RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780500|ref|YP_003064913.1| hypothetical protein
CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>gnl|CDD|151839 pfam11399, DUF3192, Protein of unknown function (DUF3192).  Some
          members in this family of proteins are annotated as
          lipoproteins however this cannot be confirmed.
          Length = 102

 Score = 31.4 bits (72), Expect = 0.10
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 49 ISLVSQGSSRSHVIESLGSPSFS--ILHNGNRSQSFYYVSQKKK 90
          I+ +S G S+  V+  LG+  FS     +  + Q  +Y +Q  K
Sbjct: 28 IAKLSLGQSKDQVLTLLGTADFSEAKTKDDKQYQVLFYRTQHVK 71


>gnl|CDD|151949 pfam11512, Atu4866, Agrobacterium tumefaciens protein Atu4866.
           Atu4866 is a protein with unknown function from
           Agrobacterium tumefaciens however the structure has been
           determined. Atu4866 adopts a streptavidin-like fold and
           has a beta-barrel/sandwich which is formed by eight
           antiparallel beta-strands. Atu4866 has a potential
           ligand-binding site where is has a stretch of conserved
           residues on the surface.
          Length = 78

 Score = 28.1 bits (63), Expect = 0.93
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 143 TADGFLRRLLNPNGR 157
           TADG +R  L PNGR
Sbjct: 12  TADGRIRHELLPNGR 26


>gnl|CDD|184916 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau;
           Provisional.
          Length = 584

 Score = 26.8 bits (59), Expect = 2.9
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 8/40 (20%)

Query: 78  RSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVV 117
           RS++ +Y        P + L P+ M  ++ +I   E  VV
Sbjct: 166 RSRTHHY--------PFRLLPPRTMRALIARICEQEGVVV 197


>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
           lyase/N-acetylglutamate synthase; Provisional.
          Length = 614

 Score = 26.7 bits (59), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 56  SSRSHVIESLGSPSFSILH 74
           S R HV+E +   S S+LH
Sbjct: 230 SDRDHVMELMSVASISMLH 248


>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases.  This family
           consists of L-diaminobutyric acid transaminases. This
           general designation covers both 2.6.1.76
           (diaminobutyrate-2-oxoglutarate transaminase, which uses
           glutamate as the amino donor in DABA biosynthesis), and
           2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
           uses alanine as the amino donor). Most members with
           known function are 2.6.1.76, and at least some
           annotations as 2.6.1.46 in current databases at time of
           model revision are incorrect. A distinct branch of this
           family contains examples of 2.6.1.76 nearly all of which
           are involved in ectoine biosynthesis. A related enzyme
           is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
           called GABA transaminase. These enzymes all are
           pyridoxal phosphate-containing class III
           aminotransferase.
          Length = 442

 Score = 26.5 bits (58), Expect = 3.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 14  KLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSHVI 62
           K +F +AL  I+    +DY + +   SGA    +AI L    + R++VI
Sbjct: 84  KDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVI 132


>gnl|CDD|102219 PRK06163, PRK06163, hypothetical protein; Provisional.
          Length = 202

 Score = 25.9 bits (57), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 51 LVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPV 94
          LV++      VI  +G+ +F +   G R Q+FY +      FP+
Sbjct: 22 LVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFYMLGSMGLAFPI 65


>gnl|CDD|130429 TIGR01362, KDO8P_synth, 3-deoxy-8-phosphooctulonate synthase.  In
           Gram-negative bacteria, this is the first step in the
           biosynthesis of 3-deoxy-D-manno-octulosonate, part of
           the oligosaccharide core of lipopolysaccharide.
          Length = 258

 Score = 25.4 bits (56), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 95  KFLSPKIMEYIVLKITF-GEKGVV 117
           +FLSP  M+ +V K+   G K ++
Sbjct: 125 QFLSPWDMKNVVEKVLSTGNKNIL 148


>gnl|CDD|178080 PLN02461, PLN02461, Probable pyruvate kinase.
          Length = 511

 Score = 25.3 bits (56), Expect = 7.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 45  DMSAISLVSQGSSRSHVIESLGSPSFSIL 73
           D  A+S V +GS    V + LG  + SIL
Sbjct: 209 DFIALSFVRKGSDLVEVRKVLGEHAKSIL 237


>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase.  This model
           represents a family of bacterial oxidoreductases with
           covalently linked FAD, closely related to two different
           eukaryotic oxidases, L-gulonolactone oxidase (EC
           1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase
           (EC 1.1.3.37) from Saccharomyces cerevisiae.
          Length = 419

 Score = 24.8 bits (54), Expect = 9.2
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 104 YIVLKITFGEKGVVSSVSMERLPNRR 129
           Y+  +++ G  GV+S V+++ +   R
Sbjct: 152 YLAARVSLGALGVISQVTLQTVALFR 177


>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
          Length = 455

 Score = 24.9 bits (55), Expect = 9.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 56  SSRSHVIESLGSPSFSILH 74
           S R HV+E L   S S++H
Sbjct: 230 SDRDHVLELLSDASISMVH 248


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,619,891
Number of extensions: 153432
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 18
Length of query: 159
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,136,185
Effective search space: 301941505
Effective search space used: 301941505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)