HHsearch alignment for GI: 254780497 and conserved domain: TIGR01930

>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155 Two different types of thiolase , , are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=99.03  E-value=5.2e-10  Score=83.63  Aligned_cols=101  Identities=23%  Similarity=0.263  Sum_probs=85.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCCCCCC-CCCCCCHHHHHHCC-CCCCCCCCCCCCCHHHHHHHH
Q ss_conf             898899999999999999740-212354433665012233458-98531001122026-864444210122003467888
Q gi|254780497|r   47 GKDETTASLGEAAARDALHHA-EMSVDDIDLIIVATSTPDQTF-PSTAVNIQNRLGMK-RGFAFDMQAVCSGFVYAVTTA  123 (324)
Q Consensus        47 ~~~e~~~~la~~Aa~~al~~a-~~~~~~Id~ii~~s~~~~~~~-p~~a~~i~~~LGl~-~~~~~di~~~C~~~~~al~~A  123 (324)
T Consensus        19 ~~~~~a~dL~~~~i~~ll~r~p~l~~~~iD~vi~G~V~~~g~~g~~~aR~aaL~AGl~~~vpa~tvnr~CaSGl~Av~~a   98 (447)
T TIGR01930        19 LKDLSAEDLGAAVIKELLERNPGLDPELIDDVILGNVLQAGEQGQNIARQAALAAGLPESVPALTVNRQCASGLQAVALA   98 (447)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf             57878799999999999985368884672817761000577644148999998706898787344202324279999999


Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf             998964155653167630224322
Q gi|254780497|r  124 DSYIRSGVVRRVMVIGSDTFSRIV  147 (324)
Q Consensus       124 ~~li~~g~~~~~Lvv~~e~~S~~~  147 (324)
T Consensus        99 a~~I~~G~~d~~~AGGvEsMS~~P  122 (447)
T TIGR01930        99 AQKIRAGEADVVVAGGVESMSRVP  122 (447)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             988534850167860745446675