RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate
acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
         (364 letters)



>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
           genomics, unknown function; HET: MSE; 2.95A {Bacillus
           subtilis} (A:)
          Length = 345

 Score =  186 bits (473), Expect = 3e-48
 Identities = 108/340 (31%), Positives = 180/340 (52%), Gaps = 7/340 (2%)

Query: 14  TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
            I++D  GGD   + +I G  K +EA   +   + GD       L +      R    H 
Sbjct: 4   RIAVDAXGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTSD---RITVLHA 60

Query: 74  EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
           +  I   + P  A+RR +N S +  A + V +N+A + ++AGNTGAL       + RI G
Sbjct: 61  DEVIEPTDEPVRAVRRKKNSSXVLXA-QEVAENRADACISAGNTGALXTAGLFIVGRIKG 119

Query: 134 VDRPSLAAFWPTVKGKC-IILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192
           +DRP+LA   PTV G   ++LDVGA + +   H+VQ +I GS +++ V G+  P +GLLN
Sbjct: 120 IDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYAIXGSVYSQQVRGVTSPRVGLLN 179

Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252
           VGTE+ KGN++ +++ ++L+      F   G +EA D+     DV+VT+GF+GN+ +K  
Sbjct: 180 VGTEDKKGNELTKQTFQILKETANINFI--GNVEARDLLDDVADVVVTDGFTGNVTLKTL 237

Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312
           EG+   I    +     TL S++   ++K  L+E K   +  N+ G  L G+   V+K H
Sbjct: 238 EGSALSIFKXXRDVXTSTLTSKLAAAVLKPKLKEXKXKXEYSNYGGASLFGLKAPVIKAH 297

Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLD 352
           GSSD+ ++F  +  A          +++++++  +     
Sbjct: 298 GSSDSNAVFRAIRQAREXVSQNVAALIQEEVKEEKTDEEG 337


>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
           genomics, enterococcus faecalis V583, PSI, protein
           structure initiative; HET: MSE; 2.26A {Enterococcus
           faecalis} (A:1-119,A:283-336)
          Length = 173

 Score =  123 bits (311), Expect = 3e-29
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 11  NVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCF 70
           N   I++D  GGD   + ++ G     +  P I F +YG        +       +    
Sbjct: 2   NAXKIAVDAXGGDNAPQAIVEGVXLAKQDFPDIEFQLYGKEAEIKKYITDE----KNITI 57

Query: 71  HHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSR 130
            H +  IA D+ P  A+RR +  +S   A +AVK  +A ++ +AGNTGAL+A     + R
Sbjct: 58  IHTDEKIASDDEPVKAIRRKKT-ASXVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGR 116

Query: 131 ISG 133
           I  
Sbjct: 117 IKN 119



 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 293 PRNFNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQ 344
                G VL G+   V+K HG++   ++   +   H   +   +  + +  +
Sbjct: 118 KNKHGGAVLFGLKAPVIKTHGATGPDAVRYTIRQIHTXLETQVVPQLVEYYE 169


>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
           genomics, enterococcus faecalis V583, PSI, protein
           structure initiative; HET: MSE; 2.26A {Enterococcus
           faecalis} (A:120-228)
          Length = 109

 Score =  119 bits (300), Expect = 6e-28
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 5/111 (4%)

Query: 134 VDRPSLAAFWPTV---KGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGL 190
           V+RP L +  P           LD+GA   +   H+VQ ++LGSF+A  V  +  P +GL
Sbjct: 1   VERPGLXSTLPVXGEPDKGFDXLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGL 60

Query: 191 LNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTE 241
           LN GTEE KG+++ +++  LL         + G +EA ++  G  DV+VT+
Sbjct: 61  LNNGTEETKGSELTKKAFELLAA--DETINFVGNVEARELLNGVADVVVTD 109


>1yco_A Branched-chain phosphotransacylase; structural genomics,
           protein structure initiative, PSI, PTB, nysgxrc; 2.40A
           {Enterococcus faecalis V583} (A:95-246)
          Length = 152

 Score = 69.2 bits (169), Expect = 8e-13
 Identities = 12/142 (8%), Positives = 37/142 (26%), Gaps = 21/142 (14%)

Query: 130 RISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPS-- 187
               +   ++           ++ D    I  T + ++++       A+ +   +     
Sbjct: 2   NKPILSHVAMVELPA--GKTFLLTDCAMNIAPTQATLIEIVENAKEVAQKLGLHHPKIAL 59

Query: 188 IGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDI--------------AKG 233
           +        ++  + + +E       +        G +  +                  G
Sbjct: 60  LSAAENFNPKMPSSVLAKEVTAHFNDQQE--ATVFGPLSLDLATSEEAVAHKRYSGPIMG 117

Query: 234 FVDVIV-TEGFSGNIAIKAAEG 254
             D++V      GN   K+   
Sbjct: 118 DADILVVPTIDVGNCLYKSLTL 139


>2iwb_A Methicillin resistance MECR1 protein; antibiotic resistance,
           bacterial antibiotic resistance, methicillin resistance,
           beta-lactamic antibiotics, MRSA; 1.8A {Staphylococcus
           aureus} PDB: 2iwc_A* 2iwd_A* (A:)
          Length = 246

 Score = 29.9 bits (66), Expect = 0.53
 Identities = 3/30 (10%), Positives = 7/30 (23%)

Query: 96  MWRAIEAVKKNQAASVVTAGNTGALIAMAR 125
           + +     K    + V+      A      
Sbjct: 12  LNQLAPYFKGFDGSFVLYNEREQAYSIYNE 41


>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase,
           cell division, cell inner membrane, cell membrane, cell
           shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB:
           3eqv_A* (A:201-258,A:446-542)
          Length = 155

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 96  MWRAIEAVKKNQAASVVTAGNTGALIAMA 124
           + +A+E  +      VV    TG ++A+A
Sbjct: 12  LNKAVEYHQAKAGTVVVLDARTGEILALA 40


>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine
           carboxylation, antibiotic resistance, plasmid,
           transposable element; HET: KCX DRW; 1.40A {Escherichia
           coli} PDB: 1m6k_A* (A:)
          Length = 251

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 99  AIEAVKKNQAASVVTAGNTGALIAMA 124
           A    +  +   ++   +T A IA  
Sbjct: 8   ASPLFEGTEGCFLLYDASTNAEIAQF 33


>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis,
           resistance, cell WALL, transmembrane; 2.4A
           {Streptococcus pneumoniae} (A:218-271,A:475-578)
          Length = 158

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 96  MWRAIEAVKKNQAASVVTAGNTGALIAMA 124
           M    E VK     + + +  TG ++A  
Sbjct: 12  MDAFQEKVKGKYMTATLVSAKTGEILATT 40


>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics,
           dimer; 2.40A {Thermoplasma acidophilum} (A:166-228)
          Length = 63

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 308 VVKGHGSSDAKSIFNVLGIAHNMSQNGFID 337
           ++ G  SSD  S+F+++   H +S+  F+D
Sbjct: 6   IIGGXTSSDPFSVFSIIDRYHKISREEFVD 35


>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET:
           SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB:
           3i58_A* 3i5u_A* 3i64_A* (A:91-332)
          Length = 242

 Score = 26.7 bits (57), Expect = 5.3
 Identities = 11/71 (15%), Positives = 18/71 (25%)

Query: 20  MGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAM 79
              DL                     ++ G     LP      +L           ++A+
Sbjct: 107 TVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAI 166

Query: 80  DERPADALRRG 90
             R A+A   G
Sbjct: 167 LRRCAEAAGSG 177


>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
           structural genomics, NPPSFA; HET: ANP; 1.86A {Homo
           sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
           (A:1-170,A:356-394)
          Length = 209

 Score = 26.0 bits (57), Expect = 7.5
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 245 GNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLI 280
           G I  K A       +  LQ  L+R  ++RI   ++
Sbjct: 120 GIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRML 155


>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix,
           NUDT6, GFG, FGF2AS, antisense basic fibroblast growth
           factor, FGF-2 regulation; 2.30A {Homo sapiens} (A:)
          Length = 113

 Score = 26.0 bits (57), Expect = 8.2
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)

Query: 55  LPILDSH---PLLKERSCFHHCEVSIAM 79
           +PIL S    P      CFHH E   + 
Sbjct: 76  IPILQSRFIAPAASLGFCFHHAESDSST 103


>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP;
           1.70A {Pseudomonas putida} (A:261-398)
          Length = 138

 Score = 25.5 bits (55), Expect = 9.8
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 35  KFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHCEVSIAMDERPADALRRGRNVS 94
           +FL   P++  + Y      L     + L +++       ++  +        R    + 
Sbjct: 18  EFLARQPQVELIHY----PGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQ 73

Query: 95  SMWRAI 100
              RA+
Sbjct: 74  LFSRAV 79


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,657,190
Number of extensions: 116324
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 19
Length of query: 364
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 274
Effective length of database: 1,913,599
Effective search space: 524326126
Effective search space used: 524326126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)