RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780499|ref|YP_003064912.1| hypothetical protein
CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62]
(167 letters)
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics,
joint center for structural genomics, JCSG; 2.15A
{Methylobacillus flagellatus KT} (A:213-409)
Length = 197
Score = 26.4 bits (57), Expect = 2.2
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 119 EPDILPFSEDGV-IDIGAVIADFTAIAINPYPKKEG 153
+L FS+ +D GA I + A I K
Sbjct: 6 RSGLLRFSDSEKXVDCGASIGESLAGLIGVTKGKFE 41
>3bwr_A Capsid protein VP1; SV40, GM1, viral receptor, viral
attachment, ganglioside, polyomaviruses, late protein,
nucleus, virion, viral protein; HET: SIA GAL NGA BGC;
2.25A {Simian virus 40} PDB: 3bwq_A* (A:)
Length = 272
Score = 26.3 bits (58), Expect = 2.5
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 6 NYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
NY Q V + + + D K + ++ VE W D
Sbjct: 142 NYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPD 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.9 bits (57), Expect = 3.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 17/42 (40%)
Query: 35 LAEQLGVMSVESWCADVKLSVWKKVGVRMSGNLYATIIQSCV 76
LA+ VMS+ES +V V+ + G+ M Q V
Sbjct: 2 LAD---VMSIES-LVEV---VFYR-GMTM---------QVAV 26
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A
{Thermotoga maritima} (A:1-65,A:173-219)
Length = 112
Score = 25.5 bits (56), Expect = 3.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 114 VVVIREPDILPFSEDGVIDIGAV 136
+R D+ + GV DIG
Sbjct: 42 CFXVRPFDVPTYLVHGVADIGFC 64
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus;
3.10A {Simian virus 40} (1:1-321)
Length = 321
Score = 25.5 bits (56), Expect = 4.0
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 6 NYSYPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
NY Q V + + + D K + ++ VE W D
Sbjct: 167 NYRTKYPAQTVTPKNATVDSQQMNTDHKAVLDKDNAYPVECWVPD 211
>1ve4_A ATP phosphoribosyltransferase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.20A {Thermus thermophilus}
(A:1-91,A:178-206)
Length = 120
Score = 25.1 bits (55), Expect = 5.0
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAV 136
G ++ +R D+ + + G+ +IG V
Sbjct: 42 GKEGGVALLELRNKDVPIYVDLGIAEIGVV 71
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain,
alternative splicing, cell adhesion, disease mutation,
glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB:
3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* (B:614-690)
Length = 77
Score = 24.7 bits (54), Expect = 6.1
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 76 VITLEPLLSEVEDTLGCIFVPSSS---KFLYPNGDTSGKKNVVVIREPD 121
+ +++ L +D + C + +F Y D+SGK + V+ EP+
Sbjct: 26 IESVKELKDTGKDAVNCTYKNEDDCVVRFQY-YEDSSGKSILYVVEEPE 73
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine
biosynthesis, hiszg, allosteric, evolution; 2.90A
{Lactococcus lactis} (E:1-90,E:178-208)
Length = 121
Score = 24.7 bits (54), Expect = 7.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAV 136
T ++ + D++ F E G++DIG V
Sbjct: 39 KTKDDLQIIFGKPNDVITFLEHGIVDIGFV 68
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His
biosynthesis, PRPP, structural genomics, PSI, protein
structure initiative; HET: AMP HIS; 1.80A {Mycobacterium
tuberculosis H37RV} (A:1-106,A:200-231)
Length = 138
Score = 24.4 bits (53), Expect = 8.4
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 114 VVVIREPDILPFSEDGVIDIGAV 136
+R DI + G +D G
Sbjct: 65 FFFLRPKDIAIYVGSGELDFGIT 87
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA
GAL BGC; 3.65A {Mouse polyomavirus} (A:1-342)
Length = 342
Score = 24.4 bits (53), Expect = 8.5
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 9 YPVSVQAVFSTPMNLKLKADSLDCKKLAEQLGVMSVESWCAD 50
V+++ + M K + + K ++ G+ VE W D
Sbjct: 189 GVVTIKTITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPD 230
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis,
glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia
coli} (A:1-100,A:194-224)
Length = 131
Score = 24.3 bits (53), Expect = 9.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 107 DTSGKKNVVVIREPDILPFSEDGVIDIGAV 136
+ +++ +R+ DI DGV+D+G +
Sbjct: 43 AENMPIDILRVRDDDIPGLVMDGVVDLGII 72
>2vd3_A ATP phosphoribosyltransferase; metal-binding,
glycosyltransferase, HISG, cytoplasm, histidine,
magnesium; HET: HIS; 2.45A {Methanobacterium
thermoautotrophicum} (A:1-90,A:185-213)
Length = 119
Score = 24.3 bits (53), Expect = 9.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 114 VVVIREPDILPFSEDGVIDIGAV 136
V+ R DI F DG D+G
Sbjct: 49 VMFSRAADIPEFVADGAADLGIT 71
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.134 0.393
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,230,282
Number of extensions: 51471
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 15
Length of query: 167
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 85
Effective length of database: 2,184,039
Effective search space: 185643315
Effective search space used: 185643315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)