HHsearch alignment for GI: 254780497 and conserved domain: cd00833
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.47 E-value=7.5e-13 Score=101.78 Aligned_cols=223 Identities=19% Similarity=0.208 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC----EEEEECCCCCCC--------------CC-----CCCCCHHHHHHCCCCCCCCCC
Q ss_conf 9999999999974021235443----366501223345--------------89-----853100112202686444421
Q gi|254780497|r 54 SLGEAAARDALHHAEMSVDDID----LIIVATSTPDQT--------------FP-----STAVNIQNRLGMKRGFAFDMQ 110 (324)
Q Consensus 54 ~la~~Aa~~al~~a~~~~~~Id----~ii~~s~~~~~~--------------~p-----~~a~~i~~~LGl~~~~~~di~ 110 (324)
T Consensus 89 rl~L~~a~eAl~dAG~~~~~~~~~r~GV~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~~~-Gp~~~v~ 167 (421)
T cd00833 89 RLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLR-GPSLTVD 167 (421)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCC
T ss_conf 999999999997528983464886349996666664788974275657853013543117999999996899-9600335
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC-CC----------C------CCCCC-CCCCCCCCCCCCEEEEECCCC
Q ss_conf 012200346788899896415565316763022-43----------2------22456-632323454431234402654
Q gi|254780497|r 111 AVCSGFVYAVTTADSYIRSGVVRRVMVIGSDTF-SR----------I------VDWSD-RSTCVLFGDGAGALILEGVEV 172 (324)
Q Consensus 111 ~~C~~~~~al~~A~~li~~g~~~~~Lvv~~e~~-S~----------~------~d~~d-~~~~~lfGDGAaA~ll~~~~~ 172 (324)
T Consensus 168 tACaSsl~Ai~~A~~~i~~G~~d~ai~Gg~~~~~~~~~~~~~~~~~~ls~~~~~rpFD~~~~G~v~gEGa~~lvLe~~~~ 247 (421)
T cd00833 168 TACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVVVLKRLSD 247 (421)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHH
T ss_conf 36279999999999998579943544120003158689999863578689998567888999865557513543687899
Q ss_pred CCCCCC--CCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 465434--454101232035555561775487654443320010320244455777777788889874001000121024
Q gi|254780497|r 173 KGSSMA--DTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVP 250 (324)
Q Consensus 173 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~~~ 250 (324)
T Consensus 248 A~~~g~~I~a~i~G~g~~~dg~~~~---------------~~~P~--------~~~~~~~~~~al~~agi~~~~i~yiea 304 (421)
T cd00833 248 ALRDGDRIYAVIRGSAVNQDGRTKG---------------ITAPS--------GEAQAALIRRAYARAGVDPSDIDYVEA 304 (421)
T ss_pred HHHCCCCEEEEEEEEEECCCCCCCC---------------CCCCC--------HHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9876994799998999806897778---------------88875--------668999999999972999441208997
Q ss_pred CCCCHHH-----HHHHHHHCCCCH---HHH-H-HHHHHHCCCHHHHHHHHHHH---HHHCCCC
Q ss_conf 4444158-----999999719787---673-3-65865193301269999999---9980688
Q gi|254780497|r 251 HQANWRI-----INSIVDKMKIPF---DKV-I-VTVDIHGNTSAASIPLALAV---AVKEGRV 300 (324)
Q Consensus 251 Hq~~~~~-----~~~~~~~lgl~~---e~~-~-~~~~~~Gn~~sas~~~~L~~---~~~~g~l 300 (324)
T Consensus 305 HgtgT~~gD~~E~~ai~~~f~~~~~~~~~~~v~S~Ks~~GH~~~AaG~~~~i~~~lal~~~~i 367 (421)
T cd00833 305 HGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVI 367 (421)
T ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 447686669999999999961257777863023543453433576799999999999855982