: 69 TNQEVK-------IDPRRVVVFKASSILK 90 T E K I + F+ ++K Sbjct: 89 TGTEAKKEFTASNITAAHI-QFRPGKMVK 116 >gi|257469062|ref|ZP_05633156.1| hypothetical protein FulcA4_06940 [Fusobacterium ulcerans ATCC 49185] gi|317063308|ref|ZP_07927793.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688984|gb|EFS25819.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 106 Score = 38.7 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 S K++ + ++ I + + + F TF VK+ SR N+ N R Sbjct: 18 SIKEAKEKLKIFWDIIFAGIALEKKVTVKDFGTFEVKKLKSRKIYNIHKNSLYMTKERTA 77 Query: 81 VVFKASSILKKRIMDDM 97 + F+ + K + + Sbjct: 78 LKFRVKNEFMKIVNKKV 94 >gi|237717121|ref|ZP_04547602.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405891|ref|ZP_06082441.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647849|ref|ZP_06725401.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806246|ref|ZP_06765093.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229443104|gb|EEO48895.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356766|gb|EEZ05856.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636757|gb|EFF55223.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446502|gb|EFG15122.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 212 Score = 38.7 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + D G+++ + F +K + + Sbjct: 37 LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA LKK + Sbjct: 97 KAN-QIKLKANISFKADVKLKKSV 119 >gi|237726416|ref|ZP_04556897.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434942|gb|EEO45019.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 130 Score = 38.7 bits (90), Expect = 0.29, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +FN + + +G+ + + TF V K Sbjct: 53 EAVLEEVFNRLSEHLAQGDRVTLDGLGTFSVSLK 86 >gi|255010080|ref|ZP_05282206.1| hypothetical protein Bfra3_13150 [Bacteroides fragilis 3_1_12] gi|313147875|ref|ZP_07810068.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136642|gb|EFR54002.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 166 Score = 38.7 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 17/52 (32%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 K + + +++ L D +T L + I G + I F Sbjct: 32 KPVNSVQIANQLAERSSLQNGDVLSALTQLSDIIAAHLKEGRTVSIDGLGNF 83 >gi|188995495|ref|YP_001929747.1| piutative DNA-binding protein histone-like family [Porphyromonas gingivalis ATCC 33277] gi|188595175|dbj|BAG34150.1| piutative DNA-binding protein histone-like family [Porphyromonas gingivalis ATCC 33277] Length = 172 Score = 38.7 bits (90), Expect = 0.30, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I++E L+ D + L N + + G+ ++I +F + GS+ + + Sbjct: 38 LCKRIAEESALTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRLSF-GSKQLDDPKN 96 Query: 70 NQEVKIDPRRVVVFKASSILK 90 +I R+V F S+ LK Sbjct: 97 FSVDQIQKHRLV-FIPSAELK 116 >gi|329955256|ref|ZP_08296213.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328526255|gb|EGF53274.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 165 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + I + G+S +D VT L I G+++K+ F Sbjct: 40 IAQEIEELGGMSAEDVEHVVTALVRNIKRKLTDGDSVKLDGLGVF 84 >gi|218259849|ref|ZP_03475402.1| hypothetical protein PRABACTJOHN_01061 [Parabacteroides johnsonii DSM 18315] gi|218224885|gb|EEC97535.1| hypothetical protein PRABACTJOHN_01061 [Parabacteroides johnsonii DSM 18315] Length = 344 Score = 38.4 bits (89), Expect = 0.31, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45 ++K+I R+DL K+++ +S+ ++ + V + + + Sbjct: 232 LAKSIDRNDLAKALANNTDMSKAEADKAVKQYTEIMQKATAEADK 276 >gi|160885219|ref|ZP_02066222.1| hypothetical protein BACOVA_03217 [Bacteroides ovatus ATCC 8483] gi|156109569|gb|EDO11314.1| hypothetical protein BACOVA_03217 [Bacteroides ovatus ATCC 8483] Length = 202 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +VK I++ + D + N+I + V G +++ + F K K +R + + Sbjct: 36 QIVKEIAQASSFTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAKLK-ARPVMDAK 94 Query: 69 TNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 +I + + V F+ SS +K++ + K Sbjct: 95 -----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 128 >gi|224026942|ref|ZP_03645308.1| hypothetical protein BACCOPRO_03701 [Bacteroides coprophilus DSM 18228] gi|224020178|gb|EEF78176.1| hypothetical protein BACCOPRO_03701 [Bacteroides coprophilus DSM 18228] Length = 166 Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRK-DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 S+ + + + I+ + ++ D +T + + + + G+ +++ F+V+ Sbjct: 28 SEVMNINQFAEHIASHGSVYKRSDVAAILTMAVDCLREQLLEGKKVELGDLGFFYVR 84 >gi|288803836|ref|ZP_06409262.1| putative non-specific DNA binding protein [Prevotella melaninogenica D18] gi|288333670|gb|EFC72119.1| putative non-specific DNA binding protein [Prevotella melaninogenica D18] Length = 149 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 9/98 (9%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGSRVGRN 66 D+ + I+ L+R D + + + + G +I++ +F + V KG+ + Sbjct: 33 DIARDIAGRSSLTRGDVSNVLYNFIDCLPHYLRDGFSIQLGNFGSMRVTLSSKGAETEKA 92 Query: 67 LQTNQEVKIDPRRVVVFKASSILKK--RIMDDMRGRKC 102 +T I PR VVF + LK+ + RK Sbjct: 93 FKTE---TIKPR--VVFTPGTELKRELAVNSYESVRKT 125 >gi|160888495|ref|ZP_02069498.1| hypothetical protein BACUNI_00912 [Bacteroides uniformis ATCC 8492] gi|156862172|gb|EDO55603.1| hypothetical protein BACUNI_00912 [Bacteroides uniformis ATCC 8492] Length = 207 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 11/90 (12%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKGSRV 63 +L + I + L+ D + + L + + + G + + F + + Sbjct: 37 ELRRRIQERSSLTETDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFYPVLTSTEPVTAAT 96 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R +T ++K+ + + F+A +LK I Sbjct: 97 KR--KT-TKIKL---KGIKFRADQVLKNEI 120 >gi|209522053|ref|ZP_03270709.1| histone family protein DNA-binding protein [Burkholderia sp. H160] gi|209497516|gb|EDZ97715.1| histone family protein DNA-binding protein [Burkholderia sp. H160] Length = 150 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58 T T++ L I++ + K + + L + I + +G +S V+ Sbjct: 51 TFTKASLAAHIAERAAVEPKTAKAVLAALEDTILGTVHKKGAGEFTLSGLLKIVVQAVPA 110 Query: 59 KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 K R G++ T +E + + +A LK Sbjct: 111 KKKRFGKDPFTGEERWFPAKPASVRIKARALKKLKDA 147 >gi|85707162|ref|ZP_01038249.1| DNA-binding protein HU, putative [Roseovarius sp. 217] gi|85668321|gb|EAQ23195.1| DNA-binding protein HU, putative [Roseovarius sp. 217] Length = 173 Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats. Identities = 4/52 (7%), Positives = 20/52 (38%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 + +L+ + + + +K + V + + ++ G + + + + Sbjct: 77 KQELIDKVLGKGDIKKKYAKPVVEAVLEVLGEALAEGRELNLPPMGKIKINR 128 >gi|330988480|gb|EGH86583.1| single-stranded binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 48 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 18/47 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50 +T+ LV I++ + + + + L + D G I + Sbjct: 2 ALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPG 48 >gi|304384483|ref|ZP_07366878.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304334426|gb|EFM00724.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 138 Score = 38.4 bits (89), Expect = 0.34, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 10/92 (10%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 D+ I+ E L+ ++ + + + + + G ++++ S+ +FH+ Sbjct: 36 DVAIEIADETTLNPHEARMSIEQMKKVLIRNLLNGHSVRLGSWGSFHLTISSK-----PS 90 Query: 69 TNQEVKIDPRRVVV----FKASSILKKRIMDD 96 ++ + D +V F LK+ I Sbjct: 91 ATEK-EADASKVTKINIRFTPGKELKEAIAKA 121 >gi|270296294|ref|ZP_06202494.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273698|gb|EFA19560.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 206 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TI R + ++ + GLSR + +E+ D G +++ F +R Sbjct: 31 TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYFTPSLSCTRQ 90 Query: 64 GRNLQTNQEVKIDPR---RVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 T+++ R + F+ K + M+ +C ++P+ S Sbjct: 91 A----TDKKELRAASIALRGLNFRLGREFYKDLKGKMQLERC-PQSTSAPASS 138 >gi|42560762|ref|NP_975213.1| hypothetical protein MSC_0210 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492258|emb|CAE76855.1| Hypothetical protein MSC_0210 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320967|gb|ADK69610.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 43 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 6/28 (21%), Positives = 15/28 (53%) Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMD 95 +T +++ I + FK + LK+ + + Sbjct: 15 KTGEQIIIPASKTAKFKPAKKLKELLTE 42 >gi|53714063|ref|YP_100055.1| hypothetical protein BF2771 [Bacteroides fragilis YCH46] gi|60682257|ref|YP_212401.1| hypothetical protein BF2786 [Bacteroides fragilis NCTC 9343] gi|253564705|ref|ZP_04842161.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265766318|ref|ZP_06094359.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52216928|dbj|BAD49521.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60493691|emb|CAH08480.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251946170|gb|EES86547.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253986|gb|EEZ25451.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163735|emb|CBW23289.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 150 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGSRVGRNLQTNQEVKIDPRRV 80 D + L +E+ D RGE +++ + TF V + +G+ + + I RV Sbjct: 52 ADVVAVLKALEDEMVDGLSRGEIVRLGNIGTFQVGLRSRGAEKAEDFK---AANISKARV 108 Query: 81 VVFKASSILKKRIM 94 F+ +L + Sbjct: 109 -NFRPGPVLADAMK 121 >gi|112253267|gb|ABI14221.1| major basic nuclear protein [Pfiesteria piscicida] Length = 112 Score = 38.4 bits (89), Expect = 0.35, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K+IT+ L +IS E L + D ++ +T L + + + I A + K + Sbjct: 17 GKSITKGGLADAISGETELKKSDCSKVLTALAEVVAKEVKKTGKVIIPGIARIVTRTKPA 76 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + G+ + V + R VV + +K+ + Sbjct: 77 TKAGKREMFGKVVVVKARPARTVVKAFPVAAIKQAV 112 >gi|260172975|ref|ZP_05759387.1| hypothetical protein BacD2_13983 [Bacteroides sp. D2] gi|315921254|ref|ZP_07917494.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695129|gb|EFS31964.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 220 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + D G+++ + F +K + + Sbjct: 37 LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA + LK+ + Sbjct: 97 KAN-QIKLKANISFKADAKLKRSV 119 >gi|317477782|ref|ZP_07936974.1| hypothetical protein HMPREF1007_00090 [Bacteroides sp. 4_1_36] gi|316906054|gb|EFV27816.1| hypothetical protein HMPREF1007_00090 [Bacteroides sp. 4_1_36] Length = 207 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 11/90 (12%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKGSRV 63 +L + I + L+ D + + L + + + G + + F + + Sbjct: 37 ELRRRIQERSSLTETDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFHPVLTSTEPVTAAT 96 Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 R +T ++K+ + + F+A +LK I Sbjct: 97 KR--KT-TKIKL---KGIKFRADQVLKNEI 120 >gi|294674259|ref|YP_003574875.1| histone-like DNA-binding protein [Prevotella ruminicola 23] gi|294471618|gb|ADE81007.1| histone-like DNA-binding protein [Prevotella ruminicola 23] Length = 190 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I + L R D + L + G+ I++S F V Sbjct: 37 EIADFIQTQATLKRSDIKAALDELGAAMKHFLEMGQKIRLSGIGIFKV 84 >gi|282877508|ref|ZP_06286327.1| putative DNA-binding protein [Prevotella buccalis ATCC 35310] gi|281300394|gb|EFA92744.1| putative DNA-binding protein [Prevotella buccalis ATCC 35310] Length = 160 Score = 38.4 bits (89), Expect = 0.36, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGS 61 L + I + + R D + L + D + +K++ F +F + + K + Sbjct: 36 LAERIQRNCTVKRSDVVAVLAELVEVMQDELQQSRVVKLNGFGSFKIGLRTKPA 89 >gi|209980428|gb|ACJ04919.1| major basic nuclear protein variant [Amphidinium carterae] Length = 85 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +K +T++++ K ++++ G +RK V L + + + K++ +K K + Sbjct: 13 AKVMTQTEVYKIVAEKTGFARKQVKGAVDALMELSAEQVKKAGSFKVAGMLNMKLKSKPA 72 Query: 62 RVGR 65 R Sbjct: 73 TKAR 76 >gi|53711606|ref|YP_097598.1| hypothetical protein BF0315 [Bacteroides fragilis YCH46] gi|60679856|ref|YP_210000.1| hypothetical protein BF0263 [Bacteroides fragilis NCTC 9343] gi|253564343|ref|ZP_04841800.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764990|ref|ZP_06093265.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52214471|dbj|BAD47064.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60491290|emb|CAH06038.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251948119|gb|EES88401.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254374|gb|EEZ25808.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161376|emb|CBW20916.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 166 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 17/52 (32%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 K + + +++ L D +T L + I G + I F Sbjct: 32 KPVNSVQIANQLAERSSLQNGDVLSALTQLSDIIAAHLKEGRTVSIDGLGNF 83 >gi|212550286|ref|YP_002308607.1| hypothetical protein CFPG_P2-27 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549419|dbj|BAG84085.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 140 Score = 38.4 bits (89), Expect = 0.38, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51 + D+++S S+ G SR+ E+ ++ + G+ + + F Sbjct: 6 MNAGDIIRSASRASGYSRRVVKEVFQQCIEEMKETLLSGKRVSLKDF 52 >gi|293372729|ref|ZP_06619110.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292632238|gb|EFF50835.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 169 Score = 38.4 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 7/45 (15%), Positives = 19/45 (42%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++I++ L+ D + L + + + +K+ TF + Sbjct: 38 ETIAERSSLTAGDVHNVIRNLMAVMREQLLNSRTVKLEGLGTFTL 82 >gi|265751985|ref|ZP_06087778.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236777|gb|EEZ22247.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 130 Score = 38.4 bits (89), Expect = 0.39, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 26 TRFVTTLFNEICDSAVRGEAIKISSFATFHVKQK 59 + +FN + + +G+ + + TF V K Sbjct: 53 EAVLEEVFNRLSEHLAQGDQVTLDGLGTFSVSLK 86 >gi|298479891|ref|ZP_06998090.1| DNA-binding protein [Bacteroides sp. D22] gi|298273700|gb|EFI15262.1| DNA-binding protein [Bacteroides sp. D22] Length = 212 Score = 38.4 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + D G+++ + F +K + + Sbjct: 37 LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA + LK+ + Sbjct: 97 KAN-QIKLKANISFKADAKLKRSV 119 >gi|224536984|ref|ZP_03677523.1| hypothetical protein BACCELL_01860 [Bacteroides cellulosilyticus DSM 14838] gi|224521390|gb|EEF90495.1| hypothetical protein BACCELL_01860 [Bacteroides cellulosilyticus DSM 14838] Length = 212 Score = 38.4 bits (89), Expect = 0.40, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 9/87 (10%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF----HVKQKGSRVGRNLQ 68 + + LS D+ + TL + G + I F QK +R +N Sbjct: 40 RVHERSSLSVGDAKSAIDTLTQLCGEELREGREVHIEGLGYFSPTLEATQKVTRKTKNKH 99 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMD 95 + + V F+ LK + Sbjct: 100 LKLRL-----KGVSFRPDIRLKAALAG 121 >gi|212551046|ref|YP_002309363.1| hypothetical protein CFPG_689 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549284|dbj|BAG83952.1| hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 140 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51 + D+++S S+ G SR+ E+ ++ + G+ + + F Sbjct: 6 MNAGDIIRSASRASGYSRRVVKEVFQQCIEEMKETLLSGKRVSLKDF 52 >gi|160887844|ref|ZP_02068847.1| hypothetical protein BACUNI_00247 [Bacteroides uniformis ATCC 8492] gi|270295548|ref|ZP_06201749.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862674|gb|EDO56105.1| hypothetical protein BACUNI_00247 [Bacteroides uniformis ATCC 8492] gi|270274795|gb|EFA20656.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 207 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 17/93 (18%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 +L + I L+ D T + + + + G + + F V Sbjct: 37 ELRRDIQARCSLTETDVTAVLDAVSHVMGRELAEGRQVHLDGIGYFRVSLT--------- 87 Query: 69 TNQEVKIDPRRV--------VVFKASSILKKRI 93 T + V +R V F+A LK I Sbjct: 88 TIEPVVAATKRKLTKVKMAGVKFRADQKLKNEI 120 >gi|160884009|ref|ZP_02065012.1| hypothetical protein BACOVA_01983 [Bacteroides ovatus ATCC 8483] gi|293371569|ref|ZP_06617987.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|156110739|gb|EDO12484.1| hypothetical protein BACOVA_01983 [Bacteroides ovatus ATCC 8483] gi|292633517|gb|EFF52082.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 203 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + + K G+SR + + NE+ D G +++ F V KG RV + Sbjct: 36 EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92 Query: 69 TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98 ++V I+ + V F+ S KK + MR Sbjct: 93 -KKDVHAQSIELKNV-NFRVGSQFKKEVGQQMR 123 >gi|329965124|ref|ZP_08302093.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328523952|gb|EGF51030.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 212 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T T+ + V+ +S L + + +E+CD G +++ F K R Sbjct: 30 RTYTQKEFVEHVSTFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLR 89 Query: 63 V 63 Sbjct: 90 E 90 >gi|295085683|emb|CBK67206.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 212 Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + D G+++ + F +K + + Sbjct: 37 LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA + LK+ + Sbjct: 97 KAN-QIKLKANISFKADAKLKRSV 119 >gi|298479776|ref|ZP_06997976.1| conserved hypothetical protein [Bacteroides sp. D22] gi|298274166|gb|EFI15727.1| conserved hypothetical protein [Bacteroides sp. D22] Length = 199 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 24/106 (22%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------V 56 T+ + + + + K G+SR + NE D G +++ +F F V Sbjct: 30 TVDKEEFLDRVHKFTGISRSLLAGAMEAFANEARDLLADGWNVEMGNFGFFSTSLQCPPV 89 Query: 57 KQKGSRVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMR 98 K K I V + F+AS KK + + MR Sbjct: 90 KDKKE-------------IRAASVQMKNINFRASRPFKKEVGNKMR 122 >gi|189464134|ref|ZP_03012919.1| hypothetical protein BACINT_00470 [Bacteroides intestinalis DSM 17393] gi|189437924|gb|EDV06909.1| hypothetical protein BACINT_00470 [Bacteroides intestinalis DSM 17393] Length = 170 Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 L + I + G+S +D + + + G+++K+ F F Sbjct: 40 LSQEIEEMGGMSAEDVEHVMKAIVRNLKRKLTDGDSVKLDGFGVF 84 >gi|237721894|ref|ZP_04552375.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448763|gb|EEO54554.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 212 Score = 38.0 bits (88), Expect = 0.43, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + D G+++ + F +K + + Sbjct: 37 LAKEIQIATSLTEGDVKSVLESLSHFMGDRLREGQSVHLDGIGYFQIKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA + LK+ + Sbjct: 97 KAN-QIKLKANISFKADAKLKRSV 119 >gi|255689856|ref|ZP_05413531.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260624460|gb|EEX47331.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 216 Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L K I L+ D + +L + + GE++ + F VK + + Sbjct: 37 LAKEIQMATSLTEGDVKSVLESLSHFMGYRLREGESVHLDGIGYFQVKLNSQEPITSPKL 96 Query: 70 NQEVKIDPRRVVVFKASSILKKRI 93 +I + + FKA + LK+ + Sbjct: 97 KAN-QIKLKANICFKADAKLKRSV 119 >gi|112253259|gb|ABI14217.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253271|gb|ABI14223.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253279|gb|ABI14227.1| major basic nuclear protein [Pfiesteria piscicida] Length = 108 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK+IT+ L ++IS L + D ++ ++ L + + + + A + K + Sbjct: 13 SKSITKGGLAEAISGSTELKKSDCSKVLSALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + G+ + V++ + VV + +K+ + Sbjct: 73 TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108 >gi|237720494|ref|ZP_04550975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299147015|ref|ZP_07040082.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|229450245|gb|EEO56036.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298514900|gb|EFI38782.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 203 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + + K G+SR + + NE+ D G +++ F V KG RV + Sbjct: 36 EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92 Query: 69 TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98 ++V I+ + V F+ S KK + MR Sbjct: 93 -KKDVHAQSIELKNV-NFRVGSQFKKEVGQQMR 123 >gi|237713716|ref|ZP_04544197.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409378|ref|ZP_06085921.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644919|ref|ZP_06722655.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294808816|ref|ZP_06767546.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229446163|gb|EEO51954.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352830|gb|EEZ01927.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639732|gb|EFF58014.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294443988|gb|EFG12725.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 169 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 18/43 (41%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++I++ L+ D + L + + + +K+ TF Sbjct: 38 ETIAERSSLTAGDVHNVIRNLMAVMREQLLNSRTVKLEGLGTF 80 >gi|112253697|gb|ABI14433.1| major basic nucleic protein [Karlodinium micrum] Length = 76 Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDMLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPA 72 >gi|189467113|ref|ZP_03015898.1| hypothetical protein BACINT_03497 [Bacteroides intestinalis DSM 17393] gi|189435377|gb|EDV04362.1| hypothetical protein BACINT_03497 [Bacteroides intestinalis DSM 17393] Length = 211 Score = 38.0 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 17/89 (19%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------HVKQKGSRVG 64 I + L+ D + + L + + + G + + F +K+ R Sbjct: 41 KIQERCSLTETDVSAVLDALSHAMGEELAEGRQVHLDGIGYFHPTLTCTEEIKEDTKRK- 99 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T + + + F+A L+ I Sbjct: 100 ---NTKVRL-----KGIKFRADQDLRSEI 120 >gi|282859774|ref|ZP_06268868.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010] gi|282587394|gb|EFB92605.1| putative DNA-binding protein [Prevotella bivia JCVIHMP010] Length = 152 Score = 38.0 bits (88), Expect = 0.46, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 L IS ++ D ++ L E+ + G+ + +S +F + Sbjct: 30 LAGRISNTCTVTESDILAVISALVTEMGYALKDGKRVVLSGLGSFKAGFRS 80 >gi|212550354|ref|YP_002308672.1| hypothetical protein CFPG_P1-35 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549389|dbj|BAG84056.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 140 Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 22/47 (46%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51 + D+++S S+ G SR+ E+ ++ + G+ + + F Sbjct: 6 MNAGDIIRSASRASGYSRRVVKDVFQQCIEEMKETLLSGKRVSLKDF 52 >gi|241762983|ref|ZP_04761045.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] gi|241367935|gb|EER62154.1| histone family protein DNA-binding protein [Acidovorax delafieldii 2AN] Length = 131 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSF---ATFHVKQ 58 T T+ L +++ G+ K + L + + +G + V Sbjct: 33 TFTKGALTNHLAELAGVEPKAVKAVLAALETTVLGAVNKKGAGEFTLPGLLKIGVQKVPA 92 Query: 59 KGSRVGRNLQTNQE---VKIDPRRVVVFKASSILKKR 92 K R G N T +E + +A LK Sbjct: 93 KPKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 129 >gi|218130676|ref|ZP_03459480.1| hypothetical protein BACEGG_02265 [Bacteroides eggerthii DSM 20697] gi|217987020|gb|EEC53351.1| hypothetical protein BACEGG_02265 [Bacteroides eggerthii DSM 20697] Length = 299 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T T+ + V+ +S L + + +E+CD G +++ F K R Sbjct: 118 TYTQKEFVEHVSTFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLRE 177 >gi|112253691|gb|ABI14430.1| major basic nucleic protein [Karlodinium micrum] gi|112253693|gb|ABI14431.1| major basic nucleic protein [Karlodinium micrum] gi|112253695|gb|ABI14432.1| major basic nucleic protein [Karlodinium micrum] Length = 76 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K +T+ L K+++ E GL +K + + +L + + I + K + Sbjct: 14 KAMTKGALAKALATEHGLKQKACSDMLNSLASIATKEVKKAGIFSIPGLCRIKTRTKPA 72 >gi|91779334|ref|YP_554542.1| Bph2 [Burkholderia xenovorans LB400] gi|296157052|ref|ZP_06839889.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] gi|91691994|gb|ABE35192.1| DNA-binding protein BpH2 [Burkholderia xenovorans LB400] gi|295892938|gb|EFG72719.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1] Length = 150 Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58 T T++ L +++ + K + + L + I + +G +S V+ Sbjct: 51 TFTKASLAAHVAERAAVEPKTAKAVLAALEDTILGAVHKKGAGEFTLSGLLKIVVQAVPA 110 Query: 59 KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 K R G++ + +E + + + LK Sbjct: 111 KKKRFGKDPFSGEERWFPAKPASVRIKARPLKKLKDA 147 >gi|258647833|ref|ZP_05735302.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260851655|gb|EEX71524.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +V I K G+S + L EI ++ G ++++ +FH+ Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILETLADGNSVRLGDLGSFHLTMHAE 86 >gi|187919157|ref|YP_001888188.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] gi|187717595|gb|ACD18818.1| histone family protein DNA-binding protein [Burkholderia phytofirmans PsJN] Length = 150 Score = 38.0 bits (88), Expect = 0.49, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 8/97 (8%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFHVK---Q 58 T T++ L +++ + K + + L + I + +G +S V+ Sbjct: 51 TFTKASLAAHVAERAAVEPKTAKAVLAALEDTILGAVHKKGAGEFTLSGLLKIVVQAVPA 110 Query: 59 KGSRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 K R G++ + +E + + + LK Sbjct: 111 KKKRFGKDPFSGEERWFPAKPASVRIKARPLKKLKDA 147 >gi|325270481|ref|ZP_08137083.1| hypothetical protein HMPREF9141_2293 [Prevotella multiformis DSM 16608] gi|324987204|gb|EGC19185.1| hypothetical protein HMPREF9141_2293 [Prevotella multiformis DSM 16608] Length = 179 Score = 38.0 bits (88), Expect = 0.51, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L + I ++ D ++ L E+ G +KI TF V Sbjct: 34 KELAQRIGNRCTVTEPDILAVISALVFEMNQVLKAGSRVKIDGLGTFRV 82 >gi|167764502|ref|ZP_02436623.1| hypothetical protein BACSTE_02891 [Bacteroides stercoris ATCC 43183] gi|167697171|gb|EDS13750.1| hypothetical protein BACSTE_02891 [Bacteroides stercoris ATCC 43183] Length = 112 Score = 38.0 bits (88), Expect = 0.52, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 16/34 (47%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 +++ D + L EI + G+ +K++ T Sbjct: 1 MTKGDVKHVIEALVEEIQANLANGDKVKLNQLGT 34 >gi|317064577|ref|ZP_07929062.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690253|gb|EFS27088.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 100 Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + + V ++ I ++ ++ + + F K+ R + P+ VV F+ Sbjct: 24 AKKKVRLIWESIYEAIDTEGSLTLLNMGMFEKKELRPRKIYIPVNGKMSVSKPKTVVKFR 83 Query: 85 ASSILKKRIMDDMRGRK 101 A K + + + Sbjct: 84 AGKGWVKMVNESGENNE 100 >gi|212691193|ref|ZP_03299321.1| hypothetical protein BACDOR_00684 [Bacteroides dorei DSM 17855] gi|212666425|gb|EEB26997.1| hypothetical protein BACDOR_00684 [Bacteroides dorei DSM 17855] Length = 234 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 56 ETITTDHIVKELSKHSAYSVGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 115 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ D Sbjct: 116 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQDT 148 >gi|237712358|ref|ZP_04542839.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237726491|ref|ZP_04556972.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229435017|gb|EEO45094.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229453679|gb|EEO59400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 234 Score = 37.6 bits (87), Expect = 0.56, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 56 ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 115 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ D Sbjct: 116 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQDT 148 >gi|257470368|ref|ZP_05634459.1| hypothetical protein FulcA4_13572 [Fusobacterium ulcerans ATCC 49185] Length = 98 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 + + V ++ I ++ ++ + + F K+ R + P+ VV F+ Sbjct: 22 AKKKVRLIWESIYEAIDTEGSLTLLNMGMFEKKELRPRKIYIPVNGKMSVSKPKTVVKFR 81 Query: 85 ASSILKKRIMDDMRGRK 101 A K + + + Sbjct: 82 AGKGWVKMVNESGENNE 98 >gi|325856570|ref|ZP_08172237.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] gi|325483418|gb|EGC86392.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] Length = 177 Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L IS ++ D ++ L E+ G +KI TF V Sbjct: 28 KELALRISNRCTVTEPDILAVISALVFEMNQVLKSGSRVKIDGLGTFRV 76 >gi|112253261|gb|ABI14218.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253265|gb|ABI14220.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253273|gb|ABI14224.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253275|gb|ABI14225.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253285|gb|ABI14230.1| major basic nuclear protein [Pfiesteria piscicida] Length = 108 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK+IT+ L ++IS L + D ++ +T L + + + + A + K + Sbjct: 13 SKSITKGGLAEAISGSTELKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + G+ + V++ + VV + +K+ + Sbjct: 73 TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108 >gi|317475810|ref|ZP_07935067.1| hypothetical protein HMPREF1016_02049 [Bacteroides eggerthii 1_2_48FAA] gi|316907970|gb|EFV29667.1| hypothetical protein HMPREF1016_02049 [Bacteroides eggerthii 1_2_48FAA] Length = 205 Score = 37.6 bits (87), Expect = 0.59, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 19/115 (16%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------H 55 TI R + + + G+SR + +E+ D G +++ F Sbjct: 31 TIERKEFINRVHLFTGISRSLLEGAMAGFMDELRDCLANGWTVELGELGYFTPSLNCRRE 90 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 V +K R V + R + F+ + + + + + S Sbjct: 91 VMEKKELRSA-------SVTL---RGLNFRLGKEFYNELNEKIHLERSPQSATAS 135 >gi|268317076|ref|YP_003290795.1| Sporulation domain-containing protein [Rhodothermus marinus DSM 4252] gi|262334610|gb|ACY48407.1| Sporulation domain protein [Rhodothermus marinus DSM 4252] Length = 361 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 3/45 (6%), Positives = 16/45 (35%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52 + L++ +++ G + + + + + I + + Sbjct: 3 ASLIQQLAERLGCTPEAAEAALRQYIDRIQKQLAQEGQAILPGLG 47 >gi|237715571|ref|ZP_04546052.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262408580|ref|ZP_06085126.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647537|ref|ZP_06725117.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806023|ref|ZP_06764884.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298481416|ref|ZP_06999608.1| DNA-binding protein [Bacteroides sp. D22] gi|229444280|gb|EEO50071.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262353445|gb|EEZ02539.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637149|gb|EFF55587.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446771|gb|EFG15377.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295086830|emb|CBK68353.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A] gi|298272280|gb|EFI13849.1| DNA-binding protein [Bacteroides sp. D22] Length = 203 Score = 37.6 bits (87), Expect = 0.60, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 16/93 (17%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L I + + + +L + + GE + + F V LQT Sbjct: 37 LAAEIHRATTFGEAEVEGVLMSLSHFMSSHLKNGERVHLKGIGYFQVT---------LQT 87 Query: 70 NQEV-KIDPR------RVVVFKASSILKKRIMD 95 + V + R + + F+A LK + D Sbjct: 88 TEPVYDVKTRSDKVSFKAIRFQADKELKGELYD 120 >gi|112253293|gb|ABI14234.1| major basic nuclear protein [Pfiesteria piscicida] Length = 108 Score = 37.6 bits (87), Expect = 0.61, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK+IT+ L ++IS L + D ++ +T L + + + + A + K + Sbjct: 13 SKSITKGGLAEAISGSTELKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + G+ + V++ + VV + +K+ + Sbjct: 73 TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108 >gi|307566098|ref|ZP_07628556.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A] gi|307345286|gb|EFN90665.1| putative DNA-binding protein [Prevotella amnii CRIS 21A-A] Length = 160 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 L IS ++ D ++ L E+ + G+ + I+ +F + Sbjct: 30 LAGRISNTCTVTESDILAVISALVTEMSYALKDGKRVLINGLGSFKASFRS 80 >gi|265752067|ref|ZP_06087860.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236859|gb|EEZ22329.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 207 Score = 37.6 bits (87), Expect = 0.62, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 29 ETITTDHIVKELSKHSAYSVGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 88 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ D Sbjct: 89 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQDT 121 >gi|327314188|ref|YP_004329625.1| putative DNA-binding protein [Prevotella denticola F0289] gi|326945353|gb|AEA21238.1| putative DNA-binding protein [Prevotella denticola F0289] Length = 177 Score = 37.6 bits (87), Expect = 0.63, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L IS ++ D ++ L E+ G +KI TF V Sbjct: 28 KELALRISNRCTVTEPDILAVISALVFEMNQVLKSGSRVKIDGLGTFRV 76 >gi|317504389|ref|ZP_07962373.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315664511|gb|EFV04194.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 149 Score = 37.6 bits (87), Expect = 0.65, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 D+ I + + + D +T L + + +K+ F TF + Sbjct: 35 DISAIIERNCSMKKSDVKAVLTELVEVMTMQIQDSKRVKLDGFGTFKI 82 >gi|298373791|ref|ZP_06983780.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274843|gb|EFI16395.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] Length = 461 Score = 37.6 bits (87), Expect = 0.66, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 11/100 (11%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--- 57 M +T+T+ D++ ++S++ + + F++ L + + + + I I TF + Sbjct: 1 MKETVTKQDIISNLSQKLDMPEEQVGIFISKLNDLLLKNLPTNKEITIDGVGTFSLVWST 60 Query: 58 -QKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 K +++ + + + F+ + LK + + Sbjct: 61 YHKNTKL----KDGEP---REFYKLKFEPAESLKSTVNQE 93 >gi|317474200|ref|ZP_07933476.1| hypothetical protein HMPREF1016_00455 [Bacteroides eggerthii 1_2_48FAA] gi|316909510|gb|EFV31188.1| hypothetical protein HMPREF1016_00455 [Bacteroides eggerthii 1_2_48FAA] Length = 212 Score = 37.6 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 T T+ + V+ +S L + + +E+CD G +++ F K R Sbjct: 31 TYTQKEFVEHVSTFQHLPKNVIGAALDACIDELCDLLANGNIVELGELGFFSTSLKCLRE 90 >gi|224540165|ref|ZP_03680704.1| hypothetical protein BACCELL_05078 [Bacteroides cellulosilyticus DSM 14838] gi|224518199|gb|EEF87304.1| hypothetical protein BACCELL_05078 [Bacteroides cellulosilyticus DSM 14838] Length = 179 Score = 37.6 bits (87), Expect = 0.67, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +L + ++ + SR D T + + D GE + F Sbjct: 35 KELSRRVAAQTTASRADVTAVIIATVENMIDGLRAGEQVDFGDLGKF 81 >gi|331001787|ref|ZP_08325309.1| 5-formyltetrahydrofolate cyclo-ligase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412761|gb|EGG92144.1| 5-formyltetrahydrofolate cyclo-ligase [Lachnospiraceae oral taxon 107 str. F0167] Length = 189 Score = 37.6 bits (87), Expect = 0.68, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSF 51 + + +L K + ++ LSR + ++ EI + + I I F Sbjct: 1 MNKPELRKELLEKRNSLSRTEVLAASESIIKEIENLIKKTGKITILGF 48 >gi|157325091|ref|YP_001468516.1| gp136 [Listeria phage A511] gi|66732779|gb|AAY53370.1| gp67 [Listeria phage P100] gi|66733099|gb|AAY52917.1| gp136 [Listeria phage A511] Length = 104 Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 4/105 (3%) Query: 1 MSKTI-TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHVKQ 58 M K + R+D+ + +++ G KD + + I D+ G IK V+ Sbjct: 1 MPKKMINRTDIAREVAQRTGFYIKDVEQILAERDTVIIDALQGGVTKIKEHKLYQIEVET 60 Query: 59 KGSRV-GRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKC 102 K ++ N I ++++ FK + + ++D + ++ Sbjct: 61 KPAKKNAWNGLDKVYFSIPEKKIIKFKPLVAV-EEVIDSLNKKET 104 >gi|224535815|ref|ZP_03676354.1| hypothetical protein BACCELL_00679 [Bacteroides cellulosilyticus DSM 14838] gi|224522538|gb|EEF91643.1| hypothetical protein BACCELL_00679 [Bacteroides cellulosilyticus DSM 14838] Length = 169 Score = 37.2 bits (86), Expect = 0.71, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +T+ + + + + LS D + ++ + + G+ + I+ F + K Sbjct: 30 LGQTVDLAFIAQKMQDRSSLSIGDIKSTMQNFVEKLKEQLLEGKTVNIAGLGVFLLAAKS 89 Query: 61 SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90 +E + + V + F+A+ LK Sbjct: 90 K--------GEEKAEDVTAKSVDSVRIFFQANKELK 117 >gi|295086144|emb|CBK67667.1| hypothetical protein [Bacteroides xylanisolvens XB1A] Length = 203 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + + K G+SR + + NE+ D G +++ F V KG RV + Sbjct: 36 EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92 Query: 69 TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98 ++V I+ + V F+ SS KK + MR Sbjct: 93 -KKDVHAQSIELKNV-NFRVSSQFKKEVGQQMR 123 >gi|298480466|ref|ZP_06998663.1| DNA-binding protein [Bacteroides sp. D22] gi|298273287|gb|EFI14851.1| DNA-binding protein [Bacteroides sp. D22] Length = 203 Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + + K G+SR + + NE+ D G +++ F V KG RV + Sbjct: 36 EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92 Query: 69 TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98 ++V I+ + V F+ SS KK + MR Sbjct: 93 -KKDVHAQSIELKNV-NFRVSSQFKKEVGQQMR 123 >gi|283781927|ref|YP_003372682.1| DNA-binding protein [Pirellula staleyi DSM 6068] gi|283440380|gb|ADB18822.1| DNA-binding protein [Pirellula staleyi DSM 6068] Length = 107 Score = 37.2 bits (86), Expect = 0.74, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA--IKISSFATFHVKQ---KGS 61 +S+++ +I+ GL++K T L EI + + +I K K + Sbjct: 12 KSEVMANIATATGLTKKQITTVFEALTAEIGKALGKKGPGAFQIPGLCKIVRKHVPAKKA 71 Query: 62 RVGR-NLQTNQ---EVKIDPRRVVVFKASSILKKRI 93 + G N T + V +A LK + Sbjct: 72 QKGVLNRLTGKVEDRPAKPASTTVRVRALKSLKSMV 107 >gi|329960119|ref|ZP_08298583.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328533071|gb|EGF59844.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 202 Score = 37.2 bits (86), Expect = 0.75, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 11/95 (11%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-VGRN 66 +L+ +K G + D + +LF+ + RG +++ F F K SR V +N Sbjct: 35 KELLDLTAKFSGFRKGDIEGVLISLFDTVTHLINRGFRVELGEFGYFTGKVTSSRLVEKN 94 Query: 67 LQTNQEVKIDPRRV----VVFKASSILKKRIMDDM 97 I + V V F+ S+ KK + + Sbjct: 95 ------TDIHAQSVKFNNVNFRPSATFKKALDGKL 123 >gi|84684913|ref|ZP_01012813.1| DNA-binding protein HU, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667248|gb|EAQ13718.1| DNA-binding protein HU, putative [Rhodobacterales bacterium HTCC2654] Length = 141 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 22/54 (40%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + DL+ + G+ + V L E+ + E +++ T V+++ Sbjct: 58 KKDLIDRVIARSGVKPRYVRPVVDALLVELGEMLEEAETMQLQPLGTVKVQRRK 111 >gi|260893224|ref|YP_003239321.1| hypothetical protein Adeg_1369 [Ammonifex degensii KC4] gi|260865365|gb|ACX52471.1| hypothetical protein Adeg_1369 [Ammonifex degensii KC4] Length = 89 Score = 37.2 bits (86), Expect = 0.76, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 17/103 (16%) Query: 5 ITRSDLVKSISKEFGLSRKDSTR-FVTTLFNEICDSAVRGEAIKISSFATFHVKQK--GS 61 + ++L + +++ G +KD + + + VR +K+ F++ + Sbjct: 1 MKTAELCRLAAEKGGFWKKDVREFLLQHFPAALAEGLVRDGKVKLKGVGVFYLAKPPGKK 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNK 104 R G V F+ SS+L +++ + + + Sbjct: 61 RKGV--------------YVRFRPSSLLLRKLNGEGKRDESGS 89 >gi|317480527|ref|ZP_07939619.1| hypothetical protein HMPREF1007_02736 [Bacteroides sp. 4_1_36] gi|316903319|gb|EFV25181.1| hypothetical protein HMPREF1007_02736 [Bacteroides sp. 4_1_36] Length = 206 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 TI R + ++ + GLSR + +E+ D G +++ F Sbjct: 31 TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYF 81 >gi|293373995|ref|ZP_06620335.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292631036|gb|EFF49674.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 172 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + L K I+ LS D + L + E++ + TF + G Sbjct: 35 AQLSKEIAAYSSLSPGDVKNTLDNLVTVMGQHLQSSESVSVDGLGTFRMVMVARGKGV-- 92 Query: 68 QTNQEVKID-PRRVVVFKA 85 +T+ EV V F+ Sbjct: 93 ETSDEVSAAQATLTVRFQP 111 >gi|237722105|ref|ZP_04552586.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298483275|ref|ZP_07001454.1| non-specific DNA-binding protein [Bacteroides sp. D22] gi|299145165|ref|ZP_07038233.1| putative non-specific DNA-binding protein [Bacteroides sp. 3_1_23] gi|229448974|gb|EEO54765.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298270592|gb|EFI12174.1| non-specific DNA-binding protein [Bacteroides sp. D22] gi|298515656|gb|EFI39537.1| putative non-specific DNA-binding protein [Bacteroides sp. 3_1_23] Length = 172 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + L K I+ LS D + L + E++ + TF + G Sbjct: 35 AQLSKEIAAYSSLSPGDVKNTLDNLVTVMGQHLQSSESVSVDGLGTFRMVMVARGKGV-- 92 Query: 68 QTNQEVKID-PRRVVVFKA 85 +T+ EV V F+ Sbjct: 93 ETSDEVSAAQATLTVRFQP 111 >gi|41768|emb|CAA38426.1| HU-2 protein [Escherichia coli] Length = 28 Score = 37.2 bits (86), Expect = 0.77, Method: Composition-based stats. Identities = 4/27 (14%), Positives = 15/27 (55%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTT 31 + ++ L+ I+++ LS+ + + + Sbjct: 1 MNKTQLIDVIAEKAELSKTQAKAALES 27 >gi|153807016|ref|ZP_01959684.1| hypothetical protein BACCAC_01293 [Bacteroides caccae ATCC 43185] gi|149130136|gb|EDM21346.1| hypothetical protein BACCAC_01293 [Bacteroides caccae ATCC 43185] Length = 165 Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 10/87 (11%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 +S+ G+ RK V+ L +++ + G+++++ F F + +++E Sbjct: 40 KVSQLCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQLGEFGIFSPTIRTK------SSDEE 93 Query: 73 VKIDPRRVVV----FKASSILKKRIMD 95 +I + +V F I K + D Sbjct: 94 KEISSKSIVQRKILFYPGKIFKDTLAD 120 >gi|255103202|ref|ZP_05332179.1| hypothetical protein CdifQCD-6_20488 [Clostridium difficile QCD-63q42] Length = 92 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + D +K +++E G+S+ + + + + GE + + + K + + G Sbjct: 1 MKKVDFLKEVAEELGVSQIRVREILDVIEKKRNEVLQDGEELTLMGV-KYLTKIQKGKEG 59 Query: 65 ---RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T + K + +RV K + LK I Sbjct: 60 EITLKDGTKKPWKTEEKRVPKLKIAKSLKDAI 91 >gi|294678106|ref|YP_003578721.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003] gi|294476926|gb|ADE86314.1| DNA-binding protein HU-3 [Rhodobacter capsulatus SB 1003] Length = 148 Score = 37.2 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 6/50 (12%), Positives = 18/50 (36%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 + D V+ + G + + + + ++ +GE + + V Sbjct: 58 KKDFVERVVLRSGAKKPAARDLTEAVLAVLGEALAKGETLVLPPLGKISV 107 >gi|329961382|ref|ZP_08299505.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328531859|gb|EGF58682.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 216 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 TI R + ++ + GLSR + +E+ D G +++ F Sbjct: 41 TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYF 91 >gi|260172540|ref|ZP_05758952.1| hypothetical protein BacD2_11806 [Bacteroides sp. D2] gi|315920833|ref|ZP_07917073.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694708|gb|EFS31543.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 203 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + + K G+SR + + NE+ D G +++ F V KG RV + Sbjct: 36 EFLDRVHKFTGISRSLLAGAMQSFQNELRDLIANGWIVELGDIGYFSVSLKGPRVMK--- 92 Query: 69 TNQEV---KIDPRRVVVFKASSILKKRIMDDMR 98 ++V I+ + V F+ SS KK + MR Sbjct: 93 -KKDVHAQSIELKNV-NFRVSSQFKKEVGQQMR 123 >gi|256838189|ref|ZP_05543699.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262383239|ref|ZP_06076376.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301311664|ref|ZP_07217589.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|256739108|gb|EEU52432.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262296117|gb|EEY84048.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300830224|gb|EFK60869.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 144 Score = 37.2 bits (86), Expect = 0.80, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L K I LS D + +L + G +++ F F + G Sbjct: 35 LNK--LCKLICSRSTLSSADVKAVLDSLNWAMDLELSSGNVVQLGEFGNFRMSINSE--G 90 Query: 65 RN-LQTNQEVKIDPRRVVVFKASSILK 90 N + KI R++ F S L+ Sbjct: 91 TNTPEDFDATKIKGARIIFF-PGSALR 116 >gi|260910809|ref|ZP_05917458.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635074|gb|EEX53115.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 157 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV--KQKGS 61 T+ + L + + + + D + L + + +++ F TF + K K + Sbjct: 27 TVNTAALADIMQQNCTVKKSDILAVIAELVEVMKQQLQDSKNVRLDGFGTFRIGLKTKPA 86 >gi|189466691|ref|ZP_03015476.1| hypothetical protein BACINT_03066 [Bacteroides intestinalis DSM 17393] gi|189434955|gb|EDV03940.1| hypothetical protein BACINT_03066 [Bacteroides intestinalis DSM 17393] Length = 176 Score = 37.2 bits (86), Expect = 0.81, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 16/94 (17%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKGSR 62 +T +L + ++ + +SR D + + + G+ + F + + + Sbjct: 32 LTLKELGQQVASQTTVSRADVAAVIISTVENMIGGLRAGKQVDFGDLGKFRLQINSRAAD 91 Query: 63 VGR-----NLQTNQEVKIDPRRVVVFKASSILKK 91 N+ T ++ F LK Sbjct: 92 TAEKFTAANI-TGVNIQ--------FVPGEDLKD 116 >gi|90417105|ref|ZP_01225033.1| DNA-binding protein HU, putative [marine gamma proteobacterium HTCC2207] gi|90331121|gb|EAS46377.1| DNA-binding protein HU, putative [marine gamma proteobacterium HTCC2207] Length = 177 Score = 37.2 bits (86), Expect = 0.82, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 10/94 (10%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR---GEAIKISSFATFHVKQKGSR- 62 ++ ++ ++ L+RK +T L + + GE + ++ H ++ ++ Sbjct: 82 KTQIISELAANSDLTRKQVNTLLTELATLVERHVKKRSVGEFV-LAGLIKIHTVKRPAKK 140 Query: 63 --VGRNLQTNQEVKI---DPRRVVVFKASSILKK 91 G N T +E V A LK Sbjct: 141 AYTGTNPFTGKETTFKARPASVAVKVHALKGLKD 174 >gi|271970198|ref|YP_003344394.1| hypothetical protein Sros_9020 [Streptosporangium roseum DSM 43021] gi|270513373|gb|ACZ91651.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 124 Score = 37.2 bits (86), Expect = 0.83, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45 + V+++++ GLSR+++ + D GEA Sbjct: 4 KEFVQTVAERAGLSREEAADLTRATLGALGDRLSAGEA 41 >gi|303237931|ref|ZP_07324483.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] gi|302481896|gb|EFL44939.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] Length = 160 Score = 37.2 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 19/55 (34%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 S T+ +DL + I + + D + L + + + F F + Sbjct: 28 SGTVHTTDLAEVIQRNCTCKKSDVLAVLAELVEVMQTELQNSHRVHLDGFGAFKI 82 >gi|237718946|ref|ZP_04549427.1| DNA-binding protein [Bacteroides sp. 2_2_4] gi|229451724|gb|EEO57515.1| DNA-binding protein [Bacteroides sp. 2_2_4] Length = 151 Score = 37.2 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT L I LSR D +T L + + + G + +++ +F V G RV Sbjct: 32 ITTKQLEDRIVNATALSRADVRSAITALAKIVREEMLSGRTVDLANLGSFKVVSNGKRV 90 >gi|160892100|ref|ZP_02073103.1| hypothetical protein BACUNI_04563 [Bacteroides uniformis ATCC 8492] gi|156858578|gb|EDO52009.1| hypothetical protein BACUNI_04563 [Bacteroides uniformis ATCC 8492] Length = 205 Score = 37.2 bits (86), Expect = 0.86, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TI R + ++ + GLSR + +E+ D G +++ F +R Sbjct: 30 TIDRKEFIERVHLFTGLSRSLLEGAMAGFMDELRDCLANGWTVELGELGYFTPSLSCTRQ 89 Query: 64 GRNLQTNQEVKIDPR---RVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 T+++ R + F+ K + M+ +C + S + Sbjct: 90 A----TDKKELRAASIALRGLNFRLGREFYKDLKGKMQLERCPQSASVPASSA 138 >gi|88703422|ref|ZP_01101138.1| Transposase Tn3 [Congregibacter litoralis KT71] gi|88702136|gb|EAQ99239.1| Transposase Tn3 [Congregibacter litoralis KT71] Length = 990 Score = 37.2 bits (86), Expect = 0.88, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 +V+ +++E +++D + + E+ + ++ F+T + +R N T Sbjct: 122 IVRDLAREAATTKQDLADIINVVIEELVR-----QRFELPGFSTLQRSARQARSTVN--T 174 Query: 70 N 70 Sbjct: 175 G 175 >gi|293370928|ref|ZP_06617471.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292633997|gb|EFF52543.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 141 Score = 36.8 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT L I LSR D +T L + + + G + +++ +F V G RV Sbjct: 22 ITTKQLEDRIVNATALSRADVRSAITALAKIVREEMLSGRTVDLANLGSFKVVSNGKRV 80 >gi|237712877|ref|ZP_04543358.1| DNA-binding protein [Bacteroides sp. D1] gi|262409707|ref|ZP_06086246.1| DNA-binding protein [Bacteroides sp. 2_1_22] gi|294643518|ref|ZP_06721325.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294809390|ref|ZP_06768099.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229447101|gb|EEO52892.1| DNA-binding protein [Bacteroides sp. D1] gi|262352449|gb|EEZ01550.1| DNA-binding protein [Bacteroides sp. 2_1_22] gi|292641147|gb|EFF59358.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294443408|gb|EFG12166.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 151 Score = 36.8 bits (85), Expect = 0.89, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT L I LSR D +T L + + + G + +++ +F V G RV Sbjct: 32 ITTKQLEDRIVNATALSRADVRSAITALAKIVREEMLSGRTVDLANLGSFKVVSNGKRV 90 >gi|153808378|ref|ZP_01961046.1| hypothetical protein BACCAC_02672 [Bacteroides caccae ATCC 43185] gi|149129281|gb|EDM20497.1| hypothetical protein BACCAC_02672 [Bacteroides caccae ATCC 43185] Length = 211 Score = 36.8 bits (85), Expect = 0.92, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 17/89 (19%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + I + L+ D T + L + + G + + F + Sbjct: 38 LSRRIQERCSLTETDVTAVLDALSHIMGQELANGRQVHLDGIGYFRPCLTST-------- 89 Query: 70 NQEVKIDPRRVVV--------FKASSILK 90 + V ID +R F+A LK Sbjct: 90 -EPVTIDTKRKATKVKLKAIQFRADQTLK 117 >gi|229495486|ref|ZP_04389219.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC 35406] gi|229317469|gb|EEN83369.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC 35406] Length = 140 Score = 36.8 bits (85), Expect = 0.96, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 I K LSR D + L + + + G ++ ++ +F V G R+ Sbjct: 39 NRIIKATALSRADVRSAIAALAEIVREEILAGRSVALADLGSFRVVSTGKRMA 91 >gi|330820882|ref|YP_004349744.1| DNA-binding protein BpH [Burkholderia gladioli BSR3] gi|327372877|gb|AEA64232.1| DNA-binding protein BpH [Burkholderia gladioli BSR3] Length = 147 Score = 36.8 bits (85), Expect = 0.97, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + TL N I S +G + V K Sbjct: 51 TKASLATHIAERAEVELKTVKAVLATLENVILGSIHKKGAGEFTLPGLLKISAQAVAAKK 110 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 111 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145 >gi|224535687|ref|ZP_03676226.1| hypothetical protein BACCELL_00551 [Bacteroides cellulosilyticus DSM 14838] gi|224522697|gb|EEF91802.1| hypothetical protein BACCELL_00551 [Bacteroides cellulosilyticus DSM 14838] Length = 168 Score = 36.8 bits (85), Expect = 0.99, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 16/101 (15%) Query: 16 KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH-------VKQKGSRVGRNLQ 68 ++ L+ D +T + D G+++ I F F V++K +N++ Sbjct: 44 EKSSLTLGDIKSVITNFVEALIDKLYGGQSVNIKDFGVFSLSARTVGVEKKEDCTAKNIK 103 Query: 69 TNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 VKI F+ S+ ++ + G+K + D+ + Sbjct: 104 ---AVKI------NFRPSTTIRPDVTATRAGQKIDFYDLEA 135 >gi|254881496|ref|ZP_05254206.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254834289|gb|EET14598.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 234 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 56 ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 115 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ + Sbjct: 116 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 148 >gi|217069514|gb|ACJ83244.1| Rv2986c antigen [Mycobacterium tuberculosis] Length = 152 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 67 LQTNQEVKIDPRRVVVFKASSILKKRIMDDMR 98 +T + VK+ P V F+ + K + R Sbjct: 1 PRTGETVKVKPTSVPAFRPGAQFKAVVSGAQR 32 >gi|150009457|ref|YP_001304200.1| hypothetical protein BDI_2870 [Parabacteroides distasonis ATCC 8503] gi|149937881|gb|ABR44578.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 144 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L K I LS D + +L + G +++ F F + G Sbjct: 35 LNK--LCKLICSRSTLSSADVKAVLDSLNWAMDLELSSGNVVQLGEFGNFRMSINSE--G 90 Query: 65 RNLQTNQEV---KIDPRRVVVFKASSILK 90 N T ++ KI R++ F S L+ Sbjct: 91 TN--TPEDFNATKIKGARIIFF-PGSALR 116 >gi|329960902|ref|ZP_08299181.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328532188|gb|EGF58992.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 207 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 17/46 (36%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH 55 +V IS + D V L +E+ G ++KI F Sbjct: 35 IVDKISYASSFTPGDIKGLVKALADEMACQMASGRSVKIDGIGVFS 80 >gi|304384122|ref|ZP_07366575.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304334749|gb|EFM01026.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 150 Score = 36.8 bits (85), Expect = 1.0, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR--- 65 L K I+ E S D +T L + D +G ++K+ TF+ ++ G Sbjct: 30 QLCKRIAAESTASPADVRAVLTALAPIMADYMAQGRSVKLDGIGTFYFTAVAAKGGVATE 89 Query: 66 -----NLQTNQEVK-IDPRR 79 N T V+ I R Sbjct: 90 KEVTANQITGVRVRFIPETR 109 >gi|153808754|ref|ZP_01961422.1| hypothetical protein BACCAC_03053 [Bacteroides caccae ATCC 43185] gi|149128580|gb|EDM19798.1| hypothetical protein BACCAC_03053 [Bacteroides caccae ATCC 43185] Length = 261 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 10/98 (10%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 +VK I++ + D + N+I + + G +++ F K K +R + + Sbjct: 96 IVKEIAQASSFTPADIEGVQLAIENKISEYLISGYHVQLGDLGYFSAKLK-ARPVMDAK- 153 Query: 70 NQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKCN 103 +I + + V F+ SS +K++ + K Sbjct: 154 ----EIHAQSIYFDNVNFRPSSSFRKKVRGFVEKAKSG 187 >gi|112253289|gb|ABI14232.1| major basic nuclear protein [Pfiesteria piscicida] gi|112253291|gb|ABI14233.1| major basic nuclear protein [Pfiesteria piscicida] Length = 108 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 4/96 (4%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 SK+IT+ L ++IS L + D ++ +T L + + + + A + K + Sbjct: 13 SKSITKGGLAEAISGSTELKKFDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKPA 72 Query: 62 -RVGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 + G+ + V++ + VV + +K+ + Sbjct: 73 TKAGKREMFGKVVEVKARPAKTVVKAFPVAAMKQAV 108 >gi|13508268|ref|NP_110218.1| histone like protein [Mycoplasma pneumoniae M129] gi|2496402|sp|P75249|Y529_MYCPN RecName: Full=Uncharacterized protein MG353 homolog gi|1673985|gb|AAB95961.1| bacterial histone-like protein [Mycoplasma pneumoniae M129] gi|301633234|gb|ADK86788.1| putative DNA-binding protein HU [Mycoplasma pneumoniae FH] Length = 109 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKG 60 SK ++RS++ K I+ G+ L + + V + + + + Sbjct: 8 SKPLSRSEINKIIAVATGVKEAKIKEIFKYLNTLLLNELVSRSVCILPENLGKLRITIRN 67 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKK 91 +R+ ++++T + I P+ +V + S +K+ Sbjct: 68 ARIQKDMKTGEMKHIPPKPLVRYSPSKTIKE 98 >gi|329961378|ref|ZP_08299501.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328531855|gb|EGF58678.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 156 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 14/92 (15%) Query: 8 SDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRN 66 DL +S + G+ R + L + + +G ++++ F F R G N Sbjct: 35 KDLCDEVS-KIGMAPRGVVKLVLDGLIDTLNMDLNKGFSVQLGEFGCF-------RPGIN 86 Query: 67 LQTNQEV-KIDP----RRVVVFKASSILKKRI 93 ++ +++ ++ RR ++F K + Sbjct: 87 AKSQEKLEEVTASTIYRRKIIFTPGVYFKDML 118 >gi|238024276|ref|YP_002908508.1| DNA-binding protein BpH [Burkholderia glumae BGR1] gi|237878941|gb|ACR31273.1| DNA-binding protein BpH [Burkholderia glumae BGR1] Length = 147 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + TL N I S +G + V K Sbjct: 51 TKASLATHIAERAEVELKTVKAVLATLENVILGSIHKKGAGEFTLPGLLKISAQAVAAKK 110 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 111 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145 >gi|150006607|ref|YP_001301351.1| hypothetical protein BVU_4127 [Bacteroides vulgatus ATCC 8482] gi|149935031|gb|ABR41729.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 207 Score = 36.8 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 29 ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 88 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ + Sbjct: 89 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 121 >gi|319642882|ref|ZP_07997518.1| hypothetical protein HMPREF9011_03118 [Bacteroides sp. 3_1_40A] gi|317385430|gb|EFV66373.1| hypothetical protein HMPREF9011_03118 [Bacteroides sp. 3_1_40A] Length = 208 Score = 36.4 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 30 ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 89 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ + Sbjct: 90 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 122 >gi|163752859|ref|ZP_02159983.1| hypothetical protein KAOT1_11902 [Kordia algicida OT-1] gi|161326591|gb|EDP97916.1| hypothetical protein KAOT1_11902 [Kordia algicida OT-1] Length = 128 Score = 36.4 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 L + ++ +S D+ + L + + + G +I + F TF + G++ Sbjct: 36 KQLSERLAAISTVSEVDTIAVLQGLVHLLPEYLCNGSSISLGDFGTFTPHIRSE--GKD- 92 Query: 68 QTNQEV---KIDPRRVVVFKASSILKKRIM 94 T + V I V F+ S K R+ Sbjct: 93 -TPEAVNAQSIKSVNV-TFRPSVEFKNRMK 120 >gi|224024019|ref|ZP_03642385.1| hypothetical protein BACCOPRO_00736 [Bacteroides coprophilus DSM 18228] gi|224017241|gb|EEF75253.1| hypothetical protein BACCOPRO_00736 [Bacteroides coprophilus DSM 18228] Length = 147 Score = 36.4 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 14/93 (15%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 ++ + I +E ++R D+ +T L + + + GE +++ + + G Sbjct: 38 EIAERIQRECTVTRADTMAVLTALEDVVSEGLQSGEIVRLGELGSLQLGLSGK------- 90 Query: 69 TNQEVK------IDPRRVVVFKASSILKKRIMD 95 EV+ + R + F+ L+ + + Sbjct: 91 -GAEVEEEYHVGLIERARINFRPGLTLQDALAN 122 >gi|29346205|ref|NP_809708.1| hypothetical protein BT_0795 [Bacteroides thetaiotaomicron VPI-5482] gi|253568363|ref|ZP_04845774.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29338100|gb|AAO75902.1| DNA-binding protein-like protein [Bacteroides thetaiotaomicron VPI-5482] gi|251842436|gb|EES70516.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 206 Score = 36.4 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 TIT D+ ++I L + D N G +I I +F +K + V Sbjct: 30 TITLEDIAETIESRSSLRQSDVIGSFIEFANVFKQELSNGNSIHIPGVGSFRIKAESPEV 89 Query: 64 GRNLQTNQEVKIDPRRV----VVFKASSIL 89 R+ + +I + +VF L Sbjct: 90 -RSPK-----EIRAENIHCSGIVFTPEKDL 113 >gi|294775432|ref|ZP_06740945.1| putative DNA-binding protein [Bacteroides vulgatus PC510] gi|294450673|gb|EFG19160.1| putative DNA-binding protein [Bacteroides vulgatus PC510] Length = 208 Score = 36.4 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-------H 55 +TIT +VK +SK S + + + + +G+ +++ TF Sbjct: 30 ETITTDHIVKELSKHSAYSAGCVVGVLQEVADMVVSHLRQGKNVRLDGLGTFSLALSSRE 89 Query: 56 VKQKGS-RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDM 97 V + R V+I + V F+ L KR+ + Sbjct: 90 VTDRKEIRAA-------SVRI---KKVNFRPVPELVKRVRQET 122 >gi|260592265|ref|ZP_05857723.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] gi|260535899|gb|EEX18516.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] Length = 148 Score = 36.4 bits (84), Expect = 1.2, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 17/96 (17%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 D+ + I+ L+R D +T + G ++++ F T + Sbjct: 34 DIARDIAGRSSLTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGTMRLTLSS-------- 85 Query: 69 TNQ------EVK-IDPRRVVVFKASSILKKRIMDDM 97 T +V+ I PR V F LK + D++ Sbjct: 86 TGALDEKSFKVETIKPR--VTFTPGVELKNGLRDNL 119 >gi|212550305|ref|YP_002308625.1| hypothetical protein CFPG_P3-17 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549438|dbj|BAG84103.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 137 Score = 36.4 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 D+V S+SK G ++K + EI + G+ + + +F + + ++ S N Sbjct: 14 DIVSSVSKSTGETKKVVKKIFLQCIEEIKQKLLEGKLVGLRNFLSLTIAERTS----NPS 69 >gi|298484099|ref|ZP_07002267.1| DNA-binding protein [Bacteroides sp. D22] gi|295087683|emb|CBK69206.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] gi|298269780|gb|EFI11373.1| DNA-binding protein [Bacteroides sp. D22] Length = 161 Score = 36.4 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 19/99 (19%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + +T ++ K I++ S+ + + EI + G +++ F + Sbjct: 29 GRKVTVKEVCKRITERSSYSKGELEGCIGEFLLEIVNVLEEGNIVQMGDLGNFRMS---- 84 Query: 62 RVGRNLQTNQEVK---------IDPRRVVVFKASSILKK 91 ++T ID +V+ F S L+K Sbjct: 85 -----IKTGTPTDTVKEFKASCIDKGKVL-FYPGSDLRK 117 >gi|262382902|ref|ZP_06076039.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295780|gb|EEY83711.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 345 Score = 36.4 bits (84), Expect = 1.3, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 23/45 (51%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEA 45 ++K+I R+DL K++S +S+ ++ + + + + + Sbjct: 232 LAKSIDRNDLAKALSNNTNMSKAEADKAIKQYMEIMHKATAEADK 276 >gi|143652|gb|AAB59030.1| HBsu protein [Bacillus subtilis] Length = 25 Score = 36.4 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 19/25 (76%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFV 29 + +++L+ ++++ LS+KD+T+ V Sbjct: 1 MNKTELINAVAEASELSKKDATKAV 25 >gi|332703933|ref|ZP_08424021.1| hypothetical protein Desaf_2813 [Desulfovibrio africanus str. Walvis Bay] gi|332554082|gb|EGJ51126.1| hypothetical protein Desaf_2813 [Desulfovibrio africanus str. Walvis Bay] Length = 116 Score = 36.4 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 21 SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 + +D+ + + I +A+ I TF KQ+G R +V Sbjct: 58 TEEDAYLTLDVMKAIIAMGLNNDDAVDIQGLGTFKTKQEGDR----------------KV 101 Query: 81 VVFKASSILKKRIMD 95 V F + L + I Sbjct: 102 VTFSPETALVEAISK 116 >gi|288927987|ref|ZP_06421834.1| putative non-specific DNA-binding protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330821|gb|EFC69405.1| putative non-specific DNA-binding protein [Prevotella sp. oral taxon 317 str. F0108] Length = 83 Score = 36.4 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + IT + K ++ E +S D +T L + D +G ++K+ +F Sbjct: 22 VGSAITTEQVAKRVAAESTVSPADVRAVLTALGGVMGDYMAQGRSVKLDGIGSF 75 >gi|315642067|ref|ZP_07896929.1| hypothetical protein HMPREF9088_2254 [Enterococcus italicus DSM 15952] gi|315482339|gb|EFU72885.1| hypothetical protein HMPREF9088_2254 [Enterococcus italicus DSM 15952] Length = 247 Score = 36.4 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 29/48 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49 S+ +TR ++++SIS EFG+S++ + + +++ +++ + + Sbjct: 87 SENMTRDEVIQSISNEFGISKEQAEQSISSNSSQMRRQVADENFVLLR 134 >gi|299142480|ref|ZP_07035612.1| DNA-binding protein [Prevotella oris C735] gi|298576202|gb|EFI48076.1| DNA-binding protein [Prevotella oris C735] Length = 152 Score = 36.4 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 18/48 (37%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 D+ I + + + D +T L + + +K+ TF + Sbjct: 35 DIAAIIERNCSMKKSDVKAVLTELVEVMTAQIQDSKRVKLDGLGTFKI 82 >gi|281426071|ref|ZP_06256984.1| putative non-specific DNA-binding protein [Prevotella oris F0302] gi|281399795|gb|EFB30626.1| putative non-specific DNA-binding protein [Prevotella oris F0302] Length = 152 Score = 36.4 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 18/48 (37%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 D+ I + + + D +T L + + +K+ TF + Sbjct: 35 DIAAIIERNCSMKKSDVKAVLTELVEVMTAQIQDSKRVKLDGLGTFKI 82 >gi|258648966|ref|ZP_05736435.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260850574|gb|EEX70443.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.4 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEIIQTLSDGNSVRLGDLGSF 79 >gi|255693885|ref|ZP_05417560.1| putative integration host factor IHF alpha subunit [Bacteroides finegoldii DSM 17565] gi|260620290|gb|EEX43161.1| putative integration host factor IHF alpha subunit [Bacteroides finegoldii DSM 17565] Length = 39 Score = 36.4 bits (84), Expect = 1.5, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLF 33 M++ +T DL ++ + +++KD+ FV F Sbjct: 1 MNERLTIQDLTDLLAAKHSMTKKDAEAFVKEFF 33 >gi|62464765|ref|YP_220405.1| hypothetical protein p49879_1p28 [Leptospirillum ferrooxidans] gi|60739066|gb|AAX36032.1| ORF62 [Leptospirillum ferrooxidans] Length = 62 Score = 36.0 bits (83), Expect = 1.5, Method: Composition-based stats. Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 16/69 (23%) Query: 28 FVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASS 87 + I ++ +G + + F F + V F A Sbjct: 1 MIDGALALIVETVAQGGEVGLVGFGKFRPVSRTLWA----------------VPAFAAGK 44 Query: 88 ILKKRIMDD 96 + + + Sbjct: 45 HFLEALKKN 53 >gi|262383554|ref|ZP_06076690.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294452|gb|EEY82384.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 154 Score = 36.0 bits (83), Expect = 1.6, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 24/54 (44%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + K + ++ +++ +SR D+ + L + D +G +K+ TF Sbjct: 22 VGKPVNTDEVADRLAQISTVSRADTYAVLKDLAGVLADYMAQGRTVKMDGLGTF 75 >gi|329963107|ref|ZP_08300887.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328529148|gb|EGF56078.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 179 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 21/50 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +T +L + ++K+ +SR D + + + + D G + F Sbjct: 31 LTLKELSQRVAKQTTVSRADVSAVLISTVENMIDGLHEGLQVDFGELGKF 80 >gi|258648969|ref|ZP_05736438.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260850580|gb|EEX70449.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79 >gi|258647796|ref|ZP_05735265.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260852250|gb|EEX72119.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79 >gi|160891184|ref|ZP_02072187.1| hypothetical protein BACUNI_03631 [Bacteroides uniformis ATCC 8492] gi|156859405|gb|EDO52836.1| hypothetical protein BACUNI_03631 [Bacteroides uniformis ATCC 8492] Length = 139 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 17/46 (36%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +L K ++ L D+ + L + I D G + I F Sbjct: 36 ELAKRLAFVSSLQVGDAQSVLVQLPDIIADYLASGRTVNIKGLGNF 81 >gi|13488420|ref|NP_109427.1| hypothetical protein msl9563 [Mesorhizobium loti MAFF303099] gi|14028174|dbj|BAB54766.1| msl9563 [Mesorhizobium loti MAFF303099] Length = 78 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 8 SDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFA 52 +DL + +++ GLSR+D + V ++F I ++ G + S + Sbjct: 29 ADLADQLMAAAEKQGLSRRDISEEVGSVFQVILEAMQNRSGGRLYSSRWG 78 >gi|323344754|ref|ZP_08084978.1| DNA-binding protein [Prevotella oralis ATCC 33269] gi|323094024|gb|EFZ36601.1| DNA-binding protein [Prevotella oralis ATCC 33269] Length = 206 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 24/90 (26%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS---------- 61 I K L+ D + + E+ + + G + + F + KG Sbjct: 37 DRIVKATSLTMGDLVGALEAIRYELVEQLMLGNRVHLPGLGYFSLSVKGELYEDPNTHKF 96 Query: 62 RVGRNL--QTNQEVKIDPRRVVVFKASSIL 89 R+ RN +T V F+ L Sbjct: 97 RL-RNPYVRT-----------VNFRPEKEL 114 >gi|270294475|ref|ZP_06200677.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317481079|ref|ZP_07940158.1| hypothetical protein HMPREF1007_03277 [Bacteroides sp. 4_1_36] gi|270275942|gb|EFA21802.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316902792|gb|EFV24667.1| hypothetical protein HMPREF1007_03277 [Bacteroides sp. 4_1_36] Length = 141 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 17/46 (36%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +L K ++ L D+ + L + I D G + I F Sbjct: 38 ELAKRLAFVSSLQVGDAQSVLVQLPDIIADYLASGRTVNIKGLGNF 83 >gi|258648519|ref|ZP_05735988.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260851287|gb|EEX71156.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79 >gi|329964884|ref|ZP_08301892.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328524525|gb|EGF51593.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 185 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + +++ + + + + LS D + ++ + + G+ + IS F + K Sbjct: 49 LGQSVNLAFIAQKMQDTSSLSIGDIKSTMQNFVEKLKEQLLEGKTVNISGLGVFMLAAKS 108 Query: 61 SRVGRNLQTNQEV--KIDPRRV----VVFKASSILK 90 ++ I + V + F+A+ LK Sbjct: 109 K--------GADLAKDITAKSVESVRICFQANKELK 136 >gi|254253671|ref|ZP_04946988.1| hypothetical protein BDAG_02949 [Burkholderia dolosa AUO158] gi|124898316|gb|EAY70159.1| hypothetical protein BDAG_02949 [Burkholderia dolosa AUO158] Length = 159 Score = 36.0 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 63 TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 122 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 123 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 157 >gi|237717648|ref|ZP_04548129.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229453050|gb|EEO58841.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 161 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 22/48 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ + IS L+ D + L ++ G+ +K+ +F TF + Sbjct: 28 EMAEEISYATSLTDGDVLNVLRALIRQMKVQLAAGKIVKMENFGTFQI 75 >gi|258647720|ref|ZP_05735189.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852559|gb|EEX72428.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79 >gi|258647591|ref|ZP_05735060.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852396|gb|EEX72265.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79 >gi|258647452|ref|ZP_05734921.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852721|gb|EEX72590.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +V I K G+S + L EI + G ++++ +F + Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSFRLTMHAE 86 >gi|258647221|ref|ZP_05734690.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|258647772|ref|ZP_05735241.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852633|gb|EEX72502.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852970|gb|EEX72839.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLADGNSVRLGDLGSF 79 >gi|154493515|ref|ZP_02032835.1| hypothetical protein PARMER_02854 [Parabacteroides merdae ATCC 43184] gi|154086725|gb|EDN85770.1| hypothetical protein PARMER_02854 [Parabacteroides merdae ATCC 43184] Length = 209 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 14/37 (37%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 S D + + + + + G+ ++I F V Sbjct: 41 YSEADIAGALQLITDLVTERLREGDNVEIEGLGFFSV 77 >gi|219125000|ref|XP_002182778.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405572|gb|EEC45514.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 559 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 11/57 (19%) Query: 48 ISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV------VVFKA-----SSILKKRI 93 +++F+ F V +K R RN T +++DP V F A S LK+ + Sbjct: 10 LATFSQFPVTKKNGRHSRNPATGTPLRVDPDDVSNDATSAHFTAHCHIQSKTLKRAL 66 >gi|255690372|ref|ZP_05414047.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260624177|gb|EEX47048.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 173 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK-------QKG 60 S++ I++E L+ ++ + L + + G+++K+ + TF+V + Sbjct: 59 SEVAMLIAEETTLNPMEAAMAIRQLRKVMQRLLLDGKSVKLGDWGTFNVTLNTEGADTRE 118 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDD 96 + N++ V I F+ LK + Sbjct: 119 ALTAHNVK---RVNI------NFQPGDELKTAMQKA 145 >gi|253568057|ref|ZP_04845468.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842130|gb|EES70210.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 182 Score = 36.0 bits (83), Expect = 1.9, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++S+++E LS +D + + + V G +K+ F Sbjct: 38 IESLAREIESIGSLSVEDVEHVMQSFVRSMKKVLVAGNKVKVDGLGIF 85 >gi|332702648|ref|ZP_08422736.1| hypothetical protein Desaf_1504 [Desulfovibrio africanus str. Walvis Bay] gi|332552797|gb|EGJ49841.1| hypothetical protein Desaf_1504 [Desulfovibrio africanus str. Walvis Bay] Length = 70 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 19/85 (22%) Query: 5 ITRSDLVKSISKEF-GLSRKD--STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 IT + ++ ++ L +KD + V +F I + + + I +G+ Sbjct: 2 ITTQEFTSALKEKMPDLFQKDYDARDTVDIIFACIPRALKNADTVDIPGIGQISAHSEGA 61 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKAS 86 R + V FK S Sbjct: 62 R----------------KQVKFKPS 70 >gi|298387693|ref|ZP_06997244.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|298259549|gb|EFI02422.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 180 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++S+++E LS +D + + + V G +K+ F Sbjct: 38 IESLAREIESIGSLSVEDVEHVMQSFVRSMKKVLVAGNKVKVDGLGIF 85 >gi|112253287|gb|ABI14231.1| major basic nuclear protein [Pfiesteria piscicida] Length = 114 Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K+IT+ L +IS E + + D ++ +T L + + + + A + K + Sbjct: 19 GKSITKGGLADAISAETEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 78 >gi|255013246|ref|ZP_05285372.1| hypothetical protein B2_05020 [Bacteroides sp. 2_1_7] gi|298373856|ref|ZP_06983814.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|298268224|gb|EFI09879.1| DNA-binding protein [Bacteroides sp. 3_1_19] Length = 144 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + L K I LS D + +L + G +++ F F + G Sbjct: 35 LNK--LCKLICSRSTLSSADVKAVLDSLNWAMDLELSSGNVVQLGEFGNFRMSINSE--G 90 Query: 65 RN-LQTNQEVKIDPRRVVVFKASSILK 90 N + KI R++ F S L+ Sbjct: 91 TNTPEDFDATKIKGVRIIFF-PGSALR 116 >gi|256839502|ref|ZP_05545011.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738432|gb|EEU51757.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 162 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50 T++ D I++E L++ D + + + +G +++ Sbjct: 110 TLSTQDAADQIAEESSLTKGDVLNVLDRYQRYVIKNLQKGYKVELEG 156 >gi|330998429|ref|ZP_08322253.1| putative DNA-binding protein [Paraprevotella xylaniphila YIT 11841] gi|329568535|gb|EGG50340.1| putative DNA-binding protein [Paraprevotella xylaniphila YIT 11841] Length = 143 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++ IS ++R D ++ L +I + G+ + + +F Sbjct: 34 EIATRISSSCTVTRHDCLAVLSALQEQIIYALQEGKRVHLGDIGSF 79 >gi|281357581|ref|ZP_06244068.1| amino acid-binding ACT domain protein [Victivallis vadensis ATCC BAA-548] gi|281315838|gb|EFA99864.1| amino acid-binding ACT domain protein [Victivallis vadensis ATCC BAA-548] Length = 469 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%) Query: 6 TRSDLVK--SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 TR+ L++ +E GL + + FV + + +++ SF F Sbjct: 81 TRARLIELNRTFEELGLDQAAADDFVNERMDGVRSCLKN--LMQLRSFGHF 129 >gi|218129898|ref|ZP_03458702.1| hypothetical protein BACEGG_01481 [Bacteroides eggerthii DSM 20697] gi|317476881|ref|ZP_07936124.1| hypothetical protein HMPREF1016_03108 [Bacteroides eggerthii 1_2_48FAA] gi|217988008|gb|EEC54333.1| hypothetical protein BACEGG_01481 [Bacteroides eggerthii DSM 20697] gi|316907056|gb|EFV28767.1| hypothetical protein HMPREF1016_03108 [Bacteroides eggerthii 1_2_48FAA] Length = 160 Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L +S+ G+ RK L + + + G+ +++ F F + S VG+ T Sbjct: 37 LCAKVSRILGIHRKTVDLVAAGLVDIMSEEIEDGKTVRLGDFGLF----RPSFVGKCADT 92 Query: 70 NQEVK---IDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 + V I +R++ F ++D M + D GS Sbjct: 93 QEGVTASNIVRKRILFF-PGKAF-SAMLDKMSVTRMAMPDTDYTDGS 137 >gi|282599183|ref|YP_003358495.1| putative histone-like protein [Shigella phage phiSboM-AG3] gi|226973489|gb|ACO94242.1| putative histone-like protein [Shigella phage phiSboM-AG3] Length = 170 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Query: 51 FATF-HVKQKGS--RVGRNLQTNQEVKID 76 F F + +++ + RN QT +E+ I Sbjct: 81 FGVFHNSRERDALFHPSRNPQTGEELPIP 109 >gi|256840874|ref|ZP_05546382.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738146|gb|EEU51472.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 213 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 9 DLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 D V+ I GLS+ + + +TT+ + G+++ + TF + Sbjct: 34 DFVERITYPGSGLSKGNVMQVMTTVAEHLAYCMAEGQSVTLDGIGTFTPR 83 >gi|257470542|ref|ZP_05634632.1| hypothetical protein FulcA4_14446 [Fusobacterium ulcerans ATCC 49185] gi|317064749|ref|ZP_07929234.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313690425|gb|EFS27260.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 23 KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVK-IDPRRVV 81 K + +N + + + + ++ F ++ R T ++ + I P+ + Sbjct: 20 KVVKEKIDLFWNVLLKALEEDKKVIFKNWGAFEKREMKVRKVLVP-TWEKAQYIKPKESI 78 Query: 82 VFKASSILKKRIMDDM 97 F+A + D Sbjct: 79 KFRAGKSFIEIANGDT 94 >gi|255013358|ref|ZP_05285484.1| hypothetical protein B2_05580 [Bacteroides sp. 2_1_7] Length = 213 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 9 DLVKSI-SKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 D V+ I GLS+ + + +TT+ + G+++ + TF + Sbjct: 34 DFVERITYPGSGLSKGNVMQVMTTVAEHLAYCMAEGQSVTLDGIGTFTPR 83 >gi|260591454|ref|ZP_05856912.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] gi|260536485|gb|EEX19102.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] Length = 200 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 K I+ E +S D +T L + D +G ++K+ +F Sbjct: 69 AKRIAAESTVSPADVRAVLTALGGVMGDYMSQGRSVKLDGVGSF 112 >gi|221196919|ref|ZP_03569966.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2M] gi|221203589|ref|ZP_03576608.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2] gi|221177523|gb|EEE09951.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2] gi|221183473|gb|EEE15873.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2M] Length = 158 Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 62 TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 121 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 122 KRFGKDPFTGEERWFPAKPATVRVKARALKKLKDA 156 >gi|255691850|ref|ZP_05415525.1| putative non-specific DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260622575|gb|EEX45446.1| putative non-specific DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 177 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++++++E LS +D + + + + V G +K+ F Sbjct: 38 IEALAREIETIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVEGLGIF 85 >gi|298706421|emb|CBJ29417.1| hypothetical protein Esi_0146_0032 [Ectocarpus siliculosus] Length = 465 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKIS-SFATFHVKQKG 60 +++ + +F I D+ G + + SF T VK++ Sbjct: 50 MTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERK 91 >gi|218262577|ref|ZP_03476982.1| hypothetical protein PRABACTJOHN_02661 [Parabacteroides johnsonii DSM 18315] gi|218223286|gb|EEC95936.1| hypothetical protein PRABACTJOHN_02661 [Parabacteroides johnsonii DSM 18315] Length = 128 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 T+ L ++ LSR D V + I + G ++++ F Sbjct: 34 TKK-LADLVADRCSLSRGDVFASVCEIGGMILELLKDGHSVELDGLGDF 81 >gi|304315862|ref|YP_003851007.1| radical SAM protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777364|gb|ADL67923.1| Radical SAM domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 452 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 16/49 (32%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK--ISSFA 52 T+ DL+ + V F++I + +GE +K I+ F Sbjct: 115 TKKDLI-------------TREAVDAFFDDINERL-KGEKVKPYITLFG 149 >gi|255690663|ref|ZP_05414338.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260623687|gb|EEX46558.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 203 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S TIT L++++++ G ++ L NE + G +++ F F K K Sbjct: 29 SGTITAERLIRTVAQRTGFKEGMIEGILSELQNETLEYLGEGYRVELGEFGFFSAKVKS- 87 Query: 62 RVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMDDMRGRKC 102 R+ N + + V V F+AS + I D+ R+C Sbjct: 88 RLVEN-----KNDLRSNSVSFDGVNFRASKSFRTGIRGDLERRRC 127 >gi|1708440|sp|P80606|IHFB_RHILE RecName: Full=Integration host factor subunit beta; Short=IHF-beta Length = 30 Score = 35.7 bits (82), Expect = 2.3, Method: Composition-based stats. Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLF 33 + +S+LV+ ++ L +D V Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAFL 30 >gi|333030612|ref|ZP_08458673.1| DNA-binding protein [Bacteroides coprosuis DSM 18011] gi|332741209|gb|EGJ71691.1| DNA-binding protein [Bacteroides coprosuis DSM 18011] Length = 170 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 22/52 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + + I + LSR D + ++ + + G+A+ I F++ + Sbjct: 39 ITEKIKEMSSLSRGDIRSVLMNFIEKLKEQLLEGKAVNIEGLGVFNLSLRSQ 90 >gi|260172873|ref|ZP_05759285.1| hypothetical protein BacD2_13473 [Bacteroides sp. D2] gi|315921156|ref|ZP_07917396.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695031|gb|EFS31866.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 161 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRV--- 80 + L + + G+ +K+ F T R N ++ I+ + V Sbjct: 51 QVKLVLDGLLDSLEGYMDEGKTVKLGEFGTL-------RPTFNAKSG----IEAKDVDSS 99 Query: 81 ------VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 +VF + LK + M K DV + SGS Sbjct: 100 NIIVREIVFTPGTQLKTMLNK-MSISKYVPLDVVATSGS 137 >gi|258647755|ref|ZP_05735224.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260852607|gb|EEX72476.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 79 >gi|330893726|gb|EGH26387.1| hypothetical protein PSYMO_35066 [Pseudomonas syringae pv. mori str. 301020] Length = 39 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 7/34 (20%), Positives = 15/34 (44%) Query: 68 QTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRK 101 T ++I ++V+ F + L I + +K Sbjct: 1 STGAAIEIAAKKVIKFVPAKRLNDAINNGAPQKK 34 >gi|112253257|gb|ABI14216.1| major basic nuclear protein [Pfiesteria piscicida] Length = 114 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 K+IT+ L +IS E + + D ++ +T L + + + + A + K + Sbjct: 19 GKSITKGGLADAISAETEVKKSDCSKVLTALAEIVAKEVKKTGKVIVPGIARIVTRTKKA 78 >gi|255693884|ref|ZP_05417559.1| putative integration host factor IHF alpha subunit [Bacteroides finegoldii DSM 17565] gi|260620313|gb|EEX43184.1| putative integration host factor IHF alpha subunit [Bacteroides finegoldii DSM 17565] Length = 371 Score = 35.7 bits (82), Expect = 2.4, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 51 FA--TFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 F TF + SR N+ T + +I V F + L+ I Sbjct: 1 FGSNTFKLIDVDSRESVNVNTGERFQIKGHTKVSFSPDANLRDTINK 47 >gi|212694042|ref|ZP_03302170.1| hypothetical protein BACDOR_03568 [Bacteroides dorei DSM 17855] gi|237727812|ref|ZP_04558293.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212663574|gb|EEB24148.1| hypothetical protein BACDOR_03568 [Bacteroides dorei DSM 17855] gi|229434668|gb|EEO44745.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 157 Score = 35.7 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 21/50 (42%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +T L K +S + +SR D +T + + ++ G+ + F Sbjct: 32 LTLKQLSKRVSSQTTVSRADVVAVLTATVDNLLEALTEGKQVDFGELGKF 81 >gi|260885760|ref|ZP_05735715.2| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260852150|gb|EEX72019.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 35.7 bits (82), Expect = 2.6, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 79 >gi|160882883|ref|ZP_02063886.1| hypothetical protein BACOVA_00845 [Bacteroides ovatus ATCC 8483] gi|156111747|gb|EDO13492.1| hypothetical protein BACOVA_00845 [Bacteroides ovatus ATCC 8483] Length = 205 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 44/116 (37%), Gaps = 16/116 (13%) Query: 7 RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + + ++ +S+ + V + +E+ ++ G +++ F + K Sbjct: 34 KKEFMERVSRSSQTFNYNVIDAVVGVVLDELAETLAEGYIVELGELGHFSISLKC----- 88 Query: 66 NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 T++ + +I + V + S K++I ++ + +K +S + Sbjct: 89 ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 141 >gi|260892769|ref|YP_003238866.1| hypothetical protein Adeg_0877 [Ammonifex degensii KC4] gi|260864910|gb|ACX52016.1| hypothetical protein Adeg_0877 [Ammonifex degensii KC4] Length = 140 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 17/93 (18%) Query: 5 ITRSDLVKSISKEFGLSRKDSTR-FVTTLFNEICDSAVRGEAIKISSFATFHVKQK--GS 61 + ++L + +++ G +KD + + + R +++ F + Sbjct: 1 MKTAELCRLAAEKGGYWKKDVRECLLVHFPAALVEGLKRDGKVRLKGVGVFFLASPPGKR 60 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 R G V F+ SS+L KR+ Sbjct: 61 REGV--------------YVRFRPSSLLLKRLN 79 >gi|257468208|ref|ZP_05632304.1| hypothetical protein FulcA4_02652 [Fusobacterium ulcerans ATCC 49185] gi|317062493|ref|ZP_07926978.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688169|gb|EFS25004.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 65 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 5 ITRSDLVKSISKEFGLSR--KDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR 62 +T + + K+ S+ K+ + +N + + + + ++ F +++ +R Sbjct: 1 MTEEEFI-RFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVIFKNWGVFEKRERKAR 59 Query: 63 V 63 Sbjct: 60 K 60 >gi|13488449|ref|NP_109456.1| hypothetical protein mll9600 [Mesorhizobium loti MAFF303099] gi|14028203|dbj|BAB54795.1| mll9600 [Mesorhizobium loti MAFF303099] Length = 163 Score = 35.3 bits (81), Expect = 2.6, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 8 SDLVKSI---SKEFGLSRKDSTRFVTTLFNEICDSAVR--GEAIKISSFA 52 +DL + +++ GLSR+D + V ++F I ++ G + S + Sbjct: 114 ADLADQLMAAAEKQGLSRRDISEEVGSVFQVILEAMQNRSGGRLYSSRWG 163 >gi|319901615|ref|YP_004161343.1| DNA-binding protein [Bacteroides helcogenes P 36-108] gi|319416646|gb|ADV43757.1| DNA-binding protein [Bacteroides helcogenes P 36-108] Length = 161 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 14/95 (14%) Query: 25 STRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL--QTNQEVKIDP----R 78 + L + + +G ++++ F F R G N QT E +D R Sbjct: 52 VKMVIDGLIDTLNMDLDKGYSVQLGDFGCF-------RPGLNAKSQTGAE-TVDANTVYR 103 Query: 79 RVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSGS 113 R ++F S K + + D +GS Sbjct: 104 RKIIFYPGSYFKNMLTKATVEKLVLGKDNVGSAGS 138 >gi|258648816|ref|ZP_05736285.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] gi|260850978|gb|EEX70847.1| putative non-specific DNA-binding protein [Prevotella tannerae ATCC 51259] Length = 140 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 39 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 83 >gi|258648255|ref|ZP_05735724.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852166|gb|EEX72035.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 35.3 bits (81), Expect = 2.7, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L EI + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEILQTLSDGNSVRLGDLGSF 79 >gi|255014515|ref|ZP_05286641.1| hypothetical protein B2_11444 [Bacteroides sp. 2_1_7] Length = 148 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 +L +SI++E L+ D L + G +++ F + Sbjct: 38 ELCESIAEETALTSADVKSCFDRLPRILARHLKEGRNVQLGEFGS 82 >gi|304384031|ref|ZP_07366486.1| possible DNA-binding protein [Prevotella marshii DSM 16973] gi|304334819|gb|EFM01094.1| possible DNA-binding protein [Prevotella marshii DSM 16973] Length = 201 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 20/94 (21%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS---------- 61 + + K ++ D + + E+ + G + + F + KG Sbjct: 37 ERVEKATAMTVADLVGTLEAIRYELAQQLMLGNRVHLPGLGYFSLSVKGELYEDPKTHKM 96 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 R+ RN + R V F+ L K + D Sbjct: 97 RL-RNPR---------VRTVNFRPEKQLLKTLAD 120 >gi|260172938|ref|ZP_05759350.1| hypothetical protein BacD2_13798 [Bacteroides sp. D2] gi|315921219|ref|ZP_07917459.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695094|gb|EFS31929.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 162 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQE 72 +S+ G+ RK V+ L +++ + G++++I F F + T+ E Sbjct: 40 KVSELCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQIGEFGIFTPTIRAK------STDDE 93 Query: 73 VKIDPRRVVV----FKASSILKKRIMD 95 ++ + +V F I K + D Sbjct: 94 KEVLSKSIVQRKILFYPGKIFKNTLED 120 >gi|154148742|ref|YP_001405859.1| hypothetical protein CHAB381_0253 [Campylobacter hominis ATCC BAA-381] gi|153804751|gb|ABS51758.1| hypothetical protein CHAB381_0253 [Campylobacter hominis ATCC BAA-381] Length = 301 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKIS 49 + + DL++SI+ + G+ K + ++ L I D G + I Sbjct: 139 MNKKDLLESIAFKLGVMPKRTG--ISHLIEAIKDGLSGGNRVLII 181 >gi|333030364|ref|ZP_08458425.1| Peptidoglycan-binding lysin domain protein [Bacteroides coprosuis DSM 18011] gi|332740961|gb|EGJ71443.1| Peptidoglycan-binding lysin domain protein [Bacteroides coprosuis DSM 18011] Length = 482 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + ++ + + D + ++ T F F V+++ V Sbjct: 1 MNSQLFIDKLASKINMQEADVSIYLETFVLGFATELQTYRKASFDPFGVFEVEKRLEYVE 60 Query: 65 RNLQTNQEVKIDPRRVVVFKASSIL 89 + + ++ P VVF +S+IL Sbjct: 61 KR-EDGSKILNPPSLKVVFSSSAIL 84 >gi|153806737|ref|ZP_01959405.1| hypothetical protein BACCAC_01008 [Bacteroides caccae ATCC 43185] gi|149131414|gb|EDM22620.1| hypothetical protein BACCAC_01008 [Bacteroides caccae ATCC 43185] Length = 176 Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++++++E LS +D + + + + V G+ +K+ F Sbjct: 38 IETLAREIESIGSLSVEDVSHVMKSFVRAMKKVLVAGDKVKVDGLGIF 85 >gi|237722941|ref|ZP_04553422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293370718|ref|ZP_06617268.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|229447463|gb|EEO53254.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292634242|gb|EFF52781.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] Length = 206 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 44/116 (37%), Gaps = 16/116 (13%) Query: 7 RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + + ++ +S+ + V + +E+ ++ G +++ F + K Sbjct: 34 KKEFMERVSRSSQTFNYNVIDAVVGVVLDELAETLAEGYIVELGELGHFSISLKC----- 88 Query: 66 NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 T++ + +I + V + S K++I ++ + +K +S + Sbjct: 89 ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 141 >gi|229495520|ref|ZP_04389253.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC 35406] gi|229317503|gb|EEN83403.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC 35406] Length = 160 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA--TFHVKQKGSRVGRN 66 DL+ I + +SR D ++TL I D +G ++I F+++ K ++ + Sbjct: 37 DLISLIGQISSISRGDVLSVISTLTRLIADELAKGNIVEIGELGRLRFNMRSKAAKSVKE 96 Query: 67 LQTNQEVKIDPRRVVVFKASSILKKR-------IMDDMRGRKCNKDDVTSPSG 112 T+ + + F +LK + D+ K T+P Sbjct: 97 F-THNNILTP---TLHFLPGMLLKDARRRIRFTLADEKGKSTEGKGKPTTPPN 145 >gi|218260329|ref|ZP_03475701.1| hypothetical protein PRABACTJOHN_01364 [Parabacteroides johnsonii DSM 18315] gi|218224614|gb|EEC97264.1| hypothetical protein PRABACTJOHN_01364 [Parabacteroides johnsonii DSM 18315] Length = 216 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 2/47 (4%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA 52 + L + I ++ D +++L + + + G I I Sbjct: 37 NK--LTQRIHSRCTVTPADVKAVLSSLSDVVIEELKDGNRIHIEGLG 81 >gi|153809082|ref|ZP_01961750.1| hypothetical protein BACCAC_03390 [Bacteroides caccae ATCC 43185] gi|149128415|gb|EDM19634.1| hypothetical protein BACCAC_03390 [Bacteroides caccae ATCC 43185] Length = 212 Score = 35.3 bits (81), Expect = 3.0, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 12/93 (12%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF-----HVKQKG 60 T+ DL I L+ D T + L + + G + + F ++ Sbjct: 34 TK-DLRSRIQSRCTLNEVDVTAVLDALSQVMGEELCEGRQVHLDGIGYFYPTLTATEEIA 92 Query: 61 SRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 + + N +VK+ + + F++ LK + Sbjct: 93 ADT---PRRNTKVKL---KGIQFRSDQKLKNSV 119 >gi|312984374|ref|ZP_07791713.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05] gi|310894218|gb|EFQ43301.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05] Length = 40 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 6/39 (15%), Positives = 17/39 (43%) Query: 3 KTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAV 41 +TI++ LV I+ + ++ D + + + + Sbjct: 2 ETISKKQLVDQIAAKTDATKTDINTILDAYIDVVKSNVA 40 >gi|253571163|ref|ZP_04848570.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298386726|ref|ZP_06996281.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|251839116|gb|EES67200.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298260400|gb|EFI03269.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 156 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 22/98 (22%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK------QKGS 61 +L + + G R + + + I G+++ I TF ++ Sbjct: 38 KELAQVVELRGGFHRGQVEGILVEVADAIRYLLSMGQSVTIDGLGTFQTALTSPGFERPE 97 Query: 62 RVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMD 95 ++ P +V V F A+S L+ R+ Sbjct: 98 ------------QVTPGQVSVSRVYFVANSALRDRMKK 123 >gi|29349018|ref|NP_812521.1| hypothetical protein BT_3610 [Bacteroides thetaiotaomicron VPI-5482] gi|29340925|gb|AAO78715.1| Histone-like bacterial DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 156 Score = 35.3 bits (81), Expect = 3.1, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 22/98 (22%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK------QKGS 61 +L + + G R + + + I G+++ I TF ++ Sbjct: 38 KELAQVVELRGGFHRGQVEGILVEVADAIRYLLSMGQSVTIDGLGTFQTALTSPGFERPE 97 Query: 62 RVGRNLQTNQEVKIDPRRV----VVFKASSILKKRIMD 95 ++ P +V V F A+S L+ R+ Sbjct: 98 ------------QVTPGQVSVSRVYFVANSALRDRMKK 123 >gi|294672895|ref|YP_003573511.1| DNA-binding protein [Prevotella ruminicola 23] gi|294473265|gb|ADE82654.1| putative DNA-binding protein [Prevotella ruminicola 23] Length = 193 Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L I ++ + + D + L + G+ IK++ F V Sbjct: 36 ELADFIQRQASVKKSDIKAVLQELGEALKHFFEMGQKIKLNGIGIFKV 83 >gi|332306957|ref|YP_004434808.1| CsbD family protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174286|gb|AEE23540.1| CsbD family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 65 Score = 35.3 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 18/29 (62%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFN 34 R++LV I + +G S++++ R V F+ Sbjct: 35 NRTELVGKIQERYGKSKEEAQREVDEFFD 63 >gi|237716756|ref|ZP_04547237.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405531|ref|ZP_06082081.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647595|ref|ZP_06725167.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294805831|ref|ZP_06764706.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229442739|gb|EEO48530.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356406|gb|EEZ05496.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637053|gb|EFF55499.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446968|gb|EFG15560.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 203 Score = 35.3 bits (81), Expect = 3.3, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 22/103 (21%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 + + + K G+SR + + NE+ D G +++ F V +G Sbjct: 36 EFLDRVHKFTGISRSLLVGAMQSFQNELRDLLANGWIVELGDIGYFSVSLQGP------- 88 Query: 69 TNQEVKIDPRRVVV----------FKASSILKKRIMDDMRGRK 101 + ++ V F+A KK + MR + Sbjct: 89 -----PVMKKKDVHAQSISLKNINFRAGKQFKKEVAQQMRPER 126 >gi|126668684|ref|ZP_01739635.1| Tn5044 transposase [Marinobacter sp. ELB17] gi|126626862|gb|EAZ97508.1| Tn5044 transposase [Marinobacter sp. ELB17] Length = 411 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 V+ +++E +++D + + E+ + ++ F+T + +R N T Sbjct: 123 VRDLAREAATTKQDLADIINVVIEELVR-----QRFELPGFSTLQRTARQARSTVN--TG 175 >gi|253581506|ref|ZP_04858731.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836576|gb|EES65111.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 93 Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 +FN I + E +K + TF + ++ R + +N+ +I P++ + F S +L Sbjct: 33 IFNLIAEVIAMDEEVKFKNKGTFSLLKRKKRRIGSPTSNEVREIIPKKTIKFVQSKVL 90 >gi|167840351|ref|ZP_02467035.1| DNA-binding protein BpH2 [Burkholderia thailandensis MSMB43] Length = 117 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 21 TKASLATHIAERAAIEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQAVPAKK 80 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 81 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115 >gi|325855865|ref|ZP_08171908.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] gi|325483751|gb|EGC86714.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A] Length = 198 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 L + I + L+ D V L E+ + G + + F + KG + + +T Sbjct: 35 LCQRIQQATSLTTADIIGTVAALKTELAEELKSGNTVHLPGIGFFSLALKGD-MYEDPKT 93 Query: 70 ------NQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVTS 109 N V R + F+ + + + K KD S Sbjct: 94 HRHHLRNVAV-----RKIRFRPDKDFHEALGEMEFENKTYKDGTPS 134 >gi|224536531|ref|ZP_03677070.1| hypothetical protein BACCELL_01406 [Bacteroides cellulosilyticus DSM 14838] gi|224521787|gb|EEF90892.1| hypothetical protein BACCELL_01406 [Bacteroides cellulosilyticus DSM 14838] Length = 136 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 5/72 (6%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQT 69 + S L +D V T+ + G+++ + F V S G QT Sbjct: 36 IAAEASVRSSLPPEDVIAAVGTVARLMRKHLAMGDSVTLPGLGIFTVS--ASSEGC--QT 91 Query: 70 NQEVKIDPRRVV 81 +E + Sbjct: 92 PEECT-PAKVKP 102 >gi|224026068|ref|ZP_03644434.1| hypothetical protein BACCOPRO_02821 [Bacteroides coprophilus DSM 18228] gi|224019304|gb|EEF77302.1| hypothetical protein BACCOPRO_02821 [Bacteroides coprophilus DSM 18228] Length = 211 Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 18/87 (20%) Query: 20 LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV-KIDPR 78 +S D +T L + + D+ + G + + F + TN E+ + Sbjct: 46 VSESDILAVLTALSDVMVDAFLEGHRVYLRGLGYFDIT----------LTNDEIRSLKEG 95 Query: 79 RV-------VVFKASSILKKRIMDDMR 98 V V F + L+KR+ M+ Sbjct: 96 NVRKVHFKSVKFVPEASLRKRLERGMK 122 >gi|83717539|ref|YP_438900.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264] gi|83651364|gb|ABC35428.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264] Length = 147 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 51 TKASLATHIAERAAIEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 110 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 111 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145 >gi|212694081|ref|ZP_03302209.1| hypothetical protein BACDOR_03607 [Bacteroides dorei DSM 17855] gi|237710282|ref|ZP_04540763.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265751089|ref|ZP_06087152.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212663301|gb|EEB23875.1| hypothetical protein BACDOR_03607 [Bacteroides dorei DSM 17855] gi|229455744|gb|EEO61465.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263237985|gb|EEZ23435.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 207 Score = 34.9 bits (80), Expect = 3.6, Method: Composition-based stats. Identities = 8/47 (17%), Positives = 16/47 (34%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + L I K L+ D + L + + G+ + + F Sbjct: 36 AQLRARIQKHCTLTETDVVAVLDALSRAMGEELAEGKQVHLDGIGFF 82 >gi|57864916|gb|AAW57089.1| ergot alkaloid biosynthetic protein A [Claviceps purpurea] Length = 290 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 5 ITRSDLVKSISKEFGLSRKDS--TRFVTTLFNE------ICDSAVRGEAIKISSFATFHV 56 +T +L + + +E G++ +++ + ++ + D +K F F + Sbjct: 222 MTEGELAEKLMEE-GVTPEEAYMHAAMDSMIKSGSEERVVSDEVKEWTGVKPRGFINFAL 280 Query: 57 KQKGSRVGR 65 +K + R Sbjct: 281 SEKAAWRAR 289 >gi|317479874|ref|ZP_07938991.1| hypothetical protein HMPREF1007_02108 [Bacteroides sp. 4_1_36] gi|316903948|gb|EFV25785.1| hypothetical protein HMPREF1007_02108 [Bacteroides sp. 4_1_36] Length = 214 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 22/89 (24%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------- 54 +T TR +L + I+ G S+ + + L + G ++KI F Sbjct: 29 GQTGTR-ELAEYIAMTSGFSKGVTEGIICELGEALAHEMGMGRSVKIEGLGVFTPALSIY 87 Query: 55 ----------HVKQKGSR----VGRNLQT 69 ++ +R G N +T Sbjct: 88 PDKEREQPQESTTKRNARSIYVSGVNFRT 116 >gi|300727889|ref|ZP_07061268.1| putative DNA-binding protein [Prevotella bryantii B14] gi|299774873|gb|EFI71486.1| putative DNA-binding protein [Prevotella bryantii B14] Length = 194 Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Query: 12 KSISKEFGL----SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 K ++K GL + D +++L EI G+ +K+ +F + Sbjct: 34 KVLAKNIGLRCTVTYPDILAVISSLVTEISLQLQEGKRVKLDGLGSFKI 82 >gi|313205067|ref|YP_004043724.1| DNA-binding protein [Paludibacter propionicigenes WB4] gi|312444383|gb|ADQ80739.1| DNA-binding protein [Paludibacter propionicigenes WB4] Length = 127 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 17/99 (17%) Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 IT + + I++ +S D + L + GE ++ F TF + K Sbjct: 32 ITLKQISREIAENSSTVSDTDVLAVLNDLTKILNRHLKNGEIVRFGDFGTFQINIKSE-- 89 Query: 64 GRNLQTNQE-------VKIDPRRVVVFKASSILKKRIMD 95 E I +V ++ S +++ + + Sbjct: 90 ------GAESEEKFTTAMITDTKV-TYRPGSDVREMLNN 121 >gi|332140529|ref|YP_004426267.1| Tn5044 transposase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550551|gb|AEA97269.1| Tn5044 transposase [Alteromonas macleodii str. 'Deep ecotype'] Length = 990 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTN 70 V+ +++E +++D + + E+ + ++ F+T + +R N T Sbjct: 123 VRDLAREAATTKQDLADIINVVIEELVR-----QRFELPGFSTLQRTARQARSQVN--TG 175 >gi|261820859|ref|YP_003258965.1| hypothetical protein Pecwa_1563 [Pectobacterium wasabiae WPP163] gi|261604872|gb|ACX87358.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163] Length = 48 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVR 42 M+K ++++++V+++S+ F +SR D + +I R Sbjct: 1 MTKKMSKAEIVEALSEWFDVSRYDVLK--DLTLEQIYAELER 40 >gi|194337423|ref|YP_002019217.1| Sporulation domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309900|gb|ACF44600.1| Sporulation domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 355 Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 23/61 (37%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 M +T D V ++ + R+ ++ F+ + + + + + +F V Sbjct: 1 MGAVMTNHDCVGELAGLLDVERQVASSFLIDFSSAMVAELLAVRKLSLKGLGSFTVTHHP 60 Query: 61 S 61 + Sbjct: 61 A 61 >gi|255965914|gb|ACU45245.1| major basic nuclear protein [Karlodinium veneficum] Length = 91 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG--R 65 S L K+++ E GL +K + + +L + + I + K + R Sbjct: 2 SALAKALATEHGLKQKACSDVLNSLASIARTEVKKAGIFSIPGLCRIKTRTKPATKAGVR 61 Query: 66 NLQTNQEVKI---DPRRVVVFKASSILKKRI 93 N +EVK+ R +V ++ LKK+I Sbjct: 62 N-VFGKEVKVKAKPARTIVKGYCAAALKKQI 91 >gi|167577274|ref|ZP_02370148.1| DNA-binding protein BpH2 [Burkholderia thailandensis TXDOH] gi|167615413|ref|ZP_02384048.1| DNA-binding protein BpH2 [Burkholderia thailandensis Bt4] gi|257141985|ref|ZP_05590247.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264] Length = 117 Score = 34.9 bits (80), Expect = 3.9, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 21 TKASLATHIAERAAIEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 80 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 81 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115 >gi|225017768|ref|ZP_03706960.1| hypothetical protein CLOSTMETH_01697 [Clostridium methylpentosum DSM 5476] gi|224949419|gb|EEG30628.1| hypothetical protein CLOSTMETH_01697 [Clostridium methylpentosum DSM 5476] Length = 482 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 20/84 (23%) Query: 3 KTITRSDL-VKSISKEFGLSRKDSTRFVTTLFNEI----------------CDSAVRGEA 45 K++ R L + IS LS + + + + + RGE Sbjct: 105 KSMLRKQLGIDVISVSEPLSDDKMSILIEAMIEAMDEYYSINLSEEVTRGMTEKVRRGEP 164 Query: 46 IKISSFATFHVKQKGSRVGRNLQT 69 + I +F + +K+K N +T Sbjct: 165 VSIPAFG-YSIKEKQYYP--NPKT 185 >gi|160890585|ref|ZP_02071588.1| hypothetical protein BACUNI_03028 [Bacteroides uniformis ATCC 8492] gi|156859584|gb|EDO53015.1| hypothetical protein BACUNI_03028 [Bacteroides uniformis ATCC 8492] Length = 208 Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 22/89 (24%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF------- 54 +T TR +L + I+ G S+ + + L + G ++KI F Sbjct: 23 GQTGTR-ELAEYIAMTSGFSKGVTEGIICELGEALAHEMGMGRSVKIEGLGVFTPALSIY 81 Query: 55 ----------HVKQKGSR----VGRNLQT 69 ++ +R G N +T Sbjct: 82 PDKEREQPQESTTKRNARSIYVSGVNFRT 110 >gi|72537504|gb|AAZ73681.1| hypothetical protein [Lyngbya majuscula CCAP 1446/4] Length = 680 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 11 VKSISKEFGLSRKDST---RFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 + I + L + + + + F+ S GE + + S V ++ + R+ Sbjct: 275 ISKIDSKTQLLKSEMKTPTEILNSAFDTASQSLKTGEFLMLPS----EVVEQIEYICRHP 330 Query: 68 QTNQEV 73 Q + Sbjct: 331 QNKAGI 336 >gi|161521145|ref|YP_001584572.1| histone family protein DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|189352677|ref|YP_001948304.1| histone-like DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|221212497|ref|ZP_03585474.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD1] gi|160345195|gb|ABX18280.1| histone family protein DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|189336699|dbj|BAG45768.1| histone-like DNA-binding protein [Burkholderia multivorans ATCC 17616] gi|221167596|gb|EEE00066.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD1] Length = 147 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 51 TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAKK 110 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 111 KRFGKDPFTGEERWFPAKPATVRVKARALKKLKDA 145 >gi|109898051|ref|YP_661306.1| CsbD-like [Pseudoalteromonas atlantica T6c] gi|109700332|gb|ABG40252.1| CsbD-like protein [Pseudoalteromonas atlantica T6c] Length = 65 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 19/29 (65%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNE 35 R++LV I +++G S++++ R V F+ Sbjct: 36 RTELVGKIQEKYGKSKEEAEREVDDFFDS 64 >gi|332877124|ref|ZP_08444875.1| putative DNA-binding protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685014|gb|EGJ57860.1| putative DNA-binding protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 143 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 20/46 (43%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++ IS ++R D ++ L +I + G+ + + +F Sbjct: 34 EIATRISGTCTVTRHDCLAVLSALQEQIIYALQEGKRVHLGDIGSF 79 >gi|300871249|ref|YP_003786122.1| hypothetical protein BP951000_1640 [Brachyspira pilosicoli 95/1000] gi|300688950|gb|ADK31621.1| hypothetical protein BP951000_1640 [Brachyspira pilosicoli 95/1000] Length = 503 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 12 KSISKEFGLSRKDS--TRFVTTLFNEICDSAVRGEAIKISSFATF 54 +I++++ + + + +F I GE + I +F TF Sbjct: 29 NTITEKYDTVKNRAIKKKLYEMIFENIRHLVDNGEKVYIENFGTF 73 >gi|167590247|ref|ZP_02382635.1| histone family protein DNA-binding protein [Burkholderia ubonensis Bu] Length = 117 Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATF---HVKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 21 TKASLAAHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQAVPAKK 80 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 81 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115 >gi|304382270|ref|ZP_07364777.1| possible DNA-binding protein [Prevotella marshii DSM 16973] gi|304336627|gb|EFM02856.1| possible DNA-binding protein [Prevotella marshii DSM 16973] Length = 214 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 24/90 (26%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS---------- 61 + I K L+ D + E+ D + G + + F + KG Sbjct: 37 QHIEKATALTTADLIGAFEAVKTEMADQLMLGNRVHLPGLGYFSLSIKGELYEDPKTHRF 96 Query: 62 RVGRNL--QTNQEVKIDPRRVVVFKASSIL 89 R+ RN +T V F+ L Sbjct: 97 RL-RNPYVRT-----------VNFRPEKRL 114 >gi|88808145|ref|ZP_01123656.1| hypothetical protein WH7805_08281 [Synechococcus sp. WH 7805] gi|88788184|gb|EAR19340.1| hypothetical protein WH7805_08281 [Synechococcus sp. WH 7805] Length = 89 Score = 34.9 bits (80), Expect = 4.2, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 ++ D+ SIS+ + + L I ++ GE +++ F + + +R Sbjct: 1 MSIKDITASISEAEKIPAGKVRKITKALLERIGEAIDNGEKLQLPGL-VFTPRTQPAREA 59 >gi|167764897|ref|ZP_02437018.1| hypothetical protein BACSTE_03289 [Bacteroides stercoris ATCC 43183] gi|167697566|gb|EDS14145.1| hypothetical protein BACSTE_03289 [Bacteroides stercoris ATCC 43183] Length = 212 Score = 34.9 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 17/89 (19%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------HVKQKGSRVG 64 I + L+ D T + L + + G + + F V + R Sbjct: 40 KIQERCSLTETDVTAVLDALSHVLGQELGDGRQVHLDGIGYFHPTLKCIEEVTAETKRK- 98 Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93 T + + + F+A LK + Sbjct: 99 ---NTKVRL-----KGIKFRADQALKNEV 119 >gi|158340432|ref|YP_001521787.1| hypothetical protein AM1_C0360 [Acaryochloris marina MBIC11017] gi|158310673|gb|ABW32287.1| hypothetical protein AM1_C0360 [Acaryochloris marina MBIC11017] Length = 63 Score = 34.9 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 22/44 (50%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKI 48 + +S+LV I+ G++ K + +T + I + GE I + Sbjct: 1 MNKSELVDVIAGNIGVTMKQADTIITAITGTIIEIVSSGEKISL 44 >gi|257469614|ref|ZP_05633706.1| hypothetical protein FulcA4_09758 [Fusobacterium ulcerans ATCC 49185] gi|317063850|ref|ZP_07928335.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689526|gb|EFS26361.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 98 Score = 34.9 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ + V +N + + I I ++ F K SR + P+ ++ F Sbjct: 21 ETKKKVDLFWNALFKLLNDEKKIVIKNWGIFEKKSVKSRKVVVPTWTEARYTKPKEIIKF 80 Query: 84 KASSILKKRIMDDMRGRK 101 +A L K++ + Sbjct: 81 RAGERLIKKVNKSGEANE 98 >gi|171318607|ref|ZP_02907755.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] gi|171096205|gb|EDT41124.1| histone family protein DNA-binding protein [Burkholderia ambifaria MEX-5] Length = 118 Score = 34.9 bits (80), Expect = 4.4, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K +T L N + S +G + V K Sbjct: 22 TKASLATHIAERAAVEVKAVKAVLTALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 81 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 82 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 116 >gi|255693575|ref|ZP_05417250.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260620640|gb|EEX43511.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 161 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 20/92 (21%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 S L K++S G R + L + + G+ +K+ F T R N Sbjct: 35 SKLCKNVSLICGTHRGQVKLVLDGLLDSLEGYMDEGKTVKLGEFGTL-------RPTFNA 87 Query: 68 QTNQEVKIDPRRV---------VVFKASSILK 90 ++ I+ + V +VF S LK Sbjct: 88 KSG----IEAKDVDSSNIIVRKIVFTPGSQLK 115 >gi|224538138|ref|ZP_03678677.1| hypothetical protein BACCELL_03029 [Bacteroides cellulosilyticus DSM 14838] gi|224520266|gb|EEF89371.1| hypothetical protein BACCELL_03029 [Bacteroides cellulosilyticus DSM 14838] Length = 167 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG---- 64 L + ++++ + D + L + + + +++ TF V + G Sbjct: 36 QLGEMVAEKCSATPGDVHNVIRNLMSVMRMQLLNSRTVRLDGLGTFTVIARTRGKGVDKE 95 Query: 65 --RNL 67 N Sbjct: 96 KDVNP 100 >gi|170702375|ref|ZP_02893266.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|172062904|ref|YP_001810555.1| histone family protein DNA-binding protein [Burkholderia ambifaria MC40-6] gi|170132710|gb|EDT01147.1| histone family protein DNA-binding protein [Burkholderia ambifaria IOP40-10] gi|171995421|gb|ACB66339.1| histone family protein DNA-binding protein [Burkholderia ambifaria MC40-6] Length = 149 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K +T L N + S +G + V K Sbjct: 53 TKASLATHIAERAAVEVKAVKAVLTALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147 >gi|160889490|ref|ZP_02070493.1| hypothetical protein BACUNI_01914 [Bacteroides uniformis ATCC 8492] gi|270296627|ref|ZP_06202826.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479988|ref|ZP_07939103.1| hypothetical protein HMPREF1007_02220 [Bacteroides sp. 4_1_36] gi|156861007|gb|EDO54438.1| hypothetical protein BACUNI_01914 [Bacteroides uniformis ATCC 8492] gi|270272614|gb|EFA18477.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316903933|gb|EFV25772.1| hypothetical protein HMPREF1007_02220 [Bacteroides sp. 4_1_36] Length = 167 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 19/51 (37%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + + LS D + ++ + + G+ + I+ F + K Sbjct: 39 IAQKMQDRSSLSIGDIKSTMQNFVEKLKEQLLEGKTVNIAGLGVFILAAKS 89 >gi|56697454|ref|YP_167822.1| DNA-binding protein HU, putative [Ruegeria pomeroyi DSS-3] gi|56679191|gb|AAV95857.1| DNA-binding protein HU, putative [Ruegeria pomeroyi DSS-3] Length = 91 Score = 34.5 bits (79), Expect = 4.5, Method: Composition-based stats. Identities = 5/60 (8%), Positives = 21/60 (35%), Gaps = 1/60 (1%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64 + + +L+ + + +K V + + ++ + + + V + + G Sbjct: 1 MRKRELIDLVVARSDVKKKFVKPAVEAMLAILGEAISQERDLNLQPLGKLKVN-RSADKG 59 >gi|229496075|ref|ZP_04389797.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC 35406] gi|229316971|gb|EEN82882.1| putative DNA-binding protein [Porphyromonas endodontalis ATCC 35406] Length = 170 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 6/46 (13%), Positives = 16/46 (34%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + ++ E +S D + + G+++ TF Sbjct: 36 EFIDKVADETTISSADVKAVFDRAGKVLVEQLREGKSVDCGDLGTF 81 >gi|54295460|ref|YP_127875.1| hypothetical protein lpl2546 [Legionella pneumophila str. Lens] gi|53755292|emb|CAH16786.1| hypothetical protein lpl2546 [Legionella pneumophila str. Lens] Length = 510 Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 14/53 (26%) Query: 36 ICDSA-----VRGEAIKISSFA---TFHVKQKGSRVGRNLQTNQEVKIDPRRV 80 + + +G + I F T +KQK N T +E+ I + Sbjct: 399 MVSALGCQGFSKGSLLTIVGFGHPYTLVIKQK------NPATGKEISITTKNT 445 >gi|332297494|ref|YP_004439416.1| hypothetical protein Trebr_0849 [Treponema brennaborense DSM 12168] gi|332180597|gb|AEE16285.1| hypothetical protein Trebr_0849 [Treponema brennaborense DSM 12168] Length = 126 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 19/96 (19%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV------KQ 58 IT+S ++ IS G D + L + + RGE +++ + + K+ Sbjct: 37 ITKS--IEKISTVSG---ADIRAVLYALVDVSVQALERGEIVRLGDLGSMRLTLSSEGKE 91 Query: 59 KGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIM 94 K + V T +K +R ++F LK+ + Sbjct: 92 KEADV-----TAASIK---KRGIIFSPGKKLKEMLE 119 >gi|330884750|gb|EGH18899.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 47 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 5/47 (10%), Positives = 15/47 (31%) Query: 14 ISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 +++ + + + L + D G I + V ++ Sbjct: 1 MAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERP 47 >gi|256841010|ref|ZP_05546517.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736853|gb|EEU50180.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 198 Score = 34.5 bits (79), Expect = 4.7, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL K I ++ D + +L + G+ + I V + Sbjct: 36 DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89 Query: 69 TNQEVKIDPR----RVVVFKASSILKKRIM 94 +I + V F+ LK + Sbjct: 90 VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119 >gi|150008989|ref|YP_001303732.1| hypothetical protein BDI_2385 [Parabacteroides distasonis ATCC 8503] gi|255014820|ref|ZP_05286946.1| hypothetical protein B2_12994 [Bacteroides sp. 2_1_7] gi|298375778|ref|ZP_06985734.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|149937413|gb|ABR44110.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|298266815|gb|EFI08472.1| DNA-binding protein [Bacteroides sp. 3_1_19] Length = 198 Score = 34.5 bits (79), Expect = 4.8, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL K I ++ D + +L + G+ + I V + Sbjct: 36 DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89 Query: 69 TNQEVKIDPR----RVVVFKASSILKKRIM 94 +I + V F+ LK + Sbjct: 90 VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119 >gi|110596938|ref|ZP_01385228.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] gi|110341625|gb|EAT60085.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031] Length = 335 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 4/54 (7%), Positives = 21/54 (38%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQ 58 +T D ++ ++ + +++ + + + + + + F V++ Sbjct: 1 MTNHDFIEELAGLLAMESQEAHALLNSFSGAMVAEFLACGKLTVKGLGRFAVRK 54 >gi|257468699|ref|ZP_05632793.1| hypothetical protein FulcA4_05115 [Fusobacterium ulcerans ATCC 49185] gi|317062954|ref|ZP_07927439.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688630|gb|EFS25465.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 96 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 1/83 (1%) Query: 5 ITRSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 +T + +K K + S + + +N + + + + + + F ++ SR Sbjct: 1 MTEGEFIKFYKKRNKIKSHRLVKEKIDLFWNALFKALDEDKKVVLQRWGVFEKREMKSRK 60 Query: 64 GRNLQTNQEVKIDPRRVVVFKAS 86 + + P+ + F+A Sbjct: 61 IKVPMWEEPTYTKPKESIKFRAG 83 >gi|262383879|ref|ZP_06077015.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294777|gb|EEY82709.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 198 Score = 34.5 bits (79), Expect = 4.9, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL K I ++ D + +L + G+ + I V + Sbjct: 36 DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89 Query: 69 TNQEVKIDPR----RVVVFKASSILKKRIM 94 +I + V F+ LK + Sbjct: 90 VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119 >gi|237714768|ref|ZP_04545249.1| conserved hypothetical protein [Bacteroides sp. D1] gi|255691381|ref|ZP_05415056.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|262406956|ref|ZP_06083505.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644144|ref|ZP_06721919.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294805709|ref|ZP_06764588.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298479780|ref|ZP_06997980.1| DNA-binding protein [Bacteroides sp. D22] gi|229445093|gb|EEO50884.1| conserved hypothetical protein [Bacteroides sp. D1] gi|260623025|gb|EEX45896.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|262355659|gb|EEZ04750.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640509|gb|EFF58752.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294447032|gb|EFG15620.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298274170|gb|EFI15731.1| DNA-binding protein [Bacteroides sp. D22] Length = 159 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL + I+K + + L + + + +G ++++ F F R G N + Sbjct: 36 DLCEEITKVGMVPSGAVKFVLDALIDTLNLNLRKGISVQLGDFGCF-------RPGMNCE 88 Query: 69 ---TNQEVKIDPRRVVV--FKASSILKKRIMDDMRGRKCNKDDVT 108 T +EV D R V F K+ + + DD + Sbjct: 89 SQDTEKEVDSDTIRRVKIIFTPGYKFKEMLSKVSVQKAVASDDGS 133 >gi|241949125|ref|XP_002417285.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223640623|emb|CAX44910.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 770 Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 53 TFHVKQKGS--RVGRNLQTNQEVKIDPRR--VV---VFKASSILKKRIMDDMRGRK 101 +F +K+ + GRN QT Q R V F S K++IM+D RK Sbjct: 311 SFKIKETSAAYESGRNPQTRQTYICPAARDWVPNLKHFLIRSEFKEKIMNDESFRK 366 >gi|326678942|ref|XP_003201209.1| PREDICTED: coiled-coil and C2 domain-containing protein 2A [Danio rerio] Length = 1544 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%) Query: 55 HVKQKGSRVGRNLQTNQEVKIDPRRV 80 V++K +R+ RN + V I V Sbjct: 559 QVREKAARIRRNP--GEPVLIPELTV 582 >gi|237715423|ref|ZP_04545904.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405265|ref|ZP_06081815.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229444732|gb|EEO50523.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356140|gb|EEZ05230.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 166 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 17/46 (36%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + + K G R +T + + I G+ + I TF Sbjct: 35 EFAEYMEKRSGFHRGQIDGILTEMVDAIRSLLSIGQPVTIEGLGTF 80 >gi|260641871|ref|ZP_05413827.2| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260624439|gb|EEX47310.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 214 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 44/116 (37%), Gaps = 16/116 (13%) Query: 7 RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + + ++ +S+ + V + +E+ ++ G I++ F + K Sbjct: 43 KKEFLERVSRSSQTFNYNVIDAVVGVVIDELAEALSEGYTIELGELGYFSISLKC----- 97 Query: 66 NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 T++ + +I + V + S K++I ++ + +K +S + Sbjct: 98 ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 150 >gi|160885407|ref|ZP_02066410.1| hypothetical protein BACOVA_03407 [Bacteroides ovatus ATCC 8483] gi|237719788|ref|ZP_04550269.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|299147276|ref|ZP_07040341.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|156109029|gb|EDO10774.1| hypothetical protein BACOVA_03407 [Bacteroides ovatus ATCC 8483] gi|229451057|gb|EEO56848.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298514554|gb|EFI38438.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 168 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 17/46 (36%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + + K G R +T + + I G+ + I TF Sbjct: 37 EFAEYMEKRSGFHRGQIDGILTEMVDAIRSLLSIGQPVTIEGLGTF 82 >gi|237716287|ref|ZP_04546768.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229443934|gb|EEO49725.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 174 Score = 34.5 bits (79), Expect = 5.1, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + S+++E LS +D + + + + V G +K+ F Sbjct: 32 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 79 >gi|254167229|ref|ZP_04874082.1| hypothetical protein ABOONEI_637 [Aciduliprofundum boonei T469] gi|197624085|gb|EDY36647.1| hypothetical protein ABOONEI_637 [Aciduliprofundum boonei T469] Length = 201 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36 R DL+K ++K GL++KD+ + V + + Sbjct: 164 RDDLIKFLTKRVGLNKKDAEQVVDEIMKSM 193 >gi|254167798|ref|ZP_04874648.1| hypothetical protein ABOONEI_1090 [Aciduliprofundum boonei T469] gi|197623326|gb|EDY35891.1| hypothetical protein ABOONEI_1090 [Aciduliprofundum boonei T469] Length = 201 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36 R DL+K ++K GL++KD+ + V + + Sbjct: 164 RDDLIKFLTKRVGLNKKDAEQVVDEIMKSM 193 >gi|257467763|ref|ZP_05631859.1| hypothetical protein FulcA4_00417 [Fusobacterium ulcerans ATCC 49185] gi|317062054|ref|ZP_07926539.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313687730|gb|EFS24565.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 93 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 32 LFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSIL 89 +FN I + E +K + F + ++ R + + + +I P++ + F S IL Sbjct: 33 IFNLIAEVIAMDEEVKFRNRGIFSLLKRKKRRIGSPTSKEVREIVPKKTIKFVQSKIL 90 >gi|255692613|ref|ZP_05416288.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|294644764|ref|ZP_06722509.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294810580|ref|ZP_06769232.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298481640|ref|ZP_06999831.1| DNA-binding protein [Bacteroides sp. D22] gi|260621672|gb|EEX44543.1| putative DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|292639886|gb|EFF58159.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294442241|gb|EFG11056.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|298272181|gb|EFI13751.1| DNA-binding protein [Bacteroides sp. D22] Length = 168 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 17/46 (36%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + + + K G R +T + + I G+ + I TF Sbjct: 37 EFAEYMEKRSGFHRGQIDGILTEMVDAIRSLLSIGQPVTIEGLGTF 82 >gi|149376709|ref|ZP_01894467.1| hypothetical protein MDG893_00090 [Marinobacter algicola DG893] gi|149358948|gb|EDM47414.1| hypothetical protein MDG893_00090 [Marinobacter algicola DG893] Length = 55 Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats. Identities = 5/24 (20%), Positives = 16/24 (66%) Query: 4 TITRSDLVKSISKEFGLSRKDSTR 27 ++ +S+L+ +I++ +S+ + R Sbjct: 32 SVNKSELIDAIAESADISKAAAGR 55 >gi|303237952|ref|ZP_07324503.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] gi|302481870|gb|EFL44914.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] Length = 156 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 19/49 (38%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 DL I+ ++ D ++ L E+ G + + F +F + Sbjct: 34 KDLATRINDLCTVTEPDILAVISALVKEMNYQLKNGMRVHLDGFGSFKL 82 >gi|258647749|ref|ZP_05735218.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] gi|260852597|gb|EEX72466.1| putative non-specific DNA binding protein [Prevotella tannerae ATCC 51259] Length = 136 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 19/45 (42%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +V I K G+S + L E+ + G ++++ +F Sbjct: 35 IVGRIEKRSGVSSASVKAVLDALQYEVLQTLSDGNSVRLGDLGSF 79 >gi|329962082|ref|ZP_08300093.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] gi|328530730|gb|EGF57588.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057] Length = 203 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 25/102 (24%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--------- 54 +IT +L + I + L+ D + L + + D+ G + + F Sbjct: 32 SITTDELRRHIQEYCSLTETDVLAVLDALSHFVGDALSEGRRVHLDGIGYFTPTLTCTEP 91 Query: 55 ---HVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 K+K T ++ + + F+ L+ I Sbjct: 92 VTLETKRKS--------TKVKL-----KSISFRPDKALRSEI 120 >gi|89068934|ref|ZP_01156316.1| DNA-binding protein HU, putative [Oceanicola granulosus HTCC2516] gi|89045515|gb|EAR51579.1| DNA-binding protein HU, putative [Oceanicola granulosus HTCC2516] Length = 136 Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 22/55 (40%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + D V+ + GL ++D+ + ++ GE + + + ++ + Sbjct: 50 KKDFVERVVTRSGLKKRDAKLAAEAALAVLGEAIANGEELNLPPLGKLKINRRKA 104 >gi|301312038|ref|ZP_07217960.1| putative DNA-binding protein [Bacteroides sp. 20_3] gi|300830140|gb|EFK60788.1| putative DNA-binding protein [Bacteroides sp. 20_3] Length = 198 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 10/90 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL K I ++ D + +L + G+ + I V + Sbjct: 36 DLAKRIHGRCTVTPADVAAVLISLSEVTAEYLREGKRVHIDGLGYLQVTLQC------PA 89 Query: 69 TNQEVKIDPR----RVVVFKASSILKKRIM 94 +I + V F+ LK + Sbjct: 90 VQSTHEIRAESIRFKSVAFRPEVELKDSLK 119 >gi|260590683|ref|ZP_05856141.1| putative DNA-binding protein [Prevotella veroralis F0319] gi|260537344|gb|EEX19961.1| putative DNA-binding protein [Prevotella veroralis F0319] Length = 170 Score = 34.5 bits (79), Expect = 5.4, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L I+ ++ D +T L E+ + G+ +K+ S F V Sbjct: 34 KELATRINNTCTVTESDVLAVITALVVEMNYALREGKRVKLDSLGIFRV 82 >gi|303241934|ref|ZP_07328427.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] gi|302590489|gb|EFL60244.1| histone family protein DNA-binding protein [Acetivibrio cellulolyticus CD2] Length = 53 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36 + + ++V +I + GLS +D + + T EI Sbjct: 1 MKKIEIVGNICSKTGLSAQDVMKVLDTFIEEI 32 >gi|289597161|ref|YP_003483857.1| histone family protein DNA-binding protein [Aciduliprofundum boonei T469] gi|289534948|gb|ADD09295.1| histone family protein DNA-binding protein [Aciduliprofundum boonei T469] Length = 199 Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEI 36 R DL+K ++K GL++KD+ + V + + Sbjct: 162 RDDLIKFLTKRVGLNKKDAEQVVDEIMKSM 191 >gi|295084798|emb|CBK66321.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] Length = 159 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 DL + I+K + + L + + + +G ++++ F F R G N + Sbjct: 36 DLCEEITKVGMVPSGAVKFVLDALIDTLNLNLRKGISVQLGDFGCF-------RPGMNCE 88 Query: 69 ---TNQEVKIDPRRVVV--FKASSILKKRIMDDMRGRKCNKDDVT 108 T +EV D R V F K+ + + DD + Sbjct: 89 SQDTEKEVDSDTIRRVKIIFTPGYKFKEMLSKVSVQKAVASDDGS 133 >gi|282879746|ref|ZP_06288476.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1] gi|281306415|gb|EFA98445.1| putative DNA-binding protein [Prevotella timonensis CRIS 5C-B1] Length = 135 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 19/48 (39%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +L I R + +T L +E+ G+ + + F FH+ Sbjct: 28 ELATIIESNTTFKRGEVQGLITELVDELKHQLSDGKTVVLDGFGRFHL 75 >gi|256841942|ref|ZP_05547447.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736258|gb|EEU49587.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 145 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 22/91 (24%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV----------KQKGS 61 I + +S D + +L + G+ +++ F F + K + Sbjct: 41 SMIGERSCVSSADVKAVLDSLIYVMKLEMSDGKIVQLGEFGNFRITFGSEGTKVEKDFNA 100 Query: 62 RVGRNLQTNQEVKIDPRRVVVFKASSILKKR 92 R + F L+ + Sbjct: 101 TKIRRPK------------YTFSPGKALRSQ 119 >gi|189465961|ref|ZP_03014746.1| hypothetical protein BACINT_02324 [Bacteroides intestinalis DSM 17393] gi|189434225|gb|EDV03210.1| hypothetical protein BACINT_02324 [Bacteroides intestinalis DSM 17393] Length = 180 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 16/45 (35%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 L K +S + SR D T + + D GE + F Sbjct: 37 LAKRVSSQTTASRADVTAVIIATVENMIDGLRAGEQVDFGDLGKF 81 >gi|299145384|ref|ZP_07038452.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23] gi|298515875|gb|EFI39756.1| putative non-specific DNA binding protein [Bacteroides sp. 3_1_23] Length = 180 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + S+++E LS +D + + + + V G +K+ F Sbjct: 38 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 85 >gi|260170541|ref|ZP_05756953.1| hypothetical protein BacD2_01623 [Bacteroides sp. D2] gi|293373004|ref|ZP_06619373.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|315918887|ref|ZP_07915127.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292632072|gb|EFF50681.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|313692762|gb|EFS29597.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 180 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + S+++E LS +D + + + + V G +K+ F Sbjct: 38 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 85 >gi|255540627|ref|XP_002511378.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis] gi|223550493|gb|EEF51980.1| anthranilate phosphoribosyltransferase, putative [Ricinus communis] Length = 425 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFA-TFH 55 +L++S+ LS ++ + L +++ ++ + + + + TF Sbjct: 88 ELIESLINRVDLSESEAEASLDYLLDDVNEALISAFLVLLRAKGETFE 135 >gi|160886002|ref|ZP_02067005.1| hypothetical protein BACOVA_04008 [Bacteroides ovatus ATCC 8483] gi|262407891|ref|ZP_06084439.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646759|ref|ZP_06724382.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294807710|ref|ZP_06766503.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|156108815|gb|EDO10560.1| hypothetical protein BACOVA_04008 [Bacteroides ovatus ATCC 8483] gi|262354699|gb|EEZ03791.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637919|gb|EFF56314.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294445146|gb|EFG13820.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295084419|emb|CBK65942.1| Bacterial DNA-binding protein. [Bacteroides xylanisolvens XB1A] Length = 180 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 11 VKSISKEFG----LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + S+++E LS +D + + + + V G +K+ F Sbjct: 38 IDSLAQEIESIGSLSVEDVSHVMKSFVRAMKKVLVAGNKVKVDGLGIF 85 >gi|327400480|ref|YP_004341319.1| Nucleoside-triphosphatase [Archaeoglobus veneficus SNP6] gi|327315988|gb|AEA46604.1| Nucleoside-triphosphatase [Archaeoglobus veneficus SNP6] Length = 172 Score = 34.5 bits (79), Expect = 5.6, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Query: 44 EAIKISSFATFHVKQKGSRVG---RNLQTNQE 72 + + I+ F T V+++G RVG R+L+T +E Sbjct: 27 DTLDITGFITVEVRERGKRVGFRLRDLRTGEE 58 >gi|37542919|gb|AAL61530.1| major basic nuclear protein [Pfiesteria piscicida] Length = 114 Score = 34.5 bits (79), Expect = 5.7, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 26/60 (43%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +++T+ L +++S + + D ++ +T L + + + + A + K + Sbjct: 19 GQSLTKGGLAEALSAATEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 78 >gi|124009779|ref|ZP_01694448.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123984187|gb|EAY24543.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 231 Score = 34.1 bits (78), Expect = 5.8, Method: Composition-based stats. Identities = 8/45 (17%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 3 KTITRSDLVK-SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAI 46 +T+T ++++ I + +++ ++ + F+ I ++ G+AI Sbjct: 27 QTLTLDNIIETMIGRGSTITKAEALSVLEEFFDAITEAIKNGQAI 71 >gi|325299764|ref|YP_004259681.1| DNA-binding protein [Bacteroides salanitronis DSM 18170] gi|324319317|gb|ADY37208.1| DNA-binding protein [Bacteroides salanitronis DSM 18170] Length = 162 Score = 34.1 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 MS+++T VK I+ G SR V + + + + G +++ + F Sbjct: 27 MSESMTFDKFVKHIADHNGVYSRGTVQGVVLDMCECLVEMLLNGNKVQLGALGDF 81 >gi|160884011|ref|ZP_02065014.1| hypothetical protein BACOVA_01985 [Bacteroides ovatus ATCC 8483] gi|299147013|ref|ZP_07040080.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|156110741|gb|EDO12486.1| hypothetical protein BACOVA_01985 [Bacteroides ovatus ATCC 8483] gi|295086142|emb|CBK67665.1| DNA-binding protein, histone-like, putative [Bacteroides xylanisolvens XB1A] gi|298514898|gb|EFI38780.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 158 Score = 34.1 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 + T+ DL K +S + + L + + + +G ++++ F F Sbjct: 29 TNTVNFRDLCKEVSMFGMIPEGAVKHVIDALIDALNTNLNKGLSVQLGDFGCF------- 81 Query: 62 RVGRNLQT-NQEVKIDP---RRV-VVFKASSILKKRIMD 95 R G + ++ +E +D RRV +VF K + + Sbjct: 82 RPGMSCKSQKEEKDVDADTVRRVKIVFTPGYKFKDMLDN 120 >gi|160884702|ref|ZP_02065705.1| hypothetical protein BACOVA_02691 [Bacteroides ovatus ATCC 8483] gi|156109737|gb|EDO11482.1| hypothetical protein BACOVA_02691 [Bacteroides ovatus ATCC 8483] Length = 165 Score = 34.1 bits (78), Expect = 5.9, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 14/89 (15%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH--VKQKGSRVGRNLQTN 70 +S+ G+ RK V+ L +++ + G+++++ F F ++ K + + Sbjct: 40 KVSQLCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQLGEFGIFSPTIRAKSA--------D 91 Query: 71 QEVKIDPRRVVV----FKASSILKKRIMD 95 E + + +V F I K + D Sbjct: 92 DEKDVSSKSIVQRKIIFYPGKIFKDTLED 120 >gi|253568568|ref|ZP_04845979.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298385328|ref|ZP_06994886.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|251842641|gb|EES70721.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298261469|gb|EFI04335.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 173 Score = 34.1 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 6/54 (11%), Positives = 21/54 (38%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + +++ + + + LS D + ++ + + G+++ I F Sbjct: 30 LGQSVNLKYIAQKMQGYSSLSIGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVF 83 >gi|29346025|ref|NP_809528.1| hypothetical protein BT_0615 [Bacteroides thetaiotaomicron VPI-5482] gi|29337919|gb|AAO75722.1| putative non-specific DNA binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 172 Score = 34.1 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 6/54 (11%), Positives = 21/54 (38%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 + +++ + + + LS D + ++ + + G+++ I F Sbjct: 30 LGQSVNLKYIAQKMQGYSSLSIGDIKSVIQNFVEKMKEQLLEGKSVNIEGLGVF 83 >gi|150007648|ref|YP_001302391.1| hypothetical protein BDI_1003 [Parabacteroides distasonis ATCC 8503] gi|255013826|ref|ZP_05285952.1| hypothetical protein B2_07957 [Bacteroides sp. 2_1_7] gi|256839835|ref|ZP_05545344.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298375593|ref|ZP_06985550.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|149936072|gb|ABR42769.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256738765|gb|EEU52090.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298268093|gb|EFI09749.1| DNA-binding protein [Bacteroides sp. 3_1_19] Length = 161 Score = 34.1 bits (78), Expect = 6.1, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 15/81 (18%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEV-------KID 76 + + L + +G +KI TF + K V +++ I Sbjct: 50 EMEASLELLAKFVPQQLQQGHTVKIPGLGTFRLTFKSDGV-------EDINSFRANSMIK 102 Query: 77 PRRVVVFKASSILKKRIMDDM 97 R+V F S L++ ++ + Sbjct: 103 NVRIV-FTPSKELRESVLSGL 122 >gi|224539810|ref|ZP_03680349.1| hypothetical protein BACCELL_04720 [Bacteroides cellulosilyticus DSM 14838] gi|224518556|gb|EEF87661.1| hypothetical protein BACCELL_04720 [Bacteroides cellulosilyticus DSM 14838] Length = 165 Score = 34.1 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 14/100 (14%) Query: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF--HVKQKGSRVGRNLQT 69 +S+ G+ RK V+ L + + + G+++++ F F +K K + T Sbjct: 39 AKVSRLCGIHRKVVDLVVSGLVDMMAEDIDDGKSVQLGEFGIFRPTIKAKSA------DT 92 Query: 70 NQEVKIDPRRVV----VFKASSILKKRIMDDMRGRKCNKD 105 + V +V VF I ++ + + R D Sbjct: 93 AEGVT--ASNIVRKRIVFTPGKIFQRTLGEMSVTRSIPVD 130 >gi|206562867|ref|YP_002233630.1| putative histone-like protein [Burkholderia cenocepacia J2315] gi|198038907|emb|CAR54869.1| putative histone-like protein [Burkholderia cenocepacia J2315] Length = 149 Score = 34.1 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 53 TKASLATHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147 >gi|325528108|gb|EGD05311.1| DNA-binding protein BpH2 [Burkholderia sp. TJI49] Length = 118 Score = 34.1 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 22 TKASLATHIAERAAVEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 81 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 82 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 116 >gi|325297692|ref|YP_004257609.1| hypothetical protein Bacsa_0540 [Bacteroides salanitronis DSM 18170] gi|324317245|gb|ADY35136.1| hypothetical protein Bacsa_0540 [Bacteroides salanitronis DSM 18170] Length = 162 Score = 34.1 bits (78), Expect = 6.2, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 MS+++T VK I+ G SR V + + + + G +++ + F Sbjct: 27 MSESMTFDKFVKHIADHNGVYSRGTVQGVVLDMCECLVEMLLNGNKVQLGALGDF 81 >gi|259419130|ref|ZP_05743047.1| putative DNA-binding protein HU [Silicibacter sp. TrichCH4B] gi|259345352|gb|EEW57206.1| putative DNA-binding protein HU [Silicibacter sp. TrichCH4B] Length = 102 Score = 34.1 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 5/34 (14%), Positives = 15/34 (44%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA 40 + +L+ + G+ ++D V + + +S Sbjct: 11 KKELIDQVVARSGVKKRDVKPVVEAMLAVLGESI 44 >gi|189467576|ref|ZP_03016361.1| hypothetical protein BACINT_03966 [Bacteroides intestinalis DSM 17393] gi|189435840|gb|EDV04825.1| hypothetical protein BACINT_03966 [Bacteroides intestinalis DSM 17393] Length = 344 Score = 34.1 bits (78), Expect = 6.3, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 23/39 (58%) Query: 1 MSKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39 +S+ I R+DL K+I+ +S+ ++ + V N I ++ Sbjct: 231 LSQNIDRNDLAKAIANNTNMSKAEADKTVEQYMNLIDNA 269 >gi|290991622|ref|XP_002678434.1| predicted protein [Naegleria gruberi] gi|284092046|gb|EFC45690.1| predicted protein [Naegleria gruberi] Length = 547 Score = 34.1 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 16/82 (19%) Query: 35 EICDSAVRGEAIKISSFATFHVKQKGSRVGRNL------QTNQEVKIDPRRVVVFKASSI 88 E+ +G I + SF + V + + +GRN ++ I+ R FK Sbjct: 361 EVFQELAKG-KIVVPSFGSESVVKGAAYLGRNPDKIACRRSKHAYGIESER--AFKFGK- 416 Query: 89 LKKRIMDDMRGRKCNKDDVTSP 110 DD + K + D P Sbjct: 417 ------DDEKRLKRIEGDSAEP 432 >gi|299144950|ref|ZP_07038018.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|298515441|gb|EFI39322.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 165 Score = 34.1 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 14/89 (15%) Query: 13 SISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFH--VKQKGSRVGRNLQTN 70 +S+ G+ RK V+ L +++ + G+++++ F F ++ K + + Sbjct: 40 KVSQLCGVHRKVVDLVVSGLVDKMAEDIDDGKSVQLGEFGIFSPTIRAKSA--------D 91 Query: 71 QEVKIDPRRVVV----FKASSILKKRIMD 95 E + + +V F I K + D Sbjct: 92 DEKDVSSKSIVQRKIIFYPGKIFKDTLED 120 >gi|289168088|ref|YP_003446357.1| type III restriction endonuclease [Streptococcus mitis B6] gi|288907655|emb|CBJ22492.1| type III restriction endonuclease [Streptococcus mitis B6] Length = 1025 Score = 34.1 bits (78), Expect = 6.5, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 17/28 (60%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFV 29 S+ +T+ DL+ I+ + GL+RK + Sbjct: 807 SQIMTKYDLLGEIADQTGLTRKLVAEIL 834 >gi|255965509|gb|ACU45059.1| major basic nuclear protein [Pfiesteria piscicida] Length = 102 Score = 34.1 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 26/60 (43%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +++T+ L +++S + + D ++ +T L + + + + A + K + Sbjct: 7 GQSLTKGGLAEALSAATEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 66 >gi|270295721|ref|ZP_06201921.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273125|gb|EFA18987.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 208 Score = 34.1 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 +T TR +L + I+ G S+ + + L + G ++KI F Sbjct: 23 GQTGTR-ELAEYIAMTSGFSKGVTEGVICELGEALAHEMGMGRSVKIEGLGVF 74 >gi|312874680|ref|ZP_07734702.1| hypothetical protein HMPREF9216_0017 [Lactobacillus iners LEAF 2053A-b] gi|311089783|gb|EFQ48205.1| hypothetical protein HMPREF9216_0017 [Lactobacillus iners LEAF 2053A-b] Length = 107 Score = 34.1 bits (78), Expect = 6.6, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 8/88 (9%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK--QKGSRVGR 65 SDL++ + +S+ + + + + + + + I F+ ++ + Sbjct: 17 SDLIRETAINLAISQVTAEKVIKEYIKVLKNHILVDDRTTIIGLGVFYQAFDRRKA---- 72 Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 NL++ + P + + FK S +L K+I Sbjct: 73 NLKSAAKTL--PYKSMRFKPSRMLNKQI 98 >gi|13474324|ref|NP_105892.1| hypothetical protein mll5186 [Mesorhizobium loti MAFF303099] gi|14025076|dbj|BAB51678.1| mll5186 [Mesorhizobium loti MAFF303099] Length = 305 Score = 34.1 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 17/33 (51%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39 ++ L + ++ GLS D+ V + ++ D+ Sbjct: 218 KTYLAQLVAARTGLSEADAKARVDAMVAKVEDA 250 >gi|37521991|ref|NP_925368.1| hypothetical protein gll2422 [Gloeobacter violaceus PCC 7421] gi|35212990|dbj|BAC90363.1| gll2422 [Gloeobacter violaceus PCC 7421] Length = 155 Score = 34.1 bits (78), Expect = 6.7, Method: Composition-based stats. Identities = 5/42 (11%), Positives = 18/42 (42%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISS 50 + + I+++ G+ ++ R + + ++ GE + Sbjct: 99 EFYERIAQKAGIDVAEAERRARAVVEVLTEAVSEGEMRDVRG 140 >gi|260593245|ref|ZP_05858703.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] gi|260534802|gb|EEX17419.1| putative non-specific DNA binding protein [Prevotella veroralis F0319] Length = 161 Score = 34.1 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 20/44 (45%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 K I+ E +S D +T L + D +G ++K+ +F Sbjct: 32 AKRIAAESTVSPADVRTVLTALGGVMGDYMSQGRSVKLDGVGSF 75 >gi|134037074|gb|ABO47877.1| histone-like protein [Alexandrium fundyense] Length = 107 Score = 34.1 bits (78), Expect = 6.8, Method: Composition-based stats. Identities = 6/60 (10%), Positives = 22/60 (36%) Query: 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 S +T+ L +++ + +KD + + ++ + + ++K + Sbjct: 12 STAMTKGALADAVATACEMKKKDVIKALASIAEIATAEVKKSGVFTLPGLFRIKSRKKPA 71 >gi|257469219|ref|ZP_05633313.1| hypothetical protein FulcA4_07747 [Fusobacterium ulcerans ATCC 49185] Length = 121 Score = 34.1 bits (78), Expect = 6.9, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 26/82 (31%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ + + I + + F TF K+ R ++ N R + F Sbjct: 36 EAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRKIYDIHKNSLYMTKERTALKF 95 Query: 84 KASSILKKRIMDDMRGRKCNKD 105 + + + + + + + Sbjct: 96 RVKNGFMEIVNKKVNNYGLSDE 117 >gi|167764215|ref|ZP_02436342.1| hypothetical protein BACSTE_02600 [Bacteroides stercoris ATCC 43183] gi|167698331|gb|EDS14910.1| hypothetical protein BACSTE_02600 [Bacteroides stercoris ATCC 43183] Length = 156 Score = 34.1 bits (78), Expect = 7.0, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 +T+ L + +SK + ++ L + I D G+++ I + TF Sbjct: 37 LTK--LAELLSKRSHFPQGMIMGILSELGDTIEDILSMGQSVTIPNLGTFQT 86 >gi|150005477|ref|YP_001300221.1| hypothetical protein BVU_2960 [Bacteroides vulgatus ATCC 8482] gi|149933901|gb|ABR40599.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 164 Score = 34.1 bits (78), Expect = 7.2, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 2 SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 S+ +T + IS +R D + + + + + G+ I++ TF + Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84 >gi|265750354|ref|ZP_06086417.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237250|gb|EEZ22700.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 164 Score = 34.1 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 2 SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 S+ +T + IS +R D + + + + + G+ I++ TF + Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84 >gi|212694979|ref|ZP_03303107.1| hypothetical protein BACDOR_04516 [Bacteroides dorei DSM 17855] gi|237710684|ref|ZP_04541165.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237727072|ref|ZP_04557553.1| conserved hypothetical protein [Bacteroides sp. D4] gi|294778678|ref|ZP_06744097.1| putative DNA-binding protein [Bacteroides vulgatus PC510] gi|319640700|ref|ZP_07995414.1| hypothetical protein HMPREF9011_01011 [Bacteroides sp. 3_1_40A] gi|212662539|gb|EEB23113.1| hypothetical protein BACDOR_04516 [Bacteroides dorei DSM 17855] gi|229433928|gb|EEO44005.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229455406|gb|EEO61127.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|294447334|gb|EFG15915.1| putative DNA-binding protein [Bacteroides vulgatus PC510] gi|317387662|gb|EFV68527.1| hypothetical protein HMPREF9011_01011 [Bacteroides sp. 3_1_40A] Length = 164 Score = 34.1 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 2 SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 S+ +T + IS +R D + + + + + G+ I++ TF + Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84 >gi|189459594|ref|ZP_03008379.1| hypothetical protein BACCOP_00220 [Bacteroides coprocola DSM 17136] gi|189433676|gb|EDV02661.1| hypothetical protein BACCOP_00220 [Bacteroides coprocola DSM 17136] Length = 125 Score = 34.1 bits (78), Expect = 7.3, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 26/112 (23%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQ 68 D+ + I + ++R D+ + L E+C GE +++ + V K Sbjct: 17 DMARRIQRRCTVTRADTLAVLVALEEEVCRGLCNGEIVRLGELGSLQVGVKS-------- 68 Query: 69 TNQEVKIDP--------RRVVVFKASSILK--------KRIMDDMRGRKCNK 104 + V+++ + V F+ +LK +R+ + K Sbjct: 69 --EGVRLEADFHESMINKIWVRFRPGMVLKGMLDGAAFERVSPRKEAGRAGK 118 >gi|189466102|ref|ZP_03014887.1| hypothetical protein BACINT_02472 [Bacteroides intestinalis DSM 17393] gi|189434366|gb|EDV03351.1| hypothetical protein BACINT_02472 [Bacteroides intestinalis DSM 17393] Length = 169 Score = 34.1 bits (78), Expect = 7.4, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 19/51 (37%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKG 60 + + + LS D + ++ + + G+ + I+ F + K Sbjct: 39 IAQKMQDRSSLSIGDIRSTMQNFVEKLKEQLLEGKTVNIAGLGVFMLAAKS 89 >gi|299146634|ref|ZP_07039702.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|298517125|gb|EFI41006.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] Length = 206 Score = 33.7 bits (77), Expect = 7.6, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 43/116 (37%), Gaps = 16/116 (13%) Query: 7 RSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 + + ++ +S + V + +E+ ++ G +++ F + K Sbjct: 34 KKEFLERVSHSSQTFNYNVIDAVVGIVIDELAEALSEGYVVELGELGHFSISLKC----- 88 Query: 66 NLQTNQEV---KIDPRRV----VVFKASSILKKRIMDDMRGRKCNKDDVTSPSGSY 114 T++ + +I + V + S K++I ++ + +K +S + Sbjct: 89 ---THKVMTKREIRAESICFDNVHLRTSKEFKRKIKREIELERVDKSKHSSQKVEF 141 >gi|325297251|ref|YP_004257168.1| hypothetical protein Bacsa_0082 [Bacteroides salanitronis DSM 18170] gi|324316804|gb|ADY34695.1| hypothetical protein Bacsa_0082 [Bacteroides salanitronis DSM 18170] Length = 164 Score = 33.7 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 MSKTITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++KT+T + VK I+ G +R V+ + + + G ++ TF Sbjct: 27 VTKTMTFDEFVKHIADHNGVFTRGTVKGVVSDTCACLVEMLLNGCKVQFGELGTF 81 >gi|294674546|ref|YP_003575162.1| DNA-binding protein [Prevotella ruminicola 23] gi|294472116|gb|ADE81505.1| putative DNA-binding protein [Prevotella ruminicola 23] Length = 182 Score = 33.7 bits (77), Expect = 7.8, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 15/113 (13%) Query: 7 RSDLVKSISKE---------FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT--FH 55 R DL +I+++ G+S I A G ++ + T F Sbjct: 26 RPDLYSAIAEKKVFTEAATHSGISAGVIKAAWEAAGAVIRTWATEGHSVPVPGLGTMRFG 85 Query: 56 VKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMDDMRGRKCNKDDVT 108 V+ K +++T I RR+V F S +K + + C +D T Sbjct: 86 VRAKAVEKLDDVKTG---LITTRRIV-FTPSVDVKDELKNTSIQITCLDEDGT 134 >gi|167836517|ref|ZP_02463400.1| hypothetical protein Bpse38_08516 [Burkholderia thailandensis MSMB43] Length = 25 Score = 33.7 bits (77), Expect = 8.0, Method: Composition-based stats. Identities = 6/25 (24%), Positives = 17/25 (68%) Query: 5 ITRSDLVKSISKEFGLSRKDSTRFV 29 + + +LV +++ G+S+ D+++ V Sbjct: 1 MNKQELVDAVAAGAGVSKSDASKTV 25 >gi|298377720|ref|ZP_06987671.1| non-specific DNA binding protein [Bacteroides sp. 3_1_19] gi|298265423|gb|EFI07085.1| non-specific DNA binding protein [Bacteroides sp. 3_1_19] Length = 147 Score = 33.7 bits (77), Expect = 8.1, Method: Composition-based stats. Identities = 5/46 (10%), Positives = 19/46 (41%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATF 54 ++ + +++E +S D + L + + ++ + +F Sbjct: 30 EVAERLARESTVSPADVHAVIRALPTVMAEIMAESRSVNLEGLGSF 75 >gi|37542956|gb|AAL61532.1| major basic nuclear protein [Pfiesteria piscicida] Length = 117 Score = 33.7 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS-R 62 ++T+ L +++S + + D ++ +T L + + + + A + K + + Sbjct: 24 SLTKGGLAEALSAAADVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKATK 83 Query: 63 VGRNLQTNQEVKI---DPRRVVVFKASSILKKRI 93 G+ + I R VV + +K+ + Sbjct: 84 AGKREMFGKIFVIKARPARTVVKAFPVAAIKQAV 117 >gi|329955617|ref|ZP_08296525.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] gi|328526020|gb|EGF53044.1| putative DNA-binding protein [Bacteroides clarus YIT 12056] Length = 154 Score = 33.7 bits (77), Expect = 8.2, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%) Query: 9 DLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL 67 DL + + G+ R + L + + + +G ++++ F F R G N Sbjct: 36 DLCDEV-TKVGMAPRGVVKMVLDGLIDTLNININKGFSVQLGDFGCF-------RPGINA 87 Query: 68 QT---NQEVKIDP--RRVVVFKASSILKKRIMDDMRGRKCNKDDVTSPSG 112 ++ ++VK D RR ++F K+ + R ++ T+ G Sbjct: 88 KSQDKQEDVKSDTVYRRKIIFTPGQYFKEMLTRASVTRANWENSETTSGG 137 >gi|303235665|ref|ZP_07322272.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] gi|302484112|gb|EFL47100.1| putative DNA-binding protein [Prevotella disiens FB035-09AN] Length = 144 Score = 33.7 bits (77), Expect = 8.4, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 23/46 (50%) Query: 11 VKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 V I +E LS D + + +L + D+ G+++ ++ +F + Sbjct: 38 VDRIVRETSLSAGDVSNALISLGAIVRDALELGQSVDLADLGSFRI 83 >gi|21674641|ref|NP_662706.1| hypothetical protein CT1827 [Chlorobium tepidum TLS] gi|21647844|gb|AAM73048.1| hypothetical protein CT1827 [Chlorobium tepidum TLS] Length = 387 Score = 33.7 bits (77), Expect = 8.9, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 7 RSDL---VKSISK-EFGLSRKDSTRFVTTLFNEICDSAVRG-EAIKISSFATFHV 56 R +L + I+ G+ ++ R E+ ++ +G ++ F +F + Sbjct: 124 RKELTGDAERIASVRLGMEASEARRLAKA-LGELFEAMKKGTGRFELRGFGSFTL 177 >gi|291613608|ref|YP_003523765.1| prophage CP4-57 regulatory [Sideroxydans lithotrophicus ES-1] gi|291583720|gb|ADE11378.1| prophage CP4-57 regulatory [Sideroxydans lithotrophicus ES-1] Length = 191 Score = 33.7 bits (77), Expect = 9.0, Method: Composition-based stats. Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 61 SRVGRNLQTNQEVKIDPRR 79 +R+GRN T +KI + Sbjct: 162 ARIGRNPITGATIKIKSTK 180 >gi|260175007|ref|ZP_05761419.1| hypothetical protein BacD2_24336 [Bacteroides sp. D2] gi|315923240|ref|ZP_07919480.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697115|gb|EFS33950.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 152 Score = 33.7 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 10 LVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNL-- 67 L +++ G+ R + + + G +++ F +F R N Sbjct: 28 LCNEVNQRTGIHRAMVDVILKGAEDTMITFLEEGFSVRFGEFGSF-------RPAINAAS 80 Query: 68 QTNQEVKIDP---RRVVVFKASSILK 90 + +E RR +VF + K Sbjct: 81 KDKEEDVNAATIIRRKIVFTPGTKFK 106 >gi|254884022|ref|ZP_05256732.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254836815|gb|EET17124.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 164 Score = 33.7 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 2 SKTITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVK 57 S+ +T + IS +R D + + + + + G+ I++ TF + Sbjct: 28 SEIMTLDKFAEHISTHGSKYNRADIQAVLIQAVDCMREQLLAGQRIQMGDLGTFSIH 84 >gi|112253281|gb|ABI14228.1| major basic nuclear protein [Pfiesteria piscicida] Length = 111 Score = 33.7 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGS 61 +IT+ L +IS E + + D ++ +T L + + + + A + K + Sbjct: 18 SITKGGLADAISAETEVKKSDCSKVLTALAEVVAKEVKKTGKVIVPGIARIVTRTKKA 75 >gi|107026732|ref|YP_624243.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054] gi|170735932|ref|YP_001777192.1| histone family protein DNA-binding protein [Burkholderia cenocepacia MC0-3] gi|105896106|gb|ABF79270.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054] gi|169818120|gb|ACA92702.1| histone family protein DNA-binding protein [Burkholderia cenocepacia MC0-3] Length = 149 Score = 33.7 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 53 TKASLATHIAERAAVEVKAVKAVLVALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147 >gi|78062953|ref|YP_372861.1| histone-like DNA-binding protein [Burkholderia sp. 383] gi|77970838|gb|ABB12217.1| Histone-like DNA-binding protein [Burkholderia sp. 383] Length = 149 Score = 33.7 bits (77), Expect = 9.1, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSA-VRG-EAIKISSFATFH---VKQKG 60 T++ L I++ + K + L N + S +G + V K Sbjct: 53 TKASLATHIAERAAVEVKAVKAVLVALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAKK 112 Query: 61 SRVGRNLQTNQEVKIDPRRV---VVFKASSILKKR 92 R G++ T +E + V +A LK Sbjct: 113 KRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147 >gi|317063466|ref|ZP_07927951.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313689142|gb|EFS25977.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 106 Score = 33.7 bits (77), Expect = 9.2, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 26/82 (31%) Query: 24 DSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 ++ + + I + + F TF K+ R ++ N R + F Sbjct: 21 EAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRKIYDIHKNSLYMTKERTALKF 80 Query: 84 KASSILKKRIMDDMRGRKCNKD 105 + + + + + + + Sbjct: 81 RVKNGFMEIVNKKVNNYGLSDE 102 >gi|265755674|ref|ZP_06090295.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234280|gb|EEZ19873.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 344 Score = 33.7 bits (77), Expect = 9.3, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 19/33 (57%) Query: 7 RSDLVKSISKEFGLSRKDSTRFVTTLFNEICDS 39 R+DL K+I+ LS+ ++ + V N I ++ Sbjct: 237 RNDLAKAIANNTNLSKPEADKMVEQYMNLIDNA 269 >gi|189459607|ref|ZP_03008392.1| hypothetical protein BACCOP_00233 [Bacteroides coprocola DSM 17136] gi|189433689|gb|EDV02674.1| hypothetical protein BACCOP_00233 [Bacteroides coprocola DSM 17136] Length = 136 Score = 33.7 bits (77), Expect = 9.4, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 22/48 (45%) Query: 9 DLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHV 56 ++ I + ++R D+ + +L + D GE +++ +F + Sbjct: 38 EMADRIQQMCTVTRADTMAVLISLGTVMRDGLCAGEIVRLGDLGSFQI 85 >gi|34558250|ref|NP_908065.1| excinuclease ABC subunit B [Wolinella succinogenes DSM 1740] gi|81832798|sp|Q7M806|UVRB_WOLSU RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName: Full=Excinuclease ABC subunit B gi|34483969|emb|CAE10965.1| EXINUCLEASE ABC SUBUNIT B [Wolinella succinogenes] Length = 658 Score = 33.7 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 8 SDLVKSISKEFGL-----SRKDSTRFVTTLFNEICDSAVRGEAIKIS 49 + + + I + GL +DS V LF+EI RGE + I+ Sbjct: 408 AQIAEQIVRPTGLLDPLYEVRDSQNQVAALFDEIKAVVARGERVLIT 454 >gi|84503009|ref|ZP_01001111.1| hypothetical protein OB2597_04273 [Oceanicola batsensis HTCC2597] gi|84388754|gb|EAQ01625.1| hypothetical protein OB2597_04273 [Oceanicola batsensis HTCC2597] Length = 125 Score = 33.7 bits (77), Expect = 9.8, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV--GR 65 DL+ +++ GL R + ++ + +G A+ + +K K ++ GR Sbjct: 39 KDLLAAVTDAGGLKRSKVRAVTEEVLRQLGVALGQGRAVSLPGLG--KIKTKRAKTVGGR 96 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.195 0.647 Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,811,062,570 Number of Sequences: 14124377 Number of extensions: 163728830 Number of successful extensions: 416223 Number of sequences better than 10.0: 5047 Number of HSP's better than 10.0 without gapping: 8075 Number of HSP's successfully gapped in prelim test: 467 Number of HSP's that attempted gapping in prelim test: 406569 Number of HSP's gapped (non-prelim): 8587 length of query: 114 length of database: 4,842,793,630 effective HSP length: 81 effective length of query: 33 effective length of database: 3,698,719,093 effective search space: 122057730069 effective search space used: 122057730069 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 77 (33.7 bits)