HHsearch alignment for GI: 254780502 and conserved domain: PRK08115
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated.
Probab=100.00 E-value=0 Score=1187.78 Aligned_cols=560 Identities=26% Similarity=0.392 Sum_probs=494.0
Q ss_pred HHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC-CCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 899999999654164545---3689999999997433035861122210022-2232110254-7664135899998999
Q gi|254780502|r 317 PQAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT-VPDDLYGIFGALQENA 391 (954)
Q Consensus 317 pQ~~~mrVA~~la~~e~~---~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~-~qlsSCfl~~-v~Dsl~~I~~~~~~~a 391 (954)
T Consensus 130 ~e~~~kr~a~~la~ve~~~~~~~~w~e~fy~~l~~~~fiPaGRil~GAGt~~~vT~fNC~Vm~~i~Ds~~gI~~~~ke~~ 209 (857)
T PRK08115 130 YEQIAKRNATGLAAVEKTEEKRKEWFEKFYKELASLNFIPAGRVLYGAGSKKEVTFFNCYVMPFVKDSREGISEHRKQVM 209 (857)
T ss_pred HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999988756311113999999999999999974587754103325788870579843773877765788999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 99851054441012443111200012787642889999998999997404666772478983567889999730257873
Q gi|254780502|r 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 (954)
Q Consensus 392 ~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~ 471 (954)
T Consensus 210 ~~m~~GGGvG~nfStLRPkga~v~gv~g~aSGpvSfm~v~~~~~~~v~qgGsRRGA~M~~L~~dHPDI~eFI~aK~~~~~ 289 (857)
T PRK08115 210 EIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNPR 289 (857)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCHH
T ss_conf 99852785366777558798833246886777412999999998999861764000455313779629999997413657
Q ss_pred H-----------------------------------------------------------------------HHHHHCCC
Q ss_conf 0-----------------------------------------------------------------------23320232
Q gi|254780502|r 472 D-----------------------------------------------------------------------RRRTHDMN 480 (954)
Q Consensus 472 ~-----------------------------------------------------------------------~~r~~~~~ 480 (954)
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~y~~~~p~~Lt~~N 369 (857)
T PRK08115 290 ILRYLLENTHDELIKKAVKDKLNFTPLSQEEEAMYQAIVNYKNIPGHGGFDTAVIKEAENKLRAGGTYTVNNPDFLTGAN 369 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 77665412430667776543015675104566655432012345554543123344455432136643345733235642
Q ss_pred HHHCCCHHHHHHHHCCCCEEEEECCC---CCCCCCCCCCCHHHH--HHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 02034879999852128747871011---444100134437899--8778752104886057786688999999999988
Q gi|254780502|r 481 TANWIPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 (954)
Q Consensus 481 ~av~i~D~Fm~~v~~~~~w~Lf~P~~---~~~L~d~~g~~fe~~--Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~e 555 (954)
T Consensus 370 iSV~vtdeFMeAV~~D~~~~L~fp~~~~~~~~~~~~y~~~W~~~gdv~eW~~~g--~~vkvyrtikAreLW~~I~~~Aty 447 (857)
T PRK08115 370 ISVCLTKEFMEAVENDEMYELRFPDVEKYTKEEMAIYNKEWHNVGDVREWEKMG--YPVKVYRTIKAKELWNLINICATY 447 (857)
T ss_pred EEEEECHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCC--CCCEEEEEEEHHHHHHHHHHHCCC
T ss_conf 589867999999976997154358754432122223210001345520122137--653278886299999999985044
Q ss_pred HCCCEEEEECHHHCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 288127833112022212-466703404675200136654433211125540686254--34479888558999999997
Q gi|254780502|r 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVL 632 (954)
Q Consensus 556 tG~P~i~f~D~~N~~~p~-~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~--~~~~D~~~l~~~v~~avr~L 632 (954)
T Consensus 448 ~AEPGviFiDriN~~nNl~~y~e~I~ATNPCGEQPLpPYgs----CNLGSINLakfV~~~~~~~Dwd~L~~~V~~AVRfL 523 (857)
T PRK08115 448 SAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAPYSV----CNLAAINLANFVDKHTKTIDYEKLKNTVEVGVRMQ 523 (857)
T ss_pred CCCCCEEEHHHHHHHCCHHHHCCEEEECCCCCCCCCCCCCE----EECHHEEHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57996786152131156165276037507887877898661----05634029987076678559999999999999876
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 65311210001888886443310002111188999972963233788999999999985779997898753117788766
Q gi|254780502|r 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 (954)
Q Consensus 633 DnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~ 712 (954)
T Consensus 524 DNVID~n~yPL~ei~~~ak~~RRIGLGVMGLAD~Li~LGi~YgSeEA~~lae~Vm~~I~~~Ay~aSveLAkErG~FP~fd 603 (857)
T PRK08115 524 DNVIDATPYFLEENKKQALGERRVGLGVMGLHDLLIYCEKKYGSEEGNKLVDEIFETIATTAYRTSIELAKEKGSFPFLV 603 (857)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 73002778962999999984574152312099999983998699999999999999999999999999997008886765
Q ss_pred CCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEE
Q ss_conf 78121387624466300552253345402102728999999984120443011077436877838898847560120345
Q gi|254780502|r 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 (954)
Q Consensus 713 gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r 792 (954)
T Consensus 604 as~~~e~~~~re~----------fl~sg~~k~lpedlre~I~k~GiRNa~ltTIAPTGTISliAgvSSGIEPvFA~~Y~R 673 (857)
T PRK08115 604 GVTDEETARLRER----------FIQTGYMKKMPEDIRQAILKTGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYFR 673 (857)
T ss_pred CCCCCCCHHHHHH----------HHCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 3111232023555----------411334554879999999754965002345078658998855067737676315898
Q ss_pred ECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEE
Q ss_conf 32676136646589998998589868999999851996277644886788650522206889999999852063005232
Q gi|254780502|r 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 (954)
Q Consensus 793 ~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS 872 (954)
T Consensus 674 ~v~~g~f~ev~~~~v~e~~~~~~~~---------------~----~~~LPe~FVTA~DIsPedHVrMQAA~QkwVDsSIS 734 (857)
T PRK08115 674 SGRLGKFIEVKADIVQEYLDIHPEA---------------D----ENHLPEWFVSAMDLKPEAHADVQCIIQRWIDSSIS 734 (857)
T ss_pred EECCCCCEEECHHHHHHHHHHCCCC---------------C----HHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 3214776020179999999975878---------------9----34575716671759999999999988644034010
Q ss_pred EEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HH
Q ss_conf 04754-89998999999999997298679796588411-11
Q gi|254780502|r 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SV 911 (954)
Q Consensus 873 ~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~-~~ 911 (954)
T Consensus 735 KTINlPndATvEDV~~vY~~AY~~GCKGVTVYRDGSR~~QV 775 (857)
T PRK08115 735 KTVNAPKGYTVEQVEKVYERLYRGGAKGGTVYVDGSRDAQV 775 (857)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 43328898899999999999997699779994278776115