254780500

254780500

hypothetical protein CLIBASIA_01935

GeneID in NCBI database:8209495Locus tag:CLIBASIA_01935
Protein GI in NCBI database:254780500Protein Accession:YP_003064913.1
Gene range:-(777962, 778441)Protein Length:159aa
Gene description:hypothetical protein
COG prediction:[J] Small protein A (tmRNA-binding)
KEGG prediction:hypothetical protein
SEED prediction:hypothetical protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM1 TM-Helix
TOPPRED1 TM-Helix
HMMTOP1 TM-Helix
MEMSAT1 TM-Helix
MEMSAT_SVM1 TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA
ccEEEEEccccHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHccccccHHHHHHHHcccccEEEEcccccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEHHHHcccccccEEEccccccccccccHHHHHHHHHcccccc
ccEEEEEccHHHcHccHHHHHHHHHHHHHHHHHEEEccccccEEcHHHHHcccccccHHHHHHHccccccccccccccccEEEHEHHHHHHHHHHHcccHHEHHHHHEEEcccccEEEEEEEEEcccccccccccccccccccccHHHHHHcccccccc
mkkilflnnfffgklsfNKALFIIVIGLVVDYHVSygsisgaslDMSAISLVSqgssrshvieslgspsfsilhngnrsqsFYYVSqkkkwfpvkflspKIMEYIVLKITFGEKGVVSSvsmerlpnrrfnpnphtipapiqTADGFLRRLLNPNGRSA
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNrrfnpnphtipapiqtadGFLRRLLNPNGRSA
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA
********NFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISL*S***SRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPN****
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISL*********VIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHV*ESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLN******
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxhhhhhhhhhhhhhhhhhhhhxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA
MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
315122313166 hypothetical protein CKC_02825 [Candidatus Liberibacter 1 2e-32
227821541168 putative outer membrane protein [Sinorhizobium fredii N 1 5e-08
15964972168 hypothetical protein SMc01781 [Sinorhizobium meliloti 1 1 1e-07
150396049168 SmpA/OmlA domain-containing protein [Sinorhizobium medi 1 2e-07
319784149170 SmpA/OmlA domain-containing protein [Mesorhizobium cice 1 1e-06
222085518169 hypothetical protein Arad_1765 [Agrobacterium radiobact 1 3e-06
239831598171 SmpA/OmlA domain-containing protein [Ochrobactrum inter 1 7e-06
260460939171 SmpA/OmlA domain protein [Mesorhizobium opportunistum W 1 8e-06
153009850174 SmpA/OmlA domain-containing protein [Ochrobactrum anthr 1 1e-05
265983875172 SmpA/OmlA domain-containing protein [Brucella sp. 83/13 1 1e-05
>gi|315122313|ref|YP_004062802.1| hypothetical protein CKC_02825 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 166 Back     alignment and organism information
 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 6/160 (3%)

Query: 4   ILFLNNFFFGKLSFNKALFIIVIGLVV--DYHVSYG---SISGASLDMSAISLVSQGSSR 58
           +L LNNF F  L  NK + I ++  +   + HVS+G   S+ G  LD + +SL+ + SSR
Sbjct: 1   MLLLNNFLFKHLFLNKVILIALLLTISMGNLHVSHGEDNSVGGVVLDQALLSLIHRQSSR 60

Query: 59  SHVIESLGSPSFSILHNGNRS-QSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVV 117
            HVI++LGSPSF+I    N   QSFYYVSQKKK FP  FL P I    VLKI FG++G+V
Sbjct: 61  EHVIQTLGSPSFTIFDPHNYGMQSFYYVSQKKKIFPFHFLRPTITNRTVLKIVFGKEGLV 120

Query: 118 SSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGR 157
           S +S++ L +RRFNPN H    PI     F  RLLNP+ +
Sbjct: 121 SKISIQSLKDRRFNPNQHETTVPITKESDFFDRLLNPDKK 160



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|227821541|ref|YP_002825511.1| putative outer membrane protein [Sinorhizobium fredii NGR234] Length = 168 Back     alignment and organism information
>gi|15964972|ref|NP_385325.1| hypothetical protein SMc01781 [Sinorhizobium meliloti 1021] Length = 168 Back     alignment and organism information
>gi|150396049|ref|YP_001326516.1| SmpA/OmlA domain-containing protein [Sinorhizobium medicae WSM419] Length = 168 Back     alignment and organism information
>gi|319784149|ref|YP_004143625.1| SmpA/OmlA domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 170 Back     alignment and organism information
>gi|222085518|ref|YP_002544048.1| hypothetical protein Arad_1765 [Agrobacterium radiobacter K84] Length = 169 Back     alignment and organism information
>gi|239831598|ref|ZP_04679927.1| SmpA/OmlA domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 171 Back     alignment and organism information
>gi|260460939|ref|ZP_05809189.1| SmpA/OmlA domain protein [Mesorhizobium opportunistum WSM2075] Length = 171 Back     alignment and organism information
>gi|153009850|ref|YP_001371065.1| SmpA/OmlA domain-containing protein [Ochrobactrum anthropi ATCC 49188] Length = 174 Back     alignment and organism information
>gi|265983875|ref|ZP_06096610.1| SmpA/OmlA domain-containing protein [Brucella sp. 83/13] Length = 172 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
pfam0435571 pfam04355, SmpA_OmlA, SmpA / OmlA family 1e-04
COG2913147 COG2913, SmpA, Small protein A (tmRNA-binding) [Transla 2e-06
>gnl|CDD|146803 pfam04355, SmpA_OmlA, SmpA / OmlA family Back     alignment and domain information
>gnl|CDD|32737 COG2913, SmpA, Small protein A (tmRNA-binding) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
COG2913147 OlmA Outer membrane lipoprotein OmlA (small protein A) 99.91
PRK11548113 hypothetical protein; Provisional 99.76
pfam0435571 SmpA_OmlA SmpA / OmlA family. Lipoprotein Bacterial out 99.62
PRK11251109 DNA-binding transcriptional activator OsmE; Provisional 97.48
pfam11399102 DUF3192 Protein of unknown function (DUF3192). Some mem 93.72
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11548 hypothetical protein; Provisional Back     alignment and domain information
>pfam04355 SmpA_OmlA SmpA / OmlA family Back     alignment and domain information
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional Back     alignment and domain information
>pfam11399 DUF3192 Protein of unknown function (DUF3192) Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
2kxx_A97 Nmr Structure Of Escherichia Coli Bame, A Lipoprote 2e-07
2km7_A102 Solution Structure Of Bame, A Component Of The Oute 2e-07
2pxg_A118 Nmr Solution Structure Of Omla Length = 118 4e-05
>gi|317454991|pdb|2KXX|A Chain A, Nmr Structure Of Escherichia Coli Bame, A Lipoprotein Component Of The Beta-Barrel Assembly Machinery Complex Length = 97 Back     alignment and structure 
 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 37  GSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKF 96
               G  L  + +S +  G ++  V  +LG+P  S     N     +      +      
Sbjct: 15  DINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEG----- 69

Query: 97  LSPKIMEYIVLKITFGEKGVVSSVSM 122
                +    L +TF   GV++++  
Sbjct: 70  -----VTQQTLTLTFNSSGVLTNIDN 90
>gi|321159573|pdb|2KM7|A Chain A, Solution Structure Of Bame, A Component Of The Outer Membrane Protein Assembly Machinery In Escherichia Coli Length = 102 Back     alignment and structure
>gi|166235374|pdb|2PXG|A Chain A, Nmr Solution Structure Of Omla Length = 118 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
2pxg_A118 Outer membrane protein; two layer alpha/beta plait, two 2e-04
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} Length = 118 Back     alignment and structure
 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 41  GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100
           G  +  +A+  +  G S+  V   LG+PS     +  R   + Y S ++           
Sbjct: 15  GNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLA 65

Query: 101 IMEYIVLKITFGEKGVVSSVSMERLPN 127
             E     + F E   V     +  P+
Sbjct: 66  RTEIKNFTVFF-ENEQVVRWEGDYFPS 91

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
2pxg_A118 Outer membrane protein; two layer alpha/beta plait, two 99.66
2g2u_B165 BLIP, beta-lactamase inhibitory protein; protein-protei 93.78
3gmv_X156 Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha 93.62
3gmv_X156 Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha 92.4
3gmx_B154 BLP; 2-layer alpha/beta sandwich, protein binding; 1.05 94.7
3d4e_A179 Putative beta-lactamase inhibitor protein; NP_721579.1, 93.36
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} Back     alignment and structure
Probab=99.66  E-value=2.1e-16  Score=117.92  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=68.1

Q ss_pred             HCCCCC---CCEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEE
Q ss_conf             435554---21013500387888640489999999998378521224467753048887210000000101211113578
Q gi|254780500|r   30 VDYHVS---YGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIV  106 (159)
Q Consensus        30 ~~~c~~---~~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~V  106 (159)
                      |++|..   ....|||+++++++++|++||||+||.++||+|++.++|++|+|   ||+.+...      ..++++++++
T Consensus         1 L~gC~~iYk~~v~QGn~i~~~~l~~L~~Gmtk~QV~~lLGtP~~~~~f~~~~W---~Yi~~~~~------~~~~~~e~~~   71 (118)
T 2pxg_A            1 MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRW---DYTSTQRV------DRLARTEIKN   71 (118)
T ss_dssp             CCCCCCCCCCCCCTTSTTTSSSTTTTCCCSCHHHHHHHHTSCCCCCTTTCCCE---EEEEEETT------CSSSSCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCE---EEEEEEEC------CCCCEEEEEE
T ss_conf             97546400466676673899999861489999999998589864488678707---99999975------9986368999


Q ss_pred             EEEEECCCCCEEEEEECCCC
Q ss_conf             99999899868432110434
Q gi|254780500|r  107 LKITFGEKGVVSSVSMERLP  126 (159)
Q Consensus       107 l~I~FD~~g~V~nI~~~~L~  126 (159)
                      ++|+||++. |.+++-.-+.
T Consensus        72 l~v~Fd~~~-l~~i~gd~~p   90 (118)
T 2pxg_A           72 FTVFFENEQ-VVRWEGDYFP   90 (118)
T ss_dssp             EEEEESSSS-EEEEEECSSS
T ss_pred             EEEEECCCC-EEEEECCCCC
T ss_conf             999989997-9988888788
>2g2u_B BLIP, beta-lactamase inhibitory protein; protein-protein complex, SHV-1, hydrolase/hydrolase inhibitor complex; 1.60A {Streptomyces clavuligerus} SCOP: d.98.1.1 PDB: 1jtg_B 2b5r_C 2g2w_B 3e2k_C 3e2l_C* 3gmu_B 3c4p_B 3c7v_B 1s0w_C 3c7u_B 3c4o_B 1xxm_C Back     alignment and structure
>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B Back     alignment and structure
>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B Back     alignment and structure
>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A Back     alignment and structure
>3d4e_A Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 159 hypothetical protein CLIBASIA_01935 [Candidatus Li
2pxg_A_118 (A:) Outer membrane protein; two layer alpha/beta 3e-06
>2pxg_A (A:) Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}Length = 118 Back     alignment and structure
 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 41  GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100
           G  +  +A+  +  G S+  V   LG+PS     +  R   + Y S ++           
Sbjct: 15  GNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLA 65

Query: 101 IMEYIVLKITFGEKGVVSSVSMERLPNRRF 130
             E     + F  + VV             
Sbjct: 66  RTEIKNFTVFFENEQVVRWEGDYFPSQDEQ 95

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target159 hypothetical protein CLIBASIA_01935 [Candidatus Liberib
2pxg_A_118 Outer membrane protein; two layer alpha/beta plait 99.78
3gmv_X_156 Beta-lactamase inhibitory protein BLIP-I; 2-layer 97.61
3gmv_X_156 Beta-lactamase inhibitory protein BLIP-I; 2-layer 96.03
3gmx_B_154 BLP; 2-layer alpha/beta sandwich, protein binding; 92.51
3d4e_A_179 Putative beta-lactamase inhibitor protein; NP_7215 97.73
3gmx_B_154 BLP; 2-layer alpha/beta sandwich, protein binding; 95.63
2g2u_B_165 BLIP, beta-lactamase inhibitory protein; protein-p 94.92
3d4e_A_179 Putative beta-lactamase inhibitor protein; NP_7215 93.07
>2pxg_A (A:) Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} Back     alignment and structure
Probab=99.78  E-value=2.1e-19  Score=136.84  Aligned_cols=108  Identities=16%  Similarity=0.090  Sum_probs=90.8

Q ss_pred             HCCCCCC---CEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEE
Q ss_conf             4355542---1013500387888640489999999998378521224467753048887210000000101211113578
Q gi|254780500|r   30 VDYHVSY---GSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIV  106 (159)
Q Consensus        30 ~~~c~~~---~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~V  106 (159)
                      |++|...   ...|||.++++++++|++||||+||..+||+|++.+.|++++   |||+.+...      ..+++.++++
T Consensus         1 Ls~Cs~~y~~~~~qG~~~~~~~l~~i~~Gmtk~qV~~lLGtP~~~~~f~~~~---W~Yv~~~~~------~~~~~~~~~~   71 (118)
T 2pxg_A            1 MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLARTEIKN   71 (118)
T ss_dssp             CCCCCCCCCCCCCTTSTTTSSSTTTTCCCSCHHHHHHHHTSCCCCCTTTCCC---EEEEEEETT------CSSSSCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCE---EEEEEEEEC------CCCCEEEEEE
T ss_conf             9755650146567677489999976058999999999848986337757861---799999964------8985258999


Q ss_pred             EEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHH
Q ss_conf             9999989986843211043456140345415888852243
Q gi|254780500|r  107 LKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADG  146 (159)
Q Consensus       107 l~I~FD~~g~V~nI~~~~L~dg~~~~~~~~~~~~~~~~~~  146 (159)
                      ++|+||++++|+....+.+++++.++..++.|..+.....
T Consensus        72 i~v~Fd~~~~v~~~~~~~~~~~~~i~~~~~~tp~~~~~~~  111 (118)
T 2pxg_A           72 FTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARD  111 (118)
T ss_dssp             EEEEESSSSEEEEEECSSSCCCCCSSCSSCCCCSCCCSCC
T ss_pred             EEEEECCCCEEEEECCCCCCCHHHHHHCCHHHHHCCCCHH
T ss_conf             9999899989988788788712443011402210214123
>3gmv_X (X:) Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B Back     alignment and structure
>3gmv_X (X:) Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B Back     alignment and structure
>3gmx_B (B:) BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A Back     alignment and structure
>3d4e_A (A:) Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} Back     alignment and structure
>3gmx_B (B:) BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A Back     alignment and structure
>2g2u_B (B:) BLIP, beta-lactamase inhibitory protein; protein-protein complex, SHV-1, hydrolase/hydrolase inhibitor complex; 1.60A {Streptomyces clavuligerus} Back     alignment and structure
>3d4e_A (A:) Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} Back     alignment and structure