RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780496|ref|YP_003064909.1| integration host factor
subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
(114 letters)
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit
(IHFA) {Escherichia coli [TaxId: 562]}
Length = 96
Score = 86.4 bits (214), Expect = 7e-19
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
+T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R G
Sbjct: 2 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 61
Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
RN +T +++ I RRVV F+ LK R+
Sbjct: 62 RNPKTGEDIPITARRVVTFRPGQKLKSRV 90
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Length = 90
Score = 84.5 bits (209), Expect = 2e-18
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R GR
Sbjct: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61
Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
N QT +E+KI V F + LK +
Sbjct: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 90
Score = 83.7 bits (207), Expect = 4e-18
Identities = 27/88 (30%), Positives = 56/88 (63%)
Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
+++L+ ++++ GLS+KD+T+ V +F+ I ++ +G+ +++ F F V+++ +R GR
Sbjct: 2 NKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGR 61
Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
N QT +E++I +V FK LK +
Sbjct: 62 NPQTGEEMEIPASKVPAFKPGKALKDAV 89
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId:
2336]}
Length = 90
Score = 82.5 bits (204), Expect = 8e-18
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
+ +L+ ++K+ G +KD + T+ I ++ +GE ++I F +F V++ +R G
Sbjct: 2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGV 61
Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
N QT + + I R+V FK LK+++
Sbjct: 62 NPQTRKPITIPERKVPKFKPGKALKEKV 89
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage
SPO1 [TaxId: 10685]}
Length = 99
Score = 82.2 bits (203), Expect = 1e-17
Identities = 20/88 (22%), Positives = 47/88 (53%)
Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
+++L+K+I+++ GL++ ++ + + I ++ +G+ ++++ F + +R G
Sbjct: 2 NKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKGF 61
Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
N QT + ++I P V K LKK
Sbjct: 62 NPQTQEALEIAPSVGVSVKPGESLKKAA 89
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Length = 94
Score = 81.0 bits (200), Expect = 2e-17
Identities = 19/88 (21%), Positives = 51/88 (57%)
Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
+ +LV +++++ +++K + +T I ++ G+ + + F +F +++ +R GR
Sbjct: 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGR 61
Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
N +TN++++I RV F A + ++++
Sbjct: 62 NPKTNEKMEIPATRVPAFSAGKLFREKV 89
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli,
beta-isoform [TaxId: 562]}
Length = 90
Score = 78.8 bits (194), Expect = 1e-16
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65
+S L+ I+ +S+ + R + + + +S G+ + + F TF VK++ +R GR
Sbjct: 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGR 61
Query: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93
N QT +E+ I +V F+A LK +
Sbjct: 62 NPQTGKEITIAAAKVPSFRAGKALKDAV 89
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB)
{Escherichia coli [TaxId: 562]}
Length = 94
Score = 75.7 bits (186), Expect = 9e-16
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 6 TRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVG 64
T+S+L++ ++ + + K V + + + +GE I I F +F + + R G
Sbjct: 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRTG 61
Query: 65 RNLQTNQEVKIDPRRVVVFKASSILKKRI 93
RN +T +V+++ + V FK L+ R
Sbjct: 62 RNPKTGDKVELEGKYVPHFKPGKELRDRA 90
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 25.5 bits (56), Expect = 1.2
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 53 TFHVKQKGSRVGRNLQTNQEVKIDPRRVV---VFKASSILKKRIMDDMRGRK 101
T+ + V +LQ + IDPR + V + + I+ + G+
Sbjct: 131 TYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNERALRNIVIGLGGKA 182
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId:
132475]}
Length = 70
Score = 22.5 bits (48), Expect = 9.2
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 12 KSISKEFGLSRKDSTRFVTTL 32
S+S +++K + + L
Sbjct: 28 ISLSNRLKINKKKINQQLYKL 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.355
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,750
Number of extensions: 14365
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 14
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)