BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate
acyltransferase PlsX [Candidatus Liberibacter asiaticus str. psy62]
(364 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 364
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MNQMDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDS 60
MNQMDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDS
Sbjct: 1 MNQMDVLQGGNVDTISLDLMGGDLGARDLILGASKFLEAHPRIRFLMYGDAKVCLPILDS 60
Query: 61 HPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGAL 120
HPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGAL
Sbjct: 61 HPLLKERSCFHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQAASVVTAGNTGAL 120
Query: 121 IAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSV 180
IAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSV
Sbjct: 121 IAMARLCLSRISGVDRPSLAAFWPTVKGKCIILDVGATIGSTVSHMVQLSILGSFFARSV 180
Query: 181 AGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVT 240
AGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVT
Sbjct: 181 AGINCPSIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVT 240
Query: 241 EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGV 300
EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGV
Sbjct: 241 EGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGV 300
Query: 301 LLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLDVHEKKIVS 360
LLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLDVHEKKIVS
Sbjct: 301 LLGVDGLVVKGHGSSDAKSIFNVLGIAHNMSQNGFIDMVKDDMQRVRDSLLDVHEKKIVS 360
Query: 361 GSGK 364
GSGK
Sbjct: 361 GSGK 364
>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 354
Score = 26.2 bits (56), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 258 HISGVLQKSLNRTLLSRIGCLLIKKSLREVKEGFD 292
H++G+L KS+ +S+ LL ++R+V E D
Sbjct: 208 HVNGILHKSIVPASISQKTSLLAHSAMRKVLETLD 242
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 90 GRNVSSMWRAIEAVKKNQAASVVTAGNTGALIAMARLCLS---------RISGVDRPSLA 140
G ++ M E + K ++ AG+TG++ A ARL + + G+D
Sbjct: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268
Query: 141 AFWPTVKGKCIILDVGATIGST 162
A W T+ K + T ST
Sbjct: 269 AIWNTITEKSTNITSSNTTYST 290
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 70 FHHCEVSIAMDERPADALRRGRNVSSMWRAIEAVKKNQ 107
+ +++A D RGR++S+M R E ++NQ
Sbjct: 253 YKKVRIAVAADVDEEGGASRGRSLSAMRRRQEKFRRNQ 290
>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 495
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 230 IAKGFVDVIVTEGFSGNIAIKAAEGAVRHISGVLQKSLNRTLLSRIGCLLIKKSLRE 286
IA+G + ++T G+IAIK+AE V G+ + + G LI+ LRE
Sbjct: 412 IAEGEIPTVLTSFGQGSIAIKSAEQGV----GLGLPIAQSIMANHGGQFLIRSKLRE 464
>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 449
Score = 23.1 bits (48), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 187 SIGLLNVGTEEIKGNDVLQESARLLRGECCGAFKYKGFIEANDIAKGFVDVIVTEGFSGN 246
+I + V +IKG + R + E F E I KG +V+ ++ FSG
Sbjct: 300 NIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGI 359
Query: 247 I 247
I
Sbjct: 360 I 360
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,388
Number of Sequences: 1233
Number of extensions: 9242
Number of successful extensions: 26
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 10
length of query: 364
length of database: 328,796
effective HSP length: 75
effective length of query: 289
effective length of database: 236,321
effective search space: 68296769
effective search space used: 68296769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)