Query gi|254780501|ref|YP_003064914.1| hypothetical protein CLIBASIA_01940 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 31 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 09:52:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780501.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1gg3a2 b.55.1.5 (A:188-279) E 21.7 17 0.0012 17.2 1.4 22 10-31 25-46 (92) 2 d1ef1a3 d.15.1.4 (A:4-87) Moes 9.3 51 0.0037 15.0 1.1 10 1-10 39-48 (84) 3 d2fnaa1 a.4.5.11 (A:284-356) H 8.7 9.7 0.00071 18.3 -2.8 15 13-29 13-27 (73) 4 d1gg3a3 d.15.1.4 (A:1-81) Eryt 5.0 70 0.0051 14.4 -0.0 10 1-10 39-48 (81) 5 d1opsa_ b.85.1.1 (A:) Type III 4.5 1.2E+02 0.0086 13.3 0.9 14 16-29 49-62 (64) 6 d1qopa_ c.1.2.4 (A:) Trp synth 4.3 1.3E+02 0.0094 13.2 0.9 17 5-22 172-188 (267) 7 d1vk3a4 d.139.1.1 (A:508-603) 4.2 82 0.006 14.1 -0.2 10 19-28 21-30 (96) 8 d1s7ia_ d.58.4.9 (A:) Hypothet 4.1 1.4E+02 0.01 13.0 1.0 13 1-13 7-19 (124) 9 d1ujpa_ c.1.2.4 (A:) Trp synth 3.4 1.3E+02 0.0098 13.1 0.4 17 5-22 169-185 (271) 10 d1geqa_ c.1.2.4 (A:) Trp synth 3.2 2E+02 0.014 12.3 1.1 15 5-20 158-172 (248) No 1 >d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Probab=21.73 E-value=17 Score=17.17 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=16.5 Q ss_pred EEECCCCCCCEEEHHHHHCCCC Q ss_conf 7513588651120325403779 Q gi|254780501|r 10 NIAQKGSTGSRILWEEIKNASF 31 (31) Q Consensus 10 niaqkgstgsrilweeiknasf 31 (31) .|-+.+..-+++.|.+|++.|| T Consensus 25 ~vy~~~~~i~~f~W~~I~~isf 46 (92) T d1gg3a2 25 LVYKDKLRINRFPWPKVLKISY 46 (92) T ss_dssp EEESSSCCCEEEEGGGCCEEEE T ss_pred EEEECCCEEEEEEHHHEEEEEE T ss_conf 9997998888886578679866 No 2 >d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Probab=9.27 E-value=51 Score=15.00 Aligned_cols=10 Identities=40% Similarity=0.910 Sum_probs=8.0 Q ss_pred CCEEEEEEEE Q ss_conf 9455799997 Q gi|254780501|r 1 MKYFGLIYLN 10 (31) Q Consensus 1 mkyfgliyln 10 (31) +.||||-|.+ T Consensus 39 ~dYFGL~y~d 48 (84) T d1ef1a3 39 VWFFGLQYQD 48 (84) T ss_dssp GGGEEEEEEB T ss_pred CCCCEEEEEC T ss_conf 5644189999 No 3 >d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Probab=8.73 E-value=9.7 Score=18.25 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=9.3 Q ss_pred CCCCCCCEEEHHHHHCC Q ss_conf 35886511203254037 Q gi|254780501|r 13 QKGSTGSRILWEEIKNA 29 (31) Q Consensus 13 qkgstgsrilweeikna 29 (31) ..-+-|+| |.+||+. T Consensus 13 kaia~G~r--Ws~IK~y 27 (73) T d2fnaa1 13 RTLSKCGK--WSDVKRA 27 (73) T ss_dssp HHHTTCBC--HHHHHHH T ss_pred HHHHCCCC--HHHHHHH T ss_conf 99984496--9999999 No 4 >d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Probab=4.98 E-value=70 Score=14.37 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=8.0 Q ss_pred CCEEEEEEEE Q ss_conf 9455799997 Q gi|254780501|r 1 MKYFGLIYLN 10 (31) Q Consensus 1 mkyfgliyln 10 (31) +.||||-|.+ T Consensus 39 ~~YFGL~y~d 48 (81) T d1gg3a3 39 EDYFGLAIWD 48 (81) T ss_dssp CCSSSCEEEC T ss_pred CCCCEEEEEC T ss_conf 3432189978 No 5 >d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]} Probab=4.52 E-value=1.2e+02 Score=13.34 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=10.7 Q ss_pred CCCCEEEHHHHHCC Q ss_conf 86511203254037 Q gi|254780501|r 16 STGSRILWEEIKNA 29 (31) Q Consensus 16 stgsrilweeikna 29 (31) ..+..|+|+.+||- T Consensus 49 ~~d~~L~~d~ik~~ 62 (64) T d1opsa_ 49 AKGQTLMPNMVKTY 62 (64) T ss_dssp CTTCBCCGGGBTTT T ss_pred CCCCCCCHHHHHCC T ss_conf 69885189994122 No 6 >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Probab=4.26 E-value=1.3e+02 Score=13.17 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=12.6 Q ss_pred EEEEEEEECCCCCCCEEE Q ss_conf 799997513588651120 Q gi|254780501|r 5 GLIYLNIAQKGSTGSRIL 22 (31) Q Consensus 5 gliylniaqkgstgsril 22 (31) |.||+ +++.|-||+|-. T Consensus 172 gFiY~-vs~~GvTG~~~~ 188 (267) T d1qopa_ 172 GYTYL-LSRSGVTGAENR 188 (267) T ss_dssp SCEEE-ESSSSCCCSSSC T ss_pred HHHHH-HCCCCCCCCCCC T ss_conf 35565-103356775323 No 7 >d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 {Thermotoga maritima [TaxId: 2336]} Probab=4.17 E-value=82 Score=14.05 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=6.8 Q ss_pred CEEEHHHHHC Q ss_conf 1120325403 Q gi|254780501|r 19 SRILWEEIKN 28 (31) Q Consensus 19 srilweeikn 28 (31) ..+||.||+. T Consensus 21 EK~LW~eI~K 30 (96) T d1vk3a4 21 EKELWRAIRK 30 (96) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 8 >d1s7ia_ d.58.4.9 (A:) Hypothetical protein PA1349 {Pseudomonas aeruginosa [TaxId: 287]} Probab=4.15 E-value=1.4e+02 Score=13.00 Aligned_cols=13 Identities=54% Similarity=0.935 Sum_probs=10.3 Q ss_pred CCEEEEEEEEEEC Q ss_conf 9455799997513 Q gi|254780501|r 1 MKYFGLIYLNIAQ 13 (31) Q Consensus 1 mkyfgliylniaq 13 (31) |||+-|+|-|-.. T Consensus 7 Mkyllli~~~~~~ 19 (124) T d1s7ia_ 7 MKYLCLIYFDEAK 19 (124) T ss_dssp EEEEEEEEECGGG T ss_pred CCEEEEEEECCCC T ss_conf 7179999968333 No 9 >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} Probab=3.42 E-value=1.3e+02 Score=13.08 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=12.1 Q ss_pred EEEEEEEECCCCCCCEEE Q ss_conf 799997513588651120 Q gi|254780501|r 5 GLIYLNIAQKGSTGSRIL 22 (31) Q Consensus 5 gliylniaqkgstgsril 22 (31) |.||+ ++..|.||+|-. T Consensus 169 GFIY~-Vs~~GvTG~~~~ 185 (271) T d1ujpa_ 169 GFVYA-VSVTGVTGMRER 185 (271) T ss_dssp SCEEE-ECC--------- T ss_pred CHHHH-HCCCCCCCCCCC T ss_conf 12112-035676675433 No 10 >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=3.21 E-value=2e+02 Score=12.34 Aligned_cols=15 Identities=47% Similarity=1.043 Sum_probs=0.0 Q ss_pred EEEEEEEECCCCCCCE Q ss_conf 7999975135886511 Q gi|254780501|r 5 GLIYLNIAQKGSTGSR 20 (31) Q Consensus 5 gliylniaqkgstgsr 20 (31) |.||+ +...|-||+| T Consensus 158 gFiY~-vs~~GvTG~~ 172 (248) T d1geqa_ 158 GFVYL-VSLYGTTGAR 172 (248) T ss_dssp SEEEE-ECCC------ T ss_pred CEEEE-EECCCCCCCC T ss_conf 72899-8414665420 Done!