RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
         (167 letters)



>gnl|CDD|145656 pfam02620, DUF177, Uncharacterized ACR, COG1399. 
          Length = 118

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 63  MSGNLYATIIQSCVITLEPLLSEVEDTLGCIFVPSSSKFLYPNGDTSGKKNVVVIREPDI 122
           + G + AT+   C   LEP+   ++     +FVP   +      +           + +I
Sbjct: 1   LDGEVEATVTLPCDRCLEPVEYPLDVDFEELFVPEEEEAEDEELEDD---------DEEI 51

Query: 123 LPFSEDGVIDIGAVIADFTAIAINPYPKKE 152
           L   E   ID+G ++ +   +A+   P   
Sbjct: 52  LV--EGDEIDLGELVEEELLLALPMKPLCS 79


>gnl|CDD|33335 COG3533, COG3533, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 589

 Score = 27.2 bits (60), Expect = 2.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 44  VESWCADVKLSVWKKVGVRMSGNLYATIIQS 74
           + +WCA   L V  K  ++  G  YA I + 
Sbjct: 433 LPAWCAAPTLRVNGKEVIQTRGKGYARISRE 463


>gnl|CDD|34096 COG4389, COG4389, Site-specific recombinase [DNA replication,
           recombination, and repair].
          Length = 677

 Score = 26.9 bits (59), Expect = 2.8
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 5   SNYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQL---GVMSVESWCADVKLSVWKKVGV 61
           + ++Y +    +      +  K  ++     AEQ+      +V++  A + + V +   V
Sbjct: 387 AGFNYGIGFMIIHMLHCTVATKQPAMTAASFAEQVDLNEGKAVDNKLAKLLIDVCRSQSV 446

Query: 62  RMSGNLYATIIQSCVITL-------EPLLSEVE 87
            + GN+   I+ +C+I+         PLLS   
Sbjct: 447 AVFGNVSIAILVACLISFGYAHLFHAPLLSPAT 479


>gnl|CDD|39791 KOG4591, KOG4591, KOG4591, Uncharacterized conserved protein,
           contains BTB/POZ domain [General function prediction
           only].
          Length = 280

 Score = 26.3 bits (57), Expect = 4.9
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 16/90 (17%)

Query: 34  KLAEQLGVMSVESWCADVKLSVWKKVG----VRMSGNLYATIIQSCVITLEPLLSEV--- 86
           + AE+L    + +  A++    W  +G     +MS  L   +I     T  PL   +   
Sbjct: 176 EFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAALLYKLIDGK--TENPLHKAIKIE 233

Query: 87  -EDTLGCIFVPSSSKF------LYPNGDTS 109
            ED L   F+   +K          NG  +
Sbjct: 234 REDVLFLYFIEMDAKIPGILNDADHNGALA 263


>gnl|CDD|32099 COG1915, COG1915, Uncharacterized conserved protein [Function
           unknown].
          Length = 415

 Score = 26.0 bits (57), Expect = 5.8
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAVIADFTAIAINPYPKK----EGITFSNIYDT 162
           D S  + +V   + + L      +ID+GAVI +   + + P P+     +    +  + T
Sbjct: 45  DPSYAEILVSAPDHEHLEEILSELIDLGAVIPEIEEVELEPAPQDGVLPDDFYVTTNHPT 104


>gnl|CDD|176958 CHL00015, ndhE, NADH dehydrogenase subunit 4L.
          Length = 101

 Score = 25.3 bits (56), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 6/27 (22%)

Query: 140 FTAIAINPYPKKEGITFSNIYDTDQLK 166
             A+ IN       +TFS+ +D+ QLK
Sbjct: 38  LNAVNINF------VTFSDFFDSRQLK 58


>gnl|CDD|48515 cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA,
           ResA, DsbE and similar proteins. TlpA, ResA and DsbE are
           bacterial protein disulfide reductases with important
           roles in cytochrome maturation. They are
           membrane-anchored proteins with a soluble TRX domain
           containing a CXXC motif located in the periplasm. The
           TRX domains of this family contain an insert,
           approximately 25 residues in length, which correspond to
           an extra alpha helix and a beta strand when compared
           with TRX. TlpA catalyzes an essential reaction in the
           biogenesis of cytochrome aa3, while ResA and DsbE are
           essential proteins in cytochrome c maturation. Also
           included in this family are proteins containing a
           TlpA-like TRX domain with domain architectures similar
           to E. coli DipZ protein, and the N-terminal TRX domain
           of PilB protein from Neisseria which acts as a disulfide
           reductase that can recylce methionine sulfoxide
           reductases..
          Length = 116

 Score = 25.2 bits (55), Expect = 9.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 125 FSEDGVIDIGAVIADFTAIAINPYPKKEGITFSNIYDTDQ 164
           + +DGV  +G  + D    A+  + KK GITF  + D D 
Sbjct: 48  YKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,967,949
Number of extensions: 96199
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 10
Length of query: 167
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,383,754
Effective search space: 350700320
Effective search space used: 350700320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)