RPSBLAST alignment for GI: 254780496 and conserved domain: TIGR00988
>gnl|CDD|130061 TIGR00988, hip, integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU. Length = 94
Score = 57.6 bits (139), Expect = 8e-10
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
+T+S+L++ I+ + L KD V T+ + + +G+ I+I F +F + + R
Sbjct: 1 MTKSELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFGSFSLHYRAPRT 60
Query: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
GRN +T V++D + V FK L+ R
Sbjct: 61 GRNPKTGDSVELDGKYVPHFKPGKELRDRA 90