RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate
acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
(364 letters)
>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Enterococcus faecalis [TaxId: 1351]}
Length = 329
Score = 247 bits (631), Expect = 1e-66
Identities = 102/335 (30%), Positives = 175/335 (52%), Gaps = 11/335 (3%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
I++D MGGD + ++ G + P I F +YG + + H
Sbjct: 2 KIAVDAMGGDNAPQAIVEGVMLAKQDFPDIEFQLYGKEAEIKKYITDEKNIT----IIHT 57
Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
+ IA D+ P A+RR + +SM A +AVK +A ++ +AGNTGAL+A + RI
Sbjct: 58 DEKIASDDEPVKAIRRKKT-ASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIKN 116
Query: 134 VDRPSLAAFWPTVKGK---CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGL 190
V+RP L + P + +LD+GA + H+VQ ++LGSF+A V + P +GL
Sbjct: 117 VERPGLMSTLPVMGEPDKGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGL 176
Query: 191 LNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIK 250
LN GTEE KG+++ +++ LL + G +EA ++ G DV+VT+GF+GN +K
Sbjct: 177 LNNGTEETKGSELTKKAFELL--AADETINFVGNVEARELLNGVADVVVTDGFTGNAVLK 234
Query: 251 AAEGAVRHISGVLQKS-LNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVV 309
+ EG ++ +L+ + L+ + ++G LL+K +L +K+ D G VL G+ V+
Sbjct: 235 SIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALHGMKDEMDYSKHGGAVLFGLKAPVI 294
Query: 310 KGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQ 344
K HG++ ++ + H M + + + + +
Sbjct: 295 KTHGATGPDAVRYTIRQIHTMLETQVVPQLVEYYE 329
>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Bacillus subtilis [TaxId: 1423]}
Length = 334
Score = 244 bits (623), Expect = 1e-65
Identities = 109/336 (32%), Positives = 188/336 (55%), Gaps = 7/336 (2%)
Query: 14 TISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
I++D MGGD + +I G K +EA + + GD L + +R H
Sbjct: 3 RIAVDAMGGDHAPKAVIDGVIKGIEAFDDLHITLVGDKTTIESHLTTTS---DRITVLHA 59
Query: 74 EVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLSRISG 133
+ I + P A+RR + SSM + V +N+A + ++AGNTGAL+ + RI G
Sbjct: 60 DEVIEPTDEPVRAVRR-KKNSSMVLMAQEVAENRADACISAGNTGALMTAGLFIVGRIKG 118
Query: 134 VDRPSLAAFWPTVKGK-CIILDVGATIGSTVSHMVQLSILGSFFARSVAGINCPSIGLLN 192
+DRP+LA PTV G ++LDVGA + + H+VQ +I+GS +++ V G+ P +GLLN
Sbjct: 119 IDRPALAPTLPTVSGDGFLLLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLN 178
Query: 193 VGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGNIAIKAA 252
VGTE+ KGN++ +++ ++L+ + G +EA D+ DV+VT+GF+GN+ +K
Sbjct: 179 VGTEDKKGNELTKQTFQILKE--TANINFIGNVEARDLLDDVADVVVTDGFTGNVTLKTL 236
Query: 253 EGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312
EG+ I +++ + TL S++ ++K L+E+K + N+ G L G+ V+K H
Sbjct: 237 EGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLKEMKMKMEYSNYGGASLFGLKAPVIKAH 296
Query: 313 GSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRD 348
GSSD+ ++F + A M +++++++ +
Sbjct: 297 GSSDSNAVFRAIRQAREMVSQNVAALIQEEVKEEKT 332
>d1vqqa3 e.3.1.1 (A:328-668) Penicillin binding protein 2a (PBP2A),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 341
Score = 28.3 bits (61), Expect = 1.2
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 99 AIEAVKKNQAASVVTAGNTGALIAMA 124
+K + + TG L+A+
Sbjct: 9 IYNNMKNDYGSGTAIHPQTGELLALV 34
>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x),
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 368
Score = 27.0 bits (58), Expect = 2.4
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 94 SSMWRAIEAVKKNQAASVVTAGNTGALIAMA 124
+ M E VK + + + TG ++A
Sbjct: 12 TQMDAFQEKVKGKYMTATLVSAKTGEILATT 42
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 25.9 bits (56), Expect = 5.4
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 1/61 (1%)
Query: 296 FNGGVLLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLDVHE 355
G + DG V G K + N D + + E
Sbjct: 13 HKGRSAMSGDGQVTFGQAVV-MKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLE 71
Query: 356 K 356
+
Sbjct: 72 E 72
>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding
protein FhuD {Escherichia coli [TaxId: 562]}
Length = 260
Score = 25.2 bits (54), Expect = 7.9
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 97 WRAIEAVKKNQAASVVTAGNTGALIAMARL 126
W+A+ V+ + V GA ++
Sbjct: 223 WQAMPFVRAGRFQRVPAVWFYGATLSAMHF 252
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 25.0 bits (54), Expect = 9.4
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 35 KFLEAHPRIRFLMYGDAKVCLPILDSHPLLKERSCFHHC 73
+FLE HP I +V P L SHP +
Sbjct: 276 RFLEGHPSI-------TRVYYPGLSSHPQYELGQRQMSL 307
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.402
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,306,733
Number of extensions: 59839
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 13
Length of query: 364
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,226,816
Effective search space: 341054848
Effective search space used: 341054848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)