HHsearch alignment for GI: 254780502 and conserved domain: PRK08332

>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated.
Probab=100.00  E-value=0  Score=1253.96  Aligned_cols=472  Identities=28%  Similarity=0.517  Sum_probs=437.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCC-CCHHHHHH
Q ss_conf             44410124431112000127876428899999989999974046667724789835678899997302578-73023320
Q gi|254780502|r  399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTH  477 (954)
Q Consensus       399 GiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~-G~~~~r~~  477 (954)
T Consensus       755 nTGfsFSrLRPkGd~V~STgGvASGPVSFMRvfDAatetIKQGGtRRGAnMGILrVDHPDIeEFI~AKeke~g~~~L--s  832 (1748)
T PRK08332        755 NTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNVL--S  832 (1748)
T ss_pred             CCCCCEECCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCC--C
T ss_conf             48853021067898604778733675357878776353776357703430588846998799999861115675602--2


Q ss_pred             CCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHC
Q ss_conf             23202034879999852128747871011444100134437899877875210488605778668899999999998828
Q gi|254780502|r  478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG  557 (954)
Q Consensus       478 ~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG  557 (954)
T Consensus       833 NFNISV~VTDeFMeAVe~d~ey~LinPrT---------------------------GeVv~~V~ArELF~~Ia~~AW~~g  885 (1748)
T PRK08332        833 NFNISVGIWEDFWEALKEGKKYPLINPRT---------------------------GEKVKEIDPKSLFEELAYMAWAKA  885 (1748)
T ss_pred             CCEEEEEECHHHHHHHHCCCCCCCCCCCC---------------------------CCEEEEECHHHHHHHHHHHHHHCC
T ss_conf             31455650699999986499776525788---------------------------855678778999999999998618


Q ss_pred             CCEEEEECHHHCCCCCCCC--CEEEECCCCC----------------CCC------------------------------
Q ss_conf             8127833112022212466--7034046752----------------001------------------------------
Q gi|254780502|r  558 HPWITFKDPCNIRSPQQHV--GVVHSSNLCT----------------EIT------------------------------  589 (954)
Q Consensus       558 ~P~i~f~D~~N~~~p~~~~--g~I~~sNlC~----------------Ei~------------------------------  589 (954)
T Consensus       886 DPGVIF~DrINr~N~l~~a~ggrIeATNPCVTGDT~VlT~eG~iqvrEL~~lakErG~~~~~~v~Gi~~eg~p~~~~~e~  965 (1748)
T PRK08332        886 DPGVIFFDVINRRNVLEKAKGEKIRATNPCVVGDTRILTPEGYIKAEEIFSLAKERGKKEAVAVEGIAEEGEPYAYSVEI  965 (1748)
T ss_pred             CCCEEEEECCHHCCCCCCCCCCEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             99768741101027998667872444699885762685377625299999876532652134313522467764432312


Q ss_pred             -CC-----------------------------CCC----------C----------------------------------
Q ss_conf             -36-----------------------------654----------4----------------------------------
Q gi|254780502|r  590 -LN-----------------------------SSS----------E----------------------------------  595 (954)
Q Consensus       590 -l~-----------------------------~~~----------~----------------------------------  595 (954)
T Consensus       966 llpgee~~~~~t~~g~~~~~~d~~~vpa~~fkTG~KpVyrLrTrEGyEIRlTaDHrVmt~~GWv~A~dLKpGDkIvL~~~ 1045 (1748)
T PRK08332        966 LLPGEEEVEYETVHGKALAIADPVAVPAYVWKVGKKKVARVKTKEGYEITATLDHKLMTPEGWKEVGELKEGDEILLPRF 1045 (1748)
T ss_pred             CCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCCCCEEHHHCCCCCEEEECCC
T ss_conf             36631111010003543223665556410001465358999943854898569962652135378613899998984665


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780502|r  596 --------------------------------------------------------------------------------  595 (954)
Q Consensus       596 --------------------------------------------------------------------------------  595 (954)
                                                                                                      
T Consensus      1046 ~~e~~fGse~~~Ee~aylLGwLVGDG~L~v~dk~a~~~f~~e~e~~~A~~~~~il~~~~g~r~~phR~~~~i~l~vRge~ 1125 (1748)
T PRK08332       1046 EIEEDFGSESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEDIAVKIRDILAKHFGIKAELHRYGNQIKLGVRGEA 1125 (1748)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
T ss_conf             55544453323432213578883254000277336886064101123477889999863101465334645663003699


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780502|r  596 --------------------------------------------------------------------------------  595 (954)
Q Consensus       596 --------------------------------------------------------------------------------  595 (954)
                                                                                                      
T Consensus      1126 ~R~l~si~~~~eKrVPE~I~r~sse~~raFLRGLFDADGtV~KGvSIRLaSSsl~LLr~VQrLLLrFGI~SkIYerR~~~ 1205 (1748)
T PRK08332       1126 YRWLENIMGNNEKRIPEIIYRLKPREIAAFLRGLFSADGYVDKDMAIRLTSKDRELLRDVQDLLLLFGILSKIYEKPYES 1205 (1748)
T ss_pred             HHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             99999743764355887887058899999985440477732378358722278899999999998638602442155555


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780502|r  596 --------------------------------------------------------------------------------  595 (954)
Q Consensus       596 --------------------------------------------------------------------------------  595 (954)
                                                                                                      
T Consensus      1206 ~f~~~~k~Gg~R~Y~~ka~hELVIS~en~~rFAE~IGF~~~K~akLs~rK~~~er~~atVeSvE~~G~E~VYDltVPg~H 1285 (1748)
T PRK08332       1206 EFHYTTKDGEERIYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLKKTKIDEPIVTVESVEVLGEEIVYDFTVPEHH 1285 (1748)
T ss_pred             CCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCC
T ss_conf             52225999975651466625899727308999998186377788876554035665136788874475025641256543


Q ss_pred             ------------------CCCCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             ------------------3321112554068625434-----47988855899999999765311210001888886443
Q gi|254780502|r  596 ------------------ETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT  652 (954)
Q Consensus       596 ------------------e~~vCnL~SiNL~~~v~~~-----~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~  652 (954)
T Consensus      1286 aFiANGiVVHNCGEqPL~pyEsCNLGSINLa~fVk~de~G~~~fDwe~l~~~Vr~avRFLDNVIDvN~yPLp~I~e~tk~ 1365 (1748)
T PRK08332       1286 MYISNGFMSHNCGEEPLYEYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDRNTKL 1365 (1748)
T ss_pred             EEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             37645658834767777887644433013887723444677434689999999999888886410024883578899865


Q ss_pred             HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHH
Q ss_conf             31000211118899997296323378899999999998577999789875311778876678121387624466300552
Q gi|254780502|r  653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV  732 (954)
Q Consensus       653 ~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~  732 (954)
T Consensus      1366 tRKIGLGvMGlADlLikLGIPYnSeEg~~fa~kvM~fI~~~A~~aS~eLAkERG~FPlfe~S~Y~~g~~PveG------- 1438 (1748)
T PRK08332       1366 TRRIGVGMMGLADALFKLGIPYNSEEGFDFMRKATEYLTFYAYKRSVEAAKERGPFPLYDKTEYKDGELPVEG------- 1438 (1748)
T ss_pred             HCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCC-------
T ss_conf             0302400556999999738987868999999999999999999999999980699998402205566677566-------


Q ss_pred             CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf             25334540210272899999998412044301107743687783889884756012034532676136646589998998
Q gi|254780502|r  733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ  812 (954)
Q Consensus       733 ~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~  812 (954)
T Consensus      1439 ---~y~~e~~~~~wd~l~~ei~~~gvRNAtvTTIAPTGTISmIAdtSSGIEPiFALay~R~Vt~Gel~~VNp~fe~~Lk~ 1515 (1748)
T PRK08332       1439 ---FYHPEIWNLPWDELVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKK 1515 (1748)
T ss_pred             ---CCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHH
T ss_conf             ---65422214546889998740354420145567876357750677786743466789984057169975899999987


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHH
Q ss_conf             58986899999985199627764488678865052220688999999985206300523204754-89998999999999
Q gi|254780502|r  813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ  891 (954)
Q Consensus       813 ~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~  891 (954)
T Consensus      1516 ~GlyseELm~kIae~~GSv~Gl~evPEeikrVFVTAmDIsP~dHl~MQAAfQkyvDnAISKTINmPndATvEDVk~vYll 1595 (1748)
T PRK08332       1516 RGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQANIQLWLTDSASKTINMINDATVEDVKAAYLI 1595 (1748)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             38885999999997468747844489887855577225897899999999988732655233059987899999999999


Q ss_pred             HHHCCCCEEEEECCCCCH
Q ss_conf             997298679796588411
Q gi|254780502|r  892 AWLMGLKTTYYLRSRSAT  909 (954)
Q Consensus       892 Aw~~GlKt~yy~R~~s~~  909 (954)
T Consensus      1596 Ay~LGcKGVTVYRDGSrs 1613 (1748)
T PRK08332       1596 ARFLGCKGVTVYRDGSLS 1613 (1748)
T ss_pred             HHHCCCCEEEEEECCCCC
T ss_conf             998299579996158752