Query gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 167
No_of_seqs 126 out of 658
Neff 8.0
Searched_HMMs 23785
Date Tue May 31 21:13:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780499.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2elx_A Zinc finger protein 406 9.7 36 0.0015 13.5 -0.8 14 74-87 9-22 (35)
2 1xdz_A Methyltransferase GIDB; 9.0 63 0.0026 12.2 0.2 16 144-159 222-237 (240)
3 1nnh_A Asparaginyl-tRNA synthe 7.9 90 0.0038 11.3 1.1 26 130-155 262-291 (294)
4 2q5t_A Cholix toxin; domain I 7.5 95 0.004 11.2 1.6 18 131-148 617-634 (642)
5 1chc_A Equine herpes virus-1 r 7.5 48 0.002 12.8 -0.9 17 69-85 2-18 (68)
6 2ect_A Ring finger protein 126 7.2 70 0.003 11.9 -0.2 12 73-84 16-27 (78)
7 1zfo_A LAsp-1; LIM domain, zin 6.4 98 0.0041 11.1 0.2 11 72-82 3-13 (31)
8 2ckl_B Ubiquitin ligase protei 6.2 1.1E+02 0.0046 10.8 0.4 16 73-88 55-70 (165)
9 1ut1_A DRAA, DR hemagglutinin 6.1 1.1E+02 0.0047 10.7 3.3 23 64-86 17-39 (148)
10 1iym_A EL5; ring-H2 finger, ub 5.2 1.1E+02 0.0045 10.9 -0.2 11 73-83 6-16 (55)
No 1
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=9.67 E-value=36 Score=13.54 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=11.0
Q ss_pred CCEEECCCCEEEEE
Q ss_conf 20133332203447
Q gi|254780499|r 74 SCVITLEPLLSEVE 87 (167)
Q Consensus 74 ~C~rcL~pv~~~i~ 87 (167)
.|..|++-|...|.
T Consensus 9 vcavc~kkfvssir 22 (35)
T 2elx_A 9 VCALCLKKFVSSIR 22 (35)
T ss_dssp ECSSSCCEESSHHH
T ss_pred EHHHHHHHHHHHHH
T ss_conf 17988999998998
No 2
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=9.01 E-value=63 Score=12.16 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 3888788998703452
Q gi|254780499|r 144 AINPYPKKEGITFSNI 159 (167)
Q Consensus 144 alP~yPr~~g~~~~~~ 159 (167)
+-.-|||++|+..-.+
T Consensus 222 ~p~~yPRk~g~~~k~P 237 (240)
T 1xdz_A 222 TPKKYPRKPGTPNKSP 237 (240)
T ss_dssp CCTTCSCSTTHHHHSC
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 9877999989777799
No 3
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1
Probab=7.95 E-value=90 Score=11.30 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHC----CCCCCCCCCCC
Q ss_conf 258899999999873----88878899870
Q gi|254780499|r 130 VIDIGAVIADFTAIA----INPYPKKEGIT 155 (167)
Q Consensus 130 ~iDL~~~v~E~l~La----lP~yPr~~g~~ 155 (167)
.|-+.-++.-.+.+. .=+|||.||+.
T Consensus 262 glGidRL~m~l~g~~~Irev~~FPR~~g~~ 291 (294)
T 1nnh_A 262 GIGVERLVRFIVGAKHIAEVQPFPRIPGIP 291 (294)
T ss_dssp EEEHHHHHHHHHTCSSGGGGCSSCCCTTSC
T ss_pred EEHHHHHHHHHHCCCCHHHEEECCCCCCCC
T ss_conf 676999999982898477064068899975
No 4
>2q5t_A Cholix toxin; domain I (receptor binding domain), beta barrel, domain II (translocation domain), six alpha-helix bundle; 2.10A {Vibrio cholerae}
Probab=7.48 E-value=95 Score=11.17 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 588999999998738887
Q gi|254780499|r 131 IDIGAVIADFTAIAINPY 148 (167)
Q Consensus 131 iDL~~~v~E~l~LalP~y 148 (167)
||-..+..|+-+-++|+|
T Consensus 617 iD~~av~KEQsIS~~P~Y 634 (642)
T 2q5t_A 617 IDEEAVAKEQSISTKPPY 634 (642)
T ss_dssp CCHHHHHHGGGGCCCCCC
T ss_pred CCHHHCCHHHCCCCCCCC
T ss_conf 783444312112458999
No 5
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=7.46 E-value=48 Score=12.81 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=11.3
Q ss_pred EEEEECCEEECCCCEEE
Q ss_conf 99981201333322034
Q gi|254780499|r 69 ATIIQSCVITLEPLLSE 85 (167)
Q Consensus 69 a~v~~~C~rcL~pv~~~ 85 (167)
|++...|.+|++.+...
T Consensus 2 ~~~~~~C~IC~~~~~~~ 18 (68)
T 1chc_A 2 ATVAERCPICLEDPSNY 18 (68)
T ss_dssp CCCCCCCSSCCSCCCSC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 79899892298397688
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=7.17 E-value=70 Score=11.89 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=9.4
Q ss_pred ECCEEECCCCEE
Q ss_conf 120133332203
Q gi|254780499|r 73 QSCVITLEPLLS 84 (167)
Q Consensus 73 ~~C~rcL~pv~~ 84 (167)
..|.+||++|..
T Consensus 16 ~eC~ICl~~~~~ 27 (78)
T 2ect_A 16 LECPVCKEDYAL 27 (78)
T ss_dssp CCCTTTTSCCCT
T ss_pred CCCEECCCCCCC
T ss_conf 999316954328
No 7
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=6.43 E-value=98 Score=11.10 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=7.4
Q ss_pred EECCEEECCCC
Q ss_conf 81201333322
Q gi|254780499|r 72 IQSCVITLEPL 82 (167)
Q Consensus 72 ~~~C~rcL~pv 82 (167)
...|+||.+.|
T Consensus 3 n~~CaRC~k~V 13 (31)
T 1zfo_A 3 NPNCARCGKIV 13 (31)
T ss_dssp CCBCSSSCSBC
T ss_pred CCCCCCCCCCC
T ss_conf 87522337710
No 8
>2ckl_B Ubiquitin ligase protein RING2; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_B
Probab=6.16 E-value=1.1e+02 Score=10.81 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.8
Q ss_pred ECCEEECCCCEEEEEE
Q ss_conf 1201333322034478
Q gi|254780499|r 73 QSCVITLEPLLSEVED 88 (167)
Q Consensus 73 ~~C~rcL~pv~~~i~~ 88 (167)
..|.+|++.|..++..
T Consensus 55 l~C~IC~~~~~~p~~~ 70 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTT 70 (165)
T ss_dssp HBCTTTSSBCSSEEEE
T ss_pred CCCCCCCHHHHCCCCC
T ss_conf 8982688076486635
No 9
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP: b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A 1usz_A 1ut2_A
Probab=6.06 E-value=1.1e+02 Score=10.75 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=0.0
Q ss_pred EEEEEEEEEECCEEECCCCEEEE
Q ss_conf 99999999812013333220344
Q gi|254780499|r 64 SGNLYATIIQSCVITLEPLLSEV 86 (167)
Q Consensus 64 ~G~i~a~v~~~C~rcL~pv~~~i 86 (167)
+|..+-+|+-+|.+.+..+....
T Consensus 17 TGt~~LTVTEeC~V~V~~~t~tk 39 (148)
T 1ut1_A 17 TGTTKLTVTEKCQVRVGDLTVAK 39 (148)
T ss_dssp EEEEEEEEECSSEEEESSCCCEE
T ss_pred CCEEEEEEEEEEEEEECCCEEEE
T ss_conf 76089998038679975623000
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=5.18 E-value=1.1e+02 Score=10.88 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=0.0
Q ss_pred ECCEEECCCCE
Q ss_conf 12013333220
Q gi|254780499|r 73 QSCVITLEPLL 83 (167)
Q Consensus 73 ~~C~rcL~pv~ 83 (167)
..|.+|++++.
T Consensus 6 ~~C~IC~~~~~ 16 (55)
T 1iym_A 6 VECAVCLAELE 16 (55)
T ss_dssp CCCTTTCCCCC
T ss_pred CCCEEECCEEE
T ss_conf 99867994845
Done!