254780500
hypothetical protein CLIBASIA_01935
GeneID in NCBI database: | 8209495 | Locus tag: | CLIBASIA_01935 |
Protein GI in NCBI database: | 254780500 | Protein Accession: | YP_003064913.1 |
Gene range: | -(777962, 778441) | Protein Length: | 159aa |
Gene description: | hypothetical protein | ||
COG prediction: | [J] Small protein A (tmRNA-binding) | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | |||
315122313 | 166 | hypothetical protein CKC_02825 [Candidatus Liberibacter | 1 | 2e-32 | |
227821541 | 168 | putative outer membrane protein [Sinorhizobium fredii N | 1 | 5e-08 | |
15964972 | 168 | hypothetical protein SMc01781 [Sinorhizobium meliloti 1 | 1 | 1e-07 | |
150396049 | 168 | SmpA/OmlA domain-containing protein [Sinorhizobium medi | 1 | 2e-07 | |
319784149 | 170 | SmpA/OmlA domain-containing protein [Mesorhizobium cice | 1 | 1e-06 | |
222085518 | 169 | hypothetical protein Arad_1765 [Agrobacterium radiobact | 1 | 3e-06 | |
239831598 | 171 | SmpA/OmlA domain-containing protein [Ochrobactrum inter | 1 | 7e-06 | |
260460939 | 171 | SmpA/OmlA domain protein [Mesorhizobium opportunistum W | 1 | 8e-06 | |
153009850 | 174 | SmpA/OmlA domain-containing protein [Ochrobactrum anthr | 1 | 1e-05 | |
265983875 | 172 | SmpA/OmlA domain-containing protein [Brucella sp. 83/13 | 1 | 1e-05 |
>gi|315122313|ref|YP_004062802.1| hypothetical protein CKC_02825 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 166 | Back alignment and organism information |
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Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 101/160 (63%), Gaps = 6/160 (3%) Query: 4 ILFLNNFFFGKLSFNKALFIIVIGLVV--DYHVSYG---SISGASLDMSAISLVSQGSSR 58 +L LNNF F L NK + I ++ + + HVS+G S+ G LD + +SL+ + SSR Sbjct: 1 MLLLNNFLFKHLFLNKVILIALLLTISMGNLHVSHGEDNSVGGVVLDQALLSLIHRQSSR 60 Query: 59 SHVIESLGSPSFSILHNGNRS-QSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVV 117 HVI++LGSPSF+I N QSFYYVSQKKK FP FL P I VLKI FG++G+V Sbjct: 61 EHVIQTLGSPSFTIFDPHNYGMQSFYYVSQKKKIFPFHFLRPTITNRTVLKIVFGKEGLV 120 Query: 118 SSVSMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGR 157 S +S++ L +RRFNPN H PI F RLLNP+ + Sbjct: 121 SKISIQSLKDRRFNPNQHETTVPITKESDFFDRLLNPDKK 160 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227821541|ref|YP_002825511.1| putative outer membrane protein [Sinorhizobium fredii NGR234] Length = 168 | Back alignment and organism information |
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>gi|15964972|ref|NP_385325.1| hypothetical protein SMc01781 [Sinorhizobium meliloti 1021] Length = 168 | Back alignment and organism information |
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>gi|150396049|ref|YP_001326516.1| SmpA/OmlA domain-containing protein [Sinorhizobium medicae WSM419] Length = 168 | Back alignment and organism information |
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>gi|319784149|ref|YP_004143625.1| SmpA/OmlA domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 170 | Back alignment and organism information |
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>gi|222085518|ref|YP_002544048.1| hypothetical protein Arad_1765 [Agrobacterium radiobacter K84] Length = 169 | Back alignment and organism information |
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>gi|239831598|ref|ZP_04679927.1| SmpA/OmlA domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 171 | Back alignment and organism information |
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>gi|260460939|ref|ZP_05809189.1| SmpA/OmlA domain protein [Mesorhizobium opportunistum WSM2075] Length = 171 | Back alignment and organism information |
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>gi|153009850|ref|YP_001371065.1| SmpA/OmlA domain-containing protein [Ochrobactrum anthropi ATCC 49188] Length = 174 | Back alignment and organism information |
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>gi|265983875|ref|ZP_06096610.1| SmpA/OmlA domain-containing protein [Brucella sp. 83/13] Length = 172 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | ||
pfam04355 | 71 | pfam04355, SmpA_OmlA, SmpA / OmlA family | 1e-04 | |
COG2913 | 147 | COG2913, SmpA, Small protein A (tmRNA-binding) [Transla | 2e-06 |
>gnl|CDD|146803 pfam04355, SmpA_OmlA, SmpA / OmlA family | Back alignment and domain information |
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>gnl|CDD|32737 COG2913, SmpA, Small protein A (tmRNA-binding) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | ||
COG2913 | 147 | OlmA Outer membrane lipoprotein OmlA (small protein A) | 99.91 | |
PRK11548 | 113 | hypothetical protein; Provisional | 99.76 | |
pfam04355 | 71 | SmpA_OmlA SmpA / OmlA family. Lipoprotein Bacterial out | 99.62 | |
PRK11251 | 109 | DNA-binding transcriptional activator OsmE; Provisional | 97.48 | |
pfam11399 | 102 | DUF3192 Protein of unknown function (DUF3192). Some mem | 93.72 |
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>PRK11548 hypothetical protein; Provisional | Back alignment and domain information |
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>pfam04355 SmpA_OmlA SmpA / OmlA family | Back alignment and domain information |
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>PRK11251 DNA-binding transcriptional activator OsmE; Provisional | Back alignment and domain information |
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>pfam11399 DUF3192 Protein of unknown function (DUF3192) | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | ||
2kxx_A | 97 | Nmr Structure Of Escherichia Coli Bame, A Lipoprote | 2e-07 | |
2km7_A | 102 | Solution Structure Of Bame, A Component Of The Oute | 2e-07 | |
2pxg_A | 118 | Nmr Solution Structure Of Omla Length = 118 | 4e-05 |
>gi|317454991|pdb|2KXX|A Chain A, Nmr Structure Of Escherichia Coli Bame, A Lipoprotein Component Of The Beta-Barrel Assembly Machinery Complex Length = 97 | Back alignment and structure |
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%) Query: 37 GSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKF 96 G L + +S + G ++ V +LG+P S N + + Sbjct: 15 DINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEG----- 69 Query: 97 LSPKIMEYIVLKITFGEKGVVSSVSM 122 + L +TF GV++++ Sbjct: 70 -----VTQQTLTLTFNSSGVLTNIDN 90 |
>gi|321159573|pdb|2KM7|A Chain A, Solution Structure Of Bame, A Component Of The Outer Membrane Protein Assembly Machinery In Escherichia Coli Length = 102 | Back alignment and structure |
>gi|166235374|pdb|2PXG|A Chain A, Nmr Solution Structure Of Omla Length = 118 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | ||
2pxg_A | 118 | Outer membrane protein; two layer alpha/beta plait, two | 2e-04 |
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} Length = 118 | Back alignment and structure |
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Score = 40.2 bits (94), Expect = 2e-04 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 10/87 (11%) Query: 41 GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100 G + +A+ + G S+ V LG+PS + R + Y S ++ Sbjct: 15 GNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLA 65 Query: 101 IMEYIVLKITFGEKGVVSSVSMERLPN 127 E + F E V + P+ Sbjct: 66 RTEIKNFTVFF-ENEQVVRWEGDYFPS 91 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | ||
2pxg_A | 118 | Outer membrane protein; two layer alpha/beta plait, two | 99.66 | |
2g2u_B | 165 | BLIP, beta-lactamase inhibitory protein; protein-protei | 93.78 | |
3gmv_X | 156 | Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha | 93.62 | |
3gmv_X | 156 | Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha | 92.4 | |
3gmx_B | 154 | BLP; 2-layer alpha/beta sandwich, protein binding; 1.05 | 94.7 | |
3d4e_A | 179 | Putative beta-lactamase inhibitor protein; NP_721579.1, | 93.36 |
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} | Back alignment and structure |
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Probab=99.66 E-value=2.1e-16 Score=117.92 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=68.1 Q ss_pred HCCCCC---CCEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEE Q ss_conf 435554---21013500387888640489999999998378521224467753048887210000000101211113578 Q gi|254780500|r 30 VDYHVS---YGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIV 106 (159) Q Consensus 30 ~~~c~~---~~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~V 106 (159) |++|.. ....|||+++++++++|++||||+||.++||+|++.++|++|+| ||+.+... ..++++++++ T Consensus 1 L~gC~~iYk~~v~QGn~i~~~~l~~L~~Gmtk~QV~~lLGtP~~~~~f~~~~W---~Yi~~~~~------~~~~~~e~~~ 71 (118) T 2pxg_A 1 MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRW---DYTSTQRV------DRLARTEIKN 71 (118) T ss_dssp CCCCCCCCCCCCCTTSTTTSSSTTTTCCCSCHHHHHHHHTSCCCCCTTTCCCE---EEEEEETT------CSSSSCEEEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCE---EEEEEEEC------CCCCEEEEEE T ss_conf 97546400466676673899999861489999999998589864488678707---99999975------9986368999 Q ss_pred EEEEECCCCCEEEEEECCCC Q ss_conf 99999899868432110434 Q gi|254780500|r 107 LKITFGEKGVVSSVSMERLP 126 (159) Q Consensus 107 l~I~FD~~g~V~nI~~~~L~ 126 (159) ++|+||++. |.+++-.-+. T Consensus 72 l~v~Fd~~~-l~~i~gd~~p 90 (118) T 2pxg_A 72 FTVFFENEQ-VVRWEGDYFP 90 (118) T ss_dssp EEEEESSSS-EEEEEECSSS T ss_pred EEEEECCCC-EEEEECCCCC T ss_conf 999989997-9988888788 |
>2g2u_B BLIP, beta-lactamase inhibitory protein; protein-protein complex, SHV-1, hydrolase/hydrolase inhibitor complex; 1.60A {Streptomyces clavuligerus} SCOP: d.98.1.1 PDB: 1jtg_B 2b5r_C 2g2w_B 3e2k_C 3e2l_C* 3gmu_B 3c4p_B 3c7v_B 1s0w_C 3c7u_B 3c4o_B 1xxm_C | Back alignment and structure |
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>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B | Back alignment and structure |
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>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B | Back alignment and structure |
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>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A | Back alignment and structure |
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>3d4e_A Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Li | ||
2pxg_A_ | 118 | (A:) Outer membrane protein; two layer alpha/beta | 3e-06 |
>2pxg_A (A:) Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}Length = 118 | Back alignment and structure |
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Score = 46.0 bits (109), Expect = 3e-06 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%) Query: 41 GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100 G + +A+ + G S+ V LG+PS + R + Y S ++ Sbjct: 15 GNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLA 65 Query: 101 IMEYIVLKITFGEKGVVSSVSMERLPNRRF 130 E + F + VV Sbjct: 66 RTEIKNFTVFFENEQVVRWEGDYFPSQDEQ 95 |
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 159 | hypothetical protein CLIBASIA_01935 [Candidatus Liberib | ||
2pxg_A_ | 118 | Outer membrane protein; two layer alpha/beta plait | 99.78 | |
3gmv_X_ | 156 | Beta-lactamase inhibitory protein BLIP-I; 2-layer | 97.61 | |
3gmv_X_ | 156 | Beta-lactamase inhibitory protein BLIP-I; 2-layer | 96.03 | |
3gmx_B_ | 154 | BLP; 2-layer alpha/beta sandwich, protein binding; | 92.51 | |
3d4e_A_ | 179 | Putative beta-lactamase inhibitor protein; NP_7215 | 97.73 | |
3gmx_B_ | 154 | BLP; 2-layer alpha/beta sandwich, protein binding; | 95.63 | |
2g2u_B_ | 165 | BLIP, beta-lactamase inhibitory protein; protein-p | 94.92 | |
3d4e_A_ | 179 | Putative beta-lactamase inhibitor protein; NP_7215 | 93.07 |
>2pxg_A (A:) Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV} | Back alignment and structure |
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Probab=99.78 E-value=2.1e-19 Score=136.84 Aligned_cols=108 Identities=16% Similarity=0.090 Sum_probs=90.8 Q ss_pred HCCCCCC---CEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEE Q ss_conf 4355542---1013500387888640489999999998378521224467753048887210000000101211113578 Q gi|254780500|r 30 VDYHVSY---GSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIV 106 (159) Q Consensus 30 ~~~c~~~---~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~V 106 (159) |++|... ...|||.++++++++|++||||+||..+||+|++.+.|++++ |||+.+... ..+++.++++ T Consensus 1 Ls~Cs~~y~~~~~qG~~~~~~~l~~i~~Gmtk~qV~~lLGtP~~~~~f~~~~---W~Yv~~~~~------~~~~~~~~~~ 71 (118) T 2pxg_A 1 MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLARTEIKN 71 (118) T ss_dssp CCCCCCCCCCCCCTTSTTTSSSTTTTCCCSCHHHHHHHHTSCCCCCTTTCCC---EEEEEEETT------CSSSSCEEEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCE---EEEEEEEEC------CCCCEEEEEE T ss_conf 9755650146567677489999976058999999999848986337757861---799999964------8985258999 Q ss_pred EEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHH Q ss_conf 9999989986843211043456140345415888852243 Q gi|254780500|r 107 LKITFGEKGVVSSVSMERLPNRRFNPNPHTIPAPIQTADG 146 (159) Q Consensus 107 l~I~FD~~g~V~nI~~~~L~dg~~~~~~~~~~~~~~~~~~ 146 (159) ++|+||++++|+....+.+++++.++..++.|..+..... T Consensus 72 i~v~Fd~~~~v~~~~~~~~~~~~~i~~~~~~tp~~~~~~~ 111 (118) T 2pxg_A 72 FTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARD 111 (118) T ss_dssp EEEEESSSSEEEEEECSSSCCCCCSSCSSCCCCSCCCSCC T ss_pred EEEEECCCCEEEEECCCCCCCHHHHHHCCHHHHHCCCCHH T ss_conf 9999899989988788788712443011402210214123 |
>3gmv_X (X:) Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B | Back alignment and structure |
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>3gmv_X (X:) Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B | Back alignment and structure |
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>3gmx_B (B:) BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A | Back alignment and structure |
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>3d4e_A (A:) Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} | Back alignment and structure |
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>3gmx_B (B:) BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A | Back alignment and structure |
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>2g2u_B (B:) BLIP, beta-lactamase inhibitory protein; protein-protein complex, SHV-1, hydrolase/hydrolase inhibitor complex; 1.60A {Streptomyces clavuligerus} | Back alignment and structure |
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>3d4e_A (A:) Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans} | Back alignment and structure |
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