Query         gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 364
No_of_seqs    153 out of 1524
Neff          5.7 
Searched_HMMs 39220
Date          Sun May 29 23:27:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780498.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG0416 PlsX Fatty acid/phosph 100.0       0       0  848.5  37.4  334   12-348     1-336 (338)
  2 PRK05331 putative glycerol-3-p 100.0       0       0  837.8  36.0  316   12-330     1-317 (317)
  3 TIGR00182 plsX fatty acid/phos 100.0       0       0  837.6  29.3  334   13-349     1-339 (344)
  4 PRK13845 putative glycerol-3-p 100.0       0       0  814.3  37.4  331    6-341    88-428 (437)
  5 pfam02504 FA_synthesis Fatty a 100.0       0       0  813.2  34.9  321   13-338     1-322 (322)
  6 PRK13846 putative glycerol-3-p 100.0       0       0  792.0  34.5  311   12-343     2-315 (316)
  7 PRK05632 phosphate acetyltrans 100.0 1.2E-27 2.9E-32  194.4  21.1  280    7-330   386-696 (702)
  8 PRK12862 malic enzyme; Reviewe 100.0 1.3E-27 3.3E-32  194.0  21.2  283    6-333   440-759 (761)
  9 PRK07232 malic enzyme; Reviewe 100.0 1.6E-27 4.1E-32  193.5  21.3  282    6-332   434-752 (753)
 10 PRK09653 eutD phosphotransacet 100.0 1.2E-26 3.1E-31  187.9  23.3  287    2-334     5-324 (324)
 11 pfam01515 PTA_PTB Phosphate ac 100.0 1.3E-26 3.3E-31  187.8  23.3  282    2-327     4-318 (319)
 12 PRK12861 malic enzyme; Reviewe 100.0 1.7E-26 4.2E-31  187.1  23.5  283    9-335   443-762 (762)
 13 COG0280 Pta Phosphotransacetyl  99.9   3E-24 7.7E-29  172.8  23.6  282    9-333    10-325 (327)
 14 TIGR00651 pta phosphate acetyl  99.9 8.3E-24 2.1E-28  170.0  17.8  255   27-325     9-319 (322)
 15 PRK11890 phosphate acetyltrans  99.9 2.3E-22 5.8E-27  161.0  24.4  268    8-334    18-306 (312)
 16 PRK05805 phosphate butyryltran  99.9 1.4E-21 3.6E-26  156.0  22.5  262   10-332    15-299 (301)
 17 PRK07742 phosphate butyryltran  99.9 2.2E-21 5.7E-26  154.7  22.4  260   10-332    13-298 (299)
 18 PRK08190 bifunctional enoyl-Co  99.5 6.6E-11 1.7E-15   88.7  24.1  247   27-334   187-460 (465)
 19 TIGR03270 methan_mark_4 putati  99.4 4.5E-11 1.1E-15   89.7  14.2  179   97-327     8-202 (202)
 20 PRK01909 pdxA 4-hydroxythreoni  99.3 6.3E-09 1.6E-13   76.2  21.1  280    8-335     1-327 (329)
 21 TIGR02706 P_butyryltrans phosp  99.2 1.8E-08 4.6E-13   73.3  18.8  248   10-328    11-292 (295)
 22 PRK05312 pdxA 4-hydroxythreoni  98.9 3.5E-06   9E-11   58.9  20.7  272   12-334     3-335 (336)
 23 PRK04607 consensus              98.8 1.2E-05 3.2E-10   55.4  23.5  272    9-334     2-330 (330)
 24 PRK02848 consensus              98.7 2.4E-05 6.1E-10   53.6  22.6  276    9-335     4-336 (341)
 25 PRK03367 consensus              98.7 1.5E-05 3.7E-10   55.0  19.5  267   13-334     5-328 (329)
 26 PRK03743 pdxA 4-hydroxythreoni  98.7 5.1E-06 1.3E-10   57.8  17.0  272   13-334     4-330 (333)
 27 PRK00232 pdxA 4-hydroxythreoni  98.7 1.7E-05 4.3E-10   54.6  19.2  271   14-334     6-332 (334)
 28 PRK04507 consensus              98.6   5E-05 1.3E-09   51.6  22.5  268   12-334     3-323 (323)
 29 PRK03877 consensus              98.5 3.6E-05 9.1E-10   52.5  16.0  268   14-332     4-327 (328)
 30 PRK02746 pdxA 4-hydroxythreoni  98.3 0.00032 8.1E-09   46.5  18.6  272   13-333     2-332 (332)
 31 PRK03371 pdxA 4-hydroxythreoni  98.3 0.00011 2.8E-09   49.5  14.5  267   14-331     4-326 (326)
 32 pfam04166 PdxA Pyridoxal phosp  98.2  0.0002 5.1E-09   47.8  15.2  238   41-328     7-299 (299)
 33 COG4002 Predicted phosphotrans  98.2 5.9E-06 1.5E-10   57.5   6.3  185   99-331    55-254 (256)
 34 COG1995 PdxA Pyridoxal phospha  97.9  0.0013 3.4E-08   42.6  14.5  282   12-335     3-330 (332)
 35 PRK03946 pdxA 4-hydroxythreoni  97.6  0.0042 1.1E-07   39.4  13.5  246   24-332    14-303 (304)
 36 TIGR02709 branched_ptb branche  95.9   0.047 1.2E-06   32.8   7.3  244   16-329     2-270 (271)
 37 TIGR02346 chap_CCT_theta T-com  86.4     1.2   3E-05   24.0   4.2  128  171-316   217-371 (554)
 38 pfam10941 DUF2620 Protein of u  84.2    0.96 2.5E-05   24.6   2.9   72   44-138     2-79  (117)
 39 pfam06506 PrpR_N Propionate ca  81.7     4.1 0.00011   20.6  13.3  139   96-333    22-167 (169)
 40 cd01844 SGNH_hydrolase_like_6   71.2       8 0.00021   18.8   6.7  115  107-243    31-159 (177)
 41 cd03334 Fab1_TCP TCP-1 like do  70.6     5.4 0.00014   19.8   3.4   68  181-253    82-149 (261)
 42 KOG1731 consensus               69.1     8.3 0.00021   18.7   4.1  168   48-231   171-357 (606)
 43 TIGR01133 murG undecaprenyldip  65.5      11 0.00027   18.0   9.3  191    8-214     1-222 (368)
 44 KOG3857 consensus               64.7      11 0.00028   17.9   8.2   88   11-116    38-136 (465)
 45 KOG4797 consensus               61.8     9.7 0.00025   18.2   3.3   44  313-356    39-82  (123)
 46 cd03414 CbiX_SirB_C Sirohydroc  60.5      13 0.00033   17.5   4.1   30  162-192    12-41  (117)
 47 cd01463 vWA_VGCC_like VWA Volt  59.3      14 0.00035   17.3   9.0   39   12-50     15-58  (190)
 48 COG0303 MoeA Molybdopterin bio  56.6      10 0.00026   18.1   2.7  103  150-265   146-266 (404)
 49 PRK00923 sirohydrochlorin coba  54.2      16 0.00042   16.8   4.2   12  200-211    18-29  (130)
 50 COG4518 Mu-like prophage FluMu  54.1     6.3 0.00016   19.4   1.2   39  184-228    38-76  (122)
 51 cd00128 XPG Xeroderma pigmento  48.3      20 0.00052   16.2   5.1   87   97-214   153-243 (316)
 52 COG0031 CysK Cysteine synthase  46.8      21 0.00054   16.1   3.0   30   95-124    48-80  (300)
 53 KOG0117 consensus               46.2      22 0.00056   16.0   3.0   18   95-112   180-197 (506)
 54 pfam09338 Gly_reductase Glycin  44.6      23 0.00059   15.8   6.1   32  300-331   300-333 (428)
 55 pfam01728 FtsJ FtsJ-like methy  43.6     6.3 0.00016   19.4  -0.1   72  150-247    23-101 (176)
 56 KOG1099 consensus               43.5      12  0.0003   17.7   1.3   16  101-116   109-124 (294)
 57 TIGR03675 arCOG00543 arCOG0178  41.7      16 0.00042   16.8   1.8   31  129-162   181-211 (630)
 58 TIGR03674 fen_arch flap struct  41.6      26 0.00066   15.6   3.9   94   97-214   155-256 (338)
 59 TIGR01448 recD_rel helicase, R  41.4      26 0.00066   15.5   4.3  189   34-251   473-686 (769)
 60 cd03812 GT1_CapH_like This fam  39.9      27  0.0007   15.4   5.7   44  181-224   186-231 (358)
 61 TIGR00378 cax calcium/proton e  39.6      26 0.00066   15.6   2.5   81  170-294    35-116 (363)
 62 cd01915 CODH Carbon monoxide d  39.4      28 0.00071   15.3   7.1   90  153-242   185-324 (613)
 63 PRK10802 peptidoglycan-associa  39.1      28 0.00072   15.3   5.2   16  186-201    99-114 (173)
 64 TIGR02826 RNR_activ_nrdG3 anae  36.5      31 0.00079   15.1   4.0   40   14-53     70-113 (165)
 65 COG1782 Predicted metal-depend  35.8      19 0.00049   16.4   1.4   13  150-162   205-217 (637)
 66 TIGR02768 TraA_Ti Ti-type conj  35.5      32 0.00082   15.0   2.5   16   42-57    529-544 (888)
 67 cd03794 GT1_wbuB_like This fam  35.4      32 0.00082   15.0   5.4   69  184-257   247-322 (394)
 68 pfam06874 FBPase_2 Firmicute f  35.2      32 0.00083   14.9   2.9   12  259-270   372-383 (641)
 69 PRK07048 serine/threonine dehy  33.8      13 0.00033   17.5   0.2   56   72-130    38-96  (321)
 70 cd00758 MoCF_BD MoCF_BD: molyb  33.3      35 0.00089   14.7   4.5   12  107-118    58-69  (133)
 71 COG5321 Uncharacterized protei  33.3      26 0.00066   15.6   1.7   28  226-253    98-125 (164)
 72 KOG1499 consensus               33.1      35 0.00089   14.7   3.1   78  150-249    62-141 (346)
 73 PRK10073 predicted glycosyl tr  33.1      35  0.0009   14.7   7.4   38  186-231    61-98  (329)
 74 COG0796 MurI Glutamate racemas  32.3      36 0.00092   14.6   9.2   96   28-158    19-121 (269)
 75 PRK03980 flap endonuclease-1;   31.6      37 0.00095   14.6   4.0   94   97-214   108-209 (295)
 76 PRK03343 transaldolase; Valida  31.6      18 0.00045   16.6   0.6   80   96-178    86-182 (370)
 77 pfam11725 AvrE Pathogenicity f  30.9      34 0.00088   14.8   2.0   35  282-316   968-1002(1771)
 78 COG1165 MenD 2-succinyl-6-hydr  30.7      31 0.00079   15.1   1.8   81   99-179    15-159 (566)
 79 cd03798 GT1_wlbH_like This fam  30.1      39   0.001   14.4   5.2   16  314-329   328-343 (377)
 80 PRK00726 murG N-acetylglucosam  30.0      39   0.001   14.4   9.6  105   12-124     1-110 (359)
 81 cd03416 CbiX_SirB_N Sirohydroc  29.9      40   0.001   14.4   4.1   24  190-213     4-27  (101)
 82 cd03796 GT1_PIG-A_like This fa  29.4      40   0.001   14.3   5.8   94  148-261   192-288 (398)
 83 COG3370 Uncharacterized protei  29.0      41   0.001   14.3   4.4   46   12-57      1-51  (113)
 84 TIGR00674 dapA dihydrodipicoli  28.8      30 0.00078   15.1   1.5   52  188-247   127-187 (288)
 85 PTZ00188 adrenodoxin reductase  28.8      35 0.00089   14.7   1.8   38    6-49     33-70  (506)
 86 cd03820 GT1_amsD_like This fam  28.7      42  0.0011   14.3   4.6   35  190-224   181-217 (348)
 87 TIGR01037 pyrD_sub1_fam dihydr  28.3      42  0.0011   14.2   2.9  195   17-261    65-294 (308)
 88 COG3933 Transcriptional antite  28.2      43  0.0011   14.2   2.2  160  106-292   107-296 (470)
 89 PRK13609 diacylglycerol glucos  27.9      43  0.0011   14.2   3.7   36   99-139    96-131 (388)
 90 PTZ00217 flap endonuclease-1;   27.8      43  0.0011   14.2   4.5   89   97-214   163-255 (394)
 91 pfam03853 YjeF_N YjeF-related   27.7      43  0.0011   14.1   5.7   66  175-246    46-111 (170)
 92 COG0119 LeuA Isopropylmalate/h  25.8      10 0.00026   18.1  -1.4   57  287-352   304-360 (409)
 93 cd05844 GT1_like_7 Glycosyltra  25.8      47  0.0012   13.9   6.4  130  106-249   141-288 (367)
 94 TIGR01431 adm_rel adenosine de  25.6      13 0.00034   17.4  -0.9   34  292-328   397-430 (486)
 95 TIGR01469 cobA_cysG_Cterm urop  24.8      49  0.0012   13.8   3.5   27  102-129   102-128 (242)
 96 PRK04163 exosome complex RNA-b  24.8      49  0.0012   13.8   5.3   60  284-348   166-227 (232)
 97 COG1083 NeuA CMP-N-acetylneura  24.4      50  0.0013   13.8   2.8  143   28-173    29-221 (228)
 98 TIGR01788 Glu-decarb-GAD gluta  24.0      36 0.00093   14.6   1.1   65   50-125    61-132 (493)
 99 TIGR02802 Pal_lipo peptidoglyc  23.4      52  0.0013   13.6   5.6   46   27-72     16-78  (104)
100 COG2820 Udp Uridine phosphoryl  23.2      52  0.0013   13.6   2.7   76   42-121    17-97  (248)
101 pfam05984 Cytomega_UL20A Cytom  23.2      40   0.001   14.3   1.2   21  226-246    60-80  (102)
102 cd04951 GT1_WbdM_like This fam  23.1      53  0.0013   13.6   5.2   57  190-246   191-255 (360)
103 PRK07409 threonine synthase; V  22.9      53  0.0014   13.6   3.5   40   82-125    56-97  (350)
104 PRK13306 ulaD 3-keto-L-gulonat  22.8      49  0.0013   13.8   1.6   33   11-51      4-37  (216)
105 PRK12404 stage V sporulation p  22.5      54  0.0014   13.5   5.4   57   95-151   115-171 (334)
106 PRK00550 rpsE 30S ribosomal pr  21.9      56  0.0014   13.5   2.8   33  301-333   112-144 (156)
107 PRK05638 threonine synthase; V  21.8      56  0.0014   13.4   3.3   42   82-127    91-134 (443)
108 KOG4411 consensus               21.7      55  0.0014   13.5   1.7   25  151-177   145-169 (292)
109 cd06303 PBP1_LuxPQ_Quorum_Sens  21.6      56  0.0014   13.4   5.4   29  105-133   102-130 (280)
110 cd03821 GT1_Bme6_like This fam  21.3      57  0.0015   13.4   4.8  111  185-329   232-344 (375)
111 KOG0362 consensus               21.2      58  0.0015   13.4   2.3   67  184-254   230-302 (537)
112 TIGR01885 Orn_aminotrans ornit  21.1      58  0.0015   13.3   5.1   67  164-249    84-151 (426)
113 pfam03719 Ribosomal_S5_C Ribos  20.9      58  0.0015   13.3   2.6   32  301-332    33-64  (74)
114 COG0205 PfkA 6-phosphofructoki  20.4      60  0.0015   13.3   5.1  109   11-126     1-117 (347)
115 KOG0816 consensus               20.3      57  0.0015   13.4   1.5   25   26-50     23-47  (223)
116 KOG4667 consensus               20.2      60  0.0015   13.2   5.7  145  184-332    31-227 (269)
117 KOG1205 consensus               20.1      61  0.0015   13.2   3.5   10  104-113    88-97  (282)

No 1  
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=100.00  E-value=0  Score=848.46  Aligned_cols=334  Identities=41%  Similarity=0.727  Sum_probs=325.7

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCCHHHHHHHHC
Q ss_conf             23999974687778177799999999857991799978989999998626975-15579977852017783067999713
Q gi|254780498|r   12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLL-KERSCFHHCEVSIAMDERPADALRRG   90 (364)
Q Consensus        12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~-~~ri~Ii~a~~vI~mde~P~~AlR~k   90 (364)
                      |+|||||+||||++|.++|+|+.+|++++++++|+||||+++|.++|++++.. .+|++|+||+++|+|||+|++|+|+|
T Consensus         1 ~~~IAiDaMGGD~~P~~vv~g~~~al~~~~~~~~iLvGd~~~i~~~L~~~~~~~~~~i~i~~a~~~I~m~d~p~~AvR~k   80 (338)
T COG0416           1 MIKIAIDAMGGDHGPEVVVPGALQALEEHPDLEIILVGDEDKIEPLLAKAPKLLRERIEIVHAEEVIEMDDKPSQALRKK   80 (338)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHCC
T ss_conf             94499862577768378899999999868993799977899989988416422100543786453015787889998727


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC-CCEEEEECCCCCCCCHHHHHHH
Q ss_conf             764279999999854995399970642678888875322556763220011055889-8459986132777898999999
Q gi|254780498|r   91 RNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVK-GKCIILDVGATIGSTVSHMVQL  169 (364)
Q Consensus        91 K~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~-g~~vllD~GAN~d~~~~~L~qf  169 (364)
                      |+ ||||+|+++||+|+||||||||||||+|+.+++++|||+||+||||+++|||.. +.+++||+|||+||+|+||+||
T Consensus        81 ~~-sSM~~A~~lVkeg~ADa~VSAGnTGAlma~a~~~lg~i~gI~RPAi~~~~Pt~~~~~~~~LDvGANvd~~~~~L~qf  159 (338)
T COG0416          81 KG-SSMRVALDLVKEGKADACVSAGNTGALMALALLKLGRIKGIDRPALATLLPTIDGGKTVVLDVGANVDCKPEHLVQF  159 (338)
T ss_pred             CC-CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf             88-57999999985676777984684699999999874547788855112544355798149996788788899999999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHH
Q ss_conf             99999999985689996589984045555565799999999740245713200234554532456838997551278899
Q gi|254780498|r  170 SILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAI  249 (364)
Q Consensus       170 A~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~L  249 (364)
                      |+||++|++.++++++|||||||||+||+||++++||||+||++..  .+||+||||||||++|.+||||||||||||+|
T Consensus       160 A~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~e~~kea~~lLk~~~--~~nF~GnvEg~di~~G~~DVvV~DGFtGNv~L  237 (338)
T COG0416         160 ALMGSAYAEKVLGIKNPRVGLLNIGTEEIKGNELVKEAYELLKETP--LINFIGNVEGRDILDGTVDVVVTDGFTGNVVL  237 (338)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCCEEEECCCCHHHHH
T ss_conf             9999999999628899967887565535458789999999997487--77536522542123687778995796018999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             99888899999999986322208899999989999999972696870874674216148983889986899999999999
Q gi|254780498|r  250 KAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHN  329 (364)
Q Consensus       250 Kt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~  329 (364)
                      ||+||+++++.++||+++++++++|++++++++.|+++++++||++||||+||||+|+|||+||+||+++|++||++|++
T Consensus       238 Kt~EG~a~~i~~~lK~~~~~s~~~klgall~k~~~k~lk~k~d~~~~~Ga~llGl~giViKsHGsad~~a~~~AI~~a~~  317 (338)
T COG0416         238 KTAEGTAKFILSLLKEEIKSSLKSKLGALLLKPALKRLKKKLDPSEYGGAVLLGLNGIVIKSHGSADARAFASAIRQAYE  317 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             98778999999999999887689999999875689999874886640982783167248971687578999999999999


Q ss_pred             HHHCCHHHHHHHHHHHHHH
Q ss_conf             9960706899999999987
Q gi|254780498|r  330 MSQNGFIDMVKDDMQRVRD  348 (364)
Q Consensus       330 ~~~~~~~~~i~~~~~~~~~  348 (364)
                      +++++++.+|+++++....
T Consensus       318 ~~~~~v~~~I~~~l~~~~~  336 (338)
T COG0416         318 MVKSQVPQRIEARLEKLLA  336 (338)
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9998789999999986435


No 2  
>PRK05331 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=100.00  E-value=0  Score=837.84  Aligned_cols=316  Identities=43%  Similarity=0.764  Sum_probs=309.6

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCC
Q ss_conf             23999974687778177799999999857991799978989999998626975155799778520177830679997137
Q gi|254780498|r   12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGR   91 (364)
Q Consensus        12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK   91 (364)
                      |||||||+||||++|+++|+|+..|++++|+++|+||||+++|++++++++.+.+|++|+||+++|+|+|+|+.|+|+||
T Consensus         1 mi~IAvDaMGGD~~P~~~v~Ga~~al~~~~d~~~~LvG~e~~i~~~l~~~~~~~~~i~iiha~~~V~m~d~p~~alR~kk   80 (317)
T PRK05331          1 MMKIAIDAMGGDFGPEVVVPGALQALKEHPDLEILLVGDEEKIKPLLAKYPALRERIEIVHASEVIGMDDKPSQALRRKK   80 (317)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf             95899996698767288999999999878897699995899999999857776357589989965667888899986168


Q ss_pred             CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHHHH
Q ss_conf             642799999998549953999706426788888753225567632200110558898-4599861327778989999999
Q gi|254780498|r   92 NVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQLS  170 (364)
Q Consensus        92 ~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~qfA  170 (364)
                      + ||||+|+++||+|++||+||||||||+|++++++|||+|||+||||+++|||.++ +++|||+|||+||+|++|+|||
T Consensus        81 ~-SSm~~ai~lvk~g~ada~VSaGnTGAl~a~a~~~l~~i~gi~RPaia~~~Pt~~~~~~~llD~GAN~~~~~~~L~qfA  159 (317)
T PRK05331         81 D-SSMRVALELVKEGEADACVSAGNTGALMAAALFVLGRLPGIDRPAIATILPTLNGGGTVLLDLGANVDCKPEHLVQFA  159 (317)
T ss_pred             C-CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             8-719999999866887789954738999999999861205877641011143579973799967747877989999999


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH
Q ss_conf             99999999856899965899840455555657999999997402457132002345545324568389975512788999
Q gi|254780498|r  171 ILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK  250 (364)
Q Consensus       171 ~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK  250 (364)
                      +||++|+|.++++++|||||||||+|++||++++|+||+||++++  .+||+|||||+|||+|.+||||||||||||+||
T Consensus       160 ~mGs~ya~~v~~i~~PrVgLLNiG~E~~KG~~~~k~a~~lL~~~~--~~nf~G~iEg~di~~g~~DVvV~DGFtGNv~LK  237 (317)
T PRK05331        160 VMGSVYAEAVLGIENPRVGLLNIGEEEIKGNELVKEAYELLKAAP--SINFIGNVEGRDILKGTADVVVCDGFVGNVALK  237 (317)
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCEEEECCCCCHHHHH
T ss_conf             999999998479999828761587656676799999999996499--980580104011468999789928950189999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             98888999999999863222088999999899999999726968708746742161489838899868999999999999
Q gi|254780498|r  251 AAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNM  330 (364)
Q Consensus       251 t~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~  330 (364)
                      |+||++++++++||+++++++++|++++++++.|++++++|||++|||||||||||+|||+||+|+++||+|||++|++.
T Consensus       238 t~EG~~~~~~~~lk~~~~~~~~~k~~~ll~~~~l~~~~~~~d~~~~gGA~lLGl~g~vik~HG~S~~~a~~~AI~~A~~~  317 (317)
T PRK05331        238 TSEGTAKMILSLLKEELKSSLLSKLGALLLKPALKRLKKKLDPREYGGAVLLGLNGIVIKSHGSSDAKAFKNAIRQAVEA  317 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             98779999999999998408899999999999999999866910229857974882289817899989999999999749


No 3  
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes . The plsX gene encodes a poorly understood enzyme of phospholipid metabolism .; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process.
Probab=100.00  E-value=0  Score=837.65  Aligned_cols=334  Identities=37%  Similarity=0.683  Sum_probs=325.0

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCC
Q ss_conf             39999746877781777999999998579917999789899999986269751557997785201778306799971376
Q gi|254780498|r   13 DTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRN   92 (364)
Q Consensus        13 ~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~   92 (364)
                      +|||||+|||||+|.++|+|++++++++.+++|+||||++.+.++|.+.+....+++++||+++|+|+|.|+.|+|||++
T Consensus         1 ~riavD~mGgD~~P~~~i~gv~~~~~~~~~l~~~LVGD~~~i~~~L~~~~~~~~~~~~~~A~~~I~m~~~p~~AiRRK~~   80 (344)
T TIGR00182         1 MRIAVDAMGGDHAPSEVIEGVLRYASENQDLSIILVGDKDAIEPLLDKLPKNQIKITIIHAQSVIEMTDTPVEAIRRKKN   80 (344)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCC
T ss_conf             92788706888884467889999875108723898337255536753032136617887146652666115477541410


Q ss_pred             CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC-C-CEEEEECCCCCCCCHHHHHHHH
Q ss_conf             4279999999854995399970642678888875322556763220011055889-8-4599861327778989999999
Q gi|254780498|r   93 VSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVK-G-KCIILDVGATIGSTVSHMVQLS  170 (364)
Q Consensus        93 ~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~-g-~~vllD~GAN~d~~~~~L~qfA  170 (364)
                       |||++|+++||||+||||||||||||+|+++.+.||||+|++||||++++||.. + ++++||+|||+||+|++|+|||
T Consensus        81 -sSm~~a~~lVkeg~ADa~iSAG~sGa~m~la~l~lGri~G~~rPA~~t~~Pt~~P~~~~~~LDvGAN~dc~p~~L~~fA  159 (344)
T TIGR00182        81 -SSMQVAMNLVKEGRADAVISAGNSGALMGLALLRLGRIKGIERPALVTLLPTVNPKDKFVLLDVGANVDCKPKYLVQFA  159 (344)
T ss_pred             -HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf             -2799999996269974899865389999998640454156766510142770118962699855567578843233441


Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH
Q ss_conf             99999999856899965899840455555657999999997402457132002345545324568389975512788999
Q gi|254780498|r  171 ILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK  250 (364)
Q Consensus       171 ~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK  250 (364)
                      +||++|+|.+.++++|||||||||+|+.||++++||||++|++.  ++|||+|||||||||+|.+||||||||+|||+||
T Consensus       160 lMG~vy~~~v~~~~sPkVgLLNiGeE~~KG~~l~~~t~~~Lk~~--~~inF~GnvE~rdlL~G~~DV~VcDGF~GNvvLK  237 (344)
T TIGR00182       160 LMGSVYAKKVLGVDSPKVGLLNIGEEDNKGNDLVKETFKLLKED--PNINFIGNVEARDLLDGVVDVLVCDGFTGNVVLK  237 (344)
T ss_pred             HHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEEECHHHHHCCCEEEEEECCCCCCHHHH
T ss_conf             01332111100058980562357650021356689999996228--8776065200054306864699843841315777


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH---CCCEEEEEECCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             988889999999998632220889999998999999997269687---08746742161489838899868999999999
Q gi|254780498|r  251 AAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRN---FNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIA  327 (364)
Q Consensus       251 t~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~---~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a  327 (364)
                      |+||+++.+.+++|+.++++|.+|+++++.++.|+++++|+||.+   ||||+|||||++|||+||+|+..+|.+||++|
T Consensus       238 t~EGv~~~i~~~lK~~~~~~~rskl~al~~~~~lK~~~~k~dy~nPdqygGA~L~Gl~~~viksHGss~~~a~~~AIrqA  317 (344)
T TIGR00182       238 TMEGVAKTILSILKDELKSKLRSKLAALLLKPILKSLKQKFDYANPDQYGGAVLLGLNKLVIKSHGSSDSRAIFSAIRQA  317 (344)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             66899999999987524876543789987212456786314636754348837761473178723741035799999999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             9999607068999999999876
Q gi|254780498|r  328 HNMSQNGFIDMVKDDMQRVRDS  349 (364)
Q Consensus       328 ~~~~~~~~~~~i~~~~~~~~~~  349 (364)
                      .+.++++++.+|+++++....+
T Consensus       318 ~~av~~qv~~~I~~~~~~~~p~  339 (344)
T TIGR00182       318 KEAVKSQVINRIKSSLESLKPA  339 (344)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999877999999988640343


No 4  
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=100.00  E-value=0  Score=814.34  Aligned_cols=331  Identities=33%  Similarity=0.551  Sum_probs=317.4

Q ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCC--------CCCEEEECCCCCC
Q ss_conf             11389823999974687778177799999999857991799978989999998626975--------1557997785201
Q gi|254780498|r    6 VLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLL--------KERSCFHHCEVSI   77 (364)
Q Consensus         6 ~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~--------~~ri~Ii~a~~vI   77 (364)
                      .-+++..+-||||+||||++|.++++||+.|+++.| +++++||++++|+..++++.+.        ..+++++|+.++|
T Consensus        88 ~i~~~~r~wiAvD~MGGD~aP~~i~~G~l~a~~~~~-~~i~~vg~~~~i~~~~~~~~~~e~~~~~~~~~~~~~v~s~~~i  166 (437)
T PRK13845         88 EISDSDRIWVAVDGMGGDYAPGPILEGCLQAISRLP-LNIKFVGEIEKVKEAAEALGLEELLEKAIDAGHLELIASGPSI  166 (437)
T ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf             235666069996057887786778899999998679-3599966779999999971606567765303757997179987


Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC--CCEEEEEC
Q ss_conf             7783067999713764279999999854995399970642678888875322556763220011055889--84599861
Q gi|254780498|r   78 AMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVK--GKCIILDV  155 (364)
Q Consensus        78 ~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~--g~~vllD~  155 (364)
                      .|+|+ ..|+|+||+ |||++|+++||+|+||||||||||||+|++++|+|||||||+||||+++|||.+  +++++||+
T Consensus       167 ~m~e~-a~AVRrKKd-SSi~vA~~LVK~G~AdA~vSAGNTGAlmA~a~~~Lgri~GI~RPAIa~~~Pt~~~g~~~llLD~  244 (437)
T PRK13845        167 GMDEE-ATAVRKKKD-ASINVAMDLVKKGKALAVYSAGNSGAMMASAIFRLGRLKGIDRPAIGALFPTKDPGQPVLVLDV  244 (437)
T ss_pred             CCCCH-HHHHHHCCC-CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHEECCCCCCCCCCCCEECCCCCCCCEEEEEEC
T ss_conf             87733-777760462-4899999998658776898368638999877611365799871410622676689973799978


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCC
Q ss_conf             32777898999999999999999856899965899840455555657999999997402457132002345545324568
Q gi|254780498|r  156 GATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFV  235 (364)
Q Consensus       156 GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~  235 (364)
                      |||+||+|+||+|||+||++|+|.++++++|||||||||+||.||++++|+||+||++.  ++|||+|||||+|||+|.+
T Consensus       245 GANvdckpe~L~QFAiMGsiYAk~Vlgi~~PrVGLLNIGeEe~KGnel~keA~~LLk~~--~~iNFiGNVEGrDI~~G~~  322 (437)
T PRK13845        245 GANMDCKPSYLHQFALLGNIYSRDVLQVKKPRIGLLNIGEEECKGNDLSLKTFELLSEE--KRFHFAGNCEGRDVLSGDF  322 (437)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC--CCCCEECCCCCCCCCCCCC
T ss_conf             85899898999999999999999960999985787645664555639999999998608--8973315544010357878


Q ss_pred             CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCC
Q ss_conf             38997551278899998888999999999863222088999999899999999726968708746742161489838899
Q gi|254780498|r  236 DVIVTEGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSS  315 (364)
Q Consensus       236 DVvV~DGFtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s  315 (364)
                      ||||||||||||+|||+||++++++++||+++++++++|++++++++.|+++++++||++|||||||||||+|||+||+|
T Consensus       323 DVVVcDGFtGNV~LKt~EG~a~~i~~~LK~~~~~s~~~Kigalllk~~Lk~lkkrlD~~eyGGApLLGlnGivIksHGsS  402 (437)
T PRK13845        323 DVVVCDGFTGNVLLKFLESVGSVLLDVLRAELPRGRRGKVGSAFLRSNLKRIKKRLDHAEHGGALLLGVNGICVIGHGSS  402 (437)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCEEEECCCC
T ss_conf             78995784018999987779999999999998747799999999999999998767900159966864785289807888


Q ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             86899999999999996070689999
Q gi|254780498|r  316 DAKSIFNVLGIAHNMSQNGFIDMVKD  341 (364)
Q Consensus       316 ~~~a~~~ai~~a~~~~~~~~~~~i~~  341 (364)
                      ++.||+|||+.|++++++++++.|.+
T Consensus       403 ~A~Ai~nAIrvA~~~a~hgv~d~l~~  428 (437)
T PRK13845        403 KALSVVSALRLAHSAASHGVMDDLAQ  428 (437)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             88999999999999997580889986


No 5  
>pfam02504 FA_synthesis Fatty acid synthesis protein. The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes. The exact function of the plsX protein in fatty acid synthesis is unknown.
Probab=100.00  E-value=0  Score=813.23  Aligned_cols=321  Identities=40%  Similarity=0.702  Sum_probs=312.1

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCC
Q ss_conf             39999746877781777999999998579917999789899999986269751557997785201778306799971376
Q gi|254780498|r   13 DTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRN   92 (364)
Q Consensus        13 ~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~   92 (364)
                      ||||||+||||++|+++|+|+..|++++|+++|+||||+++|.+++.+++. .+|++|+||+++|+|+|+|+.|+|+ |+
T Consensus         1 ikIAvDaMGGD~~P~~vv~Ga~~al~~~~~~~i~LvG~e~~i~~~l~~~~~-~~~i~iv~a~~~I~m~d~p~~a~Rk-k~   78 (322)
T pfam02504         1 LRIAIDAMGGDHGPLEVVKGVLLAAKSAQDLDIVLVGDKDAIDPLVKEAEL-NSKLTIVHAEGVIEMEDTPLAAIRK-KK   78 (322)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCC-CCCCEEEECCCCCCCCCCHHHHHHC-CC
T ss_conf             989998259875848899999999987889769999299999999851676-5681899688801689888999863-68


Q ss_pred             CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHHHHH
Q ss_conf             42799999998549953999706426788888753225567632200110558898-45998613277789899999999
Q gi|254780498|r   93 VSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQLSI  171 (364)
Q Consensus        93 ~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~qfA~  171 (364)
                       ||||+|+++||+|++|++||||||||+|+++++++||+|||+||||++.|||.+| +++|||+|||+||+|++|+|||+
T Consensus        79 -SSm~~a~~lvk~g~ada~vSaGnTGA~~a~a~~~l~~i~gi~RPai~~~~Pt~~g~~~~lLD~GANv~~~~~~L~qFA~  157 (322)
T pfam02504        79 -SSMAVAIDLVKEGEADAAVSAGNTGALMALAMLRLGRIKGITRPALGTELPTVNGKFTVLLDVGANVDCKPKELVQFAL  157 (322)
T ss_pred             -CCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf             -8199999997320378899537379999999998850058886446440455799758998478787779899999999


Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHH
Q ss_conf             99999998568999658998404555556579999999974024571320023455453245683899755127889999
Q gi|254780498|r  172 LGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA  251 (364)
Q Consensus       172 mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt  251 (364)
                      ||++|+|.++++++|||||||||+|++||++++||||+||++++  ++||+|||||+|||+|.+||||||||||||+|||
T Consensus       158 mG~~ya~~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~lL~~~~--~~nf~GnvEg~~i~~g~~DVvV~DGF~GNi~LKt  235 (322)
T pfam02504       158 MGSVYAQSLLGIDSPRVGLLNIGEEEVKGNDLHKQTFKLLKATP--GYNFLGNVEGRDILDGVVDVIVCDGFTGNVILKT  235 (322)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHH
T ss_conf             99999999729999808787556545465399999999998289--9844500130105789984899488400999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             88889999999998632220889999998999999997269687087467421614898388998689999999999999
Q gi|254780498|r  252 AEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMS  331 (364)
Q Consensus       252 ~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~  331 (364)
                      +||+++++++.||+++++++++|++++++++.|+++++++||++|||||||||||+|||+||+|++.||+|||++|.+++
T Consensus       236 ~EG~~~~i~~~lk~~~~~~~~~k~~~ll~~~~l~~~~~~~d~~~~gGa~llGl~g~vvk~HG~S~~~a~~naI~~a~~~~  315 (322)
T pfam02504       236 AEGVAKFIGSILKDELKRSKLSKLGALLLSKALKRLKKKFDYKEYGGAVLLGLSGLVIKSHGSADKTAIFAAIRQAIELV  315 (322)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             87899999999898852077889999999999999986389531198789758843897579999899999999999999


Q ss_pred             HCCHHHH
Q ss_conf             6070689
Q gi|254780498|r  332 QNGFIDM  338 (364)
Q Consensus       332 ~~~~~~~  338 (364)
                      ++++++|
T Consensus       316 ~~~~i~k  322 (322)
T pfam02504       316 QTGVIVR  322 (322)
T ss_pred             HHCCCCC
T ss_conf             8386679


No 6  
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=100.00  E-value=0  Score=791.99  Aligned_cols=311  Identities=29%  Similarity=0.512  Sum_probs=294.1

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf             239999746877781777999999998---57991799978989999998626975155799778520177830679997
Q gi|254780498|r   12 VDTISLDLMGGDLGARDLILGASKFLE---AHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALR   88 (364)
Q Consensus        12 m~kIAVDaMGGD~~P~~vi~Ga~~al~---~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR   88 (364)
                      .||||||+||||++|+++++++..++.   .+++++|+|+|+++.++++++.++. ..+++|+||+++|+|+|+|+.|+|
T Consensus         2 ~irIAvDaMGGD~aP~~vve~~~~al~~~~~~~~~~~~l~g~~~~~~~~l~~~~~-~~~~~iv~a~~vi~m~e~p~~alR   80 (316)
T PRK13846          2 KVQIGIDLMGGDHSPLVVWEVLGDVLLSSSSEQPVEFTVFASSEVHHQILSNSPL-SRSPKIIAAESFVSMEDSPLAAIR   80 (316)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCC-CCCCEEECCCCCCCCCCCHHHHHH
T ss_conf             4699997548888744389999999984501798499997789999998734753-468579808972089998899876


Q ss_pred             HCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf             13764279999999854995399970642678888875322556763220011055889845998613277789899999
Q gi|254780498|r   89 RGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQ  168 (364)
Q Consensus        89 ~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~q  168 (364)
                      + |+ ||||+|+++||+|++||+||||||||+|++++++|||++||+||||+++|||.+|+++|||+|||+||+|+||+|
T Consensus        81 k-k~-sSm~~a~~lvk~g~ada~VSaGnTGA~ma~a~~~lg~i~gv~RPaia~~~Pt~~g~~~lLD~GANvd~~p~~L~q  158 (316)
T PRK13846         81 K-KS-SSMALGLDYLQEDKLDAFISTGNTAALVTLARAKIPMFPAVPRPALLVSVPTMRGFAVILDVGANVSVNPEEMVG  158 (316)
T ss_pred             C-CC-CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf             4-76-589999999976898889965737999999999870326987454533230789977999789787669999999


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHH
Q ss_conf             99999999998568999658998404555556579999999974024571320023455453245683899755127889
Q gi|254780498|r  169 LSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIA  248 (364)
Q Consensus       169 fA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~  248 (364)
                      ||+||++|+|.++++++|||||||||+|++||++++||||+||++..  .+||+|||||+|||+|++||||||||||||+
T Consensus       159 FA~MGs~ya~~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~--~~nF~GnvEg~di~~g~~DVvV~DGFtGNv~  236 (316)
T PRK13846        159 FARMGLAYRQCLGSNQPPTIGLLNIGSEERKGTEAHRQTFRMLRETF--GSAFLGNIESGDVFSGKVDIVVTDGFTGNIF  236 (316)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCCEEEECCCHHHHH
T ss_conf             99999999998469999869986256645465899999999986086--6663665341325799984899288431999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99988889999999998632220889999998999999997269687087467421614898388998689999999999
Q gi|254780498|r  249 IKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH  328 (364)
Q Consensus       249 LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~  328 (364)
                      |||+||+++++.++|++.+.                +.+++++||++|||||||||||+||||||+|+++||+|||++|.
T Consensus       237 LKt~EG~~~~l~~~l~~~l~----------------~~~k~~~d~~~ygGA~LLGl~Givvk~HGsS~~~a~~nAI~~a~  300 (316)
T PRK13846        237 LKTAEGVFDFLRHILGDKLE----------------KDIKRQLDYTIYPGSIVCGLSKLVIKCHGKACGTSLFGGISGSI  300 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------HHHHHHCCHHHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf             99887899999999999999----------------99987558312699888707843897589999899999999999


Q ss_pred             HHHHCCHHHHHHHHH
Q ss_conf             999607068999999
Q gi|254780498|r  329 NMSQNGFIDMVKDDM  343 (364)
Q Consensus       329 ~~~~~~~~~~i~~~~  343 (364)
                      ++++++++++|++++
T Consensus       301 ~~~~~~v~~kI~~~l  315 (316)
T PRK13846        301 DLARARVCSRILSRL  315 (316)
T ss_pred             HHHHHCHHHHHHHHC
T ss_conf             999967789999862


No 7  
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.96  E-value=1.2e-27  Score=194.37  Aligned_cols=280  Identities=16%  Similarity=0.131  Sum_probs=211.8

Q ss_pred             CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC-CCEEEECCCCCCCCCCHHHH
Q ss_conf             13898239999746877781777999999998579917999789899999986269751-55799778520177830679
Q gi|254780498|r    7 LQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLK-ERSCFHHCEVSIAMDERPAD   85 (364)
Q Consensus         7 ~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~-~ri~Ii~a~~vI~mde~P~~   85 (364)
                      +......||.+ .=|.   -.-++.+|...+++. -.+.+|+|+++.|+...++.++.. +.++|+++.+.-+---....
T Consensus       386 ~Ar~~~krIVl-pEg~---d~rvl~Aa~~~~~~g-ia~~iLlG~~~~i~~~~~~~gl~l~~~~~iidp~~~~~~y~~~~~  460 (702)
T PRK05632        386 RARAAKKRIVL-PEGD---EPRTLKAAAICAERG-IADCVLLGNPEEIRRVAAAQGVDLPDGLEIIDPEEVRERYVAPLV  460 (702)
T ss_pred             HHHHCCCEEEE-CCCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf             99747987996-7989---869999999999869-805999789999999999759997579889897157999999999


Q ss_pred             HHHHCCCCH----------HHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEE
Q ss_conf             997137642----------79999999854995399970--642678888875322556763220011055889845998
Q gi|254780498|r   86 ALRRGRNVS----------SMWRAIEAVKKNQAASVVTA--GNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIIL  153 (364)
Q Consensus        86 AlR~kK~~S----------Sm~~a~~lvk~g~aDa~VSa--GnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vll  153 (364)
                      .+|++|+.+          ..|.|.+||+.|+|||+||.  .+|..++.+++.++|+-||+...+-+.+|-..++..++-
T Consensus       461 ~lr~~kG~t~~~A~~~~~~~~~fg~mmv~~g~aDg~vsG~~~tt~~~irpalqii~~~pg~~~vss~f~m~~~~~~l~~~  540 (702)
T PRK05632        461 ELRKHKGLTEEVAREQLEDNVVLGTMMLALGEVDGLVSGAVHTTANTIRPALQLIKTAPGSSLVSSVFFMLLPDQVLVYG  540 (702)
T ss_pred             HHHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEE
T ss_conf             99730898999999986074038999986489887940667680777756887647789984368899999579438996


Q ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCC--CHHHHHHHHHHHHCCCCCCCEECCCCH---
Q ss_conf             613277789899999999999999985689996589984045-55556--579999999974024571320023455---
Q gi|254780498|r  154 DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGT-EEIKG--NDVLQESARLLRGECCGAFKYKGFIEA---  227 (364)
Q Consensus       154 D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~-E~~KG--~~~~kea~~LL~~~~~~~~nF~GniEg---  227 (364)
                      ||+.|+||++|+|+++|++.+..++. ||++ |||+|||.-+ .+++|  .+.+++|.+++++.. ++|.+-|-+-.   
T Consensus       541 Dc~vn~~P~aeqLa~IA~~sa~~a~~-fgi~-PrvAmLS~St~~s~~~~~~~kv~~A~~~~~~~~-pdl~idGe~q~DaA  617 (702)
T PRK05632        541 DCAINPDPTAEQLAEIAIQSADSAAA-FGIE-PRVAMLSYSTGTSGSGADVEKVREATRLARERR-PDLLIDGPLQYDAA  617 (702)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHH-CCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEECCCCCCCEE
T ss_conf             03025897999999999999999998-1999-609997356899999942589999999999868-99876146523100


Q ss_pred             -----------HHCCCCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             -----------453245683899755-12788999988889999999998632220889999998999999997269687
Q gi|254780498|r  228 -----------NDIAKGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRN  295 (364)
Q Consensus       228 -----------~~i~~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~  295 (364)
                                 .--..|.++|+|.-. =+|||..|..+-.+                                   +.. 
T Consensus       618 ~~~~v~~~k~p~s~v~g~AnvlifP~L~~gNi~yk~~qr~~-----------------------------------~~~-  661 (702)
T PRK05632        618 VDPSVARSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSA-----------------------------------GAV-  661 (702)
T ss_pred             CCHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHC-----------------------------------CCE-
T ss_conf             58999996686897789883898999754669999999963-----------------------------------987-


Q ss_pred             CCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             08746742161489838899868999999999999
Q gi|254780498|r  296 FNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNM  330 (364)
Q Consensus       296 ~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~  330 (364)
                      .-|.+|.|+++||-.-..++...-|.|++-.+.--
T Consensus       662 aiGPil~Gl~kPv~~lsrg~~v~dIvn~~aitaiq  696 (702)
T PRK05632        662 SIGPMLQGLRKPVNDLSRGALVDDIVYTIALTAIQ  696 (702)
T ss_pred             EECHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             87637666585275569999789999999999999


No 8  
>PRK12862 malic enzyme; Reviewed
Probab=99.96  E-value=1.3e-27  Score=194.04  Aligned_cols=283  Identities=16%  Similarity=0.196  Sum_probs=220.4

Q ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCC---CEEEECCCCCCCCCCH
Q ss_conf             1138982399997468777817779999999985799179997898999999862697515---5799778520177830
Q gi|254780498|r    6 VLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKE---RSCFHHCEVSIAMDER   82 (364)
Q Consensus         6 ~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~---ri~Ii~a~~vI~mde~   82 (364)
                      .+...+..||.+ +=|-   -.-++++|..++++. -.+.+|+|+++.|+..++++++..+   .++|+++.+.-..+ +
T Consensus       440 erAK~~PKRIVF-aEGE---DeRVLrAA~~~~~EG-Ia~PILlG~~~~I~~~a~~lGL~L~~~~~ieIIdP~~s~~~~-~  513 (761)
T PRK12862        440 AAAKAAPKRVVF-AEGE---DERVLRAAQVVVDEG-LAKPILIGRPAVIEARIERAGLRLRPGQDFEVVNPEDDPRYR-D  513 (761)
T ss_pred             HHHHHCCCEEEE-CCCC---CHHHHHHHHHHHHCC-CCCEEEECCHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHH-H
T ss_conf             999748866983-5887---778999999999759-961699679999999999869997767784456877458999-9


Q ss_pred             HHH---HHHHCCCC-----------HHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             679---99713764-----------27999999985499539997--064267888887532255676322001105588
Q gi|254780498|r   83 PAD---ALRRGRNV-----------SSMWRAIEAVKKNQAASVVT--AGNTGALIAMARLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        83 P~~---AlR~kK~~-----------SSm~~a~~lvk~g~aDa~VS--aGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                      ...   .+|++|+.           ...+.|.+||+.|+|||+||  .++|+..+..++.++|+.||+.+.+-+.+|-++
T Consensus       514 Y~~~l~elrqRKG~t~~~A~~~mr~d~nyFaAmMV~~GdADgmVsG~~~sya~tLRpalqIIg~~pG~~~vSs~~imi~~  593 (761)
T PRK12862        514 YWDTYHALMGRKGVTPELARREVRRRTTLIGAMMVKRGEADAMICGTEGRYERHLEFVLQVIGKRPGVRVYAAMSLLILP  593 (761)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEC
T ss_conf             99999999864599999999998508404888898758888782388878799999999973679998158999999928


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             9845998613277789899999999999999985689996589984---0455555657999999997402457132002
Q gi|254780498|r  147 KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKG  223 (364)
Q Consensus       147 ~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~G  223 (364)
                      ++..++.||+.|++|++|+|+++|++.+..+|. ||++ |||+|||   .|+-.+.-.+.+++|.+++++.. ++|.|-|
T Consensus       594 ~g~lF~ADt~Vn~~PtAEqLAdIAi~aA~~ar~-fGie-PRVAmLSfSnfGS~~~~~~~KVreA~~il~er~-Pdl~vDG  670 (761)
T PRK12862        594 GRTLFLADTHVNEDPTAEELAEITILAAEEVRR-FGIE-PKVALLSHSNFGSSDSPSARKMREALEILRERA-PDLEVDG  670 (761)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEC
T ss_conf             960899626566797999999999999999998-3998-506888147778999963799999999999768-9988832


Q ss_pred             CCCHH--------------HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             34554--------------532456838997551-278899998888999999999863222088999999899999999
Q gi|254780498|r  224 FIEAN--------------DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVK  288 (364)
Q Consensus       224 niEg~--------------~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~  288 (364)
                      -.-.+              --+.|.++|+|.=.. +|||..|..+-+.                                
T Consensus       671 EMQ~DaAL~~~v~~~k~P~S~LaG~ANVLIFPnLdAaNIaYKLlqrlg--------------------------------  718 (761)
T PRK12862        671 EMHGDAALDEELRKRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAA--------------------------------  718 (761)
T ss_pred             CCCHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHC--------------------------------
T ss_conf             674746549999995484896788893898899607789999999962--------------------------------


Q ss_pred             HHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             726968708746742161489838899868999999999999960
Q gi|254780498|r  289 EGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN  333 (364)
Q Consensus       289 ~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~  333 (364)
                         +...+ |.+|+|++++|-.-.-++++..|.|..-.+.--+++
T Consensus       719 ---ga~aI-GPIL~GL~kPV~~Lsrg~Sv~dIvNmaAIaavdAqa  759 (761)
T PRK12862        719 ---GALAV-GPILLGAAKPVHILTPSATVRRIVNMTALAVADANA  759 (761)
T ss_pred             ---CCEEE-CHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             ---98697-725546797564579998699999999999997424


No 9  
>PRK07232 malic enzyme; Reviewed
Probab=99.96  E-value=1.6e-27  Score=193.46  Aligned_cols=282  Identities=17%  Similarity=0.190  Sum_probs=220.2

Q ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC---CCEEEECCCCCCCCCCH
Q ss_conf             113898239999746877781777999999998579917999789899999986269751---55799778520177830
Q gi|254780498|r    6 VLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLK---ERSCFHHCEVSIAMDER   82 (364)
Q Consensus         6 ~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~---~ri~Ii~a~~vI~mde~   82 (364)
                      .+...+..||.+ +=|   --..++.+|..++++. -.+.+|+|+++.|+..++++++..   +.++|+++.+.-.. ++
T Consensus       434 erAK~~pKRIVF-pEG---EDeRVLrAA~~~~~EG-Ia~PILlGr~~~I~~~a~elGL~l~~~~~ieIIdP~~s~~~-~~  507 (753)
T PRK07232        434 AKAKKDPKRVVF-AEG---EEERVLRAAQEVVDEG-LAKPILIGRPSVIEARIKKLGLRLKAGVDFEIVNPEDDPRY-EE  507 (753)
T ss_pred             HHHHHCCCEEEE-CCC---CCHHHHHHHHHHHHCC-CCCEEEECCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHH-HH
T ss_conf             999748866982-588---7778999999999769-86258856999999999976999766777167688761789-99


Q ss_pred             HH---HHHHHCCCCH-----------HHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             67---9997137642-----------7999999985499539997--064267888887532255676322001105588
Q gi|254780498|r   83 PA---DALRRGRNVS-----------SMWRAIEAVKKNQAASVVT--AGNTGALIAMARLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        83 P~---~AlR~kK~~S-----------Sm~~a~~lvk~g~aDa~VS--aGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                      ..   ..+|++|+-+           ..+.|.+||+.|+|||+||  .++|+..+..++.++|+.||+.+.+-+.+|-++
T Consensus       508 Ya~~~~elrqRKGvt~~~A~~lmr~d~nyFgAmMV~~GdADgmVsG~t~sya~tLRpalqVIg~~pGv~~Vsg~~iMi~~  587 (753)
T PRK07232        508 YWQYYYELLQRRGVTPEDARRLVRRDRTVIGAMMVALGDADAMICGLTGRYHEHLRVVRQVIGLRPGVSRAAAMNLLLLK  587 (753)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf             99999999864599999999998638434899999758988781388888799999999863669998536888999927


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             9845998613277789899999999999999985689996589984---0455555657999999997402457132002
Q gi|254780498|r  147 KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKG  223 (364)
Q Consensus       147 ~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~G  223 (364)
                      ++..++.||+.|++|++|+|+++|++.+..+|. ||++ |||+|||   .|+-.+.-.+.+++|.+++++.. ++|.|-|
T Consensus       588 ~g~lF~ADt~Vn~~PtAEqLAdIAi~aA~~ar~-fGie-PRVAmLSfSnfGS~~~~~a~KVreAv~il~er~-PdlevDG  664 (753)
T PRK07232        588 GGTLFIADTYVNEDPTAEELAEIAIMAAEEVRR-FGIE-PRVALLSHSNFGSSDSPSARKMREAVELLDERA-PDLEVDG  664 (753)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEC
T ss_conf             985899726367895999999999999999998-4999-708998047789999952789999999999768-9988813


Q ss_pred             CCCHH--------------HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             34554--------------532456838997551-278899998888999999999863222088999999899999999
Q gi|254780498|r  224 FIEAN--------------DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVK  288 (364)
Q Consensus       224 niEg~--------------~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~  288 (364)
                      -.-.+              --+.|.++|+|.-.. +|||..|..+-+.                                
T Consensus       665 EMQ~DaAL~~~v~~~k~PfS~L~G~ANVLIFPnLdAaNIaYKLlq~lg--------------------------------  712 (753)
T PRK07232        665 EMHGDAALNEEIRKRLYPFSRLKGSANVLVMPNLDAANISYNLLKELG--------------------------------  712 (753)
T ss_pred             CCCHHHHCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHC--------------------------------
T ss_conf             675604439999996584896788885898899756789999999963--------------------------------


Q ss_pred             HHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             72696870874674216148983889986899999999999996
Q gi|254780498|r  289 EGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQ  332 (364)
Q Consensus       289 ~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~  332 (364)
                         +. ..=|.+|+|++++|-.-.-++++..|.|..-.+.--+|
T Consensus       713 ---ga-~aIGPIL~GL~KPVhiLsrgaSv~dIVNmaAIaavdAQ  752 (753)
T PRK07232        713 ---GG-VTIGPILLGMAKPVHILTPSATVRRIVNMTALAVVDAQ  752 (753)
T ss_pred             ---CC-EEECHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             ---98-69873555679746457999859999999999998601


No 10 
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=99.96  E-value=1.2e-26  Score=187.92  Aligned_cols=287  Identities=18%  Similarity=0.214  Sum_probs=219.6

Q ss_pred             CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf             74311138982399997468777817779999999985799179997898999999862697515579977852017783
Q gi|254780498|r    2 NQMDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDE   81 (364)
Q Consensus         2 ~~~~~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde   81 (364)
                      +++.-+..++..||++= =| +  -..+++++..+.++. -.+.+|+|+++.|+..+++.++..+.++|+|+.+.-..++
T Consensus         5 ~~i~~~ar~~~krIv~a-eg-e--d~rvL~Aa~~~~~~g-i~~pILvG~~~~I~~~~~~~gl~l~~~eIidp~~~~~~~~   79 (324)
T PRK09653          5 ERLKEKALGKKKKIVLP-EG-E--DERVLEAAKRLQKEG-LVEPILLGNPEEIREKALELGVDLDGIEIIDPHTYPKLEE   79 (324)
T ss_pred             HHHHHHHHHCCCEEEEE-CC-C--CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH
T ss_conf             99999996189989993-87-9--989999999999869-9589997799999999997699965758978998589999


Q ss_pred             HHHH---HHHHCCC---------CHHHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             0679---9971376---------42799999998549953999706---4267888887532255676322001105588
Q gi|254780498|r   82 RPAD---ALRRGRN---------VSSMWRAIEAVKKNQAASVVTAG---NTGALIAMARLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        82 ~P~~---AlR~kK~---------~SSm~~a~~lvk~g~aDa~VSaG---nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                       ...   .+|+.|.         ....+.|.+||+.|+||++++ |   +|.-++.+++.++|+.+|+.+.+-..+|...
T Consensus        80 -~~~~~~~~r~~k~~~~~A~~~~~~~~~~aa~mv~~G~aD~lv~-G~~~~t~~~lr~~l~iig~~~g~~~vS~~~~m~~~  157 (324)
T PRK09653         80 -FAEAFVERRKGKATEEDARKILKDPNYFGTMLVKMGKADGMVS-GAIHSTADTLRPALQIIKTKPGVKTVSSIFIMVKG  157 (324)
T ss_pred             -HHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCEEEC-CCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf             -9999999856889899999987474289999986799875852-61020199999999884258998603689999617


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             9845998613277789899999999999999985689996589984---0455555657999999997402457132002
Q gi|254780498|r  147 KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKG  223 (364)
Q Consensus       147 ~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~G  223 (364)
                      ++..++.|++.|++|++|+|+++|......+|. +|++ |||++|+   .|+-.+.-...+++|.+++++.. +++.+-|
T Consensus       158 ~~~l~~tD~avn~~P~~eqla~Ia~~a~~~~~~-lG~e-PrVA~LS~S~~gs~~~~s~~~~~~A~~~~~~~~-p~~~vdG  234 (324)
T PRK09653        158 DERYIFADCAVNPNPTAQQLAEIAINSAETAKA-FGIE-PKVAMLSFSTKGSAKGPEVDKVQEATEIAKELA-PDLEIDG  234 (324)
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-CCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEECC
T ss_conf             855999537656798999999999999999998-5999-838861001047988700589999999999668-9974247


Q ss_pred             CCCHH--------------HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             34554--------------532456838997551-278899998888999999999863222088999999899999999
Q gi|254780498|r  224 FIEAN--------------DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVK  288 (364)
Q Consensus       224 niEg~--------------~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~  288 (364)
                      ..-.+              .-+.|.+||+|.=.. +|||+-|...-++                                
T Consensus       235 elq~D~Al~~~~a~~k~p~s~vaG~AnvLI~Pnl~agNi~yK~l~~l~--------------------------------  282 (324)
T PRK09653        235 ELQFDAAFVPEVAAQKAPGSPVAGKANVFVFPSLEAGNIGYKIAQRLG--------------------------------  282 (324)
T ss_pred             CCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--------------------------------
T ss_conf             410666539999985189997689887899488178899999999957--------------------------------


Q ss_pred             HHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             7269687087467421614898388998689999999999999607
Q gi|254780498|r  289 EGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       289 ~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                         +++.+ |.+|+|++.||+...-+++...+.|.+-.+.--.|++
T Consensus       283 ---~a~~~-Gpil~G~~~Pv~~~sr~~sv~di~n~~aiaa~~aq~~  324 (324)
T PRK09653        283 ---GFEAV-GPILQGLNKPVNDLSRGCSVEDIYNLALITAAQAQNE  324 (324)
T ss_pred             ---CCEEE-CHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             ---98387-4455377888787899888999999999999996159


No 11 
>pfam01515 PTA_PTB Phosphate acetyl/butaryl transferase. This family contains both phosphate acetyltransferase and phosphate butaryltransferase. These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.
Probab=99.96  E-value=1.3e-26  Score=187.77  Aligned_cols=282  Identities=17%  Similarity=0.177  Sum_probs=219.0

Q ss_pred             CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
Q ss_conf             74311138982399997468777817779999999985799179997898999999862697515579977852017783
Q gi|254780498|r    2 NQMDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDE   81 (364)
Q Consensus         2 ~~~~~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde   81 (364)
                      ..+..+..++..||++ +=|-   -..+++++..+.++. -.+.+|+|++++|+..+++.++..+.++|+++.+.-..++
T Consensus         4 ~~i~~~ak~~~krIvf-~ege---d~rvl~Aa~~~~~eg-i~~PILvG~~~~I~~~~~~~gl~~~~~eIid~~~~~~~~~   78 (319)
T pfam01515         4 ERIFERAKSAKKRIVF-PEGE---DERVLKAAKELLEEG-IADPILIGNEIEIKAKALGLGLDLSGIEIVDPETSPRDEE   78 (319)
T ss_pred             HHHHHHHHHCCCEEEE-ECCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH
T ss_conf             9999999848998999-5879---979999999999869-9279998899999999997698966778988888767999


Q ss_pred             --HHHHHHHHCCCC----------HHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             --067999713764----------27999999985499539997064---267888887532255676322001105588
Q gi|254780498|r   82 --RPADALRRGRNV----------SSMWRAIEAVKKNQAASVVTAGN---TGALIAMARLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        82 --~P~~AlR~kK~~----------SSm~~a~~lvk~g~aDa~VSaGn---TGA~la~a~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                        .-...+|++|+.          ...+.|.+||+.|+||++++ |.   |..++.+++.++|..||+.+.+-+.+|-.+
T Consensus        79 y~~~~~~~~~rkG~~~~~a~~~~~~~~~~aa~mv~~G~aD~lv~-G~~~tt~~~lr~~l~~ig~~~~~~~~s~~~~m~~~  157 (319)
T pfam01515        79 YADEFYELRKHKGMTPEIAREIVRDPTYFAAMLVKLGEADGLVS-GAVNTTADTLRPALQIIKTLPGVKIVSSVFIMLLP  157 (319)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf             99999999723899999999999766999999997789887820-89888299999999986578998459999987717


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf             9845998613277789899999999999999985689996589984---0455555657999999997402457132002
Q gi|254780498|r  147 KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKG  223 (364)
Q Consensus       147 ~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~G  223 (364)
                      ++..++.||+.|++|++++|+++|+..+..+|. +|...|||++|+   .|+..+.-+..++++.+++++.. +++++-|
T Consensus       158 ~~~lf~aD~~Vn~~P~~eqla~Ia~~aa~~~~~-lg~~~PkVA~LS~S~~gs~~~~~~~~~~~a~~~~~~~~-pd~~vdG  235 (319)
T pfam01515       158 DRLLFFTDCAVNPNPTAEELAEIALNAAKTAKA-LGNIEPRVAMLSYSTFGSGKGESVEKVREATKIAKEKA-PDLVVDG  235 (319)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEECC
T ss_conf             953999706366698999999999999999998-45899704554202567999952899999999997369-9963368


Q ss_pred             CCCH--------------HHCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3455--------------4532456838997551-278899998888999999999863222088999999899999999
Q gi|254780498|r  224 FIEA--------------NDIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVK  288 (364)
Q Consensus       224 niEg--------------~~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~  288 (364)
                      -.-.              .--+.|.+||+|.=.. +|||..|..+-++                                
T Consensus       236 emq~D~Al~~~~~~~k~p~s~l~G~AnvLIfPnl~agNI~yK~~~~l~--------------------------------  283 (319)
T pfam01515       236 ELQLDAAIVEEVAAQKAPDSPVAGKANVLVFPDLEAGNIGYKIAQRLA--------------------------------  283 (319)
T ss_pred             CCHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--------------------------------
T ss_conf             630777649999997489998789888899289488899999999845--------------------------------


Q ss_pred             HHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             726968708746742161489838899868999999999
Q gi|254780498|r  289 EGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIA  327 (364)
Q Consensus       289 ~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a  327 (364)
                         ++. .-|.+|+|++.||+...-++++..+.|.+-.|
T Consensus       284 ---~~~-~iGpil~G~~~Pv~~~sr~~s~~di~n~~ala  318 (319)
T pfam01515       284 ---GAE-AIGPILQGLAKPVNDLSRGASVEDIVNTIAIT  318 (319)
T ss_pred             ---CCE-EECHHHHCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf             ---986-97235546799779789988889999999985


No 12 
>PRK12861 malic enzyme; Reviewed
Probab=99.96  E-value=1.7e-26  Score=187.05  Aligned_cols=283  Identities=14%  Similarity=0.179  Sum_probs=220.2

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCC---CCEEEECCCCCCCCCCHHH-
Q ss_conf             898239999746877781777999999998579917999789899999986269751---5579977852017783067-
Q gi|254780498|r    9 GGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLK---ERSCFHHCEVSIAMDERPA-   84 (364)
Q Consensus         9 ~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~---~ri~Ii~a~~vI~mde~P~-   84 (364)
                      +++..||.+ +=|   --+.++.+|..++++. -.+.+|+|++++|+..++++++..   +.++|+++...-..+ +.. 
T Consensus       443 ~~~pKRIVF-aEG---EdeRVLRAAq~~~dEG-ia~PILIGr~e~I~~~i~~lGL~L~~~~dieIiDP~~s~r~~-~Ya~  516 (762)
T PRK12861        443 DGGKARIVF-TEG---EDERVLRAVQVIVDEK-LARPILVGRPEVLLARIERFGLRLRLGQDVEVTNPEYDERFP-QYWT  516 (762)
T ss_pred             CCCCCEEEE-CCC---CCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH-HHHH
T ss_conf             568746992-488---7768999999999749-842899729999999999819996656665301788650489-9999


Q ss_pred             --HHHHHCCCCH-----------HHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf             --9997137642-----------7999999985499539997--064267888887532255676322001105588984
Q gi|254780498|r   85 --DALRRGRNVS-----------SMWRAIEAVKKNQAASVVT--AGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGK  149 (364)
Q Consensus        85 --~AlR~kK~~S-----------Sm~~a~~lvk~g~aDa~VS--aGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~  149 (364)
                        ..+|++|+-+           .-+.|.+||+.|+|||+||  .++|+..+..++.++|+-||+.+.+-+.+|-++++.
T Consensus       517 ~y~elrqRKGvt~~~Ar~~vr~~~n~FgAmMV~~GdADgMV~G~t~~ya~~LrpalqVIG~~pg~~~vs~~~lmi~~~~~  596 (762)
T PRK12861        517 TYWELRCRDGISKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVGEYHNHLRFVDEVIGRKPGASTYAAMNILLLDQRT  596 (762)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCC
T ss_conf             99999752799899999997358510678798738877784378877099999999961889998447888899838962


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf             5998613277789899999999999999985689996589984---0455555657999999997402457132002345
Q gi|254780498|r  150 CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE  226 (364)
Q Consensus       150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE  226 (364)
                      .++.|+..|++|++|+|+++|++.+..+|. ||++ |||+|||   .|+-.+.-.+.+++|.++|++.. ++|.|-|-.-
T Consensus       597 lF~ADT~Vn~~PtAEqLAeIAi~aA~~ar~-fGie-PRVAmLSfSnFGS~~~~~~~KVreAveil~er~-PdlevDGEMQ  673 (762)
T PRK12861        597 VALVDTHVNDNPDAEQIAEFTIAAARQMEW-LNLT-PKVALLSRSNFGSGSAASGVKMRRALEIVREQA-PDIEADGEMH  673 (762)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHH-CCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEECCCC
T ss_conf             899726254587999999999999999998-3999-738998057899999971579999999999748-9968833787


Q ss_pred             HHH--------------CCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             545--------------32456838997551-278899998888999999999863222088999999899999999726
Q gi|254780498|r  227 AND--------------IAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGF  291 (364)
Q Consensus       227 g~~--------------i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~  291 (364)
                      ++-              -+.|.++|+|.=.. +|||..|..+-           .                        .
T Consensus       674 ~DaAL~~~v~~~~~PfS~L~G~ANVLIfPnLdAANIaYKLlq~-----------~------------------------~  718 (762)
T PRK12861        674 GDCALDEGLRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKT-----------E------------------------A  718 (762)
T ss_pred             CCHHCCHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHH-----------H------------------------C
T ss_conf             1410589999855818967787848988996178999999999-----------6------------------------3


Q ss_pred             CHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf             96870874674216148983889986899999999999996070
Q gi|254780498|r  292 DPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGF  335 (364)
Q Consensus       292 d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~~~  335 (364)
                      .....-|.+|+|++++|-+..-++++.-|.|..-.|.--++.|+
T Consensus       719 G~~vaIGPIL~Gl~KPVhiLsrgaSV~dIVNmaAIAavdAq~nv  762 (762)
T PRK12861        719 GSNVAVGPFLLGVNAPVNILTSSATVRRIVNMAALTVIEANRNV  762 (762)
T ss_pred             CCCCEECHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             99855561755689860348999878999999999999864059


No 13 
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=99.94  E-value=3e-24  Score=172.79  Aligned_cols=282  Identities=17%  Similarity=0.170  Sum_probs=213.7

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCC---CCHHHH
Q ss_conf             89823999974687778177799999999857991799978989999998626975155799778520177---830679
Q gi|254780498|r    9 GGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAM---DERPAD   85 (364)
Q Consensus         9 ~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~m---de~P~~   85 (364)
                      .+...||.++-  |+  -+.++.++...+++ .-...+|+|+++.|+..++...+..+.++|+++...-..   ..+...
T Consensus        10 ~~~~kriv~~E--ge--d~rvl~Aa~~~~~~-g~~~~ilvg~~~~i~~~~~~~gl~l~~~eiidp~~~~~~~~~y~~~~~   84 (327)
T COG0280          10 RKAPKRIVLPE--GE--EERVLRAAQVLAKE-GLAKPILVGRPEEIEEVAKALGLDLDGIEIINPELDPERFEEYVDRLY   84 (327)
T ss_pred             HHCCCEEEECC--CC--CHHHHHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf             51687698168--74--37999999999865-977528974899999999983546564478672227066899999999


Q ss_pred             HHHHCCC-----------CHHHHHHHHHHHCCCCEEEEE--ECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEE
Q ss_conf             9971376-----------427999999985499539997--064267888887532255676322001105588984599
Q gi|254780498|r   86 ALRRGRN-----------VSSMWRAIEAVKKNQAASVVT--AGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCII  152 (364)
Q Consensus        86 AlR~kK~-----------~SSm~~a~~lvk~g~aDa~VS--aGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vl  152 (364)
                      .+|+.|+           +..-+.|.+||+.|+||++||  .++|.-++..++.++|+-||+...+-..+|-..++.+++
T Consensus        85 e~~k~kG~t~~~a~~~~~~d~~~~a~~mv~~g~aD~~v~G~~~tt~~~lr~~lqii~~~pG~~~~s~v~im~~~~~~l~~  164 (327)
T COG0280          85 ELRKRKGVTPEDAQELVREDPTVFAAMMVALGEADGLVSGAVHTTADTLRPALQIIGTRPGVSLVSSVFIMLLPDGTLFF  164 (327)
T ss_pred             HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEE
T ss_conf             99643799999999885448089999999759887897557667798998899870888987667878999937960899


Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHH-
Q ss_conf             8613277789899999999999999985689996589984---045555565799999999740245713200234554-
Q gi|254780498|r  153 LDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAN-  228 (364)
Q Consensus       153 lD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~-  228 (364)
                      -||..|++|++|+|+++|++.+..+|. +|++ |||+|||   .|+..+..++-++||.+++++....++.+-|-.-.+ 
T Consensus       165 ~D~avn~~PtaeeladIa~~sa~~a~~-fgi~-PkVAlLS~St~gs~~~~~~~kv~ea~~i~~~~~~~dl~vDGelq~Da  242 (327)
T COG0280         165 ADCAVNPDPTAEELADIAENAAETARR-FGIE-PKVALLSYSTFGSGKGPSTDKVREATKILRERAPPDLEVDGELQFDA  242 (327)
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHH-HCCC-CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHH
T ss_conf             713357897999999999999999998-0898-70689975427888881079999999999716975666606752435


Q ss_pred             -------------HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             -------------532456838997551-278899998888999999999863222088999999899999999726968
Q gi|254780498|r  229 -------------DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPR  294 (364)
Q Consensus       229 -------------~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~  294 (364)
                                   --+.|.+||+|-... +|||..|...-++                                   ++ 
T Consensus       243 A~~~~va~~k~p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~-----------------------------------~a-  286 (327)
T COG0280         243 ALVEKVAAKKAPDSPLAGSANVLVFPDLEAGNIGYKLLQRLG-----------------------------------GA-  286 (327)
T ss_pred             HCCHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHC-----------------------------------CC-
T ss_conf             539999995389997678777897488217778999999953-----------------------------------78-


Q ss_pred             HCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             708746742161489838899868999999999999960
Q gi|254780498|r  295 NFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN  333 (364)
Q Consensus       295 ~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~  333 (364)
                      ..-|.+|+|++++|..---+.+..-+.|.+-.+.-..+.
T Consensus       287 ~avGPil~G~~kPV~~lSrg~sv~dIvn~~alaa~qa~~  325 (327)
T COG0280         287 LAVGPILQGLAKPVNDLSRGASVEDIVNMAALAAVQAQT  325 (327)
T ss_pred             CEECHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             556002425766532358889889999999999998623


No 14 
>TIGR00651 pta phosphate acetyltransferase; InterPro: IPR004614 Phosphate acetyltransferase (2.3.1.8 from EC) catalyses the conversion of acetyl-CoA and phosphate to CoA and acetyl phosphate in the last two steps in the conversion of actetae to acetyl-CoA.; GO: 0016407 acetyltransferase activity.
Probab=99.92  E-value=8.3e-24  Score=170.02  Aligned_cols=255  Identities=19%  Similarity=0.248  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHHHCCCCE-EEEECCHHHHHH--HHHHCCCCCCCEEEECCCCCCCCCCHHHH---HHHHCCCCH------
Q ss_conf             777999999998579917-999789899999--98626975155799778520177830679---997137642------
Q gi|254780498|r   27 RDLILGASKFLEAHPRIR-FLMYGDAKVCLP--ILDSHPLLKERSCFHHCEVSIAMDERPAD---ALRRGRNVS------   94 (364)
Q Consensus        27 ~~vi~Ga~~al~~~~~i~-iiLvGdee~I~~--~l~~~~~~~~ri~Ii~a~~vI~mde~P~~---AlR~kK~~S------   94 (364)
                      .-++++|..-.+++ -+. ++|++.++.+..  ..........++.|+++...-.+ |..+.   .+||.|+.+      
T Consensus         9 ~R~LkAa~~l~~~~-i~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-E~Y~~~~~e~RK~KG~t~~~A~~   86 (322)
T TIGR00651         9 PRVLKAAALLAERG-IATPVVLGNKEEIVKNAKEAANCNLDLGKVVIIDPDVSPDR-ESYAERYYELRKHKGVTLAQARK   86 (322)
T ss_pred             HHHHHHHHHHHHCC-CCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH-HHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             65899999998578-74312332724677889998732511374588278674227-99999999874155604799999


Q ss_pred             ----HHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC------------CCEEEEEC
Q ss_conf             ----799999998549953999706---42678888875322556763220011055889------------84599861
Q gi|254780498|r   95 ----SMWRAIEAVKKNQAASVVTAG---NTGALIAMARLCLSRISGVDRPSLAAFWPTVK------------GKCIILDV  155 (364)
Q Consensus        95 ----Sm~~a~~lvk~g~aDa~VSaG---nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~------------g~~vllD~  155 (364)
                          ..+.|++||..|+|||+|| |   .|.-++.+++.+|+|.||++--.=.-+|-+.+            +.+++-||
T Consensus        87 ~l~D~~~fa~~mv~~g~aDg~Vs-Ga~~tTa~tlRpaLqiI~T~~Gvk~vSSvFiM~~~~~~~nvdfC~G~~~~l~F~DC  165 (322)
T TIGR00651        87 QLRDESYFATMMVALGEADGLVS-GAVHTTADTLRPALQIIKTLPGVKIVSSVFIMDTNETALNVDFCFGTREVLVFADC  165 (322)
T ss_pred             HHHCHHHHHHHHHHCCCCCEEEE-CCHHHHHHHCCHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCEEEEEEE
T ss_conf             73045789999987087432550-40230265404256652037885068777886588862101002574412688512


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCC--CCCCCHHHHHHHHHHHHCCCCCC--CEECCCC--
Q ss_conf             32777898999999999999999856899965899840---455--55565799999999740245713--2002345--
Q gi|254780498|r  156 GATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTE--EIKGNDVLQESARLLRGECCGAF--KYKGFIE--  226 (364)
Q Consensus       156 GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E--~~KG~~~~kea~~LL~~~~~~~~--nF~GniE--  226 (364)
                      ..||+|++++|+++|+-.+..||.+.++| |||+|||.   ||=  .++-.+-|++|-++++|.. ++|  .+-|-.-  
T Consensus       166 Av~~~P~a~~LAeIA~~sA~sak~f~~~e-pkVAlLSYST~gSgGd~g~~veKV~~A~~I~~Ek~-pdL~~~~dGELQ~D  243 (322)
T TIGR00651       166 AVNVDPNAEQLAEIAIQSAKSAKSFGEIE-PKVALLSYSTKGSGGDSGEEVEKVREATRIAKEKR-PDLKATIDGELQFD  243 (322)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-HHHHHHCCCCHHHH
T ss_conf             45029887899999999999999846899-60899830245565554133389999999985387-13764058730111


Q ss_pred             ------------HHHCCCCCCCEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------------54532456838997551----27889999888899999999986322208899999989999999972
Q gi|254780498|r  227 ------------ANDIAKGFVDVIVTEGF----SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEG  290 (364)
Q Consensus       227 ------------g~~i~~g~~DVvV~DGF----tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~  290 (364)
                                  |+=.+.|+++|.|   |    +|||--|..+=                                   .
T Consensus       244 AA~v~~Va~~KaP~S~v~G~Anvfv---FPdL~aGNigYK~vQR-----------------------------------~  285 (322)
T TIGR00651       244 AAVVEKVAEKKAPNSPVAGKANVFV---FPDLDAGNIGYKIVQR-----------------------------------L  285 (322)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEE---CCCCCCCHHHHHHHHH-----------------------------------H
T ss_conf             4323888964078986556355887---1687740578888876-----------------------------------2


Q ss_pred             CCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHH
Q ss_conf             69687087467421614898388998689999999
Q gi|254780498|r  291 FDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLG  325 (364)
Q Consensus       291 ~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~  325 (364)
                      -|++.| |.+|+|+++||===-....+.-|.|++-
T Consensus       286 ~~~~Ai-GPiLQGl~kPvnDLSRGcsV~DI~~~~~  319 (322)
T TIGR00651       286 ADAEAI-GPILQGLSKPVNDLSRGCSVEDIVNAIA  319 (322)
T ss_pred             CCCEEE-CCHHHHHCCCCCHHCCCCCHHHHHHHHH
T ss_conf             377234-4067521476541103577999999898


No 15 
>PRK11890 phosphate acetyltransferase; Provisional
Probab=99.92  E-value=2.3e-22  Score=160.97  Aligned_cols=268  Identities=14%  Similarity=0.102  Sum_probs=189.8

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHH
Q ss_conf             38982399997468777817779999999985799179997898999999862697515579977852017783067999
Q gi|254780498|r    8 QGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADAL   87 (364)
Q Consensus         8 ~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~Al   87 (364)
                      +..+..||+|= -+.|   +.+++++..+.++. -.+.+|+|++++|+...++.+++.+.++|+|++..           
T Consensus        18 ~~~~pkrvava-~aed---~~vL~Aa~~a~~eG-ia~PILvG~~~~I~~~a~~~gldl~~~eIid~~~~-----------   81 (312)
T PRK11890         18 RTLPPLPTAVV-HPCD---ESSLRGAVEAAQLG-LITPILVGPRARIRAVAEECGLDLSDYQIVDAPHS-----------   81 (312)
T ss_pred             HHCCCCEEEEE-CCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCC-----------
T ss_conf             54899629998-4799---79999999999869-83799989999999999985999788868789982-----------


Q ss_pred             HHCCCCHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHHHHCCCCCCCCCCCHHH--CCCCCCCCEEEEECCCCCCCCHH
Q ss_conf             713764279999999854995399970-642678888875322556763220011--05588984599861327778989
Q gi|254780498|r   88 RRGRNVSSMWRAIEAVKKNQAASVVTA-GNTGALIAMARLCLSRISGVDRPSLAA--FWPTVKGKCIILDVGATIGSTVS  164 (364)
Q Consensus        88 R~kK~~SSm~~a~~lvk~g~aDa~VSa-GnTGA~la~a~~~lg~i~Gv~RPala~--~~Pt~~g~~vllD~GAN~d~~~~  164 (364)
                           +.+-..+.+++++|++|++++. .+|..+|.........++...|-.-+.  .+|+.+...++.|++.|++|+++
T Consensus        82 -----~~~a~~av~lv~~g~Ad~lmkG~~~t~~~l~~vl~~~~glr~~~~vS~v~~m~~~~~~k~l~~tD~~vni~P~~e  156 (312)
T PRK11890         82 -----HAAAAKAVELVRAGEAEALMKGSLHTDELMSAVVARDTGLRTERRISHVFVMDVPTYPKPLIITDAAVNIAPTLE  156 (312)
T ss_pred             -----HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEECCEEEECCCHH
T ss_conf             -----899999999833788868986787625676665410367678864789999973688834999426577587999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH---CCCCCCCEECCCCH--------------
Q ss_conf             9999999999999985689996589984045555565799999999740---24571320023455--------------
Q gi|254780498|r  165 HMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRG---ECCGAFKYKGFIEA--------------  227 (364)
Q Consensus       165 ~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~---~~~~~~nF~GniEg--------------  227 (364)
                      +|++++.+....++. ||++.|||+||+--+.-+.....+.++-.+.+.   ....++.+-|..-.              
T Consensus       157 qla~Ia~~aa~~a~~-~Gi~~PkVA~LS~se~~s~~~pst~da~~l~k~~~r~~~~~~~vDGelq~D~Al~~~~a~~K~~  235 (312)
T PRK11890        157 DKADIVQNAIDLAHA-LGEDEPRVAILSAVETVNPKIPSTLDAAALCKMADRGQITGAILDGPLAFDNAISPEAARIKGI  235 (312)
T ss_pred             HHHHHHHHHHHHHHH-HCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHCHHHHHHHCC
T ss_conf             999999999999998-3899862899960036788761079999999987651488874257318888738999997344


Q ss_pred             HHCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECC
Q ss_conf             4532456838997551-278899998888999999999863222088999999899999999726968708746742161
Q gi|254780498|r  228 NDIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDG  306 (364)
Q Consensus       228 ~~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g  306 (364)
                      ..-..|.+||+|+=-. +|||..|...-                    ++               .+ ...| +++|++.
T Consensus       236 ~s~vaG~AnvLIfPnLeagNI~yK~l~~--------------------l~---------------ga-~a~G-il~G~~~  278 (312)
T PRK11890        236 VSPVAGDADILLVPDLEAGNMLAKQLTF--------------------LA---------------GA-DAAG-IVLGARV  278 (312)
T ss_pred             CCCCCCCCCEEEECCHHHHHHHHHHHHH--------------------HC---------------CC-EEEE-EEECCCC
T ss_conf             7866887988991882787899999998--------------------45---------------98-3997-6650688


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             4898388998689999999999999607
Q gi|254780498|r  307 LVVKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       307 ~vik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                      ||+....+++...+.|.+-.|.-.+|..
T Consensus       279 PV~~~SR~~s~~~~vn~~Ala~v~Aq~~  306 (312)
T PRK11890        279 PIILTSRADSVRTRLASCAVAALVANAR  306 (312)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             8787899888999999999999999874


No 16 
>PRK05805 phosphate butyryltransferase; Validated
Probab=99.91  E-value=1.4e-21  Score=155.96  Aligned_cols=262  Identities=15%  Similarity=0.154  Sum_probs=182.7

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             98239999746877781777999999998579917999789899999986269751557997785201778306799971
Q gi|254780498|r   10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRR   89 (364)
Q Consensus        10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~   89 (364)
                      .+..||++ +=|.|   ..++++|..+.++. -.+.+|+|+++.|+..+++.+++.+.++|+|+.+.            +
T Consensus        15 ~~pkrIv~-~eg~d---~rvl~AA~~~~~~g-ia~pILiG~~~~I~~~~~~~gl~l~~~eiid~~~~------------~   77 (301)
T PRK05805         15 QGPKTISV-AVAQD---EPVLEAVKEAKELG-IANAILVGDEEKIKEIAKEIGMDLEDFEIIDEKDN------------K   77 (301)
T ss_pred             CCCCEEEE-ECCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCH------------H
T ss_conf             79896999-08999---79999999999879-97999985999999999987999666777356462------------9


Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHH-HHCCCCCCCCCCC-H-HHCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf             37642799999998549953999706--4267888887-5322556763220-0-1105588984599861327778989
Q gi|254780498|r   90 GRNVSSMWRAIEAVKKNQAASVVTAG--NTGALIAMAR-LCLSRISGVDRPS-L-AAFWPTVKGKCIILDVGATIGSTVS  164 (364)
Q Consensus        90 kK~~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~-~~lg~i~Gv~RPa-l-a~~~Pt~~g~~vllD~GAN~d~~~~  164 (364)
                          -.-..|.+||+.|++|++++ |  +|..++...+ ...|.-+| .+-. + ...+|+.++..++-||+.|++|+++
T Consensus        78 ----~~~~~a~~lv~~G~aD~lv~-G~~~t~~~lr~~l~~~~g~~~g-~~~s~~~~~~~~~~~~~l~~aD~~vn~~P~~e  151 (301)
T PRK05805         78 ----KAALKAVELVSSGKADMVMK-GLVDTATFLRAVLNKEIGLRTG-KTMSHVAVFEVPKYDRLLFLTDAAFNIYPDLK  151 (301)
T ss_pred             ----HHHHHHHHHHHCCCHHHHHC-CCCCCHHHHHHHHHHHCCCCCC-CCEEEEEEEEECCCCCEEEEECCCCCCCCCHH
T ss_conf             ----99999999986787467863-8755438999985101477788-71789999996289816999456200093999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHH-------------
Q ss_conf             99999999999999856899965899840---45555565799999999740245713200234554-------------
Q gi|254780498|r  165 HMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAN-------------  228 (364)
Q Consensus       165 ~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~-------------  228 (364)
                      +|+++|++.+..++. ||++.|||+||+-   |+....-+.-..+.-+.++....+++.+-|..-.+             
T Consensus       152 ~la~Ia~~aa~~a~~-lgie~PrVAlLS~s~~~s~~~~s~~da~~~~~~~~~~~~~~~~vDGelq~D~Al~~e~~~~k~~  230 (301)
T PRK05805        152 EKIDIINNAVTVAHA-IGIEVPKVAPICAVEVVNPKMPATLDAALLSKMSDRGQIKGCIVDGPFALDNAISEEAAKHKGI  230 (301)
T ss_pred             HHHHHHHHHHHHHHH-HCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHCHHHHHHHCC
T ss_conf             999999999999998-2899985999930047788873079999999998741388874567624777738999985189


Q ss_pred             -HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECC
Q ss_conf             -532456838997551-278899998888999999999863222088999999899999999726968708746742161
Q gi|254780498|r  229 -DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDG  306 (364)
Q Consensus       229 -~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g  306 (364)
                       --+.|.+||+|.=.. +|||..|..+-++                                   +. ..+| +|.|++.
T Consensus       231 ~s~vaG~ANvLIfPnL~agNI~yKl~q~~~-----------------------------------ga-~~~G-il~G~~~  273 (301)
T PRK05805        231 DGPVAGKADILLVPNIEAGNVMYKTLTYFA-----------------------------------DC-KNGG-LLVGTSA  273 (301)
T ss_pred             CCCCCCCCCEEECCCHHHHHHHHHHHHHHC-----------------------------------CC-EEEE-EEECCCC
T ss_conf             997688788898688578899999999966-----------------------------------98-2885-6532798


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             48983889986899999999999996
Q gi|254780498|r  307 LVVKGHGSSDAKSIFNVLGIAHNMSQ  332 (364)
Q Consensus       307 ~vik~HG~s~~~a~~~ai~~a~~~~~  332 (364)
                      ||...-.++++..+.|.+-.|.-.++
T Consensus       274 Pv~~lSR~~s~~di~n~~aiaal~A~  299 (301)
T PRK05805        274 PVVLTSRADSHETKLNSIALAALVAA  299 (301)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             88769998889999999999999973


No 17 
>PRK07742 phosphate butyryltransferase; Validated
Probab=99.90  E-value=2.2e-21  Score=154.72  Aligned_cols=260  Identities=20%  Similarity=0.263  Sum_probs=180.0

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCC-EEEECCCCCCCCCCHHHHHHH
Q ss_conf             9823999974687778177799999999857991799978989999998626975155-799778520177830679997
Q gi|254780498|r   10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKER-SCFHHCEVSIAMDERPADALR   88 (364)
Q Consensus        10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~r-i~Ii~a~~vI~mde~P~~AlR   88 (364)
                      ....+|++ +=|-|   ..+++++..++++. -.+.+|+|++++|+..+++..++... ++|+|++..       .    
T Consensus        13 ~~~k~I~~-aeged---~rvL~Aa~~~~~eg-ia~PILvG~~~~I~~~~~~~~l~~~~~~~i~~~~~~-------~----   76 (299)
T PRK07742         13 QPKKTVAV-AVAED---EEVIEAVAKAIELQ-LARFRLYGNQEKIMGMLQEHSLQTSEHIEIIHAQSS-------A----   76 (299)
T ss_pred             CCCCEEEE-CCCCC---HHHHHHHHHHHHCC-CEEEEEEECHHHHHHHHHHCCCCCCCCEEECCCCCH-------H----
T ss_conf             89986998-28999---79999999999869-968999819999999999869997788277189997-------9----


Q ss_pred             HCCCCHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHCCCCCCCCCCCH-----HHCCCCCCCCEEEEECCCCCCC
Q ss_conf             1376427999999985499539997064--26788888753225567632200-----1105588984599861327778
Q gi|254780498|r   89 RGRNVSSMWRAIEAVKKNQAASVVTAGN--TGALIAMARLCLSRISGVDRPSL-----AAFWPTVKGKCIILDVGATIGS  161 (364)
Q Consensus        89 ~kK~~SSm~~a~~lvk~g~aDa~VSaGn--TGA~la~a~~~lg~i~Gv~RPal-----a~~~Pt~~g~~vllD~GAN~d~  161 (364)
                           .....|.++|+.|+||++++ |+  |..+|..   ++++..|+.....     +..+|..++..++.||+.|++|
T Consensus        77 -----~~~~~a~~~v~~g~aD~lv~-G~~~t~~~l~~---~l~~~~gl~~~~~~s~v~~~~~p~~~~~l~~~D~aVni~P  147 (299)
T PRK07742         77 -----EAAELAVKAVRNGEADVLMK-GNVPTANILKA---VLNKEWGLRKGSVLSHVAAFEVPNYDRLIFVTDAAMNIAP  147 (299)
T ss_pred             -----HHHHHHHHHHHCCCCCEEEC-CCCCCCCCHHH---HHCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCEEECCC
T ss_conf             -----99999999975797859924-77675211063---4351358778885899999984178835998305575288


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH---HHHCCCCCCCEECCCCH-----------
Q ss_conf             9899999999999999985689996589984045555565799999999---74024571320023455-----------
Q gi|254780498|r  162 TVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARL---LRGECCGAFKYKGFIEA-----------  227 (364)
Q Consensus       162 ~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~L---L~~~~~~~~nF~GniEg-----------  227 (364)
                      ++++|+++|+..+..+|. ||++.|||++|+--+--+.......++..+   .+....+++.+-|..-.           
T Consensus       148 ~~eqla~Ia~~aa~~a~~-~gie~PkVAmLS~~~~~~~~~~~~~~a~~~~~~~~r~~~~d~~vDGelq~D~Al~~~~~~~  226 (299)
T PRK07742        148 DLTQKAAIIQNAVEVARA-IGIDLPKVAPLAAVEVVNPAMQATIDAAALTQMNRRGQIKNCVVDGPLALDNAVSQIAAEH  226 (299)
T ss_pred             CHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999999999998-4799870203532135798873179999999998774366761467427777636999975


Q ss_pred             ---HHCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEE
Q ss_conf             ---4532456838997551-278899998888999999999863222088999999899999999726968708746742
Q gi|254780498|r  228 ---NDIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLG  303 (364)
Q Consensus       228 ---~~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llG  303 (364)
                         ..-+.|.+||+|.=-. +|||.-|..+-                                +-   +. .. |.+|+|
T Consensus       227 k~~~s~v~G~ANvLIfPnL~agNI~yK~l~~--------------------------------~~---ga-~i-GpiL~G  269 (299)
T PRK07742        227 KGIVSDVAGKADILLVPTIEAGNVLYKSLVY--------------------------------FA---DA-KV-GAMIAG  269 (299)
T ss_pred             HCCCCCCCCCCCEEEECCHHHHHHHHHHHHH--------------------------------HC---CC-CE-ECEEEC
T ss_conf             2899977887878990782787899999998--------------------------------46---99-54-045752


Q ss_pred             ECCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             16148983889986899999999999996
Q gi|254780498|r  304 VDGLVVKGHGSSDAKSIFNVLGIAHNMSQ  332 (364)
Q Consensus       304 l~g~vik~HG~s~~~a~~~ai~~a~~~~~  332 (364)
                      ++.||+....++++..+.|++-.|.-..+
T Consensus       270 ~~~Pv~~lSR~~s~~~ivn~~Alav~~Aq  298 (299)
T PRK07742        270 AKAPIVLTSRADSAETKLYSLALAICTAS  298 (299)
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             78886868999888999999999999856


No 18 
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.52  E-value=6.6e-11  Score=88.68  Aligned_cols=247  Identities=18%  Similarity=0.182  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf             77799999999857991799978989999998626975155799778520177830679997137642799999998549
Q gi|254780498|r   27 RDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKN  106 (364)
Q Consensus        27 ~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g  106 (364)
                      ...+.|+..+.++. -++-+|+||+++|+...++.+++.+.++|+|++..                ...-..|.+++++|
T Consensus       187 ~~~l~~a~~a~~~g-li~PiLVG~~~kI~~~A~~~~~dl~~~~ivd~~~~----------------~~AA~~Av~lv~~G  249 (465)
T PRK08190        187 ADALRGAIEAAEAG-LIVPVLVGPEAKIRAAAEEAGVDLSGVRIVAVEHS----------------HAAAARAVALARAG  249 (465)
T ss_pred             HHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCC----------------HHHHHHHHHHHHCC
T ss_conf             77899999998779-91589979999999999985998226888707994----------------89999999998679


Q ss_pred             CCEEEEEEC--CHHHHHHHHHHHCCCCCCCC---CCCH--HHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             953999706--42678888875322556763---2200--1105588984599861327778989999999999999998
Q gi|254780498|r  107 QAASVVTAG--NTGALIAMARLCLSRISGVD---RPSL--AAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARS  179 (364)
Q Consensus       107 ~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~---RPal--a~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~  179 (364)
                      ++|+..- |  +|..+|..-.   .+-.|+.   |-.-  ..-+|+...+.++-|++.|+.|+=++-.|+-.-...+++.
T Consensus       250 ~a~~lMK-G~l~T~~ll~avl---~ke~GLrt~r~lSHv~~~~vP~y~k~l~iTDaaini~P~l~~K~~Ii~Nai~~a~~  325 (465)
T PRK08190        250 EVEALMK-GSLHTDELLSAVV---ARDSGLRTERRISHVYAMDVPTYPRPLLITDAAINIAPTLEQKRDIVQNAIDLAHA  325 (465)
T ss_pred             CCCEEEC-CCCCHHHHHHHHH---CCCCCCCCCCEEEEEEEEECCCCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             6658962-8866688889874---24369878986899999944899834997254033488989999999999999998


Q ss_pred             HCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEC-CCCHH------------------HCCCCCCCEEEE
Q ss_conf             56899965899840455555657999999997402457132002-34554------------------532456838997
Q gi|254780498|r  180 VAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKG-FIEAN------------------DIAKGFVDVIVT  240 (364)
Q Consensus       180 ~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~G-niEg~------------------~i~~g~~DVvV~  240 (364)
                       +|+++|||++|+==+.-+---..+-+|..|-+-...++|  .| -|+|-                  .-..|.+|+++.
T Consensus       326 -lG~~~PKVAiLsAvE~vnp~mpsTlDAa~L~kma~rGqi--~g~ivdGPLa~DnAis~eAA~~Kgi~s~VAG~ADiLlv  402 (465)
T PRK08190        326 -LGVEEPKVAILSAVETVNPKIPSTLDAAALCKMADRGQI--TGGIVDGPLAFDNAISAEAAKTKGIVSPVAGQADILVV  402 (465)
T ss_pred             -HCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCC--CCCEEECCCHHHHHCCHHHHHHCCCCCCCCCCCCEEEC
T ss_conf             -199998299996001448889645889999999974896--88488778427753799899646999987887888980


Q ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHH
Q ss_conf             55-12788999988889999999998632220889999998999999997269687087467421614898388998689
Q gi|254780498|r  241 EG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKS  319 (364)
Q Consensus       241 DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a  319 (364)
                      -- =+||++-|+..=++                                     ....+++++|-+-|||-.-.+-+..+
T Consensus       403 PdieaGN~l~K~l~~~a-------------------------------------~a~~AGiv~GakvPIvLtSRaDs~~~  445 (465)
T PRK08190        403 PDLEAGNMLAKQLTYLA-------------------------------------GADAAGIVLGARVPIILTSRADSLRA  445 (465)
T ss_pred             CCHHHHHHHHHHHHHHC-------------------------------------CCCEEEEEECCCCCEEECCCCCCHHH
T ss_conf             87477639999999857-------------------------------------98778889836787897278997888


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999999999999607
Q gi|254780498|r  320 IFNVLGIAHNMSQNG  334 (364)
Q Consensus       320 ~~~ai~~a~~~~~~~  334 (364)
                      =.+.+-+|....+..
T Consensus       446 kl~S~AlA~l~a~~~  460 (465)
T PRK08190        446 RLASCALALLVAHAR  460 (465)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999987


No 19 
>TIGR03270 methan_mark_4 putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases.
Probab=99.36  E-value=4.5e-11  Score=89.72  Aligned_cols=179  Identities=25%  Similarity=0.355  Sum_probs=125.2

Q ss_pred             HHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             99999985499539997064--26788888753225567632200110558898-4599861327778989999999999
Q gi|254780498|r   97 WRAIEAVKKNQAASVVTAGN--TGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQLSILG  173 (364)
Q Consensus        97 ~~a~~lvk~g~aDa~VSaGn--TGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~qfA~mG  173 (364)
                      ..-++++++|++|+.|- |+  |..+|..-   .+.+..+.|-++-.   +.+| +++|-|||.|..++-++.++++.-+
T Consensus         8 ~~li~~l~~g~~d~~vR-Gsl~as~~l~~L---k~~~g~~~r~slL~---~~~g~~f~lapvgIde~~~~~~K~~Ii~~a   80 (202)
T TIGR03270         8 EELIDDLVNGRLDAAVR-GSLSSSNTIREL---KKALGKIYRASILE---TADGRIFLLAPVGIDEGWTISDKVKIIELA   80 (202)
T ss_pred             HHHHHHHHCCCCCEEEE-ECCCHHHHHHHH---HHHCCCEEEEEEEE---CCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999986686566885-044288899999---97327357435332---478978996465225786889999999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCC-----CHHHHHHHHHHHHCCCCCCCEECCCC--HHH-----CCCCCCCEEE-E
Q ss_conf             999998568999658998404555556-----57999999997402457132002345--545-----3245683899-7
Q gi|254780498|r  174 SFFARSVAGINCPSIGLLNVGTEEIKG-----NDVLQESARLLRGECCGAFKYKGFIE--AND-----IAKGFVDVIV-T  240 (364)
Q Consensus       174 s~yak~~~~~~~PrVgLLNiG~E~~KG-----~~~~kea~~LL~~~~~~~~nF~GniE--g~~-----i~~g~~DVvV-~  240 (364)
                      +-++|. +|++ ||||+|+-|.=..-|     ...+.++-.+++.       +.+.++  -+.     -..|.+||++ -
T Consensus        81 ~~~~r~-lGie-PKVAvLS~grl~d~gr~~~Id~si~d~e~~~~~-------~~~~~~a~h~gIliE~av~~~adiiiaP  151 (202)
T TIGR03270        81 SEFLRR-LGRE-PKVAVLSGGRLGDVGRSPEVDRSIADGELIARL-------LKDGMEIEHYGILIEEALKDGSNVIIAP  151 (202)
T ss_pred             HHHHHH-CCCC-CCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHH-------HCCCCHHEECCEEEEHHHCCCCCEEEEC
T ss_conf             999998-0999-855988644021057675422158758999986-------3055000243253105445878989815


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHH
Q ss_conf             55127889999888899999999986322208899999989999999972696870874674216148983889986899
Q gi|254780498|r  241 EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSI  320 (364)
Q Consensus       241 DGFtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~  320 (364)
                      ||-+||+.-|+.-=+                    +               ..+.| ||+++|.+.++|-+-.+.+...+
T Consensus       152 Dg~sGNllfr~l~~l--------------------~---------------~~~~~-Ga~vlg~~~~~VdTSRa~s~e~y  195 (202)
T TIGR03270       152 DGISGNLIFRSLALV--------------------G---------------GGRSY-GAPVLNDEGVFVDTSRSQTAEGY  195 (202)
T ss_pred             CCCHHHHHHHHHHHH--------------------C---------------CCCCC-CCEEECCCCCEEECCCCCCHHHH
T ss_conf             721202999999997--------------------4---------------87656-73012687617976767655788


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780498|r  321 FNVLGIA  327 (364)
Q Consensus       321 ~~ai~~a  327 (364)
                      +|||.+|
T Consensus       196 ~~al~lA  202 (202)
T TIGR03270       196 YNALKLA  202 (202)
T ss_pred             HHHHHCC
T ss_conf             7777529


No 20 
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=99.27  E-value=6.3e-09  Score=76.19  Aligned_cols=280  Identities=17%  Similarity=0.149  Sum_probs=167.9

Q ss_pred             CCCCEEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCC------CEEEECCCCCC--
Q ss_conf             38982399997468--777817779999999985799179997898999999862697515------57997785201--
Q gi|254780498|r    8 QGGNVDTISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKE------RSCFHHCEVSI--   77 (364)
Q Consensus         8 ~~~~m~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~------ri~Ii~a~~vI--   77 (364)
                      ++.+.+||+| .||  .--||+.+++.........++..|+++|+.+.++...+.......      .+.+.+-+...  
T Consensus         1 m~~~~lrIaI-T~GDPaGIGPEIilKal~~~~~~~~~~~~vviGd~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~   79 (329)
T PRK01909          1 MRPQPLQIAI-TTGEPAGVGPELTVQALADAATRWPDARFTVLGDAALLAARAAAVGVDWARLAAGGHVSVAHRALAAPA   79 (329)
T ss_pred             CCCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCHHHHCCCCCCCEECCCCCCCC
T ss_conf             9999976999-758885017999999998657546898889997999999999983998355046897515216777878


Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCCCCC-
Q ss_conf             77830679997137642799999998549953999706-426788888------7532255676322001105588984-
Q gi|254780498|r   78 AMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTVKGK-  149 (364)
Q Consensus        78 ~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~~g~-  149 (364)
                      .....-...=+-.  -.|+..|++++++|++||+|.+= |-.++-.++      +-+|...-|..++..+-.-.....- 
T Consensus        80 ~~G~~~~~~g~~~--~~~l~~Av~~~~~g~~dalVTaPInK~~i~~aG~~f~GHTE~La~~~~~~~~~Mml~~~~~~~Lr  157 (329)
T PRK01909         80 EAGKLDAANGRYV--LDLLDAAIDGALAGRYDAIVTAPLQKSTINDAGVPFTGHTEYLAERTHTPRVVMMLAGTGERPLR  157 (329)
T ss_pred             CCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEE
T ss_conf             7898088999999--99999999999759888999771289999867999898789999983899759999866998379


Q ss_pred             EEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCCHH---HHHHHHHHHHCC
Q ss_conf             5998-------61327778989999999999999998568999658998--4--04555556579---999999974024
Q gi|254780498|r  150 CIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGNDV---LQESARLLRGEC  215 (364)
Q Consensus       150 ~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~~~---~kea~~LL~~~~  215 (364)
                      ++++       |+-.++  +++.+.+-..+-....+.-||+++||++.+  |  -|+.-.=|+|.   +.-|-+-+++. 
T Consensus       158 V~l~T~HipLk~V~~~I--t~~~I~~~i~~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~-  234 (329)
T PRK01909        158 VALATTHLPLRDVSAAL--TIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGENGYLGREEIDVIEPALARARAA-  234 (329)
T ss_pred             EEEECCCCCHHHHHHHH--CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC-
T ss_conf             99845661199999842--347999999999999998448889859999508987655666337788899999999847-


Q ss_pred             CCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57132002345545324----5683899755-127889999888899999999986322208899999989999999972
Q gi|254780498|r  216 CGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEG  290 (364)
Q Consensus       216 ~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~  290 (364)
                        .++-.|..-++-+|.    ++.|+|||== =.|=|.+|+..                                     
T Consensus       235 --gi~v~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~-------------------------------------  275 (329)
T PRK01909        235 --GIDARGPYPADTLFQPRHLEDADCVLAMFHDQGLPVLKYAT-------------------------------------  275 (329)
T ss_pred             --CCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHCC-------------------------------------
T ss_conf             --99620067937898997577989999855012358787535-------------------------------------


Q ss_pred             CCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf             696870874674216148----------983889986899999999999996070
Q gi|254780498|r  291 FDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQNGF  335 (364)
Q Consensus       291 ~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~~~~  335 (364)
                        .+ .|=-+-|||.=+-          |-+-|.++..++.+||++|.++++++-
T Consensus       276 --f~-~~vn~TlGLp~iRtS~dHGTA~diAGkg~A~~~s~~~Ai~~A~~~a~~r~  327 (329)
T PRK01909        276 --FG-EGINVTLGLPIIRTSVDHGTALDLAGTGRADPGSMIAAIDTAVTMARHRR  327 (329)
T ss_pred             --CC-CCEEEECCCCCEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             --78-73799348991067899871566627898996999999999999998533


No 21 
>TIGR02706 P_butyryltrans phosphate butyryltransferase; InterPro: IPR014079   Members of this family are phosphate butyryltransferase enzymes, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. This entry does not include the homologue from Thermotoga maritima, whose activity on butyryl-CoA is only 30 0f its activity with acetyl-CoA..
Probab=99.16  E-value=1.8e-08  Score=73.32  Aligned_cols=248  Identities=17%  Similarity=0.237  Sum_probs=174.9

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             98239999746877781777999999998579917999789899999986269751557997785201778306799971
Q gi|254780498|r   10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRR   89 (364)
Q Consensus        10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~   89 (364)
                      -.+.|||| |.=-|   ++|+++...|. ++.-.+++|+||+++|+.+.++.+...+.++|+|.++.             
T Consensus        11 ~~~K~vAV-A~A~D---E~VlEAvk~A~-E~~ia~aiLvGD~~~I~~ia~~~~~~l~d~eIv~~~~~-------------   72 (295)
T TIGR02706        11 CPKKTVAV-AVAQD---EPVLEAVKEAK-EKGIARAILVGDKEKIEEIAKKIGMNLDDYEIVNAPSV-------------   72 (295)
T ss_pred             CCCCEEEE-EECCC---CHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCH-------------
T ss_conf             78972999-85089---24799999986-55906788847889999999984898230132228986-------------


Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHH---C--CCCCCCCEEEEECCCCCCCC
Q ss_conf             37642799999998549953999706--42678888875322556763220011---0--55889845998613277789
Q gi|254780498|r   90 GRNVSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAA---F--WPTVKGKCIILDVGATIGST  162 (364)
Q Consensus        90 kK~~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~---~--~Pt~~g~~vllD~GAN~d~~  162 (364)
                       +  -+=..|.++|-+|+||.+-= |  +|..++.+   +|-+--|...--.++   +  .|..+.-.+|-|+.-|+-|+
T Consensus        73 -~--~AA~~AV~lVs~~~AD~lMK-G~V~Ta~~Lrs---VLnKE~GLRTGk~lSHVAVFe~P~~dRLl~lTDaAfN~yP~  145 (295)
T TIGR02706        73 -K--KAALLAVRLVSTGKADMLMK-GLVDTATFLRS---VLNKEVGLRTGKVLSHVAVFEVPGFDRLLFLTDAAFNIYPE  145 (295)
T ss_pred             -H--HHHHHHHHHHHCCCCCEEEC-CCCCHHHHHHH---HHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf             -8--99999999862898646744-86555789888---85000121048712206771589855143231266502878


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC---------------
Q ss_conf             899999999999999985689996589984-0455555657999999997402457132002345---------------
Q gi|254780498|r  163 VSHMVQLSILGSFFARSVAGINCPSIGLLN-VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE---------------  226 (364)
Q Consensus       163 ~~~L~qfA~mGs~yak~~~~~~~PrVgLLN-iG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE---------------  226 (364)
                      =++..|+=.=.-.-|+.+ ||+.|||+.|- |=+= +=.=+.+-.|..|=+      ++=-|-|+               
T Consensus       146 Lk~K~~ii~NaV~VAha~-Gi~~PkVA~l~AVEvV-NP~M~aTvDAA~Lak------M~~RGQIkGCivDGPLALDnA~S  217 (295)
T TIGR02706       146 LKDKVQIINNAVKVAHAI-GIEVPKVAVLAAVEVV-NPKMPATVDAAALAK------MSDRGQIKGCIVDGPLALDNAIS  217 (295)
T ss_pred             HHHHHHHHHHHHHHHHCC-CCCCCCEEEECCEEEE-CCCCHHHHHHHHHHH------HCCCCCEEEEEECCCHHHHHHHH
T ss_conf             789999976475502321-7886861153026356-688715799999840------02068456788747344457731


Q ss_pred             ----------HHHCCCCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             ----------5453245683899755-12788999988889999999998632220889999998999999997269687
Q gi|254780498|r  227 ----------ANDIAKGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRN  295 (364)
Q Consensus       227 ----------g~~i~~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~  295 (364)
                                ||+ --|++|+++-=- =+|||+-||.==+                                     .+.
T Consensus       218 ~eAA~HKgi~~r~-VAG~ADILL~P~IeaGN~lYK~LtY~-------------------------------------a~~  259 (295)
T TIGR02706       218 EEAAKHKGIEGRE-VAGKADILLVPDIEAGNVLYKTLTYF-------------------------------------AKS  259 (295)
T ss_pred             HHHHHCCCCCCCC-CCCCCCEEECCCCCHHHHHHHHHHHH-------------------------------------HHH
T ss_conf             8999708856773-26788542128720256699999999-------------------------------------711


Q ss_pred             CCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             087467421614898388998689999999999
Q gi|254780498|r  296 FNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH  328 (364)
Q Consensus       296 ~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~  328 (364)
                      -+|++|.|-+.|||=+-.+=+...=.|.|=+|.
T Consensus       260 k~gg~l~GtkaPvvLTSRADS~E~K~~SIALAa  292 (295)
T TIGR02706       260 KNGGILVGTKAPVVLTSRADSFETKLNSIALAA  292 (295)
T ss_pred             CCCEEECCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             114586037787363355530446899999999


No 22 
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.86  E-value=3.5e-06  Score=58.86  Aligned_cols=272  Identities=20%  Similarity=0.238  Sum_probs=158.9

Q ss_pred             EEEEEEECCCCC---CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC----------CC
Q ss_conf             239999746877---78177799999999857991799978989999998626975155799778520----------17
Q gi|254780498|r   12 VDTISLDLMGGD---LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVS----------IA   78 (364)
Q Consensus        12 m~kIAVDaMGGD---~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~v----------I~   78 (364)
                      |.+|+|-.  ||   -||+.+++.... ........++++|+.+.++...+..+...+...|...++.          +.
T Consensus         3 ~kpIaIT~--GDPaGIGPEIi~Kal~~-~~~~~~~~~vviGd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~~l~v~~   79 (336)
T PRK05312          3 MRPLALTL--GDPAGIGPEIALKAWLA-RRELGLPPFFLIGDPALLAARARLLGLAVPIAEVSDPAEAAAAFADALPVLP   79 (336)
T ss_pred             CCCEEEEC--CCCCHHHHHHHHHHHHH-HHHCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCEEEEEC
T ss_conf             99889973--78633169999999861-4452699989995999999999985999874783887787443588026850


Q ss_pred             CCCHHHHHHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCC----CCH
Q ss_conf             78306799971376--------42799999998549953999706-426788888------753225567632----200
Q gi|254780498|r   79 MDERPADALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDR----PSL  139 (364)
Q Consensus        79 mde~P~~AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~R----Pal  139 (364)
                      ... +. .+.-++.        -.|+..|++++++|++||+|.+= |--++-.++      +-+|..+-|.+.    -.+
T Consensus        80 ~~~-~~-~~~~G~~s~~~g~~a~~~l~~Ai~~~~~g~idaiVT~PInK~~i~~aG~~f~GHTE~LA~l~g~~~~~~~~~v  157 (336)
T PRK05312         80 LPH-AA-PVTPGKPDPANAAGVIAAIERAVALVLSGAAAAVVTNPIAKKVLYEAGFAFPGHTEFLAELAGVALGKPVQPV  157 (336)
T ss_pred             CCC-CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf             676-66-7789985889999999999999999974998899978758698973578889869999998554446777426


Q ss_pred             HHCCCCCCCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCCHH---HH
Q ss_conf             11055889845998-------61327778989999999999999998568999658998--4--04555556579---99
Q gi|254780498|r  140 AAFWPTVKGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGNDV---LQ  205 (364)
Q Consensus       140 a~~~Pt~~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~~~---~k  205 (364)
                      |.++ +.+=+++++       |+-..+  +++.+.+-..+-....+..+|+++||++++  |  -|+.-.-|+|.   +.
T Consensus       158 Mml~-~~~LrV~l~TtHIpLk~V~~~I--t~~~I~~~i~l~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~  234 (336)
T PRK05312        158 MMLA-GPQLRVVPVTIHIPLRDVPAAL--TTELIVATARITAADLRRRFGIAAPRLAVAGLNPHAGEGGALGREDIDIIA  234 (336)
T ss_pred             EEEE-CCCCEEEEECCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             8861-5873688853350599997654--489999999999999998549888728999708986545667663488899


Q ss_pred             HHHHHHHHCCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             999997402457132002345545324----5683899755-12788999988889999999998632220889999998
Q gi|254780498|r  206 ESARLLRGECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLI  280 (364)
Q Consensus       206 ea~~LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~  280 (364)
                      -|-+-+++.   .++..|.+-++-+|.    +..|+|||== =.|=|.+|+..-                          
T Consensus       235 Pai~~~~~~---gi~v~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~f--------------------------  285 (336)
T PRK05312        235 PAIEQLRAE---GIDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDF--------------------------  285 (336)
T ss_pred             HHHHHHHHC---CCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCC--------------------------
T ss_conf             999999978---994678989668754445068899998341336797874458--------------------------


Q ss_pred             HHHHHHHHHHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999972696870874674216148----------98388998689999999999999607
Q gi|254780498|r  281 KKSLREVKEGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       281 ~~~l~~~~~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                                    ..|=-+-|||.=+-          |-+.|.++..++.+||+.|.++++++
T Consensus       286 --------------~~~vn~tlGLp~iRtS~dHGTA~diAgk~~A~~~s~~~Ai~~A~~~~~~r  335 (336)
T PRK05312        286 --------------DEGVNVTLGLPFIRTSPDHGTAFDIAGKGIARPDSLIAALRLAAQMAANR  335 (336)
T ss_pred             --------------CCCEEEECCCCCEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             --------------87479813899106789987046661789899699999999999999715


No 23 
>PRK04607 consensus
Probab=98.84  E-value=1.2e-05  Score=55.40  Aligned_cols=272  Identities=14%  Similarity=0.122  Sum_probs=155.4

Q ss_pred             CCCEEEEEEECCCCCC--CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEE---------------
Q ss_conf             8982399997468777--81777999999998579917999789899999986269751557997---------------
Q gi|254780498|r    9 GGNVDTISLDLMGGDL--GARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFH---------------   71 (364)
Q Consensus         9 ~~~m~kIAVDaMGGD~--~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii---------------   71 (364)
                      +.++.|||| .||-=.  ||+.+++    .+++....+++++|+.+.+.......+...+...+.               
T Consensus         2 M~~~k~IaI-T~GDPaGIGpEIilk----~~~~~~~~~~viigd~~~l~~~~~~lg~~~~~~~~~~~~~~~~~~~~~l~v   76 (330)
T PRK04607          2 MNSIKRIVV-TAGEPAGIGPDLVLA----LSKEDWPHQLVVCADKQLLAERAAQLGIQVQLLDYNADLAPQAQQAGTLLV   76 (330)
T ss_pred             CCCCCCEEE-ECCCCCHHHHHHHHH----HHHHCCCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEE
T ss_conf             988994899-558876217999999----851358888799989999999999849994575558665566244884588


Q ss_pred             -CCCC--CCCCCC-HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHH
Q ss_conf             -7852--017783-0679997137642799999998549953999706-426788888------7532255676322001
Q gi|254780498|r   72 -HCEV--SIAMDE-RPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLA  140 (364)
Q Consensus        72 -~a~~--vI~mde-~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala  140 (364)
                       +.+.  -+...+ ++..+ +.-  -.|+..|++++++|++||+|.+= |--++-.++      +-+|...-+..++..+
T Consensus        77 ~~~~~~~~~~~G~~s~~~g-~~~--~~sl~~Av~~~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~LA~~~~~~~~~Mm  153 (330)
T PRK04607         77 EHIELAEPVVAGQLNEANG-HYV--LKTLERAALGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSNTPLVVMM  153 (330)
T ss_pred             ECCCCCCCCCCCCCCHHHH-HHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf             4356678778897398999-999--9999999999972987889977314999985799999817898754146645554


Q ss_pred             HCCCCCCCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCCH---HHHH
Q ss_conf             1055889845998-------61327778989999999999999998568999658998--4--0455555657---9999
Q gi|254780498|r  141 AFWPTVKGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGND---VLQE  206 (364)
Q Consensus       141 ~~~Pt~~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~~---~~ke  206 (364)
                      -.  +.+=.++++       |+-.++  +.+.+.+.-.+-....+.-+|+++||++++  |  -|+.-.-|+|   .+.-
T Consensus       154 l~--~~~LrV~lvTtHipLk~V~~~i--t~~~I~~~i~~~~~~l~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~P  229 (330)
T PRK04607        154 LA--TEGLRVALVTTHIPLAYVSKAV--TEERLEQIIDILHKDLVEKFAIAEPKIYVCGLNPHAGEDGCLGREEIETITP  229 (330)
T ss_pred             EC--CCCEEEEEECCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             30--7970899961468799999998--0999999999999999986288898189995088765567776443878999


Q ss_pred             HHHHHHHCCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99997402457132002345545324----5683899755-127889999888899999999986322208899999989
Q gi|254780498|r  207 SARLLRGECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIK  281 (364)
Q Consensus       207 a~~LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~  281 (364)
                      |-+-|++.  ..++..|..-++-+|.    ++.|+|||== =.|=|.+|+..-                           
T Consensus       230 aI~~l~~~--~gi~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~~~f---------------------------  280 (330)
T PRK04607        230 TLEKLRQE--KGMNLVGPLPADTIFNEKYLNDADAVLGMYHDQVLPVLKYKGF---------------------------  280 (330)
T ss_pred             HHHHHHHH--CCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCC---------------------------
T ss_conf             99998875--5967689968177765420358999998351442176664256---------------------------


Q ss_pred             HHHHHHHHHCCHHHCCCEEEEEECCE----------EEEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             99999997269687087467421614----------898388998689999999999999607
Q gi|254780498|r  282 KSLREVKEGFDPRNFNGGVLLGVDGL----------VVKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       282 ~~l~~~~~~~d~~~~gGa~llGl~g~----------vik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                                   ..|=-+-|||-=+          =|-+-|.++..++.+||++|.++++++
T Consensus       281 -------------~~~Vn~TlGLP~iRtS~dHGTa~dIag~g~A~~~S~~~Ai~~A~~~~~~r  330 (330)
T PRK04607        281 -------------GRSVNITLGLPFIRTSVDHGTALELAGTGQADTGSFRTALTHAIELVEKK  330 (330)
T ss_pred             -------------CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             -------------76379954899247789987046661789899699999999999998549


No 24 
>PRK02848 consensus
Probab=98.75  E-value=2.4e-05  Score=53.60  Aligned_cols=276  Identities=17%  Similarity=0.134  Sum_probs=157.7

Q ss_pred             CCCEEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC----------
Q ss_conf             8982399997468--7778177799999999857991799978989999998626975155799778520----------
Q gi|254780498|r    9 GGNVDTISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVS----------   76 (364)
Q Consensus         9 ~~~m~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~v----------   76 (364)
                      .....+||| .||  .--||+.+++....- +......++++|+.+.++...+..+...+ +..++..+.          
T Consensus         4 ~~~KP~IaI-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~   80 (341)
T PRK02848          4 AAAKPVIAL-TLGDPAGIGPELIAKLLADP-DVREKANIVLVGDRWLWEEGMRIAGVEVD-LEPVDSLAEARFATARPAF   80 (341)
T ss_pred             CCCCCEEEE-ECCCCCHHHHHHHHHHHHCH-HHCCCCCEEEEECHHHHHHHHHHCCCCCC-EEECCCHHHCCCCCCCCEE
T ss_conf             899998999-34787433899999998474-34069988999899999999998499985-3563864544513278348


Q ss_pred             CCCCCHHHHHHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHH
Q ss_conf             1778306799971376--------42799999998549953999706-426788888------75322556763220011
Q gi|254780498|r   77 IAMDERPADALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAA  141 (364)
Q Consensus        77 I~mde~P~~AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~  141 (364)
                      +..+......+.-++.        -.|+..|++++++|++||+|.+= |-.++..++      +..|...-|+..+..+-
T Consensus        81 i~~~~~~~~~~~~G~~s~~~g~~~~~si~~Av~~~~~g~~~alVT~PInK~~l~~aG~~f~GHTE~la~~~~~~~~~~~~  160 (341)
T PRK02848         81 LDLDTIDPADVVRGEATAAGGRYALETLDLALDLARAGDVDAICFAPLNKQAMKLAGLRHEDELHWFAEYLGFTGYFCEF  160 (341)
T ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf             50666662447879858899999999999999999739978899776688999525789874799999984889750377


Q ss_pred             CCCCCCC-CEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHH
Q ss_conf             0558898-45998-------613277789899999999999999985689996589984----04555556579---999
Q gi|254780498|r  142 FWPTVKG-KCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQE  206 (364)
Q Consensus       142 ~~Pt~~g-~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~ke  206 (364)
                       + ...+ .++++       |+--+  -+.+.+.+....-..+.+. +++++||++.+-    -|+.-.-|+|.   +.-
T Consensus       161 -~-~~~~L~v~~~TtHipLk~V~~~--It~~~I~~~i~~~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~P  235 (341)
T PRK02848        161 -N-VLDDLWTARVTSHIPLKDVAAN--LSQERILDAIELIYRSLRR-AGVARPRIAVAALNPHGGDGGSFGREEIDIIEP  235 (341)
T ss_pred             -E-ECCCEEEEEECCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             -6-2386478985168539999998--7399999999999999998-189898579995489876567876155898999


Q ss_pred             HHHHHHHCCCCCCCEECCCCHHHCCC----CCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99997402457132002345545324----56838997551-27889999888899999999986322208899999989
Q gi|254780498|r  207 SARLLRGECCGAFKYKGFIEANDIAK----GFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIK  281 (364)
Q Consensus       207 a~~LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~  281 (364)
                      |-+.|++.   .+|..|.+-++-+|.    ++.|+|||==- .|=+.+|+..-         .                 
T Consensus       236 AI~~l~~~---gi~v~GP~pADt~F~~~~~~~~D~vlaMYHDQglip~K~l~f---------~-----------------  286 (341)
T PRK02848        236 AVEKARAR---GIPVDGPFPADTIFLKAQRGEFDAVVTMYHDQGQIAIKLMGF---------S-----------------  286 (341)
T ss_pred             HHHHHHHC---CEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHCCC---------C-----------------
T ss_conf             99999978---900879988188988865278999998352453065653357---------8-----------------


Q ss_pred             HHHHHHHHHCCHHHCCCEEEEEECC--------E--EEEECCCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf             9999999726968708746742161--------4--8983889986899999999999996070
Q gi|254780498|r  282 KSLREVKEGFDPRNFNGGVLLGVDG--------L--VVKGHGSSDAKSIFNVLGIAHNMSQNGF  335 (364)
Q Consensus       282 ~~l~~~~~~~d~~~~gGa~llGl~g--------~--vik~HG~s~~~a~~~ai~~a~~~~~~~~  335 (364)
                                    .+=-+-|||.=        +  =|-+.|.+|+..+.+||+.|.++.+++-
T Consensus       287 --------------~~vN~TlGLp~iRtSpDHGTa~diagk~~A~~~S~~~Ai~~A~~~~~~r~  336 (341)
T PRK02848        287 --------------RGVTVQGGLPIPITTPAHGTAYDIAGKGIADVGATRQAFLIACRMGAARR  336 (341)
T ss_pred             --------------CCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------73798348992167899870466507898996999999999999999644


No 25 
>PRK03367 consensus
Probab=98.70  E-value=1.5e-05  Score=54.96  Aligned_cols=267  Identities=14%  Similarity=0.143  Sum_probs=153.9

Q ss_pred             EEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCC----------------EEEECCC
Q ss_conf             39999746877--78177799999999857991799978989999998626975155----------------7997785
Q gi|254780498|r   13 DTISLDLMGGD--LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKER----------------SCFHHCE   74 (364)
Q Consensus        13 ~kIAVDaMGGD--~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~r----------------i~Ii~a~   74 (364)
                      .||+| .||==  -||+.+++.    +++....+++++||...+....+......+.                +.+++..
T Consensus         5 ~~IaI-T~GDPaGIGPEIi~kl----~~~~~~~~~iv~gd~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~   79 (329)
T PRK03367          5 QRVVI-TPGEPAGIGPDLVVQL----AQREWPVELVVCADPALLTDRAAMLGLPLTLRPYSPDQPAQPQTAGTLTLLPVA   79 (329)
T ss_pred             CCEEE-ECCCCCHHHHHHHHHH----HHCCCCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf             97899-8788753189999999----700689888999789999999997599945887388765664658834786167


Q ss_pred             CC--CCCCC-HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCC
Q ss_conf             20--17783-0679997137642799999998549953999706-426788888------75322556763220011055
Q gi|254780498|r   75 VS--IAMDE-RPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWP  144 (364)
Q Consensus        75 ~v--I~mde-~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~P  144 (364)
                      ..  +.... ++. +=+--  -.|+..|++++++|++||+|.+= |-.++-.++      +-+|...-+..++.. -+. 
T Consensus        80 ~~~~~~~G~~s~~-~g~~~--~~~l~~Av~~~~~g~~~alVTaPInK~~i~~aG~~f~GHTE~La~~~~~~~~~M-ml~-  154 (329)
T PRK03367         80 LRAPVTPGQLAVE-NGHYV--VETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVM-MLA-  154 (329)
T ss_pred             CCCCCCCCCCCHH-HHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEE-EEE-
T ss_conf             6778888972889-99999--999999999998298789997741589998689998983999999868996576-663-


Q ss_pred             CCCCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCCH---HHHHHHHH
Q ss_conf             889845998-------61327778989999999999999998568999658998--4--0455555657---99999999
Q gi|254780498|r  145 TVKGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGND---VLQESARL  210 (364)
Q Consensus       145 t~~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~~---~~kea~~L  210 (364)
                      +.+=+++++       |+-.  ..+++.+.+.-..-....+.-+|+++||+|.+  |  -|+.-.-|+|   .+.-|-+-
T Consensus       155 ~~~LrV~lvTtHipLk~V~~--~It~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~  232 (329)
T PRK03367        155 TEELRVALATTHLPLRAIAD--AITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDE  232 (329)
T ss_pred             CCCCEEEEECCCCCHHHHHH--HCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             58748998503632899886--3899999999999999999835988985999950898765677773558889999999


Q ss_pred             HHHCCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             7402457132002345545324----5683899755-1278899998888999999999863222088999999899999
Q gi|254780498|r  211 LRGECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLR  285 (364)
Q Consensus       211 L~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~  285 (364)
                      |++.   .++..|..-++-+|.    ++.|+|||== =.|=+.+|+..-                               
T Consensus       233 l~~~---gi~~~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~~~f-------------------------------  278 (329)
T PRK03367        233 LRAQ---GMNLNGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGF-------------------------------  278 (329)
T ss_pred             HHHC---CCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCC-------------------------------
T ss_conf             9976---998789968357878864578999998251452066653046-------------------------------


Q ss_pred             HHHHHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             99972696870874674216148----------98388998689999999999999607
Q gi|254780498|r  286 EVKEGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       286 ~~~~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                               ..|=-+-|||.=+-          |-+-|.+|..++.+||++|.+++++.
T Consensus       279 ---------~~~VnvtlGLp~iRtS~dHGTa~diagkg~A~~~s~~~Ai~~A~~~~~n~  328 (329)
T PRK03367        279 ---------GRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNT  328 (329)
T ss_pred             ---------CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             ---------76179963899247789987056662789899699999999999998607


No 26 
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=98.69  E-value=5.1e-06  Score=57.84  Aligned_cols=272  Identities=17%  Similarity=0.184  Sum_probs=153.5

Q ss_pred             EEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCC---------CCCCCC
Q ss_conf             39999746877--7817779999999985799179997898999999862697515579977852---------017783
Q gi|254780498|r   13 DTISLDLMGGD--LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEV---------SIAMDE   81 (364)
Q Consensus        13 ~kIAVDaMGGD--~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~---------vI~mde   81 (364)
                      .+||| .||-=  -||+.+++.... .+-.....++++|+.+.++...+..+...+.-.|-+.++         ++....
T Consensus         4 P~IaI-T~GDPaGIGpEIi~Kal~~-~~~~~~~~~viigd~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~i~vi~~~~   81 (333)
T PRK03743          4 PIIAI-PMGDPAGIGPEIVVKSLND-KEIYDVCKPVVIGDAKVLEQAMKFCGVDLNINKIKTPAEGKYELGTIDLIDLGN   81 (333)
T ss_pred             CEEEE-ECCCCCHHHHHHHHHHHHC-CCHHCCCCEEEEECHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCEEEECCC
T ss_conf             98999-3888517489999999958-603408999999889999999998098985367288767435468712774687


Q ss_pred             HHHHHHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             06799971376--------42799999998549953999706-426788888------7532255676322001105588
Q gi|254780498|r   82 RPADALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        82 ~P~~AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                      .....+.-++.        -.|+..|++++++|++||+|.+= |-.++-.++      +-+|..+-+...+..+-.  +.
T Consensus        82 ~~~~~~~~G~~s~~~g~~a~~~l~~A~~~~~~g~~dalVT~PInK~~l~~ag~~f~GHTE~La~~~~~~~~~mml~--~~  159 (333)
T PRK03743         82 VDIDELKWGKVQALAGKAAFEYIKKSVELAKAGKVDAIATTPINKEALKAAGVNYIGHTEILADLTDTEDPLTMFE--VH  159 (333)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCEEHEE--CC
T ss_conf             7623267798688999999999999999997398677987886455475448998987999999867886120001--28


Q ss_pred             CCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCC---HHHHHHHHHHH
Q ss_conf             9845998-------61327778989999999999999998568999658998--4--045555565---79999999974
Q gi|254780498|r  147 KGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGN---DVLQESARLLR  212 (364)
Q Consensus       147 ~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~---~~~kea~~LL~  212 (364)
                      +=.++++       |+-.+  -+.+.+.+....-..+.|. +++.+||+|++  |  -|+.-.=|+   +.+.-|-+.|+
T Consensus       160 ~L~V~l~TtHipLk~V~~~--it~~~I~~~i~~~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~lk  236 (333)
T PRK03743        160 NLRVFFLTRHVSLRKACDL--VTKERVLDYIIRCTKALEK-LGVKNPKMAVAGLNPHSGEHGLFGREEMDEIVPAIEEAQ  236 (333)
T ss_pred             CCEEEEECCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             7379987788888999774--5489999999999999998-099998289998489876667666413113099999999


Q ss_pred             HCCCCCCCEECCCCHHHCC----CCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0245713200234554532----45683899755-127889999888899999999986322208899999989999999
Q gi|254780498|r  213 GECCGAFKYKGFIEANDIA----KGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREV  287 (364)
Q Consensus       213 ~~~~~~~nF~GniEg~~i~----~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~  287 (364)
                      +.   .++..|.+-++-+|    .++.|++||== =.|=|.+|+..-                                 
T Consensus       237 ~~---gi~v~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f---------------------------------  280 (333)
T PRK03743        237 KM---GINVVGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDF---------------------------------  280 (333)
T ss_pred             HC---CCCEECCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHCCC---------------------------------
T ss_conf             77---986768999567777511588898997674542076652357---------------------------------


Q ss_pred             HHHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             972696870874674216148----------98388998689999999999999607
Q gi|254780498|r  288 KEGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       288 ~~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                             ..|=-+-|||.=+-          |.+-|.++..++.+||+.|.+++++.
T Consensus       281 -------~~~Vn~tlGLp~irtSpdHGTAfdIagk~~A~~~s~~~Ai~~a~~~a~~~  330 (333)
T PRK03743        281 -------ERTISITNGLPFLRTSVDHGTAFDIAGTGIASSVSMEEAIKLAAKYAPKF  330 (333)
T ss_pred             -------CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             -------87479946999247789987046661789899699999999999999874


No 27 
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=98.68  E-value=1.7e-05  Score=54.60  Aligned_cols=271  Identities=19%  Similarity=0.184  Sum_probs=160.3

Q ss_pred             EEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC----------CCCCCCC
Q ss_conf             99997468--77781777999999998579917999789899999986269751557997785----------2017783
Q gi|254780498|r   14 TISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCE----------VSIAMDE   81 (364)
Q Consensus        14 kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~----------~vI~mde   81 (364)
                      +||| .||  .--||+.+++..... +.....+++++|+.+.++...+..++..+..+|.+..          .++..+-
T Consensus         6 ~IaI-T~GDPaGIGpEIilKal~~~-~~~~~~~~viigd~~~l~~~~~~lg~~~~~~~i~~~~~~~~~~~~~i~v~~~~~   83 (334)
T PRK00232          6 RIAI-TPGDPAGIGPELIAKLLAQP-DVRWPAHLVVIADRALLEERAAILGLPLDLRPYSPDAPAAPQAAGTLTLLDVDL   83 (334)
T ss_pred             CEEE-ECCCCCHHHHHHHHHHHHCC-CCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCEEEECCC
T ss_conf             2899-68886353899999998481-304898889998899999999985999706873774554434589825985676


Q ss_pred             HHHHHHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHH------HHHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             06799971376--------42799999998549953999706-42678888------87532255676322001105588
Q gi|254780498|r   82 RPADALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAM------ARLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        82 ~P~~AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~------a~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                      .....+.-++.        -.|+-.|++++++|++||+|.+= |-.++-.+      -+-+|..+-|..++. |-++ +.
T Consensus        84 ~~~~~v~~G~~s~~~g~~~~~~i~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~~~~~-Mml~-~~  161 (334)
T PRK00232         84 LDPADVPFGQLSAANGHYVLETLARALDLALAGEFDAICTAPVNKGAINAAGIPFSGHTEFFAELSGTTGVV-MMLA-TE  161 (334)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCE-EEEE-CC
T ss_conf             753457889868899999999999999999759977898777578999857999898799999986899806-8897-38


Q ss_pred             CCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCC---HHHHHHHHHHH
Q ss_conf             9845998-------613277789899999999999999985689996589984----045555565---79999999974
Q gi|254780498|r  147 KGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGN---DVLQESARLLR  212 (364)
Q Consensus       147 ~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~---~~~kea~~LL~  212 (364)
                      +=.++++       |+--+  -+.+.+.+...+-..+.+.. ++++||+|.+-    -|+.-.=|+   +.+.-|-+.|+
T Consensus       162 ~L~V~l~TtHipLk~V~~~--It~~~I~~~i~~~~~~lk~~-gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~l~  238 (334)
T PRK00232        162 ELRVALVTTHIPLRDVADA--ITPERLERVIRLLHADLRRK-GIAEPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELR  238 (334)
T ss_pred             CEEEEEEEECCHHHHHHHH--CCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             7069999724719999886--69999999999999999972-99898479997289875456666733777999999999


Q ss_pred             HCCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             02457132002345545324----5683899755-127889999888899999999986322208899999989999999
Q gi|254780498|r  213 GECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREV  287 (364)
Q Consensus       213 ~~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~  287 (364)
                      +.   .++..|.+-++-+|.    ++.|++||== =.|=|.+|+..                                  
T Consensus       239 ~~---gi~v~GP~paDt~F~~~~~~~~D~~vamYHDQglip~K~~~----------------------------------  281 (334)
T PRK00232        239 AE---GINLIGPLPADTLFLPAYLGDFDAVVAMYHDQGLPVLKYLG----------------------------------  281 (334)
T ss_pred             HC---CCEEECCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHCC----------------------------------
T ss_conf             78---91288990828887765505899999955243127665235----------------------------------


Q ss_pred             HHHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             972696870874674216148----------98388998689999999999999607
Q gi|254780498|r  288 KEGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       288 ~~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                           .+ .|=-+-|||.=+-          |.+.|-++..++.+||+.|.++.+++
T Consensus       282 -----f~-~~Vn~tlGLp~iRtSpdHGTa~diagk~~A~~~s~~~Ai~~A~~~a~~r  332 (334)
T PRK00232        282 -----FG-RGVNVTLGLPFIRTSVDHGTALDIAGKGIADVGSFITALNLAIRMAANR  332 (334)
T ss_pred             -----CC-CCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             -----67-6279953899147789987066661789899699999999999999852


No 28 
>PRK04507 consensus
Probab=98.64  E-value=5e-05  Score=51.59  Aligned_cols=268  Identities=15%  Similarity=0.178  Sum_probs=154.0

Q ss_pred             EEEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCC-CCHHHH---
Q ss_conf             239999746877--78177799999999857991799978989999998626975155799778520177-830679---
Q gi|254780498|r   12 VDTISLDLMGGD--LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAM-DERPAD---   85 (364)
Q Consensus        12 m~kIAVDaMGGD--~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~m-de~P~~---   85 (364)
                      +.+||| .||==  -||+.+++...   +...+.+++++|+.+.++.........   +++++.++.... .+-+..   
T Consensus         3 ~P~IaI-T~GDPaGIGPEIilK~~~---~~~~~~~~vvigd~~~l~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~   75 (323)
T PRK04507          3 VPSLAL-VPGEPAGIGPELCVRLAQ---QPRSDAHLIAYADPDTLHSAAKALSLP---VRLLDPDQPARAPGDLPLHPVR   75 (323)
T ss_pred             CCEEEE-ECCCCCHHHHHHHHHHHH---CCCCCCCEEEEECHHHHHHHHHHCCCC---EEECCCCCHHHCCCCCEEEECC
T ss_conf             983899-158862669999999986---664589989998999999999866998---1762732043268972252134


Q ss_pred             ---HHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCCC
Q ss_conf             ---9971376--------42799999998549953999706-426788888------75322556763220011055889
Q gi|254780498|r   86 ---ALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTVK  147 (364)
Q Consensus        86 ---AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~~  147 (364)
                         .++-++.        -.|+..|++++++|++||+|.+= |--++-.++      +-+|...-|..  .+|.++ +.+
T Consensus        76 ~~~~~~~G~~~~~~g~~~~~~l~~Av~~~~~g~~~aiVTaPInK~~l~~aG~~f~GHTE~La~~~~~~--~~Mml~-~~~  152 (323)
T PRK04507         76 QAVPTRFGAPDPANAAAVIAGLRGAAGDCLHGRLQGIVTGPVHKAVINAGGIAYTGTTELLAAQAGCP--VVMMLA-NSI  152 (323)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCC--EEEEEE-CCC
T ss_conf             55767689868789999999999999999759977999775369999857999897269998873882--688885-277


Q ss_pred             CCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHHHHHHHH
Q ss_conf             845998-------613277789899999999999999985689996589984----04555556579---9999999740
Q gi|254780498|r  148 GKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQESARLLRG  213 (364)
Q Consensus       148 g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea~~LL~~  213 (364)
                      =+++++       |+-.  .-+.+.+.+....-....+.-+|+++||++.+-    -|+.-.-|+|.   +.-|-+-|++
T Consensus       153 LrV~l~TtHIpLk~V~~--~It~e~I~~~i~l~~~~l~~~fgi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~Pai~~~~~  230 (323)
T PRK04507        153 VRVALVTTHLPLRAVPD--AITADALERCLRITHTAMQRDFGLEHPRIAVLGLNPHAGEDGLLGREELDVVIPVLEQLRG  230 (323)
T ss_pred             CEEEEECCCCCHHHHHH--HCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             47998413477999998--7199999999999999999963998995899604887666676650223232789999996


Q ss_pred             CCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             2457132002345545324----5683899755-1278899998888999999999863222088999999899999999
Q gi|254780498|r  214 ECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVK  288 (364)
Q Consensus       214 ~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~  288 (364)
                      .   .++..|.+-++-+|.    ++.|+|||== =.|=+.+|+..-                                  
T Consensus       231 ~---g~~~~GP~paDt~F~~~~~~~~D~vlamYHDQglip~K~l~f----------------------------------  273 (323)
T PRK04507        231 E---GMQLIGPLPADTAFLPQKLIGFDAVVAMYHDQGLPVLKYSGF----------------------------------  273 (323)
T ss_pred             C---CCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCC----------------------------------
T ss_conf             3---988789968077876642469899998261454487875047----------------------------------


Q ss_pred             HHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             72696870874674216148----------98388998689999999999999607
Q gi|254780498|r  289 EGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQNG  334 (364)
Q Consensus       289 ~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~~~  334 (364)
                            ..|=-+-|||.=+-          |-+.|-+|..++.+||++|.++.+++
T Consensus       274 ------~~~Vn~tlGLP~irtS~dHGta~diag~g~A~~~s~~~Ai~la~~~~~~r  323 (323)
T PRK04507        274 ------EQAVNITLGLPYPRVAVDHGTALELAGRGVADPSSLMAATALCARLAARR  323 (323)
T ss_pred             ------CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             ------87279943899027789987156660789899699999999999998549


No 29 
>PRK03877 consensus
Probab=98.46  E-value=3.6e-05  Score=52.51  Aligned_cols=268  Identities=22%  Similarity=0.264  Sum_probs=154.1

Q ss_pred             EEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC---------CCCCCH
Q ss_conf             99997468--7778177799999999857991799978989999998626975155799778520---------177830
Q gi|254780498|r   14 TISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVS---------IAMDER   82 (364)
Q Consensus        14 kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~v---------I~mde~   82 (364)
                      +||| .||  .--||+.+++..... +-....+++++|+.+.++...+......+...+-+.++.         +..+..
T Consensus         4 ~IaI-T~GDPaGIGpEIilKal~~~-~~~~~~~~vvigd~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~   81 (328)
T PRK03877          4 IIGI-TMGDAAGVGPEIIVKALADK-SVYEQCRPLVIGDAKRLERAGRIVGSELKVRAIQDPDEARFEFGTIDCIDLDLL   81 (328)
T ss_pred             EEEE-ECCCCCHHHHHHHHHHHHCC-HHHCCCCEEEEECHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCEEEECCCC
T ss_conf             7999-15885376999999999681-135059999997899999999982999714673897785235893158745546


Q ss_pred             HHHHHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCCC
Q ss_conf             6799971376--------42799999998549953999706-426788888------75322556763220011055889
Q gi|254780498|r   83 PADALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTVK  147 (364)
Q Consensus        83 P~~AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~~  147 (364)
                      +.. +.-++.        -.|+-.|++++++|++||+|.+= |-.++-..+      +.+|..+-+..++..+-+  +.+
T Consensus        82 ~~~-~~~G~~~~~~g~~~~~sl~~A~~~~~~g~~~alVT~PInK~~i~~ag~~f~GHTE~La~~~~~~~~~Mml~--~~~  158 (328)
T PRK03877         82 PAD-LPFGKVSAVAGDAAFRYIERAVELAKAGKIDAICTAPLNKEALHAGGHMFPGHTEILAHLTGTEEVSMMLV--SPK  158 (328)
T ss_pred             CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEE--CCC
T ss_conf             677-78898798899999999999999997498687996780678898579998981999998864787257785--598


Q ss_pred             CCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCC-HH---HHHHHHHHH
Q ss_conf             845998-------613277789899999999999999985689996589984----045555565-79---999999974
Q gi|254780498|r  148 GKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGN-DV---LQESARLLR  212 (364)
Q Consensus       148 g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~-~~---~kea~~LL~  212 (364)
                      =+++++       |+-..+  +.+.+.+.-.+-..+.|. +++++||++++-    -|+.-.-|+ |.   +.-|-+-|+
T Consensus       159 LrV~l~TtHipLk~V~~~I--t~~~I~~~i~l~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~~EE~~iI~PaI~~l~  235 (328)
T PRK03877        159 LKVIHVTTHVGLIDAIDKI--EPERVYRVIELAHETLVR-AGIKNPRIAVCGINPHAGENGLFGYGEEEEKIVPAIEAAQ  235 (328)
T ss_pred             CEEEEEEECCCHHHHHHHC--CHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             6899850057479999853--999999999999999998-0999971899852798765566586267877999999999


Q ss_pred             HCCCCCCCEECCCCHHHCC----CCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0245713200234554532----45683899755-127889999888899999999986322208899999989999999
Q gi|254780498|r  213 GECCGAFKYKGFIEANDIA----KGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREV  287 (364)
Q Consensus       213 ~~~~~~~nF~GniEg~~i~----~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~  287 (364)
                      +.   .++..|..-++-+|    .+..|++||== =.|=|.+|+..         +                        
T Consensus       236 ~~---gi~i~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~l~---------f------------------------  279 (328)
T PRK03877        236 AE---GIDVEGPLPADTLFFRAGRGDFDLVVAMYHDQGHGPVKVLG---------L------------------------  279 (328)
T ss_pred             HC---CCEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHCC---------C------------------------
T ss_conf             78---97088573818898876447899999955355316564224---------7------------------------


Q ss_pred             HHHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             972696870874674216148----------983889986899999999999996
Q gi|254780498|r  288 KEGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMSQ  332 (364)
Q Consensus       288 ~~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~~  332 (364)
                             ..|=-+-|||.=+-          |-+.|-+|+.++.+||+.|.++..
T Consensus       280 -------~~~vn~TlGLp~irtSpdHGta~diaGk~~A~~~s~~~Ai~~A~~~a~  327 (328)
T PRK03877        280 -------EAGVNITVGLPVIRTSVDHGTAFDIAGKGIADERSMLEALRQAAELAP  327 (328)
T ss_pred             -------CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             -------874799569991377899870566607898986999999999998726


No 30 
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=98.33  E-value=0.00032  Score=46.52  Aligned_cols=272  Identities=17%  Similarity=0.162  Sum_probs=148.9

Q ss_pred             EEEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCC-------CCCCEEEECCCC--CCCCCC
Q ss_conf             399997468--777817779999999985799179997898999999862697-------515579977852--017783
Q gi|254780498|r   13 DTISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPL-------LKERSCFHHCEV--SIAMDE   81 (364)
Q Consensus        13 ~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~-------~~~ri~Ii~a~~--vI~mde   81 (364)
                      .+||| .||  .--||+.+++.... .+-.....++++|+.+.++....+...       ..+.+.+++.+.  .+....
T Consensus         2 P~IaI-T~GDPaGIGpEIilKal~~-~~~~~~~~~vvig~~~~l~~~~~~l~~~~~~~~~~~~~i~v~~~~~~~~~~~G~   79 (332)
T PRK02746          2 PRLAI-TLGDPAGIGPEVILKALAS-PELPKNIQPTLVGCRQLLEATYQQLKSLGIEPLADPANLDILDLPLDSEITPGK   79 (332)
T ss_pred             CEEEE-CCCCCCHHHHHHHHHHHHC-HHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf             98999-0588536689999999857-100069899999799999999998444886565881106165057777778898


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHH------HHHHCCCCCCCCCCCHHHCC--CCCCCC--E
Q ss_conf             0679997137642799999998549953999706-42678888------87532255676322001105--588984--5
Q gi|254780498|r   82 RPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAM------ARLCLSRISGVDRPSLAAFW--PTVKGK--C  150 (364)
Q Consensus        82 ~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~------a~~~lg~i~Gv~RPala~~~--Pt~~g~--~  150 (364)
                      .-..+=+.-  -.|+..|++++++|++||+|.+= |-.++-.+      =+-+|..+-|..++..+-.-  |-.+.+  +
T Consensus        80 ~~~~~g~~~--~~~l~~Av~~~~~g~~~alVT~PInK~~i~~ag~~F~GHTE~La~~~~~~~~~Mml~~~s~~~~~~LrV  157 (332)
T PRK02746         80 GSAASGAAS--FAYLTTAIEITLEGEFRALVTAPIAKSAWHAAGHHYPGQTEVLAELAGVERFGMLFTARSPHTGWRLNT  157 (332)
T ss_pred             CCHHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCEEE
T ss_conf             698999999--999999999997599777875785689997467887768999999858997259987436666761479


Q ss_pred             EEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCH---HHHHHHHHHHHCCC
Q ss_conf             998-------613277789899999999999999985689996589984----0455555657---99999999740245
Q gi|254780498|r  151 IIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGND---VLQESARLLRGECC  216 (364)
Q Consensus       151 vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~---~~kea~~LL~~~~~  216 (364)
                      +++       |+-.++  +.+.+.+-..+-..+.|.  ++++||++.+-    -|+.-.=|+|   .+.-|-+-|++.. 
T Consensus       158 ~l~TtHipLk~V~~~I--t~~~I~~~i~~~~~~lk~--gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~l~~~~-  232 (332)
T PRK02746        158 LLATTHIPLSQVPKTL--TPELITSKLDLLLDFCRK--FIDKPRIAIAGLNPHAGEQGQLGSEEKDWLIPWLESWRQKN-  232 (332)
T ss_pred             EEEECCCCHHHHHHHH--CHHHHHHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
T ss_conf             8750565799999875--999999999999999982--88788748996488876567677321011399999999757-


Q ss_pred             CCCCEECCCCHHHCCC------------CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             7132002345545324------------5683899755-12788999988889999999998632220889999998999
Q gi|254780498|r  217 GAFKYKGFIEANDIAK------------GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKS  283 (364)
Q Consensus       217 ~~~nF~GniEg~~i~~------------g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~  283 (364)
                      .+++..|.+-++-+|.            +..|+|||== =.|=+.+|+..                              
T Consensus       233 ~gi~i~GP~paDt~F~~a~~~ff~~~~~~~~D~vlaMYHDQglip~K~l~------------------------------  282 (332)
T PRK02746        233 PDIQLLGPIPPDTCWLSAAQAWYGKGVAEAPDGYLALYHDQGLIPVKLLA------------------------------  282 (332)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHEECC------------------------------
T ss_conf             99858627681366555544220512135689899844354552230135------------------------------


Q ss_pred             HHHHHHHCCHHHCCCEEEEEEC--------CEE--EEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             9999972696870874674216--------148--9838899868999999999999960
Q gi|254780498|r  284 LREVKEGFDPRNFNGGVLLGVD--------GLV--VKGHGSSDAKSIFNVLGIAHNMSQN  333 (364)
Q Consensus       284 l~~~~~~~d~~~~gGa~llGl~--------g~v--ik~HG~s~~~a~~~ai~~a~~~~~~  333 (364)
                               . ..+=-+-|||.        |+.  |-+-|.+|+.++.+||+.|.++.+.
T Consensus       283 ---------f-~~~Vn~TlGLp~iRtS~dHGTA~diagk~~A~~~S~~~Ai~~A~~la~~  332 (332)
T PRK02746        283 ---------F-DYAVNTTIGLPFIRTSPDHGTAFDIAGKGIARPQSMKAAIKLAWELSQQ  332 (332)
T ss_pred             ---------C-CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             ---------6-7637994599912678998706666078989969999999999998529


No 31 
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=98.26  E-value=0.00011  Score=49.45  Aligned_cols=267  Identities=16%  Similarity=0.189  Sum_probs=149.8

Q ss_pred             EEEEECCC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCC-------CCCCCCCHHH
Q ss_conf             99997468--77781777999999998579917999789899999986269751557997785-------2017783067
Q gi|254780498|r   14 TISLDLMG--GDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCE-------VSIAMDERPA   84 (364)
Q Consensus        14 kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~-------~vI~mde~P~   84 (364)
                      +||| .||  .--||+.+++....  .+.....++++|+...++......-...-.++.++..       ..+..-+.|.
T Consensus         4 ~IaI-T~GDPaGIGpEIilKal~~--~~~~~~~~ivig~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~i~d~~~   80 (326)
T PRK03371          4 TVAI-TMGDPAGIGPEIIVKALSE--DGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEPL   80 (326)
T ss_pred             EEEE-ECCCCCHHHHHHHHHHHHC--CCCCCCCEEEEECHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCEEEEEECCC
T ss_conf             6999-4578526399999999857--440389989997899999999847998820464598767125898678983677


Q ss_pred             H---HHHHCCC--------CHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCC
Q ss_conf             9---9971376--------42799999998549953999706-426788888------7532255676322001105588
Q gi|254780498|r   85 D---ALRRGRN--------VSSMWRAIEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTV  146 (364)
Q Consensus        85 ~---AlR~kK~--------~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~  146 (364)
                      .   .++-++.        -.|+..|++++++|++||+|.+= |-.++-.++      +-+|..+-+...+ .|.++ +.
T Consensus        81 ~~~~~~~~G~~~~~~g~~a~~sl~~Av~~~~~g~~~alVT~PInK~~i~~aG~~f~GHTE~La~~~~~~~~-~Mml~-~~  158 (326)
T PRK03371         81 AQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDY-AMVLY-TD  158 (326)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCH-HHHHH-CC
T ss_conf             77455778982889999999999999999974985779967857788986799999869999887447863-77731-68


Q ss_pred             CCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCH---HHHHHHHHHH
Q ss_conf             9845998-------613277789899999999999999985689996589984----0455555657---9999999974
Q gi|254780498|r  147 KGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGND---VLQESARLLR  212 (364)
Q Consensus       147 ~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~---~~kea~~LL~  212 (364)
                      +=+++++       |+-..+  +.+.+.+.-.+-..+.|. +++++||++++-    -|+.-.-|+|   .+.-|-+-|+
T Consensus       159 ~LrV~lvTtHipLk~V~~~I--t~~~I~~~i~l~~~~lk~-~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PaI~~l~  235 (326)
T PRK03371        159 KLKVIHVSTHIALRKFLDTL--STARVETVIGIADTFLKR-VGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDAR  235 (326)
T ss_pred             CCEEEEECCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             74799836887699999998--499999999999999998-289887079995189876667775105562599999999


Q ss_pred             HCCCCCCCEECCCCHHHCC----CCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0245713200234554532----456838997551-27889999888899999999986322208899999989999999
Q gi|254780498|r  213 GECCGAFKYKGFIEANDIA----KGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREV  287 (364)
Q Consensus       213 ~~~~~~~nF~GniEg~~i~----~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~  287 (364)
                      +.   .++..|..-++-+|    .++.|+|||==- .|=|.+|+..                                  
T Consensus       236 ~~---gi~v~GP~paDt~F~~~~~~~~D~vlaMYHDQglip~K~~~----------------------------------  278 (326)
T PRK03371        236 AK---GMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLG----------------------------------  278 (326)
T ss_pred             HC---CCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHCC----------------------------------
T ss_conf             78---98798998818898874356899999805245316564225----------------------------------


Q ss_pred             HHHCCHHHCCCEEEEEECCEE----------EEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             972696870874674216148----------98388998689999999999999
Q gi|254780498|r  288 KEGFDPRNFNGGVLLGVDGLV----------VKGHGSSDAKSIFNVLGIAHNMS  331 (364)
Q Consensus       288 ~~~~d~~~~gGa~llGl~g~v----------ik~HG~s~~~a~~~ai~~a~~~~  331 (364)
                           . ..|=-+-|||.=+-          |-+-|.++..++.+||+.|.++.
T Consensus       279 -----f-~~~Vn~TlGLp~iRtSpdHGTa~diagkg~A~~~s~~~Ai~~A~~~a  326 (326)
T PRK03371        279 -----F-YDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA  326 (326)
T ss_pred             -----C-CCCEEEECCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf             -----7-87379946999147789987056661789899699999999999859


No 32 
>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalysed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Probab=98.22  E-value=0.0002  Score=47.81  Aligned_cols=238  Identities=18%  Similarity=0.153  Sum_probs=137.6

Q ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCC----------CCCCCHHHHHHHHCCC--------CHHHHHHHHH
Q ss_conf             991799978989999998626975155799778520----------1778306799971376--------4279999999
Q gi|254780498|r   41 PRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVS----------IAMDERPADALRRGRN--------VSSMWRAIEA  102 (364)
Q Consensus        41 ~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~v----------I~mde~P~~AlR~kK~--------~SSm~~a~~l  102 (364)
                      .....+++||.+.++...+..+... .++.++..+.          +...+-+. .+.-++.        -.|+-.|+++
T Consensus         7 ~~C~PVViGd~~lL~~~ak~lgl~~-~i~~I~~~~~~~~~~~~i~~v~~~~~~~-~~~~Gk~s~~~G~~~~~~l~~Av~~   84 (299)
T pfam04166         7 EKCTPVVIADEALLERAAKLLGLPL-DLRDIEFVEPAQEEPAGLLVIDPLPLKV-PVVAGEVSAASGAYVLETLARAVAL   84 (299)
T ss_pred             CCCCEEEEECHHHHHHHHHHCCCCC-EEEEECCHHHCCCCCCCEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             2897999989999999999829995-3898087554422568768970565677-7788985889999999999999999


Q ss_pred             HHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCCCCC-EEEE-------ECCCCCCCCHHHHH
Q ss_conf             8549953999706-426788888------7532255676322001105588984-5998-------61327778989999
Q gi|254780498|r  103 VKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTVKGK-CIIL-------DVGATIGSTVSHMV  167 (364)
Q Consensus       103 vk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~~g~-~vll-------D~GAN~d~~~~~L~  167 (364)
                      +++|++||+|.+= |-.++-.++      +-+|...-+...|..+-+  + +.. ++++       |+-.+  .+.+.+.
T Consensus        85 ~~~g~~dalVT~PInK~~i~~ag~~f~GHTE~La~~~~~~~~~Mml~--~-~~LrV~lvTtHipLk~V~~~--It~~~I~  159 (299)
T pfam04166        85 ALDGEFDAIVTGPINKGALKDAGIPYSGHTEFLAERTGTHSVVMMLA--T-GDLRVALVTTHIPLKDVPDA--ITFELVE  159 (299)
T ss_pred             HHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEE--C-CCCEEEEECCCCCHHHHHHH--HHHHHHH
T ss_conf             97599889997973889998679998986899987636897379996--4-97489995346569999987--5199999


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCCCCHH---HHHHHHHHHHCCCCCCCEECCCCHHHCCC----CCCC
Q ss_conf             9999999999985689996589984----04555556579---99999997402457132002345545324----5683
Q gi|254780498|r  168 QLSILGSFFARSVAGINCPSIGLLN----VGTEEIKGNDV---LQESARLLRGECCGAFKYKGFIEANDIAK----GFVD  236 (364)
Q Consensus       168 qfA~mGs~yak~~~~~~~PrVgLLN----iG~E~~KG~~~---~kea~~LL~~~~~~~~nF~GniEg~~i~~----g~~D  236 (364)
                      +.-..-....+..+++++||++.+-    -|+.-.-|+|.   +.-|-+.|++   ..++..|..-++-+|.    +..|
T Consensus       160 ~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGE~G~~G~EE~~iI~Pai~~~~~---~gi~v~GP~paDt~F~~~~~~~~D  236 (299)
T pfam04166       160 DFLRLLHKALREKFGIAEPRIAVAGLNPHAGEGGVLGREEIEEIIPALEQARA---EGIDLLGPLPADTAFRPVLLGRYD  236 (299)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             99999999999964998980899944887665555641447888999999885---499758897943776541105789


Q ss_pred             EEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEE-------
Q ss_conf             899755-127889999888899999999986322208899999989999999972696870874674216148-------
Q gi|254780498|r  237 VIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLV-------  308 (364)
Q Consensus       237 VvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~v-------  308 (364)
                      +|||== =.|=+.+|+..-                                        ..|=-+-+||.=+-       
T Consensus       237 ~v~amYHDQglip~K~~~f----------------------------------------~~~vn~t~GLp~irtS~dHGt  276 (299)
T pfam04166       237 AVLAMYHDQGLIPLKYLGF----------------------------------------DRGVNVTLGLPIIRTSVDHGT  276 (299)
T ss_pred             EEEEECCCCCCHHHHHCCC----------------------------------------CCCEEEECCCCEEEECCCCCC
T ss_conf             9998052442076653356----------------------------------------873799448992377899870


Q ss_pred             ---EEECCCCCHHHHHHHHHHHH
Q ss_conf             ---98388998689999999999
Q gi|254780498|r  309 ---VKGHGSSDAKSIFNVLGIAH  328 (364)
Q Consensus       309 ---ik~HG~s~~~a~~~ai~~a~  328 (364)
                         |-+-|-+++.++.+||++|.
T Consensus       277 a~diagk~~A~~~s~~~Ai~~Aa  299 (299)
T pfam04166       277 AFDIAGKGKADPGSLIAALKLAA  299 (299)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             56660789899699999999759


No 33 
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=98.16  E-value=5.9e-06  Score=57.46  Aligned_cols=185  Identities=20%  Similarity=0.350  Sum_probs=125.0

Q ss_pred             HHHHHHCCCCEEEEEECCHHHHHHHHHH-HCCCCCCCCCCCHHHCCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999854995399970642678888875-322556763220011055889-84599861327778989999999999999
Q gi|254780498|r   99 AIEAVKKNQAASVVTAGNTGALIAMARL-CLSRISGVDRPSLAAFWPTVK-GKCIILDVGATIGSTVSHMVQLSILGSFF  176 (364)
Q Consensus        99 a~~lvk~g~aDa~VSaGnTGA~la~a~~-~lg~i~Gv~RPala~~~Pt~~-g~~vllD~GAN~d~~~~~L~qfA~mGs~y  176 (364)
                      =++.+.+|++||.|-    |++-++... .|+.--|+.+-|=++++-+.. ++++|.-+|..-.-+-+..+..+..++-|
T Consensus        55 lve~Lv~g~~daaVR----Gslsas~v~~eLkealgm~~~~Ras~le~~~~~~flLaPVGIDEg~ti~dk~ri~~laaef  130 (256)
T COG4002          55 LVEKLVDGEIDAAVR----GSLSASKVILELKEALGMKFYCRASILENPFTNGFLLAPVGIDEGKTIKDKIRIIELAAEF  130 (256)
T ss_pred             HHHHHHCCCHHHHHH----CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999997450367774----4543225899999853887313210124588673487431148884177778999999999


Q ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCHH-HHHH---HHHHHHCCCCCCCEECC-CCH--------HHCCCCCCCEEEECCH
Q ss_conf             998568999658998404555556579-9999---99974024571320023-455--------4532456838997551
Q gi|254780498|r  177 ARSVAGINCPSIGLLNVGTEEIKGNDV-LQES---ARLLRGECCGAFKYKGF-IEA--------NDIAKGFVDVIVTEGF  243 (364)
Q Consensus       177 ak~~~~~~~PrVgLLNiG~E~~KG~~~-~kea---~~LL~~~~~~~~nF~Gn-iEg--------~~i~~g~~DVvV~DGF  243 (364)
                      .|. ++++ |+||.||=|--..-|+.- +.++   -+++.+      .|.|+ ++-        .-+-+| -=|+-.||-
T Consensus       131 lrr-~~~e-p~VaVlSgGRlgDlGR~~~VDrtladgEfva~------~~k~~g~~v~H~~ILIEealkdg-nvIia~dGI  201 (256)
T COG4002         131 LRR-TGIE-PKVAVLSGGRLGDLGRNKEVDRTLADGEFVAE------HFKGNGVDVIHYGILIEEALKDG-NVIIAVDGI  201 (256)
T ss_pred             HHH-HCCC-CCEEEECCCCCHHCCCCCHHHHHHHCHHHHHH------HHHCCCCEEEEEEEEHHHHHHCC-CEEEEECCC
T ss_conf             997-0989-61699507730002576212024323299999------87416822689666778786148-889975675


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHH
Q ss_conf             27889999888899999999986322208899999989999999972696870874674216148983889986899999
Q gi|254780498|r  244 SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNV  323 (364)
Q Consensus       244 tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~a  323 (364)
                      |||....+.                       + +         --  -.+-||..+.|+-+.+-|-+..+..+..+++|
T Consensus       202 tGNLiFR~l-----------------------~-l---------vg--g~~g~GAp~al~~d~vFVDTSR~q~a~~yarA  246 (256)
T COG4002         202 TGNLIFRCL-----------------------G-L---------VG--GIRGYGAPIALDKDVVFVDTSRNQNAEGYARA  246 (256)
T ss_pred             CCHHHHHHH-----------------------H-H---------HC--CCCCCCCCEEECCCCEEEECHHHHHHHHHHHH
T ss_conf             430455567-----------------------7-7---------53--66777883474488189866045548999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780498|r  324 LGIAHNMS  331 (364)
Q Consensus       324 i~~a~~~~  331 (364)
                      ++.+....
T Consensus       247 lkfl~~~a  254 (256)
T COG4002         247 LKFLHGLA  254 (256)
T ss_pred             HHHHHHHH
T ss_conf             99987541


No 34 
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=97.91  E-value=0.0013  Score=42.61  Aligned_cols=282  Identities=19%  Similarity=0.222  Sum_probs=155.7

Q ss_pred             EEEEEEECCCCCC--CCHHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHCCCCCCCEEEECCC-CCC-----CCC--
Q ss_conf             2399997468777--817779999999985799-17999789899999986269751557997785-201-----778--
Q gi|254780498|r   12 VDTISLDLMGGDL--GARDLILGASKFLEAHPR-IRFLMYGDAKVCLPILDSHPLLKERSCFHHCE-VSI-----AMD--   80 (364)
Q Consensus        12 m~kIAVDaMGGD~--~P~~vi~Ga~~al~~~~~-i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~-~vI-----~md--   80 (364)
                      +.+||| .||-=.  ||+.    +.+++.+.+. .+++++||+..++.-.+..........+++.+ +..     ..-  
T Consensus         3 ~~~iAi-t~GDPaGIGPEi----~~~~~~~~~~~~~~v~igd~~lL~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l   77 (332)
T COG1995           3 KPRIAI-TMGDPAGIGPEL----VALALAELPIKCELVVIGDKALLEAAAALLGLPVFLLEAIPDPYEAFAAGAIDLPDL   77 (332)
T ss_pred             CCCEEE-CCCCCCCCCHHH----HHHHHCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCCCCEEEC
T ss_conf             885686-468866679999----998621046778769985899999999874665311001466044542147622422


Q ss_pred             CHHH-HHHHHCCCC--------HHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHH------CCCCCCCCCCCHHHCCC
Q ss_conf             3067-999713764--------2799999998549953999706-426788888753------22556763220011055
Q gi|254780498|r   81 ERPA-DALRRGRNV--------SSMWRAIEAVKKNQAASVVTAG-NTGALIAMARLC------LSRISGVDRPSLAAFWP  144 (364)
Q Consensus        81 e~P~-~AlR~kK~~--------SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a~~~------lg~i~Gv~RPala~~~P  144 (364)
                      +.+. ..++..+..        -++-.|+++...|++||+|.+= |-.++-.++...      |.-.-+..+|..|-.-|
T Consensus        78 ~~~~~~~v~~G~~~~~~g~~~~~~l~~A~~~a~~G~~~aivT~PI~K~~l~~AG~~y~GhTe~LA~~s~~~~~vMmla~~  157 (332)
T COG1995          78 PLPLPAPVEAGQLSAANGAYVFETLKRAVELALAGEVDAIVTAPINKEALNDAGIPYPGHTEFLAELSGTHDPVMMLAVP  157 (332)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECC
T ss_conf             45776765688757134089999999999987367346799656478999964899897789999985799717986146


Q ss_pred             CCCCCEE-------EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCCHH---HHHHHHH
Q ss_conf             8898459-------9861327778989999999999999998568999658998--4--04555556579---9999999
Q gi|254780498|r  145 TVKGKCI-------ILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGNDV---LQESARL  210 (364)
Q Consensus       145 t~~g~~v-------llD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~~~---~kea~~L  210 (364)
                      ..  .+.       |-|+-.  --+++.+.++......--+.-+|+++||++..  |  -|+.-.-|+|.   +.-+-+.
T Consensus       158 ~L--rv~lvTtHipL~~V~~--~iT~e~l~~~~~i~~~~L~~~fGi~~PriaVaGLNPHaGE~G~lG~EE~diI~Paie~  233 (332)
T COG1995         158 EL--RVALVTTHIPLKDVPD--AITPELLLEVLRILDKDLRKKFGIAEPRIAVAGLNPHAGEGGLLGREEIDIIIPAIEE  233 (332)
T ss_pred             CC--EEEEEEECCCHHHHHH--HHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             41--7998750461888776--6589999999999999999862988763688614898876777773477888999999


Q ss_pred             HHHCCCCCCCEECCCCHHHCCCCC----CCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             740245713200234554532456----83899755-1278899998888999999999863222088999999899999
Q gi|254780498|r  211 LRGECCGAFKYKGFIEANDIAKGF----VDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLR  285 (364)
Q Consensus       211 L~~~~~~~~nF~GniEg~~i~~g~----~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~  285 (364)
                      +|+.   .|+++|.+-++-+|...    .|.|||== =.|=|.||..         -+-+..+-+    +|.-+++-+  
T Consensus       234 aR~~---Gi~~~GPlpADT~F~~~~~~~~DavlaMYHDQgliplK~l---------~Fd~~VNvt----lGLPfiRTS--  295 (332)
T COG1995         234 ARAE---GIDLVGPLPADTLFHPAYLANYDAVLAMYHDQGLIPLKYL---------GFDRGVNVT----LGLPFIRTS--  295 (332)
T ss_pred             HHHH---CCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHH---------CCCCCEEEE----CCCCEEEEC--
T ss_conf             9981---8733489994144203455057879996226643556442---------235325773----388703406--


Q ss_pred             HHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf             99972696870874674216148983889986899999999999996070
Q gi|254780498|r  286 EVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGF  335 (364)
Q Consensus       286 ~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~~~  335 (364)
                             + .+|-|.       =|-+.|.++..++..||++|.+++.+..
T Consensus       296 -------~-DHGTAf-------DiAgkGiA~~~S~~~Ai~lA~~l~~~~~  330 (332)
T COG1995         296 -------V-DHGTAF-------DIAGKGIADPGSLIAAIKLAAKLAAKRA  330 (332)
T ss_pred             -------C-CCCCHH-------HHHCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             -------8-762054-------3304785780689999999999986340


No 35 
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=97.64  E-value=0.0042  Score=39.44  Aligned_cols=246  Identities=16%  Similarity=0.115  Sum_probs=134.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCC-CCCEEEECCCCC--CCCCC-HHHHHHHHCCCCHHHHHH
Q ss_conf             78177799999999857991799978989999998626975-155799778520--17783-067999713764279999
Q gi|254780498|r   24 LGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLL-KERSCFHHCEVS--IAMDE-RPADALRRGRNVSSMWRA   99 (364)
Q Consensus        24 ~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~-~~ri~Ii~a~~v--I~mde-~P~~AlR~kK~~SSm~~a   99 (364)
                      -||+.++++.. .+.+  ....+++|+.+.+.......... .+.+.+.+....  +.... ++..+ +.-  -.|+-.|
T Consensus        14 IGPEIilKa~~-~~~~--~~~pii~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~g-~~~--~~~l~~A   87 (304)
T PRK03946         14 IGLEIALKSHE-EVSK--ICEPLYFIDEELLNQASQLLNLKIPNDFEIDEPGLLFEIKPGKVSAKSG-AYS--FESFKKA   87 (304)
T ss_pred             HHHHHHHHHHH-HHHH--HCCEEEEECHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHHH-HHH--HHHHHHH
T ss_conf             39999999828-7686--2991999889999999998499996442132566445688998288999-999--9999999


Q ss_pred             HHHHHCCCCEEEEEEC-CHHHHHHHH------HHHCCCCCCCCCCCHHHCCCCCCCCEEEE-------ECCCCCCCCHHH
Q ss_conf             9998549953999706-426788888------75322556763220011055889845998-------613277789899
Q gi|254780498|r  100 IEAVKKNQAASVVTAG-NTGALIAMA------RLCLSRISGVDRPSLAAFWPTVKGKCIIL-------DVGATIGSTVSH  165 (364)
Q Consensus       100 ~~lvk~g~aDa~VSaG-nTGA~la~a------~~~lg~i~Gv~RPala~~~Pt~~g~~vll-------D~GAN~d~~~~~  165 (364)
                      ++++++|++||+|.+= |-.++-.++      +-+|...-+ .. .+|.++ +.+=.++++       |+-.++  +.+.
T Consensus        88 i~~~~~g~~~aiVT~PInK~~i~~aG~~f~GHTE~La~~~~-~~-~~Mml~-~~~L~v~~~TtHipLk~V~~~i--t~~~  162 (304)
T PRK03946         88 VELADSKEVDAICTLPIHKKAWQKAGIPYVGHTDALRDRFK-KN-AIMMLG-CEKLFVALFTDHIPLKKVSQLI--TVKA  162 (304)
T ss_pred             HHHHHCCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHH-CC-CEEEEC-CCCEEEEEECCCCCHHHHHHHH--CHHH
T ss_conf             99998399879996754699998589998981699999860-24-323111-6863899856887599999986--8999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEE--E--------CCCCCCCCCHHHHHHHHHHHHCCCCCCC-EECCCCHHHCCC--
Q ss_conf             99999999999998568999658998--4--------0455555657999999997402457132-002345545324--
Q gi|254780498|r  166 MVQLSILGSFFARSVAGINCPSIGLL--N--------VGTEEIKGNDVLQESARLLRGECCGAFK-YKGFIEANDIAK--  232 (364)
Q Consensus       166 L~qfA~mGs~yak~~~~~~~PrVgLL--N--------iG~E~~KG~~~~kea~~LL~~~~~~~~n-F~GniEg~~i~~--  232 (364)
                      +.++-..   +.+.   +.+||||++  |        +|.||.   +++.-.-++++..   .++ |.|.+-++-+|.  
T Consensus       163 i~~~i~~---~~~~---~~~prIaV~GLNPHAGE~G~~G~EE~---~Ii~~i~~~~~~~---~~~~~~GP~paDt~F~~~  230 (304)
T PRK03946        163 LVKFLLD---FYKS---TQFKKVGVLGFNPHAGDEGVLGEEEK---IILKAIKKANQFL---GFEIFFGPLVPDSAFTPN  230 (304)
T ss_pred             HHHHHHH---HHHH---CCCCCEEEEEECCCCCCCCCCCCCHH---HHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHH
T ss_conf             9999999---9853---57884599941776300056774134---7699999999966---987133898826888875


Q ss_pred             --CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEE-
Q ss_conf             --5683899755-127889999888899999999986322208899999989999999972696870874674216148-
Q gi|254780498|r  233 --GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLV-  308 (364)
Q Consensus       233 --g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~v-  308 (364)
                        ++.|++||== =.|=|.+|+.                                       +. ..+=-+-|||.=+. 
T Consensus       231 ~~~~~D~vvaMYHDQglip~K~l---------------------------------------~f-~~~vn~TlGLp~iRt  270 (304)
T PRK03946        231 KRKNFNRYVAMYHDQGLAPLKAL---------------------------------------YF-DESINVSLNLPILRT  270 (304)
T ss_pred             HHCCCCEEEEECCCCCCHHHHHC---------------------------------------CC-CCCEEEECCCCEEEE
T ss_conf             41579999981524432656522---------------------------------------47-872799528990367


Q ss_pred             ---------EEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ---------983889986899999999999996
Q gi|254780498|r  309 ---------VKGHGSSDAKSIFNVLGIAHNMSQ  332 (364)
Q Consensus       309 ---------ik~HG~s~~~a~~~ai~~a~~~~~  332 (364)
                               |-+-|-+|+.++.+||++|.++++
T Consensus       271 SpdHGTa~dIaGkg~A~~~s~~~Ai~~A~~la~  303 (304)
T PRK03946        271 SVDHGTAFDIAYKNKANTKSYLNAIKYAINLGS  303 (304)
T ss_pred             CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             899870566607898996999999999999841


No 36 
>TIGR02709 branched_ptb branched-chain phosphotransacylase; InterPro: IPR014081   This entry distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase 2.3.1.19 from EC, (IPR014079 from INTERPRO) and phosphate acetyltransferase 2.3.1.8 from EC, (IPR004614 from INTERPRO). Members of this family and of IPR014079 from INTERPRO show considerable cross reactivity, and the occurrence of a member of either family proximate to an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds..
Probab=95.91  E-value=0.047  Score=32.85  Aligned_cols=244  Identities=19%  Similarity=0.253  Sum_probs=147.5

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCH
Q ss_conf             997468777817779999999985-7991799978989999998626975155799778520177830679997137642
Q gi|254780498|r   16 SLDLMGGDLGARDLILGASKFLEA-HPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVS   94 (364)
Q Consensus        16 AVDaMGGD~~P~~vi~Ga~~al~~-~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~S   94 (364)
                      .|-.-||-. |+ ++.=...+|++ ..-+.|++|-..|.+..        ++.-..+||++.-                +
T Consensus         2 tvsiaGGsq-Pe-ilqlvkkalkeaeqPlqfivfdtnenldt--------enlWkyvhCsdea----------------a   55 (271)
T TIGR02709         2 TVSIAGGSQ-PE-ILQLVKKALKEAEQPLQFIVFDTNENLDT--------ENLWKYVHCSDEA----------------A   55 (271)
T ss_pred             EEEECCCCC-HH-HHHHHHHHHHHHCCCEEEEEEECCCCCCH--------HHHHEEEECCCHH----------------H
T ss_conf             676217886-47-99999998763128706899715555451--------2431001103045----------------6


Q ss_pred             HHHHHHHHHHCCCCEEEEEEC--CHHHHH---HHHHHHCCCCCCCCCCCHHHCCCCCCCCE-EEEECCCCCCCCHHHHHH
Q ss_conf             799999998549953999706--426788---88875322556763220011055889845-998613277789899999
Q gi|254780498|r   95 SMWRAIEAVKKNQAASVVTAG--NTGALI---AMARLCLSRISGVDRPSLAAFWPTVKGKC-IILDVGATIGSTVSHMVQ  168 (364)
Q Consensus        95 Sm~~a~~lvk~g~aDa~VSaG--nTGA~l---a~a~~~lg~i~Gv~RPala~~~Pt~~g~~-vllD~GAN~d~~~~~L~q  168 (364)
                      --..|+.+|..|+|+.++- |  .|-.++   .-+-+-|+--|=.+..|.   +--+.|++ ++-||.-|+-|+--.|.+
T Consensus        56 vaqeavslvatGqaqillk-GiiqthtllkemlksehqlknkPilshvam---velPaGktflltdCamniaPtqatlie  131 (271)
T TIGR02709        56 VAQEAVSLVATGQAQILLK-GIIQTHTLLKEMLKSEHQLKNKPILSHVAM---VELPAGKTFLLTDCAMNIAPTQATLIE  131 (271)
T ss_pred             HHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEE---EECCCCCEEEEHHHHHHCCCCHHHHHH
T ss_conf             7665555432231555667-688888999998643343305750110123---442788642000113212530367788


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCC-CCC--HHHHHHHHHHHHCCCCCCCEECCCC----------HHHC----C
Q ss_conf             999999999985689996589984045555-565--7999999997402457132002345----------5453----2
Q gi|254780498|r  169 LSILGSFFARSVAGINCPSIGLLNVGTEEI-KGN--DVLQESARLLRGECCGAFKYKGFIE----------ANDI----A  231 (364)
Q Consensus       169 fA~mGs~yak~~~~~~~PrVgLLNiG~E~~-KG~--~~~kea~~LL~~~~~~~~nF~GniE----------g~~i----~  231 (364)
                      +-.-....++. +|.-+||++||+--+.-+ |=+  -+.||...-..+...  -...|..-          ++.-    .
T Consensus       132 ivenakevaqk-lGlhhPkiallsaaenfnPkmPssvlakevtahfn~qqe--atvfGPlsldlatseeavahkrysGPi  208 (271)
T TIGR02709       132 IVENAKEVAQK-LGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQQE--ATVFGPLSLDLATSEEAVAHKRYSGPI  208 (271)
T ss_pred             HHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC--EEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             88767899987-167664144222234237777546777666754215553--056444000011003445320036873


Q ss_pred             CCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEE
Q ss_conf             456838997551-2788999988889999999998632220889999998999999997269687087467421614898
Q gi|254780498|r  232 KGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVK  310 (364)
Q Consensus       232 ~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik  310 (364)
                      -|++|++|.--. +||.+-|+.-                                    -|..... |+.+.|-+-+||-
T Consensus       209 mGdadilvvPtidvGnClykslt------------------------------------lfGhakv-GGtivGtkvPvvl  251 (271)
T TIGR02709       209 MGDADILVVPTIDVGNCLYKSLT------------------------------------LFGHAKV-GGTIVGTKVPVVL  251 (271)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHH------------------------------------HHCCCCC-CCEEECCCCCEEE
T ss_conf             14655688534101146776665------------------------------------5200000-6556402003788


Q ss_pred             ECCCCCHHHHHHHHHHHHH
Q ss_conf             3889986899999999999
Q gi|254780498|r  311 GHGSSDAKSIFNVLGIAHN  329 (364)
Q Consensus       311 ~HG~s~~~a~~~ai~~a~~  329 (364)
                      +-.+-+...-.+.+|.|.+
T Consensus       252 tsrsdsteskfhslrfamr  270 (271)
T TIGR02709       252 TSRSDSTESKFHSLRFAMR  270 (271)
T ss_pred             EECCCCCHHHHHHHHHHHC
T ss_conf             4056530123544443214


No 37 
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit; InterPro: IPR012721    Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT theta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=86.44  E-value=1.2  Score=23.99  Aligned_cols=128  Identities=24%  Similarity=0.317  Sum_probs=78.2

Q ss_pred             HHHHHHHHH----HC---CCCCCEEEEEECC----CCCCCCCHHHHHHHHHHHHCCCC--CCC-EECCCCHHHCCCCCCC
Q ss_conf             999999998----56---8999658998404----55555657999999997402457--132-0023455453245683
Q gi|254780498|r  171 ILGSFFARS----VA---GINCPSIGLLNVG----TEEIKGNDVLQESARLLRGECCG--AFK-YKGFIEANDIAKGFVD  236 (364)
Q Consensus       171 ~mGs~yak~----~~---~~~~PrVgLLNiG----~E~~KG~~~~kea~~LL~~~~~~--~~n-F~GniEg~~i~~g~~D  236 (364)
                      ++|-++.|.    +-   ..++|||+-+|=|    +=|+|||=+++.|-+||.=+++.  .++ +     =..|-+.-++
T Consensus       217 ~~GmV~~reaeG~vksls~~~~AKVAVf~CplD~~~TETKGTVLihnA~ELlny~KgEE~~~e~~-----iK~iad~Gv~  291 (554)
T TIGR02346       217 LKGMVFKREAEGSVKSLSRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAL-----IKAIADSGVK  291 (554)
T ss_pred             EECCEECCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHCCHHHHCCCCCCHHHHHHHH-----HHHHHHCCCE
T ss_conf             85117631788433530213688678871777745665243000124786605570268999998-----7899868985


Q ss_pred             EEEECCHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEE-----EEE
Q ss_conf             899755127889999888--------8999999999863222088999999899999999726968708746-----742
Q gi|254780498|r  237 VIVTEGFSGNIAIKAAEG--------AVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGV-----LLG  303 (364)
Q Consensus       237 VvV~DGFtGNi~LKt~EG--------~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~-----llG  303 (364)
                      |||+-|=+|.++|--+|=        .+||=.+-|=+.+..+++-||+..             .|++-|=-=     =.|
T Consensus       292 VIv~gG~v~d~AlHy~~~Y~im~~k~~SKFELrRlCk~~gA~~l~rL~~P-------------~PEe~G~vds~~v~EIG  358 (554)
T TIGR02346       292 VIVTGGSVGDMALHYVEKYNIMVLKIPSKFELRRLCKTVGATPLARLGAP-------------QPEELGYVDSVYVSEIG  358 (554)
T ss_pred             EEEECCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCC-------------CHHHCCCEEEEEEEEEC
T ss_conf             99946848899998781558269997782658899988077773518345-------------82264420079999985


Q ss_pred             ECCEEEEECCCCC
Q ss_conf             1614898388998
Q gi|254780498|r  304 VDGLVVKGHGSSD  316 (364)
Q Consensus       304 l~g~vik~HG~s~  316 (364)
                      -.++.|.-|=..|
T Consensus       359 ~~~VTvf~~e~~d  371 (554)
T TIGR02346       359 GQKVTVFKQENGD  371 (554)
T ss_pred             CCEEEEEEEECCC
T ss_conf             8488999730377


No 38 
>pfam10941 DUF2620 Protein of unknown function DUF2620. This is a bacterial family of proteins with unknown function.
Probab=84.18  E-value=0.96  Score=24.57  Aligned_cols=72  Identities=26%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             EEEEEC--CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHH--
Q ss_conf             799978--9899999986269751557997785201778306799971376427999999985499539997064267--
Q gi|254780498|r   44 RFLMYG--DAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGA--  119 (364)
Q Consensus        44 ~iiLvG--dee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA--  119 (364)
                      +|.+-|  +++++++.+.+...  +.+++.     |.                |=..|.+.||.|++|=.+-|.|||+  
T Consensus         2 kivIgGql~K~~i~~~i~~~~~--~~~ev~-----i~----------------sDmdAAM~vK~G~aDYYiGACnTGgGg   58 (117)
T pfam10941         2 RIVIGGQLQKEEIAELIEETAG--GAVEVT-----IK----------------SDLDAAMAVKNGKADYYIGACNTGAGG   58 (117)
T ss_pred             EEEECCCCCHHHHHHHHHHHCC--CCEEEE-----EC----------------CHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf             1888472259999999998689--836999-----70----------------509999887669967666644789619


Q ss_pred             HHHHHHHHCCCC--CCCCCCC
Q ss_conf             888887532255--6763220
Q gi|254780498|r  120 LIAMARLCLSRI--SGVDRPS  138 (364)
Q Consensus       120 ~la~a~~~lg~i--~Gv~RPa  138 (364)
                      .++.+.-+||.-  --|.+|.
T Consensus        59 ALamAIallG~~~C~Tvs~pg   79 (117)
T pfam10941        59 ALAMAIAILGKDKCATIAMPG   79 (117)
T ss_pred             HHHHHHHHHCCCCEEEEECCC
T ss_conf             999999994846357855699


No 39 
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=81.67  E-value=4.1  Score=20.58  Aligned_cols=139  Identities=19%  Similarity=0.227  Sum_probs=80.9

Q ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999998549953999706426788888753225567632200110558898459986132777898999999999999
Q gi|254780498|r   96 MWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSF  175 (364)
Q Consensus        96 m~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~  175 (364)
                      +-.|-+++++ .+|.++|.|.|+.++.-..         +-|-+                  .+.++..++++-=    .
T Consensus        22 v~~a~~~~~~-g~dvIIsRGgta~~ir~~~---------~iPVv------------------~I~~s~~Dil~al----~   69 (169)
T pfam06506        22 VEVARALVAE-GVDVIISRGGTAAYLRDRL---------SVPVV------------------EIKVSGFDLLRAL----A   69 (169)
T ss_pred             HHHHHHHHHC-CCCEEEECCHHHHHHHHHC---------CCCEE------------------EEECCHHHHHHHH----H
T ss_conf             9999999977-9959998965899999858---------99889------------------9827886999999----9


Q ss_pred             HHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCC-------CCCCCEEEECCHHHHHH
Q ss_conf             99985689996589984045555565799999999740245713200234554532-------45683899755127889
Q gi|254780498|r  176 FARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIA-------KGFVDVIVTEGFSGNIA  248 (364)
Q Consensus       176 yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~-------~g~~DVvV~DGFtGNi~  248 (364)
                      .++.    .++|||+.+.+.- .+   -.+.--++|.-    ++.+.-+....|+.       ..-+||||+|+.+-+.+
T Consensus        70 ~a~~----~~~kiavvg~~~~-~~---~~~~~~~il~~----~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A  137 (169)
T pfam06506        70 RARR----YGGRIGLVGYENI-IP---GLKALSELLGL----DIVQRAYQSEEEARAAVKELKAQGIKVIVGDGLVCDLA  137 (169)
T ss_pred             HHHH----HCCCEEEEECCCC-CH---HHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHHH
T ss_conf             9997----5897999927630-36---89999999699----35999966889999999999986995998582899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99988889999999998632220889999998999999997269687087467421614898388998689999999999
Q gi|254780498|r  249 IKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH  328 (364)
Q Consensus       249 LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~  328 (364)
                      -|                                                   +|++++.+    .|+..++..|+..|.
T Consensus       138 ~~---------------------------------------------------~Gl~~vli----~sg~eSI~~A~~eA~  162 (169)
T pfam06506       138 EQ---------------------------------------------------AGLQGVLI----YSGKESVREAFEEAL  162 (169)
T ss_pred             HH---------------------------------------------------CCCCEEEE----ECCHHHHHHHHHHHH
T ss_conf             98---------------------------------------------------39957999----667899999999999


Q ss_pred             HHHHC
Q ss_conf             99960
Q gi|254780498|r  329 NMSQN  333 (364)
Q Consensus       329 ~~~~~  333 (364)
                      ++++.
T Consensus       163 ~l~~~  167 (169)
T pfam06506       163 ELARA  167 (169)
T ss_pred             HHHHH
T ss_conf             99974


No 40 
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.19  E-value=8  Score=18.76  Aligned_cols=115  Identities=19%  Similarity=0.323  Sum_probs=59.2

Q ss_pred             CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             95399970642678888875322556763220011055889845998613277789899999999999999985689996
Q gi|254780498|r  107 QAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCP  186 (364)
Q Consensus       107 ~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~P  186 (364)
                      ..| ++..|-+|.-         ++    -|.++-.+-......+.+|||.|...+.....+  .+ ..+.+.+.. .+|
T Consensus        31 g~~-viNlG~sG~g---------~l----e~~~a~~i~~~~a~~~vi~~g~N~~~~~~~~~~--~~-~~~V~~ir~-~~p   92 (177)
T cd01844          31 GLE-VINLGFSGNA---------RL----EPEVAELLRDVPADLYIIDCGPNIVGAEAMVRE--RL-GPLVKGLRE-THP   92 (177)
T ss_pred             CCC-EEECCCCCCC---------CC----CHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH--HH-HHHHHHHHH-HCC
T ss_conf             997-7714667543---------10----288999986189988999634678874789999--99-999999998-788


Q ss_pred             EEEEEECC------CCCCCC--------CHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCH
Q ss_conf             58998404------555556--------5799999999740245713200234554532456838997551
Q gi|254780498|r  187 SIGLLNVG------TEEIKG--------NDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGF  243 (364)
Q Consensus       187 rVgLLNiG------~E~~KG--------~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGF  243 (364)
                      ..-++=+.      .+...+        ++..++++..|++....++   -|+++.+++....+ .-.||-
T Consensus        93 ~tPIvlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~l---~~ldg~~l~g~~~~-~~~Dgi  159 (177)
T cd01844          93 DTPILLVSPRYCPDAELTPGRGKLTLAVRRALREAFEKLRADGVPNL---YYLDGEELLGPDGE-ALVDGI  159 (177)
T ss_pred             CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE---EEECCCCCCCCCCC-CCCCCC
T ss_conf             99789983367764446875278899999999999999997699987---99465120688767-787878


No 41 
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1.  Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=70.63  E-value=5.4  Score=19.84  Aligned_cols=68  Identities=24%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf             6899965899840455555657999999997402457132002345545324568389975512788999988
Q gi|254780498|r  181 AGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAAE  253 (364)
Q Consensus       181 ~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt~E  253 (364)
                      ..++||||+||+.+-|-.|...-.....+++++..    .|+-+ --..|..-.+|||+|-+=...+++....
T Consensus        82 ~~i~npkIlll~~~Le~~k~e~~~~~~~~~~~qE~----~~l~~-~v~~I~~~g~nVVl~~k~I~d~A~~~l~  149 (261)
T cd03334          82 SKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEK----EYLKN-LVSRIVALRPDVILVEKSVSRIAQDLLL  149 (261)
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH----HHHHH-HHHHHHHHCCCEEEECCCCCHHHHHHHH
T ss_conf             72558659998054244414344530999999999----99999-9999996099999988977989999999


No 42 
>KOG1731 consensus
Probab=69.08  E-value=8.3  Score=18.66  Aligned_cols=168  Identities=13%  Similarity=0.098  Sum_probs=104.0

Q ss_pred             ECCHHHHHHHHHHCCCCCCCEEEEC-CCCC-------CCCCCHHHHHHHHCCCCHHHHH----------HHHHHHCCCCE
Q ss_conf             7898999999862697515579977-8520-------1778306799971376427999----------99998549953
Q gi|254780498|r   48 YGDAKVCLPILDSHPLLKERSCFHH-CEVS-------IAMDERPADALRRGRNVSSMWR----------AIEAVKKNQAA  109 (364)
Q Consensus        48 vGdee~I~~~l~~~~~~~~ri~Ii~-a~~v-------I~mde~P~~AlR~kK~~SSm~~----------a~~lvk~g~aD  109 (364)
                      .-+...+..+-+..+-..+.+.|+. +++.       +.|-..+...+|..++ +++..          ..-+-++|+++
T Consensus       171 l~~~~~~~~l~~~~~~~~~yvAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d-~q~~~~~~l~~~~~~~~llfrnG~~q  249 (606)
T KOG1731         171 LKDTTTLEELDEGISTTANYVAIVFETEPSDLGWANLLNDLPSKQVGVRARLD-TQNFPLFGLKPDNFPLALLFRNGEQQ  249 (606)
T ss_pred             CCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEC-CHHCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             88864298875035661101689982377400788987634577740588862-02154324577875034443378611


Q ss_pred             EEEEECCHH-HHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             999706426-7888887532255676322001105588984599861327778989999999999999998568999658
Q gi|254780498|r  110 SVVTAGNTG-ALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSI  188 (364)
Q Consensus       110 a~VSaGnTG-A~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrV  188 (364)
                      .+--++.+. +++..--..||...--.+|++.++.++...+++  |+=- --|++.+-++-|=|=++... ++-+|-||+
T Consensus       250 ~l~~~~~s~~~y~~~I~~~lg~~~~a~~pt~~p~~~~~~~~~I--d~~~-~~l~~~~~V~~aDLeqAm~~-~L~~Ev~R~  325 (606)
T KOG1731         250 PLWPSSSSRSAYVKKIDDLLGDKNEASGPTLHPITATTAAPTI--DAPS-EVLNNQYFVYEADLEQAMSY-ILHIEVPRT  325 (606)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH--HCCH-HHCCCCCEEEHHHHHHHHHH-HHHHHHCCH
T ss_conf             1353445478899999998568533678876853223445023--2320-11376000207669999999-999863122


Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCC
Q ss_conf             9984045555565799999999740245713200234554532
Q gi|254780498|r  189 GLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIA  231 (364)
Q Consensus       189 gLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~  231 (364)
                      +++.     +---...|+=-.+|+..      |.|+-++++++
T Consensus       326 ~~i~-----g~~l~aLk~f~~ll~r~------~P~~~~~~~l~  357 (606)
T KOG1731         326 ALIR-----GENLAALKEFMHLLRRY------FPGTADGRRLV  357 (606)
T ss_pred             HHCC-----CCHHHHHHHHHHHHHHH------CCCCHHHHHHH
T ss_conf             3306-----75378899999999985------87871678899


No 43 
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009    The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=65.51  E-value=11  Score=18.03  Aligned_cols=191  Identities=17%  Similarity=0.092  Sum_probs=101.4

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHH--CCCCCCCEEEECCCCCC-----CC
Q ss_conf             3898239999746877781777999999998-5799179997898999999862--69751557997785201-----77
Q gi|254780498|r    8 QGGNVDTISLDLMGGDLGARDLILGASKFLE-AHPRIRFLMYGDAKVCLPILDS--HPLLKERSCFHHCEVSI-----AM   79 (364)
Q Consensus         8 ~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~-~~~~i~iiLvGdee~I~~~l~~--~~~~~~ri~Ii~a~~vI-----~m   79 (364)
                      ++++|++|++  |||--|=--.-.++...|. +.|.+++++.|.++-++..+-.  ..+.   +.-|++....     .+
T Consensus         1 ~~~~~~~~~~--~gGGTGG~fPAlA~a~~l~~~~~~~~v~~lG~~~g~e~~lv~~~~~~~---~~~i~~~gl~~~~~~~~   75 (368)
T TIGR01133         1 MMNKMKKVAL--AGGGTGGIFPALAVAEELIKRGPEVEVVWLGTKRGLEERLVPSKEGIE---FLTIPVGGLRRKGSKKL   75 (368)
T ss_pred             CCCCCEEEEE--ECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCE---EEEEEECCCCCCCCHHH
T ss_conf             9988228999--727830268999999999974893699985067750000343215741---77774010036551014


Q ss_pred             CCHHH-HHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC--CHHHH-HHHHHHH-CCCC-CCCCCCCHHHCCCCCCCCEE--
Q ss_conf             83067-9997137642799999998549953999706--42678-8888753-2255-67632200110558898459--
Q gi|254780498|r   80 DERPA-DALRRGRNVSSMWRAIEAVKKNQAASVVTAG--NTGAL-IAMARLC-LSRI-SGVDRPSLAAFWPTVKGKCI--  151 (364)
Q Consensus        80 de~P~-~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG--nTGA~-la~a~~~-lg~i-~Gv~RPala~~~Pt~~g~~v--  151 (364)
                      --.|. ..+      .+.+.+.+.+|+=+.|++|+.|  .++-. +|+...- +..+ +-=.+|+++.=|-++--+.|  
T Consensus        76 ~~~~~~~~~------~~~~~a~~~l~~~~p~~v~G~GGY~s~P~~~AA~l~g~iP~~~EQN~~pG~~Nk~ls~~A~~V~~  149 (368)
T TIGR01133        76 LKLPLLKLL------KAVLQARRILKKFKPDVVVGFGGYVSGPAGLAAKLLGRIPLILEQNAVPGLTNKLLSRFAKRVLV  149 (368)
T ss_pred             HHHHHHHHH------HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCEEEE
T ss_conf             678899999------99999999986008747987473678999999876679948986154125788887887443111


Q ss_pred             -EEE------------CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             -986------------13277789899999999999999985689996589984--0455555657999999997402
Q gi|254780498|r  152 -ILD------------VGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN--VGTEEIKGNDVLQESARLLRGE  214 (364)
Q Consensus       152 -llD------------~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN--iG~E~~KG~~~~kea~~LL~~~  214 (364)
                       +=+            +..|+..  +.+.++..- ..+.+.-..-..|+|=.+=  =|.+.  =|+.+.++...|.+.
T Consensus       150 ~f~~~~~~~~~~~~~~~~g~pvr--~~~~~~~~~-~~~~~~~~~~~~~~ilv~GGSQGA~~--lN~~vp~~~~~L~~~  222 (368)
T TIGR01133       150 SFPGAKKFFPAAEKVVVVGNPVR--EEIRSLPAA-RARKRFKLRPGKLRILVLGGSQGAKI--LNELVPKALAKLAEK  222 (368)
T ss_pred             ECHHHHCCCCCCCCEEEECCHHH--HHHHCCCCH-HHHHHHCCCCCCCEEEEECCCHHHHH--HHHHHHHHHHHHHHC
T ss_conf             05133226766675687014134--543037825-68886216899827999627376899--999999999886401


No 44 
>KOG3857 consensus
Probab=64.70  E-value=11  Score=17.93  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             CEEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCC-EEEEECCHH--------HHHHHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf             82399997468--7778177799999999857991-799978989--------999998626975155799778520177
Q gi|254780498|r   11 NVDTISLDLMG--GDLGARDLILGASKFLEAHPRI-RFLMYGDAK--------VCLPILDSHPLLKERSCFHHCEVSIAM   79 (364)
Q Consensus        11 ~m~kIAVDaMG--GD~~P~~vi~Ga~~al~~~~~i-~iiLvGdee--------~I~~~l~~~~~~~~ri~Ii~a~~vI~m   79 (364)
                      +||-.+.-.--  --+|+.+..|-... + +|.+. +.+|+-|+.        ..++.|++.++.   +++.|-.++   
T Consensus        38 k~~~~af~m~~s~~rfG~gv~~Evg~d-i-kn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~---~~vyD~v~~---  109 (465)
T KOG3857          38 KMMSVAFFMIPSTSRFGKGVLAEVGDD-I-KNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGIN---VEVYDKVQP---  109 (465)
T ss_pred             CCCEEEEEECCCHHHHCCHHHHHHHHH-H-HHCCCCCEEEEECCCHHHCCCHHHHHHHHHHCCCC---EEEECCCCC---
T ss_conf             643135786151332061168999999-8-71574425896077744414178999999975981---697247647---


Q ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8306799971376427999999985499539997064
Q gi|254780498|r   80 DERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGN  116 (364)
Q Consensus        80 de~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGn  116 (364)
                               . ...+|||.|++.+|+++.|+|||-|-
T Consensus       110 ---------e-Ptv~s~~~alefak~~~fDs~vaiGG  136 (465)
T KOG3857         110 ---------E-PTVGSVTAALEFAKKKNFDSFVAIGG  136 (465)
T ss_pred             ---------C-CCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             ---------9-86234999999987336655898768


No 45 
>KOG4797 consensus
Probab=61.81  E-value=9.7  Score=18.24  Aligned_cols=44  Identities=14%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89986899999999999996070689999999998767522233
Q gi|254780498|r  313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLDVHEK  356 (364)
Q Consensus       313 G~s~~~a~~~ai~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  356 (364)
                      ++.+..+|-|-|.+|.++|+..+.-.++++++-+++.+-|..+.
T Consensus        39 ~~~~VvaIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er   82 (123)
T KOG4797          39 SSGSVVAIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEER   82 (123)
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88866752148999999999999999999999999999999999


No 46 
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=60.49  E-value=13  Score=17.45  Aligned_cols=30  Identities=3%  Similarity=0.112  Sum_probs=10.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             9899999999999999985689996589984
Q gi|254780498|r  162 TVSHMVQLSILGSFFARSVAGINCPSIGLLN  192 (364)
Q Consensus       162 ~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN  192 (364)
                      +|+.-.+|..+...+.+. .+...-.++.|.
T Consensus        12 ~p~a~~~~~~la~~l~~~-~~~~~v~~~fle   41 (117)
T cd03414          12 DPDANADVAKIARLLEEG-TGFARVETAFAA   41 (117)
T ss_pred             CHHHHHHHHHHHHHHHHH-CCCCEEEEEEEC
T ss_conf             878999999999999976-899818887753


No 47 
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain  is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=59.33  E-value=14  Score=17.33  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=14.3

Q ss_pred             EEEEEEECCCCCCC--CHHHHHHHHHHHHH---CCCCEEEEECC
Q ss_conf             23999974687778--17779999999985---79917999789
Q gi|254780498|r   12 VDTISLDLMGGDLG--ARDLILGASKFLEA---HPRIRFLMYGD   50 (364)
Q Consensus        12 m~kIAVDaMGGD~~--P~~vi~Ga~~al~~---~~~i~iiLvGd   50 (364)
                      =+-+.||.=|.=.|  -..+-+++...++.   +..+.++.|++
T Consensus        15 dvv~vlD~SGSM~g~kl~~ak~a~~~il~~L~~~D~~~iv~Fs~   58 (190)
T cd01463          15 DIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSN   58 (190)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf             69999979998897349999999999998199877999999689


No 48 
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=56.61  E-value=10  Score=18.11  Aligned_cols=103  Identities=22%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHH----------HHHHHHHHCCCCCC
Q ss_conf             59986132777898999999999999999856899965899840455555657999----------99999740245713
Q gi|254780498|r  150 CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQ----------ESARLLRGECCGAF  219 (364)
Q Consensus       150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~k----------ea~~LL~~~~~~~~  219 (364)
                      -+++..|  ..-+|.++.=.|-.|..-   +-=..+||||+++.|.|--...+-.+          --+.+|++... ..
T Consensus       146 ~vil~~G--~~L~p~~i~llas~Gi~~---V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~-e~  219 (404)
T COG0303         146 DVILRAG--TRLTPAEIALLASLGIAE---VKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGG-EV  219 (404)
T ss_pred             CEEECCC--CCCCHHHHHHHHHCCCCE---EEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCC-CE
T ss_conf             8953488--792799999998689755---78733888999905854558888899985873679999999997599-24


Q ss_pred             CEECCCCH-----HHCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             20023455-----45324---568389975512788999988889999999998
Q gi|254780498|r  220 KYKGFIEA-----NDIAK---GFVDVIVTEGFSGNIAIKAAEGAVRHISGVLQK  265 (364)
Q Consensus       220 nF~GniEg-----~~i~~---g~~DVvV~DGFtGNi~LKt~EG~~~~~~~~lk~  265 (364)
                      .|.|-+.-     ++.+.   ..+||||+-|=+.       =|-..++...+++
T Consensus       220 ~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~S-------vG~~D~v~~~l~~  266 (404)
T COG0303         220 VDLGIVPDDPEALREAIEKALSEADVIITSGGVS-------VGDADYVKAALER  266 (404)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC-------CCCHHHHHHHHHH
T ss_conf             5335359998999999997752499999969866-------7614669999984


No 49 
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=54.20  E-value=16  Score=16.80  Aligned_cols=12  Identities=25%  Similarity=0.401  Sum_probs=3.7

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             657999999997
Q gi|254780498|r  200 GNDVLQESARLL  211 (364)
Q Consensus       200 G~~~~kea~~LL  211 (364)
                      +++.+++-.+.|
T Consensus        18 ~~~~~~~~a~~l   29 (130)
T PRK00923         18 NKEVVTEIAEKI   29 (130)
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999


No 50 
>COG4518 Mu-like prophage FluMu protein gp41 [Function unknown]
Probab=54.11  E-value=6.3  Score=19.43  Aligned_cols=39  Identities=21%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHH
Q ss_conf             996589984045555565799999999740245713200234554
Q gi|254780498|r  184 NCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAN  228 (364)
Q Consensus       184 ~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~  228 (364)
                      ..-||..+|.|.--.-  .-++--++||+.    +|.|+|||+|-
T Consensus        38 aaEriv~tn~gp~~~a--Sp~l~G~eLLrR----Qia~vG~i~GP   76 (122)
T COG4518          38 AAERIVITNGGPHAYA--SPVLMGMELLRR----QIAFVGNIQGP   76 (122)
T ss_pred             HHHHEEEECCCCCEEC--CHHHHHHHHHHH----HHHHHHCCCCC
T ss_conf             6646043089960232--758878999999----99987157788


No 51 
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1;  divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=48.31  E-value=20  Score=16.21  Aligned_cols=87  Identities=21%  Similarity=0.290  Sum_probs=53.4

Q ss_pred             HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEE---CCCCCCCCHHHHHHHHHH-
Q ss_conf             9999998549953999706426788888753225567632200110558898459986---132777898999999999-
Q gi|254780498|r   97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILD---VGATIGSTVSHMVQLSIL-  172 (364)
Q Consensus        97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD---~GAN~d~~~~~L~qfA~m-  172 (364)
                      ..|+.|++.|.+|+++| ..+=+++-++..++..+.--           ........|   +=-...-+.+++++|++| 
T Consensus       153 AqcA~L~k~g~vd~v~S-eDsD~l~fGa~~vlr~l~~~-----------~~~~~~~~~~~~i~~~l~l~~~~~id~~iL~  220 (316)
T cd00128         153 AQCAYLAKKGLVDAIIT-EDSDLLLFGAPRVYRNLFDS-----------GAKPVEEIDLEKILKELGLTREKLIDLAILL  220 (316)
T ss_pred             HHHHHHHHCCCEEEEEE-CCCHHHHCCCCEEEEECCCC-----------CCCCEEEEEHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999997798589996-56114532887788614546-----------8987699888997877399999999999972


Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999856899965899840455555657999999997402
Q gi|254780498|r  173 GSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGE  214 (364)
Q Consensus       173 Gs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~  214 (364)
                      |+-|..   ++  |.||              .+.|++|+++.
T Consensus       221 G~Dy~~---gi--~giG--------------~k~A~kli~~~  243 (316)
T cd00128         221 GCDYTE---GI--PGIG--------------PVTALKLIKKY  243 (316)
T ss_pred             CCCCCC---CC--CCCC--------------HHHHHHHHHHH
T ss_conf             988789---99--9735--------------99999999991


No 52 
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=46.79  E-value=21  Score=16.10  Aligned_cols=30  Identities=33%  Similarity=0.377  Sum_probs=16.8

Q ss_pred             HHHHHHH---HHHCCCCEEEEEECCHHHHHHHH
Q ss_conf             7999999---98549953999706426788888
Q gi|254780498|r   95 SMWRAIE---AVKKNQAASVVTAGNTGALIAMA  124 (364)
Q Consensus        95 Sm~~a~~---lvk~g~aDa~VSaGnTGA~la~a  124 (364)
                      +|....+   .++.|..=.=-|+||||--+|..
T Consensus        48 ~mI~~Ae~~G~l~pG~tIVE~TSGNTGIaLA~v   80 (300)
T COG0031          48 YMIEDAEKRGLLKPGGTIVEATSGNTGIALAMV   80 (300)
T ss_pred             HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf             999999984987999989970897279999999


No 53 
>KOG0117 consensus
Probab=46.22  E-value=22  Score=16.01  Aligned_cols=18  Identities=11%  Similarity=0.272  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHCCCCEEEE
Q ss_conf             799999998549953999
Q gi|254780498|r   95 SMWRAIEAVKKNQAASVV  112 (364)
Q Consensus        95 Sm~~a~~lvk~g~aDa~V  112 (364)
                      -|...+.-|-+|-.|..|
T Consensus       180 eIlee~~kVteGVvdViv  197 (506)
T KOG0117         180 EILEEMKKVTEGVVDVIV  197 (506)
T ss_pred             HHHHHHHHHCCCEEEEEE
T ss_conf             999999861787468997


No 54 
>pfam09338 Gly_reductase Glycine/sarcosine/betaine reductase component B subunits. This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions. sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin Acetyl phosphate + NH(3) + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin.
Probab=44.56  E-value=23  Score=15.85  Aligned_cols=32  Identities=28%  Similarity=0.492  Sum_probs=17.8

Q ss_pred             EEEEECCEEEEE--CCCCCHHHHHHHHHHHHHHH
Q ss_conf             674216148983--88998689999999999999
Q gi|254780498|r  300 VLLGVDGLVVKG--HGSSDAKSIFNVLGIAHNMS  331 (364)
Q Consensus       300 ~llGl~g~vik~--HG~s~~~a~~~ai~~a~~~~  331 (364)
                      -.||++|++|--  -|+.|.--++|....-..-+
T Consensus       300 ~~LgaDgvIvseEG~GNPD~Dl~m~~~k~E~~GI  333 (428)
T pfam09338       300 EMLGADGVIVSEEGFGNPDADLMMNCRKLEEKGI  333 (428)
T ss_pred             HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9859978999435588942789999999998699


No 55 
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=43.57  E-value=6.3  Score=19.42  Aligned_cols=72  Identities=25%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC
Q ss_conf             59986132777898999999999999999856899965899840----45555565799999999740245713200234
Q gi|254780498|r  150 CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV----GTEEIKGNDVLQESARLLRGECCGAFKYKGFI  225 (364)
Q Consensus       150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi----G~E~~KG~~~~kea~~LL~~~~~~~~nF~Gni  225 (364)
                      ..++|+|+-|--=.+.+.+...-+     .+.+++     |+.+    +..-.+|+-...++...+++            
T Consensus        23 ~~vlDLg~aPGgwsq~~~~~~~~~-----~v~~vD-----l~~~~~~~~~~~i~gDi~~~~~~~~i~~------------   80 (176)
T pfam01728        23 KTVLDLGAAPGGFSQVLLERGAKG-----RVVAVD-----LGPMKPIQGVTFLRGDITDPETLEKLLE------------   80 (176)
T ss_pred             CEEEEECCCCCHHHHHHHHHCCCC-----EEEEEE-----CCCCCCCCCCEEECCCCCCHHHHHHHHH------------
T ss_conf             999996899976999999856687-----399997-----3446567784565167668789999999------------


Q ss_pred             CHHHCCCCCCCEEEECC---HHHHH
Q ss_conf             55453245683899755---12788
Q gi|254780498|r  226 EANDIAKGFVDVIVTEG---FSGNI  247 (364)
Q Consensus       226 Eg~~i~~g~~DVvV~DG---FtGNi  247 (364)
                          .+.+.+|+|+|||   ++||-
T Consensus        81 ----~~~~~~DlV~sD~a~~~~g~~  101 (176)
T pfam01728        81 ----LLPGKVDLVLCDGAPNVSGLE  101 (176)
T ss_pred             ----HCCCCCCEEEECCCCCCCCCC
T ss_conf             ----739984689733665656773


No 56 
>KOG1099 consensus
Probab=43.54  E-value=12  Score=17.67  Aligned_cols=16  Identities=31%  Similarity=0.322  Sum_probs=8.2

Q ss_pred             HHHHCCCCEEEEEECC
Q ss_conf             9985499539997064
Q gi|254780498|r  101 EAVKKNQAASVVTAGN  116 (364)
Q Consensus       101 ~lvk~g~aDa~VSaGn  116 (364)
                      +....-+||-+||-|-
T Consensus       109 ~hfggekAdlVvcDGA  124 (294)
T KOG1099         109 EHFGGEKADLVVCDGA  124 (294)
T ss_pred             HHHCCCCCCEEEECCC
T ss_conf             9857997667884799


No 57 
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=41.66  E-value=16  Score=16.79  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf             2556763220011055889845998613277789
Q gi|254780498|r  129 SRISGVDRPSLAAFWPTVKGKCIILDVGATIGST  162 (364)
Q Consensus       129 g~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~  162 (364)
                      |--.-|-|.|+..   +.++..+|+|||.|+-.+
T Consensus       181 G~~~eVGRSc~l~---~~~~~~illDcG~~~~~~  211 (630)
T TIGR03675       181 GGFREVGRSALLL---STPESRILLDCGVNVGAN  211 (630)
T ss_pred             CCCCCCCCEEEEE---ECCCEEEEEECCCCCCCC
T ss_conf             6767026458999---639817999888887777


No 58 
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=41.56  E-value=26  Score=15.56  Aligned_cols=94  Identities=17%  Similarity=0.260  Sum_probs=52.0

Q ss_pred             HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCE-E---EEECC---CCCCCCHHHHHHH
Q ss_conf             999999854995399970642678888875322556763220011055889845-9---98613---2777898999999
Q gi|254780498|r   97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKC-I---ILDVG---ATIGSTVSHMVQL  169 (364)
Q Consensus        97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~-v---llD~G---AN~d~~~~~L~qf  169 (364)
                      ..|+.|++.|.+||++| -.+-+++-++..+++.+.--.    ...+|...... +   ++|+-   -..+-+.++|+++
T Consensus       155 aqca~L~k~g~vdav~S-eD~D~l~fG~~~virnl~~~g----~~k~~~~~~~~~~~~e~i~l~~~l~~l~lt~eqfidl  229 (338)
T TIGR03674       155 AQAAYMAKKGDVDYVGS-QDYDSLLFGAPRLVRNLTISG----KRKLPGKNIYVEVKPELIELEEVLSELGITREQLIDI  229 (338)
T ss_pred             HHHHHHHHCCCEEEEEC-CCHHHHHCCCCEEEHHHCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999997497259961-540033228765101112455----5135664543324577830998887738999999999


Q ss_pred             HHH-HHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999-999999856899965899840455555657999999997402
Q gi|254780498|r  170 SIL-GSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGE  214 (364)
Q Consensus       170 A~m-Gs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~  214 (364)
                      ++| |+-|...+     |.||.              +.|++|++++
T Consensus       230 cIL~GcDY~~gI-----~GIG~--------------k~A~klIkk~  256 (338)
T TIGR03674       230 AILVGTDYNEGV-----KGIGP--------------KTALKLIKEH  256 (338)
T ss_pred             HHHHCCCCCCCC-----CCCCH--------------HHHHHHHHHH
T ss_conf             997087567899-----98568--------------9999999985


No 59 
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345   These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=41.41  E-value=26  Score=15.54  Aligned_cols=189  Identities=19%  Similarity=0.210  Sum_probs=92.3

Q ss_pred             HHHHHHCC-CCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             99998579-91799978989999998626975155799778520177830679997137642799999998549953999
Q gi|254780498|r   34 SKFLEAHP-RIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVV  112 (364)
Q Consensus        34 ~~al~~~~-~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~V  112 (364)
                      ..+|+.-| +..++||||.+++=+. ..-..+.+-+..-+.|. +..    ....|..++ |+|..++.-++.|+.=.+-
T Consensus       473 ~~lL~a~P~~a~lllVGD~DQLPSV-~pG~VL~DLi~s~~iP~-~~L----T~vyRQ~~~-S~Ii~~Ah~~~~G~~Pvln  545 (769)
T TIGR01448       473 SSLLAAVPDHARLLLVGDADQLPSV-GPGQVLKDLIQSKVIPV-TRL----TKVYRQAEG-SSIITLAHKILQGEAPVLN  545 (769)
T ss_pred             HHHHHHCCCCCEEEEECCCCCCCCC-CCCHHHHHHHHCCCCCE-EEC----CCEEEECCC-CHHHHHHHHHHCCCCCCCC
T ss_conf             9998617977779888376888988-64408999984688661-212----111241136-6467888987317887523


Q ss_pred             EECCHHHH---------H-HHHHHHCC---------CCCCCCCCCHHHCCCCCCCCE-EEEECCCCCCCCHHHHHHHHHH
Q ss_conf             70642678---------8-88875322---------556763220011055889845-9986132777898999999999
Q gi|254780498|r  113 TAGNTGAL---------I-AMARLCLS---------RISGVDRPSLAAFWPTVKGKC-IILDVGATIGSTVSHMVQLSIL  172 (364)
Q Consensus       113 SaGnTGA~---------l-a~a~~~lg---------~i~Gv~RPala~~~Pt~~g~~-vllD~GAN~d~~~~~L~qfA~m  172 (364)
                      |.--....         + ..+..+..         +-.||.=-.|-++-|=.+|.. +            ++|      
T Consensus       546 ss~~~~Df~~~~~~~s~~e~~~~~i~~~v~~~~~~a~~~Gi~~~dIQVLaPM~kG~~Gi------------~~L------  607 (769)
T TIGR01448       546 SSSAKKDFKFLKLDRSEPEEAAKHIPLMVEKIVGAAKKKGIPGADIQVLAPMYKGELGI------------KAL------  607 (769)
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH------------HHH------
T ss_conf             24467667777640010106667899999887789871798600001525898984017------------888------


Q ss_pred             HHHHHHHHCCC----CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHH
Q ss_conf             99999985689----99658998404555556579999999974024571320023455453245683899755127889
Q gi|254780498|r  173 GSFFARSVAGI----NCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIA  248 (364)
Q Consensus       173 Gs~yak~~~~~----~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~  248 (364)
                       ...-+.+|+=    +.+.|  =--+.+-.||+.++|---.-=.+-+-+++-++=-|+...-..-+-|+|||| |-||.+
T Consensus       608 -N~~Lq~~LNP~qkG~~~~~--~~~~~~~R~GDrV~Qt~Ndyn~e~FNGD~G~I~~i~~a~~~~~k~~~~~~d-FdG~~~  683 (769)
T TIGR01448       608 -NQELQDLLNPKQKGDQEVI--ELKEVEYRKGDRVMQTKNDYNKEVFNGDLGVIVEIEKAKEGELKKDLVVVD-FDGNEV  683 (769)
T ss_pred             -HHHHHHHCCCCCCCCCCEE--EECCEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECHHCCCCCCCEEEEE-ECCCEE
T ss_conf             -8999997088323785206--515554468872465200765553366630445640022032336358998-759767


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780498|r  249 IKA  251 (364)
Q Consensus       249 LKt  251 (364)
                      .=+
T Consensus       684 ~~~  686 (769)
T TIGR01448       684 LYT  686 (769)
T ss_pred             EEC
T ss_conf             735


No 60 
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=39.89  E-value=27  Score=15.40  Aligned_cols=44  Identities=23%  Similarity=0.126  Sum_probs=23.4

Q ss_pred             CCCCCCEEEEEECCC-CCCCCCHHHHHHHHHHHHCC-CCCCCEECC
Q ss_conf             689996589984045-55556579999999974024-571320023
Q gi|254780498|r  181 AGINCPSIGLLNVGT-EEIKGNDVLQESARLLRGEC-CGAFKYKGF  224 (364)
Q Consensus       181 ~~~~~PrVgLLNiG~-E~~KG~~~~kea~~LL~~~~-~~~~nF~Gn  224 (364)
                      +++..++.-++++|- ++.||-+..-+|++.|++.. .-.+-++|.
T Consensus       186 ~~~~~~~~vi~~vGRl~~~Kg~~~Li~A~~~l~~~~~~~~l~ivG~  231 (358)
T cd03812         186 LGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGD  231 (358)
T ss_pred             HCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             3899898699996047665171889999998651088823999627


No 61 
>TIGR00378 cax calcium/proton exchanger; InterPro: IPR004798 This is a group of calcium/proton exchanger proteins. In Arabidopsis thaliana the transporter is responsible for maintaining low cytosolic-free Ca2+ concentrations in the plant cells by catalyzing pH gradient-energized vacuolar Ca2+ accumulation ..
Probab=39.64  E-value=26  Score=15.57  Aligned_cols=81  Identities=31%  Similarity=0.420  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHCCCCCCEE-EEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHH
Q ss_conf             9999999998568999658-998404555556579999999974024571320023455453245683899755127889
Q gi|254780498|r  170 SILGSFFARSVAGINCPSI-GLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIA  248 (364)
Q Consensus       170 A~mGs~yak~~~~~~~PrV-gLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~  248 (364)
                      |.||.+.-+ +.-+-=||+ ||||    .+=||..     +|.=                                -=++
T Consensus        35 a~mg~ATEe-la~~aGp~iGGLLN----ATFGNAv-----ELI~--------------------------------s~iA   72 (363)
T TIGR00378        35 AYMGRATEE-LAVVAGPRIGGLLN----ATFGNAV-----ELIV--------------------------------SLIA   72 (363)
T ss_pred             HHHHHHHHH-HHHHHCCCCCCHHC----CHHHHHH-----HHHH--------------------------------HHHH
T ss_conf             998656788-89883677672120----1244589-----9999--------------------------------9998


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             9998888999999999863222088999999899999999726968
Q gi|254780498|r  249 IKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPR  294 (364)
Q Consensus       249 LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~  294 (364)
                      ||  ||..+.+...+-.++-+|++==+|..+.-+.+|+-+|.|++.
T Consensus        73 LK--eGl~~iV~Asl~GS~lgNLLLV~Gl~ff~GGl~yk~Q~Fn~~  116 (363)
T TIGR00378        73 LK--EGLVEIVKASLTGSVLGNLLLVLGLAFFLGGLKYKRQEFNQL  116 (363)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHH
T ss_conf             60--025678899999999999999999999864642010453478


No 62 
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs.  Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=39.39  E-value=28  Score=15.35  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=55.3

Q ss_pred             EECCCCCCCCHHHHHH-HHHHHH-----------HHHHHHCCCCCCEEEEEECCC-------------CCCCCCHHHHHH
Q ss_conf             8613277789899999-999999-----------999985689996589984045-------------555565799999
Q gi|254780498|r  153 LDVGATIGSTVSHMVQ-LSILGS-----------FFARSVAGINCPSIGLLNVGT-------------EEIKGNDVLQES  207 (364)
Q Consensus       153 lD~GAN~d~~~~~L~q-fA~mGs-----------~yak~~~~~~~PrVgLLNiG~-------------E~~KG~~~~kea  207 (364)
                      --+.-|+|.+|.+|.. +-++|-           ...-.+||.+.|++.--|.|.             ++.-...+++.+
T Consensus       185 hrT~~g~d~D~~~l~~~~lR~gla~g~~G~~~~t~l~DiLfGtP~p~~~~~nlGvl~~d~VNI~vhGH~P~l~e~iv~~a  264 (613)
T cd01915         185 HRTHTGVDSDPVSLLLHSLRLGLAAGYTGLMLATELQDILFGTPKPVVSEANLGVLDPDYVNIAVHGHNPVLSEAIVEAA  264 (613)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             88536899999999999999998532688899999999983899873424676525889736997189874999999997


Q ss_pred             H-----HHHHHCCCCCCCEECCCC-HHHCC-------------------CCCCCEEEECC
Q ss_conf             9-----997402457132002345-54532-------------------45683899755
Q gi|254780498|r  208 A-----RLLRGECCGAFKYKGFIE-ANDIA-------------------KGFVDVIVTEG  242 (364)
Q Consensus       208 ~-----~LL~~~~~~~~nF~GniE-g~~i~-------------------~g~~DVvV~DG  242 (364)
                      -     ++-|+...+.||++|-+. |+|++                   +|.+|.+|.|=
T Consensus       265 ~~~e~~~~Ak~aGAkGI~v~G~cCTG~E~l~R~gip~agN~~~qEl~l~TGAvDa~vvD~  324 (613)
T cd01915         265 RELELQEEAKAAGAKGINVVGICCTGNELLMRHGVPLAGNWLSQELAIATGAVDAMVVDV  324 (613)
T ss_pred             CCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEC
T ss_conf             197999999974988646999936429888616970005669889999837704899843


No 63 
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=39.11  E-value=28  Score=15.32  Aligned_cols=16  Identities=25%  Similarity=0.428  Sum_probs=5.3

Q ss_pred             CEEEEEECCCCCCCCC
Q ss_conf             6589984045555565
Q gi|254780498|r  186 PSIGLLNVGTEEIKGN  201 (364)
Q Consensus       186 PrVgLLNiG~E~~KG~  201 (364)
                      |.+-+.=.|.-+..|+
T Consensus        99 p~~~v~i~GhtD~~Gt  114 (173)
T PRK10802         99 PSYKVTVEGHADERGT  114 (173)
T ss_pred             CCEEEEEEEECCCCCC
T ss_conf             9917999874699884


No 64 
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR014191   Members of this entry represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR, see IPR012837 from INTERPRO). Members of this entry are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of these proteins as RNR activating proteins is partly from pairing with the candidate RNR and further supported by the finding that upstream of these operons are examples of a conserved regulatory element that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes ..
Probab=36.53  E-value=31  Score=15.07  Aligned_cols=40  Identities=15%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             EEEEECCCCC----CCCHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf             9999746877----781777999999998579917999789899
Q gi|254780498|r   14 TISLDLMGGD----LGARDLILGASKFLEAHPRIRFLMYGDAKV   53 (364)
Q Consensus        14 kIAVDaMGGD----~~P~~vi~Ga~~al~~~~~i~iiLvGdee~   53 (364)
                      |++|=-||||    .-|+++++=+..+-++++++++.||-=.+.
T Consensus        70 K~Cv~FlGGEPLAPw~~~~l~~Ll~~~k~~~~~L~v~LYTG~~~  113 (165)
T TIGR02826        70 KVCVLFLGGEPLAPWEPEALLSLLKLVKEEHAGLKVCLYTGREH  113 (165)
T ss_pred             HHEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             02020047898873376899999999997538866888508854


No 65 
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=35.77  E-value=19  Score=16.35  Aligned_cols=13  Identities=23%  Similarity=0.618  Sum_probs=6.6

Q ss_pred             EEEEECCCCCCCC
Q ss_conf             5998613277789
Q gi|254780498|r  150 CIILDVGATIGST  162 (364)
Q Consensus       150 ~vllD~GAN~d~~  162 (364)
                      .+|+|||.|+-+.
T Consensus       205 rVLlDcG~n~a~~  217 (637)
T COG1782         205 RVLLDCGVNVAGN  217 (637)
T ss_pred             EEEEECCCCCCCC
T ss_conf             3899636567788


No 66 
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136   This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=35.49  E-value=32  Score=14.96  Aligned_cols=16  Identities=19%  Similarity=0.356  Sum_probs=7.6

Q ss_pred             CCEEEEECCHHHHHHH
Q ss_conf             9179997898999999
Q gi|254780498|r   42 RIRFLMYGDAKVCLPI   57 (364)
Q Consensus        42 ~i~iiLvGdee~I~~~   57 (364)
                      ..+|+||||.++++|+
T Consensus       529 GaKvVLvGD~~QLqaI  544 (888)
T TIGR02768       529 GAKVVLVGDPEQLQAI  544 (888)
T ss_pred             CCCEEEECCHHHHCHH
T ss_conf             7605984885782442


No 67 
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen.  It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=35.39  E-value=32  Score=14.95  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHC--CCCCCCEEEEC-----CHHHHHHHHHHHHHH
Q ss_conf             99658998404555556579999999974024571320023455453--24568389975-----512788999988889
Q gi|254780498|r  184 NCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDI--AKGFVDVIVTE-----GFSGNIAIKAAEGAV  256 (364)
Q Consensus       184 ~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i--~~g~~DVvV~D-----GFtGNi~LKt~EG~~  256 (364)
                      ++|.+-|+=+|.    |.+. .+--++.++....++.|.|++...++  +-..+||.|.=     +|.+.+-.|..|.++
T Consensus       247 ~~~~~~l~ivG~----G~~~-~~l~~~~~~~~~~~V~~~G~v~~~~~~~~~~~adi~v~p~~~~~~~~~~~P~kllEAma  321 (394)
T cd03794         247 DRPDIRFLIVGD----GPEK-EELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA  321 (394)
T ss_pred             CCCCEEEEEECC----CHHH-HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             589859999568----5167-89999999819994998163046136778742969999277754457735689999998


Q ss_pred             H
Q ss_conf             9
Q gi|254780498|r  257 R  257 (364)
Q Consensus       257 ~  257 (364)
                      .
T Consensus       322 ~  322 (394)
T cd03794         322 A  322 (394)
T ss_pred             C
T ss_conf             4


No 68 
>pfam06874 FBPase_2 Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.
Probab=35.23  E-value=32  Score=14.94  Aligned_cols=12  Identities=17%  Similarity=0.249  Sum_probs=4.7

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999863222
Q gi|254780498|r  259 ISGVLQKSLNRT  270 (364)
Q Consensus       259 ~~~~lk~~~~~~  270 (364)
                      +++.|+.+|..|
T Consensus       372 v~~~L~~sF~~s  383 (641)
T pfam06874       372 VIDKLLSSFQNS  383 (641)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998617


No 69 
>PRK07048 serine/threonine dehydratase; Validated
Probab=33.77  E-value=13  Score=17.46  Aligned_cols=56  Identities=21%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CCCCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHHHHCCC
Q ss_conf             7852017783-0679997137642799999998549953999--706426788888753225
Q gi|254780498|r   72 HCEVSIAMDE-RPADALRRGRNVSSMWRAIEAVKKNQAASVV--TAGNTGALIAMARLCLSR  130 (364)
Q Consensus        72 ~a~~vI~mde-~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~V--SaGnTGA~la~a~~~lg~  130 (364)
                      .++-+..++. .|.-++|- |. + .+.-.++-++....++|  |+||+|.-+|.+-..+|.
T Consensus        38 g~~v~lK~E~~qptGSFK~-RG-a-~~~l~~l~~~~~~~gvV~aSsGN~g~avA~aa~~~G~   96 (321)
T PRK07048         38 GAQVFFKCENFQRMGAFKF-RG-A-YNALSQFSAEQRRAGVVTFSSGNHAQAIALAARLLGI   96 (321)
T ss_pred             CCEEEEEECCCCCCCCCHH-HH-H-HHHHHHCCHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             9979998325898788789-99-9-9999960177456847996787379999999987099


No 70 
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=33.29  E-value=35  Score=14.74  Aligned_cols=12  Identities=50%  Similarity=0.725  Sum_probs=7.1

Q ss_pred             CCEEEEEECCHH
Q ss_conf             953999706426
Q gi|254780498|r  107 QAASVVTAGNTG  118 (364)
Q Consensus       107 ~aDa~VSaGnTG  118 (364)
                      ++|.+++.|-|+
T Consensus        58 ~~DlIIttGG~s   69 (133)
T cd00758          58 EADLVLTTGGTG   69 (133)
T ss_pred             CCCEEEECCCCC
T ss_conf             499999938866


No 71 
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.28  E-value=26  Score=15.56  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=23.4

Q ss_pred             CHHHCCCCCCCEEEECCHHHHHHHHHHH
Q ss_conf             5545324568389975512788999988
Q gi|254780498|r  226 EANDIAKGFVDVIVTEGFSGNIAIKAAE  253 (364)
Q Consensus       226 Eg~~i~~g~~DVvV~DGFtGNi~LKt~E  253 (364)
                      -+.+||-..|-.++.|||.+.|+-..-|
T Consensus        98 vP~~IfPeecGlilsDGyGa~ilReApe  125 (164)
T COG5321          98 VPDEIFPEECGLILSDGYGAEILREAPE  125 (164)
T ss_pred             CCCCCCCCCCCEEEECCCCHHHHHCCCC
T ss_conf             8634386667757654623877740854


No 72 
>KOG1499 consensus
Probab=33.12  E-value=35  Score=14.72  Aligned_cols=78  Identities=21%  Similarity=0.322  Sum_probs=51.7

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC-CC-EECCCCH
Q ss_conf             599861327778989999999999999998568999658998404555556579999999974024571-32-0023455
Q gi|254780498|r  150 CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGA-FK-YKGFIEA  227 (364)
Q Consensus       150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~-~n-F~GniEg  227 (364)
                      -++||+|.-    .-.|-.||.-.-  |+.++.++.               ++..+-|-++.+.....+ |. ..|-||.
T Consensus        62 K~VlDVGcG----tGILS~F~akAG--A~~V~aVe~---------------S~ia~~a~~iv~~N~~~~ii~vi~gkvEd  120 (346)
T KOG1499          62 KTVLDVGCG----TGILSMFAAKAG--ARKVYAVEA---------------SSIADFARKIVKDNGLEDVITVIKGKVED  120 (346)
T ss_pred             CEEEECCCC----CCHHHHHHHHHC--CCEEEEEEC---------------HHHHHHHHHHHHHCCCCCEEEEEECCEEE
T ss_conf             789975788----128899988737--533999962---------------68999999999856866059995030578


Q ss_pred             HHCCCCCCCEEEECCHHHHHHH
Q ss_conf             4532456838997551278899
Q gi|254780498|r  228 NDIAKGFVDVIVTEGFSGNIAI  249 (364)
Q Consensus       228 ~~i~~g~~DVvV~DGFtGNi~L  249 (364)
                      -+|...++||+|+.- -|.-+|
T Consensus       121 i~LP~eKVDiIvSEW-MGy~Ll  141 (346)
T KOG1499         121 IELPVEKVDIIVSEW-MGYFLL  141 (346)
T ss_pred             EECCCCCEEEEEEHH-HHHHHH
T ss_conf             764755402996301-247877


No 73 
>PRK10073 predicted glycosyl transferase; Provisional
Probab=33.09  E-value=35  Score=14.72  Aligned_cols=38  Identities=29%  Similarity=0.560  Sum_probs=15.1

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCC
Q ss_conf             6589984045555565799999999740245713200234554532
Q gi|254780498|r  186 PSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIA  231 (364)
Q Consensus       186 PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~  231 (364)
                      |+|-+++   +++.|-...+.+--...  . +  .|+.|+-++|.+
T Consensus        61 ~~i~vi~---~~N~G~s~ARN~gl~~a--~-G--~yi~f~DsDD~l   98 (329)
T PRK10073         61 PHVRLLH---QANAGASVARNTGLAVA--T-G--KYVAFVDADDEV   98 (329)
T ss_pred             CCEEEEE---CCCCCHHHHHHHHHHHC--C-C--CEEEEECCCCCC
T ss_conf             9899996---68886189999999974--8-8--889997577275


No 74 
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.29  E-value=36  Score=14.64  Aligned_cols=96  Identities=20%  Similarity=0.331  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf             77999999998579917999789899999986269751557997785201778306799971376427999999985499
Q gi|254780498|r   28 DLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQ  107 (364)
Q Consensus        28 ~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~  107 (364)
                      .++..+   .++.|+.+++.+||..       ..|                -.+++...++.    -++...-.+++.+ 
T Consensus        19 sVlrei---~~~LP~e~~iY~~D~a-------~~P----------------YG~ks~e~I~~----~~~~i~~~l~~~~-   67 (269)
T COG0796          19 SVLREI---RRQLPDEDIIYVGDTA-------RFP----------------YGEKSEEEIRE----RTLEIVDFLLERG-   67 (269)
T ss_pred             HHHHHH---HHHCCCCCEEEEECCC-------CCC----------------CCCCCHHHHHH----HHHHHHHHHHHCC-
T ss_conf             999999---9978998689981477-------899----------------99899999999----9999999999729-


Q ss_pred             CEEEEEECCHHHHHHHHHH-------HCCCCCCCCCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             5399970642678888875-------32255676322001105588984599861327
Q gi|254780498|r  108 AASVVTAGNTGALIAMARL-------CLSRISGVDRPSLAAFWPTVKGKCIILDVGAT  158 (364)
Q Consensus       108 aDa~VSaGnTGA~la~a~~-------~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN  158 (364)
                      .+.+|=|.||...++...+       ++|.+|+| |||+..   |+++..-++-.=+.
T Consensus        68 ik~lVIACNTASa~al~~LR~~~~iPVvGviPai-k~A~~~---t~~~~IgViaT~~T  121 (269)
T COG0796          68 IKALVIACNTASAVALEDLREKFDIPVVGVIPAI-KPAVAL---TRNGRIGVIATPAT  121 (269)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCH-HHHHHH---CCCCEEEEEECCCH
T ss_conf             9889996651789999999986799989953154-999973---13875899955112


No 75 
>PRK03980 flap endonuclease-1; Provisional
Probab=31.65  E-value=37  Score=14.57  Aligned_cols=94  Identities=23%  Similarity=0.318  Sum_probs=51.9

Q ss_pred             HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC------CCCEEEE-ECCCCCCCCHHHHHHH
Q ss_conf             99999985499539997064267888887532255676322001105588------9845998-6132777898999999
Q gi|254780498|r   97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTV------KGKCIIL-DVGATIGSTVSHMVQL  169 (364)
Q Consensus        97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~------~g~~vll-D~GAN~d~~~~~L~qf  169 (364)
                      ..|+.|++.|.+||++| -.+-+++-++..+++.+..-.+    .-+|..      ....+-+ ++=-..+-+.++|+++
T Consensus       108 aqca~L~~~g~v~~v~S-eD~D~l~~G~~~~lrnl~~~~~----~k~~~~~~~~~~~~e~i~l~~il~~l~lt~eqfidl  182 (295)
T PRK03980        108 AQAAYMVKKGDAWAVAS-QDYDSLLFGAPRLVRNLTISGK----RKLPGKNVYVEVKPELIELEEVLKELGITREQLIDI  182 (295)
T ss_pred             HHHHHHHHCCCEEEEEE-CCCCHHHCCCHHHHHHCCCCCC----CCCCCCCCCCCCCHHHEEHHHHHHHCCCCHHHHHHH
T ss_conf             99999997697589970-4634121176057642013566----024564432124654423998998839999999999


Q ss_pred             HHH-HHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999-999999856899965899840455555657999999997402
Q gi|254780498|r  170 SIL-GSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGE  214 (364)
Q Consensus       170 A~m-Gs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~  214 (364)
                      ++| |+-|..   +|  |.||.              +.|++|++++
T Consensus       183 cIL~GcDY~~---gI--~gIGp--------------k~Alklikk~  209 (295)
T PRK03980        183 AILVGTDYNP---GV--KGIGP--------------KTALKLIKKH  209 (295)
T ss_pred             HHHCCCCCCC---CC--CCCCH--------------HHHHHHHHHH
T ss_conf             9845888999---99--98429--------------9999999996


No 76 
>PRK03343 transaldolase; Validated
Probab=31.55  E-value=18  Score=16.61  Aligned_cols=80  Identities=24%  Similarity=0.319  Sum_probs=53.7

Q ss_pred             HHHHHHHHHC-----CCCEEEEE-------ECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC-CC---EEEEECCCCC
Q ss_conf             9999999854-----99539997-------0642678888875322556763220011055889-84---5998613277
Q gi|254780498|r   96 MWRAIEAVKK-----NQAASVVT-------AGNTGALIAMARLCLSRISGVDRPSLAAFWPTVK-GK---CIILDVGATI  159 (364)
Q Consensus        96 m~~a~~lvk~-----g~aDa~VS-------aGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~-g~---~vllD~GAN~  159 (364)
                      +..|+.+++.     +--||+||       |-+|.++++-++....+   |.||-+|.-+|... |-   .-++-.|.||
T Consensus        86 i~~A~d~l~pvy~~t~G~DG~VSlEVdP~la~Dt~~Ti~eA~rL~~~---v~rpN~mIKIPaT~aGl~Ai~~Lia~GIsV  162 (370)
T PRK03343         86 VRNACDVLRPVYEATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAA---VDRPNLMIKIPATPEGLPAIEALIAEGISV  162 (370)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHCCHHHHHHHHHHHHHH---HCCCCEEEECCCCHHHHHHHHHHHHCCCCE
T ss_conf             99999998999973599872799964800101848899999999997---189973896588440389999999879856


Q ss_pred             CCCHH-HHHHHHHHHHHHHH
Q ss_conf             78989-99999999999999
Q gi|254780498|r  160 GSTVS-HMVQLSILGSFFAR  178 (364)
Q Consensus       160 d~~~~-~L~qfA~mGs~yak  178 (364)
                      +++-- -+-|+-..--+|.+
T Consensus       163 NvTLiFS~~qy~~v~eAy~~  182 (370)
T PRK03343        163 NVTLIFSVERYRAVADAYLR  182 (370)
T ss_pred             EEEEECCHHHHHHHHHHHHH
T ss_conf             25774159999999999999


No 77 
>pfam11725 AvrE Pathogenicity factor. This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas.
Probab=30.93  E-value=34  Score=14.78  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=18.6

Q ss_pred             HHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCC
Q ss_conf             99999997269687087467421614898388998
Q gi|254780498|r  282 KSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSD  316 (364)
Q Consensus       282 ~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~  316 (364)
                      +.|++|+..+.-..|..+++||=.--|+..||--.
T Consensus       968 k~Le~fR~ELE~hs~~a~~~lGq~~GVLn~hGe~~ 1002 (1771)
T pfam11725       968 KDLEQFREELENHSTTAAILLGQQQGVLNSHGEIN 1002 (1771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
T ss_conf             99999999998878999997511046004687117


No 78 
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=30.71  E-value=31  Score=15.05  Aligned_cols=81  Identities=19%  Similarity=0.224  Sum_probs=44.7

Q ss_pred             HHHHHHCCCCEEEEEECC--HHHHH-----------------HHHHHHCCCCCCCCCCC---------HHHCCC------
Q ss_conf             999985499539997064--26788-----------------88875322556763220---------011055------
Q gi|254780498|r   99 AIEAVKKNQAASVVTAGN--TGALI-----------------AMARLCLSRISGVDRPS---------LAAFWP------  144 (364)
Q Consensus        99 a~~lvk~g~aDa~VSaGn--TGA~l-----------------a~a~~~lg~i~Gv~RPa---------la~~~P------  144 (364)
                      .=++.+.|-.|+|++-||  |-=.+                 .++.|-||..+.-.||-         -|..+|      
T Consensus        15 ~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~PAViEA~   94 (566)
T COG1165          15 LEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYPAVIEAN   94 (566)
T ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHHHHH
T ss_conf             99999728867998989888588999985688079972164327778876655138987999767405641157877543


Q ss_pred             ---------CCCCCEEEEECCCC---------------------CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             ---------88984599861327---------------------778989999999999999998
Q gi|254780498|r  145 ---------TVKGKCIILDVGAT---------------------IGSTVSHMVQLSILGSFFARS  179 (364)
Q Consensus       145 ---------t~~g~~vllD~GAN---------------------~d~~~~~L~qfA~mGs~yak~  179 (364)
                               |.+.|-=|.+||||                     ++.+++.+-..+...+.+++.
T Consensus        95 ~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~  159 (566)
T COG1165          95 LSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ  159 (566)
T ss_pred             HCCCCEEEEECCCCHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             13884699828999788547985021232020256322104789988877899999999999874


No 79 
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=30.09  E-value=39  Score=14.40  Aligned_cols=16  Identities=6%  Similarity=0.048  Sum_probs=11.6

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             9986899999999999
Q gi|254780498|r  314 SSDAKSIFNVLGIAHN  329 (364)
Q Consensus       314 ~s~~~a~~~ai~~a~~  329 (364)
                      .-|+.+++.+|....+
T Consensus       328 ~~~~~~l~~~i~~l~~  343 (377)
T cd03798         328 PGDPEALAEAILRLLA  343 (377)
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             9999999999999987


No 80 
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=30.04  E-value=39  Score=14.40  Aligned_cols=105  Identities=17%  Similarity=0.082  Sum_probs=52.8

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HHCCCCCCCEEEECCCCCCCCC--CHHHHHHH
Q ss_conf             23999974687778177799999999857991799978989999998-6269751557997785201778--30679997
Q gi|254780498|r   12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPIL-DSHPLLKERSCFHHCEVSIAMD--ERPADALR   88 (364)
Q Consensus        12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l-~~~~~~~~ri~Ii~a~~vI~md--e~P~~AlR   88 (364)
                      |.||.+=+ ||--|---.-.+....|++ ++.+++++|++..++..+ ++.+   -.+..++....-...  ......++
T Consensus         1 mkkI~i~~-GGTGGHi~Palala~~L~~-~g~ev~~ig~~~g~E~~~v~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~   75 (359)
T PRK00726          1 MKKILLAG-GGTGGHVFPALALAEELKK-RGWEVLWLGTKRGMEARLVPKAG---IEFHFIPIGGLRRKGSLANLKAPFK   75 (359)
T ss_pred             CCEEEEEE-CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHCCCCC---CCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             98899995-8868999999999999983-87989999788268654044149---8389977788898787999999999


Q ss_pred             HCCCCHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHH
Q ss_conf             1376427999999985499539997064--26788888
Q gi|254780498|r   89 RGRNVSSMWRAIEAVKKNQAASVVTAGN--TGALIAMA  124 (364)
Q Consensus        89 ~kK~~SSm~~a~~lvk~g~aDa~VSaGn--TGA~la~a  124 (364)
                      -   --|++.+...+++-+-|.+|+.|.  |...+.+|
T Consensus        76 l---~~~~~~~~~il~~~kPd~Vig~GGY~s~P~~laA  110 (359)
T PRK00726         76 L---LKGVLQARKILKRFKPDVVVGFGGYVSGPAGLAA  110 (359)
T ss_pred             H---HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
T ss_conf             9---9999999999997499999978974128999999


No 81 
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=29.87  E-value=40  Score=14.38  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=8.9

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             984045555565799999999740
Q gi|254780498|r  190 LLNVGTEEIKGNDVLQESARLLRG  213 (364)
Q Consensus       190 LLNiG~E~~KG~~~~kea~~LL~~  213 (364)
                      |+.-||.....++...+-.+.+++
T Consensus         4 lv~HGSr~~~~~~~~~~l~~~l~~   27 (101)
T cd03416           4 LVGHGSRDPRAAEALEALAERLRE   27 (101)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             996799986899999999999997


No 82 
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=29.40  E-value=40  Score=14.33  Aligned_cols=94  Identities=11%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             CCEEEEECCCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf             8459986132777898-999999999999999856899965899840455555657999999997402457132002345
Q gi|254780498|r  148 GKCIILDVGATIGSTV-SHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE  226 (364)
Q Consensus       148 g~~vllD~GAN~d~~~-~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE  226 (364)
                      +..+++=+|=-..-|- +.|++      ++++. .. +.|.+-|+=+|.-+.+  +..++--+-+.  -...+.|.|++.
T Consensus       192 ~~~~il~vGRL~~~KG~d~Li~------A~~~l-~~-~~p~~~lvIvGdGp~~--~~L~~l~~~~~--l~~~V~flG~v~  259 (398)
T cd03796         192 DKITIVVISRLVYRKGIDLLVG------IIPEI-CK-KHPNVRFIIGGDGPKR--ILLEEMREKYN--LQDRVELLGAVP  259 (398)
T ss_pred             CCEEEEEECCCCCHHHHHHHHH------HHHHH-HH-HCCCEEEEEECCCCCH--HHHHHHHHHHC--CCCEEEECCCCC
T ss_conf             9869999706750300999999------99999-96-5899599993787118--99999998723--367289758885


Q ss_pred             HHHCC--CCCCCEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf             54532--456838997551278899998888999999
Q gi|254780498|r  227 ANDIA--KGFVDVIVTEGFSGNIAIKAAEGAVRHISG  261 (364)
Q Consensus       227 g~~i~--~g~~DVvV~DGFtGNi~LKt~EG~~~~~~~  261 (364)
                      ..|+.  -..+||+|.=..        .||..-.+.+
T Consensus       260 ~~~l~~~~~~aDvfv~PS~--------~Egfglv~lE  288 (398)
T cd03796         260 HERVRDVLVQGHIFLNTSL--------TEAFCIAIVE  288 (398)
T ss_pred             HHHHHHHHHHHHEEECCCC--------CCCCCHHHHH
T ss_conf             6777888877442127654--------2466679999


No 83 
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.02  E-value=41  Score=14.29  Aligned_cols=46  Identities=7%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEECCHHHHHHH
Q ss_conf             2399997468777817779999999985-----799179997898999999
Q gi|254780498|r   12 VDTISLDLMGGDLGARDLILGASKFLEA-----HPRIRFLMYGDAKVCLPI   57 (364)
Q Consensus        12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~-----~~~i~iiLvGdee~I~~~   57 (364)
                      |.+++|=.+.||..-+...-|..-|-..     ..++++++||+.++....
T Consensus         1 MaK~lViI~Sgk~~~eK~~~al~fA~ns~knk~~~dVelifFGpse~~la~   51 (113)
T COG3370           1 MAKVLVIISSGKENIEKALTALNFAYNSVKNKWFEDVELIFFGPSEKLLAK   51 (113)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHH
T ss_conf             972799997285058899999999999987523412689997725999982


No 84 
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263   Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.   This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=28.84  E-value=30  Score=15.11  Aligned_cols=52  Identities=27%  Similarity=0.232  Sum_probs=28.3

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC-------HHHCCCCC--CCEEEECCHHHHH
Q ss_conf             899840455555657999999997402457132002345-------54532456--8389975512788
Q gi|254780498|r  188 IGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE-------ANDIAKGF--VDVIVTEGFSGNI  247 (364)
Q Consensus       188 VgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE-------g~~i~~g~--~DVvV~DGFtGNi  247 (364)
                      +=|=||=+  -=|.++.-|+-..|-++.   -|++|==|       ..+|..-.  -|..|   |+||=
T Consensus       127 iiLYNvPs--RTg~~l~peTv~rLA~~~---~NI~aiKEa~g~l~~~~~i~~~~p~~dF~v---lsGDD  187 (288)
T TIGR00674       127 IILYNVPS--RTGVSLEPETVKRLAEEP---NNIVAIKEATGNLERISEIKAITPDDDFVV---LSGDD  187 (288)
T ss_pred             EEEECCCC--CCCCCCCHHHHHHHHCCC---CCEEEEEECCCCHHHHHHHHHHCCCCCEEE---EECCC
T ss_conf             89842876--410178628999973016---770688726888899999998668985388---84786


No 85 
>PTZ00188 adrenodoxin reductase; Provisional
Probab=28.83  E-value=35  Score=14.73  Aligned_cols=38  Identities=16%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             11389823999974687778177799999999857991799978
Q gi|254780498|r    6 VLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYG   49 (364)
Q Consensus         6 ~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvG   49 (364)
                      ..+.+|+.||||=  |  .||.-...+-  +|.+++++++-+|-
T Consensus        33 ~~~~~rPlRVAIV--G--SGPAGfYaA~--~Llk~~~v~VD~fE   70 (506)
T PTZ00188         33 LTNEAKPFKVGII--G--AGPSALYCCK--HLLKHERVKVDIFE   70 (506)
T ss_pred             CCCCCCCCEEEEE--C--CCCHHHHHHH--HHHCCCCCEEEEEE
T ss_conf             2478876579998--8--8838999999--99638997798882


No 86 
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of  galactose alpha-1,6 linkages in amylovoran.
Probab=28.66  E-value=42  Score=14.25  Aligned_cols=35  Identities=26%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             EEECCC-CCCCCCHHHHHHHHHHHHCCC-CCCCEECC
Q ss_conf             984045-555565799999999740245-71320023
Q gi|254780498|r  190 LLNVGT-EEIKGNDVLQESARLLRGECC-GAFKYKGF  224 (364)
Q Consensus       190 LLNiG~-E~~KG~~~~kea~~LL~~~~~-~~~nF~Gn  224 (364)
                      +|.+|- ++.||-+..-+|++.|++... -.+.++|.
T Consensus       181 il~vGRl~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~  217 (348)
T cd03820         181 ILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGD  217 (348)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             9999378632494999888898886489859999946


No 87 
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720   Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria .    This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=28.29  E-value=42  Score=14.21  Aligned_cols=195  Identities=17%  Similarity=0.233  Sum_probs=90.8

Q ss_pred             EECCCCCCCC-HHHHHHHHHHHHHCC--CCEEE--EECCHHHHHHHHHH-CC-------CCCCCEEEECCCC--CCCCCC
Q ss_conf             9746877781-777999999998579--91799--97898999999862-69-------7515579977852--017783
Q gi|254780498|r   17 LDLMGGDLGA-RDLILGASKFLEAHP--RIRFL--MYGDAKVCLPILDS-HP-------LLKERSCFHHCEV--SIAMDE   81 (364)
Q Consensus        17 VDaMGGD~~P-~~vi~Ga~~al~~~~--~i~ii--LvGdee~I~~~l~~-~~-------~~~~ri~Ii~a~~--vI~mde   81 (364)
                      |-|||=-++- +..++-.....++-|  |++|+  +||..++=-..+.+ ..       ..+=++..=|+..  =++...
T Consensus        65 lNAiGL~NPG~e~fl~E~~~~~~e~~t~dvr~I~svyG~~~EEfa~va~~~e~A~~y~~~~ELN~SCPhvK~G~G~~iG~  144 (308)
T TIGR01037        65 LNAIGLQNPGVEAFLEELKDVREEVPTHDVRLIASVYGESEEEFAEVAEKLEDADPYVDAYELNVSCPHVKGGGGIEIGQ  144 (308)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCC
T ss_conf             75235898217999986325664389875289998318882258999998721134400001047774434234655477


Q ss_pred             HHH------HHHHHCCC----------CHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHCCCCCCCCCCCHHHCCC
Q ss_conf             067------99971376----------42799999998549953999706426788-88875322556763220011055
Q gi|254780498|r   82 RPA------DALRRGRN----------VSSMWRAIEAVKKNQAASVVTAGNTGALI-AMARLCLSRISGVDRPSLAAFWP  144 (364)
Q Consensus        82 ~P~------~AlR~kK~----------~SSm~~a~~lvk~g~aDa~VSaGnTGA~l-a~a~~~lg~i~Gv~RPala~~~P  144 (364)
                      +|-      .++|.+-+          -+-+..=.+.+-+.=|||++ +=||  +. ....-+.     -.||=|+.-+-
T Consensus       145 dP~l~~~vv~avK~~~d~Pv~aKLsPNV~Di~eiA~a~eeaGaDGlt-~INT--l~PGMkIDI~-----~~kPiLaNk~G  216 (308)
T TIGR01037       145 DPELSADVVKAVKDKVDVPVFAKLSPNVTDITEIAKAAEEAGADGLT-LINT--LRPGMKIDIK-----AKKPILANKTG  216 (308)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE-EEHH--HHHHHHHHHH-----CCCCCCEECCC
T ss_conf             87799999999830007865786486566899998887532776164-0012--0346777342-----07870000458


Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf             88984599861327778989999999999999998568999658998404555556579999999974024571320023
Q gi|254780498|r  145 TVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGF  224 (364)
Q Consensus       145 t~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~Gn  224 (364)
                      ..+||-+.          |==+    +|=...+|. ++-.-|-||.==|        ..-+.|-+-|             
T Consensus       217 GlSGPAIK----------PiA~----r~VYdly~~-~ddriPIiGvGGi--------~~~eDA~Efl-------------  260 (308)
T TIGR01037       217 GLSGPAIK----------PIAV----RMVYDLYKE-VDDRIPIIGVGGI--------TSFEDALEFL-------------  260 (308)
T ss_pred             CCCCCCCC----------CEEE----EEHHHHHHH-HCCCCCEEEECCC--------CCHHHHHHHH-------------
T ss_conf             85075014----------2212----100004777-3782346863274--------5589999999-------------


Q ss_pred             CCHHHCCCCCCCEEEECC--HHH-HHHHHHHHHHHHHHHH
Q ss_conf             455453245683899755--127-8899998888999999
Q gi|254780498|r  225 IEANDIAKGFVDVIVTEG--FSG-NIAIKAAEGAVRHISG  261 (364)
Q Consensus       225 iEg~~i~~g~~DVvV~DG--FtG-Ni~LKt~EG~~~~~~~  261 (364)
                            +.|.-=|-|=-+  |.| .|..|-+||.-.|++.
T Consensus       261 ------~AGAsAVQvGtAvyy~g~~~f~~i~~~l~~fl~~  294 (308)
T TIGR01037       261 ------MAGASAVQVGTAVYYRGYKVFKKIIEGLIAFLKE  294 (308)
T ss_pred             ------HHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             ------8522022000222117752448887678899987


No 88 
>COG3933 Transcriptional antiterminator [Transcription]
Probab=28.16  E-value=43  Score=14.20  Aligned_cols=160  Identities=21%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             CCCEEEEEE-CCHHH-HHH-HHHHHCC--CCCCCCCCCHHH-------------CCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             995399970-64267-888-8875322--556763220011-------------05588984599861327778989999
Q gi|254780498|r  106 NQAASVVTA-GNTGA-LIA-MARLCLS--RISGVDRPSLAA-------------FWPTVKGKCIILDVGATIGSTVSHMV  167 (364)
Q Consensus       106 g~aDa~VSa-GnTGA-~la-~a~~~lg--~i~Gv~RPala~-------------~~Pt~~g~~vllD~GAN~d~~~~~L~  167 (364)
                      +++.+.|=| |++-| -|+ -+...||  -..+++=|-=.+             -.+..+|-.+|.|+|--         
T Consensus       107 ~~v~vIiiAHG~sTASSmaevanrLL~~~~~~aiDMPLdvsp~~vle~l~e~~k~~~~~~GlllLVDMGSL---------  177 (470)
T COG3933         107 PRVKVIIIAHGYSTASSMAEVANRLLGEEIFIAIDMPLDVSPSDVLEKLKEYLKERDYRSGLLLLVDMGSL---------  177 (470)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHH---------
T ss_conf             84369997258640788999999986325301346877678899999999999844756745999825308---------


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEE------EECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC-CHHHCCCCCCCEEEE
Q ss_conf             99999999999856899965899------84045555565799999999740245713200234-554532456838997
Q gi|254780498|r  168 QLSILGSFFARSVAGINCPSIGL------LNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFI-EANDIAKGFVDVIVT  240 (364)
Q Consensus       168 qfA~mGs~yak~~~~~~~PrVgL------LNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~Gni-Eg~~i~~g~~DVvV~  240 (364)
                        .-.|+..-+. +|++--.|-.      |+.|.+-.-|..+.+=+-.+.+       ||.++. -..+ .....-.+|+
T Consensus       178 --~~f~~~i~~~-~~ipv~~i~nVST~~vLea~rk~~l~~~le~I~~~i~~-------~~~~~~~~~~~-a~~~~kAlvt  246 (470)
T COG3933         178 --TSFGSIISEE-FGIPVKVIPNVSTSMVLEAGRKISLGLNLEQIYQSIQK-------DFPCYWCTPWP-AKNKKKALVT  246 (470)
T ss_pred             --HHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHH-------CCHHHHCCCCC-CCCCCCEEEE
T ss_conf             --7899999998-68964997054189999999998734589999999863-------13343054266-5667767999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHHHHHHHCC
Q ss_conf             55127889999888899999999986322208899-----99998999999997269
Q gi|254780498|r  241 EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRI-----GCLLIKKSLREVKEGFD  292 (364)
Q Consensus       241 DGFtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~-----~~~l~~~~l~~~~~~~d  292 (364)
                      --+||       ||+|.-+...+...........+     +..-....++++.+.+|
T Consensus       247 tC~TG-------~GtA~klk~~l~~~~~~~~d~~iv~~~~~~~~~~~~~~ql~~eye  296 (470)
T COG3933         247 TCITG-------EGTAEKLKKVLEEIIDTDLDIIIVACDYNKLASLERIEQLLEEYE  296 (470)
T ss_pred             EECCC-------CCHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             91258-------747999999987414410033145530147777889999997634


No 89 
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=27.92  E-value=43  Score=14.17  Aligned_cols=36  Identities=14%  Similarity=0.138  Sum_probs=21.8

Q ss_pred             HHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             99998549953999706426788888753225567632200
Q gi|254780498|r   99 AIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSL  139 (364)
Q Consensus        99 a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPal  139 (364)
                      -.+++++-+-|.+||..+..+   .+  .+++-.+..-|..
T Consensus        96 l~~li~~~kPDvII~T~P~~~---l~--~lk~~~~~~iP~~  131 (388)
T PRK13609         96 LKLLLQAEKPDIVINTFPIIA---VP--ELKKQTGISIPVY  131 (388)
T ss_pred             HHHHHHHCCCCEEEECCCHHH---HH--HHHHHCCCCCCEE
T ss_conf             999999829599998887899---99--9998459999889


No 90 
>PTZ00217 flap endonuclease-1; Provisional
Probab=27.81  E-value=43  Score=14.16  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=52.0

Q ss_pred             HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEEC---CCCCCCCHHHHHHHHHH-
Q ss_conf             99999985499539997064267888887532255676322001105588984599861---32777898999999999-
Q gi|254780498|r   97 WRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDV---GATIGSTVSHMVQLSIL-  172 (364)
Q Consensus        97 ~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~---GAN~d~~~~~L~qfA~m-  172 (364)
                      ..|+.|++.|.+||++| -.+-+++-++..+++.+..-.         +.+.+..-.++   =-..+-+.++|++|++| 
T Consensus       163 aqcA~L~~~g~vdav~S-eD~D~l~fG~p~vlr~l~~s~---------~~k~~~~~i~l~~il~~l~lt~eqfidlcIL~  232 (394)
T PTZ00217        163 AQCAELVKKGKAWAVAT-EDMDALTFGTPVLLRNLNFSE---------AKKRPIVEIHLDKVLKGLGLSMDQFIDLCILC  232 (394)
T ss_pred             HHHHHHHHCCCEEEEEE-CCCCCCCCCCCEEEEECCCCC---------CCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999996696579970-442300037866887313466---------66554499889998877499999999999981


Q ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999999856899965899840455555657999999997402
Q gi|254780498|r  173 GSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGE  214 (364)
Q Consensus       173 Gs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~  214 (364)
                      |+-|...+     |.||              .+.|++|++++
T Consensus       233 GcDY~~~I-----~GIG--------------pk~A~klIk~~  255 (394)
T PTZ00217        233 GCDYCDTI-----EGIG--------------PKTAYELIKKY  255 (394)
T ss_pred             CCCCCCCC-----CCCC--------------HHHHHHHHHHH
T ss_conf             86446899-----8748--------------89999999995


No 91 
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=27.71  E-value=43  Score=14.15  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             HHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHH
Q ss_conf             999985689996589984045555565799999999740245713200234554532456838997551278
Q gi|254780498|r  175 FFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGN  246 (364)
Q Consensus       175 ~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGN  246 (364)
                      +.||.+.... -+|-++.++ ++.+.++..+.+++++++..   +.+.-+.+-.+......|||| ||.-|-
T Consensus        46 v~Ar~L~~~g-~~V~v~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~iV-Dal~G~  111 (170)
T pfam03853        46 AAARHLAQRG-YKVTVLLLN-PDEKLSEDARRALEIAKKLG---GKIVSLNPDEDLSKALADLII-DALFGT  111 (170)
T ss_pred             HHHHHHHHCC-CCEEEEEEC-CCCCCCHHHHHHHHHHHHCC---CCEEECCCCCCCCCCCCCEEE-EEEEEC
T ss_conf             9999999879-907999967-85559999999999999869---967615863201256662899-743523


No 92 
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=25.78  E-value=10  Score=18.09  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             HHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             997269687087467421614898388998689999999999999607068999999999876752
Q gi|254780498|r  287 VKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLD  352 (364)
Q Consensus       287 ~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~~~~~~i~~~~~~~~~~~~~  352 (364)
                      ..+.+||+..      |.....++..-+|...++..-++...-...   .+++...+.+.++...+
T Consensus       304 tYE~i~Pe~V------G~~r~~vi~~~~sg~~~~~~~l~~~g~~~~---~~~~~~~~~~vk~l~~~  360 (409)
T COG0119         304 TYEPIDPEDV------GRRRRIVIGGKHSGRKAVKAKLEELGIELD---EEELDKLFSRVKELADK  360 (409)
T ss_pred             HCCCCCHHHC------CCEEEEEEECCCCCHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHH
T ss_conf             5178897892------974226762243445789999998288789---79999999999998763


No 93 
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=25.78  E-value=47  Score=13.93  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             CCCEEEEEECCHHH--HHHHHH--HHCCCC-CCCCCCCHHHCCCCCCCCEEEEECCCCCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf             99539997064267--888887--532255-6763220011055889845998613277789-89999999999999998
Q gi|254780498|r  106 NQAASVVTAGNTGA--LIAMAR--LCLSRI-SGVDRPSLAAFWPTVKGKCIILDVGATIGST-VSHMVQLSILGSFFARS  179 (364)
Q Consensus       106 g~aDa~VSaGnTGA--~la~a~--~~lg~i-~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~-~~~L~qfA~mGs~yak~  179 (364)
                      ..+|.+++....-.  +...+.  -.+-.+ .||+...+.+.-|.. ....++=+|-=.+-| .+.|++      ++++.
T Consensus       141 ~~a~~iI~vS~~~~~~l~~~G~~~~ki~vi~~GvD~~~f~~~~~~~-~~~~il~vGRl~~~KG~~~li~------A~~~l  213 (367)
T cd05844         141 RRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATPAR-RPPRILFVGRFVEKKGPLLLLE------AFARL  213 (367)
T ss_pred             HHCCEEEECCHHHHHHHHHCCCCHHHEEEECCCCCHHHCCCCCCCC-CCCEEEEEECCCCCCCHHHHHH------HHHHH
T ss_conf             7269999699999999998598978999977863676469998777-8968999935730007699999------99997


Q ss_pred             HCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCC--CCCCEEEE----------CCHHHHH
Q ss_conf             56899965899840455555657999999997402457132002345545324--56838997----------5512788
Q gi|254780498|r  180 VAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAK--GFVDVIVT----------EGFSGNI  247 (364)
Q Consensus       180 ~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~--g~~DVvV~----------DGFtGNi  247 (364)
                       .. +.|.+-|+=+|..+.+ .++.+.+.++ .-  ...+.|.|.+-..++..  ..+||+|.          +|| |++
T Consensus       214 -~~-~~p~~~l~ivG~Gp~~-~~l~~~~~~l-~l--~~~V~f~G~~~~~~v~~~l~~adv~v~PS~~~~~g~~Eg~-~~~  286 (367)
T cd05844         214 -AR-RVPEVRLVIIGDGPLL-AALEALARAL-GL--GGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGL-PVV  286 (367)
T ss_pred             -HH-HCCCEEEEEEECCCCH-HHHHHHHHHC-CC--CCCEEECCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCCC-CHH
T ss_conf             -96-6869799999888378-9999999970-98--7637877889818899999857879960020377885676-379


Q ss_pred             HH
Q ss_conf             99
Q gi|254780498|r  248 AI  249 (364)
Q Consensus       248 ~L  249 (364)
                      +|
T Consensus       287 ~l  288 (367)
T cd05844         287 LL  288 (367)
T ss_pred             HH
T ss_conf             99


No 94 
>TIGR01431 adm_rel adenosine deaminase-related growth factor; InterPro: IPR006331   Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, molluscs, and vertebrates ..
Probab=25.57  E-value=13  Score=17.41  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=22.7

Q ss_pred             CHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9687087467421614898388998689999999999
Q gi|254780498|r  292 DPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH  328 (364)
Q Consensus       292 d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~  328 (364)
                      |+|++.+|+|+-=|-|+|||   ||..|+-.|--+.+
T Consensus       397 D~RNHp~a~L~A~~yP~VIS---sDdPa~w~a~pLSy  430 (486)
T TIGR01431       397 DLRNHPVAILLADNYPMVIS---SDDPAFWGAKPLSY  430 (486)
T ss_pred             HHCCCCCHHHHHCCCCEEEE---CCCCCCCCCCCCCH
T ss_conf             32001015543268766874---68853345888728


No 95 
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366   This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=24.83  E-value=49  Score=13.82  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=12.0

Q ss_pred             HHHCCCCEEEEEECCHHHHHHHHHHHCC
Q ss_conf             9854995399970642678888875322
Q gi|254780498|r  102 AVKKNQAASVVTAGNTGALIAMARLCLS  129 (364)
Q Consensus       102 lvk~g~aDa~VSaGnTGA~la~a~~~lg  129 (364)
                      |.++|=.=-+| -|=|-|+=+++..-+.
T Consensus       102 L~~~GI~~Evv-PGvTsA~Aa~a~aGiP  128 (242)
T TIGR01469       102 LAEAGIPFEVV-PGVTSAIAAAAYAGIP  128 (242)
T ss_pred             HHHCCCCEEEE-CCCCHHHHHHHHCCCC
T ss_conf             99668979873-8811677899855899


No 96 
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=24.81  E-value=49  Score=13.81  Aligned_cols=60  Identities=15%  Similarity=0.281  Sum_probs=42.0

Q ss_pred             HHHHHHHCCHHHCCCEEEEEECCEEEEE-CCCCCHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHH
Q ss_conf             9999972696870874674216148983-8899868999999999-999960706899999999987
Q gi|254780498|r  284 LREVKEGFDPRNFNGGVLLGVDGLVVKG-HGSSDAKSIFNVLGIA-HNMSQNGFIDMVKDDMQRVRD  348 (364)
Q Consensus       284 l~~~~~~~d~~~~gGa~llGl~g~vik~-HG~s~~~a~~~ai~~a-~~~~~~~~~~~i~~~~~~~~~  348 (364)
                      ++.+++.     .+--+.+|.||-+-+. .-..+.....+||+.. .+....+|.++|++-|++.+.
T Consensus       166 i~~ik~~-----t~~~I~VG~NG~IWI~g~~~~~~~~a~~aI~~Ie~eah~~gLtd~i~~~l~~~~~  227 (232)
T PRK04163        166 INMLKEE-----TGCDIIVGQNGRIWIKGKNEEDEELAIEAIKKIEREAHTSGLTDRVKEFLEEEKG  227 (232)
T ss_pred             HHHHHHH-----HCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf             9997652-----1958999179789997698889999999999999863003589999999987434


No 97 
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=24.41  E-value=50  Score=13.77  Aligned_cols=143  Identities=14%  Similarity=0.016  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHCCCCC--CCEE------------EECCCCCCCCCC------HHHHH
Q ss_conf             77999999998579-917999789899999986269751--5579------------977852017783------06799
Q gi|254780498|r   28 DLILGASKFLEAHP-RIRFLMYGDAKVCLPILDSHPLLK--ERSC------------FHHCEVSIAMDE------RPADA   86 (364)
Q Consensus        28 ~vi~Ga~~al~~~~-~i~iiLvGdee~I~~~l~~~~~~~--~ri~------------Ii~a~~vI~mde------~P~~A   86 (364)
                      ..+.=.+.+....+ --++++--|-+.|....++++...  .|..            ++|+.+....++      .|+..
T Consensus        29 pLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsP  108 (228)
T COG1083          29 PLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRASTIDAALHALESFNIDEDTLILLQPTSP  108 (228)
T ss_pred             CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             15899999986588522699847958999999872761102487454167216789999999874424570688406850


Q ss_pred             HHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHH-----HHHHH------------HHHCCCCCCCCCCCHHHCCCCC---
Q ss_conf             971376427999999985499539997064267-----88888------------7532255676322001105588---
Q gi|254780498|r   87 LRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGA-----LIAMA------------RLCLSRISGVDRPSLAAFWPTV---  146 (364)
Q Consensus        87 lR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA-----~la~a------------~~~lg~i~Gv~RPala~~~Pt~---  146 (364)
                      ||+.   .-+-.|++...+++.|.++||----.     +....            ..--..+|...|+.-+-.+-+.   
T Consensus       109 Ll~~---~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l  185 (228)
T COG1083         109 LLTS---LHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDAL  185 (228)
T ss_pred             CCCH---HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHCCCEEEEHHHHH
T ss_conf             0014---5799999999658876358875322346888875078441011477655421105165653676797527987


Q ss_pred             ---------CCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             ---------984599861327778989999999999
Q gi|254780498|r  147 ---------KGKCIILDVGATIGSTVSHMVQLSILG  173 (364)
Q Consensus       147 ---------~g~~vllD~GAN~d~~~~~L~qfA~mG  173 (364)
                               +-.+..+|--...|-+.+.=+++|.+=
T Consensus       186 ~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l  221 (228)
T COG1083         186 LENDCFFIPNTILYEMPEDESIDIDTELDLEIAENL  221 (228)
T ss_pred             HHCCCEECCCCEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             415754158966898171200056608769999998


No 98 
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107   This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms .   Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium  and Gram-positive bacterium .   A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=23.98  E-value=36  Score=14.62  Aligned_cols=65  Identities=23%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH-HHHCCCCHHHHHHH---HHHHCCC---CEEEEEECCHHHHHH
Q ss_conf             9899999986269751557997785201778306799-97137642799999---9985499---539997064267888
Q gi|254780498|r   50 DAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADA-LRRGRNVSSMWRAI---EAVKKNQ---AASVVTAGNTGALIA  122 (364)
Q Consensus        50 dee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~A-lR~kK~~SSm~~a~---~lvk~g~---aDa~VSaGnTGA~la  122 (364)
                      .+++.++++... +         ..+.|++||-|.+| --..| +=||.=-+   ..+++.+   |=|+=|.||+-|.|-
T Consensus        61 me~EA~KLm~e~-~---------~KN~ID~dEYPqTar~i~~R-CVnM~a~LfhAp~~~D~~~~savGtsTiGSSEAiML  129 (493)
T TIGR01788        61 MEPEAEKLMDET-L---------NKNMIDKDEYPQTAREIENR-CVNMLADLFHAPALKDEEAASAVGTSTIGSSEAIML  129 (493)
T ss_pred             CCHHHHHHHHHC-C---------CCCCCCCCCCCHHHHHHHHC-CEEHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHH
T ss_conf             776789999725-5---------77701100165448988504-301234411478777877566435177325899998


Q ss_pred             HHH
Q ss_conf             887
Q gi|254780498|r  123 MAR  125 (364)
Q Consensus       123 ~a~  125 (364)
                      +++
T Consensus       130 GGl  132 (493)
T TIGR01788       130 GGL  132 (493)
T ss_pred             HHH
T ss_conf             777


No 99 
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein; InterPro: IPR014169   Members in this entry represent the peptidoglycan-associated lipoprotein (Pal or OprL) protein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The entry represents only the conserved C-terminal domain..
Probab=23.41  E-value=52  Score=13.65  Aligned_cols=46  Identities=11%  Similarity=0.232  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCH-----------------HHHHHHHHHCCCCCCCEEEEC
Q ss_conf             7779999999985799179997898-----------------999999862697515579977
Q gi|254780498|r   27 RDLILGASKFLEAHPRIRFLMYGDA-----------------KVCLPILDSHPLLKERSCFHH   72 (364)
Q Consensus        27 ~~vi~Ga~~al~~~~~i~iiLvGde-----------------e~I~~~l~~~~~~~~ri~Ii~   72 (364)
                      ..++..=..+|.++|++.++|=|+-                 +-++.+|...+...+++++|-
T Consensus        16 ~~~l~~hA~~L~~~p~~~V~iEGH~DERGTrEYNlALGeRRA~AV~~yL~~~GV~~~q~~~vS   78 (104)
T TIGR02802        16 QAILDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQAKGVSASQIETVS   78 (104)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             999999899998679937888630788888777777889999999999997389611004630


No 100
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=23.20  E-value=52  Score=13.62  Aligned_cols=76  Identities=21%  Similarity=0.214  Sum_probs=42.0

Q ss_pred             CCEEEEECCHHHHHHHHHHC---CCCC-CC-EEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             91799978989999998626---9751-55-7997785201778306799971376427999999985499539997064
Q gi|254780498|r   42 RIRFLMYGDAKVCLPILDSH---PLLK-ER-SCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGN  116 (364)
Q Consensus        42 ~i~iiLvGdee~I~~~l~~~---~~~~-~r-i~Ii~a~~vI~mde~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGn  116 (364)
                      .-.+++.||++++..+.+-.   .... +| ++...-  .  -+.+|....-+.=+.-|...|++=++.==++.|+--|.
T Consensus        17 ~~~vilpGdP~R~~~iA~lld~~~~va~~Ref~~~~g--~--~~g~~v~v~StGIGgPSaaIAvEEL~~lGa~tfiRVGT   92 (248)
T COG2820          17 ATLVILPGDPERVEKIAKLLDNPVLVASNREFRTYTG--T--YNGKPVTVCSTGIGGPSAAIAVEELARLGAKTFIRVGT   92 (248)
T ss_pred             CCEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEEE--E--ECCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             4428814987899999998526011131331588876--8--75818899834889710999999999658817999605


Q ss_pred             HHHHH
Q ss_conf             26788
Q gi|254780498|r  117 TGALI  121 (364)
Q Consensus       117 TGA~l  121 (364)
                      ||++-
T Consensus        93 ~Galq   97 (248)
T COG2820          93 TGALQ   97 (248)
T ss_pred             CCCCC
T ss_conf             65566


No 101
>pfam05984 Cytomega_UL20A Cytomegalovirus UL20A protein. This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein.
Probab=23.20  E-value=40  Score=14.34  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=16.9

Q ss_pred             CHHHCCCCCCCEEEECCHHHH
Q ss_conf             554532456838997551278
Q gi|254780498|r  226 EANDIAKGFVDVIVTEGFSGN  246 (364)
Q Consensus       226 Eg~~i~~g~~DVvV~DGFtGN  246 (364)
                      .+++=++|..||++|||=-++
T Consensus        60 D~~EdysgdYDVLItdgdGs~   80 (102)
T pfam05984        60 DDDEDYSGDYDVLITDGDGSE   80 (102)
T ss_pred             CCCCCCCCCCCEEEECCCCCC
T ss_conf             875123675347986588877


No 102
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.09  E-value=53  Score=13.61  Aligned_cols=57  Identities=18%  Similarity=0.141  Sum_probs=30.0

Q ss_pred             EEECCC-CCCCCCHHHHHHHHHHHHCCC-CCCCEECCCCHHHCCC------CCCCEEEECCHHHH
Q ss_conf             984045-555565799999999740245-7132002345545324------56838997551278
Q gi|254780498|r  190 LLNVGT-EEIKGNDVLQESARLLRGECC-GAFKYKGFIEANDIAK------GFVDVIVTEGFSGN  246 (364)
Q Consensus       190 LLNiG~-E~~KG~~~~kea~~LL~~~~~-~~~nF~GniEg~~i~~------g~~DVvV~DGFtGN  246 (364)
                      +|.+|. ++.||-+..-+|++.|.+... -.+.++|.-+-++-+.      +-.|-|.-=||+-|
T Consensus       191 il~vgRl~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~v~f~G~~~d  255 (360)
T cd04951         191 ILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDD  255 (360)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCHH
T ss_conf             99984066331157899999999864899799996782567888766776177761542475102


No 103
>PRK07409 threonine synthase; Validated
Probab=22.86  E-value=53  Score=13.58  Aligned_cols=40  Identities=30%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEE--EECCHHHHHHHHH
Q ss_conf             0679997137642799999998549953999--7064267888887
Q gi|254780498|r   82 RPADALRRGRNVSSMWRAIEAVKKNQAASVV--TAGNTGALIAMAR  125 (364)
Q Consensus        82 ~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~V--SaGnTGA~la~a~  125 (364)
                      .|.-+.| .|. +++  ++...++...+.+|  |+||||+-+++.-
T Consensus        56 nPTGSfK-DRg-a~~--~i~~a~~~g~~~vv~aSsGN~g~s~A~~a   97 (350)
T PRK07409         56 NPTGSFK-DRG-MTM--AVSKAKEEGAKAVICASTGNTSASAAAYA   97 (350)
T ss_pred             CCCCCHH-HHH-HHH--HHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf             9875969-999-999--99999974999899979658999999999


No 104
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=22.84  E-value=49  Score=13.78  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=17.3

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHH-CCCCEEEEECCH
Q ss_conf             82399997468777817779999999985-799179997898
Q gi|254780498|r   11 NVDTISLDLMGGDLGARDLILGASKFLEA-HPRIRFLMYGDA   51 (364)
Q Consensus        11 ~m~kIAVDaMGGD~~P~~vi~Ga~~al~~-~~~i~iiLvGde   51 (364)
                      -+.-+|+|.+--|.        |....++ .+.+.++=+|.+
T Consensus         4 P~LQvALD~~~l~~--------Al~ia~~~~~~vdiiEvGtp   37 (216)
T PRK13306          4 PLLQVALDNQDLDS--------ALEDAKKVAEEVDIIEVGTI   37 (216)
T ss_pred             CEEEEEECCCCHHH--------HHHHHHHHHCCCCEEEECCH
T ss_conf             73899867899999--------99999972322899996859


No 105
>PRK12404 stage V sporulation protein AD; Provisional
Probab=22.49  E-value=54  Score=13.53  Aligned_cols=57  Identities=16%  Similarity=0.143  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEE
Q ss_conf             799999998549953999706426788888753225567632200110558898459
Q gi|254780498|r   95 SMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCI  151 (364)
Q Consensus        95 Sm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~v  151 (364)
                      ||.+|..+|.-|-||-++.+-++----+--.|...+--|..||--+..--|-.|-++
T Consensus       115 ~L~laa~~vd~g~A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~i  171 (334)
T PRK12404        115 GLALGASIVNAKGAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAAI  171 (334)
T ss_pred             HHHHHHHHHHCCCHHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEEE
T ss_conf             999999998466543502320445203665425822116779986627887618999


No 106
>PRK00550 rpsE 30S ribosomal protein S5; Validated
Probab=21.93  E-value=56  Score=13.46  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=25.2

Q ss_pred             EEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             742161489838899868999999999999960
Q gi|254780498|r  301 LLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN  333 (364)
Q Consensus       301 llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~  333 (364)
                      +.|+.-+..|++|++++.-+..|...|....+.
T Consensus       112 laGI~d~~~K~~Gs~n~~NvvkA~~~aL~~~~t  144 (156)
T PRK00550        112 LAGVHDVLAKSLGSNNPINVVRATFDALKKLRT  144 (156)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             759160576716899788999999999981899


No 107
>PRK05638 threonine synthase; Validated
Probab=21.77  E-value=56  Score=13.44  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=22.3

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHH
Q ss_conf             067999713764279999999854995--3999706426788888753
Q gi|254780498|r   82 RPADALRRGRNVSSMWRAIEAVKKNQA--ASVVTAGNTGALIAMARLC  127 (364)
Q Consensus        82 ~P~~AlR~kK~~SSm~~a~~lvk~g~a--Da~VSaGnTGA~la~a~~~  127 (364)
                      .|+-..| .|. +  .+++...++--+  -++-|.||+|+-+|+---.
T Consensus        91 NPTGSFK-DRg-~--svavs~A~~~G~~~vv~aStGNagaS~AaYaA~  134 (443)
T PRK05638         91 NPTGSFR-DRL-A--TVAVSYGLPYASNGFVVASDGNAAASVAAYSAR  134 (443)
T ss_pred             CCCCCCH-HHH-H--HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             9975716-626-9--999999998098836870688889999999998


No 108
>KOG4411 consensus
Probab=21.74  E-value=55  Score=13.48  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=13.1

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             998613277789899999999999999
Q gi|254780498|r  151 IILDVGATIGSTVSHMVQLSILGSFFA  177 (364)
Q Consensus       151 vllD~GAN~d~~~~~L~qfA~mGs~ya  177 (364)
                      +.||+|+-+++.++|-+.  -+|.+|.
T Consensus       145 l~l~agg~~~~~AdhaAs--hlGkA~g  169 (292)
T KOG4411         145 LQLDAGGKVLPMADHAAS--HLGKAYG  169 (292)
T ss_pred             HHHHHCCCCCCCHHHHHH--HHHHHHH
T ss_conf             999724712563577898--8768889


No 109
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ:  LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate 
Probab=21.63  E-value=56  Score=13.42  Aligned_cols=29  Identities=17%  Similarity=0.150  Sum_probs=14.6

Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf             49953999706426788888753225567
Q gi|254780498|r  105 KNQAASVVTAGNTGALIAMARLCLSRISG  133 (364)
Q Consensus       105 ~g~aDa~VSaGnTGA~la~a~~~lg~i~G  133 (364)
                      ..+.+.+|+.-|-.+--.++.++.+++++
T Consensus       102 ~~~p~~yvg~Dn~~gg~~~a~~l~~~lg~  130 (280)
T cd06303         102 KHQPLLYVGFDHAAGARLLADYFIKRYPN  130 (280)
T ss_pred             CCCCCEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf             46875587076399999999999997599


No 110
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=21.27  E-value=57  Score=13.38  Aligned_cols=111  Identities=17%  Similarity=0.055  Sum_probs=50.2

Q ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCC--CCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96589984045555565799999999740245713200234554532--4568389975512788999988889999999
Q gi|254780498|r  185 CPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIA--KGFVDVIVTEGFSGNIAIKAAEGAVRHISGV  262 (364)
Q Consensus       185 ~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~--~g~~DVvV~DGFtGNi~LKt~EG~~~~~~~~  262 (364)
                      .|.+-|+=+|+.+..-.+..++..+-+.-  ..++.|.|++...++.  -..+||+|.=-.        .||....+...
T Consensus       232 ~~~~~l~ivG~g~~~~~~~~~~~~~~~~l--~~~V~f~G~~~~~~~~~~~~~adi~v~pS~--------~Egf~~~~lEA  301 (375)
T cd03821         232 FPDWHLVIAGPDEGGYRAELKQIAAALGL--EDRVTFTGMLYGEDKAAALADADLFVLPSH--------SENFGIVVAEA  301 (375)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHCCEECCCCH--------HHHHHHHHHHH
T ss_conf             79859999978982678999999998267--855853477683110989851500146847--------76645899999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             9986322208899999989999999972696870874674216148983889986899999999999
Q gi|254780498|r  263 LQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHN  329 (364)
Q Consensus       263 lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~  329 (364)
                      +-...              |.+        -...||..-+--++.....-  .+..+++.+|....+
T Consensus       302 ma~G~--------------PvI--------as~~gg~~eii~~~~g~~~~--~~~~~l~~~i~~l~~  344 (375)
T cd03821         302 LACGT--------------PVV--------TTDKVPWQELIEYGCGWVVD--DDVDALAAALRRALE  344 (375)
T ss_pred             HHCCC--------------CEE--------ECCCCCCHHEEECCCEEEEC--CCHHHHHHHHHHHHC
T ss_conf             98599--------------999--------92799807728788489949--299999999999976


No 111
>KOG0362 consensus
Probab=21.18  E-value=58  Score=13.36  Aligned_cols=67  Identities=21%  Similarity=0.290  Sum_probs=44.0

Q ss_pred             CCCEEEEEE----CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCH--HHCCCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             996589984----04555556579999999974024571320023455--453245683899755127889999888
Q gi|254780498|r  184 NCPSIGLLN----VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEA--NDIAKGFVDVIVTEGFSGNIAIKAAEG  254 (364)
Q Consensus       184 ~~PrVgLLN----iG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg--~~i~~g~~DVvV~DGFtGNi~LKt~EG  254 (364)
                      +.-||++-+    +-.-|.||+-+.+.|.+|+.=+...+ +   -+|.  .+|..-.++||||+|-+|.+.|-....
T Consensus       230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe-~---lle~~vk~Ia~~gvkViV~~g~v~em~Lhflnk  302 (537)
T KOG0362         230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEE-A---LLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNK  302 (537)
T ss_pred             CCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHCCCCH-H---HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCC
T ss_conf             133257874688755456764041058576664253648-8---999999999855980998557321666445435


No 112
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=21.05  E-value=58  Score=13.35  Aligned_cols=67  Identities=18%  Similarity=0.315  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECC-
Q ss_conf             9999999999999998568999658998404555556579999999974024571320023455453245683899755-
Q gi|254780498|r  164 SHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEG-  242 (364)
Q Consensus       164 ~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DG-  242 (364)
                      +.|.+|+..   .+ .++|-+--+|=.+|-|+      |.+-.|+||=|.-.     |    |-..|..+++.+|+|.| 
T Consensus        84 d~lg~~~~~---~t-~LfgGk~~~vL~mNTGa------EAvEtA~KLAR~Wg-----Y----~~K~ip~~kA~ii~~~GN  144 (426)
T TIGR01885        84 DVLGEFAKY---LT-KLFGGKYEKVLPMNTGA------EAVETALKLARKWG-----Y----EVKGIPRNKAKIIAASGN  144 (426)
T ss_pred             CHHHHHHHH---HH-HHCCCCCCEEECCCCCH------HHHHHHHHHHHHHC-----C----CCCCCCCCCEEEEEECCC
T ss_conf             035789999---99-75499510560456873------47999999999744-----1----357855762389985388


Q ss_pred             HHHHHHH
Q ss_conf             1278899
Q gi|254780498|r  243 FSGNIAI  249 (364)
Q Consensus       243 FtGNi~L  249 (364)
                      |.|-.+.
T Consensus       145 FhGRTlg  151 (426)
T TIGR01885       145 FHGRTLG  151 (426)
T ss_pred             CCCHHHH
T ss_conf             7330354


No 113
>pfam03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain.
Probab=20.94  E-value=58  Score=13.33  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             EEEECCEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             74216148983889986899999999999996
Q gi|254780498|r  301 LLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQ  332 (364)
Q Consensus       301 llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~  332 (364)
                      +.|++-+..|++|+.++.-+..|...|....+
T Consensus        33 ~aGikDi~sK~~Gs~n~~N~~kAt~~AL~~~~   64 (74)
T pfam03719        33 LAGIKDVLAKSLGSRNPINVVKATFDALKKLR   64 (74)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             83926403453788977889999999999079


No 114
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=20.37  E-value=60  Score=13.26  Aligned_cols=109  Identities=17%  Similarity=0.070  Sum_probs=57.6

Q ss_pred             CEEEEEEECCCCCCCCH--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf             82399997468777817--7799999999857991799978989999998626975155799778520177830679997
Q gi|254780498|r   11 NVDTISLDLMGGDLGAR--DLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALR   88 (364)
Q Consensus        11 ~m~kIAVDaMGGD~~P~--~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR   88 (364)
                      .|.||||=.-|||- |.  .+|.|....+... +.+++-+  .+=.+-++...-.   .+....-...+.+.=++.-.-|
T Consensus         1 ~~kkIaIlTSGGda-PGmNa~Iravvr~a~~~-g~eV~Gi--~~Gy~GL~~~~i~---~l~~~~v~~~~~~GGT~lgssr   73 (347)
T COG0205           1 MMKKIAILTSGGDA-PGMNAVIRAVVRTAIKE-GLEVFGI--YNGYLGLLEGDIK---PLTREDVDDLINRGGTFLGSAR   73 (347)
T ss_pred             CCCEEEEECCCCCC-CCHHHHHHHHHHHHHHC-CCEEEEE--ECCHHHHCCCCCE---ECCHHHHHHHHHCCCEEEEECC
T ss_conf             98369998468898-30769999999999976-9789999--4332342078612---1442014679865986875478


Q ss_pred             HCCC--CHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHH
Q ss_conf             1376--42799999998549953999706----42678888875
Q gi|254780498|r   89 RGRN--VSSMWRAIEAVKKNQAASVVTAG----NTGALIAMARL  126 (364)
Q Consensus        89 ~kK~--~SSm~~a~~lvk~g~aDa~VSaG----nTGA~la~a~~  126 (364)
                      ..+.  +.---++++-+++-..|++|-.|    +|||...+..+
T Consensus        74 ~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDGS~~gA~~Lae~~  117 (347)
T COG0205          74 FPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEG  117 (347)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf             88765677999999999983998899978887389999999735


No 115
>KOG0816 consensus
Probab=20.32  E-value=57  Score=13.40  Aligned_cols=25  Identities=4%  Similarity=0.097  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             1777999999998579917999789
Q gi|254780498|r   26 ARDLILGASKFLEAHPRIRFLMYGD   50 (364)
Q Consensus        26 P~~vi~Ga~~al~~~~~i~iiLvGd   50 (364)
                      -+.+++++-.++.++|.+.++=+-+
T Consensus        23 K~~i~~~ir~~vd~Y~~v~Vf~~~n   47 (223)
T KOG0816          23 KEAIVEEIREAVDKYPYVFVFEVPN   47 (223)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf             9878999999986287489997288


No 116
>KOG4667 consensus
Probab=20.19  E-value=60  Score=13.23  Aligned_cols=145  Identities=19%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCC--CCCEECCCCHHHCCC----------------------CCCCEEE
Q ss_conf             9965899840455555657999999997402457--132002345545324----------------------5683899
Q gi|254780498|r  184 NCPSIGLLNVGTEEIKGNDVLQESARLLRGECCG--AFKYKGFIEANDIAK----------------------GFVDVIV  239 (364)
Q Consensus       184 ~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~--~~nF~GniEg~~i~~----------------------g~~DVvV  239 (364)
                      ..-.+.+|--|..++|-...-+.-.+.|.+...+  .|+|-||=|..+-|.                      -.+|||+
T Consensus        31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr~v~vi~  110 (269)
T KOG4667          31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNRVVPVIL  110 (269)
T ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             88339999504544541589999999998637248999855787767740467663227789999998606766788998


Q ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHH------------------------CC
Q ss_conf             7551278899998888999999999---86322208899999989999999972------------------------69
Q gi|254780498|r  240 TEGFSGNIAIKAAEGAVRHISGVLQ---KSLNRTLLSRIGCLLIKKSLREVKEG------------------------FD  292 (364)
Q Consensus       240 ~DGFtGNi~LKt~EG~~~~~~~~lk---~~~~~~~~~~~~~~l~~~~l~~~~~~------------------------~d  292 (364)
                      .--=-||++|+-++-... +...+-   +..-+++.   .-.+-+..+++++++                        ++
T Consensus       111 gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I---~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLn  186 (269)
T KOG4667         111 GHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGI---NERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLN  186 (269)
T ss_pred             EECCCCHHHHHHHHHHCC-CHHEEECCCCCCHHCCH---HHHHCCCHHHHHHHCCCEECCCCCCCCCCEECHHHHHHHHH
T ss_conf             506752899998876058-02368745641201126---65513328999985884305765698672642788887872


Q ss_pred             HHHCCCEEEEEECCEEEEECCCCCHH-HHHHHHHHHHHHHH
Q ss_conf             68708746742161489838899868-99999999999996
Q gi|254780498|r  293 PRNFNGGVLLGVDGLVVKGHGSSDAK-SIFNVLGIAHNMSQ  332 (364)
Q Consensus       293 ~~~~gGa~llGl~g~vik~HG~s~~~-a~~~ai~~a~~~~~  332 (364)
                      .+-+-..+=+--.-.|.-+||+-|.. .+.+|=+.|..+-.
T Consensus       187 td~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n  227 (269)
T KOG4667         187 TDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN  227 (269)
T ss_pred             CHHHHHHCCCCCCCCEEEEECCCCCEEECHHHHHHHHHCCC
T ss_conf             30436634867667169984367836661547999985668


No 117
>KOG1205 consensus
Probab=20.10  E-value=61  Score=13.22  Aligned_cols=10  Identities=10%  Similarity=0.125  Sum_probs=7.9

Q ss_pred             HCCCCEEEEE
Q ss_conf             5499539997
Q gi|254780498|r  104 KKNQAASVVT  113 (364)
Q Consensus       104 k~g~aDa~VS  113 (364)
                      .-|.+|.+|.
T Consensus        88 ~fg~vDvLVN   97 (282)
T KOG1205          88 HFGRVDVLVN   97 (282)
T ss_pred             HCCCCCEEEE
T ss_conf             6588888984


Done!