HHsearch alignment for GI: 254780502 and conserved domain: PRK09103

>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated.
Probab=100.00  E-value=0  Score=1723.54  Aligned_cols=720  Identities=28%  Similarity=0.431  Sum_probs=675.2

Q ss_pred             CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHH
Q ss_conf             42289805997602598999999999851666689999999897303789888999999999999874418-77146779
Q gi|254780502|r  143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTA  221 (954)
Q Consensus       143 ~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~lydgitt~el~~~li~aA~~Li~~e-Pdy~~vAa  221 (954)
T Consensus         3 ~~m~ViKRdG~~E~~~~~KI~~~i~~a~~gL~~v~~~~i~~~~~~~lyDGitT~eid~~li~~aa~lis~~~Pdy~~lAa   82 (761)
T PRK09103          3 QNLLVTKRDGSTERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA   82 (761)
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             87289938998715789999999999957887799899999998535799859999999999999984555856999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             99999999986210033310110446777547888998665576778777751773999997641210112898999999
Q gi|254780502|r  222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL  301 (954)
Q Consensus       222 Rlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL  301 (954)
T Consensus        83 Rl~~~~l~K~~~~~f~~~----------~~-~~~~~~~~~~g~y~~~ll~~y~~~~~~~L~~~I~~~rD~~f~y~g~~tL  151 (761)
T PRK09103         83 RLAIFHLRKKAYGQFEPP----------AL-YDHVVKLVEMGKYDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQL  151 (761)
T ss_pred             HHHHHHHHHHHHCCCCHH----------HH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf             999999998753667807----------89-9999986634524399999987999999985658023357780899999


Q ss_pred             HHHHHHC--CCCCEEECHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             9976211--489275388999999996541645--453689999999997433035861122210022223211025476
Q gi|254780502|r  302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP  377 (954)
Q Consensus       302 ~~rYllk--~~~~~~E~pQ~~~mrVA~~la~~e--~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~  377 (954)
T Consensus       152 ~~~YL~k~~~~~~i~E~PQ~~~MrVA~~l~~~~~~~~~~~~~~~~Y~~lS~~~~~~aTPtl~nagt~~~qlsSCfl~~v~  231 (761)
T PRK09103        152 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECG  231 (761)
T ss_pred             HHHHCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             98445465568944315699999999987235850216999999999985674047982211789887667637985377


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             64135899998999998510544410124431112000127876428899999989999974046667724789835678
Q gi|254780502|r  378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI  457 (954)
Q Consensus       378 Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~  457 (954)
T Consensus       232 Dsl~~I~~t~~~~a~~sk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpf~kv~n~~~~~v~QgG~R~GA~~vyl~~wH~  311 (761)
T PRK09103        232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPIWHL  311 (761)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf             64767999999999997536834110203578997105787623886438999999999997479867633898467651


Q ss_pred             CHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCHHHHHHHHHHHHCCCCC
Q ss_conf             899997302578730233202320203487999985212874787101144410013---44378998778752104886
Q gi|254780502|r  458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEI  534 (954)
Q Consensus       458 Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~---g~~fe~~Y~~~e~~~~~~~~  534 (954)
T Consensus       312 DI~~Fl~lK~n~G~e~~R~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~l~d~~~~d~~efe~~Y~~~e~~~~~---  388 (761)
T PRK09103        312 EVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDDSI---  388 (761)
T ss_pred             CHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---
T ss_conf             59999973255785465432178020559999999971998156555336314554444068899999974302663---


Q ss_pred             EEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCC-CCCCCEEEECCCCCCCCCCCCC--------CCCCCCCHHHH
Q ss_conf             05778668899999999998828812783311202221-2466703404675200136654--------43321112554
Q gi|254780502|r  535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSI  605 (954)
Q Consensus       535 ~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p-~~~~g~I~~sNlC~Ei~l~~~~--------~e~~vCnL~Si  605 (954)
T Consensus       389 -~kk~i~AreL~~~il~~~~ETG~Pyi~f~D~~N~~~p~~~~~g~I~~SNLC~EI~lpt~p~~~~~d~~ge~avCnL~Si  467 (761)
T PRK09103        389 -RKKRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAF  467 (761)
T ss_pred             -CCEEEEHHHHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf             -3048649999999999975038874153576774387788654264057501314677774213577773310233452


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             06862543447988855899999999765311210001888886443310002111188999972963233788999999
Q gi|254780502|r  606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE  685 (954)
Q Consensus       606 NL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~  685 (954)
T Consensus       468 NL~~~-----~~~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~~i~y~S~eA~~l~~~  542 (761)
T PRK09103        468 NLGAI-----NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGVRYSDGSANNLTHK  542 (761)
T ss_pred             CCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             64333-----6788899999999999999872056885899999860576031066899999987988699999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99998577999789875311778876678121387624466300552253345402102728999999984120443011
Q gi|254780502|r  686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA  765 (954)
Q Consensus       686 i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~a  765 (954)
T Consensus       543 i~e~i~y~a~~aS~eLAkErG~~p~f~~S~~~~G~lp~d~~~~~~---~~-~~~~~~~~dW~~Lr~~i~~~GlRNs~l~A  618 (761)
T PRK09103        543 TFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDL---DA-ICNEPLHYDWETLREEIKTHGLRNSTLSA  618 (761)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHCCCC---CC-CCCCCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf             999999999999999999739997878880113756354420341---11-35885546999999999984964313611


Q ss_pred             CCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHC
Q ss_conf             07743687783889884756012034532676136646589998998589868999999851996277644886788650
Q gi|254780502|r  766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH  845 (954)
Q Consensus       766 iAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f  845 (954)
T Consensus       619 iaPT~S~S~I~g~s~~ieP~~~~~~~k~~~~G~~~~~~p~~--------------------------------~~~k~~y  666 (761)
T PRK09103        619 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY--------------------------------ERLKDAY  666 (761)
T ss_pred             ECCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH--------------------------------HHHHHHH
T ss_conf             17706777751828670768342677751477340047757--------------------------------8888888


Q ss_pred             CCHHCC-CHHHHHHHHHHHCCHHCCCEEEEEEC-CC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCC
Q ss_conf             522206-88999999985206300523204754-89------99899999999999729867979658841111210124
Q gi|254780502|r  846 ATAFEI-DPMWLIESASRRQKWIDQAQSLNLYL-DE------PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK  917 (954)
Q Consensus       846 ~ta~ei-~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~------~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~~ek~t~~  917 (954)
T Consensus       667 ~~~w~i~~~~~~I~~~a~rqk~IDQsqS~Nl~~~p~~~~~~~~~~~~l~~~~~~AWk~GlKT~YYlRtr~~a~~~~~~~~  746 (761)
T PRK09103        667 ELLWEMPNNDGYLQLVGIMQKFVDQAISANTNYDPSRFPGGKVPMKQLLKDLLTAYKFGVKTLYYHNTRDGAEDAQDDLQ  746 (761)
T ss_pred             HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHCCCC
T ss_conf             98850567504799999982546523467554374213567767999999999999758685103546111340112567


Q ss_pred             C
Q ss_conf             4
Q gi|254780502|r  918 G  918 (954)
Q Consensus       918 ~  918 (954)
T Consensus       747 ~  747 (761)
T PRK09103        747 P  747 (761)
T ss_pred             C
T ss_conf             2