HHsearch results for GI: 254780498 and protein with PDBid: 1yco_A
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, PTB, nysgxrc; 2.40A {Enterococcus faecalis V583}
Probab=100.00 E-value=0 Score=308.86 Aligned_cols=273 Identities=15% Similarity=0.126 Sum_probs=211.7
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHC
Q ss_conf 23999974687778177799999999857-99179997898999999862697515579977852017783067999713
Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAH-PRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRG 90 (364)
Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~-~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~k 90 (364)
|+||+| ++|+| ..+++++..++++. .+..|+++|+++.+. ..+.++|+|+++.
T Consensus 1 mitiav-a~g~d---~~il~aa~~a~~e~~~~~~li~~~~~~~i~--------~~~~~eii~~~~~-------------- 54 (279)
T 1yco_A 1 MITVSI-AGGSQ---PEILQLVKKALKEAEQPLQFIVFDTNENLD--------TENLWKYVHCSDE-------------- 54 (279)
T ss_dssp CEEEEE-ETCCS---HHHHHHHHHHHHHCCSCEEEEEEESSCCCC--------SSCCSEEEECSSH--------------
T ss_pred CEEEEE-ECCCC---HHHHHHHHHHHHCCCCCCEEEEECHHHCCC--------HHCCCEEECCCCC--------------
T ss_conf 949999-16999---899999999997699886699508043032--------1228969889981--------------
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC-CEEEEECCCCCCCCHHHHHH
Q ss_conf 7642799999998549953999706-426788888753225567632200110558898-45998613277789899999
Q gi|254780498|r 91 RNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMARLCLSRISGVDRPSLAAFWPTVKG-KCIILDVGATIGSTVSHMVQ 168 (364)
Q Consensus 91 K~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g-~~vllD~GAN~d~~~~~L~q 168 (364)
.+|++.|+++|++|++|+++|++ +|+++|..+.+.+++++++.||+.++.||++++ +++|+|+|+|++|+||+|+|
T Consensus 55 --~~~~~~a~~lv~~G~aD~lv~G~~~t~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~D~g~N~~p~~e~L~~ 132 (279)
T 1yco_A 55 --AAVAQEAVSLVATGQAQILLKGIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAMNIAPTQATLIE 132 (279)
T ss_dssp --HHHHHHHHHHHHSTTCSEEEECSSCHHHHHHHHTCTTTCCBCSSSCEEEEEEECSSSCEEEEECSSSCSSCCHHHHHH
T ss_pred --HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCHHHHHH
T ss_conf --899999999997699888998988839999999987268899866899999980499579997227872767999999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHH
Q ss_conf 99999999998568999658998404555556579999999974024571320023455453245683899755127889
Q gi|254780498|r 169 LSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIA 248 (364)
Q Consensus 169 fA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~ 248 (364)
||+||+.|+|. ++++.|+|++|+.+.|+.++.+..++++.+++.... .++.++.++.+......++++++.|.+|.+
T Consensus 133 ~a~~~~~~ak~-~g~~~~~v~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~ 209 (279)
T 1yco_A 133 IVENAKEVAQK-LGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFND--QQEATVFGPLSLDLATSEEAVAHKRYSGPI 209 (279)
T ss_dssp HHHHHHHHHHH-TTCSSCEEEEECSCSSCCTTCHHHHHHHHHHHHHSS--CSSCEEEEEECHHHHHCHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHCCCCHH
T ss_conf 99999999998-289999558885135778997079999999998654--354323563111221158888630689645
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99988889999999998632220889999998999999997269687087467421614898388998689999999999
Q gi|254780498|r 249 IKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH 328 (364)
Q Consensus 249 LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~ 328 (364)
.+..... ++..+ .....+.++.+.|+|.+||| +|||++++|+++||++++++++|+|.+|.
T Consensus 210 ~~~~~~~---------------i~p~l---~a~ni~~K~l~~l~~~~~Gg-~llG~~~pVi~~srs~s~~~i~n~i~lA~ 270 (279)
T 1yco_A 210 MGDADIL---------------VVPTI---DVGNCLYKSLTLFGHAKVGG-TIVGTKVPVVLTSRSDSTESKFHSLRFAM 270 (279)
T ss_dssp SSCCSEE---------------ECSSH---HHHHHHHHHHHHHSCCEEEE-EEESBSSCEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHHH---HHHHHHHHHHHHCCCCCEEE-EEECCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 4234566---------------55568---87789999999718984421-00158985798999999999999999999
Q ss_pred HHHHCC
Q ss_conf 999607
Q gi|254780498|r 329 NMSQNG 334 (364)
Q Consensus 329 ~~~~~~ 334 (364)
..|...
T Consensus 271 ~~v~~~ 276 (279)
T 1yco_A 271 RQVHHH 276 (279)
T ss_dssp HHHHCC
T ss_pred HHHHHH
T ss_conf 997642