HHsearch alignment for GI: 254780497 and conserved domain: smart00825

>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.51  E-value=1.6e-13  Score=106.04  Aligned_cols=222  Identities=18%  Similarity=0.208  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCC----EEEEECCCCCCCC------------------CC-CCCCHHHHHHCCCCCCCCCCC
Q ss_conf             999999999974021235443----3665012233458------------------98-531001122026864444210
Q gi|254780497|r   55 LGEAAARDALHHAEMSVDDID----LIIVATSTPDQTF------------------PS-TAVNIQNRLGMKRGFAFDMQA  111 (324)
Q Consensus        55 la~~Aa~~al~~a~~~~~~Id----~ii~~s~~~~~~~------------------p~-~a~~i~~~LGl~~~~~~di~~  111 (324)
T Consensus        90 l~L~~a~~Al~dAG~~~~~l~~~r~GV~vG~~~~d~~~~~~~~~~~~~~~~~~~~~~s~~a~ris~~~~l~-Gp~~~vdt  168 (424)
T smart00825       90 LLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLR-GPSVTVDT  168 (424)
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCEEEECC
T ss_conf             99999999999739983565887438999751663777764175557852024531768999999985899-96351414


Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC-CC----------CC------CCCC-CCCCCCCCCCCCEEEEECCCCC
Q ss_conf             12200346788899896415565316763022-43----------22------2456-6323234544312344026544
Q gi|254780497|r  112 VCSGFVYAVTTADSYIRSGVVRRVMVIGSDTF-SR----------IV------DWSD-RSTCVLFGDGAGALILEGVEVK  173 (324)
Q Consensus       112 ~C~~~~~al~~A~~li~~g~~~~~Lvv~~e~~-S~----------~~------d~~d-~~~~~lfGDGAaA~ll~~~~~~  173 (324)
T Consensus       169 ACsSsl~Al~~A~~~i~~G~~D~alvGg~~~~~~p~~~~~~~~~~~lS~~g~~rpFD~~adG~v~gEGa~~lvLk~l~~A  248 (424)
T smart00825      169 ACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVVVLKRLSDA  248 (424)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf             72899999999999997699633001426673487899998615787999987557788998410476579974659999


Q ss_pred             CCCC--CCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             6543--44541012320355555617754876544433200103202444557777777888898740010001210244
Q gi|254780497|r  174 GSSM--ADTGILSTYLCSDGSYIDKLYVDGGPSTSRTVGCIRMEGKAVFKYAVEKAVELIEKVFDSTHLTIENIDWFVPH  251 (324)
Q Consensus       174 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~~~H  251 (324)
T Consensus       249 ~~~g~~Iya~I~G~~~~~dG~~~~---------------~~~P~~--------~~~~~~~~~Al~~a~i~p~~I~yieaH  305 (424)
T smart00825      249 LRDGDPILAVIRGSAVNQDGRSNG---------------LTAPSG--------PAQARLIRQALARAGVDPADVDYVEAH  305 (424)
T ss_pred             HHCCCCEEEEEECEEEECCCCCCC---------------CCCCCH--------HHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             876991799993437825898787---------------789998--------999999999999829896646879960


Q ss_pred             CCCHHH-----HHHHHHHCCCCH--HH-H-HH-HHHHHCCCHHHHHHHHHHH---HHHCCCC
Q ss_conf             444158-----999999719787--67-3-36-5865193301269999999---9980688
Q gi|254780497|r  252 QANWRI-----INSIVDKMKIPF--DK-V-IV-TVDIHGNTSAASIPLALAV---AVKEGRV  300 (324)
Q Consensus       252 q~~~~~-----~~~~~~~lgl~~--e~-~-~~-~~~~~Gn~~sas~~~~L~~---~~~~g~l  300 (324)
T Consensus       306 gtgt~~gD~~E~~al~~~f~~~~~~~~~~~igS~K~~~GH~~~AaG~~~lik~~lal~~~~i  367 (424)
T smart00825      306 GTGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTI  367 (424)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             36687779999999999962368877842520453442333777899999999999856970