Query gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs 128 out of 302
Neff 5.3
Searched_HMMs 23785
Date Tue May 31 22:11:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780500.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pxg_A Outer membrane protein; 99.7 2.1E-16 8.8E-21 117.9 7.8 87 30-126 1-90 (118)
2 3gmx_B BLP; 2-layer alpha/beta 94.7 0.065 2.7E-06 30.7 6.0 24 45-68 5-28 (154)
3 2g2u_B BLIP, beta-lactamase in 93.8 0.054 2.3E-06 31.2 4.0 77 42-133 2-83 (165)
4 3gmv_X Beta-lactamase inhibito 93.6 0.15 6.1E-06 28.6 5.9 73 44-129 3-75 (156)
5 3d4e_A Putative beta-lactamase 93.4 0.082 3.4E-06 30.1 4.3 25 44-68 106-130 (179)
6 3gmv_X Beta-lactamase inhibito 92.4 0.11 4.5E-06 29.4 3.8 71 43-125 78-155 (156)
7 2h4a_A YRAM (HI1655); perplasm 55.5 7.5 0.00032 18.3 2.9 29 108-136 291-320 (325)
8 2w3z_A Putative deacetylase; P 33.9 7.8 0.00033 18.2 0.2 12 103-114 105-116 (311)
9 3kog_A Putative pore-forming t 17.1 31 0.0013 14.6 0.7 15 72-86 115-129 (256)
10 1yc1_A HSP 86, heat shock prot 14.3 58 0.0024 13.0 1.7 20 54-73 124-143 (264)
No 1
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=99.66 E-value=2.1e-16 Score=117.92 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=68.1
Q ss_pred HCCCCC---CCEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEE
Q ss_conf 435554---21013500387888640489999999998378521224467753048887210000000101211113578
Q gi|254780500|r 30 VDYHVS---YGSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIV 106 (159)
Q Consensus 30 ~~~c~~---~~~~~G~~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~V 106 (159)
|++|.. ....|||+++++++++|++||||+||.++||+|++.++|++|+| ||+.+... ..++++++++
T Consensus 1 L~gC~~iYk~~v~QGn~i~~~~l~~L~~Gmtk~QV~~lLGtP~~~~~f~~~~W---~Yi~~~~~------~~~~~~e~~~ 71 (118)
T 2pxg_A 1 MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRW---DYTSTQRV------DRLARTEIKN 71 (118)
T ss_dssp CCCCCCCCCCCCCTTSTTTSSSTTTTCCCSCHHHHHHHHTSCCCCCTTTCCCE---EEEEEETT------CSSSSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCE---EEEEEEEC------CCCCEEEEEE
T ss_conf 97546400466676673899999861489999999998589864488678707---99999975------9986368999
Q ss_pred EEEEECCCCCEEEEEECCCC
Q ss_conf 99999899868432110434
Q gi|254780500|r 107 LKITFGEKGVVSSVSMERLP 126 (159)
Q Consensus 107 l~I~FD~~g~V~nI~~~~L~ 126 (159)
++|+||++. |.+++-.-+.
T Consensus 72 l~v~Fd~~~-l~~i~gd~~p 90 (118)
T 2pxg_A 72 FTVFFENEQ-VVRWEGDYFP 90 (118)
T ss_dssp EEEEESSSS-EEEEEECSSS
T ss_pred EEEEECCCC-EEEEECCCCC
T ss_conf 999989997-9988888788
No 2
>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} PDB: 3gmy_A
Probab=94.70 E-value=0.065 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=14.2
Q ss_pred CHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 878886404899999999983785
Q gi|254780500|r 45 DMSAISLVSQGSSRSHVIESLGSP 68 (159)
Q Consensus 45 d~~~i~~i~~g~tk~~V~~~LG~P 68 (159)
..+..++|+.|||.+||.++||.-
T Consensus 5 T~ekf~kIk~GMTy~eV~~ilG~e 28 (154)
T 3gmx_B 5 TPERYNKIQFGMDRTLVWQLAGAD 28 (154)
T ss_dssp CHHHHHHCCTTCBHHHHHHHHTHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 877864102267799999984888
No 3
>2g2u_B BLIP, beta-lactamase inhibitory protein; protein-protein complex, SHV-1, hydrolase/hydrolase inhibitor complex; 1.60A {Streptomyces clavuligerus} SCOP: d.98.1.1 PDB: 1jtg_B 2b5r_C 2g2w_B 3e2k_C 3e2l_C* 3gmu_B 3c4p_B 3c7v_B 1s0w_C 3c7u_B 3c4o_B 1xxm_C
Probab=93.78 E-value=0.054 Score=31.21 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHCCC--CCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEEC---CCCC
Q ss_conf 003878886404899999999983785--21224467753048887210000000101211113578999998---9986
Q gi|254780500|r 42 ASLDMSAISLVSQGSSRSHVIESLGSP--SFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFG---EKGV 116 (159)
Q Consensus 42 ~~id~~~i~~i~~g~tk~~V~~~LG~P--s~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD---~~g~ 116 (159)
+.+..+...+|+.|||.+||..+||.+ +..+...++. .+|+. ++... -..-...|. .++.
T Consensus 2 ~~iT~ekF~kIk~GmT~~eV~~IlG~e~~~~~~s~~~~i--~~~~~--~w~d~-----------~~~~~~~it~~~~n~k 66 (165)
T 2g2u_B 2 GVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSI--HCRGH--AAGDY-----------YAYATFGFTSAAADAK 66 (165)
T ss_dssp CSCCHHHHHHSCTTCBHHHHHHHHCGGGEECSGGGTTSE--EEEEE--EETTE-----------EEEEEEEESSSSTTCB
T ss_pred CCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCE--EEEEE--ECCCC-----------CCCCCCEEEEEECCCE
T ss_conf 814888873420489999999985977554566646866--89998--74578-----------8765506899851876
Q ss_pred EEEEEECCCCCCCEECC
Q ss_conf 84321104345614034
Q gi|254780500|r 117 VSSVSMERLPNRRFNPN 133 (159)
Q Consensus 117 V~nI~~~~L~dg~~~~~ 133 (159)
+.+-..++|..++-.++
T Consensus 67 ~~~K~~~gL~~~~~~~v 83 (165)
T 2g2u_B 67 VDSKSQEKLLAPSAPTL 83 (165)
T ss_dssp EEEEEEESSCCCSBCCC
T ss_pred EEEEHHHHCCCCCCCCC
T ss_conf 66420111014788756
No 4
>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B
Probab=93.62 E-value=0.15 Score=28.60 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=42.4
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCCCEEEEEEC
Q ss_conf 38788864048999999999837852122446775304888721000000010121111357899999899868432110
Q gi|254780500|r 44 LDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSVSME 123 (159)
Q Consensus 44 id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g~V~nI~~~ 123 (159)
+..+..++|+.|||.++|.++||.+...+.-++-+. ..|- +. .+. ----...+.|.+++.|-+....
T Consensus 3 ~t~ekf~kIk~Gmt~~eV~~ilG~e~~~~~~~~~~~-~iy~----W~-------~~d-~~~~~~~~~f~~~~k~i~K~~~ 69 (156)
T 3gmv_X 3 FSAEKYEQIQFGMTFDEVWEIGGGEAACDTGGVIGD-SILC----FT-------ESG-DYAPYGGFSFTDEGELWSKRNE 69 (156)
T ss_dssp CCHHHHHHCCTTCBHHHHHHHHTHHHHEECSGGGTT-SEEE----ES-------SSS-TTCCEEEEEECTTSBEEEEEEE
T ss_pred CCHHHHHCEECCCCHHHHHHHHCCCCCCCCCCCCCC-EEEE----EE-------CCC-CCCEEEEEEEECCCEEEEEHHC
T ss_conf 476765213037889999998688986565677664-5999----86-------489-8752789998039888752003
Q ss_pred CCCCCC
Q ss_conf 434561
Q gi|254780500|r 124 RLPNRR 129 (159)
Q Consensus 124 ~L~dg~ 129 (159)
+|..++
T Consensus 70 gl~~~~ 75 (156)
T 3gmv_X 70 YLYKAK 75 (156)
T ss_dssp SSSCCS
T ss_pred CCCCCC
T ss_conf 754577
No 5
>3d4e_A Putative beta-lactamase inhibitor protein; NP_721579.1, structural genomics, joint center for structural genomics, JCSG; 1.40A {Streptococcus mutans}
Probab=93.36 E-value=0.082 Score=30.11 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=11.6
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 3878886404899999999983785
Q gi|254780500|r 44 LDMSAISLVSQGSSRSHVIESLGSP 68 (159)
Q Consensus 44 id~~~i~~i~~g~tk~~V~~~LG~P 68 (159)
+..+..++|+.||+-+||.++||+|
T Consensus 106 IT~e~y~ki~~GMtYdeVk~iLGep 130 (179)
T 3d4e_A 106 IGKEDYDELKIGESYKKIVEKLGEP 130 (179)
T ss_dssp BCHHHHHHCCTTCBHHHHHHHHCCC
T ss_pred CCHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 3999985213799899999882798
No 6
>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta sandwich, protein binding; HET: TAM; 1.80A {Streptomyces exfoliatus} PDB: 3gmw_B
Probab=92.40 E-value=0.11 Score=29.43 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=49.8
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC-------CCCCCEEEEEEEEEECCCHHCCCCEEEEEEEEEEEECCCC
Q ss_conf 038788864048999999999837852122446-------7753048887210000000101211113578999998998
Q gi|254780500|r 43 SLDMSAISLVSQGSSRSHVIESLGSPSFSILHN-------GNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKG 115 (159)
Q Consensus 43 ~id~~~i~~i~~g~tk~~V~~~LG~Ps~~~~f~-------~n~~~~~YYi~~k~~~~~~af~~pkvier~Vl~I~FD~~g 115 (159)
.+.....++|+.|||-+||.++||+|...+.-. ...|..+||....+...+ -=..++|- +|
T Consensus 78 ~itl~~Yn~i~~GmTy~~V~a~lG~~~~~s~~~~~~~~~~~ag~~~~~~~~~~~~~~g-----------~n~~ltF~-ng 145 (156)
T 3gmv_X 78 SVKLSHYNRTALGMTEAQLWAAVPKDSCVSQGESYPNWPAKTGFEEKYYCAAATGLFP-----------PSASFHLT-DG 145 (156)
T ss_dssp CCCHHHHTTCCTTCBHHHHHHHSCGGGEEEEEEECTTTTSCTTCEEEEEEESSSSSSC-----------CEEEEEEE-TT
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCCEEHHHCCCCCCCCCCCEEEEEECCCCCCCC-----------CCEEEEEE-CC
T ss_conf 3469997200048859999987189982421220676534555336799713467778-----------73799986-89
Q ss_pred CEEEEEECCC
Q ss_conf 6843211043
Q gi|254780500|r 116 VVSSVSMERL 125 (159)
Q Consensus 116 ~V~nI~~~~L 125 (159)
.|++....+|
T Consensus 146 kLt~KsQ~~L 155 (156)
T 3gmv_X 146 VLTYRYQRSL 155 (156)
T ss_dssp EEEEEEEESC
T ss_pred EEEEEEECCC
T ss_conf 5766410177
No 7
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=55.46 E-value=7.5 Score=18.30 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=23.4
Q ss_pred EEEECCCCCEE-EEEECCCCCCCEECCCCC
Q ss_conf 99998998684-321104345614034541
Q gi|254780500|r 108 KITFGEKGVVS-SVSMERLPNRRFNPNPHT 136 (159)
Q Consensus 108 ~I~FD~~g~V~-nI~~~~L~dg~~~~~~~~ 136 (159)
.++||++|.+. .+..+..+||+++|+...
T Consensus 291 ~i~fd~~G~~~r~~~~~~~~~G~~v~v~d~ 320 (325)
T 2h4a_A 291 ILSADTNCNVERDMTWYQYQDGAIVPVVDH 320 (325)
T ss_dssp EEEECTTCBEEEECEEEEEETTEEEECC--
T ss_pred EEEECCCCCCCCCCEEEEEECCEEEECCCC
T ss_conf 899999998741636999989989987044
No 8
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=33.92 E-value=7.8 Score=18.21 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.7
Q ss_pred EEEEEEEEECCC
Q ss_conf 357899999899
Q gi|254780500|r 103 EYIVLKITFGEK 114 (159)
Q Consensus 103 er~Vl~I~FD~~ 114 (159)
..++++++|||.
T Consensus 105 ~~K~v~LTFDDG 116 (311)
T 2w3z_A 105 KQKLVFLTFDDG 116 (311)
T ss_dssp -CCEEEEEEEEE
T ss_pred CCCEEEEEEECC
T ss_conf 888799977179
No 9
>3kog_A Putative pore-forming toxin; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.85A {Bacteroides vulgatus atcc 8482}
Probab=17.11 E-value=31 Score=14.61 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.8
Q ss_pred CCCCCCCCCEEEEEE
Q ss_conf 244677530488872
Q gi|254780500|r 72 ILHNGNRSQSFYYVS 86 (159)
Q Consensus 72 ~~f~~n~~~~~YYi~ 86 (159)
+.|-+|..+||||+.
T Consensus 115 ~g~~~N~~dY~~~~t 129 (256)
T 3kog_A 115 SGFKNNTSDYWYYIT 129 (256)
T ss_dssp CCCEEECSSBCEEEE
T ss_pred CCCCCCCCEEEEEEE
T ss_conf 652257730899998
No 10
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=14.33 E-value=58 Score=12.96 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCCCCCC
Q ss_conf 89999999998378521224
Q gi|254780500|r 54 QGSSRSHVIESLGSPSFSIL 73 (159)
Q Consensus 54 ~g~tk~~V~~~LG~Ps~~~~ 73 (159)
+|||++++..-||+...++.
T Consensus 124 iGMt~~el~~~lgtIa~Sg~ 143 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGT 143 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCH
T ss_pred CCCCHHHHHHHCCCHHCCCC
T ss_conf 87779999976165001463
Done!