Query gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 167
No_of_seqs 126 out of 658
Neff 8.0
Searched_HMMs 39220
Date Sun May 29 23:18:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780499.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11193 hypothetical protein; 99.8 6.9E-19 1.8E-23 124.2 13.5 143 1-157 1-143 (173)
2 pfam02620 DUF177 Uncharacteriz 99.7 7.1E-16 1.8E-20 107.4 9.2 79 63-152 1-79 (118)
3 COG1399 Predicted metal-bindin 99.6 5.2E-15 1.3E-19 102.7 10.6 120 19-152 17-137 (176)
4 pfam05788 Orbi_VP1 Orbivirus R 64.6 5.2 0.00013 19.4 2.3 33 125-158 226-258 (1301)
5 COG3217 Uncharacterized Fe-S p 33.2 21 0.00053 16.0 1.2 58 31-89 152-216 (270)
6 KOG0801 consensus 27.5 21 0.00053 16.0 0.4 11 72-82 177-187 (205)
7 pfam05107 DUF694 Family of unk 25.8 48 0.0012 14.0 2.9 33 64-96 126-158 (278)
8 TIGR01334 modD modD protein; I 20.5 25 0.00064 15.6 -0.3 48 1-48 169-218 (277)
9 TIGR01595 cas_CT1132 CRISPR-as 17.5 72 0.0018 13.0 1.6 69 24-100 102-170 (310)
10 pfam11789 zf-Nse Zinc-finger o 14.8 84 0.0021 12.7 1.3 28 61-91 3-30 (57)
No 1
>PRK11193 hypothetical protein; Provisional
Probab=99.81 E-value=6.9e-19 Score=124.16 Aligned_cols=143 Identities=14% Similarity=0.121 Sum_probs=111.7
Q ss_pred CCCCCCCEEEEEHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEECC
Q ss_conf 98879820899987567897489996399999999986189874347999999982788299999999999812013333
Q gi|254780499|r 1 MRNHSNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCADVKLSVWKKVGVRMSGNLYATIIQSCVITLE 80 (167)
Q Consensus 1 m~~~~~fs~~I~i~~l~~~~~~~~~~~~~~~~~~la~~~~v~~i~~l~~~~~l~~~~~~~v~v~G~i~a~v~~~C~rcL~ 80 (167)
|++.. ....|+..+...++.+++.......+.+|++.+ ....+.+.+++++.....+..+++|+++|++.+.|+|||+
T Consensus 1 M~~~k-LP~~IDp~~~A~~~~~l~G~l~l~~l~RL~d~l-~~~~g~v~~~l~f~~d~~g~~~l~g~v~~~v~l~CQRCL~ 78 (173)
T PRK11193 1 MQKVK-LPLTIDPVRAAQKRLDYDGIYPPEQLKRLAESV-VSVDSDVEVSLSFGIDNQRLVVLKGKAVVEVTLECQRCNE 78 (173)
T ss_pred CCCCC-CCCEECHHHHHHHCCCEEEEECHHHCCHHHHHH-CCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEEHHHCCC
T ss_conf 98877-886388899997389179896169792689984-6888867999999897878689999999999998323497
Q ss_pred CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 22034478899999406432322233223332100012234430026872588999999998738887889987034
Q gi|254780499|r 81 PLLSEVEDTLGCIFVPSSSKFLYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPKKEGITFS 157 (167)
Q Consensus 81 pv~~~i~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDL~~~v~E~l~LalP~yPr~~g~~~~ 157 (167)
||.++++.+|...++....... ...+..+.....+++.+||.++|.|+|+||||+.|||+.....
T Consensus 79 ~~~~~l~~~~~l~~v~~e~~a~------------~l~~~~e~~~~~~~~e~dl~~lvEDElLLaLP~vp~H~~~~C~ 143 (173)
T PRK11193 79 PFTHQVEVEFCFSPVRNDEQAD------------ELPEAYEPIEVNEFGEVDLLQLVEDELILALPIVPMHDSEHCE 143 (173)
T ss_pred EEEEEEEEEEEEEEECCHHHHH------------HCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 0147886669999958977865------------4665357332257665539998777798708976768634588
No 2
>pfam02620 DUF177 Uncharacterized ACR, COG1399.
Probab=99.65 E-value=7.1e-16 Score=107.44 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=64.1
Q ss_pred EEEEEEEEEEECCEEECCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999981201333322034478899999406432322233223332100012234430026872588999999998
Q gi|254780499|r 63 MSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTA 142 (167)
Q Consensus 63 v~G~i~a~v~~~C~rcL~pv~~~i~~~~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDL~~~v~E~l~ 142 (167)
|+|+++|+++++|+|||+||.++++.+|...|++..+..... ...++....++.++.|||.++|+|+++
T Consensus 1 v~g~i~~~v~~~C~RCL~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~d~~~~~~~~~~iDl~~~v~e~i~ 69 (118)
T pfam02620 1 LDGEVEATVTLPCDRCLEPVEYPLDVDFEELFVPEEEEAEDE-----------ELEDDDEEILVEGDEIDLGELVEEELL 69 (118)
T ss_pred CEEEEEEEEEEECCCCCCHHCEEEEEEEEEEEECCCCCCCCC-----------CCCCCCCEEECCCCEECHHHHHHHHHH
T ss_conf 989999999984203093212205855899996285533311-----------255456215357881689999999999
Q ss_pred HCCCCCCCCC
Q ss_conf 7388878899
Q gi|254780499|r 143 IAINPYPKKE 152 (167)
Q Consensus 143 LalP~yPr~~ 152 (167)
|+||++|+|+
T Consensus 70 L~lP~~~~~~ 79 (118)
T pfam02620 70 LALPMKPLCS 79 (118)
T ss_pred HCCCCCCCCC
T ss_conf 7199967778
No 3
>COG1399 Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]
Probab=99.62 E-value=5.2e-15 Score=102.67 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCEEEEEECCH-HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEECCCCEEEEEEEEEEEEEEC
Q ss_conf 97489996399-99999998618987434799999998278829999999999981201333322034478899999406
Q gi|254780499|r 19 TPMNLKLKADS-LDCKKLAEQLGVMSVESWCADVKLSVWKKVGVRMSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPS 97 (167)
Q Consensus 19 ~~~~~~~~~~~-~~~~~la~~~~v~~i~~l~~~~~l~~~~~~~v~v~G~i~a~v~~~C~rcL~pv~~~i~~~~~~~f~p~ 97 (167)
++..|.-..+. +.+.++. ..+..+.+..+.......+..+++++|+++++++++|+|||+||.++++..+++.|...
T Consensus 17 ~~~~~~~~~~~~~~l~rv~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~C~Rcl~~~~~~~~~~~~~~f~~~ 94 (176)
T COG1399 17 RRLDFDELIDLLEQLTRVG--EEVIDVDPGVVVGVSAYAEIDLVVLDGQVSAEVTLECQRCLEPVEYPLDVTVTELFVRP 94 (176)
T ss_pred CCCCCCHHHCCCCCHHHHH--HHHHCCCCCEEEEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEECCC
T ss_conf 4434000220343011201--56621677607778986056169999898887998241108833476888899986178
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4323222332233321000122344300268725889999999987388878899
Q gi|254780499|r 98 SSKFLYPNGDTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPKKE 152 (167)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDL~~~v~E~l~LalP~yPr~~ 152 (167)
.. . ......+++....+.++.|||.++|.|+++||||..|.++
T Consensus 95 ~~-~-----------~~~~~~~dd~v~v~~~~~iDL~~~VeDeilLalP~~~l~~ 137 (176)
T COG1399 95 DE-Q-----------ADEEPLEDDEVEVIEDGEIDLLESVEDEILLALPLVPLCE 137 (176)
T ss_pred CC-C-----------CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 53-1-----------0024676753540577824599999999998578745667
No 4
>pfam05788 Orbi_VP1 Orbivirus RNA-dependent RNA polymerase (VP1). This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbiviruses. VP1 may have both enzymatic and structural roles in the virus life cycle.
Probab=64.61 E-value=5.2 Score=19.37 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 0268725889999999987388878899870345
Q gi|254780499|r 125 FSEDGVIDIGAVIADFTAIAINPYPKKEGITFSN 158 (167)
Q Consensus 125 ~~~~~~iDL~~~v~E~l~LalP~yPr~~g~~~~~ 158 (167)
.+.+..||+-++++|.++++| |||+|=.-.+..
T Consensus 226 ~fg~~ki~p~~lirE~FiiCL-PhPKkINN~LRa 258 (1301)
T pfam05788 226 EFGDEKIDPFDLVRELFIICL-PHPKKINNMLRA 258 (1301)
T ss_pred EECCCCCCHHHHHHHHHHHHC-CCCHHHHHHHCC
T ss_conf 435655588999999986546-980565123037
No 5
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=33.17 E-value=21 Score=16.03 Aligned_cols=58 Identities=7% Similarity=0.158 Sum_probs=31.7
Q ss_pred HHHHHHHHC-CCCCCCEEE----EEEEEEECCCCE--EEEEEEEEEEEEECCEEECCCCEEEEEEE
Q ss_conf 999999861-898743479----999999827882--99999999999812013333220344788
Q gi|254780499|r 31 DCKKLAEQL-GVMSVESWC----ADVKLSVWKKVG--VRMSGNLYATIIQSCVITLEPLLSEVEDT 89 (167)
Q Consensus 31 ~~~~la~~~-~v~~i~~l~----~~~~l~~~~~~~--v~v~G~i~a~v~~~C~rcL~pv~~~i~~~ 89 (167)
.+..|..+. .-.+...+. +++. .++..++ .+--|.+...++-+|+||--+-..+-..+
T Consensus 152 Sl~dL~~r~~~~~~merFRpNlvv~ge-~a~aEd~w~~i~IG~v~F~~vkPC~RCi~Ttvd~~tGe 216 (270)
T COG3217 152 SLADLRRRVPANLEMERFRPNLVVEGE-DAFAEDSWKSIRIGGVRFDVVKPCSRCIFTTVDPDTGE 216 (270)
T ss_pred CHHHHHHHCCCCCCHHHCCCCEEEEEC-CCCCCCCCEEEEECCEEEEEECCCHHCCEEEECCCCCC
T ss_conf 399996315677774217774588601-26645676079973389987655232120447776554
No 6
>KOG0801 consensus
Probab=27.47 E-value=21 Score=16.03 Aligned_cols=11 Identities=55% Similarity=0.800 Sum_probs=4.7
Q ss_pred EECCEEECCCC
Q ss_conf 81201333322
Q gi|254780499|r 72 IQSCVITLEPL 82 (167)
Q Consensus 72 ~~~C~rcL~pv 82 (167)
..+|++||+++
T Consensus 177 kGECvICLEdL 187 (205)
T KOG0801 177 KGECVICLEDL 187 (205)
T ss_pred CCCEEEEHHHC
T ss_conf 77378875350
No 7
>pfam05107 DUF694 Family of unknown function (DUF694). Family of hypothetical bacterial proteins.
Probab=25.78 E-value=48 Score=14.02 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.3
Q ss_pred EEEEEEEEEECCEEECCCCEEEEEEEEEEEEEE
Q ss_conf 999999998120133332203447889999940
Q gi|254780499|r 64 SGNLYATIIQSCVITLEPLLSEVEDTLGCIFVP 96 (167)
Q Consensus 64 ~G~i~a~v~~~C~rcL~pv~~~i~~~~~~~f~p 96 (167)
.|+++|.|+..-.|+|.|+.......++..|.-
T Consensus 126 ~~~v~GPVQ~~~g~Sl~~v~~~~~~~IT~~~~s 158 (278)
T pfam05107 126 SGQVTGPVQFSFARSLHPVEVIFEQGITRMFAT 158 (278)
T ss_pred CCCEEEEEEEEEEEECCCCCCEEEEEECCCCCC
T ss_conf 775780269740014164321135432022215
No 8
>TIGR01334 modD modD protein; InterPro: IPR006242 The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). Their function is unknown. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=20.54 E-value=25 Score=15.57 Aligned_cols=48 Identities=4% Similarity=0.167 Sum_probs=29.9
Q ss_pred CCCCCCCEEEE-EHHHC-CCCCEEEEEECCHHHHHHHHHHCCCCCCCEEE
Q ss_conf 98879820899-98756-78974899963999999999861898743479
Q gi|254780499|r 1 MRNHSNYSYPV-SVQAV-FSTPMNLKLKADSLDCKKLAEQLGVMSVESWC 48 (167)
Q Consensus 1 m~~~~~fs~~I-~i~~l-~~~~~~~~~~~~~~~~~~la~~~~v~~i~~l~ 48 (167)
|.++.||+-.| ++.+- |++-..++.+.-......+...-|++.+.+++
T Consensus 169 l~D~~Dw~gai~rLkq~APE~KItvEadt~~qa~~~l~a~PDilQLdKFt 218 (277)
T TIGR01334 169 LSDNEDWSGAITRLKQQAPEKKITVEADTLKQALAVLRADPDILQLDKFT 218 (277)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECCCCC
T ss_conf 17800278999887743787726874059899999974489766323688
No 9
>TIGR01595 cas_CT1132 CRISPR-associated protein, CT1132 family; InterPro: IPR006482 This protein is found in at least five species that contain CRISPR loci being found exclusively next to other cas proteins. Its function is unknown..
Probab=17.47 E-value=72 Score=13.03 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=46.4
Q ss_pred EEECCHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEECCCCEEEEEEEEEEEEEECCCC
Q ss_conf 99639999999998618987434799999998278829999999999981201333322034478899999406432
Q gi|254780499|r 24 KLKADSLDCKKLAEQLGVMSVESWCADVKLSVWKKVGVRMSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPSSSK 100 (167)
Q Consensus 24 ~~~~~~~~~~~la~~~~v~~i~~l~~~~~l~~~~~~~v~v~G~i~a~v~~~C~rcL~pv~~~i~~~~~~~f~p~~~~ 100 (167)
-...+.-.-..+++-+|++. -|.+-+..+.|. +.+.|+|.|...-+++|+|+...- .++++.|.-..+.
T Consensus 102 GGevd~~~~~~~~~y~DvR~------FGaV~~~~kkGa-m~~~v~GPvq~~~a~Sl~Pv~~~~-~qit~~~~~~eak 170 (310)
T TIGR01595 102 GGEVDKIEEKACAKYIDVRL------FGAVITKSKKGA-MEIDVRGPVQVSYAKSLEPVVILE-LQITRAAAGEEAK 170 (310)
T ss_pred CCCCCHHHHHHHHHCCCEEE------ECCCCCCCCCCC-EECCCCCCEEEEECCCCCCEEEEE-ECCHHHHHHCCHH
T ss_conf 86212458987520342343------021057665631-210222664787445305122030-0111333200102
No 10
>pfam11789 zf-Nse Zinc-finger of the MIZ type in Nse subunit. Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger.
Probab=14.76 E-value=84 Score=12.66 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEEEEEEEEECCEEECCCCEEEEEEEEE
Q ss_conf 9999999999981201333322034478899
Q gi|254780499|r 61 VRMSGNLYATIIQSCVITLEPLLSEVEDTLG 91 (167)
Q Consensus 61 v~v~G~i~a~v~~~C~rcL~pv~~~i~~~~~ 91 (167)
+.+.| +++.+.|-.|+.+|..++...-.
T Consensus 3 i~v~~---~~~sl~CPiT~~~~~~Pv~s~~C 30 (57)
T pfam11789 3 LAVEG---GTISLTCPITLLPFKEPVTSKKC 30 (57)
T ss_pred EEEEC---CEEEEECCCCCCHHHCCCCCCCC
T ss_conf 03431---48864887822454378776877
Done!