HHsearch alignment for GI: 254780502 and conserved domain: PRK00464
>PRK00464 nrdR transcriptional regulator NrdR; Validated.
Probab=97.40 E-value=0.0011 Score=46.27 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=47.8
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 16469802897322486799999999998704877643210799999999999999985066789852114548999999
Q gi|254780502|r 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSL 106 (954)
Q Consensus 27 ~~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~L 106 (954)
T Consensus 47 ~~l~VvKrdg~re~Fdr~Kl~~gi~~A~~K--Rpv~------~~~ie~~v~~Ie~~l~~~~~--~EI~S~~IGe~Vm~~L 116 (149)
T PRK00464 47 VPPLVIKKDGRREPFDREKLLRGLLRACEK--RPVS------SEQIEAAVSRIERQLRASGE--REVPSKEIGELVMEEL 116 (149)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHH
T ss_conf 265799459987777799999999999638--9989------99999999999999998388--8755999999999988
Q ss_pred HH
Q ss_conf 86
Q gi|254780502|r 107 MQ 108 (954)
Q Consensus 107 M~ 108 (954)
T Consensus 117 k~ 118 (149)
T PRK00464 117 KK 118 (149)
T ss_pred HH
T ss_conf 62