RPSBLAST alignment for GI: 254780496 and conserved domain: TIGR00988

>gnl|CDD|130061 TIGR00988, hip, integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU. Length = 94
 Score = 57.6 bits (139), Expect = 8e-10
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 5  ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
          +T+S+L++ I+ +   L  KD    V T+   +  +  +G+ I+I  F +F +  +  R 
Sbjct: 1  MTKSELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFGSFSLHYRAPRT 60

Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
          GRN +T   V++D + V  FK    L+ R 
Sbjct: 61 GRNPKTGDSVELDGKYVPHFKPGKELRDRA 90