RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780500|ref|YP_003064913.1| hypothetical protein
CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)



>2pxg_A Outer membrane protein; two layer alpha/beta plait, two
           layer sandwich architecture; NMR {Xanthomonas axonopodis
           PV} (A:)
          Length = 118

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 41  GASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100
           G  +  +A+  +  G S+  V   LG+PS     +  R   + Y S ++           
Sbjct: 15  GNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQR---WDYTSTQRV------DRLA 65

Query: 101 IMEYIVLKITFGEKGVVSSVSMERLPNRRF 130
             E     + F  + VV             
Sbjct: 66  RTEIKNFTVFFENEQVVRWEGDYFPSQDEQ 95


>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation- regulated
           kinase 2; KI-(Y)-phosphorylation regulated kinase 2,
           PSK-H2; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB:
           3k2l_A* (A:299-375)
          Length = 77

 Score = 28.2 bits (63), Expect = 0.57
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 61  VIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPK 100
           +IE LG PS  +L    R+++F       ++  V  LS  
Sbjct: 13  MIELLGMPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDG 52


>2jmb_A AGR_L_42P, hypothetical protein ATU4866; structural
           genomics, ontario centre for structural proteomics,
           OCSP, unknown function; NMR {Agrobacterium tumefaciens
           str} (A:)
          Length = 79

 Score = 26.3 bits (58), Expect = 2.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 143 TADGFLRRLLNPNGR 157
           TADG +R+ L PNGR
Sbjct: 11  TADGRIRQELLPNGR 25


>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
           aminotransferase, structural genomics; HET: MSE LLP PE4;
           1.75A {Porphyromonas gingivalis W83} (A:1-54,A:334-437)
          Length = 158

 Score = 24.8 bits (54), Expect = 6.2
 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 7/34 (20%)

Query: 32  YHVSYGSISGASL-------DMSAISLVSQGSSR 58
           + V Y     + L          AI+L + GS R
Sbjct: 95  FTVGYKGXDSSKLIEKFVRYGXCAITLKTTGSKR 128


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,204,134
Number of extensions: 49486
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 5
Length of query: 159
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 77
Effective length of database: 2,184,039
Effective search space: 168171003
Effective search space used: 168171003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)