Query gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62] Match_columns 364 No_of_seqs 153 out of 1524 Neff 5.7 Searched_HMMs 13730 Date Wed Jun 1 10:50:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780498.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vi1a_ c.77.1.4 (A:) Fatty ac 100.0 0 0 833.4 35.2 331 12-348 1-332 (334) 2 d1u7na_ c.77.1.4 (A:) Fatty ac 100.0 0 0 829.4 34.7 325 13-344 1-329 (329) 3 d1vmia_ c.77.1.5 (A:) Ethanola 100.0 3E-31 2.2E-35 214.1 24.2 277 7-328 15-326 (329) 4 d1xcoa_ c.77.1.5 (A:) Phosphot 100.0 3E-26 2.2E-30 182.6 24.4 278 7-329 12-321 (324) 5 d1r5ja_ c.77.1.5 (A:) Phosphot 100.0 2.7E-26 2E-30 182.8 21.8 283 6-332 12-327 (329) 6 d2af4c1 c.77.1.5 (C:2-333) Pho 99.9 4E-25 2.9E-29 175.5 23.4 278 10-333 13-329 (332) 7 d1ptma_ c.77.1.3 (A:) 4-hydrox 98.6 8.1E-06 5.9E-10 53.7 17.6 266 12-334 4-328 (329) 8 d1qgoa_ c.92.1.2 (A:) Cobalt c 69.4 2.7 0.0002 18.8 4.0 33 15-47 4-39 (257) 9 d1kzyc2 c.15.1.4 (C:1867-1972) 67.1 1.8 0.00013 20.0 2.6 27 226-252 42-69 (106) 10 d2pjua1 c.92.3.1 (A:11-196) Pr 55.2 4 0.00029 17.8 2.7 108 99-249 43-157 (186) 11 d2ja9a2 d.51.1.1 (A:152-236) R 51.9 4.5 0.00033 17.4 2.6 58 283-345 23-82 (85) 12 d1su7a_ e.26.1.2 (A:) Ni-conta 43.5 8.4 0.00062 15.7 8.1 86 157-242 196-328 (633) 13 d1wu2a3 c.57.1.2 (A:181-324) M 41.6 5.9 0.00043 16.7 1.8 12 107-118 70-81 (144) 14 d1je0a_ c.56.2.1 (A:) 5'-deoxy 34.1 10 0.00074 15.3 2.1 73 44-120 14-91 (234) 15 d1odka_ c.56.2.1 (A:) Purine n 33.4 9.3 0.00068 15.5 1.8 97 44-164 15-116 (234) 16 d1jqka_ e.26.1.2 (A:) Ni-conta 31.6 13 0.00095 14.6 7.2 86 157-242 176-309 (610) 17 d1gmla_ c.8.5.2 (A:) Thermosom 31.3 13 0.00096 14.5 4.7 65 182-251 22-93 (168) 18 d1q3qa2 c.8.5.2 (A:217-369) Th 30.4 14 0.00099 14.4 5.0 58 181-250 16-87 (153) 19 d1uz5a3 c.57.1.2 (A:181-328) M 29.4 11 0.00083 14.9 1.7 84 96-184 56-146 (148) 20 d2ftsa3 c.57.1.2 (A:499-653) G 29.0 10 0.00076 15.2 1.4 77 107-187 66-155 (155) 21 d1qe5a_ c.56.2.1 (A:) Purine n 28.6 15 0.0011 14.2 4.3 25 25-50 9-38 (266) 22 d2f9fa1 c.87.1.8 (A:2-167) Fir 25.2 17 0.0012 13.9 2.1 76 155-244 18-96 (166) 23 d2uube1 d.14.1.1 (E:74-154) Ri 23.3 18 0.0013 13.7 1.8 33 301-333 39-71 (81) 24 d2nn6g3 d.51.1.1 (G:195-274) R 22.4 8.6 0.00062 15.7 -0.0 44 283-331 22-66 (80) 25 d1assa_ c.8.5.2 (A:) Thermosom 22.1 14 0.0011 14.3 1.1 64 182-250 18-88 (152) No 1 >d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Bacillus subtilis [TaxId: 1423]} Probab=100.00 E-value=0 Score=833.41 Aligned_cols=331 Identities=33% Similarity=0.602 Sum_probs=321.6 Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCC Q ss_conf 23999974687778177799999999857991799978989999998626975155799778520177830679997137 Q gi|254780498|r 12 VDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGR 91 (364) Q Consensus 12 m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK 91 (364) .||||||+||||++|.++|+|+..|++++|+++|+||||+++|++++++. .++++|+||+++|+|+|+|+.|+|+|| T Consensus 1 sirIAvDaMGGD~~P~~~v~Ga~~al~~~~~~~i~LvG~~~~i~~~l~~~---~~~i~Ivha~~~I~m~d~p~~alr~kk 77 (334) T d1vi1a_ 1 SLRIAVDAMGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTT---SDRITVLHADEVIEPTDEPVRAVRRKK 77 (334) T ss_dssp CEEEEEESSCSSSTTHHHHHHHHHHHHHCTTEEEEEEECHHHHHTTCCSC---CTTEEEEECCBCCCTTSCHHHHHHHCT T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHC---CCCEEEECCCCCCCCCCCHHHHHHHCC T ss_conf 95999981487658288999999999878898699995899999998537---366499838873158862257888443 Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC-EEEEECCCCCCCCHHHHHHHH Q ss_conf 6427999999985499539997064267888887532255676322001105588984-599861327778989999999 Q gi|254780498|r 92 NVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGK-CIILDVGATIGSTVSHMVQLS 170 (364) Q Consensus 92 ~~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~-~vllD~GAN~d~~~~~L~qfA 170 (364) + ||||+|+++||+|++|++||||||||+|+.+++++||||||+||||+++|||.++. ++|||+|||+||+|++|+||| T Consensus 78 ~-SSm~~a~~lvk~g~ada~VSaGnTGAl~a~a~~~l~~i~gi~RPaia~~~Pt~~g~~~vllD~GAN~~~~~~~L~qFA 156 (334) T d1vi1a_ 78 N-SSMVLMAQEVAENRADACISAGNTGALMTAGLFIVGRIKGIDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYA 156 (334) T ss_dssp T-BHHHHHHHHHHTTSCSEEEECSCHHHHHHHHHHTTCBCTTCSSCEEECEECCSSSCCEEEECSSSCSSCCHHHHHHHH T ss_pred C-CHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCEEEECCCCCCCCCHHHHHHHH T ss_conf 3-159999998641455727853675455765876675312431003330177777876289717867678819999999 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH Q ss_conf 99999999856899965899840455555657999999997402457132002345545324568389975512788999 Q gi|254780498|r 171 ILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 (364) Q Consensus 171 ~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK 250 (364) +||++|+|.++++++|||||||||+|++||++++|+||+||++.. +|||+|||||+|||+|.+||||||||||||+|| T Consensus 157 ~mG~~ya~~~~~~~~P~VgLLNiG~E~~KG~~~~k~a~~lL~~~~--~~nf~GniEg~di~~g~~DVvV~DGFtGNv~LK 234 (334) T d1vi1a_ 157 IMGSVYSQQVRGVTSPRVGLLNVGTEDKKGNELTKQTFQILKETA--NINFIGNVEARDLLDDVADVVVTDGFTGNVTLK 234 (334) T ss_dssp HHHHHHHHHTSCCSSCEEEEEESSSSTTCSCHHHHHHHHHHHSCT--TSEEEEEEEGGGGGGTSCSEEECCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCEECCCCCEEEEEECCCHHHHHHH T ss_conf 999999998489754346764044556664378999998753137--844266522200247836899975600457877 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 98888999999999863222088999999899999999726968708746742161489838899868999999999999 Q gi|254780498|r 251 AAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNM 330 (364) Q Consensus 251 t~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~ 330 (364) |+||+++++.++||++++++++++++++++++.|+++++++||++|||||||||||+||||||+|+++||+|||++|.++ T Consensus 235 t~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~l~~~~d~~~~gGa~lLGlng~vik~HG~S~~~ai~nAI~~a~~~ 314 (334) T d1vi1a_ 235 TLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYSNYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQAREM 314 (334) T ss_dssp HHHHHHHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHCGGGSCCEEEETBSSCEEECCTTCCHHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHH T ss_conf 62115889999999876122266788887899999998757901039868971682189927999989999999999999 Q ss_pred HHCCHHHHHHHHHHHHHH Q ss_conf 960706899999999987 Q gi|254780498|r 331 SQNGFIDMVKDDMQRVRD 348 (364) Q Consensus 331 ~~~~~~~~i~~~~~~~~~ 348 (364) ++++++++|++++++.++ T Consensus 315 v~~~~~~~i~~~l~~~~~ 332 (334) T d1vi1a_ 315 VSQNVAALIQEEVKEEKT 332 (334) T ss_dssp HHTTHHHHHHHHTSHHHH T ss_pred HHHCHHHHHHHHHHHHCC T ss_conf 986889999999975203 No 2 >d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Enterococcus faecalis [TaxId: 1351]} Probab=100.00 E-value=0 Score=829.35 Aligned_cols=325 Identities=31% Similarity=0.558 Sum_probs=313.2 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCC Q ss_conf 39999746877781777999999998579917999789899999986269751557997785201778306799971376 Q gi|254780498|r 13 DTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRN 92 (364) Q Consensus 13 ~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~AlR~kK~ 92 (364) ||||||+||||++|+++|+|+..|++++|+++|+|||++++|++++.++ +|++|+||+++|+|+|+|+.|+|+||+ T Consensus 1 mrIAvDaMGGD~gP~~~v~Ga~~al~~~~d~~i~LvG~e~~i~~~l~~~----~~l~Ivha~~~I~mdd~P~~alR~kk~ 76 (329) T d1u7na_ 1 MKIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDE----KNITIIHTDEKIASDDEPVKAIRRKKT 76 (329) T ss_dssp CEEEEESSCSTTTTHHHHHHHHHHHHHCTTCEEEEEECHHHHHTTCSCC----TTEEEEECSCCCCTTCCHHHHHHHCTT T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCC----CCEEEEECCCCCCCCCCHHHHHHHCCC T ss_conf 9899981587658088999999999878897799993999999875325----780899689863689877789874234 Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC---CCEEEEECCCCCCCCHHHHHHH Q ss_conf 4279999999854995399970642678888875322556763220011055889---8459986132777898999999 Q gi|254780498|r 93 VSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVK---GKCIILDVGATIGSTVSHMVQL 169 (364) Q Consensus 93 ~SSm~~a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~---g~~vllD~GAN~d~~~~~L~qf 169 (364) ||||+|+++||+|++||+||||||||+|++++++|||+|||+||||++.|||.+ ++++|||+|||+||+|++|+|| T Consensus 77 -SSm~~a~~lvk~g~ada~VSaGnTGAl~a~a~~~l~~i~gv~RPaia~~~Pt~~~~~~~~~llD~GAN~~~~~~~L~qF 155 (329) T d1u7na_ 77 -ASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKNVERPGLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQY 155 (329) T ss_dssp -SHHHHHHHHHHHTSCSEEEESSCHHHHHHHHHHTTCBCTTCSSCEEEEEEECTTCTTCEEEEECSSSCSCCCHHHHHHH T ss_pred -CHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEHHCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCHHHHHHH T ss_conf -2488999998743355675437875257652001134256431024575566678888559996787877798999999 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHH Q ss_conf 99999999985689996589984045555565799999999740245713200234554532456838997551278899 Q gi|254780498|r 170 SILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAI 249 (364) Q Consensus 170 A~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~L 249 (364) |+||++|+|.++++++|||||||||+|++||++++|+||+||+++. .+||+|||||+|||+|++||||||||||||+| T Consensus 156 A~mG~~ya~~v~~~~~P~VgLLNiG~E~~KG~~~~k~a~~lL~~~~--~~nf~GnvEg~di~~g~~DVvV~DGFtGNi~L 233 (329) T d1u7na_ 156 AVLGSFYAEKVRNVQNPRVGLLNNGTEETKGSELTKKAFELLAADE--TINFVGNVEARELLNGVADVVVTDGFTGNAVL 233 (329) T ss_dssp HHHHHHHHHHTTCCSSCCEEEECSCC----CCHHHHHHHHHHHHCT--TSCEEEEECGGGGGGCSCSEEECCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCEEEECCHHHHHHH T ss_conf 9998889998389854347663242321024699999999863135--86504662376355886658997441124999 Q ss_pred HHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 998888999999999863-2220889999998999999997269687087467421614898388998689999999999 Q gi|254780498|r 250 KAAEGAVRHISGVLQKSL-NRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH 328 (364) Q Consensus 250 Kt~EG~~~~~~~~lk~~~-~~~~~~~~~~~l~~~~l~~~~~~~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~ 328 (364) ||+||+++++++.||+++ .+++.++++++++++.|++++++|||++|||||||||||+|||+||+|+++||+|||++|. T Consensus 234 Kt~EG~~~~i~~~lk~~~~~~~~~~~~g~ll~~~~l~~~~~~~d~~~~gGa~lLGl~g~vik~HG~S~~~a~~nAI~~a~ 313 (329) T d1u7na_ 234 KSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALHGMKDEMDYSKHGGAVLFGLKAPVIKTHGATGPDAVRYTIRQIH 313 (329) T ss_dssp HHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHTCGGGGCCEEEETBSSCEEECCTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHHHHH T ss_conf 98767999999999998720225667789999999999987689000798889748831898378999899999999999 Q ss_pred HHHHCCHHHHHHHHHH Q ss_conf 9996070689999999 Q gi|254780498|r 329 NMSQNGFIDMVKDDMQ 344 (364) Q Consensus 329 ~~~~~~~~~~i~~~~~ 344 (364) ++++++++++|++.++ T Consensus 314 ~~~~~~~~~~i~~~~e 329 (329) T d1u7na_ 314 TMLETQVVPQLVEYYE 329 (329) T ss_dssp HHHHTTHHHHHHHHHC T ss_pred HHHHHCHHHHHHHHHC T ss_conf 9998586999999729 No 3 >d1vmia_ c.77.1.5 (A:) Ethanolamine utilization protein EutD {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=3e-31 Score=214.13 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=215.8 Q ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH Q ss_conf 13898239999746877781777999999998579917999789899999986269751557997785201778306799 Q gi|254780498|r 7 LQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADA 86 (364) Q Consensus 7 ~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~A 86 (364) +...+..||.+ +=|- -+.+++++..+.++. -.+.+|+|++++|+..++++++..+.++|+|+.+...+.+..... T Consensus 15 ~a~~~pkrIvf-~Ege---d~rvl~Aa~~~~~eg-i~~pILvG~~~~I~~~~~~~~l~l~~ieIIdp~~~~~~~~~~~~~ 89 (329) T d1vmia_ 15 LALRAPARVVF-PDAL---DQRVLKAAQYLHQQG-LATPILVANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHR 89 (329) T ss_dssp GGGSCCCEEEE-SCCS---SHHHHHHHHHHHHTT-SCEEEEESCHHHHHHHHHHHTCCCTTCEEECTTSCHHHHHHHHHH T ss_pred HHHHCCCEEEE-CCCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHH T ss_conf 98757998997-5879---989999999999879-968999858999999999769997777898566667778999999 Q ss_pred H-------------HHCCCCHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHHCCCCCCCCCCCHHHCC-CC-CCCC Q ss_conf 9-------------713764279999999854995399970--64267888887532255676322001105-58-8984 Q gi|254780498|r 87 L-------------RRGRNVSSMWRAIEAVKKNQAASVVTA--GNTGALIAMARLCLSRISGVDRPSLAAFW-PT-VKGK 149 (364) Q Consensus 87 l-------------R~kK~~SSm~~a~~lvk~g~aDa~VSa--GnTGA~la~a~~~lg~i~Gv~RPala~~~-Pt-~~g~ 149 (364) + +..+ .+.+.|++||+.|+||++|+. ++|..++..+..++|+.+|..+.+...++ |. .++. T Consensus 90 ~~~r~~~~~~~~a~~~~~--d~~~~Aa~mv~~G~aD~lv~G~~~~~~~~l~~~~~iig~~~~~~~~s~~~~m~~~~~~~~ 167 (329) T d1vmia_ 90 WLARAGEKTPPDALEKLT--DPLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGPA 167 (329) T ss_dssp HHHHHGGGCCTTHHHHTT--SHHHHHHHHHHTTSCSEEEECSSSCHHHHHHHHHHHTCBCTTCCCCEEEEEEEESSSCCC T ss_pred HHHHHCCCCHHHHHHHHH--CCCEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCE T ss_conf 999847888999999861--363786665505752178526757789998777740587764210002578741678716 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCC Q ss_conf 5998613277789899999999999999985689996589984---0455555657999999997402457132002345 Q gi|254780498|r 150 CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIE 226 (364) Q Consensus 150 ~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniE 226 (364) .++.||+.|++|++++|+++|++.+.+++.+++.+ |||++|+ .|+..+..+..+++|.+++++.. +++.+-|... T Consensus 168 lf~~D~~vn~~P~~eqla~Ia~~aa~~a~~l~g~~-PkVAlLS~S~~gs~~~~s~~~~~~a~~~~~~~~-~~~~vdGemq 245 (329) T d1vmia_ 168 LGFADCSVVPQPTAAQLADIALASAETWRAITGEE-PRVAMLSFSSNGSARHPCVANVQQATEIVRERA-PKLVVDGELQ 245 (329) T ss_dssp EEEESSSSCSSCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHC-TTSEEEEEEC T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCEEECCCC T ss_conf 99831577657789999999985899999857743-332246540467776334799999999998238-9967965620 Q ss_pred HH--------------HCCCCCCCEEEE-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 54--------------532456838997-551278899998888999999999863222088999999899999999726 Q gi|254780498|r 227 AN--------------DIAKGFVDVIVT-EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGF 291 (364) Q Consensus 227 g~--------------~i~~g~~DVvV~-DGFtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~ 291 (364) .+ .-+.|.+||+|. |--+|||..|.++-++. T Consensus 246 ~D~Al~~~~~~~k~~~s~~~G~AnvLI~Pnl~agNi~yK~l~~~~~---------------------------------- 291 (329) T d1vmia_ 246 FDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKIAQRLGG---------------------------------- 291 (329) T ss_dssp HHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHHC---------------------------------- T ss_pred HHHHHCHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC---------------------------------- T ss_conf 5443077666245899986897998994885887999999999539---------------------------------- Q ss_pred CHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 9687087467421614898388998689999999999 Q gi|254780498|r 292 DPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAH 328 (364) Q Consensus 292 d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~ 328 (364) +. .-|.+|+|+++||+..+.++++..+.|.+-.|. T Consensus 292 -a~-~iGpil~G~~~Pv~~~sr~~s~~~i~n~~aiaa 326 (329) T d1vmia_ 292 -YR-AVGPLIQGLAAPMHDLSRGCSVQEIIELALVAA 326 (329) T ss_dssp -EE-EEEEEEESBSSCEEECCTTCCHHHHHHHHHHHH T ss_pred -CE-EECHHHHCCCCCEEECCCCCCHHHHHHHHHHHC T ss_conf -82-884344367998797899999999999988741 No 4 >d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis [TaxId: 1423]} Probab=99.96 E-value=3e-26 Score=182.59 Aligned_cols=278 Identities=17% Similarity=0.206 Sum_probs=214.3 Q ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH Q ss_conf 13898239999746877781777999999998579917999789899999986269751557997785201778306799 Q gi|254780498|r 7 LQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADA 86 (364) Q Consensus 7 ~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~~A 86 (364) +-.++..||.+ +=|- -+.+++++..+.++. -.+.+|+|++++|+..+++.+++.+.++|+++...-.. +..... T Consensus 12 kak~~~krIV~-~Ege---D~rvL~Aa~~~~~~g-i~~pILiG~~~~I~~~a~~~gl~l~~ieIidp~~~~~~-~~~~~~ 85 (324) T d1xcoa_ 12 KVAGKDVKIVF-PEGL---DERILEAVSKLAGNK-VLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGM-EDLVQA 85 (324) T ss_dssp HHTTSCCEEEE-SCTT---CHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHTTTBCCTTCEEECTTTCTTH-HHHHHH T ss_pred HHHCCCCEEEE-ECCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCCHHH-HHHHHH T ss_conf 98539998997-0879---989999999999869-86899987999999999986998555577788851667-999999 Q ss_pred ---HHHCCCC---------HHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEE Q ss_conf ---9713764---------2799999998549953999706--4267888887532255676322001105588984599 Q gi|254780498|r 87 ---LRRGRNV---------SSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCII 152 (364) Q Consensus 87 ---lR~kK~~---------SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vl 152 (364) .|+++.. ...+.|..||+.|++|++++.. +|..++.....++|..+|+.+.+-...+|+.++..++ T Consensus 86 ~~~~rk~~~~~~~a~~~~~~~~~~a~~mv~~G~aD~lv~G~~~~~~~~l~~~l~~ig~~~g~~~~s~~~~~~~~~~~l~~ 165 (324) T d1xcoa_ 86 FVERRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFIMARGEEQYVF 165 (324) T ss_dssp HHHHTTTSSCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCHHHHHHHHHHTSCBCTTCCCCEEEEEEEETTEEEEE T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCHHHCEEEEEECCCCCCCCCCCCEEEECCCCCCEEE T ss_conf 88775167719999987210478989998615301135512203422310467640588985334433333058872799 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHH Q ss_conf 86132777898999999999999999856899965899840---455555657999999997402457132002345545 Q gi|254780498|r 153 LDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKGFIEAND 229 (364) Q Consensus 153 lD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~ 229 (364) .||+.|++|++++|+++|+.....+| .+|++ |||++|+. |+..+.-+...+++.+++++.. +++.|-|..-.+- T Consensus 166 tD~~vn~~P~~e~la~Ia~~aa~~ar-~lg~e-PkVA~LS~s~~gs~~~~~~~~~~~a~~~~~~~~-~~~~vdG~lq~D~ 242 (324) T d1xcoa_ 166 ADCAINIAPDSQDLAEIAIESANTAK-MFDIE-PRVAMLSFSTKGSAKSDETEKVADAVKIAKEKA-PELTLDGEFQFDA 242 (324) T ss_dssp ECSSSCSSCCHHHHHHHHHHHHHHHH-HTTCC-CCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHC-TTSCEEEEECHHH T ss_pred ECCEEEECCCHHHHHHHHHHHHHHHH-HHCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEECCCCCHHH T ss_conf 78730778899999999999999998-73435-540002115677988730157899999986408-8731326630542 Q ss_pred --------------CCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf --------------32456838997551-278899998888999999999863222088999999899999999726968 Q gi|254780498|r 230 --------------IAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPR 294 (364) Q Consensus 230 --------------i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d~~ 294 (364) -+.|.+||+|.-.. +|||..|...- +-.- T Consensus 243 Al~~~~a~~k~~~s~v~G~AnvlI~P~l~agNi~yK~l~~------------------------------------~~~a 286 (324) T d1xcoa_ 243 AFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQR------------------------------------LGNF 286 (324) T ss_dssp HHCHHHHHHHCCSSSCSSCCSEEECSSHHHHHHHHHHHHH------------------------------------TTTC T ss_pred CCCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH------------------------------------HCCC T ss_conf 0287666311777656787998994880786999999998------------------------------------4498 Q ss_pred HCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 70874674216148983889986899999999999 Q gi|254780498|r 295 NFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHN 329 (364) Q Consensus 295 ~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~ 329 (364) ..-|.+|.|++.||+....++++..+.|.+-.|.- T Consensus 287 ~~~Gpil~G~~~Pv~~~sr~~s~~~i~n~~aia~~ 321 (324) T d1xcoa_ 287 EAVGPILQGLNMPVNDLSRGCNAEDVYNLALITAA 321 (324) T ss_dssp EEEEEEEESBSSCEEECCTTCCHHHHHHHHHHHHH T ss_pred EEECCHHHCCCCCEEECCCCCCHHHHHHHHHHHHH T ss_conf 38760644679987978999998999999999999 No 5 >d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus pyogenes [TaxId: 1314]} Probab=99.95 E-value=2.7e-26 Score=182.83 Aligned_cols=283 Identities=17% Similarity=0.223 Sum_probs=214.3 Q ss_pred CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCH--H Q ss_conf 11389823999974687778177799999999857991799978989999998626975155799778520177830--6 Q gi|254780498|r 6 VLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDER--P 83 (364) Q Consensus 6 ~~~~~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~--P 83 (364) -+-.++..||.+ +-|-| +.+++++..+.++. -.+.+|+|++++|+..+++.++..+.++|+|+.+....++- . T Consensus 12 ~k~~~~~krIvf-aEgeD---~rvl~Aa~~~~~~g-i~~pILvG~~~~I~~~~~~~gl~~~~ieIid~~~~~~~~~~~~~ 86 (329) T d1r5ja_ 12 EKILGKNMKIVF-PEGND---ERVVRAAARLKFEG-LLEPIILGQSEEVRNLLTKLGFADQDYTIINPNEYADFDKMKEA 86 (329) T ss_dssp HHHTTSCCEEEE-SCSSC---HHHHHHHHHHHTTT-SCEEEEBSCHHHHHHHHHHTTCCCSSCCCBCSSSCTTHHHHHHH T ss_pred HHHHHCCCEEEE-CCCCC---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHH T ss_conf 998538998997-18899---89999999999879-86899977999999999976999546555466767889999999 Q ss_pred HHHHHHCCCC---------HHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHC--CCCCCCCE Q ss_conf 7999713764---------2799999998549953999706--426788888753225567632200110--55889845 Q gi|254780498|r 84 ADALRRGRNV---------SSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAF--WPTVKGKC 150 (364) Q Consensus 84 ~~AlR~kK~~---------SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~--~Pt~~g~~ 150 (364) ...+|+++.. ...+.|++||+.|++|++|+.. +|..++...+.++++.||..+.+...+ +|+.++.. T Consensus 87 ~~~~rk~~~~~~~a~~~~~d~~~~a~~mv~~G~aD~~v~G~~~~t~~~lr~~l~~i~~~~~~~~~s~~~~~~~~~~~~~l 166 (329) T d1r5ja_ 87 FVEVRKGKATLEDADKMLRDVNYFGVMLVKMGLADGMVSGAIHSTADTVRPALQIIKTKPGISRTSGVFLMNRENTSERY 166 (329) T ss_dssp HHHHHTTTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECSSSCSHHHHHHHHHSSCBCTTCSSCEEEEEEEEGGGTEEE T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHEEECCCCCCCCCCHHEEEEECCCCCCEE T ss_conf 99987278729999999751678899999759741254130001577533310003576532110002444124666438 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCH Q ss_conf 9986132777898999999999999999856899965899840---4555556579999999974024571320023455 Q gi|254780498|r 151 IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNV---GTEEIKGNDVLQESARLLRGECCGAFKYKGFIEA 227 (364) Q Consensus 151 vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNi---G~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg 227 (364) ++.||+.|++|++++|+++|+.....+| .+|++ |||++|+. |+..+--.+.+++|.+++++. .+++.+-|-.-. T Consensus 167 ~~tD~avn~~P~~eqla~Ia~~aa~~ar-~lg~e-PkVAlLS~S~~gs~~~~s~~~~~~a~~~~~~~-~~~~~vdGelq~ 243 (329) T d1r5ja_ 167 VFADCAINIDPTAQELAEIAVNTAETAK-IFDID-PKIAMLSFSTKGSGKAPQVDKVREATEIATGL-NPDLALDGELQF 243 (329) T ss_dssp EESCSSSCSSCCHHHHHHHHHHHHHHHH-HTTCC-CCEEEECSCSTTSSCSHHHHHHHHHHHHHHHH-CTTSCEEEEECH T ss_pred EEECCEEECCCCHHHHHHHHHHHHHHHH-HHCCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCCHH T ss_conf 9723521148888999999999999998-61756-62576520567896420178999999999976-889543653117 Q ss_pred H--------------HCCCCCCCEEEECCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 4--------------532456838997551-2788999988889999999998632220889999998999999997269 Q gi|254780498|r 228 N--------------DIAKGFVDVIVTEGF-SGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFD 292 (364) Q Consensus 228 ~--------------~i~~g~~DVvV~DGF-tGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~~d 292 (364) + .-+.|.+||+|.-.. +|||.-|...- +. T Consensus 244 D~Al~~~~a~~K~~~s~v~G~AnvLIfPnl~agNi~yK~l~~------------------------------------l~ 287 (329) T d1r5ja_ 244 DAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIAQR------------------------------------LG 287 (329) T ss_dssp HHHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHHHH------------------------------------TT T ss_pred HHHHCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH------------------------------------HC T ss_conf 776466655321788765788998990884787999999998------------------------------------34 Q ss_pred HHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 6870874674216148983889986899999999999996 Q gi|254780498|r 293 PRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQ 332 (364) Q Consensus 293 ~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~ 332 (364) --..-|.+|+|++.||+...-++++..+.|.+-.+.-.++ T Consensus 288 ~~~~iGpil~G~~~Pv~~~sr~~s~~di~~~~aiaa~~A~ 327 (329) T d1r5ja_ 288 MFDAIGPILQGLNKPVNDLSRGSSAEDIYKLAIITAAQAI 327 (329) T ss_dssp CCEEEEEEEESBSSCEEECCTTCCHHHHHHHHHHHHHHHH T ss_pred CCEEECCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 9808740544789987978999998999999999999985 No 6 >d2af4c1 c.77.1.5 (C:2-333) Phosphotransacetylase Pta {Methanosarcina thermophila [TaxId: 2210]} Probab=99.95 E-value=4e-25 Score=175.48 Aligned_cols=278 Identities=15% Similarity=0.171 Sum_probs=206.1 Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHH---HH Q ss_conf 982399997468777817779999999985799179997898999999862697515579977852017783067---99 Q gi|254780498|r 10 GNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPA---DA 86 (364) Q Consensus 10 ~~m~kIAVDaMGGD~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~mde~P~---~A 86 (364) ++..||.+ +=|- -+.+++++..+.++. -.+.+|+|++++|+..+++.++ +.++|+++.+.-.. +... .. T Consensus 13 ~~~krIvf-~Eg~---D~rvL~Aa~~~~~~g-i~~pILiG~~~~I~~~~~~l~l--~~~~iIdp~~~~~~-~~y~~~~~~ 84 (332) T d2af4c1 13 KLNKTIAL-PETE---DIRTLQAAAKILERG-IADIVLVGNEADIKALAGDLDL--SKAKIVDPKTYEKK-DEYINAFYE 84 (332) T ss_dssp HHCCEEEE-CCTT---SHHHHHHHHHHHHHT-SCEEEEESCHHHHHHHHSSCCC--TTSEEECTTSCTTH-HHHHHHHHH T ss_pred HCCCEEEE-CCCC---CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCC--CCCEEECCCCCCHH-HHHHHHHHH T ss_conf 48998998-6879---989999999999869-9069998799999999985899--86768787421026-789999999 Q ss_pred HHHCCC----------CHHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHHHCCCCCCCCCCCHHHCC--CC----CCC Q ss_conf 971376----------42799999998549953999706--4267888887532255676322001105--58----898 Q gi|254780498|r 87 LRRGRN----------VSSMWRAIEAVKKNQAASVVTAG--NTGALIAMARLCLSRISGVDRPSLAAFW--PT----VKG 148 (364) Q Consensus 87 lR~kK~----------~SSm~~a~~lvk~g~aDa~VSaG--nTGA~la~a~~~lg~i~Gv~RPala~~~--Pt----~~g 148 (364) +|++|+ ....+.|++||+.|++|++|+.. +|..++..++.++|+.+|..+.+...+| |+ .++ T Consensus 85 ~r~~KG~~~~~A~~~~~~~~~~a~~mV~~G~aD~lv~G~~~~t~~~lr~~l~~ig~~~~~~~~s~~~i~~~p~~~~~~~~ 164 (332) T d2af4c1 85 LRKHKGITLENAAEIMSDYVYFAVMMAKLGEVDGVVSGAAHSSSDTLRPAVQIVKTAKGAALASAFFIISVPDCEYGSDG 164 (332) T ss_dssp HHGGGTCCHHHHHHHTTSHHHHHHHHHHTTSCSEEEECTTSCSHHHHHHHHHHTCBSTTCSCCEEEEEEECTTCCSTBTT T ss_pred HHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHEEECCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCCCC T ss_conf 87445999999998740025999999976972003413445738876655520103222334652699970344567786 Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC Q ss_conf 45998613277789899999999999999985689996589984---045555565799999999740245713200234 Q gi|254780498|r 149 KCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN---VGTEEIKGNDVLQESARLLRGECCGAFKYKGFI 225 (364) Q Consensus 149 ~~vllD~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLN---iG~E~~KG~~~~kea~~LL~~~~~~~~nF~Gni 225 (364) ..++.||+.|++|++++|+++|...+..++.+ +++.|||+||+ .|+..+.-+..++++.+++++. .+++.+-|-. T Consensus 165 ~l~~tD~avn~~P~~eqla~Ia~~aa~~~~~~-g~~~PkVAlLS~s~~gs~~~~~~~~~~~a~~~~~~~-~~~~~vdGem 242 (332) T d2af4c1 165 TFLFADSGMVEMPSVEDVANIAVISAKTFELL-VQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQEL-APDIAIDGEL 242 (332) T ss_dssp EEEEETSSSCSSCCHHHHHHHHHHHHHHHHHH-HCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHH-CTTSEEEEEE T ss_pred EEEEECCCCEECCCHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH-CCCCEECCCH T ss_conf 39984653310876899999999999999861-244550567751256798772046679999998604-8892241520 Q ss_pred CHH--------------HCCCCCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 554--------------53245683899755-127889999888899999999986322208899999989999999972 Q gi|254780498|r 226 EAN--------------DIAKGFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEG 290 (364) Q Consensus 226 Eg~--------------~i~~g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~~l~~~~~~ 290 (364) -.+ .-+.|.+||+|.-- =+|||.-|... . T Consensus 243 q~D~Al~~~~a~~k~~~s~v~G~AnvLIfPnl~agNi~yK~l~------------------------------------~ 286 (332) T d2af4c1 243 QVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIAQ------------------------------------R 286 (332) T ss_dssp CHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHHH------------------------------------H T ss_pred HHHHCCCHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHH------------------------------------H T ss_conf 2422138877874189997789899899488178689999999------------------------------------8 Q ss_pred CCHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC Q ss_conf 6968708746742161489838899868999999999999960 Q gi|254780498|r 291 FDPRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN 333 (364) Q Consensus 291 ~d~~~~gGa~llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~ 333 (364) +---..-|.+|+|++.||+....+++...+.|.+-.+.-..+. T Consensus 287 ~~~a~~~Gpil~G~~~Pv~~~sR~~s~~~i~~~~alaa~~A~~ 329 (332) T d2af4c1 287 LAKAEAYGPITQGLAKPINDLSRGCSDEDIVGAVAITCVQAAA 329 (332) T ss_dssp TSCCEEEEEEEESBSSCEEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred HCCCEEECCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 4398487504326899878789999989999999999999874 No 7 >d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Probab=98.58 E-value=8.1e-06 Score=53.71 Aligned_cols=266 Identities=15% Similarity=0.159 Sum_probs=155.7 Q ss_pred EEEEEEECCCC--CCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCC----------------EEEECC Q ss_conf 23999974687--778177799999999857991799978989999998626975155----------------799778 Q gi|254780498|r 12 VDTISLDLMGG--DLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKER----------------SCFHHC 73 (364) Q Consensus 12 m~kIAVDaMGG--D~~P~~vi~Ga~~al~~~~~i~iiLvGdee~I~~~l~~~~~~~~r----------------i~Ii~a 73 (364) -.||+| .||= --||+.+++. +++....+++++||.+.++......+...+. +.+++. T Consensus 4 ~krIaI-T~GDPaGIGPEIilK~----~~~~~~~~~ivigd~~~l~~~~~~l~~~~~i~~i~~~~~~~~~~~~~l~i~~~ 78 (329) T d1ptma_ 4 TQRVVI-TPGEPAGIGPDLVVQL----AQREWPVELVVCADATLLTNRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPV 78 (329) T ss_dssp CCEEEE-ECCSTTSSHHHHHHHH----TTSCCSSEEEEEECHHHHHHHHHHTTCCCEEEECCTTSCCCCCCTTEEEEEEC T ss_pred CCEEEE-ECCCCCHHHHHHHHHH----HHHCCCCCEEEEECHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCCCC T ss_conf 986999-8278607489999999----85168998799989999999999849996278868722320012543123540 Q ss_pred CC--CCCCCC---HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHH------HHCCCCCCCCCCCHHH Q ss_conf 52--017783---0679997137642799999998549953999706-4267888887------5322556763220011 Q gi|254780498|r 74 EV--SIAMDE---RPADALRRGRNVSSMWRAIEAVKKNQAASVVTAG-NTGALIAMAR------LCLSRISGVDRPSLAA 141 (364) Q Consensus 74 ~~--vI~mde---~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaG-nTGA~la~a~------~~lg~i~Gv~RPala~ 141 (364) .. -+.... ....+. -.|+..|++++++|++||+|.+= |--++..++. -+|...-+...+. |- T Consensus 79 ~~~~~~~~G~~~~~~g~~a-----~~~l~~A~~~~~~g~~~alVT~PInK~~i~~ag~~f~GHTE~La~~~~~~~~~-Mm 152 (329) T d1ptma_ 79 ALRAPVTAGQLAVENGHYV-----VETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVV-MM 152 (329) T ss_dssp CCSSCCBTTBCCTTHHHHH-----HHHHHHHHHHHHHTSCSEEEECCCCHHHHHHTTCCCCCHHHHHHHHTTCSCCE-EE T ss_pred HHCCCCCCCCCCCCHHHHH-----HHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCCCCCCEEEEEHHCCCCCCCHH-HH T ss_conf 0001223344321000378-----99999999998638765143174044555313776431541000022355268-88 Q ss_pred CCCCCCCCEEEE-------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE--E--CCCCCCCCCHH---HHHH Q ss_conf 055889845998-------61327778989999999999999998568999658998--4--04555556579---9999 Q gi|254780498|r 142 FWPTVKGKCIIL-------DVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLL--N--VGTEEIKGNDV---LQES 207 (364) Q Consensus 142 ~~Pt~~g~~vll-------D~GAN~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLL--N--iG~E~~KG~~~---~kea 207 (364) ++ +.+=.++++ |+-. .-+.+.+.+--..-....+.-+|+++||+|++ | -|+.-.-|+|. +.-| T Consensus 153 l~-~~~L~V~~vTtHipLk~V~~--~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGE~G~~G~EE~~ii~Pa 229 (329) T d1ptma_ 153 LA-TEELRVALATTHLPLRDIAD--AITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPV 229 (329) T ss_dssp EE-SSSCEEEESSCSSCGGGHHH--HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGGGTTCSHHHHTHHHH T ss_pred HH-HHHHHEEEEEECCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 77-64420011011202555554--2106889999999999999851985400257511654220011014556778889 Q ss_pred HHHHHHCCCCCCCEECCCCHHHCCC----CCCCEEEECC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9997402457132002345545324----5683899755-1278899998888999999999863222088999999899 Q gi|254780498|r 208 ARLLRGECCGAFKYKGFIEANDIAK----GFVDVIVTEG-FSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKK 282 (364) Q Consensus 208 ~~LL~~~~~~~~nF~GniEg~~i~~----g~~DVvV~DG-FtGNi~LKt~EG~~~~~~~~lk~~~~~~~~~~~~~~l~~~ 282 (364) -+.|++. .++..|.+=++-+|. ++.|+|||== =.|=|.+|+. T Consensus 230 i~~~~~~---gi~v~GP~paDt~F~~~~~~~~D~vvamYHDQglip~K~~------------------------------ 276 (329) T d1ptma_ 230 LNELRAQ---GMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ------------------------------ 276 (329) T ss_dssp HHHHHHT---TCEEEEEECHHHHSSHHHHTTCSEEEESSHHHHHHHHHTT------------------------------ T ss_pred HHHHHHC---CCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHC------------------------------ T ss_conf 9999866---9554799886024545422774189886243100555541------------------------------ Q ss_pred HHHHHHHHCCHHHCCCEEEEEECCEEE-EEC---------CCCCHHHHHHHHHHHHHHHHCC Q ss_conf 999999726968708746742161489-838---------8998689999999999999607 Q gi|254780498|r 283 SLREVKEGFDPRNFNGGVLLGVDGLVV-KGH---------GSSDAKSIFNVLGIAHNMSQNG 334 (364) Q Consensus 283 ~l~~~~~~~d~~~~gGa~llGl~g~vi-k~H---------G~s~~~a~~~ai~~a~~~~~~~ 334 (364) +. ..+=-+-|||.=+-. -.| |.++..++.+||+.|.+++++. T Consensus 277 ---------~f-~~~vn~tlGLp~irtSpdHGTA~dIagk~~A~~~s~~~ai~~a~~~~~~~ 328 (329) T d1ptma_ 277 ---------GF-GRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNT 328 (329) T ss_dssp ---------CS-SSCEEEEESSSSEEEECSSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHHH T ss_pred ---------CC-CCEEEEECCCCCEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf ---------45-64079843899127689987224343789899699999999999998617 No 8 >d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium [TaxId: 90371]} Probab=69.41 E-value=2.7 Score=18.84 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=15.1 Q ss_pred EEEECCCCCC--CCHHHHHHHHHHHHH-CCCCEEEE Q ss_conf 9997468777--817779999999985-79917999 Q gi|254780498|r 15 ISLDLMGGDL--GARDLILGASKFLEA-HPRIRFLM 47 (364) Q Consensus 15 IAVDaMGGD~--~P~~vi~Ga~~al~~-~~~i~iiL 47 (364) |-+=..|.-. +.+.++++....+++ .|+..+.. T Consensus 4 illv~fGs~~~e~~~~~i~~i~~~v~~~~Pd~~V~~ 39 (257) T d1qgoa_ 4 LLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFR 39 (257) T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHHHTCTTSEEEE T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 999958999656699999999999999888991885 No 9 >d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=67.08 E-value=1.8 Score=20.05 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=20.7 Q ss_pred CHHHCCCCCCCEEEECC-HHHHHHHHHH Q ss_conf 55453245683899755-1278899998 Q gi|254780498|r 226 EANDIAKGFVDVIVTEG-FSGNIAIKAA 252 (364) Q Consensus 226 Eg~~i~~g~~DVvV~DG-FtGNi~LKt~ 252 (364) +-.|+..+.+||+|||+ |...++.+.. T Consensus 42 ~~sd~~~~~~DVvvTD~scp~~vl~~a~ 69 (106) T d1kzyc2 42 HNKDIALGVFDVVVTDPSCPASVLKCAE 69 (106) T ss_dssp SCCCSCGGGCSEEEECTTCCHHHHHHHH T ss_pred HHCCCCCCCCCEEEECCCCCHHHHHHHH T ss_conf 2224764436589967989899999988 No 10 >d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Probab=55.18 E-value=4 Score=17.78 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=61.1 Q ss_pred HHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99998549953999706426788888753225567632200110558898459986132777898999999999999999 Q gi|254780498|r 99 AIEAVKKNQAASVVTAGNTGALIAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFAR 178 (364) Q Consensus 99 a~~lvk~g~aDa~VSaGnTGA~la~a~~~lg~i~Gv~RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~qfA~mGs~yak 178 (364) +-+.+.++.+|.++|.|.|++++.-. ++-|- + .+..+.-++++ +..+ T Consensus 43 ~~~~~~~~~~DviISRG~ta~~ir~~---------~~iPV------------V------~I~vs~~Dil~------al~~ 89 (186) T d2pjua1 43 IRKKLANERCDAIIAAGSNGAYLKSR---------LSVPV------------I------LIKPSGYDVLQ------FLAK 89 (186) T ss_dssp HHHHTTTSCCSEEEEEHHHHHHHHTT---------CSSCE------------E------EECCCHHHHHH------HHHH T ss_pred HHHHHHCCCCCEEEECCHHHHHHHHH---------CCCCE------------E------EECCCHHHHHH------HHHH T ss_conf 99998708998999796389999986---------89987------------9------97088768999------9999 Q ss_pred HHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHC---C----CCCCCEEEECCHHHHHHH Q ss_conf 8568999658998404555556579999999974024571320023455453---2----456838997551278899 Q gi|254780498|r 179 SVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDI---A----KGFVDVIVTEGFSGNIAI 249 (364) Q Consensus 179 ~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i---~----~g~~DVvV~DGFtGNi~L 249 (364) . ...++|||+.+.+. - ..-.+.-.++|.- ++.+.=+....|+ . ..-+||||+|+.+-+.+- T Consensus 90 a--~~~~~kiavV~~~~-~---~~~~~~~~~ll~~----~i~~~~~~~~~e~~~~v~~l~~~G~~vVVG~~~~~~~A~ 157 (186) T d2pjua1 90 A--GKLTSSIGVVTYQE-T---IPALVAFQKTFNL----RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 157 (186) T ss_dssp T--TCTTSCEEEEEESS-C---CHHHHHHHHHHTC----CEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHH T ss_pred H--HHHCCCEEEEECCC-C---CHHHHHHHHHHCC----CEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHHHH T ss_conf 9--97589789991776-2---5699999999599----648999638899999999999879989999859999999 No 11 >d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=51.93 E-value=4.5 Score=17.45 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=37.8 Q ss_pred HHHHHHHHCCHHHCCCEEEEEECCEE-EEECCCCCHHHHHHHHHHHH-HHHHCCHHHHHHHHHHH Q ss_conf 99999972696870874674216148-98388998689999999999-99960706899999999 Q gi|254780498|r 283 SLREVKEGFDPRNFNGGVLLGVDGLV-VKGHGSSDAKSIFNVLGIAH-NMSQNGFIDMVKDDMQR 345 (364) Q Consensus 283 ~l~~~~~~~d~~~~gGa~llGl~g~v-ik~HG~s~~~a~~~ai~~a~-~~~~~~~~~~i~~~~~~ 345 (364) .++.+++.++ --+..|.||-| |++.-.-+..++.+||+.+. +....++-+.+++.|++ T Consensus 23 ml~~l~~~~~-----~eI~VG~NGrIWi~~~~~~~~i~i~~aI~~~e~~~~~~~~~~~vk~~l~e 82 (85) T d2ja9a2 23 LLKVLAAHTK-----FEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKE 82 (85) T ss_dssp HHHHHHTTCC-----CEEEEETTTEEEEECSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTTT T ss_pred HHHHHHHHCC-----CEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999874369-----06999448689997898888999999999999867776799999999999 No 12 >d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Carboxydothermus hydrogenoformans [TaxId: 129958]} Probab=43.50 E-value=8.4 Score=15.75 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=49.5 Q ss_pred CCCCCCHHHHHHHH-HH----------HHHHHHHHCCCCCCEEEEEECCCCCCC-------CC------HH---HHHHHH Q ss_conf 27778989999999-99----------999999856899965899840455555-------65------79---999999 Q gi|254780498|r 157 ATIGSTVSHMVQLS-IL----------GSFFARSVAGINCPSIGLLNVGTEEIK-------GN------DV---LQESAR 209 (364) Q Consensus 157 AN~d~~~~~L~qfA-~m----------Gs~yak~~~~~~~PrVgLLNiG~E~~K-------G~------~~---~kea~~ 209 (364) -|.|.+|.+|..-+ .+ +....-.+||.+.|+..-.|.|+=+.+ |. .+ .+|-.+ T Consensus 196 tg~d~D~~~l~~~~lr~glad~~g~~l~~~~~di~fG~P~p~~~~v~lGvl~~d~vnIlV~GH~p~l~~~iv~~~~e~~~ 275 (633) T d1su7a_ 196 MGCDADAQNLLLGGLRCSLADLAGCYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSKEMEN 275 (633) T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEESGGGCCTTSEEEEEESSCHHHHHHHHHHHHHTHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 18888999999999998851358999999988985589987055235553269986699989985178999999899999 Q ss_pred HHHHCCCCCCCEECCCC-H-----------------HH--CCCCCCCEEEECC Q ss_conf 97402457132002345-5-----------------45--3245683899755 Q gi|254780498|r 210 LLRGECCGAFKYKGFIE-A-----------------ND--IAKGFVDVIVTEG 242 (364) Q Consensus 210 LL~~~~~~~~nF~GniE-g-----------------~~--i~~g~~DVvV~DG 242 (364) ++++.....||.+|-+. | .+ +++|.+|++|.|- T Consensus 276 ~ak~~ga~GI~v~G~cCTg~E~l~r~g~p~~~n~~~~E~~~~tGavD~~vvD~ 328 (633) T d1su7a_ 276 EARAAGATGINVVGICCTGNEVLMRHGIPACTHSVSQEMAMITGALDAMILDY 328 (633) T ss_dssp HHHHTTSSCEEEEEEHHHHHHHHHHHCCCEEECGGGHHHHHHTSCEEEEEECS T ss_pred HHHHCCCCCEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 99974799649998615688876225875233848878864679875499855 No 13 >d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]} Probab=41.58 E-value=5.9 Score=16.74 Aligned_cols=12 Identities=17% Similarity=0.399 Sum_probs=6.9 Q ss_pred CCEEEEEECCHH Q ss_conf 953999706426 Q gi|254780498|r 107 QAASVVTAGNTG 118 (364) Q Consensus 107 ~aDa~VSaGnTG 118 (364) ++|.+|+.|-|+ T Consensus 70 ~~DlvIttGG~s 81 (144) T d1wu2a3 70 ECDIVLITGGSA 81 (144) T ss_dssp CSEEEECC---- T ss_pred CCCEEEECCCCC T ss_conf 056898716644 No 14 >d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=34.09 E-value=10 Score=15.25 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=37.0 Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCEEEE-CCCCCCCC----CCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHH Q ss_conf 7999789899999986269751557997-78520177----830679997137642799999998549953999706426 Q gi|254780498|r 44 RFLMYGDAKVCLPILDSHPLLKERSCFH-HCEVSIAM----DERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTG 118 (364) Q Consensus 44 ~iiLvGdee~I~~~l~~~~~~~~ri~Ii-~a~~vI~m----de~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTG 118 (364) .++++||+++.+.+ +++ . +..+++ +..++... +-.|...+...-+..|...+++.+..-.++.++..|..| T Consensus 14 ~vi~~Gdp~r~~~i-a~~--l-d~~~~~~~~r~~~~~~G~~~g~~v~v~~~GiG~~~aa~~~~el~~~g~~~iI~~GtaG 89 (234) T d1je0a_ 14 RVLVVGDPGRARLL-STL--L-QNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTG 89 (234) T ss_dssp EEEEESCHHHHHHH-GGG--S-EEEEEEECGGGCCEEEEEETTEEEEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEEE T ss_pred EEEECCCHHHHHHH-HHH--H-CCCEEEECCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 59947997999999-997--1-7876852358818999999107999995787678899999999745984899971024 Q ss_pred HH Q ss_conf 78 Q gi|254780498|r 119 AL 120 (364) Q Consensus 119 A~ 120 (364) ++ T Consensus 90 ~l 91 (234) T d1je0a_ 90 AL 91 (234) T ss_dssp EC T ss_pred CC T ss_conf 46 No 15 >d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus thermophilus [TaxId: 274]} Probab=33.42 E-value=9.3 Score=15.49 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=46.6 Q ss_pred EEEEECCHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCHHH Q ss_conf 799978989999998626975155799778520177----8306799971376427999999985499539997064267 Q gi|254780498|r 44 RFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAM----DERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGA 119 (364) Q Consensus 44 ~iiLvGdee~I~~~l~~~~~~~~ri~Ii~a~~vI~m----de~P~~AlR~kK~~SSm~~a~~lvk~g~aDa~VSaGnTGA 119 (364) .++++||+++.+.+.+.+- .+...+-+..++-.. +.+|.......=+..|...+++.+.+-.++.++..|.+|+ T Consensus 15 ~vi~~Gdp~R~~~ia~~~~--~~~~~~~~~r~~~~~~G~~~g~~v~~~~~GiG~~~aa~~~~~l~~~g~~~iI~~Gt~G~ 92 (234) T d1odka_ 15 RVLLPGDPGRAEWIAKTFL--QNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVVEELVRLGARVLVRVGTAGA 92 (234) T ss_dssp EEEECSCHHHHHHHHHHHC--EEEEEEECGGGCCEEEEEETTEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEEEEEEEE T ss_pred EEEECCCHHHHHHHHHHHH--HCCEEEECCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 6996899799999999874--08699730277489999998879999976867203557776653379848999536566 Q ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCC-CCCEEEEECCCCCCCCHH Q ss_conf 888887532255676322001105588-984599861327778989 Q gi|254780498|r 120 LIAMARLCLSRISGVDRPSLAAFWPTV-KGKCIILDVGATIGSTVS 164 (364) Q Consensus 120 ~la~a~~~lg~i~Gv~RPala~~~Pt~-~g~~vllD~GAN~d~~~~ 164 (364) +- |.. -|..++.+....-|.++. T Consensus 93 l~----------------------~~~~~gdvVi~~~~~~~d~~~~ 116 (234) T d1odka_ 93 AS----------------------SDLAPGELIVAQGAVPLDGTTR 116 (234) T ss_dssp SS----------------------TTSCTTCEEEEEEEEEESHHHH T ss_pred CC----------------------CCCCCCEEEEECCCCCCCCCHH T ss_conf 66----------------------0014781798300003556312 No 16 >d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Rhodospirillum rubrum [TaxId: 1085]} Probab=31.60 E-value=13 Score=14.56 Aligned_cols=86 Identities=10% Similarity=0.220 Sum_probs=49.1 Q ss_pred CCCCCCHHHHHHHHH-----------HHHHHHHHHCCCCCCEEEEEECCCC--CCCC-----CH------HHHHH----H Q ss_conf 277789899999999-----------9999999856899965899840455--5556-----57------99999----9 Q gi|254780498|r 157 ATIGSTVSHMVQLSI-----------LGSFFARSVAGINCPSIGLLNVGTE--EIKG-----ND------VLQES----A 208 (364) Q Consensus 157 AN~d~~~~~L~qfA~-----------mGs~yak~~~~~~~PrVgLLNiG~E--~~KG-----~~------~~kea----~ 208 (364) .|.|.++++|..-+. +.....-.+||.+.|...-.|+|+= +.+. .+ ++..+ . T Consensus 176 ~g~d~d~~~l~~~aL~~G~~~~~~m~l~d~~~~~~fG~P~p~~v~~~lGvl~~~~~nIlV~GH~p~l~~~i~~~~~~~~~ 255 (610) T d1jqka_ 176 VGCDADPTNLILGGLRVAMADLDGSMLATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAADLRD 255 (610) T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEESSCCCCTTEEEEEEESSCHHHHHHHHHHHHHTTT T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 58999999999999998765578999999988874599986277146654468886799978970378999987666999 Q ss_pred HHHHHCCCCCCCEECCC-CHH-------------------HCCCCCCCEEEECC Q ss_conf 99740245713200234-554-------------------53245683899755 Q gi|254780498|r 209 RLLRGECCGAFKYKGFI-EAN-------------------DIAKGFVDVIVTEG 242 (364) Q Consensus 209 ~LL~~~~~~~~nF~Gni-Eg~-------------------~i~~g~~DVvV~DG 242 (364) +++++.....||.+|-+ .+. .+|+|.+|++|.|- T Consensus 256 ~~~~~~~a~GInvyG~cCT~~Eml~~hg~p~~gn~~~~e~~~~tG~~d~iv~d~ 309 (610) T d1jqka_ 256 EAIAAGAAEGINIIGICCTGHEVMMRHGVPLATNYLSQELPILTGALEAMVVDV 309 (610) T ss_dssp HHHHTTCTTEEEEEEEHHHHHHHHHHSCCCEEECSTTTTHHHHTTCCCEEEECS T ss_pred HHHHHCCCCCEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEC T ss_conf 999863789728997625578876614872124689988999738997299857 No 17 >d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Probab=31.30 E-value=13 Score=14.53 Aligned_cols=65 Identities=29% Similarity=0.297 Sum_probs=37.8 Q ss_pred CCCCCEEEEEECCCCCCCCCHHHH-------HHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHHH Q ss_conf 899965899840455555657999-------9999974024571320023455453245683899755127889999 Q gi|254780498|r 182 GINCPSIGLLNVGTEEIKGNDVLQ-------ESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKA 251 (364) Q Consensus 182 ~~~~PrVgLLNiG~E~~KG~~~~k-------ea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LKt 251 (364) .+++|||+|||.+-|..|.....+ +-.+.+++.. +|.-+. -+.|..-.+|||+|-+=....++.. T Consensus 22 ~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~----~~l~~~-v~~I~~~g~~vv~~~~~I~~~a~~~ 93 (168) T d1gmla_ 22 YIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEE----EYIHQL-CEDIIQLKPDVVITEKGISDLAQHY 93 (168) T ss_dssp EEESCCEEEESSCBSCC--------------CHHHHHHHHH----HHHHHH-HHHHHTTCCSEEEESSCBCHHHHHH T ss_pred CCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHH----HHHHHH-HHHHHHCCCCEEEECCCCCHHHHHH T ss_conf 46786599993321232112445130389999999999999----999999-9999853876698727787899999 No 18 >d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Probab=30.39 E-value=14 Score=14.44 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=34.0 Q ss_pred CCCCCCEEEEEECCCCCCCCCH--------------HHHHHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHH Q ss_conf 6899965899840455555657--------------99999999740245713200234554532456838997551278 Q gi|254780498|r 181 AGINCPSIGLLNVGTEEIKGND--------------VLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGN 246 (364) Q Consensus 181 ~~~~~PrVgLLNiG~E~~KG~~--------------~~kea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGN 246 (364) -.+++|||+|||.+-|..|... +.++--+.+++ . -..|..-.+|||+|-+=... T Consensus 16 ~~i~n~kIlll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~~~l~~-------~-----v~~I~~~g~nvvl~~k~I~~ 83 (153) T d1q3qa2 16 KRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKD-------M-----VDHIAQTGANVVFVQKGIDD 83 (153) T ss_dssp SEESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHH-------H-----HHHHHHHTCCEEEESSCBCH T ss_pred CCCCCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHH-------H-----HHHHHCCCCCCEEECCCCCH T ss_conf 52378609999265241211356447756999999999999999999-------9-----98775148651462377737 Q ss_pred HHHH Q ss_conf 8999 Q gi|254780498|r 247 IAIK 250 (364) Q Consensus 247 i~LK 250 (364) .++. T Consensus 84 ~a~~ 87 (153) T d1q3qa2 84 LAQH 87 (153) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 19 >d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]} Probab=29.43 E-value=11 Score=14.94 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=32.7 Q ss_pred HHHHHHHHHCCCCEEEEEECCHHH----HHHHHHHHCCC--CCCCC-CCCHHHCCCCCCCCEEEEECCCCCCCCHHHHHH Q ss_conf 999999985499539997064267----88888753225--56763-220011055889845998613277789899999 Q gi|254780498|r 96 MWRAIEAVKKNQAASVVTAGNTGA----LIAMARLCLSR--ISGVD-RPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQ 168 (364) Q Consensus 96 m~~a~~lvk~g~aDa~VSaGnTGA----~la~a~~~lg~--i~Gv~-RPala~~~Pt~~g~~vllD~GAN~d~~~~~L~q 168 (364) +..+++...+ ++|.+|+.|-|+. ++..+..-+|. .+|+. ||+=...+-..++..++ -+=.|+ ..-++. T Consensus 56 i~~~i~~~~~-~~DliIttGG~s~g~~D~~~~~l~~~g~~~~~~v~i~PG~p~~~g~~~~~~v~-~LPG~P---~s~~~~ 130 (148) T d1uz5a3 56 LKALIEKAVN-VGDVVVISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIKGKPVF-GLPGYP---TSCLTN 130 (148) T ss_dssp HHHHHHHHHH-HCSEEEEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEETTEEEE-EECSSH---HHHHHH T ss_pred HHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCEEEE-ECCCCH---HHHHHH T ss_conf 8899986413-46689987875554146799999981822504668872374255225987999-878987---999999 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 9999999999856899 Q gi|254780498|r 169 LSILGSFFARSVAGIN 184 (364) Q Consensus 169 fA~mGs~yak~~~~~~ 184 (364) |-.+-.-+-+.+.|.+ T Consensus 131 ~~~~v~P~l~~~~G~~ 146 (148) T d1uz5a3 131 FTLLVVPLLLRALGRE 146 (148) T ss_dssp HHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999976887 No 20 >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=28.96 E-value=10 Score=15.17 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=36.7 Q ss_pred CCEEEEEECCHHH----HHHHHHHH--CCCC--CCCC----CCCHHHCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHH Q ss_conf 9539997064267----88888753--2255--6763----22001105588-984599861327778989999999999 Q gi|254780498|r 107 QAASVVTAGNTGA----LIAMARLC--LSRI--SGVD----RPSLAAFWPTV-KGKCIILDVGATIGSTVSHMVQLSILG 173 (364) Q Consensus 107 ~aDa~VSaGnTGA----~la~a~~~--lg~i--~Gv~----RPala~~~Pt~-~g~~vllD~GAN~d~~~~~L~qfA~mG 173 (364) ++|.+|+.|-||. ++..++-. -+++ .++. ||.....+... .+..++.==| ....-++.|-.+- T Consensus 66 ~~DliittGG~s~g~~D~~~~~l~~~~~~~~~f~~v~~~PG~p~~~g~~~~~~~~~~v~~LPG----~P~a~~~~~~~~v 141 (155) T d2ftsa3 66 RADVIITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPG----NPVSAVVTCNLFV 141 (155) T ss_dssp HCSEEEEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEETTEEEEEEEECS----SHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHCCHHHEEECCCCCCCCEEEECCC----CCHHHHHHHHHHH T ss_conf 467799834666774045599997302303553213443022212243145788765897799----8099999999999 Q ss_pred HHHHHHHCCCCCCE Q ss_conf 99999856899965 Q gi|254780498|r 174 SFFARSVAGINCPS 187 (364) Q Consensus 174 s~yak~~~~~~~Pr 187 (364) .-+-+.+.|+..|| T Consensus 142 ~P~l~~l~G~~~pr 155 (155) T d2ftsa3 142 VPALRKMQGILDPR 155 (155) T ss_dssp HHHHHHHTTCSSCC T ss_pred HHHHHHHCCCCCCC T ss_conf 99999974999999 No 21 >d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cellulomonas sp. [TaxId: 40001]} Probab=28.64 E-value=15 Score=14.25 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=13.5 Q ss_pred CCHHHHHHHHHHHHHC-----CCCEEEEECC Q ss_conf 8177799999999857-----9917999789 Q gi|254780498|r 25 GARDLILGASKFLEAH-----PRIRFLMYGD 50 (364) Q Consensus 25 ~P~~vi~Ga~~al~~~-----~~i~iiLvGd 50 (364) .|-+.++.+..++.+. |++-++| |. T Consensus 9 ~~~~~~~~aa~~i~~~~g~~~p~i~iIl-GS 38 (266) T d1qe5a_ 9 DPFLVARAAADHIAQATGVEGHDMALVL-GS 38 (266) T ss_dssp CHHHHHHHHHHHHHHHHCCSCCSEEEEC-CT T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEE-CC T ss_conf 9899999999999997199999899991-68 No 22 >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Probab=25.24 E-value=17 Score=13.86 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=39.9 Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHCC-- Q ss_conf 132-77789899999999999999985689996589984045555565799999999740245713200234554532-- Q gi|254780498|r 155 VGA-TIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIA-- 231 (364) Q Consensus 155 ~GA-N~d~~~~~L~qfA~mGs~yak~~~~~~~PrVgLLNiG~E~~KG~~~~kea~~LL~~~~~~~~nF~GniEg~~i~-- 231 (364) +|- .++=.++.+++.+ +.+- +-+.-+ +|.-. .++.. ++-.+.+++....++.|.|++...++. T Consensus 18 iGrl~~~K~~~~~i~a~-------~~l~---~~~l~i--vg~~~-~~~~~-~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 83 (166) T d2f9fa1 18 VNRIYPEKRIELQLEVF-------KKLQ---DEKLYI--VGWFS-KGDHA-ERYARKIMKIAPDNVKFLGSVSEEELIDL 83 (166) T ss_dssp ECCSSGGGTHHHHHHHH-------HHCT---TSCEEE--EBCCC-TTSTH-HHHHHHHHHHSCTTEEEEESCCHHHHHHH T ss_pred EECCCCCCCHHHHHHHH-------HHHC---CCEEEE--EEECC-CCCCH-HHHHHHHCCCCCCCEEEEECCCCCCCCCC T ss_conf 92375434999999999-------9833---974999--97224-45422-33332202356675887421221112222 Q ss_pred CCCCCEEEECCHH Q ss_conf 4568389975512 Q gi|254780498|r 232 KGFVDVIVTEGFS 244 (364) Q Consensus 232 ~g~~DVvV~DGFt 244 (364) -..+||+|+=... T Consensus 84 ~~~ad~~i~ps~~ 96 (166) T d2f9fa1 84 YSRCKGLLCTAKD 96 (166) T ss_dssp HHHCSEEEECCSS T ss_pred CCCCCCCCCCCCC T ss_conf 2222223321221 No 23 >d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=23.33 E-value=18 Score=13.67 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.0 Q ss_pred EEEECCEEEEECCCCCHHHHHHHHHHHHHHHHC Q ss_conf 742161489838899868999999999999960 Q gi|254780498|r 301 LLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQN 333 (364) Q Consensus 301 llGl~g~vik~HG~s~~~a~~~ai~~a~~~~~~ 333 (364) +.|++-+..|++|+.++.-+..|...|-...+. T Consensus 39 laGIkDi~~K~~GS~N~~N~vkAt~~aL~~~~t 71 (81) T d2uube1 39 LAGVTDILTKELGSRNPINIAYATMEALRQLRT 71 (81) T ss_dssp HTTCCSEEEEEEECCCHHHHHHHHHHHHHHCCC T ss_pred HHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 808215412048999789999999999992799 No 24 >d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]} Probab=22.40 E-value=8.6 Score=15.71 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=31.2 Q ss_pred HHHHHHHHCCHHHCCCEEEEEECCEE-EEECCCCCHHHHHHHHHHHHHHH Q ss_conf 99999972696870874674216148-98388998689999999999999 Q gi|254780498|r 283 SLREVKEGFDPRNFNGGVLLGVDGLV-VKGHGSSDAKSIFNVLGIAHNMS 331 (364) Q Consensus 283 ~l~~~~~~~d~~~~gGa~llGl~g~v-ik~HG~s~~~a~~~ai~~a~~~~ 331 (364) .|+.+.+++-++ +-.|+||-| |+++--.+..++.|+|..+..+- T Consensus 22 vL~~Lgk~~~FE-----IavG~NGrVWvk~~~~~~ti~i~~aI~~~e~~~ 66 (80) T d2nn6g3 22 IIQEVGKLYPLE-----IVFGMNGRIWVKAKTIQQTLILANILEACEHMT 66 (80) T ss_dssp HHHHTTCSSSCC-----CEEETTTEEEECCSSHHHHHHHHHHHHHTTSSC T ss_pred HHHHHHHHCCEE-----EEEECCCEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 999985028768-----998358768982898899999999999856599 No 25 >d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Probab=22.06 E-value=14 Score=14.27 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=31.7 Q ss_pred CCCCCEEEEEECCCCCCCCCHHHH-------HHHHHHHHCCCCCCCEECCCCHHHCCCCCCCEEEECCHHHHHHHH Q ss_conf 899965899840455555657999-------999997402457132002345545324568389975512788999 Q gi|254780498|r 182 GINCPSIGLLNVGTEEIKGNDVLQ-------ESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250 (364) Q Consensus 182 ~~~~PrVgLLNiG~E~~KG~~~~k-------ea~~LL~~~~~~~~nF~GniEg~~i~~g~~DVvV~DGFtGNi~LK 250 (364) .+++|||++|+.+-|..|.....+ +-....++.. +|.-+. -..|..-.+|||+|-+=....++. T Consensus 18 ~i~~~kI~ll~~~Le~~k~~~~~~i~i~~~~~l~~~~~~E~----~~l~~~-v~~I~~~g~nvvl~~~~I~~~a~~ 88 (152) T d1assa_ 18 VVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQET----NTFKQM-VEKIKKSGANVVLCQKGIDDVAQH 88 (152) T ss_dssp EEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHH----HHHHHH-HHHHHHTTCSEEEESSCBCHHHHH T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHH----HHHHHH-HHHHHHCCCCEEEEECCCCHHHHH T ss_conf 51686299993553413434555054079999999999999----999999-999875156259971563699999 Done!