HHsearch alignment for GI: 254780497 and conserved domain: cd00751

>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.73  E-value=7.1e-17  Score=127.44  Aligned_cols=99  Identities=23%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9889999999999999974021235443366501223345898531001122026-864444210122003467888998
Q gi|254780497|r   48 KDETTASLGEAAARDALHHAEMSVDDIDLIIVATSTPDQTFPSTAVNIQNRLGMK-RGFAFDMQAVCSGFVYAVTTADSY  126 (324)
Q Consensus        48 ~~e~~~~la~~Aa~~al~~a~~~~~~Id~ii~~s~~~~~~~p~~a~~i~~~LGl~-~~~~~di~~~C~~~~~al~~A~~l  126 (324)
T Consensus        18 ~~~~~~~L~~~ai~~al~~agl~~~~Id~vi~G~~~~~g~g~n~aR~~al~aGlp~~vp~~tV~~aCaSG~~Ai~~A~~~   97 (386)
T cd00751          18 KDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQS   97 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf             88989999999999999984989899998999950666656639999999769998886588842216879999999741


Q ss_pred             HHHCCCCCCEEEEECCCCCC
Q ss_conf             96415565316763022432
Q gi|254780497|r  127 IRSGVVRRVMVIGSDTFSRI  146 (324)
Q Consensus       127 i~~g~~~~~Lvv~~e~~S~~  146 (324)
T Consensus        98 I~sG~~dvvla~GvEsmS~~  117 (386)
T cd00751          98 IAAGEADVVVAGGVESMSRA  117 (386)
T ss_pred             HCCCCCCEEEEECCCCCCCC
T ss_conf             10799778887244535657