HHsearch alignment for GI: 254780497 and conserved domain: TIGR01930
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases; InterPro: IPR002155 Two different types of thiolase , , are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases ..
Probab=99.03 E-value=5.2e-10 Score=83.63 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=85.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCCCCCC-CCCCCCHHHHHHCC-CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 898899999999999999740-212354433665012233458-98531001122026-864444210122003467888
Q gi|254780497|r 47 GKDETTASLGEAAARDALHHA-EMSVDDIDLIIVATSTPDQTF-PSTAVNIQNRLGMK-RGFAFDMQAVCSGFVYAVTTA 123 (324)
Q Consensus 47 ~~~e~~~~la~~Aa~~al~~a-~~~~~~Id~ii~~s~~~~~~~-p~~a~~i~~~LGl~-~~~~~di~~~C~~~~~al~~A 123 (324)
T Consensus 19 ~~~~~a~dL~~~~i~~ll~r~p~l~~~~iD~vi~G~V~~~g~~g~~~aR~aaL~AGl~~~vpa~tvnr~CaSGl~Av~~a 98 (447)
T TIGR01930 19 LKDLSAEDLGAAVIKELLERNPGLDPELIDDVILGNVLQAGEQGQNIARQAALAAGLPESVPALTVNRQCASGLQAVALA 98 (447)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 57878799999999999985368884672817761000577644148999998706898787344202324279999999
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 998964155653167630224322
Q gi|254780497|r 124 DSYIRSGVVRRVMVIGSDTFSRIV 147 (324)
Q Consensus 124 ~~li~~g~~~~~Lvv~~e~~S~~~ 147 (324)
T Consensus 99 a~~I~~G~~d~~~AGGvEsMS~~P 122 (447)
T TIGR01930 99 AQKIRAGEADVVVAGGVESMSRVP 122 (447)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 988534850167860745446675