HHsearch alignment for GI: 254780502 and conserved domain: PRK08332
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated.
Probab=100.00 E-value=0 Score=1253.96 Aligned_cols=472 Identities=28% Similarity=0.517 Sum_probs=437.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCC-CCHHHHHH
Q ss_conf 44410124431112000127876428899999989999974046667724789835678899997302578-73023320
Q gi|254780502|r 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTH 477 (954)
Q Consensus 399 GiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~-G~~~~r~~ 477 (954)
T Consensus 755 nTGfsFSrLRPkGd~V~STgGvASGPVSFMRvfDAatetIKQGGtRRGAnMGILrVDHPDIeEFI~AKeke~g~~~L--s 832 (1748)
T PRK08332 755 NTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNVL--S 832 (1748)
T ss_pred CCCCCEECCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCC--C
T ss_conf 48853021067898604778733675357878776353776357703430588846998799999861115675602--2
Q ss_pred CCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHC
Q ss_conf 23202034879999852128747871011444100134437899877875210488605778668899999999998828
Q gi|254780502|r 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 (954)
Q Consensus 478 ~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG 557 (954)
T Consensus 833 NFNISV~VTDeFMeAVe~d~ey~LinPrT---------------------------GeVv~~V~ArELF~~Ia~~AW~~g 885 (1748)
T PRK08332 833 NFNISVGIWEDFWEALKEGKKYPLINPRT---------------------------GEKVKEIDPKSLFEELAYMAWAKA 885 (1748)
T ss_pred CCEEEEEECHHHHHHHHCCCCCCCCCCCC---------------------------CCEEEEECHHHHHHHHHHHHHHCC
T ss_conf 31455650699999986499776525788---------------------------855678778999999999998618
Q ss_pred CCEEEEECHHHCCCCCCCC--CEEEECCCCC----------------CCC------------------------------
Q ss_conf 8127833112022212466--7034046752----------------001------------------------------
Q gi|254780502|r 558 HPWITFKDPCNIRSPQQHV--GVVHSSNLCT----------------EIT------------------------------ 589 (954)
Q Consensus 558 ~P~i~f~D~~N~~~p~~~~--g~I~~sNlC~----------------Ei~------------------------------ 589 (954)
T Consensus 886 DPGVIF~DrINr~N~l~~a~ggrIeATNPCVTGDT~VlT~eG~iqvrEL~~lakErG~~~~~~v~Gi~~eg~p~~~~~e~ 965 (1748)
T PRK08332 886 DPGVIFFDVINRRNVLEKAKGEKIRATNPCVVGDTRILTPEGYIKAEEIFSLAKERGKKEAVAVEGIAEEGEPYAYSVEI 965 (1748)
T ss_pred CCCEEEEECCHHCCCCCCCCCCEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 99768741101027998667872444699885762685377625299999876532652134313522467764432312
Q ss_pred -CC-----------------------------CCC----------C----------------------------------
Q ss_conf -36-----------------------------654----------4----------------------------------
Q gi|254780502|r 590 -LN-----------------------------SSS----------E---------------------------------- 595 (954)
Q Consensus 590 -l~-----------------------------~~~----------~---------------------------------- 595 (954)
T Consensus 966 llpgee~~~~~t~~g~~~~~~d~~~vpa~~fkTG~KpVyrLrTrEGyEIRlTaDHrVmt~~GWv~A~dLKpGDkIvL~~~ 1045 (1748)
T PRK08332 966 LLPGEEEVEYETVHGKALAIADPVAVPAYVWKVGKKKVARVKTKEGYEITATLDHKLMTPEGWKEVGELKEGDEILLPRF 1045 (1748)
T ss_pred CCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCCCCEEHHHCCCCCEEEECCC
T ss_conf 36631111010003543223665556410001465358999943854898569962652135378613899998984665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780502|r 596 -------------------------------------------------------------------------------- 595 (954)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (954)
T Consensus 1046 ~~e~~fGse~~~Ee~aylLGwLVGDG~L~v~dk~a~~~f~~e~e~~~A~~~~~il~~~~g~r~~phR~~~~i~l~vRge~ 1125 (1748)
T PRK08332 1046 EIEEDFGSESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEDIAVKIRDILAKHFGIKAELHRYGNQIKLGVRGEA 1125 (1748)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
T ss_conf 55544453323432213578883254000277336886064101123477889999863101465334645663003699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780502|r 596 -------------------------------------------------------------------------------- 595 (954)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (954)
T Consensus 1126 ~R~l~si~~~~eKrVPE~I~r~sse~~raFLRGLFDADGtV~KGvSIRLaSSsl~LLr~VQrLLLrFGI~SkIYerR~~~ 1205 (1748)
T PRK08332 1126 YRWLENIMGNNEKRIPEIIYRLKPREIAAFLRGLFSADGYVDKDMAIRLTSKDRELLRDVQDLLLLFGILSKIYEKPYES 1205 (1748)
T ss_pred HHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99999743764355887887058899999985440477732378358722278899999999998638602442155555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780502|r 596 -------------------------------------------------------------------------------- 595 (954)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (954)
T Consensus 1206 ~f~~~~k~Gg~R~Y~~ka~hELVIS~en~~rFAE~IGF~~~K~akLs~rK~~~er~~atVeSvE~~G~E~VYDltVPg~H 1285 (1748)
T PRK08332 1206 EFHYTTKDGEERIYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLKKTKIDEPIVTVESVEVLGEEIVYDFTVPEHH 1285 (1748)
T ss_pred CCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCC
T ss_conf 52225999975651466625899727308999998186377788876554035665136788874475025641256543
Q ss_pred ------------------CCCCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf ------------------3321112554068625434-----47988855899999999765311210001888886443
Q gi|254780502|r 596 ------------------ETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 (954)
Q Consensus 596 ------------------e~~vCnL~SiNL~~~v~~~-----~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~ 652 (954)
T Consensus 1286 aFiANGiVVHNCGEqPL~pyEsCNLGSINLa~fVk~de~G~~~fDwe~l~~~Vr~avRFLDNVIDvN~yPLp~I~e~tk~ 1365 (1748)
T PRK08332 1286 MYISNGFMSHNCGEEPLYEYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDRNTKL 1365 (1748)
T ss_pred EEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 37645658834767777887644433013887723444677434689999999999888886410024883578899865
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHH
Q ss_conf 31000211118899997296323378899999999998577999789875311778876678121387624466300552
Q gi|254780502|r 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 (954)
Q Consensus 653 ~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~ 732 (954)
T Consensus 1366 tRKIGLGvMGlADlLikLGIPYnSeEg~~fa~kvM~fI~~~A~~aS~eLAkERG~FPlfe~S~Y~~g~~PveG------- 1438 (1748)
T PRK08332 1366 TRRIGVGMMGLADALFKLGIPYNSEEGFDFMRKATEYLTFYAYKRSVEAAKERGPFPLYDKTEYKDGELPVEG------- 1438 (1748)
T ss_pred HCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCC-------
T ss_conf 0302400556999999738987868999999999999999999999999980699998402205566677566-------
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf 25334540210272899999998412044301107743687783889884756012034532676136646589998998
Q gi|254780502|r 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 (954)
Q Consensus 733 ~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~ 812 (954)
T Consensus 1439 ---~y~~e~~~~~wd~l~~ei~~~gvRNAtvTTIAPTGTISmIAdtSSGIEPiFALay~R~Vt~Gel~~VNp~fe~~Lk~ 1515 (1748)
T PRK08332 1439 ---FYHPEIWNLPWDELVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKK 1515 (1748)
T ss_pred ---CCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHH
T ss_conf ---65422214546889998740354420145567876357750677786743466789984057169975899999987
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHH
Q ss_conf 58986899999985199627764488678865052220688999999985206300523204754-89998999999999
Q gi|254780502|r 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 (954)
Q Consensus 813 ~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~ 891 (954)
T Consensus 1516 ~GlyseELm~kIae~~GSv~Gl~evPEeikrVFVTAmDIsP~dHl~MQAAfQkyvDnAISKTINmPndATvEDVk~vYll 1595 (1748)
T PRK08332 1516 RGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQANIQLWLTDSASKTINMINDATVEDVKAAYLI 1595 (1748)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 38885999999997468747844489887855577225897899999999988732655233059987899999999999
Q ss_pred HHHCCCCEEEEECCCCCH
Q ss_conf 997298679796588411
Q gi|254780502|r 892 AWLMGLKTTYYLRSRSAT 909 (954)
Q Consensus 892 Aw~~GlKt~yy~R~~s~~ 909 (954)
T Consensus 1596 Ay~LGcKGVTVYRDGSrs 1613 (1748)
T PRK08332 1596 ARFLGCKGVTVYRDGSLS 1613 (1748)
T ss_pred HHHCCCCEEEEEECCCCC
T ss_conf 998299579996158752