BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780500|ref|YP_003064913.1| hypothetical protein
CLIBASIA_01935 [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780500|ref|YP_003064913.1| hypothetical protein CLIBASIA_01935 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score =  319 bits (817), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSH 60
           MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSH
Sbjct: 1   MKKILFLNNFFFGKLSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRSH 60

Query: 61  VIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSV 120
           VIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSV
Sbjct: 61  VIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYIVLKITFGEKGVVSSV 120

Query: 121 SMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA 159
           SMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA
Sbjct: 121 SMERLPNRRFNPNPHTIPAPIQTADGFLRRLLNPNGRSA 159


>gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate hydrolase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 27.3 bits (59), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 15/85 (17%)

Query: 46  MSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQKKKWFPVKFLSPKIMEYI 105
           + +ISL+ QG S          P+  I  NG       YV Q +KWF  +F      E  
Sbjct: 61  IKSISLLGQGDSYIQ----YDFPAHCIQENG-------YVGQMQKWFAFRF-QGLTSEIC 108

Query: 106 VLKITFG---EKGVVSSVSMERLPN 127
           V +  +G   E    + VS+   PN
Sbjct: 109 VDRTAYGYESEFDAWTWVSLWDTPN 133


>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 333

 Score = 24.6 bits (52), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 117 VSSVSMERLPNRRFNPNPHTIPAPIQTADGF 147
            +  +++ +     NP  H IP  I+TA G+
Sbjct: 173 AAGATLDSIIGEWHNPETHVIPLAIKTAMGY 203


>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score = 22.3 bits (46), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 88  KKKWFPVKFLSPKIMEYIVLKI 109
           K K+FP+K    K  E+ ++KI
Sbjct: 369 KTKFFPMKCFLSKRFEHTIMKI 390


>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 199

 Score = 21.9 bits (45), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 15  LSFNKALFIIVIGLVVDYHVSYGSISGASLDMSAISLVSQGSSRS 59
            + N A  +I    ++DYH         +L  S I++ SQ    S
Sbjct: 63  CTANTANILIPSRKIIDYHRLLEQKKNHNLQYSLINIPSQNKQES 107


>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 608

 Score = 21.2 bits (43), Expect = 8.7,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 37  GSISGASLDMSAISLVSQGSSRSHVIESLGSPSFSILHNGNRSQSFYYVSQK 88
           G+I  A    +   L ++ +S  H IE +      I+ N +R +  ++ SQ+
Sbjct: 65  GNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQ 116


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,613
Number of Sequences: 1233
Number of extensions: 4309
Number of successful extensions: 11
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 328,796
effective HSP length: 67
effective length of query: 92
effective length of database: 246,185
effective search space: 22649020
effective search space used: 22649020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)