Query gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 954
No_of_seqs 315 out of 1862
Neff 6.2
Searched_HMMs 39220
Date Sun May 29 23:48:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780502.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07207 ribonucleotide-diphos 100.0 0 0 2456.2 85.2 930 16-954 23-964 (964)
2 PRK12365 ribonucleotide-diphos 100.0 0 0 2408.6 80.9 925 23-954 112-1046(1046)
3 PRK12364 ribonucleotide-diphos 100.0 0 0 2008.3 70.3 796 29-908 1-832 (842)
4 PRK06539 ribonucleotide-diphos 100.0 0 0 1891.1 69.4 803 144-954 2-822 (822)
5 PRK08447 ribonucleotide-diphos 100.0 0 0 1778.5 65.5 719 145-918 1-780 (788)
6 PRK09209 ribonucleotide-diphos 100.0 0 0 1739.1 62.4 712 141-908 27-775 (785)
7 PRK09103 ribonucleotide-diphos 100.0 0 0 1723.5 59.8 720 143-918 3-747 (761)
8 PRK07088 ribonucleotide-diphos 100.0 0 0 1720.1 59.5 694 159-908 1-733 (743)
9 KOG1112 consensus 100.0 0 0 1646.5 43.8 781 145-954 1-795 (796)
10 PRK06406 ribonucleotide-diphos 100.0 0 0 1614.7 64.7 749 28-951 4-764 (770)
11 PRK08188 ribonucleotide-diphos 100.0 0 0 1490.7 52.0 658 203-909 2-700 (714)
12 TIGR02506 NrdE_NrdA ribonucleo 100.0 0 0 1481.7 43.5 611 295-906 1-685 (685)
13 PRK09102 ribonucleotide-diphos 100.0 0 0 1436.0 48.0 582 277-954 5-600 (600)
14 PRK07187 ribonucleotide-diphos 100.0 0 0 1431.4 50.8 653 204-909 11-698 (722)
15 PRK07632 ribonucleotide-diphos 100.0 0 0 1419.1 50.1 609 254-907 50-685 (696)
16 PRK07306 ribonucleotide-diphos 100.0 0 0 1410.3 49.2 610 254-909 55-706 (720)
17 PRK08665 ribonucleotide-diphos 100.0 0 0 1353.9 49.0 552 292-913 2-563 (733)
18 TIGR02504 NrdJ_Z ribonucleosid 100.0 0 0 1326.2 40.1 608 298-910 2-789 (792)
19 PRK06948 hypothetical protein; 100.0 0 0 1306.2 44.5 565 292-919 12-596 (602)
20 pfam02867 Ribonuc_red_lgC Ribo 100.0 0 0 1290.6 44.3 515 368-904 1-516 (516)
21 PRK08332 ribonucleotide-diphos 100.0 0 0 1254.0 55.5 472 399-909 755-1613(1748)
22 cd01679 RNR_I Class I ribonucl 100.0 0 0 1198.2 40.3 454 317-905 1-460 (460)
23 PRK08115 ribonucleotide-diphos 100.0 0 0 1187.8 43.1 560 317-911 130-775 (857)
24 COG0209 NrdA Ribonucleotide re 100.0 0 0 1183.2 42.2 629 184-917 4-646 (651)
25 cd02888 RNR_II_dimer Class II 100.0 0 0 1172.4 38.8 457 339-906 1-464 (464)
26 PRK06556 vitamin B12-dependent 100.0 0 0 1158.1 46.2 542 333-914 121-709 (957)
27 PRK07562 ribonucleotide-diphos 100.0 0 0 1059.0 44.9 567 316-914 105-925 (1177)
28 TIGR02510 NrdE-prime ribonucle 100.0 0 0 873.6 21.0 509 297-910 22-546 (560)
29 cd00576 RNR_PFL Ribonucleotide 100.0 0 0 454.8 23.7 365 340-902 2-399 (401)
30 cd01676 RNR_II_monomer Class I 100.0 1.7E-43 0 341.6 25.0 403 373-903 165-601 (658)
31 PRK07111 anaerobic ribonucleos 100.0 2.7E-29 6.8E-34 236.2 38.0 96 29-133 3-98 (703)
32 TIGR02505 RTPR ribonucleoside- 100.0 1.8E-33 4.5E-38 267.2 15.5 435 375-895 209-750 (827)
33 PRK08270 anaerobic ribonucleos 100.0 2E-28 5.1E-33 229.7 29.1 94 29-133 2-95 (681)
34 PRK09263 anaerobic ribonucleos 100.0 8E-28 2E-32 225.3 25.1 94 29-133 3-96 (711)
35 PRK12365 ribonucleotide-diphos 99.8 4.1E-18 1E-22 153.2 14.2 192 25-230 5-214 (1046)
36 pfam03477 ATP-cone ATP cone do 99.8 2.8E-18 7.2E-23 154.4 9.8 88 29-126 1-88 (89)
37 LOAD_ATP_cone consensus 99.8 3.5E-18 9E-23 153.7 9.8 89 29-129 1-89 (89)
38 pfam00317 Ribonuc_red_lgN Ribo 99.7 1.1E-17 2.8E-22 150.0 7.2 76 291-366 1-79 (79)
39 PRK06406 ribonucleotide-diphos 99.6 1.8E-14 4.6E-19 126.2 15.3 146 143-333 3-154 (770)
40 COG1328 NrdD Oxygen-sensitive 99.4 6.2E-13 1.6E-17 114.8 9.4 93 29-131 3-95 (700)
41 PRK06539 ribonucleotide-diphos 98.8 2.9E-07 7.3E-12 72.8 13.1 84 28-125 2-90 (822)
42 cd01675 RNR_III Class III ribo 98.6 1.5E-05 3.9E-10 60.0 18.1 248 543-897 229-509 (555)
43 pfam03477 ATP-cone ATP cone do 98.5 7.8E-07 2E-11 69.5 7.7 82 145-230 1-88 (89)
44 LOAD_ATP_cone consensus 98.4 2.2E-06 5.5E-11 66.3 9.4 83 145-232 1-87 (89)
45 PRK08447 ribonucleotide-diphos 98.3 9E-06 2.3E-10 61.7 10.4 79 29-123 1-85 (788)
46 PRK08332 ribonucleotide-diphos 98.0 0.00029 7.4E-09 50.5 12.4 299 29-400 4-302 (1748)
47 PRK09103 ribonucleotide-diphos 97.5 0.00062 1.6E-08 48.0 8.1 81 27-123 3-89 (761)
48 PRK08271 anaerobic ribonucleos 97.4 0.015 3.8E-07 37.8 15.9 197 597-898 348-559 (625)
49 PRK00464 nrdR transcriptional 97.4 0.0011 2.7E-08 46.3 7.9 72 27-108 47-118 (149)
50 PRK08579 anaerobic ribonucleos 97.1 0.031 7.8E-07 35.5 18.7 198 600-897 332-557 (623)
51 TIGR02487 NrdD anaerobic ribon 97.0 0.014 3.7E-07 37.9 10.6 264 543-902 249-584 (655)
52 COG1328 NrdD Oxygen-sensitive 96.6 0.068 1.7E-06 32.9 27.0 243 556-895 357-630 (700)
53 COG1327 Predicted transcriptio 96.6 0.021 5.4E-07 36.7 8.6 73 29-111 49-121 (156)
54 PRK09263 anaerobic ribonucleos 96.6 0.034 8.6E-07 35.2 9.6 245 543-894 348-630 (711)
55 PRK07111 anaerobic ribonucleos 96.4 0.015 3.8E-07 37.8 6.8 317 438-897 278-638 (703)
56 PRK08270 anaerobic ribonucleos 96.2 0.051 1.3E-06 33.8 8.8 241 545-894 343-612 (681)
57 PRK00464 nrdR transcriptional 96.2 0.036 9.1E-07 35.0 8.0 76 143-221 47-129 (149)
58 PRK12364 ribonucleotide-diphos 95.7 0.19 4.7E-06 29.7 15.4 81 145-230 1-91 (842)
59 PRK10977 hypothetical protein; 95.4 0.25 6.3E-06 28.8 12.0 240 539-907 188-452 (510)
60 COG1327 Predicted transcriptio 94.8 0.24 6.1E-06 28.8 7.9 75 144-221 48-129 (156)
61 PRK09209 ribonucleotide-diphos 94.6 0.12 3.1E-06 31.1 6.0 87 22-122 24-117 (785)
62 COG2074 2-phosphoglycerate kin 94.2 0.25 6.4E-06 28.7 6.9 122 31-202 5-128 (299)
63 PRK12337 2-phosphoglycerate ki 93.2 0.42 1.1E-05 27.0 6.7 142 38-213 14-159 (492)
64 pfam11230 DUF3029 Protein of u 91.9 1 2.5E-05 24.3 13.3 242 539-907 174-440 (487)
65 PRK04220 2-phosphoglycerate ki 87.6 2.1 5.3E-05 21.9 7.4 82 30-125 5-87 (306)
66 TIGR00169 leuB 3-isopropylmala 77.3 2.6 6.6E-05 21.2 3.1 49 541-589 200-255 (370)
67 COG1794 RacX Aspartate racemas 76.7 0.92 2.3E-05 24.5 0.7 109 424-596 98-207 (230)
68 TIGR01578 MiaB-like-B MiaB-lik 63.9 8.7 0.00022 17.3 3.3 45 455-502 252-301 (487)
69 pfam03915 AIP3 Actin interacti 62.8 9.5 0.00024 17.0 3.4 20 614-633 343-362 (422)
70 TIGR02959 SigZ RNA polymerase 56.2 13 0.00032 16.1 7.1 117 51-202 8-126 (170)
71 COG1423 ATP-dependent DNA liga 55.6 13 0.00033 16.0 3.3 44 533-576 198-244 (382)
72 TIGR01532 E4PD_g-proteo D-eryt 55.1 11 0.00028 16.5 2.6 63 401-483 141-213 (334)
73 COG5146 PanK Pantothenate kina 52.5 7.3 0.00019 17.9 1.4 113 339-458 83-219 (342)
74 TIGR02360 pbenz_hydroxyl 4-hyd 52.3 5 0.00013 19.1 0.5 165 444-636 67-259 (393)
75 TIGR02365 dha_L_ycgS dihydroxy 50.2 15 0.00039 15.5 3.3 85 376-465 50-138 (200)
76 cd04335 PrdX_deacylase This CD 50.2 5.3 0.00014 18.9 0.4 104 663-793 4-107 (156)
77 TIGR00020 prfB peptide chain r 49.4 5.9 0.00015 18.5 0.5 40 343-383 195-239 (373)
78 pfam10407 Cytokin_check_N Cdc1 46.3 16 0.0004 15.4 2.3 32 70-101 14-45 (74)
79 cd06845 Bcl-2_like Apoptosis r 45.2 18 0.00046 14.9 5.2 92 112-226 5-97 (144)
80 COG2099 CobK Precorrin-6x redu 44.1 19 0.00048 14.8 2.7 178 658-905 53-231 (257)
81 TIGR02827 RNR_anaer_Bdell anae 43.6 19 0.00049 14.7 5.8 197 596-898 355-575 (638)
82 TIGR00444 mazG MazG family pro 43.1 11 0.00028 16.5 1.1 36 368-407 123-158 (253)
83 cd04336 YeaK YeaK is an unchar 42.0 7.6 0.00019 17.7 0.1 101 662-790 3-106 (153)
84 KOG3938 consensus 40.3 21 0.00054 14.4 2.7 16 622-637 254-269 (334)
85 TIGR02997 Sig70-cyanoRpoD RNA 38.5 23 0.00058 14.2 4.9 45 256-333 137-182 (336)
86 TIGR02999 Sig-70_X6 RNA polyme 36.8 24 0.00061 14.0 9.2 163 48-221 2-187 (194)
87 PRK13131 consensus 35.8 25 0.00063 13.9 2.2 20 653-672 85-104 (257)
88 PTZ00087 thrombosponding-relat 35.5 25 0.00064 13.9 2.3 121 453-592 157-285 (342)
89 TIGR01085 murE UDP-N-acetylmur 35.4 25 0.00064 13.9 2.7 16 509-524 231-246 (494)
90 KOG2468 consensus 35.2 25 0.00065 13.8 2.8 20 406-426 435-454 (510)
91 KOG1785 consensus 35.2 25 0.00065 13.8 3.7 29 534-565 303-332 (563)
92 KOG3951 consensus 34.6 23 0.00059 14.1 1.6 38 393-430 249-286 (321)
93 TIGR01160 SUI1_MOF2 translatio 34.6 26 0.00066 13.8 2.3 30 27-56 29-67 (111)
94 pfam08575 DUF1763 Domain of un 34.0 26 0.00067 13.7 4.0 22 149-170 37-58 (78)
95 pfam04859 DUF641 Plant protein 33.2 22 0.00056 14.3 1.3 11 39-49 39-49 (134)
96 TIGR02456 treS_nterm trehalose 32.7 26 0.00067 13.7 1.6 101 342-470 362-492 (560)
97 cd07670 BAR_SNX18 The Bin/Amph 32.4 28 0.00071 13.5 5.8 25 651-675 48-72 (207)
98 TIGR01082 murC UDP-N-acetylmur 32.2 24 0.00062 14.0 1.4 33 657-689 9-43 (491)
99 TIGR00381 cdhD CO dehydrogenas 32.1 17 0.00043 15.2 0.6 97 583-714 211-318 (401)
100 KOG0149 consensus 31.3 25 0.00065 13.8 1.4 37 556-605 54-90 (247)
101 COG4553 DepA Poly-beta-hydroxy 30.8 23 0.00059 14.1 1.1 68 659-760 344-411 (415)
102 PTZ00069 60S ribosomal protein 29.4 28 0.00072 13.5 1.4 43 568-610 42-86 (300)
103 KOG4375 consensus 29.3 31 0.00079 13.2 1.5 65 583-665 195-259 (272)
104 pfam02186 TFIIE_beta TFIIE bet 28.5 32 0.00082 13.1 2.4 25 80-110 11-35 (65)
105 KOG1464 consensus 28.5 26 0.00066 13.8 1.0 81 191-288 36-118 (440)
106 TIGR01852 lipid_A_lpxA acyl-[a 28.4 32 0.00082 13.1 4.4 72 358-430 90-180 (257)
107 COG0339 Dcp Zn-dependent oligo 28.3 4.9 0.00013 19.1 -2.7 61 429-499 365-426 (683)
108 PRK07228 N-ethylammeline chlor 27.7 33 0.00085 13.0 3.2 17 29-45 1-17 (445)
109 PRK13912 nuclease NucT; Provis 26.3 34 0.00087 12.9 1.3 39 860-899 38-78 (180)
110 pfam09019 EcoRII-C EcoRII C te 26.1 35 0.0009 12.8 3.7 97 649-777 31-131 (164)
111 pfam10456 BAR_3_WASP_bdg WASP- 26.1 35 0.0009 12.8 6.2 86 579-676 17-102 (237)
112 KOG4287 consensus 26.0 35 0.0009 12.7 2.8 33 756-793 318-352 (402)
113 pfam10660 MitoNEET_N Iron-cont 25.8 19 0.00048 14.8 -0.0 29 374-402 19-51 (64)
114 PRK01045 ispH 4-hydroxy-3-meth 25.7 36 0.00091 12.7 3.4 11 456-466 42-52 (304)
115 PRK07748 sporulation inhibitor 25.4 36 0.00093 12.7 2.2 27 660-686 141-167 (205)
116 pfam09630 DUF2024 Domain of un 25.4 36 0.00093 12.7 2.3 63 30-112 9-77 (81)
117 PTZ00315 2'-phosphotransferase 25.1 37 0.00094 12.6 6.7 79 610-691 157-252 (570)
118 COG5092 NMT1 N-myristoyl trans 24.7 25 0.00064 13.9 0.4 60 639-699 327-386 (451)
119 cd07626 BAR_SNX9_like The Bin/ 24.4 38 0.00096 12.5 5.4 23 651-673 40-62 (199)
120 COG3254 Uncharacterized conser 24.4 38 0.00097 12.5 1.3 17 745-761 25-41 (105)
121 KOG1885 consensus 24.3 35 0.00089 12.8 1.1 105 766-898 415-523 (560)
122 pfam03500 Cellsynth_D Cellulos 24.3 38 0.00097 12.5 2.2 121 746-907 18-144 (144)
123 TIGR01505 tartro_sem_red 2-hyd 23.6 23 0.0006 14.1 0.1 55 444-501 54-115 (291)
124 TIGR02530 flg_new flagellar op 23.3 33 0.00083 13.0 0.8 47 850-907 33-80 (113)
125 COG0593 DnaA ATPase involved i 23.2 25 0.00064 13.9 0.2 33 417-454 119-151 (408)
126 KOG1149 consensus 23.1 40 0.001 12.4 2.6 40 194-233 113-152 (524)
127 COG4604 CeuD ABC-type enteroch 23.0 40 0.001 12.4 1.3 47 272-331 107-153 (252)
128 pfam01231 IDO Indoleamine 2,3- 22.7 41 0.001 12.3 2.5 48 627-688 264-311 (407)
129 TIGR01931 cysJ sulfite reducta 22.6 41 0.001 12.3 1.3 37 774-810 485-525 (628)
130 TIGR02950 SigM_subfam RNA poly 22.6 35 0.00089 12.8 0.8 41 70-121 25-66 (162)
131 pfam01894 UPF0047 Uncharacteri 21.6 24 0.00061 14.0 -0.2 31 747-777 5-35 (118)
132 TIGR01849 PHB_depoly_PhaZ poly 21.2 19 0.00048 14.8 -0.8 64 651-723 342-406 (414)
133 pfam01663 Phosphodiest Type I 21.2 43 0.0011 12.1 2.4 25 359-383 28-52 (340)
134 TIGR00244 TIGR00244 transcript 21.0 44 0.0011 12.1 6.9 30 144-173 48-77 (147)
135 KOG2703 consensus 20.8 44 0.0011 12.1 2.5 39 745-784 385-426 (460)
136 pfam04271 consensus 20.8 44 0.0011 12.0 1.8 12 212-223 46-57 (73)
137 cd07669 BAR_SNX33 The Bin/Amph 20.7 44 0.0011 12.0 5.3 19 652-670 49-67 (207)
138 COG2926 Uncharacterized protei 20.7 44 0.0011 12.0 4.1 37 93-131 56-92 (109)
No 1
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=2456.22 Aligned_cols=930 Identities=63% Similarity=1.039 Sum_probs=894.7
Q ss_pred CCCCCCCCHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 11234451021164698028973224867999999999987048776432107999999999999999850667898521
Q gi|254780502|r 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHI 95 (954)
Q Consensus 16 ~~~~~~~~~~~~~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~V 95 (954)
+...+++|++ ||||||||+|||||++||++||+|||+||+|+++++|+|+|+.|++||++|++++.+++|+|+++||
T Consensus 23 ~~~~~~~~~~---~~VIkRnG~vv~Fd~~KI~vAi~KAFlAv~g~~aa~s~ri~e~V~~lt~~vv~~l~rr~p~gg~~hI 99 (964)
T PRK07207 23 ALAPATAPGQ---YKVIRRNGSVVPFEPSKIAVAMTKAFLAVEGGQAAASARVRETVEQLTEQVVRALVRRRPSGGTFHI 99 (964)
T ss_pred CCCCCCCCCC---EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 6687778865---3899518933276889999999999996449734341789999999999999999862889995111
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 14548999999861208999998890999999998764210000234422898059976025989999999998516666
Q gi|254780502|r 96 EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD 175 (954)
Q Consensus 96 E~IQD~VE~~LM~~g~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~ 175 (954)
|+||||||++|||+|||+|||+||||||+|+++|++++... .....+.++|++.||+++|||..+|+.++.+||.||++
T Consensus 100 EdIQDqVElaLMr~G~~kVARaYILYReeRa~~R~~~~~~~-~~~~~~~L~v~~~DG~~~~lD~~rL~~~i~~Ac~gL~~ 178 (964)
T PRK07207 100 EDIQDQVELALMRSGEHKVARAYVLYREKRAQERAHEAAAA-AAEAHPGLNVTLDNGVRRPLDMARLRALIESACEGLAG 178 (964)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 33589999999977769999999888999999987640112-33456642487367850468899999999999834244
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999999897303789888999999999999874418771467799999999998621003331011044677754788
Q gi|254780502|r 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 (954)
Q Consensus 176 v~~~~i~~~~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~ 255 (954)
|++..|+.++.++|||||+.+|+..++|++||+||++||+|+++|||||++++++|++++.. ......++...|+++
T Consensus 179 v~~~~Il~E~~rnLydGvs~~ev~~alIlaARtLIEkEP~Ys~VaARLLl~~i~~E~lg~~~---~~~~~~e~~~~Y~~~ 255 (964)
T PRK07207 179 VDAEPILAETLKNLYDGVPMKDVYKALILAARTLIEKEPNYSYVTARLLLHTLRREVLGFLA---EEVTQAEMATRYAEY 255 (964)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHH
T ss_conf 88899999988633158888899999999889875418628999999999999998741332---234467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCC
Q ss_conf 89986655767787777517739999976412101128989999999976211489275388999999996541645453
Q gi|254780502|r 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 (954)
Q Consensus 256 f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~~~ 335 (954)
|+.|+++|++.++++++|.+||+++|+++|||+||++|+|+||+||+||||+|++++++|+||+|||||||+||++|.++
T Consensus 256 f~~~i~~gi~~~~l~~~l~~~dl~~l~~~i~~~rd~~f~Y~gl~tl~~rYl~~~~~~~~E~PQ~~~mrvam~l~~~e~~~ 335 (964)
T PRK07207 256 FPAFIKKGIEAELLDPKLAQFDLERLGAALDAERDLQFGYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDR 335 (964)
T ss_pred HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 99999987750323554424149999976573443212255799999987431488142251999999998876224575
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999999999743303586112221002222321102547664135899998999998510544410124431112000
Q gi|254780502|r 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 (954)
Q Consensus 336 ~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~ 415 (954)
+.|++|||++||+++|+|||||||||||+++|||||||++|+|||+|||++++++|+|||+|||||++||+|||+||+|+
T Consensus 336 ~~~~~e~Y~~ms~~~f~~aTPTL~NaGt~~~QLSSCfl~~v~Dsl~gI~~~~~~~A~isK~gGGiG~~~s~iR~~Gs~I~ 415 (964)
T PRK07207 336 EARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIK 415 (964)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
T ss_conf 89999999998678705899922028999877775372687776999999999999986316722101356487988017
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHC
Q ss_conf 12787642889999998999997404666772478983567889999730257873023320232020348799998521
Q gi|254780502|r 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 (954)
Q Consensus 416 g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~ 495 (954)
||+|+|+|||||||+||+++++|+|||+||||+|+||++|||||++||++|+|+|||++|+||+|+||||||+||+||++
T Consensus 416 gt~G~SsGvVpfmkv~n~t~~~V~QgG~RrGA~~~yL~~wH~DI~eFL~lkkn~Gde~~r~~dl~~av~ipDlFM~rv~~ 495 (964)
T PRK07207 416 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVME 495 (964)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCHHHHHHHHC
T ss_conf 88981687002999999999999826977775158867853309999986115784465531166212469899999974
Q ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCC
Q ss_conf 28747871011444100134437899877875210488605778668899999999998828812783311202221246
Q gi|254780502|r 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 (954)
Q Consensus 496 ~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~ 575 (954)
|++|+||||+++|+|+|.||++|+++|.+||+.+..++++.+|+|+|++||++|++++||||+||++|+|+||++||++|
T Consensus 496 d~~w~Lf~P~~~~~L~d~~G~~f~~~Y~~yE~~~~~ge~~~~k~i~Ar~Lw~~Il~~~~ETG~P~i~fkD~~N~~np~~~ 575 (964)
T PRK07207 496 DGEWTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFKKIPAKDLWRKMLSMLFETGHPWITFKDPCNLRSPQQH 575 (964)
T ss_pred CCCEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCC
T ss_conf 99779757644661554034668999999998500567630037639999999999999858971797034230575345
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67034046752001366544332111255406862543447988855899999999765311210001888886443310
Q gi|254780502|r 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 (954)
Q Consensus 576 ~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~ 655 (954)
+|+|+|||||+||+||++++|++|||||||||++|+.++.|||++|+++|+++|||||||||+|+||+|+++.+|+++||
T Consensus 576 ~G~I~sSNLCtEI~l~t~~~e~aVCNLgSINL~~~v~~g~~D~~~L~~~v~~avR~LDnVID~N~ypv~~a~~sn~r~R~ 655 (964)
T PRK07207 576 VGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHLKDGKLDHDKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLKHRP 655 (964)
T ss_pred CCCCCCCCCCCCEEECCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
T ss_conf 68310488775421058887433653143028876151216689999999999999999873888774799999872487
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCC-
Q ss_conf 0021111889999729632337889999999999857799978987531177887667812138762446630055225-
Q gi|254780502|r 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734 (954)
Q Consensus 656 iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~- 734 (954)
||||||||||+|+++||||+|+||++|++++||+|+|+|++||++||+|||+||.|+||+|++|+||+|+|+.+.++|+
T Consensus 656 IGLGvmGlad~L~~~~ipy~S~eA~~~~~~i~e~I~y~A~~aS~eLAkErG~y~~f~gS~ws~G~lp~D~~~~~~~~rg~ 735 (964)
T PRK07207 656 VGLGIMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAYWASTELAEERGRYSTYEGSLWDRGILPIDSLKLLAEERGG 735 (964)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHCCC
T ss_conf 03130379999998498848999999999999999999999999999975999888988202177751255555664034
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCC
Q ss_conf 33454021027289999999841204430110774368778388988475601203453267613664658999899858
Q gi|254780502|r 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 (954)
Q Consensus 735 ~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g 814 (954)
.+.++.+.++||+.||++|++||||||++||||||||||+|+|||+||||+|+|+|+|++++|+|++|||||+++|+++|
T Consensus 736 ~~~~~~~~~~dW~~Lr~~I~~~G~RNs~l~AiAPTaSiS~I~G~s~sIEP~~sn~y~r~~lsGef~vvN~~lv~dLk~~g 815 (964)
T PRK07207 736 YVEVDRSSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARG 815 (964)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHEEEECCCCEEEEECHHHHHHHHHCC
T ss_conf 33568656679999999999838402203101782066886287865261421003663156447998789999999838
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 98689999998519962776448867886505222068899999998520630052320475489998999999999997
Q gi|254780502|r 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 (954)
Q Consensus 815 ~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~ 894 (954)
+|+++|.+++++++||||+|++||+++|.+|+|||||+|+|+|+|||+||||||||||+|||++++|.++|.++|++||+
T Consensus 816 lW~~~m~~~l~~~~GSvq~i~~iP~~lk~~ykTA~EI~~~~~I~~aA~RQk~IDQsqSlNL~~~~~t~~~l~~~y~~AWk 895 (964)
T PRK07207 816 LWDEVMVADLKYFDGSLQRIDRIPADLKALYATAFEVEPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWL 895 (964)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCCCCHHCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 97299999998628984563448988997615073189999999999866744110055111699999999999999998
Q ss_pred CCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 298679796588411112101244443211123455----------555543234542236-888500069
Q gi|254780502|r 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD----------PNSSTHSLGIPSSCT-SDTECEVCQ 954 (954)
Q Consensus 895 ~GlKt~yy~R~~s~~~~ek~t~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~p~CeaCq 954 (954)
+||||+||+||++||++||+|++. +++|+++... ......+.+.|.+|+ +||+|||||
T Consensus 896 ~GLKT~YYlRs~~a~~~~k~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~p~ceacq 964 (964)
T PRK07207 896 RGLKTTYYLRTLGATHVEKSTVNT--GALNAVSSGGAVDAAAALAPAEEAAGPACVPKACDIDDPDCEACQ 964 (964)
T ss_pred CCCCCEEECCCCHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 387511001662566778875023--323556655544433333334445555566665789999863357
No 2
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=0 Score=2408.63 Aligned_cols=925 Identities=52% Similarity=0.856 Sum_probs=885.3
Q ss_pred CHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 10211646980289732248679999999999870487764321079999999999999998506678985211454899
Q gi|254780502|r 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQV 102 (954)
Q Consensus 23 ~~~~~~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~V 102 (954)
-++-+++|||||||+||+||++||++||+||||||+|+++++|+|+|+.|++||++|++.+.|++|+|+++|||+|||||
T Consensus 112 ~~~~~s~~virRng~vv~f~~~kI~vA~tKAFlav~g~~~a~s~ri~~~v~~lt~~v~~~~~rr~~~gg~~HIEdIQD~V 191 (1046)
T PRK12365 112 KKSWQSLSVIRRDGTSVKFNPMKISAALEKAFRATLKIEGMTPPATLSEINDLTQKIVEEILELCSQEERIDIEEIQDIV 191 (1046)
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
T ss_conf 58863147994489332668999999999999984598644428899999999999999997528999806300447999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCC-CCCHH
Q ss_conf 99998612089999988909999999987642100002--3442289805997602598999999999851666-68999
Q gi|254780502|r 103 ECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSK 179 (954)
Q Consensus 103 E~~LM~~g~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~--~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~-~v~~~ 179 (954)
|++|||+|||+|||+||||||+|+++|+++++...... ..+.+.|++.||+..|+|..+|..++..+|.||. .+++.
T Consensus 192 El~LMr~G~~~VAraYILYReeRa~~R~~k~~~~~~~~~~~~~~~~v~~~dg~~~~ld~~~l~~~~~~ac~~l~~~~~~~ 271 (1046)
T PRK12365 192 EKQLMVVGHYDVAKNYILYREARARVRDNKEEDGQEEFVPQEETYEVLKEDGTTYLITKSQLLARFAWACSRFPETTDAQ 271 (1046)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99998677099999999989999998987654212112452002110014675255859999999999970244346789
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998973037898889999999999998744187714677999999999986210033310110446777547888998
Q gi|254780502|r 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 (954)
Q Consensus 180 ~i~~~~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~ 259 (954)
.+..++.++|||||++.|+..++|++|+.+|++||+|+++|||||+..+++++++.. ....++...|+++|+.|
T Consensus 272 ~l~~~~~~nlydgi~~~e~~~~~I~aar~lie~eP~y~~vaaRLl~~~~~~e~lg~~------~~~~~~~~~y~~~f~~~ 345 (1046)
T PRK12365 272 LLADMAFANFYSGIKESEVVLACIMAARANIEKEPDYAFVAAELLLDVVYKEALGKS------SQDEDLEEAHKDHFKRY 345 (1046)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHH
T ss_conf 999999862126898899999999989986473771699999999988999873652------33689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCC-CCHHH
Q ss_conf 66557677877775177399999764121011289899999999762114892753889999999965416454-53689
Q gi|254780502|r 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET-EKEKR 338 (954)
Q Consensus 260 i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~-~~~~~ 338 (954)
+.+|... .+++.|.+||+++|+++|||+||++|+|+|++|||||||++.+|+++|+||+||||||||||++|. ++..|
T Consensus 346 i~~g~~~-~l~~~l~~~dl~~l~~ai~~~RD~~f~Y~Gl~tL~dRYl~~~~~~~~E~PQ~~~MrVAmgLa~~e~e~~~~~ 424 (1046)
T PRK12365 346 ILNGEEY-RLNPELKDYDLDALAEALDLSRDQQFSYMGVQNLYDRYFNHHEGRRLETAQIFWMRVSMGLALNEGEKKNFW 424 (1046)
T ss_pred HHHHHHH-CCCHHHHHCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9855653-033656540599998453824022020689999999986314883643508899999988763055216789
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999743303586112221002222321102547664135899998999998510544410124431112000127
Q gi|254780502|r 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 (954)
Q Consensus 339 ~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~ 418 (954)
+++||++||+++|+|||||||||||+++|||||||++|+|||+|||++++++|+|||+|||||++||+|||.||.|+||+
T Consensus 425 aiefY~lmS~~~f~~aTPTLfNAGt~~~QLSSCFl~~v~DslegI~~tik~~A~iSK~gGGiG~~~s~vRa~Gs~Ikgt~ 504 (1046)
T PRK12365 425 AITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVHIYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGTN 504 (1046)
T ss_pred HHHHHHHHHCCEECCCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 99999986437111589700038998877650673378888899999999999987417720221356366898025779
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCC
Q ss_conf 87642889999998999997404666772478983567889999730257873023320232020348799998521287
Q gi|254780502|r 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 (954)
Q Consensus 419 G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~ 498 (954)
|+|+|||||||++|+++++|+|||+||||+|+||++|||||++||++|+|+|||++|+||+|+||||||+||+||++|++
T Consensus 505 G~SsGvVpflkv~N~ta~aV~QGGkRrGA~a~YLe~WH~DIeeFLdlRkn~Gde~~Ra~dln~avwIpDlFMkrVe~d~~ 584 (1046)
T PRK12365 505 GKSQGVIPFIKVANDTAIAVNQGGKRKGAMCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKGT 584 (1046)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHCCCCCHHCCCHHHHHHHHCCCC
T ss_conf 84788000899999999999728976660378856761259999972356881766431481022479999999975996
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCE
Q ss_conf 47871011444100134437899877875210488605778668899999999998828812783311202221246670
Q gi|254780502|r 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 (954)
Q Consensus 499 w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~ 578 (954)
|+||||++||+|+|+||++|+++|.+||+.++.++++.+|+|+|++||++|++++||||+||++|+|+||++||++|.|+
T Consensus 585 W~Lf~P~e~p~L~d~yG~eFek~Y~~yE~~~~~geik~~k~V~Ar~Lw~kIl~s~~ETG~Pyi~FkD~~N~~spq~h~G~ 664 (1046)
T PRK12365 585 WTLFSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVEAEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHVGV 664 (1046)
T ss_pred EEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCE
T ss_conf 47658222565878887899999999986312565422506519999999999999738884685252346676667671
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 34046752001366544332111255406862543447988855899999999765311210001888886443310002
Q gi|254780502|r 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 (954)
Q Consensus 579 I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGl 658 (954)
|+||||||||+|||+++|++|||||||||++|++++.|||++|+++|+++|||||||||+|+||+|+++.+|+++|||||
T Consensus 665 I~sSNLCtEI~l~tse~EtAVCNLgSINL~~~v~~~~~D~ekL~~tv~~avR~LDNVIDiN~YPv~eA~~sN~r~RpIGL 744 (1046)
T PRK12365 665 VRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDGLDEEKLSETISIAIRILDNVIDLNFYPTPEAKEANLTHRAVGL 744 (1046)
T ss_pred EEECCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 54046566612258997623643563125551566777899999999999998888777336875689999874213021
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCC--C
Q ss_conf 11118899997296323378899999999998577999789875311778876678121387624466300552253--3
Q gi|254780502|r 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 (954)
Q Consensus 659 Gv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~--~ 736 (954)
|||||||+|+++||||+|+||++|++++||+|+|+|++||++||+|||+||.|+||+|++|+||+|+|+++.+.|+. +
T Consensus 745 GVMGlaD~L~~lgIpy~SeEA~~f~dkifE~I~y~Ai~AS~eLAkERG~Y~sf~GS~ws~G~lp~D~~~ll~~~rg~~~~ 824 (1046)
T PRK12365 745 GVMGFQDALYKLNISYASQEAVEFADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEHNV 824 (1046)
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 25589999998699968999999999999999999999999999985888667898442785671157778874276554
Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCC
Q ss_conf 45402102728999999984120443011077436877838898847560120345326761366465899989985898
Q gi|254780502|r 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 (954)
Q Consensus 737 ~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~ 816 (954)
.++.+.++||+.||++|++||||||++||||||+|||+|+|+|+||||+|+|+|+|++++|+|+++|+||+++|+++|+|
T Consensus 825 ~~d~s~~~DW~~Lr~~Ik~~GmRNS~l~AIAPTASiS~I~G~s~sIEP~~sNiy~r~~lsGeF~vvN~~Lv~dLk~~glW 904 (1046)
T PRK12365 825 LMDTSSRKDWTPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGLW 904 (1046)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCCCCCCCCHHHHHEEEECCCCEEEEECHHHHHHHHHCCCC
T ss_conf 55876654709999999981964123244576388899738872326104433143025641698778999999974899
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 68999999851996277644886788650522206889999999852063005232047548999899999999999729
Q gi|254780502|r 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 (954)
Q Consensus 817 ~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~G 896 (954)
+++|+++|++++||||+|++||+++|++|+|||||+|+|+|+|||+||||||||||+|||+.+++.+++.++|++||++|
T Consensus 905 ~~~m~~~i~~~~GSvq~I~~IP~~lK~lYkTA~EIdq~wlI~~AA~Rqk~IDQsQSlNLy~~~p~~~kL~~~y~~AWk~G 984 (1046)
T PRK12365 905 DADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKG 984 (1046)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEECCHHHHHHHHHHHCCCCCHHHCCEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 79999999863998457666898999752200225899999998862575330110000017998779999999999738
Q ss_pred CCEEEEECCCCCHHHHHHCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86797965884111121012444432----11123455555543234542236888500069
Q gi|254780502|r 897 LKTTYYLRSRSATSVEKSTLKGVDGK----LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 (954)
Q Consensus 897 lKt~yy~R~~s~~~~ek~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~CeaCq 954 (954)
|||+||+||++||++||+|++..... ..................+.+|+.||+|||||
T Consensus 985 LKTtYYLRs~~at~~ekst~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ceacq 1046 (1046)
T PRK12365 985 LKTTYYLRSSAATSVEKSFIDINKRGIQPRWMKNKSASTSIVVERAKKTPVCSLEEGCESCQ 1046 (1046)
T ss_pred CCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76022205663220566433045556574223454445444456677898576898751146
No 3
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=0 Score=2008.30 Aligned_cols=796 Identities=35% Similarity=0.550 Sum_probs=732.5
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
||||||||+|||||++||++||+|||+||++..+ ++.+++|+++|++.+.++.|+|+++|||+||||||++|||
T Consensus 1 l~ViKRnG~vv~Fd~~KI~~AI~KAFlAv~~~~~------~e~v~~l~~~V~~~~~~~~~~g~~~hIE~IQD~VEl~LMr 74 (842)
T PRK12364 1 MEIIKRNGETEPYDREKIAVAIRKAFASVGNELA------PEIIYSLVAEVENFLFEMNKNGANVSVEKIQDLVEKTLME 74 (842)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9178359960587879999999999997589731------7899999999999999747899996840058999999986
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHH
Q ss_conf 120899999889099999999876421000023442289805997602598999999999851666--689999999897
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETY 186 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~--~v~~~~i~~~~~ 186 (954)
+|||+|||+||||||+|+++|+++++..... +.+.+...+...+.+++ .++...++.+..
T Consensus 75 ~G~~~VAraYILYReeRa~~R~~~~~~~~~~------------------~~~~~~~~l~~i~~~~~~~~~~l~~l~~~~~ 136 (842)
T PRK12364 75 HGFYAEVKNFILYRWQRTKRRKAREQIICFF------------------TDDTVLGVLKEIQKDFTSPEYSLDALAEKFL 136 (842)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 7769999999998999999998654222245------------------6167888999887403621314999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 303789888999999999999874418-7714677999999999986210033310110446777547888998665576
Q gi|254780502|r 187 KNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 (954)
Q Consensus 187 ~~lydgitt~el~~~li~aA~~Li~~e-Pdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~ 265 (954)
..+++||+..|+..+|+++|++|+++| |+|++||||||+.++++++.... ....+..+| +.++.++++|++
T Consensus 137 ~~~~~~~~~~e~~~~li~aa~~lie~e~P~y~~VaARlL~~~l~~~i~~~~-------~~~~i~~~~-~~~~~~~~~G~~ 208 (842)
T PRK12364 137 SFCKENMSERESLALLIKAAVELTAQEAPDWEFIAARLLNLQLSLKLKKQL-------EKAGIHSFY-EKIRYLEEEGLY 208 (842)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHH-HHHHHHHHCCHH
T ss_conf 740357735678999999789870324862899999998889999998775-------430188889-999888860304
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q ss_conf 77877775177399999764121011289899999999762114-89275388999999996541645-45368999999
Q gi|254780502|r 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFY 343 (954)
Q Consensus 266 ~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~-~~~~~E~pQ~~~mrVA~~la~~e-~~~~~~~~~~Y 343 (954)
.+++++.|+++|+++|+++|||+||++|+|+|++||+||||+|. .++++|+||+|||||||+|+++| .++.+|+++||
T Consensus 209 ~~~l~~~~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~ryl~~~~~~~~~e~pq~~~m~vam~l~~~e~~~~~~~~~~fY 288 (842)
T PRK12364 209 GSYIRAAYSRQEIEEAAGFICPERDKLFTYSGLDLLLKRYLIRTRSHEPLESPQEMFLGIALHLAMPEKQDRMQWVKKFY 288 (842)
T ss_pred HHHHHHHCCHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 65552322899999999754832222566278999999998741578578632789999999875256410799999999
Q ss_pred HHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99974330358611222100222232110254766413589999899999851054441012443111200012787642
Q gi|254780502|r 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 (954)
Q Consensus 344 ~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG 423 (954)
++||+++|+|||||||||||+++|||||||++|+|||+|||++++++|++||+|||||++||+|||+||+|+||+|+|||
T Consensus 289 ~~ms~~~f~~~TPtl~Nagt~~~QlSSCFl~~v~Dsl~~I~~~~~~~A~isK~gGGiG~~~s~lR~~Gs~I~gt~G~ssG 368 (842)
T PRK12364 289 DVLSKLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGGPIRGFQGVAGG 368 (842)
T ss_pred HHHHHCCCCCCCCEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99871662679885226898677765158278777689999999999999732674675135568899803788983687
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHC--CCCEEE
Q ss_conf 889999998999997404666772478983567889999730257873023320232020348799998521--287478
Q gi|254780502|r 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501 (954)
Q Consensus 424 ~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~--~~~w~L 501 (954)
||||||+||+++.+|+|||+||||+|+||++|||||++||++|+|+|||++|+||+|+||||||+||++|++ |++|+|
T Consensus 369 ~vpfmkv~n~~~~~v~QgG~RrGA~~~yL~~wHpDI~eFl~lK~n~Gd~~~r~~~l~~~v~i~D~Fm~~v~~d~~~~w~L 448 (842)
T PRK12364 369 VIRWIKLANDTAVAVDQLGVRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDLNQSWYL 448 (842)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHCCCCEEECHHHHHHHHHCCCCCEEE
T ss_conf 10299999999999970897745527887788858999996433066077776522320000289999997415783697
Q ss_pred EECCCCC-----CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCC
Q ss_conf 7101144-----41001344378998778752104886057786688999999999988288127833112022212466
Q gi|254780502|r 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 (954)
Q Consensus 502 f~P~~~~-----~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~ 576 (954)
|||++++ .|+|+||++|+++|.+|+...... .|+|+|++||++|++++||||+||++|+|+||++||++|.
T Consensus 449 f~P~ev~~~~g~~l~d~~g~ef~~~y~~~~~~~~~~----kr~i~A~~L~~~i~~~~~etG~P~i~f~D~~N~~np~~~~ 524 (842)
T PRK12364 449 FCPHEILTVKGYALEDYYGEEWEKRYWDCVNDSRIS----KRSIPIKDLVRLVLKSAVETGTPFTFNRDTVNRANPNAHR 524 (842)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCC
T ss_conf 278644323465367654179999999988546543----4055299999999999998689259961043205887777
Q ss_pred CEEEECCCCCCCCCCCCC-----------------------CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 703404675200136654-----------------------433211125540686254344798885589999999976
Q gi|254780502|r 577 GVVHSSNLCTEITLNSSS-----------------------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 (954)
Q Consensus 577 g~I~~sNlC~Ei~l~~~~-----------------------~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LD 633 (954)
|+|++||||+||+||+++ ++++|||||||||++++.+ |+++|+++|+++|||||
T Consensus 525 G~I~~SNlC~EI~~~~~~~~~~~~~~~~~~g~~~v~~~~~pge~~vCNL~SinL~~~~~~---d~~~l~~~v~~avR~LD 601 (842)
T PRK12364 525 GIIYCSNLCTEIAQNMSAIETVSTEITTEDGDTVVVKTTRPGDFVVCNLASLVLGNIDLE---DEEELKEVVSTAVRALD 601 (842)
T ss_pred CEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEECHHHHHCCCCCC---CHHHHHHHHHHHHHHHH
T ss_conf 837843685121257875344443234455642000146889768987156331136656---68999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 53112100018888864433100021111889999729632337889999999999857799978987531177887667
Q gi|254780502|r 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 (954)
Q Consensus 634 nVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~g 713 (954)
||||+|+||+|+++++|+++||||||+|||||+|+++||||+|+||++|+++|||+|+|+|++||++||+|||+||.|+|
T Consensus 602 nVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~I~~~A~~aS~eLAkErG~fp~f~g 681 (842)
T PRK12364 602 NVIDLNFYPLPYAQITNARYRSIGLGVSGYHHALAKRGIRWESEEHLAFADRVFERINYAAIEASSTIAKEKGAYEYFEG 681 (842)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98873137579999999973321743007999999849972888999999999999999999999999998499867687
Q ss_pred CHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEE
Q ss_conf 81213876244663005522533454021027289999999841204430110774368778388988475601203453
Q gi|254780502|r 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 (954)
Q Consensus 714 S~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~ 793 (954)
|+|++|.++. .+.+...||+.|+++|++||||||++||||||||||+|+|||+||||+|++.|++.
T Consensus 682 S~~~~G~~~~--------------~~~~~~~dW~~L~~~i~~~G~RNs~l~AIAPTgSiS~I~g~s~gIEPi~~~~~~~~ 747 (842)
T PRK12364 682 SDWQTGAYFK--------------KRGYVSEEWNRLAREVATNGMRNAYLLAVAPTSSTSIIAGTTAGVDPVMKRYFLEE 747 (842)
T ss_pred CHHHCCCHHH--------------CCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 8454175021--------------16876232999999997508511035211781899998295877283737999998
Q ss_pred CCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEE
Q ss_conf 26761366465899989985898689999998519962776448867886505222068899999998520630052320
Q gi|254780502|r 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 (954)
Q Consensus 794 ~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~ 873 (954)
+.++.+..++ |.++++.+++|+|||||+|+|||+|||+||||||||||+
T Consensus 748 ~~~~~~~~v~-------------------------------p~l~~~~~~~y~tA~eI~~~~~I~~aA~rQk~IDqs~S~ 796 (842)
T PRK12364 748 KKGALMPRVA-------------------------------PSLSDKTFWLYKSAHALDQRWSIRAAGLRQRHIDQAQSV 796 (842)
T ss_pred HHCCCCCCCC-------------------------------CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCC
T ss_conf 7067401037-------------------------------767865654641471399599999999875635187508
Q ss_pred EEECC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 47548-999899999999999729867979658841
Q gi|254780502|r 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 (954)
Q Consensus 874 tl~~~-~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~ 908 (954)
|||++ ++|.++|.++|++||++||||+|||||+|.
T Consensus 797 nl~~~~~~t~~dv~~~y~~Awk~GlKt~yy~Rs~S~ 832 (842)
T PRK12364 797 NLYITNEFTMRQVLDLYVLAWECGVKSVYYVRSKSL 832 (842)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 401699989999999999999839988999708987
No 4
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1891.14 Aligned_cols=803 Identities=40% Similarity=0.685 Sum_probs=759.8
Q ss_pred CEEEEECCCCEECCCHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 22898059976025989999999998516666--8999999989730378988899999999999987441877146779
Q gi|254780502|r 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 (954)
Q Consensus 144 ~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~--v~~~~i~~~~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAa 221 (954)
.|+|+||||++||||++||+.+|.+||.||++ +++.+|..++..+|||||||.||+++++++|++|+++||||+++||
T Consensus 2 ~m~ViKRDG~~E~~d~~KI~~~I~~a~~gl~~~~~~~~~i~~~v~~~lyDgItT~eIde~li~~aa~li~~~PdY~~lAa 81 (822)
T PRK06539 2 SITVVKRDGSKEPYDANKVNAAIEDAASGLDDAITWVTQLASELEITLFDGITTQQLDEAVIQVALQNVKDDPAFDTVAA 81 (822)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 65999589987010789999999999715874578899999999973579985999999999999984735825999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99999999986210033310110446777547888998665576778777751-77399999764121011289899999
Q gi|254780502|r 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQI 300 (954)
Q Consensus 222 Rlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~-~~dl~~L~~~Id~~RD~~F~Y~Gl~t 300 (954)
||+++++||++++.+... ..+..+|.++|+.++++|++.+++++.+. .||+++|+++|||+||++|+|||++|
T Consensus 82 Rill~~l~K~t~g~~~~~------~~l~~l~~~~f~~~i~~~v~~~l~d~~l~~~~dle~L~~~Id~~RD~~f~YfGlkt 155 (822)
T PRK06539 82 RLLLKSIYKRVLGDYKSP------EELRDLHAKHFRRFIEKGVEEGLLDSRLDGLFDLERLARALDPQRDELLKYIGVVT 155 (822)
T ss_pred HHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHCCHHHHHHHHCHHHHCCCCCHHHHH
T ss_conf 999999998620556762------88999989999999983010021148877241599998454843431675059999
Q ss_pred HHHHHHHCC-CCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 999762114-8927538899999999654164545368999999999743303586112221002222321102547664
Q gi|254780502|r 301 LYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 (954)
Q Consensus 301 L~~rYllk~-~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Ds 379 (954)
|++|||+|. +++++|+||+|||||||+|+.+|+++.+++++||++||+++|+||||||+||||+++|||||||++|+||
T Consensus 156 L~~~Yllk~~~~~~~E~PQ~m~mrvAm~l~~~e~~~~~~~~~~Y~~~S~~~~~~~tPtl~nagt~~~qlsSCfl~~v~Ds 235 (822)
T PRK06539 156 LNNRYGIRARNGDALEVPQYFWMRIAMGLSLNEKDPTSSALAFYEKMSKLEYLAAGSTLVNAGTCYPQLSNCFVMEMQDD 235 (822)
T ss_pred HHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEEECCCC
T ss_conf 99763502789986347089999999998752247389999999999707734699534238887888752698314887
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCH
Q ss_conf 13589999899999851054441012443111200012787642889999998999997404666772478983567889
Q gi|254780502|r 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 (954)
Q Consensus 380 l~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di 459 (954)
|+|||++++++|+|||+|||||++||+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+||++|||||
T Consensus 236 l~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~~~~g~ssG~vpfmk~~d~~~~~v~QGG~RrGA~a~yL~~wH~DI 315 (822)
T PRK06539 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYMENWHMDF 315 (822)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCH
T ss_conf 89999999999997415775110112216679630688860688435999999999998708976533578417887479
Q ss_pred HHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99973025787302332023202034879999852128747871011444100134437899877875210488605778
Q gi|254780502|r 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 (954)
Q Consensus 460 ~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~ 539 (954)
++||++|+|+||+++|++|+|+||||||+||+||++|++|+||||+++|+|+++||++|+++|.+|+..++.++++.+|+
T Consensus 316 ~eFl~~K~~~Gd~~~r~~~l~~~v~i~D~FM~rv~~~~~w~Lf~P~~~~~l~~~~g~~f~~~y~~~~~~~~~~~~~~~k~ 395 (822)
T PRK06539 316 PEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPLETPDLNELYGKAFSKRYAYYVNQAEAGRIRMFKR 395 (822)
T ss_pred HHHHHHCCCCCCHHHHHHCCCEEECCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99986222468687775407600021799999997299789868865761877651589999999997522365302148
Q ss_pred EEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHH
Q ss_conf 66889999999999882881278331120222124667034046752001366544332111255406862543447988
Q gi|254780502|r 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 (954)
Q Consensus 540 i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~ 619 (954)
|+||+||++|++++||||+||++|+|+||+++|++|.|+|++||||+||+||+++++++|||||||||++|+.++.|||+
T Consensus 396 i~Arel~~~Il~~~~etG~Pyi~f~D~~N~~~~~~~~g~I~~SNLC~EI~lp~~~~~~~vCnL~SiNL~~~v~d~~~D~~ 475 (822)
T PRK06539 396 IGAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHLADGEIDWA 475 (822)
T ss_pred ECHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCCCCHH
T ss_conf 63999999999999985896475221210135777678846565877877778888745897001068766356423167
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85589999999976531121000188888644331000211118899997296323378899999999998577999789
Q gi|254780502|r 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 (954)
Q Consensus 620 ~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~ 699 (954)
+|+++|+++|||||||||+|.||+|+++++|+++|+||||||||||+|+++||||+|+||++|+++|||+|+|+|++||+
T Consensus 476 ~l~~~v~~avr~LDnvID~~~yp~~~a~~~n~~~R~IGLGvmGlad~L~~~gi~y~S~eA~~l~~~i~e~i~~~a~~aS~ 555 (822)
T PRK06539 476 LLEESTRLAVRQLDNLIDITCSSVKEADFSNQQNRAIGLGVMGFTDLVERLGYSYESEEAYDLIDRIMEHISYAAIDESA 555 (822)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78888999999888877413352999999988348710463089999998599868999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCC-CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf 87531177887667812138762446630055225-33454021027289999999841204430110774368778388
Q gi|254780502|r 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 (954)
Q Consensus 700 ~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~-~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~ 778 (954)
+||+|||+||.|+||+|++|++|+|.|......++ ...+.....+||+.||++| ++|||||+++|||||||||+|+||
T Consensus 556 eLAkErG~~p~f~gS~~~~G~l~~d~~~~~~~~~g~~~~~~~~~~~dW~~Lr~~i-k~G~RNs~l~AiAPT~S~S~I~g~ 634 (822)
T PRK06539 556 DLAEERGAYPNFEGSRWSKGMVPIDSIALVEADRGVPVSVNRTTRLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGT 634 (822)
T ss_pred HHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCCEECCCCCHHHHHHCCC
T ss_conf 9999759998888882112776333565544431674225853120499999875-507325140535883888886388
Q ss_pred CCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHH
Q ss_conf 98847560120345326761366465899989985898689999998519962776448867886505222068899999
Q gi|254780502|r 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 (954)
Q Consensus 779 s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~ 858 (954)
|+||||+|+|+|+|++++|+|+++||+|+++|+++|+| +++++.+...+||||+++.+|+++|.+|+|||||+|+|||+
T Consensus 635 s~gIEP~~sn~y~r~~~~G~f~~vN~~l~~~L~~~g~w-~~~~~~i~~~~Gsvq~i~~lp~~~k~~ykTa~eI~~~~~I~ 713 (822)
T PRK06539 635 TPGLDPQFSQIFSRSTSSGKFLEVNRNLVLDLKELGLW-ETVREDILRSQGDIQQIAAIPDEIKANYRTSFQLSPYAFLE 713 (822)
T ss_pred CCCCCCCCCCEEEEECCCCEEEEECHHHHHHHHHCCCC-HHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHCCHHHHHH
T ss_conf 87637571212578505643689777789999984873-99999999708986685668988997535096589999999
Q ss_pred HHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCC---------CCCCCC
Q ss_conf 99852063005232047548999899999999999729867979658841111210124444321---------112345
Q gi|254780502|r 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL---------NAVPVT 929 (954)
Q Consensus 859 ~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~~ek~t~~~~~~~~---------~~~~~~ 929 (954)
|||+||||||||||+|||+++++.+++.++|++|||+||||+||+||+++++++|+|++...... .+....
T Consensus 714 ~aA~rQ~~IDQsqS~nl~~~~~~~~~l~~~y~~AWk~GlKT~YYlrt~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 793 (822)
T PRK06539 714 VAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKTTYYLHMKPRHTAEQSTVKVNKSTEADGGNRRGFAGFGAG 793 (822)
T ss_pred HHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99986676520023502308999999999999999818441102478633340320213451000236876676676788
Q ss_pred CCCCCCCCCCCCCCCCCCC----CCCCCC
Q ss_conf 5555543234542236888----500069
Q gi|254780502|r 930 DPNSSTHSLGIPSSCTSDT----ECEVCQ 954 (954)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~p----~CeaCq 954 (954)
.+.+.+.+......|..+| .|++||
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (822)
T PRK06539 794 VPPAVPASAAPASTATAEAPAPQSAPAPR 822 (822)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99888876577667667899987889998
No 5
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1778.49 Aligned_cols=719 Identities=42% Similarity=0.713 Sum_probs=674.5
Q ss_pred EEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
Q ss_conf 28980599760259899999999985166668999999989730378988899999999999987441-87714677999
Q gi|254780502|r 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARF 223 (954)
Q Consensus 145 l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~lydgitt~el~~~li~aA~~Li~~-ePdy~~vAaRl 223 (954)
|+|+||||++|+||++||++++.++|.||++|++..|+.++..+|||||||+||++++|++|+++++. ||||++|||||
T Consensus 1 m~ViKRdG~~e~~d~~KI~~~i~~a~~gl~~v~~~~i~~~~~~~lydgitT~eI~~~li~ta~~~is~~~PdY~~lAaRl 80 (788)
T PRK08447 1 ITVIKRNGRTEPLDISKIQKYTSDAVEGLEGVSQSELEVDAKIQFRDKITTEEIQQTLIKTAVDKIDIDTPNWTFVAARL 80 (788)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 95893899881207999999999996789889889999998745679984999999999999985775685499999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999862100333101104467775478889986655767787777517-739999976412101128989999999
Q gi|254780502|r 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILY 302 (954)
Q Consensus 224 ll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~-~dl~~L~~~Id~~RD~~F~Y~Gl~tL~ 302 (954)
++++|||++.+... | ..++.++++|++.+.+.+.+.+ +|+++|+++|+|+||++|+|||++||+
T Consensus 81 ~l~~l~ke~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~l~~~~~le~L~~~I~~~RD~~f~y~g~~~l~ 145 (788)
T PRK08447 81 FLYDLYHKVSGFTG--------------Y-NHLKEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDLQFNYLGIKTLY 145 (788)
T ss_pred HHHHHHHHHCCCCC--------------H-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99999998608765--------------6-89999999877524214645436579999704472443577819999999
Q ss_pred HHHHHC-CCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 976211-4892753889999999965416454536899999999974330358611222100222232110254766413
Q gi|254780502|r 303 DRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 (954)
Q Consensus 303 ~rYllk-~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~ 381 (954)
+|||+| .+|+++|+||+|||||||++|.+|.++..|+++||++||+++|+||||||+||||+++|||||||++++|||+
T Consensus 146 ~~Yl~k~~~~~~~E~PQ~~~mrvA~~~~~~~~~~~~~~~~~Y~~~s~~~~~~~tPtl~nagt~~~qlsSCfl~~v~Dsl~ 225 (788)
T PRK08447 146 DRYLLKDRNNNPIELPQHMFMAIAMFLAQNEQDPQEWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIE 225 (788)
T ss_pred HHHCCCCCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCHH
T ss_conf 84282668999837789999999999715755679999999999875882469865642899998767458268898889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHH
Q ss_conf 58999989999985105444101244311120001278764288999999899999740466677247898356788999
Q gi|254780502|r 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 (954)
Q Consensus 382 ~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~e 461 (954)
|||++++++|++||+|||||++||+|||+||+|+|++|+|+|||||||+||+++++|+|||+||||+|+||++|||||++
T Consensus 226 ~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~~~~g~ssG~vpfmk~~~~~~~~v~QgG~RrGA~~~yl~~wH~DI~~ 305 (788)
T PRK08447 226 GIFDSYKEMALLSKFGGGIGWDWSKVRAMGSYIDGHKNAAGGIIPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDISD 305 (788)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHH
T ss_conf 99999999999850377332333203778971378887379831499999999999973898663058875788551999
Q ss_pred HHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 97302578730233202320203487999985212874787101144410013443789987787521048860577866
Q gi|254780502|r 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 (954)
Q Consensus 462 Fl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~ 541 (954)
||++|+|+|++++|++|+|+||||||+||+||++|++|+||||+++|+|+++||++|+++|.+||+.. ....++|+
T Consensus 306 Fl~~k~n~g~e~~r~~~l~~~v~i~D~FM~rv~~d~~w~Lf~P~~~~~L~~~~G~eFe~~Y~~~e~~~----~~~k~~i~ 381 (788)
T PRK08447 306 FIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFDPYECKDLTELYGEEFEKRYLEYEKDE----KIIKEYIN 381 (788)
T ss_pred HHHHCCCCCCHHHHHHCCHHHHCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC----CCCEEEEC
T ss_conf 99851357735553202606650349999999839986986863575077775268899999987457----75137872
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCC--------------------------
Q ss_conf 889999999999882881278331120222124667034046752001366544--------------------------
Q gi|254780502|r 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------------- 595 (954)
Q Consensus 542 A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~-------------------------- 595 (954)
||+||++|++++||||+||++|+|+||++||++|.|+|++||||+||.||++++
T Consensus 382 Ar~l~~~I~~~~~etG~Pyi~f~D~~N~~np~~~~g~I~sSNLC~EI~q~t~p~~~~~~v~~~~g~~~~~~~e~~v~~d~ 461 (788)
T PRK08447 382 AKELWKKILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKVEFEDGSIEFFEEEELVTTDS 461 (788)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 89999999999998568604660366644986678837862387442467883122100012345422222010003343
Q ss_pred ------------------------------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf ------------------------------33211125540686254344798885589999999976531121000188
Q gi|254780502|r 596 ------------------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 (954)
Q Consensus 596 ------------------------------e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~ 645 (954)
+++|||||||||+++. ++++|+++|+++|||||||||+|+||+|+
T Consensus 462 ~~~~~~~~~~~ld~~~~~~~~~~~~~~~~g~~avCnL~SinL~~~~-----~~~~l~~~v~~avr~LDnVID~n~yP~~~ 536 (788)
T PRK08447 462 GITKPAKKITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSKIN-----TKEDIERVVPIAIRMLDNVIDLNFYPNRK 536 (788)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 2122111012222224532100012356775699865885898732-----76679999999999999866036685399
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHH
Q ss_conf 88864433100021111889999729632337889999999999857799978987531177887667812138762446
Q gi|254780502|r 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 (954)
Q Consensus 646 ~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~ 725 (954)
++.+|+++|+||||||||||+|+++||||+|+||++|+++|||+|+|+|++||++||+|||+||.|+||+|++|+||+|.
T Consensus 537 ~~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLAkerG~~p~f~~S~~~~G~l~~d~ 616 (788)
T PRK08447 537 VKATNLKSRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDEIMEQISYNAIDASSNLAKEKGVYPDFEGSNWSKGIFPIDK 616 (788)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH
T ss_conf 99998987750855012999999769986898999999999999999999999999996589988888822217672432
Q ss_pred HHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHH
Q ss_conf 63005522533454021027289999999841204430110774368778388988475601203453267613664658
Q gi|254780502|r 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 (954)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~ 805 (954)
|+...+............+||+.||++|++||||||+++|||||||||+|+|||+||||+|++.|.|++++|.+.+++|+
T Consensus 617 ~~~~~~~~~~~~~l~~~~~dW~~Lr~~i~k~G~RNs~l~AiaPT~StS~I~g~t~sIEP~~~~~~~~~~~~g~~~~~~p~ 696 (788)
T PRK08447 617 ANNEAKKLTDRGGLFDQACDWQKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGLIPVVVPN 696 (788)
T ss_pred HCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEECCC
T ss_conf 01024555202556653024999999998738251224532884799998099854284813346885235278876898
Q ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECC--CCCHH
Q ss_conf 9998998589868999999851996277644886788650522206889999999852063005232047548--99989
Q gi|254780502|r 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGK 883 (954)
Q Consensus 806 l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~--~~t~~ 883 (954)
+ +++++.+|+|||||+|+|||+|||+||||||||||+|||++ .++.+
T Consensus 697 l-------------------------------~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDQs~S~nl~~~~~~~t~~ 745 (788)
T PRK08447 697 L-------------------------------SPETWQYYTPAYDLDQKLLIKAAAVRQKWIDQGQSLNIFLSLDKASGK 745 (788)
T ss_pred C-------------------------------CHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHH
T ss_conf 8-------------------------------877998708586399899999999875785311137162089999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCC
Q ss_conf 99999999997298679796588411112101244
Q gi|254780502|r 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 (954)
Q Consensus 884 ~i~~~y~~Aw~~GlKt~yy~R~~s~~~~ek~t~~~ 918 (954)
+|.++|++|||+||||+||+||+|+++.++++++.
T Consensus 746 ~l~~~y~~Awk~GlKt~YY~Rt~~~~~~~~~~~d~ 780 (788)
T PRK08447 746 YLNEIYTLAWKLGLKSTYYLRSESPDSEKKNVLDR 780 (788)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCC
T ss_conf 99999999998598879996388520334414878
No 6
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1739.09 Aligned_cols=712 Identities=34% Similarity=0.531 Sum_probs=656.2
Q ss_pred CCCCEEEEECCCCEE-CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHC-CCCH
Q ss_conf 344228980599760-2598999999999851666689999999897--30378988899999999999987441-8771
Q gi|254780502|r 141 IAPKLKIMMDDGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIFSSRTLIEK-EPNY 216 (954)
Q Consensus 141 ~~~~l~V~krDG~~e-~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~--~~lydgitt~el~~~li~aA~~Li~~-ePdy 216 (954)
..-.+.|+||||.++ |+|++||+++|+|||+||.+|+.+.+..++. .++||||+|+||+++||++|++||+. +|||
T Consensus 27 ~~~~~~v~k~~g~~~~p~~~~k~~~~v~~a~~~l~~v~~~~v~~~~~~~~q~~dgi~t~~i~~~li~~a~~li~~~~P~y 106 (785)
T PRK09209 27 QNVSTWITKEAGNRKLPFEPERLERAIDQIHAEFPQLDVEDYKRRVFGFVERKDSVNADDLVDLLIREAEARVDLTTPEW 106 (785)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 76535899468874688688999999999965466899999999998188542896199999999999998658779748
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 46779999999999862100333101104467775478889986655767787777517739999976412101128989
Q gi|254780502|r 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 (954)
Q Consensus 217 ~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~ 296 (954)
+||||||++.+|||++.....-... +....+.+++..+++.|+|.+.|++.|+++|+++|+++|||+||++|+|+
T Consensus 107 ~~vaarl~~~~l~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~y~~~ll~~y~~~e~~~l~~~id~~RD~~f~Y~ 181 (785)
T PRK09209 107 EHFAARLYLRRLYKRASRNRFYDAS-----QKYGSFVGLQESLADRGIYSNDILRRYSKEELIEAGKMIDPERDKLFTYN 181 (785)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC-----CCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 9999999999999998733366633-----35305999999998754240888875179999999714473543477829
Q ss_pred HHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 9999999762114-892753889999999965416454--5368999999999743303586112221002222321102
Q gi|254780502|r 297 GLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 (954)
Q Consensus 297 Gl~tL~~rYllk~-~~~~~E~pQ~~~mrVA~~la~~e~--~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl 373 (954)
|++||++|||+|+ +|+++|+||+|||||||+||.+|. +|.+|+++||++||+++|+||||||+||||+++|||||||
T Consensus 182 g~~~l~~rYl~~~~~~~i~E~PQ~~~m~vAm~l~~~e~~~~r~~~v~~~Y~~lS~~~~~~aTPtL~nagt~~~QlSSCfl 261 (785)
T PRK09209 182 GLYLLATRYLATDSSRGVYELPQERWLTIALYLMQNEPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFI 261 (785)
T ss_pred HHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 89999984571778999846579999999999842476677999999999998568635789852068988987341683
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 54766413589999899999851054441012443111200012787642889999998999997404666772478983
Q gi|254780502|r 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 (954)
Q Consensus 374 ~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~ 453 (954)
++++|||+|||++++++|++||+|||||++||+|||.||+|||++|+|+|+|||||+||+++++|+|||+||||+|+||+
T Consensus 262 ~~vdDsl~sI~~t~~~~a~isk~gGGiG~~~s~IRa~Gs~Irg~~g~ssGvVpf~kv~n~t~~~v~QgG~R~GA~~vyL~ 341 (785)
T PRK09209 262 DTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVKNSSGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLD 341 (785)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 35788777999999999986725867864124468799854788884898223999999999998638986662489978
Q ss_pred CCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCC-----CCCCCCCC-----HHHHHH
Q ss_conf 56788999973025787302332023202034879999852128747871011444-----10013443-----789987
Q gi|254780502|r 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD-----LHDLYGKE-----FEIAYE 523 (954)
Q Consensus 454 ~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~-----L~d~~g~~-----fe~~Y~ 523 (954)
+|||||++||++|+|+||+++|+||+|+||||||+||+||++|++|+||||+++|+ |.|+||++ |+++|+
T Consensus 342 iwH~DI~eFL~lK~n~Gde~~R~~dl~~av~i~DlFMerv~~~~~w~Lf~P~ev~~~~g~~l~d~~~e~~~~~~f~~~Y~ 421 (785)
T PRK09209 342 IWHKDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGNGSFREKYE 421 (785)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHCCCCCCEEECHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 97063999996056677576642137403011999999997199668878331000047427776532302335999999
Q ss_pred HHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCC---------
Q ss_conf 78752104886057786688999999999988288127833112022212466703404675200136654---------
Q gi|254780502|r 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------- 594 (954)
Q Consensus 524 ~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~--------- 594 (954)
+|+..... ..|+|+|++||++|++++||||+||++|+|+||++||++|.|+|++||||+||+||+++
T Consensus 422 ~~~~d~~i----~kk~I~A~eL~~~Il~~~~ETG~Pyi~f~D~~Nr~sp~~~~G~I~~SNLC~EI~~~~~P~~~~~e~~~ 497 (785)
T PRK09209 422 ECVADERI----SRKTVKAIEIMKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMIQEIIS 497 (785)
T ss_pred HHHHCCCC----CCEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99738754----43476299999999999998689637883455535997678967743475113557888643222367
Q ss_pred ----------CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf ----------4332111255406862543447988855899999999765311210001888886443310002111188
Q gi|254780502|r 595 ----------EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 (954)
Q Consensus 595 ----------~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Gla 664 (954)
+|++|||||||||++|+.++ .+.|+++|+++|||||||||+|+||+|+++++|+++|+|||||||||
T Consensus 498 ~~ei~~~~~~Ge~avCnL~SiNL~~~v~~~---~d~l~~~v~~avR~LDnVID~n~yPv~~a~~sn~~~R~IGLGvmGla 574 (785)
T PRK09209 498 GGQIVITKKAGDFVVCNLSSINLGRAVTVG---ADVLERLIPIQVRMLDNVIDLNELPVPQATITNQKYRAIGLGTFGWH 574 (785)
T ss_pred CCCEEECCCCCCEEEEECCCCCHHHHHCCC---CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHCCCCHHHH
T ss_conf 762221146775458624313398873156---01699999999999899772355738999999986124244521699
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHC
Q ss_conf 99997296323378899999999998577999789875311778876678121387624466300552253345402102
Q gi|254780502|r 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 (954)
Q Consensus 665 d~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~ 744 (954)
|+|+++||||+|+||++|++++||+|+|+|++||++||+|||+||.|+||+|++|.+. + .+.+...
T Consensus 575 d~Lak~gi~Y~S~eA~~l~~~i~E~I~y~a~~AS~eLAkErG~yp~F~gS~~s~G~~~-~-------------~~~~~~~ 640 (785)
T PRK09209 575 HLLALKGIHWNSEEAEDYADELYERINYLTIQASMELAKEKGAYPVFRGSDWHTGEYF-R-------------RRDYNSP 640 (785)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-C-------------CCCCCCC
T ss_conf 9999859986898999999999999999999999999997589988889821027621-4-------------4677630
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 72899999998412044301107743687783889884756012034532676136646589998998589868999999
Q gi|254780502|r 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 (954)
Q Consensus 745 dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i 824 (954)
||++||++|++||||||+|+|||||||||+|+|+|+||||+|+++|+|+++.|.+.+++|.+.
T Consensus 641 dW~~Lr~~I~~~GlRNS~l~AiAPT~S~S~I~g~T~gIEP~~~~~y~k~~k~~~~~~~~p~l~----------------- 703 (785)
T PRK09209 641 QWDELAAQVAVNGVRNAYLLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVTAPDLS----------------- 703 (785)
T ss_pred CHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHEEEECCCEEEEECCCCC-----------------
T ss_conf 699999999884844101132388389999759786418686500014405661578569887-----------------
Q ss_pred HHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 85199627764488678865052220688999999985206300523204754-89998999999999997298679796
Q gi|254780502|r 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 (954)
Q Consensus 825 ~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~ 903 (954)
++.++.+++|||||+|.|+|+|+|+||||||||||+|+|+ ++++.++|.++|++|||+||||+||+
T Consensus 704 -------------~~~~~~y~kta~eId~~~~I~~~A~rQk~IDQsiS~Nl~~~~~~~~~~l~~~yl~Awk~GlKT~YY~ 770 (785)
T PRK09209 704 -------------LETWPYYEKGAYKVDQFASIRQNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYV 770 (785)
T ss_pred -------------HHHHHHHCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf -------------6766653132602798999999998824262011174258999999999999999998294130367
Q ss_pred CCCCC
Q ss_conf 58841
Q gi|254780502|r 904 RSRSA 908 (954)
Q Consensus 904 R~~s~ 908 (954)
||++.
T Consensus 771 Rt~~~ 775 (785)
T PRK09209 771 RSNDI 775 (785)
T ss_pred CCCCC
T ss_conf 88888
No 7
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1723.54 Aligned_cols=720 Identities=28% Similarity=0.431 Sum_probs=675.2
Q ss_pred CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHH
Q ss_conf 42289805997602598999999999851666689999999897303789888999999999999874418-77146779
Q gi|254780502|r 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTA 221 (954)
Q Consensus 143 ~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~lydgitt~el~~~li~aA~~Li~~e-Pdy~~vAa 221 (954)
..|+|+||||++|+||++||++++.+||.||++|++..|+.++..+|||||||+||++++|++|++||++| |||++|||
T Consensus 3 ~~m~ViKRdG~~E~~~~~KI~~~i~~a~~gL~~v~~~~i~~~~~~~lyDGitT~eid~~li~~aa~lis~~~Pdy~~lAa 82 (761)
T PRK09103 3 QNLLVTKRDGSTERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 82 (761)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 87289938998715789999999999957887799899999998535799859999999999999984555856999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999986210033310110446777547888998665576778777751773999997641210112898999999
Q gi|254780502|r 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 (954)
Q Consensus 222 Rlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL 301 (954)
||+++++||++.+.|... .+ .+++..+++.|++.+.+.+.|+++|+++|+++|||+||++|+|||++||
T Consensus 83 Rl~~~~l~K~~~~~f~~~----------~~-~~~~~~~~~~g~y~~~ll~~y~~~~~~~L~~~I~~~rD~~f~y~g~~tL 151 (761)
T PRK09103 83 RLAIFHLRKKAYGQFEPP----------AL-YDHVVKLVEMGKYDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQL 151 (761)
T ss_pred HHHHHHHHHHHHCCCCHH----------HH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 999999998753667807----------89-9999986634524399999987999999985658023357780899999
Q ss_pred HHHHHHC--CCCCEEECHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9976211--489275388999999996541645--453689999999997433035861122210022223211025476
Q gi|254780502|r 302 YDRYFLH--INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 (954)
Q Consensus 302 ~~rYllk--~~~~~~E~pQ~~~mrVA~~la~~e--~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~ 377 (954)
++|||+| .+|+++|+||+|||||||+|+.++ ..+.+++++||++||+++|++|||||+|+||+++|||||||++++
T Consensus 152 ~~~YL~k~~~~~~i~E~PQ~~~MrVA~~l~~~~~~~~~~~~~~~~Y~~lS~~~~~~aTPtl~nagt~~~qlsSCfl~~v~ 231 (761)
T PRK09103 152 EGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECG 231 (761)
T ss_pred HHHHCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 98445465568944315699999999987235850216999999999985674047982211789887667637985377
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 64135899998999998510544410124431112000127876428899999989999974046667724789835678
Q gi|254780502|r 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 (954)
Q Consensus 378 Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~ 457 (954)
|||+|||++++++|+++|.|||||++||+|||+||+|+|++|+|+|||||||+||+++.+|+|||+||||+|+||++|||
T Consensus 232 Dsl~~I~~t~~~~a~~sk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpf~kv~n~~~~~v~QgG~R~GA~~vyl~~wH~ 311 (761)
T PRK09103 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPIWHL 311 (761)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 64767999999999997536834110203578997105787623886438999999999997479867633898467651
Q ss_pred CHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCHHHHHHHHHHHHCCCCC
Q ss_conf 899997302578730233202320203487999985212874787101144410013---44378998778752104886
Q gi|254780502|r 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEI 534 (954)
Q Consensus 458 Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~---g~~fe~~Y~~~e~~~~~~~~ 534 (954)
||++||++|+|+|+|+.|++|+|+||||||+||+||++|++|+||||++||+|+|.| |++|+++|.+||.....
T Consensus 312 DI~~Fl~lK~n~G~e~~R~~~l~~~v~i~d~Fm~rv~~~~~w~Lf~P~~~~~l~d~~~~d~~efe~~Y~~~e~~~~~--- 388 (761)
T PRK09103 312 EVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDDSI--- 388 (761)
T ss_pred CHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---
T ss_conf 59999973255785465432178020559999999971998156555336314554444068899999974302663---
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCC-CCCCCEEEECCCCCCCCCCCCC--------CCCCCCCHHHH
Q ss_conf 05778668899999999998828812783311202221-2466703404675200136654--------43321112554
Q gi|254780502|r 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSI 605 (954)
Q Consensus 535 ~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p-~~~~g~I~~sNlC~Ei~l~~~~--------~e~~vCnL~Si 605 (954)
..++|+|++||++|++++||||+||++|+|+||++|| ++|.|+|++||||+||+||+++ +|++|||||||
T Consensus 389 -~kk~i~AreL~~~il~~~~ETG~Pyi~f~D~~N~~~p~~~~~g~I~~SNLC~EI~lpt~p~~~~~d~~ge~avCnL~Si 467 (761)
T PRK09103 389 -RKKRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAF 467 (761)
T ss_pred -CCEEEEHHHHHHHHHHHHHCCCCCCEEECHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf -3048649999999999975038874153576774387788654264057501314677774213577773310233452
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 06862543447988855899999999765311210001888886443310002111188999972963233788999999
Q gi|254780502|r 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 (954)
Q Consensus 606 NL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~ 685 (954)
||+++ .||++|+++|+++|||||||||+|+||+|+++.+|+++|+||||||||||+|+++||||+|+||++|+++
T Consensus 468 NL~~~-----~~~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~~i~y~S~eA~~l~~~ 542 (761)
T PRK09103 468 NLGAI-----NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGVRYSDGSANNLTHK 542 (761)
T ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 64333-----6788899999999999999872056885899999860576031066899999987988699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99998577999789875311778876678121387624466300552253345402102728999999984120443011
Q gi|254780502|r 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 (954)
Q Consensus 686 i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~a 765 (954)
|||+|+|+|++||++||+|||+||.|+||+|++|++|+|.|.... +. ..+....+||+.||++|++||||||+++|
T Consensus 543 i~e~i~y~a~~aS~eLAkErG~~p~f~~S~~~~G~lp~d~~~~~~---~~-~~~~~~~~dW~~Lr~~i~~~GlRNs~l~A 618 (761)
T PRK09103 543 TFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDL---DA-ICNEPLHYDWETLREEIKTHGLRNSTLSA 618 (761)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHCCCC---CC-CCCCCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999999999999739997878880113756354420341---11-35885546999999999984964313611
Q ss_pred CCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHC
Q ss_conf 07743687783889884756012034532676136646589998998589868999999851996277644886788650
Q gi|254780502|r 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 (954)
Q Consensus 766 iAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f 845 (954)
||||||||+|+|+|+||||+++++|+|++++|.+..+.|.+ ++++..|
T Consensus 619 iaPT~S~S~I~g~s~~ieP~~~~~~~k~~~~G~~~~~~p~~--------------------------------~~~k~~y 666 (761)
T PRK09103 619 LMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY--------------------------------ERLKDAY 666 (761)
T ss_pred ECCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCH--------------------------------HHHHHHH
T ss_conf 17706777751828670768342677751477340047757--------------------------------8888888
Q ss_pred CCHHCC-CHHHHHHHHHHHCCHHCCCEEEEEEC-CC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCC
Q ss_conf 522206-88999999985206300523204754-89------99899999999999729867979658841111210124
Q gi|254780502|r 846 ATAFEI-DPMWLIESASRRQKWIDQAQSLNLYL-DE------PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 (954)
Q Consensus 846 ~ta~ei-~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~------~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~~ek~t~~ 917 (954)
+++|+| ++.|+|+++|+||||||||||+|||+ ++ .+.+++.++|++|||+||||+||+||++++...++|++
T Consensus 667 ~~~w~i~~~~~~I~~~a~rqk~IDQsqS~Nl~~~p~~~~~~~~~~~~l~~~~~~AWk~GlKT~YYlRtr~~a~~~~~~~~ 746 (761)
T PRK09103 667 ELLWEMPNNDGYLQLVGIMQKFVDQAISANTNYDPSRFPGGKVPMKQLLKDLLTAYKFGVKTLYYHNTRDGAEDAQDDLQ 746 (761)
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHCCCC
T ss_conf 98850567504799999982546523467554374213567767999999999999758685103546111340112567
Q ss_pred C
Q ss_conf 4
Q gi|254780502|r 918 G 918 (954)
Q Consensus 918 ~ 918 (954)
.
T Consensus 747 ~ 747 (761)
T PRK09103 747 P 747 (761)
T ss_pred C
T ss_conf 2
No 8
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1720.14 Aligned_cols=694 Identities=35% Similarity=0.587 Sum_probs=641.4
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998516666899999998973037----8988899999999999987441-877146779999999999862
Q gi|254780502|r 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMY----DGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVL 233 (954)
Q Consensus 159 ~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~ly----dgitt~el~~~li~aA~~Li~~-ePdy~~vAaRlll~~l~kev~ 233 (954)
++||++++.|||+||++||+.+++.++..+|| |||||+||++++|++|++|+++ ||||++|||||++++|||++.
T Consensus 1 ~~ki~~~v~~ac~gl~~v~~~~v~~~~~~~l~~~~~dgitt~ei~~~~i~~A~~~~~~~~P~y~~~AaRl~~~~l~k~~~ 80 (743)
T PRK07088 1 VEKTKKMCKLACEGIEDCDPLYTELKLRIQLDHIVRDGMTTKEIQKSLIQVALELTKKTEPNWQYVAARLYVFDLYKEVR 80 (743)
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 90699999999687757999999999999764056799869999999999999857867875799999999998999874
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCC
Q ss_conf 100333101104467775478889986655767787777517739999976412101128989999999976211-4892
Q gi|254780502|r 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 (954)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk-~~~~ 312 (954)
....... + .+....+.+++..+++.|+|.+.+.+.|+++|+++|+++|||+||++|+|||++||++|||+| .+|+
T Consensus 81 ~~~~~~~---~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yl~k~~~~~ 156 (743)
T PRK07088 81 INRNYNS---F-GNPYGDYYEFIKKLTEKGLYGEYILENYSKEDIKELEKYIKPERDFLFNYSGIKLLNDRYLVQGFNRE 156 (743)
T ss_pred CCCCCHH---H-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 0367211---0-04489999999998866732699999860999999985657055237781999999985572778998
Q ss_pred EEECHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 753889999999965416454--536899999999974330358611222100222232110254766413589999899
Q gi|254780502|r 313 RIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 (954)
Q Consensus 313 ~~E~pQ~~~mrVA~~la~~e~--~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~ 390 (954)
++|+||+|||||||+||.+|. ++..|+++||++||+++|+||||||+||||+++|||||||++++|||+|||++++++
T Consensus 157 ~~E~PQ~~~mrvA~~l~~~e~~~~r~~~~~~~Y~~~s~~~~~~aTPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~ 236 (743)
T PRK07088 157 ILELPQQMFMGIAMHLAIPEKKEKRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDVVGDSLWGIYKSLDNF 236 (743)
T ss_pred EEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 83567999999999984437752268999999999972766689931102799888775068266898889999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 99985105444101244311120001278764288999999899999740466677247898356788999973025787
Q gi|254780502|r 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 (954)
Q Consensus 391 a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G 470 (954)
|+|||+|||||++||+|||+||+|+|++|+|+|||||||+||+++++|+|||+||||+|+||++|||||++||++|+|+|
T Consensus 237 a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpf~k~~~~~~~~v~QgG~R~GA~avyL~~wH~DI~~Fl~lK~n~G 316 (743)
T PRK07088 237 AKVSKHGGGMGIYMGKIRALGSEIRGFKGASGGVIPWIKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQLKTNNG 316 (743)
T ss_pred HHHHHCCCEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf 99883466433234445779982168888079841089999999999972898664158985687253999995044577
Q ss_pred CHHHHHHCCCHHHCCCHHHHHHHHCC--CCEEEEECCCCC-----CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHH
Q ss_conf 30233202320203487999985212--874787101144-----41001344378998778752104886057786688
Q gi|254780502|r 471 DDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 (954)
Q Consensus 471 ~~~~r~~~~~~av~i~D~Fm~~v~~~--~~w~Lf~P~~~~-----~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~ 543 (954)
||++|+||+|+||||||+||+||++| ++|+||||+++| .|+|+||++|+++|.+|++..... .|+|+|+
T Consensus 317 de~~r~~~l~~~v~ipD~Fm~rv~~n~d~~w~Lf~P~~~~~~~g~~L~d~ygeef~~~Y~~~~~~~~~~----kk~V~Ar 392 (743)
T PRK07088 317 DDRKKAHDIFPGVCYPDLFWKLAENRIDENWSMMCPHEIKKVKGYSLEDYYGEEWEKKYLECVEDDRIP----KRTVSVK 392 (743)
T ss_pred CHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCC----CEEECHH
T ss_conf 377776406303001799999998568876487676312233465425531459999999874257654----4125389
Q ss_pred HHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCC-----------------------CCCC
Q ss_conf 99999999998828812783311202221246670340467520013665443-----------------------3211
Q gi|254780502|r 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVC 600 (954)
Q Consensus 544 ~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e-----------------------~~vC 600 (954)
+||++|++++||||+||++|+|+||++||++|.|+|++||||+||+||+++.+ ++||
T Consensus 393 eL~~~I~~~~~eTG~Pyi~fkD~~Nr~~p~~~~G~I~sSNLCtEI~q~~s~~~~~~~~~~d~~g~~~~~~~~~~ge~~~C 472 (743)
T PRK07088 393 DIVRLIIKSAVETGTPFAFFRDTVNKANPNKHKGMIYSSNLCTEIMQNMSEMELLEEEIIDENGYYEVVQKIKAGDFVVC 472 (743)
T ss_pred HHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 99999999999868853676125443587546791685427601043577000244201355553100013677863887
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 12554068625434479888558999999997653112100018888864433100021111889999729632337889
Q gi|254780502|r 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 (954)
Q Consensus 601 nL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~ 680 (954)
|||||||++++. +|+++|+++|+++|||||||||+|+||+|+++++|+++||||||||||||+|+++||||+|+||+
T Consensus 473 nL~SinL~~~~~---~~~~~l~~~v~~avr~LDnVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~l~~lgi~Y~S~eA~ 549 (743)
T PRK07088 473 NLSSIVLGNVDV---TKDEELEYVIETQIRAMDNVIDLNYYSVPFAEITNKKYRAIGLGTSGYHHMLANNKIRWESEEHI 549 (743)
T ss_pred EHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 526536440455---66477999999999999998603457749999999873057852779999999835531799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999985779997898753117788766781213876244663005522533454021027289999999841204
Q gi|254780502|r 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 (954)
Q Consensus 681 ~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RN 760 (954)
+|+++|||+|+|+|++||++||+|||+||.|+||+|++|.+ ++.++ ....+|++||++|++|||||
T Consensus 550 ~l~~~i~e~i~~~a~~AS~eLAkErG~~~~f~gS~~~~G~~-~~~~~-------------~~~~~W~~Lr~~i~k~G~RN 615 (743)
T PRK07088 550 KFVDKVYEEINYYAIKASMNLAKEKGSYPLFEGSDWETGKY-FELRG-------------YNSERWKKLKEEIKKYGMRN 615 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCC-CCCCC-------------CCHHHHHHHHHHHHHHCCCH
T ss_conf 99999999999999999999999859898888982001872-14467-------------76462999999999838054
Q ss_pred HHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 43011077436877838898847560120345326761366465899989985898689999998519962776448867
Q gi|254780502|r 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 (954)
Q Consensus 761 s~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~ 840 (954)
|+++|||||||||+|+|||+||||+|+++|+++..++-. +. .+|.++++
T Consensus 616 S~l~AiAPT~S~S~I~g~s~gIEPi~~~~~~~~~~g~~~----~~---------------------------~~p~l~~~ 664 (743)
T PRK07088 616 GYITAVAPNGSTATIAGTSEGIDPVMKRFFLEEKKGSIT----PK---------------------------TAPDLNEE 664 (743)
T ss_pred HCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCC----CC---------------------------CCCCCCHH
T ss_conf 302047881899998396877485732566244249855----01---------------------------27765621
Q ss_pred HHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 8865052220688999999985206300523204754-8999899999999999729867979658841
Q gi|254780502|r 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 (954)
Q Consensus 841 ~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~ 908 (954)
..++|+|||||+|+|||+|||+||||||||||+|||+ +++|.+++.++|++|||+||||+||+||+|.
T Consensus 665 ~~~~yktA~eI~~~~~I~maA~rQk~IDQs~S~nl~~~~~~t~~dl~~~y~~Awk~GlKT~YY~Rs~~~ 733 (743)
T PRK07088 665 NFWYYKEAYNIDQQWSVKANGVRQRHIDQGQSFNLYITPEYTMRQIMNLYIEAWKQGVKSIYYVRSKSL 733 (743)
T ss_pred CCCEEECHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCC
T ss_conf 052340072089899999999874656120237156589999999999999999809513005777878
No 9
>KOG1112 consensus
Probab=100.00 E-value=0 Score=1646.52 Aligned_cols=781 Identities=37% Similarity=0.640 Sum_probs=721.6
Q ss_pred EEEEECCCCEECCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 289805997602598999999999851666--689999999897303789888999999999999874418771467799
Q gi|254780502|r 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222 (954)
Q Consensus 145 l~V~krDG~~e~~d~~ki~~~i~~ac~gL~--~v~~~~i~~~~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAaR 222 (954)
|.|+||||++|++.++||..||..+|+||+ -||+..+.++++.++|.|+||.|++.+...+|++|+++||||..+|||
T Consensus 1 myv~krdgr~E~v~fDkItsRi~~l~ygL~~d~vD~v~vt~kvisG~y~gvTt~eldnlaaEtaA~mtt~HPdYa~laaR 80 (796)
T KOG1112 1 MYVVKRDGRQEKVHFDKITSRIQKLSYGLDMDHVDPVEVTQKVISGVYEGVTTVELDNLAAETAASMTTKHPDYAILAAR 80 (796)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 94003566545520768999999885278825468999999998543278336758778898877764079608999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999999986210033310110446777547888998665576778777751---7739999976412101128989999
Q gi|254780502|r 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM---DFDLVYLANDLKYERDFAFEYLGLQ 299 (954)
Q Consensus 223 lll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~---~~dl~~L~~~Id~~RD~~F~Y~Gl~ 299 (954)
|.++++||++...|++....++.+ ..-..|....++.+... ..+.++|+++|.|+||+.|+|||++
T Consensus 81 IavSnlHk~T~k~Fs~vi~~l~~~-----------vn~~tgk~apmisd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfk 149 (796)
T KOG1112 81 IAVSNLHKQTKKVFSEVIEDLHNH-----------VNPHTGKHAPMISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFK 149 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEECCHH
T ss_conf 999888898899999999999986-----------484458868730089999998444442131464255530001266
Q ss_pred HHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCC-CC
Q ss_conf 99997621148927538899999999654164545368999999999743303586112221002222321102547-66
Q gi|254780502|r 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 (954)
Q Consensus 300 tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v-~D 378 (954)
||.+.||+|.+|++.|+||+|+||||+|+|.. ..+.+++.|++||.++|+|||||||||||++||||||||+++ +|
T Consensus 150 TLerSYLlking~v~ERPQhm~MRVa~gIH~~---Die~aietYnLmS~ryfTHAsPTLfnagt~rPQlsSCFL~tmk~D 226 (796)
T KOG1112 150 TLERSYLLKINGEVAERPQHMLMRVALGIHGE---DIEAAIETYNLMSERYFTHASPTLFNAGTPRPQLSSCFLLTMKDD 226 (796)
T ss_pred HHHHHHHHHHCCCHHCCHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 88888888728850037476767864310334---489999999876543420478256526899854321178875462
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCC
Q ss_conf 4135899998999998510544410124431112000127876428899999989999974046-667724789835678
Q gi|254780502|r 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHI 457 (954)
Q Consensus 379 sl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG-~RrGA~~~~l~~wH~ 457 (954)
|++|||+++++||+|||.+||||+++++||+.||+|+||||+|.|+||++++||+|+++|+||| +|+||+++||++||.
T Consensus 227 SIeGiydtlkqcA~IsKsaGGIGl~vh~IRatGs~i~gTnGtSNGliPmirV~NntaRYvdQGg~kRpGafAiyLEPWHa 306 (796)
T KOG1112 227 SIEGIYDTLKQCAMISKSAGGIGLNVHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFAIYLEPWHA 306 (796)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCEEEEEECHHHH
T ss_conf 06789999998665200267413777664125767745798777733021654132467525798788616998252577
Q ss_pred CHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89999730257873023320232020348799998521287478710114441001344378998778752104886057
Q gi|254780502|r 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 (954)
Q Consensus 458 Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~ 537 (954)
||+|||++|+|+|.++.|++|+|+|+||||+||+||++|++|+||||+++|+|+|+||+||+.+|.+||+.+ +..
T Consensus 307 difdFlelrKn~G~Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEkeg-----r~~ 381 (796)
T KOG1112 307 DIFDFLELRKNTGKEEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKEG-----RGK 381 (796)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_conf 799999987425837777888899883019999988518962777886689567777689999999998716-----644
Q ss_pred EEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCC
Q ss_conf 7866889999999999882881278331120222124667034046752001366544332111255406862543-447
Q gi|254780502|r 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQF 616 (954)
Q Consensus 538 k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~-~~~ 616 (954)
|+|+|..||..|++++.|||.||++|||.|||.++|+|+|+|+|||||+||..|++++|++||||+||.|.+||+. ..|
T Consensus 382 k~vkAqklW~aIleaQ~ETGtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASiaLp~fv~~~~~y 461 (796)
T KOG1112 382 KTVKAQKLWYAILEAQVETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPMFVTPEKTY 461 (796)
T ss_pred CEEEHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCEEEECCHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCCCCC
T ss_conf 04328999999998764059844884022344221124551220203477751068762234224765212200643212
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98885589999999976531121000188888644331000211118899997296323378899999999998577999
Q gi|254780502|r 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 (954)
Q Consensus 617 D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~ 696 (954)
||++|++++++.+|.|+.|||+|+||+|+++++|+|||||||||+||||+|+.|++||+|+||+.++.+|||+|||.|++
T Consensus 462 dF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~ale 541 (796)
T KOG1112 462 DFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALE 541 (796)
T ss_pred CHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999999999985110133137640467664145568731032058889999738778767778889999999999988
Q ss_pred HHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 78987531177887667812138762446630055225334540210272899999998412044301107743687783
Q gi|254780502|r 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 (954)
Q Consensus 697 aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~ 776 (954)
|||+||+.-|+|+.|+||+-|+|+|++|+|+. ..+..|||+.||++|.+||+|||.++|.|||+|||+|+
T Consensus 542 AScelA~~eGpyetyeGSPvSkGilq~dmw~~----------~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIl 611 (796)
T KOG1112 542 ASCELAQKEGPYETYEGSPVSKGILQFDMWNV----------KPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQIL 611 (796)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC----------CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHH
T ss_conf 76788874299855578855355003544078----------87764378999999998363200242157874355551
Q ss_pred CCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHH
Q ss_conf 88988475601203453267613664658999899858986899999985199627764488678865052220688999
Q gi|254780502|r 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 (954)
Q Consensus 777 g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~ 856 (954)
|..+++||..+|+|+|++++|+|++|||||++||-++|+|+++|.+.+...+||+|+++.+|+++|++|+|+|||+|+.+
T Consensus 612 GnNE~fEP~tsNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktv 691 (796)
T KOG1112 612 GNNECFEPYTSNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTV 691 (796)
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 58644575434301110004613897689987888726577788878886488504676688899999999999888789
Q ss_pred HHHHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 9999852063005232047548999899999999999729867-97965884111121012444432-111234555555
Q gi|254780502|r 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK-LNAVPVTDPNSS 934 (954)
Q Consensus 857 i~~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~GlKt-~yy~R~~s~~~~ek~t~~~~~~~-~~~~~~~~~~~~ 934 (954)
|+|||.|+.|||||||+|+++.+|+..++..+|+|+||.|||| +||+|+++++.+.|+|++..... ...+...++...
T Consensus 692 i~mAAdRg~~iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~~~ 771 (796)
T KOG1112 692 IDMAADRGAFIDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSKEE 771 (796)
T ss_pred HHHHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEEHHCCCCCCEEEEECCCCCCCEEEEECHHHHCCCCCCCCCCHHHH
T ss_conf 98875235510564334456338875543246752110154345067842421013378865777434422344650556
Q ss_pred C--CCCCCCCCCC-C-CCCCCCCC
Q ss_conf 4--3234542236-8-88500069
Q gi|254780502|r 935 T--HSLGIPSSCT-S-DTECEVCQ 954 (954)
Q Consensus 935 ~--~~~~~~~~~~-~-~p~CeaCq 954 (954)
. ......-+|+ + ++.|++|-
T Consensus 772 e~~~~~~~~~~c~~~n~e~C~mCs 795 (796)
T KOG1112 772 EEDEYNTAVMVCSLDNPEACLMCS 795 (796)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHCC
T ss_conf 776640244301169935755227
No 10
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1614.70 Aligned_cols=749 Identities=30% Similarity=0.475 Sum_probs=622.6
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 64698028973224867999999999987048776432107999999999999999850667898521145489999998
Q gi|254780502|r 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLM 107 (954)
Q Consensus 28 ~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM 107 (954)
-||||||||++||||.+||++||+|||++|+++.. ..+++++++|++.+ +++..++||+|||+||++||
T Consensus 4 ~~~ViKRdG~~e~fd~~KI~~AI~kA~~~~~~~~~-------~~~~~l~~~V~~~l----~~~~~~~ve~IqD~Ve~~Lm 72 (770)
T PRK06406 4 IKEVVKRDGTVVPFEKEKITMAIYKAMLSVKNGSM-------EDAEKLADKVVDRL----KSDERPTVERIQDTVEDVLM 72 (770)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHH
T ss_conf 66387889962675889999999999985359988-------77999999999850----46899989999999999998
Q ss_pred HCC-----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 612-----089999988909999999987642100002344228980599760259899999999985166668999999
Q gi|254780502|r 108 QSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 (954)
Q Consensus 108 ~~g-----~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~ 182 (954)
+.| |++|||+|||||++|+..|+.+...... +|- .+
T Consensus 73 ~~~~~~~~~~~vAk~yiLyRe~r~~~r~~~~~~~~~-----------~d~---~~------------------------- 113 (770)
T PRK06406 73 TSKINGKDFTDVAKSYILYREKRRAIREEKELIGVK-----------DDL---KL------------------------- 113 (770)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCH---HH-------------------------
T ss_conf 768766669999999999999999877776764344-----------420---21-------------------------
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98973037898889999999999998744187714677999999999986210033310110446777547888998665
Q gi|254780502|r 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 (954)
Q Consensus 183 ~~~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~ 262 (954)
.++.+-++.++.|+..++.....++|.++..+...+... ..+|. +..|-+.
T Consensus 114 --------------~~~~~~~l~~ryl~~d~~~~~~e~~~~l~~rva~~~~~~-------------e~~~d--~~~~~~~ 164 (770)
T PRK06406 114 --------------TLNAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGII-------------EALYD--YRRYKKT 164 (770)
T ss_pred --------------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHH--HHHHHHH
T ss_conf --------------078999888755101788667886999999999876567-------------76666--8889886
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCEEECHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 57--6778777751773999997641210112898999999997621-14892753889999999965416454536899
Q gi|254780502|r 263 GV--KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL-HINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 (954)
Q Consensus 263 G~--~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYll-k~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~ 339 (954)
+. ........+...+ .. +.++++. ......+|.+|++||.++ .....++..|+
T Consensus 165 ~~~~~~~~~~~~~~~~~--------------------~~-~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 220 (770)
T PRK06406 165 GKIPENAEVIGKVSRTQ--------------------EE-VLRRAFDYMKEDGILEGTFEEFMDFI---KTKGTSANEYI 220 (770)
T ss_pred HHHHHHHHHHHHCCHHH--------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf 56455367764303426--------------------99-99999876401036666899999999---85135478899
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997433035861122210022223211025476641358999989999985105444101244311120001278
Q gi|254780502|r 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 (954)
Q Consensus 340 ~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G 419 (954)
++||++||+++|+|||||||||||+++|||||||++|+|||+|||++++++|++||+|||||++||+|||+|++|+|++|
T Consensus 221 ~~fy~~~s~~~f~~aTPtl~Nagt~~~qlsSCFl~~v~Dsl~~I~~~~~~~A~isK~GGGiG~~~s~lR~~Gs~I~gt~G 300 (770)
T PRK06406 221 NKFEEVMSSLDFVPNSPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIVGSTKG 300 (770)
T ss_pred HHHHHHHHCCCEECCCCCEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 99999997392115997302089988776415707888788999999999999960578244212345889880289898
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCE
Q ss_conf 76428899999989999974046667724789835678899997302578730233202320203487999985212874
Q gi|254780502|r 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 (954)
Q Consensus 420 ~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w 499 (954)
+|||||||||+||+++.+|+|||+||||+|+||++|||||++||..|.+ +.++.+|+|+||||||+||++|++|++|
T Consensus 301 ~ssG~vpfmkv~d~t~~~v~QgG~RrGA~~~yL~~~HpDI~eFl~~K~~---~~~~~~~~n~sv~i~D~Fm~~v~~d~~~ 377 (770)
T PRK06406 301 VASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFILSKDS---ENKVLSNFNISVGVTDEFFEKLDNDDYV 377 (770)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCC---CCCCCCCCCCCEEECHHHHHHHHCCCCE
T ss_conf 0687001999999999999817998776589971785469999973488---6441003786100278999999769875
Q ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEE
Q ss_conf 78710114441001344378998778752104886057786688999999999988288127833112022212466703
Q gi|254780502|r 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 (954)
Q Consensus 500 ~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I 579 (954)
+||+|++ .+.+|+|+|++||++|++++||||+||++|+|+||++||++|.|+|
T Consensus 378 ~L~~p~~---------------------------~~~~k~i~AreLw~~Il~~~~etG~P~i~F~D~~N~~np~~~~G~I 430 (770)
T PRK06406 378 DLKNPRT---------------------------KKVVKRIKASEIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDI 430 (770)
T ss_pred EEECCCC---------------------------CCEEEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCE
T ss_conf 7430677---------------------------6145566799999999999998789816754653111865566766
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 40467520013665443321112554068625434-47988855899999999765311210001888886443310002
Q gi|254780502|r 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 (954)
Q Consensus 580 ~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGl 658 (954)
++||||+||+|+++++ ||||||||++|+.++ .|||++|+++|+++|||||||||+|+||+|+++++|+++|+|||
T Consensus 431 ~~SNlC~E~~l~~~~~----CNLgSINL~~~v~~~~~~D~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~R~IGL 506 (770)
T PRK06406 431 ESTNPCGEQPLLPYES----CNLGSINLSKYVVDGKDIDFDRLRETVWIATRFLDDVIDANKFPVEQIKKVTRMTRKIGL 506 (770)
T ss_pred EECCCCCCCCCCCCCC----CCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 7257876737899886----403510198885577657899999999999999887630543888999999886487367
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCC
Q ss_conf 11118899997296323378899999999998577999789875311778876678121387624466300552253345
Q gi|254780502|r 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 (954)
Q Consensus 659 Gv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~ 738 (954)
|+|||||+|+++||||+|+||++|+++||++|+|+|++||++||+|||+||.|+||+|.+
T Consensus 507 GvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~I~~~A~~aS~eLAkErG~fp~f~gS~w~~-------------------- 566 (770)
T PRK06406 507 GVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQRLAEERGVFPAWYGSEWEK-------------------- 566 (770)
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--------------------
T ss_conf 752089999975986089999999999999999999999999999868998877773345--------------------
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCC-CEEEECHHHHHHHHHCCCCC
Q ss_conf 40210272899999998412044301107743687783889884756012034532676-13664658999899858986
Q gi|254780502|r 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWD 817 (954)
Q Consensus 739 ~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G-~~~~vn~~l~~~l~~~g~~~ 817 (954)
..+|||||++||||||||||+|+|||+||||+|+++|+|++++| +|.+|||+|+++|+++|+|+
T Consensus 567 ---------------~~~~~RNs~llaIAPTgSiS~i~G~S~gIEP~fa~~y~r~~~~G~~~~~vn~~l~~~l~~~g~~~ 631 (770)
T PRK06406 567 ---------------EGIKMRNSTTTTIAPTGTISIIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRKLGLYS 631 (770)
T ss_pred ---------------CCCCEECCCEEEECCCCHHHHHCCCCCCCCCCHHHHHHEECCCCCEEEEECHHHHHHHHHCCCCC
T ss_conf ---------------15340214203468973077760787775713455642002578513664777899999818981
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCC
Q ss_conf 899999985199627764488678865052220688999999985206300523204754-8999899999999999729
Q gi|254780502|r 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 (954)
Q Consensus 818 ~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~G 896 (954)
++++..+.. +||+|+++ +|+++|++|+|||||+|+|||+|||+||||||||||+|||+ +++|++||.++|++||++|
T Consensus 632 ~~~~~~i~~-~Gsv~~i~-lp~~~k~~f~TA~eI~~~~~V~~~A~~Qk~IDqaiSktln~p~~~t~~dv~~~Y~~Aw~~G 709 (770)
T PRK06406 632 EELMRKVAE-TGNLENID-INEEIKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINMPSDATREDIARAYRMAKDLH 709 (770)
T ss_pred HHHHHHHHH-CCCCCCCC-CCHHHHHHCCCHHHCCHHHHHHHHHHHCCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999974-79845688-9867897583297599899999998866762376618462489899999999999999958
Q ss_pred CCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 8679796588411112101244443211123455555543234542236-888500
Q gi|254780502|r 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECE 951 (954)
Q Consensus 897 lKt~yy~R~~s~~~~ek~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~Ce 951 (954)
|||+||||++|++.-...|......+..+....+ .....+.+.++.|+ .||.|.
T Consensus 710 lKgit~yRdgSk~~qvl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~ 764 (770)
T PRK06406 710 CKGITVYRDKSKTVQVLTAGTDETKKKEEKEVIE-LVTKMPDKYLKIDSTFDPACP 764 (770)
T ss_pred CCEEEEEECCCCCHHHEECCCCCCHHHHHHHHHH-HHHHCCHHHHHCCCCCCCCCC
T ss_conf 9979999688757332202544300244442446-887433776400467799998
No 11
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1490.69 Aligned_cols=658 Identities=28% Similarity=0.422 Sum_probs=575.8
Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHH------HHHHHHHHCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999874418-77146779999999------9998621003331011044677-7547888998665576778777751
Q gi|254780502|r 203 IFSSRTLIEKE-PNYAKVTARFLLEK------LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMM 274 (954)
Q Consensus 203 i~aA~~Li~~e-Pdy~~vAaRlll~~------l~kev~~~~~~~~~~~~~~~~~-~~y~~~f~~~i~~G~~~~~i~~~l~ 274 (954)
..+++++++.+ |||..++|||.+.. ++|+......-........... ....+.+...+++|+|.+.+++.|+
T Consensus 2 ~~~~~~~~~~~~~~y~~~~a~~~~~~~~g~~~~~~d~~a~~~~~~~~v~~~~~~f~~~~~~~~~l~~~g~y~~~~l~~y~ 81 (714)
T PRK08188 2 ATTTAERLSQETMDYHALNAMLNLYDADGRIQFDKDRQAARQYFLQHVNQNTVFFHSLQEKLDYLVEEGYYEEEVLDQYS 81 (714)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 30566560845778899998872648778705532399999999987534221145788999999875850299986579
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-C-CEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 773999997641210112898999999997621148-9-27538899999999654164545368999999999743303
Q gi|254780502|r 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-G-SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 (954)
Q Consensus 275 ~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~-~-~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~ 352 (954)
..++++|.++|.++||..|+|+|+++|+++|++|+. + .++|+||+|||||||+||..+ .++|++||++||+++|+
T Consensus 82 ~~~i~~~~~~~~~~~~~~~~y~g~~~~~~~Y~~k~~~~~~~~E~pq~~~m~val~l~~~~---~~~a~~~y~~~s~~~f~ 158 (714)
T PRK08188 82 RNFVKTLFDHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAQGD---ETLARQLVDEILSGRFQ 158 (714)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCC
T ss_conf 999999999876526751205649999986700327898245568999999998865788---99999999999828846
Q ss_pred CCCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 586112221002-2223211025476641358999989999985105444101244311120001278764288999999
Q gi|254780502|r 353 CSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 (954)
Q Consensus 353 ~atPtl~Nagt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~ 431 (954)
||||||+||||+ ++|||||||++|+|||+|||++++++|+|||+|||||++||+|||+||+|+|++|+|+|||||||+|
T Consensus 159 ~aTPTl~NaG~~~~~qlsSCFll~v~Dsle~I~~t~~~~a~isK~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~mkv~ 238 (714)
T PRK08188 159 PATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 238 (714)
T ss_pred CCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 58971420899998877626847888888999999999999975267676440046778984068798169701099999
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 89999974046667724789835678899997302578730233202320203487999985212874787101144410
Q gi|254780502|r 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 (954)
Q Consensus 432 n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~ 511 (954)
|+++.+|+|||+||||+|+||++|||||++||++|+|+|||++|++|+|+||||||+||+||++|++|+||||++++
T Consensus 239 ~~t~~~v~QgG~R~GA~avyL~~wHpDI~eFL~~K~n~gde~~R~~~l~~~v~ipDlFme~v~~~~~~~Lf~P~~~~--- 315 (714)
T PRK08188 239 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDMYLFSPYDVE--- 315 (714)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHCCCCEEEECCCCCH---
T ss_conf 89999986289876713899898744699999863568846764301521101278999977427755972676226---
Q ss_pred CCCCCCHH-----HHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCC
Q ss_conf 01344378-----9987787521048860577866889999999999882881278331120222124667034046752
Q gi|254780502|r 512 DLYGKEFE-----IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 (954)
Q Consensus 512 d~~g~~fe-----~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~ 586 (954)
++||..|+ ++|.++++..... .++|+||+||++|++++||||+||++|+|+||+.||+. |+|++||||+
T Consensus 316 ~~yg~~f~d~~~~e~y~~~~~~~~i~----k~~i~AreL~~~I~~~~~ETG~Pyi~f~D~~Nr~np~~--G~I~~SNLCt 389 (714)
T PRK08188 316 RVYGKPFADISITEKYDEMVDDARIR----KKKINAREFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCS 389 (714)
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCC----CEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCC--CCCCCCCCCC
T ss_conf 55286300005799999998577744----30762999999999999984896388615343239977--8520134774
Q ss_pred CCCCCCCCCC------------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH
Q ss_conf 0013665443------------3211125540686254344798885589999999976531121-00018888864433
Q gi|254780502|r 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTH 653 (954)
Q Consensus 587 Ei~l~~~~~e------------~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n-~yp~~~~~~~~~~~ 653 (954)
||.+++++++ ++|||||||||+++ +|+++|+++|+++|||||||||++ +||+|+++++|+++
T Consensus 390 EI~q~~~p~~~~~~~~y~~~g~~~~CNLgSiNL~~~-----~d~~~l~~~v~~avr~LdnViD~~~~~pvp~~~~~n~~~ 464 (714)
T PRK08188 390 EILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHT-----MDSPDFGRTVETAIRALTAVSDMSHIRSVPSIEKGNAAS 464 (714)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 522468831135554434467600344453102320-----788899999999999999988641368857999988744
Q ss_pred HHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHCCCCCHHHHHCC---
Q ss_conf 10002111188999972963233788999999999985779997898753117-78876678121387624466300---
Q gi|254780502|r 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL--- 729 (954)
Q Consensus 654 R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS~~~~G~~~~d~~~~~--- 729 (954)
|+||||+|||||+|+++||||+|+||++|+++|||+|+|+|++||++||+||| +||.|++|+|++|.+ ++.+...
T Consensus 465 R~IGLGvmGlad~La~~gI~y~S~EA~~l~~~ife~I~y~A~~AS~eLAkErG~~f~~F~~S~y~~G~~-f~~y~~~~~~ 543 (714)
T PRK08188 465 HAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFKGFEQSKYASGEY-FDKYTQQDWQ 543 (714)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-HHCCCCCCCC
T ss_conf 774425216999999779987999999999999999999999999999998586888878880002662-2103531236
Q ss_pred ---HHHCC---CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCC-CCEEEE
Q ss_conf ---55225---33454021027289999999841204430110774368778388988475601203453267-613664
Q gi|254780502|r 730 ---AEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVV 802 (954)
Q Consensus 730 ---~~~~~---~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~-G~~~~v 802 (954)
...+. ...+..+..+||++||++|++||+|||+++|||||||||+|+|+|+||||+++++++|+... |.+.+.
T Consensus 544 p~~~~v~~lf~~~gv~~p~~~dW~~Lr~~I~k~GlRNs~L~AiaPT~SiS~I~g~t~sIePi~s~i~~rk~g~~g~v~~~ 623 (714)
T PRK08188 544 PKTAKVRELFARAGITIPTQEDWAALRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYP 623 (714)
T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEECCCCCHHHHCCCCCCCCCCHHHEEEEECCCCCEEEEC
T ss_conf 53046777640157788725559999999987161421002147842189874887542501210046414632048502
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCC
Q ss_conf 658999899858986899999985199627764488678865052220688999999985206300523204754-8999
Q gi|254780502|r 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPS 881 (954)
Q Consensus 803 n~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t 881 (954)
+ |.++++.+++|+|||||+|+|+|+|+|+||||||||||+|||+ +++|
T Consensus 624 ~-------------------------------p~l~~d~~~~yktA~eI~q~~iI~~aA~rQk~IDQsqS~nL~~p~~~t 672 (714)
T PRK08188 624 A-------------------------------PFMTNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTAT 672 (714)
T ss_pred C-------------------------------CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHCCCCEECCCCCC
T ss_conf 7-------------------------------766877887742698489999999999874777511178222389999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 8999999999997298679796588411
Q gi|254780502|r 882 GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 (954)
Q Consensus 882 ~~~i~~~y~~Aw~~GlKt~yy~R~~s~~ 909 (954)
.++|.++|++|||+||||+||+|+++.+
T Consensus 673 ~~dl~~~~~~AWk~GlKTlYY~Rtr~~~ 700 (714)
T PRK08188 673 TRDINKAQIYAWRKGIKTLYYIRLRQMA 700 (714)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9999999999998196603650035343
No 12
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit; InterPro: IPR013346 This entry represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen . E. coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains , ). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.; GO: 0005971 ribonucleoside-diphosphate reductase complex.
Probab=100.00 E-value=0 Score=1481.72 Aligned_cols=611 Identities=46% Similarity=0.770 Sum_probs=582.1
Q ss_pred HHHHHHHHHHHHHCC--CCCEEECHHHHHHHHHH-HHHCCCCC-CHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 899999999762114--89275388999999996-54164545-368999999999743303586112221002222321
Q gi|254780502|r 295 YLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAM-GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 (954)
Q Consensus 295 Y~Gl~tL~~rYllk~--~~~~~E~pQ~~~mrVA~-~la~~e~~-~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsS 370 (954)
|+|+++|+++|+++. .+.++|+||++|||||| +++..+.+ +..+++.||++||.++++||||||+|+||+++||||
T Consensus 1 ~~G~~~l~~~Y~~~~~~~~~~~e~~q~~~~~~a~~~~~~~~~~~~~~~~~~~Y~~~s~~~~~~aTP~l~n~g~~~~~l~S 80 (685)
T TIGR02506 1 YMGLKELYNRYLLRKAATGAIYESPQEAYMRVAMLGLASLEPDTRLADAIRFYDLLSRLKISPATPTLFNAGTKKGQLSS 80 (685)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 91036633356432110464121077899999999973278505799999999997568523576223678656886214
Q ss_pred CCCCCC-CCC-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 102547-664-135899998999998510544410124431112000127876428899999989999974046667724
Q gi|254780502|r 371 CFLTTV-PDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 (954)
Q Consensus 371 Cfl~~v-~Ds-l~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~ 448 (954)
|||+.+ .|| +++|++.+.++++++|.|||||+++|++|+.|++|||+++.|+|+|||||++|+++.++||||+|+||.
T Consensus 81 CfL~~~r~~~~l~~I~~~~~~~~~l~~~~GGiG~~~~~~R~~G~~I~g~~~~s~G~~p~~K~~~~~~~a~nQgg~R~Ga~ 160 (685)
T TIGR02506 81 CFLLDVRMDDELESIYKAIDDVAQLSKHGGGIGLNLSKLRAIGSPIRGTNNKSSGIIPFLKLLDSSVEAVNQGGKRPGAV 160 (685)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 78842668887778999999999998617976864234013586415777767760125889989999972068755406
Q ss_pred EEEEECCCCCHHHHHHHCCCCC--CHHHHHHCCCHHHCCCHHHHHHHHC----CCCEEEEECCCCCCCCCCCC-----CC
Q ss_conf 7898356788999973025787--3023320232020348799998521----28747871011444100134-----43
Q gi|254780502|r 449 CAYLETWHIDVEEFLDLRKNTG--DDRRRTHDMNTANWIPDLFMKRVTQ----NAGWTLFSPDEVSDLHDLYG-----KE 517 (954)
Q Consensus 449 ~~~l~~wH~Di~eFl~~k~n~G--~~~~r~~~~~~av~i~D~Fm~~v~~----~~~w~Lf~P~~~~~L~d~~g-----~~ 517 (954)
|+||++|||||++||++|+++| ||++|++++|+||||||+|||||++ |++|+||||+++|+|+++|| ++
T Consensus 161 avYLe~wH~di~~FL~~k~~~g~~~~~~R~~~~~~g~~~pDlFmkr~~~~~ngd~~W~LFsP~dv~~l~~~~g~d~~~~~ 240 (685)
T TIGR02506 161 AVYLEVWHPDIEEFLELKKNNGGADERRRADNLFYGLWIPDLFMKRVEEDANGDKDWTLFSPYDVPGLYELYGADLYEEE 240 (685)
T ss_pred EEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEECCHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCCCHHHH
T ss_conf 88658420238999962778889871010033762012142899999942578941786474765335022248703467
Q ss_pred HHHHHHHHHHHHCCCCCEEEE-EEEHHHHHHHHHHHHHHHCCCEEEEECHHH-CCCCCC-CCCEEEECCCCCCCCCCCCC
Q ss_conf 789987787521048860577-866889999999999882881278331120-222124-66703404675200136654
Q gi|254780502|r 518 FEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCN-IRSPQQ-HVGVVHSSNLCTEITLNSSS 594 (954)
Q Consensus 518 fe~~Y~~~e~~~~~~~~~~~k-~i~A~~l~~~i~~~~~etG~P~i~f~D~~N-~~~p~~-~~g~I~~sNlC~Ei~l~~~~ 594 (954)
||+.|.+++...+.++....+ +|+||+||+.|++++++||+|||+|+|++| ++||.+ +.+.|++||||+||+||++.
T Consensus 241 fe~~Y~~~~~~~~~~~~~~~~~~v~ar~l~~~~~~~~~~TG~PYi~fkD~~N~~~~~~~~~~~~i~~SNLC~EI~~~~~~ 320 (685)
T TIGR02506 241 FEEEYERLEKEVEARKKLKKKKKVSARDLFKKILRTRVETGRPYILFKDAVNNKHNPNKTGGGAIKMSNLCTEILQPTDD 320 (685)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCCCCCCEECCCCCEEEEEECCC
T ss_conf 99999999851133454522884009999999999999849950331010145446410267622024350556540567
Q ss_pred C------------------CCCCCCHHHHHHHHHCCCC------------------CCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4------------------3321112554068625434------------------479888558999999997653112
Q gi|254780502|r 595 E------------------ETAVCNLGSINLLAHFANN------------------QFDYDKLASTIRTAVRVLDNVIDI 638 (954)
Q Consensus 595 ~------------------e~~vCnL~SiNL~~~v~~~------------------~~D~~~l~~~v~~avr~LDnVId~ 638 (954)
+ |++|||||||||++|+.++ .|||+.|+++|++|||+||+|||+
T Consensus 321 ~~~~~~l~~~d~~k~~~ige~~vCNL~S~nL~~~~~~~~~~~~l~T~~n~e~~p~~~fD~~~l~~~~~~a~~~ld~~id~ 400 (685)
T TIGR02506 321 SEKITDLYRTDAVKEDPIGETAVCNLASVNLANFVLEDEAEGRLETYENAEKDPTGEFDFEKLEEAVRIAVRFLDNVIDL 400 (685)
T ss_pred CCCCCCCEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 65444430012001214742265114666667550676656740002666578741257789999999999988876523
Q ss_pred CCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCH
Q ss_conf 10001888886-443310002111188999972963233788999999999985779997898753117--788766781
Q gi|254780502|r 639 NCHTIEKAKKS-NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSL 715 (954)
Q Consensus 639 n~yp~~~~~~~-~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG--~~~~f~gS~ 715 (954)
++||++.+... |+++|+||||||||||+|+++|++|+|+||++|+++|||.|+|+|+++|++||||+| +||.|++|+
T Consensus 401 ~~yp~~~~~~~~n~~~RsiGiGv~Gl~d~l~~~~~~Y~S~ea~~~~~~ife~~~Y~a~~~S~~LAKE~G~~~~~~F~~S~ 480 (685)
T TIGR02506 401 QNYPTAPAAKSANQRRRSIGIGVMGLHDVLAKLGLPYDSEEARALNDRIFEAIYYYAIKASAELAKEKGKRPYPGFEGSK 480 (685)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 78983689998876116734133017999996588988988999999999999999999999999867888888789874
Q ss_pred HHCCCCCHHHHHCCHHHCCC--CCCCCHHH----CCHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf 21387624466300552253--34540210----27289999999841-2044301107743687783889884756012
Q gi|254780502|r 716 WDQGVFPIDSIGLLAEVRDE--LAMNRTSR----LPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 (954)
Q Consensus 716 ~~~G~~~~d~~~~~~~~~~~--~~~~~~~~----~dW~~Lr~~i~~~G-~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~ 788 (954)
|++|+||+|.|....+.+.. ..++++.. .||+.|+++|++|| ||||+++|||||+|||+|+|||+||||+|++
T Consensus 481 ~~~G~l~~d~~~~~~~~~~~~~~~v~~~~~~~~~~~W~~L~~~ik~~G~~rNs~l~A~aPTaS~S~~~g~t~si~P~~~~ 560 (685)
T TIGR02506 481 YAKGLLHYDTWEKTIDPLTEKVKLVDRTSKVPTEEDWEALRERIKEYGMLRNSQLTALAPTASSSQITGVTESIEPVFSN 560 (685)
T ss_pred CCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEHHHHCCCCCHHHHHHHCCCCCCCCCCCE
T ss_conf 55200002330025321367403530443446722379999999972660005441017631312542455554664130
Q ss_pred EEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHC
Q ss_conf 03453267613664658999899858986899999985199627764488678865052220688999999985206300
Q gi|254780502|r 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 (954)
Q Consensus 789 ~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~ID 868 (954)
+|+|++++|+|+++|.+|+++|+++|+|+++++ ++....|++|+++++|++++..|+|||||||+++|+|+|+||||||
T Consensus 561 ~f~k~~~~gef~~~N~~L~~~L~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~yktA~~~d~~~~i~~~A~rq~fvD 639 (685)
T TIGR02506 561 IFTKKTLSGEFLIPNKYLVKELEELGLWDAERR-DILENVGSIQPILAIPETLKYKYKTAYELDQKALIDMAAARQKFVD 639 (685)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHC
T ss_conf 356753466621420899999974588818999-9997067762021662778874104441686899999997604002
Q ss_pred CCEEEEEECCC-------CCHHHHHHHHHHHHHCCCCE-EEEECCC
Q ss_conf 52320475489-------99899999999999729867-9796588
Q gi|254780502|r 869 QAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 (954)
Q Consensus 869 qsiS~tl~~~~-------~t~~~i~~~y~~Aw~~GlKt-~yy~R~~ 906 (954)
||||+|||+++ ++.++|.++|++|||.|||| +||+|++
T Consensus 640 QsiS~nLfl~~~~~~~~~~~~~~l~~~~~~Awk~GlKTg~YY~r~~ 685 (685)
T TIGR02506 640 QSISLNLFLTENKDEDEKVTAKDLLKLLLLAWKKGLKTGMYYCRSR 685 (685)
T ss_pred CHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 1021300310004654466888999999988873014422100469
No 13
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1435.97 Aligned_cols=582 Identities=38% Similarity=0.588 Sum_probs=542.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 39999976412101128989999999976211489275388999999996541645453689999999997433035861
Q gi|254780502|r 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 (954)
Q Consensus 277 dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atP 356 (954)
+.++|+..|||+||++|+|+|++||.+|||++. |+||+||||||++++ +.++++++||++||+++|+||||
T Consensus 5 ~~~~l~~~id~~rD~~~~y~g~~~L~~~Yll~~-----E~~q~~~~rvA~~~~----~~~~~a~~~Y~~ls~~~f~~atP 75 (600)
T PRK09102 5 NKNMLQINIDRSRDNLLTEFGKATLRDRYLLPG-----ESYQDLFARVASAYA----DDKEHAQRLYDYMSRGWFMPATP 75 (600)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 478985123840112788889999998516899-----999999999999851----48799999999997698146974
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12221002222321102547664135899998999998510544410124431112000127876428899999989999
Q gi|254780502|r 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 (954)
Q Consensus 357 tl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~ 436 (954)
||+|+||+++|||||||++|+||++|||++++++|+++|.|||||++||+|||+|++|+| +|+|||||||||+||+++.
T Consensus 76 ~l~NaGt~~g~lsSCfl~~v~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~~-~G~ssG~v~f~k~~d~~~~ 154 (600)
T PRK09102 76 VLSNGGTDRGLPISCFLNEVEDSLEGIVNLWNENVWLASKGGGIGSYWGNVRSIGEKIRD-NGKTSGIIPFIKVMDSLTL 154 (600)
T ss_pred HHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHH
T ss_conf 664599999982217817789898999999999999985177686404677888871436-8868972779999999999
Q ss_pred HHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 97404666772478983567889999730257873023320232020348799998521287478710114441001344
Q gi|254780502|r 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 (954)
Q Consensus 437 ~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~ 516 (954)
+|+|||+||||+|+||++|||||++||++|+++||+.+|++|+|+||||||+||++|++|++|+||+|++
T Consensus 155 ~v~Qgg~RrGA~~~yl~~~HpDI~eFl~~k~~~gd~~~r~~nl~~~v~v~D~FM~~v~~d~~w~L~~P~~---------- 224 (600)
T PRK09102 155 AISQGSLRRGSAAVYLDISHPEIEEFLDIRRPTGDPNRKALNLHHGVNITDDFMQAVENDDEWDLISPKD---------- 224 (600)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCEEEEECCC----------
T ss_conf 9864897454058997589977999984414478611112135011223999999998599769885588----------
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCC--CC-EEEECCCCCCCCCCCC
Q ss_conf 37899877875210488605778668899999999998828812783311202221246--67-0340467520013665
Q gi|254780502|r 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH--VG-VVHSSNLCTEITLNSS 593 (954)
Q Consensus 517 ~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~--~g-~I~~sNlC~Ei~l~~~ 593 (954)
.+..++|+||+||++|++++||||+||++|+|+||++||+.| .| .|++||||+||+||++
T Consensus 225 -----------------~~~~~~v~AreLw~~I~~~~~etG~Pyi~F~D~~N~~~p~~~~~~G~~I~~SNlC~EI~lp~~ 287 (600)
T PRK09102 225 -----------------KSVIRTVKARDLWIKILETRIETGEPYLLFIDTVNRALPEHYKDLGLTVKASNLCSEITLPTG 287 (600)
T ss_pred -----------------CCEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf -----------------735556639999999999999868718875667762484335415871441687766678875
Q ss_pred -----CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC--CC--CHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf -----44332111255406862543447988855899999999765311--21--0001888886443310002111188
Q gi|254780502|r 594 -----SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--IN--CHTIEKAKKSNHTHRAIGLGLMGFQ 664 (954)
Q Consensus 594 -----~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId--~n--~yp~~~~~~~~~~~R~iGlGv~Gla 664 (954)
++|++|||||||||.+|+ +|+++.++|+++||||||||| ++ .||+++++++++++|+|||||||||
T Consensus 288 ~~~~~~~e~avCnL~SiNL~~~~-----~~~~~~~~v~~~vr~LDnVld~~I~~~~~~~~~a~~~~~~~R~iGLGvmGla 362 (600)
T PRK09102 288 IDHLGEDRTAVCCLSSLNLEYYD-----EWKDTPEFIEDLMRFLDNVLQDFIEKAPDEMERAKYSAMRERSVGLGVMGFH 362 (600)
T ss_pred CCCCCCCCEEEEECCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22468753236520200165410-----1225788999999999998873124586078999999997504410173399
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHC
Q ss_conf 99997296323378899999999998577999789875311778876678121387624466300552253345402102
Q gi|254780502|r 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 (954)
Q Consensus 665 d~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~ 744 (954)
|+|+++||||+|+||++|+++|||+|+|+|++||++||+|||+||.+.++.+
T Consensus 363 d~L~~~gi~Y~S~eA~~~~~~i~e~i~~~a~~aS~~LAkErG~~p~~~~~g~---------------------------- 414 (600)
T PRK09102 363 SFLQSKNIPFESVMAKVWNKKIFKHIREQADEASRELAKEKGPCPDAAGYGV---------------------------- 414 (600)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC----------------------------
T ss_conf 9999818986899999999999999999999999999998789804555483----------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC-CCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHH
Q ss_conf 728999999984120443011077436877838-8988475601203453267613664658999899858986899999
Q gi|254780502|r 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 (954)
Q Consensus 745 dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g-~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~ 823 (954)
..|||+++|||||||||+|+| ||+||||+|+++|+|++.+|+|.++||+|++.|+++|+|+++++..
T Consensus 415 ------------~~RNs~l~aiAPTgSiS~i~g~~S~gIEP~~a~~y~r~~~~G~~~~~n~~l~~~l~~~g~~~~~~~~~ 482 (600)
T PRK09102 415 ------------MERFSHKLAIAPTASISIILGNTSPGIEPIAANYFTHKTLSGSFVVKNKFLEKLLEEKGKNTEEVWSS 482 (600)
T ss_pred ------------HHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEEEEECCCCEEEECHHHHHHHHHCCCCHHHHHHH
T ss_conf ------------43200100016887610103777775002112269998236855886788999999738870889999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 985199627764488678865052220688999999985206300523204754-8999899999999999729867979
Q gi|254780502|r 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 (954)
Q Consensus 824 i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy 902 (954)
|..++||||+++.+|++++.+|+|||||+|+|||+|||+||||||||||+|||+ +++|.++|.++|++|||+||||+||
T Consensus 483 i~~~~Gsv~~~~~l~~~~k~~f~TA~eI~~~~~I~~~A~~Q~~iDqsiS~tl~lp~~~t~~dv~~~y~~Awk~GlKg~YY 562 (600)
T PRK09102 483 ILTNEGSVQHLDFLTDEEKEVFKTAYEIDQRWLIELAADRQKYICQGQSLNLFLPADVSKRDLHKLHFTAWKKGLKSLYY 562 (600)
T ss_pred HHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 98639970367769978986474085299899999999876774253038522289989999999999999849987989
Q ss_pred ECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6588411112101244443211123455555543234542236888500069
Q gi|254780502|r 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 (954)
Q Consensus 903 ~R~~s~~~~ek~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~CeaCq 954 (954)
|||+|+++++|+|++......... ...+.++++|+|||
T Consensus 563 ~Rt~s~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~c~~c~ 600 (600)
T PRK09102 563 CRSKSIQRADKVSHDVLKKDLVAA--------------QAENTDYEECLACQ 600 (600)
T ss_pred ECCCCHHHHHHHCCCHHHCCCCCH--------------HHCCCCCCCCCCCC
T ss_conf 668622211220001443012100--------------00159952143359
No 14
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1431.41 Aligned_cols=653 Identities=26% Similarity=0.423 Sum_probs=559.7
Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999874-418771467799999999998621003331011044677754788899866557677877775177399999
Q gi|254780502|r 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282 (954)
Q Consensus 204 ~aA~~Li-~~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~~dl~~L~ 282 (954)
+.+...+ ..++.|.+..-+..+....++-...- . .+ ...+ .+.+...+++|+|...+++.|+..++++|.
T Consensus 11 ln~~~~~~~~~g~~~~~~d~~a~~~~~~~~v~~~----~-~~---f~s~-~e~~~~l~~~~~y~~~~l~~Y~~e~i~~l~ 81 (722)
T PRK07187 11 LNALTKFKKPDGSYHFDSDKEAVERYLEEHVSPN----Q-MA---FNSL-EEKLAYLVNNNYYEQAILDAYSNDQIKELF 81 (722)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----C-CC---CCCH-HHHHHHHHHCCCCCHHHHHHCCHHHHHHHH
T ss_conf 8778536776886054657999999999973451----4-23---5899-999999997698559999758999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCC--CCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 7641210112898999999997621148--92753889999999965416454536899999999974330358611222
Q gi|254780502|r 283 NDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 (954)
Q Consensus 283 ~~Id~~RD~~F~Y~Gl~tL~~rYllk~~--~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atPtl~N 360 (954)
++|+++||..|+|+|+++||++||+|+. +..+|+||++||+||+++|.. ..+++++||+.||.++|+||||||+|
T Consensus 82 ~~i~~~~~~~~ty~g~~~~~~~Y~lk~~d~~~~~E~~q~~~~~~Al~l~~~---~~~~a~~~~~~~~~~~f~~aTPTl~N 158 (722)
T PRK07187 82 HYAYQQNHRFLNFMGAMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADG---DFTKAFDLLDAILLGRFQPATPTFLN 158 (722)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHEEEECCCCEEEECHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCCCCHHHC
T ss_conf 775133355757477999976335465799957657999999999986378---89999999999983784779972112
Q ss_pred HHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1002-222321102547664135899998999998510544410124431112000127876428899999989999974
Q gi|254780502|r 361 SGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 (954)
Q Consensus 361 agt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~ 439 (954)
|||+ ++|||||||++|+|||+||+++++++|++||.|||||++||+|||+||+|+|++|+|+|||||||+||+++.+|+
T Consensus 159 aG~~~rgqlsSCFl~~v~Dsl~sI~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~Ikg~~g~ssGvvp~mk~~~~t~~~v~ 238 (722)
T PRK07187 159 AGKKRRGEYVSCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIIPVMKLLEDSFSYAN 238 (722)
T ss_pred CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCEECCEECHHHHHHHHHHHHH
T ss_conf 88899887441683476887799999999999998427766113244266898116768740763019999653744211
Q ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH
Q ss_conf 04666772478983567889999730257873023320232020348799998521287478710114441001344378
Q gi|254780502|r 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 (954)
Q Consensus 440 QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe 519 (954)
|||+||||+|+||++|||||++||++|+|+|||++|++|+|+||||||+||+||++|++|+||||++++ +.||..|+
T Consensus 239 QgG~R~GA~avyL~~wH~DI~eFL~~K~~~gde~~R~~~l~~gv~ipDlFmerv~~~~~~~Lf~P~dv~---~~yg~~f~ 315 (722)
T PRK07187 239 QLGQRQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFSPYDIK---RVYGKPMS 315 (722)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEECCCEEEEEECHHHHHHHHCCCCCEEECCCCHH---HHHCCCCC
T ss_conf 479647515999689716599999851668860003225504655578999999819973200763016---66475311
Q ss_pred -----HHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf -----998778752104886057786688999999999988288127833112022212466703404675200136654
Q gi|254780502|r 520 -----IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 (954)
Q Consensus 520 -----~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~ 594 (954)
+.|.++++. ..++ .++|+||+||++|++++||||+||++|+|+||++||++|.|+|++||||+||+||+++
T Consensus 316 d~~~~e~Y~~~~~~---~~i~-k~~I~AreL~~~I~~~~~ETG~Pyi~f~D~vNr~np~~~~G~I~~SNLCtEI~qp~~p 391 (722)
T PRK07187 316 DISITEEYYNLLAN---PAIK-KTYISARKFFQTIAELHFESGYPYILFDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTP 391 (722)
T ss_pred CCHHHHHHHHHHHC---CCCC-CCEECHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 01278999999857---8764-3155299999999999998599548764645544984457814435687551256883
Q ss_pred CC------------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 43------------3211125540686254344798885589999999976531121-0001888886443310002111
Q gi|254780502|r 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLM 661 (954)
Q Consensus 595 ~e------------~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n-~yp~~~~~~~~~~~R~iGlGv~ 661 (954)
++ .+|||||||||++++.+ +++|+++|+++||+||||+|.. ..+.|.++.+|+++|+||||+|
T Consensus 392 ~~~~~d~~~~~~G~~v~CNLgSiNL~~~~~~----~~~~~~~v~~avr~LdnV~~~~d~~~~P~~~~~n~~~R~IGLGvm 467 (722)
T PRK07187 392 STFKEDLSFKKIGEDICCNLGSLNIAKAMES----APHFEQLITTSIRALDRVSRVSDLSCAPSIEKGNAANHAVGLGAM 467 (722)
T ss_pred CCCCCCCCHHHCCCEEEEECCHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 1013432111136501665317679999725----577999999999999999872277558278998776165542241
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCH---------HH
Q ss_conf 188999972963233788999999999985779997898753117788766781213876244663005---------52
Q gi|254780502|r 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA---------EV 732 (954)
Q Consensus 662 Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~---------~~ 732 (954)
|||++|+++||||+|+||++|++++||+|+|+|++||++||+|||+||.|++|+|++|.+ ||.+.... +.
T Consensus 468 Glh~~Lak~~I~y~S~EA~~~~~~ife~I~y~A~~AS~eLAkErG~f~~F~~S~ya~G~~-f~~y~~~~~~~~~p~~~~v 546 (722)
T PRK07187 468 NLHGFLATNHIYYDSKEAVDFTNLFFYAMAYYAFKASNQLAKEKGAFAGFSLSKYADGSY-FDKYTKEDAKKWTPKTAKV 546 (722)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-HHCCCCCCCCCCCCCCHHH
T ss_conf 699999985998699899999999999999999999999999868987877783202763-0002333420025420667
Q ss_pred CC---CCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHH
Q ss_conf 25---334540210272899999998412044301107743687783889884756012034532676136646589998
Q gi|254780502|r 733 RD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 (954)
Q Consensus 733 ~~---~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~ 809 (954)
+. ...+...+.+||++|+++|++||||||+++|||||||||+|+|+|+||||+++++|+|+......++++.+.
T Consensus 547 ~~l~~~~~~~~pt~~DW~~Lre~Ikk~G~RNs~l~AiAPT~SiS~I~g~T~sIePi~s~i~~rk~~~~~~v~~p~~~--- 623 (722)
T PRK07187 547 KELLQDYGFTIPTQADWQALVEDIKKTGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGKLGRIYVPAYK--- 623 (722)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCHHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCCC---
T ss_conf 77775316678732119999999998387733212158822688873878766513354046742655517545433---
Q ss_pred HHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHH
Q ss_conf 99858986899999985199627764488678865052220688999999985206300523204754-89998999999
Q gi|254780502|r 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 (954)
Q Consensus 810 l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~ 888 (954)
-.++..+.+++|||||+|+|+|+|+|+||||||||||+|||+ +++|.++|.++
T Consensus 624 --------------------------l~~~~~~~y~~tA~eIdq~~iI~~aA~rQk~IDQsqS~nLf~~~~~t~~dl~~~ 677 (722)
T PRK07187 624 --------------------------IDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAISLTLFMTDQATTRDLNKA 677 (722)
T ss_pred --------------------------CCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHH
T ss_conf --------------------------587778998646100798999999998707566753151234999899999999
Q ss_pred HHHHHHCCCCEEEEECCCCCH
Q ss_conf 999997298679796588411
Q gi|254780502|r 889 YRQAWLMGLKTTYYLRSRSAT 909 (954)
Q Consensus 889 y~~Aw~~GlKt~yy~R~~s~~ 909 (954)
|++|||+||||+||+|+++.+
T Consensus 678 ~~~Awk~GlKTlYY~Rtr~~~ 698 (722)
T PRK07187 678 YIQAFKQNCASIYYVRVRQDV 698 (722)
T ss_pred HHHHHHHCCCCCEECCCCCCC
T ss_conf 999998196201262035430
No 15
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1419.07 Aligned_cols=609 Identities=26% Similarity=0.410 Sum_probs=542.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CC-EEECHHHHHHHHHHHHHCC
Q ss_conf 888998665576778777751773999997641210112898999999997621148-92-7538899999999654164
Q gi|254780502|r 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GS-RIEMPQAFFMRVAMGLALK 331 (954)
Q Consensus 254 ~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~-~~-~~E~pQ~~~mrVA~~la~~ 331 (954)
+.+...++.|+|.+ +.+.|+..++++|-..+...+...++|+|..++|++|++|++ |+ .+|+||+|+||||+++|..
T Consensus 50 ~~~~~l~~~~~y~~-~~~~y~~~~i~~~~~~~~~~~f~f~~~~~~~k~y~~y~lk~~d~~~~~E~~~~~~~~val~~~~~ 128 (696)
T PRK07632 50 ERLRYLVDNDYYFN-VFDIYSEADLIEVTDYAYSIKFNFASYMSASKFYKDYALKTNDKSQYLEDYEDRVAIVALYLANG 128 (696)
T ss_pred HHHHHHHHCCHHHH-HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999987476999-99858999999999999853887443676999998664121898803248999999999997177
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 545368999999999743303586112221002-2223211025476641358999989999985105444101244311
Q gi|254780502|r 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 (954)
Q Consensus 332 e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~ 410 (954)
..+.|+++|++||+++|+||||||+||||+ +||||||||++|+|||+|||++++++|+|||+|||||++||+|||+
T Consensus 129 ---d~~~a~~~y~~m~~~~f~paTPTl~NaG~~~~gqlsSCFll~v~Dsie~I~~~~~~~a~iSK~GGGvG~~~s~lR~~ 205 (696)
T PRK07632 129 ---DKAKAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAMQLSKIGGGVALNLSKLRAR 205 (696)
T ss_pred ---CHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf ---69999999999984965378861110799998976506833578887899999999999985378576522455779
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHH
Q ss_conf 12000127876428899999989999974046667724789835678899997302578730233202320203487999
Q gi|254780502|r 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 (954)
Q Consensus 411 Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm 490 (954)
||+|+|++|+|+|||||||+||+++.+|+|||+||||.|+||++|||||++||++|+|+||+..|++|+|+||||||+||
T Consensus 206 Gs~Ikgt~g~SsGvVp~mkv~n~~~~~v~QgG~R~GA~avyL~~~HpDI~eFLd~Kk~~gdE~~R~~~l~~gv~IpD~Fm 285 (696)
T PRK07632 206 GEAIKGIKNAAKGVVPVMKLLEGGFSYADQLGQRPGAGAVYLNIFHYDIEEFLDTKKINADEDLRLSTLSIGLIVPSKFF 285 (696)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCHHHH
T ss_conf 99405878724871209999999999997059865624999789735799999833247860002145711010299999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHH
Q ss_conf 98521287478710114441001344--3789987787521048860577866889999999999882881278331120
Q gi|254780502|r 491 KRVTQNAGWTLFSPDEVSDLHDLYGK--EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 (954)
Q Consensus 491 ~~v~~~~~w~Lf~P~~~~~L~d~~g~--~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N 568 (954)
++|++|++|+||||++++++.....+ +|++.|.++++..... .++|+||+||.+|++++||||+|||+|+|+||
T Consensus 286 e~v~~~~~~~Lf~P~~v~~~yg~~~~~~~~~~~Y~~~~~~~~i~----kk~I~Ar~Lw~~I~~~q~ETG~PYilF~D~vN 361 (696)
T PRK07632 286 ELAKEGKDFYMFAPHTVYKEYGVHLDDIDLEEMYDDLVANPNVK----KKKKNAREMLNKIAQTQLESGYPYLMFKDNAN 361 (696)
T ss_pred HHHHCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCC----CCEECHHHHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 99971998376684420354086311133999999997478754----51676999999999999986896289744655
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCC---------CCC---CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 22212466703404675200136654---------433---211125540686254344798885589999999976531
Q gi|254780502|r 569 IRSPQQHVGVVHSSNLCTEITLNSSS---------EET---AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 (954)
Q Consensus 569 ~~~p~~~~g~I~~sNlC~Ei~l~~~~---------~e~---~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVI 636 (954)
+.||++|+|+|++||||+||.|++.+ +++ +|||||||||.+++ ++++++++|++++|+||+||
T Consensus 362 r~np~~~lG~I~~SNLCsEI~q~~~~s~~~~~~~~d~i~~~isCNLgSiNL~~~~-----e~~~~~~~v~~avr~Ld~Vi 436 (696)
T PRK07632 362 RVHPNSNIGQVKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVM-----ESKKFRDSVHSGMDALTVVS 436 (696)
T ss_pred HCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC-----CCCHHHHHHHHHHHHHHHHH
T ss_conf 4187657682896248876344688655576665530011110140014245406-----40169999999999999875
Q ss_pred CCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 121000-1888886443310002111188999972963233788999999999985779997898753117-78876678
Q gi|254780502|r 637 DINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714 (954)
Q Consensus 637 d~n~yp-~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS 714 (954)
|.+.+| +|.++++|+++|+||||+|||||+|+++||||+|+||++|++++|++|+|+|++||++||+||| +||.|+||
T Consensus 437 d~~~~~~~p~i~~~n~~~R~IGLGvmGlad~Lak~~I~Y~S~EA~~~~~~ife~I~y~A~~AS~eLAkErG~~f~~FegS 516 (696)
T PRK07632 437 DVTNIQNAPGVRKANSELHSVGLGAMNLHGYLAKNKIAYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKS 516 (696)
T ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 22236466699998985797563647899999977998799899999999999999999999999999858877777888
Q ss_pred HHHCCCCCHHHHHC---C---HHHCCCC-CCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCH
Q ss_conf 12138762446630---0---5522533-454021027289999999841204430110774368778388988475601
Q gi|254780502|r 715 LWDQGVFPIDSIGL---L---AEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 (954)
Q Consensus 715 ~~~~G~~~~d~~~~---~---~~~~~~~-~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a 787 (954)
+|++|.+ ++.+.. . .+.+..+ .....+.+||++|+++|++||||||+++|||||||||+|+|+|+||||+++
T Consensus 517 ~~a~G~~-f~~~~~~~~~p~~~~v~~l~~g~~~pt~~dW~~Lre~I~k~GlrNs~l~AiaPTgSiS~I~~~t~siePi~s 595 (696)
T PRK07632 517 DYANGKY-FEKYTTQEFEPKFEKVRELFDGMHIPTKEDWKKLQQDVEQYGLYHSYRLAIAPTQSISYVQNATSSVMPIVD 595 (696)
T ss_pred CCCCCCC-HHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 4424730-211452234740455544421577885314999999998706325442023771339988575665686566
Q ss_pred HEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHH
Q ss_conf 20345326761366465899989985898689999998519962776448867886505222068899999998520630
Q gi|254780502|r 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 (954)
Q Consensus 788 ~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~I 867 (954)
+++.|...+|+. ++.+|.++++.+++|+|||||+|+|+|+|+|+|||||
T Consensus 596 ~i~~r~~~~~~~-------------------------------~~~~p~l~~~~~~~ykTA~eI~q~~iId~aA~rQk~I 644 (696)
T PRK07632 596 QIERRTYGNAET-------------------------------YYPMPFLSPQTMWYYKSAYDMDQFKLIDLIATIQTHI 644 (696)
T ss_pred HHHHEECCCCCE-------------------------------EEECCCCCHHHHHHCCHHHHCCHHHHHHHHHHHHCCC
T ss_conf 665300147855-------------------------------8767644744532313086479699999999981775
Q ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 0523204754-899989999999999972986797965884
Q gi|254780502|r 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 (954)
Q Consensus 868 DqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s 907 (954)
|||||+|||+ +++|.+||.++|++||++||||+||+||++
T Consensus 645 DQsqS~nLf~~~~~t~~dl~~~~~yAwk~GlKTlYY~Rt~~ 685 (696)
T PRK07632 645 DQGISTILYVNSEISTRELARLYVYAHHKGLKSLYYTRTKL 685 (696)
T ss_pred CHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEECCCCC
T ss_conf 66420510769988999999999999981832312664787
No 16
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1410.25 Aligned_cols=610 Identities=27% Similarity=0.417 Sum_probs=550.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CC-EEECHHHHHHHHHHHHHCC
Q ss_conf 888998665576778777751773999997641210112898999999997621148-92-7538899999999654164
Q gi|254780502|r 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GS-RIEMPQAFFMRVAMGLALK 331 (954)
Q Consensus 254 ~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~-~~-~~E~pQ~~~mrVA~~la~~ 331 (954)
+.+...++.|+|...+.+.|+..++++|.+.+...++..++|+|...+|++|++|.+ |+ .+|++|+.++.+|+.+|..
T Consensus 55 e~~~~l~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~f~f~s~m~a~kfy~~y~lk~~d~~~~le~~~dr~~~~al~~a~g 134 (720)
T PRK07306 55 EKINYLIENDYIESAFIQKYSPEFIEKLYQFLKAQNFRFKSFMAAYKFYNQYALKTNDGEYYLENFEDRVLFNALYFADG 134 (720)
T ss_pred HHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999997572678999756999999999998644675077888999999875217787830127999999999997187
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 545368999999999743303586112221002-2223211025476641358999989999985105444101244311
Q gi|254780502|r 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 (954)
Q Consensus 332 e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~ 410 (954)
+ +..|.++++.|++++|+||||||+|||++ +||||||||++|+|||+|||++++++|+|||+|||||++||+|||+
T Consensus 135 ~---~~~a~~~~~~~~~~~~~pATPTl~NaG~~~~gqlsSCFll~v~Dsl~~I~~~~~~~a~lSK~gGGvG~~~s~lRa~ 211 (720)
T PRK07306 135 D---EDLAKDLADEMIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGINLSNLREA 211 (720)
T ss_pred C---HHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 2---9999999999984853368871111899999864424505788787899999999998864167476763135558
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHH
Q ss_conf 12000127876428899999989999974046667724789835678899997302578730233202320203487999
Q gi|254780502|r 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 (954)
Q Consensus 411 Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm 490 (954)
||+|+|++|+|+|||||||++|+++.+|+|||+||||.|+||++|||||++||++|+|+|||++|+||+|+||||||+||
T Consensus 212 Gs~Ikg~~G~ssGvvp~~k~~n~t~~~v~QgG~R~GA~avYL~~wH~DI~eFL~lKkn~Gde~~R~~dl~~~v~IpD~Fm 291 (720)
T PRK07306 212 GAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFY 291 (720)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHH
T ss_conf 99656879868656789999998997832488447751799577434599999834557971020322710021299999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCHH--HHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHH
Q ss_conf 98521287478710114441001344378--9987787521048860577866889999999999882881278331120
Q gi|254780502|r 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 (954)
Q Consensus 491 ~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe--~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N 568 (954)
+||++|++|+||||++ +++.||++|+ ..|.+|++..+.++++ .++|+||+||++|++++||||+||++|+|+||
T Consensus 292 ~~v~~~~~w~Lf~P~~---v~~~yG~~f~~~d~~~~Ye~~~~~~~i~-k~~I~Ar~L~~~Il~~q~ETG~PYi~fkD~~N 367 (720)
T PRK07306 292 ELARKNEDMYLFSPYS---VEKEYGVPFNYVDITKEYDELVANPNIT-KTKIKARDLETEISKLQQESGYPYIINIDTAN 367 (720)
T ss_pred HHHHCCCCEEEECCCC---CHHHHCCCCHHHHHHHHHHHHHHCCCCC-EEEEEHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 9997289769877662---0466384100003899999986478854-04777999999999999985898188530431
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCC------------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 2221246670340467520013665443------------3211125540686254344798885589999999976531
Q gi|254780502|r 569 IRSPQQHVGVVHSSNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 (954)
Q Consensus 569 ~~~p~~~~g~I~~sNlC~Ei~l~~~~~e------------~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVI 636 (954)
+.||++ |+|++||||+||.||+++++ .+|||||||||.++++. +.+.++|+++||+|||||
T Consensus 368 r~np~~--G~I~~SNLCtEI~q~~~Ps~~n~~~~~~~~g~~~sCNL~SiNL~~~~~~-----~d~~~~v~~avr~LdnVi 440 (720)
T PRK07306 368 RANPID--GKIIMSNLCSEILQVQTPSLINDAQEYVELGTDISCNLGSTNIVNMMTS-----PDFGRSIETMTRALTFVT 440 (720)
T ss_pred HCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCEEECCCCCHHHHCCC-----CHHHHHHHHHHHHHHHHH
T ss_conf 159878--8046325575524046764346876400046643122065439872674-----047889999999999998
Q ss_pred CC-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 12-10001888886443310002111188999972963233788999999999985779997898753117-78876678
Q gi|254780502|r 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGS 714 (954)
Q Consensus 637 d~-n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS 714 (954)
|. |.+|+|+++++|+++||||||||||||+|+++||||+|+||++|+++|||+|+|+|++||++||+||| +||.|+||
T Consensus 441 D~~ni~~vp~a~~sN~r~R~IGLGvmGlhd~L~k~~Ipy~S~EA~~~n~~iFe~I~y~Al~AS~eLAkErGe~y~~FegS 520 (720)
T PRK07306 441 DSSNIDAVPSIKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESIEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKS 520 (720)
T ss_pred HCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 40288865689997653288120246899999987998699999999999999999999999999999829988776788
Q ss_pred HHHCCCCCHHHH------HCCHHHCCCC-CCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCH
Q ss_conf 121387624466------3005522533-454021027289999999841204430110774368778388988475601
Q gi|254780502|r 715 LWDQGVFPIDSI------GLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 (954)
Q Consensus 715 ~~~~G~~~~d~~------~~~~~~~~~~-~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a 787 (954)
+|++|.+ +|.+ ....+.+..+ .......+||++||++|++||||||+++|||||||||+|.|+|+||||+++
T Consensus 521 ~~~~G~~-f~~~~~~~~~p~~~~i~~~~~~~~~p~~~DW~~Lre~Ikk~GlRNS~llAiAPTaSiS~I~g~t~siePi~s 599 (720)
T PRK07306 521 KYADGSY-FDKYVTGDFVPKSDKVKELFKGIFIPTAEDWEALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITQ 599 (720)
T ss_pred CCCCCCC-CCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_conf 4302645-111133334442055665540467885655999999999718641002120784438876388665442477
Q ss_pred HEEEEE-CCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCH
Q ss_conf 203453-2676136646589998998589868999999851996277644886788650522206889999999852063
Q gi|254780502|r 788 NLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 (954)
Q Consensus 788 ~~y~r~-~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~ 866 (954)
+++.|+ ...|.+.+. .|.++++.+++|+|||||||+|+|+|+|+||||
T Consensus 600 ~i~~R~e~~~g~i~~~-------------------------------~p~L~~d~~~~YKTA~EIdq~~iId~aA~RQk~ 648 (720)
T PRK07306 600 RIEERQEKKIGKIYYP-------------------------------APGLSTDTIPYYTSAYDMDMRKVIDVYAAATEH 648 (720)
T ss_pred HHHHHHHCCCCCEEEE-------------------------------CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 8898874237856621-------------------------------787777789874218507989999999987474
Q ss_pred HCCCEEEEEECCC---------------CCHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 0052320475489---------------998999999999997298679796588411
Q gi|254780502|r 867 IDQAQSLNLYLDE---------------PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 (954)
Q Consensus 867 IDqsiS~tl~~~~---------------~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~ 909 (954)
||||||+|||+.. .|.+++..+|++|||+||||+||+||.+..
T Consensus 649 IDQsqSlNLf~~~~ip~~~y~~k~~~~~~t~r~L~~l~~yAWkkGLKTlYYlRT~~~~ 706 (720)
T PRK07306 649 VDQGLSLTLFMRSTLPKGLYEWKDRTDKMTTRDLSILRNYAFNKGIKSIYYIRTFTDD 706 (720)
T ss_pred CCHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 6564441113367765321122345554359999999999997284526875047765
No 17
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1353.93 Aligned_cols=552 Identities=33% Similarity=0.567 Sum_probs=526.4
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
Q ss_conf 289899999999762114-892753889999999965416454------5368999999999743303586112221002
Q gi|254780502|r 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET------EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 (954)
Q Consensus 292 ~F~Y~Gl~tL~~rYllk~-~~~~~E~pQ~~~mrVA~~la~~e~------~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~ 364 (954)
.|++.+++.|.+|||+|. +|.++|+||+||||||++||..|. +++.|+.+||++|++++|+|+|||||||||+
T Consensus 2 ~ls~nA~~vl~~rYl~kd~~g~~~Etp~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~l~~~~f~p~sPtl~naG~~ 81 (733)
T PRK08665 2 KLTDNALTVLEKRYLKKDEDGKPLETPEDMFRRVARTIAAAELKYDSKADVEALADRFYDLMTSLEFLPNSPTLMNAGRE 81 (733)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 66789999999973712899797469999999999999864101588442999999999999859841699744279999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 22232110254766413589999899999851054441012443111200012787642889999998999997404666
Q gi|254780502|r 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 (954)
Q Consensus 365 ~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~R 444 (954)
++|||||||++|+|||+|||++++++|+++|+|||+|+|||+|||+|++|+|++|+|||||||||+||+++.+|+|||+|
T Consensus 82 ~~qlssCFv~~v~Dsl~~I~~~~~~~a~i~k~GGG~G~~~S~lRp~g~~i~~~~g~ssG~vsfmk~~d~~~~~i~QgG~R 161 (733)
T PRK08665 82 LGQLSACFVLPVGDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKNDVVRSTGGVASGPVSFMRVFDAATETIKQGGTR 161 (733)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99855179526899988999999999998623774201023548898963688984787212999999999797538976
Q ss_pred CCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 77247898356788999973025787302332023202034879999852128747871011444100134437899877
Q gi|254780502|r 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 (954)
Q Consensus 445 rGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~ 524 (954)
|||+|+||++|||||++||++|++.| +.+|+|++|||||+||++|++|++|+||+|++
T Consensus 162 RGA~m~~L~~~HpDI~~Fi~~K~~~~----~~~n~N~sV~i~D~FM~av~~d~~~~L~~p~~------------------ 219 (733)
T PRK08665 162 RGANMGILRVDHPDIMEFIMCKADNG----ELTNFNISVAITEAFMEAVEKDEEYDLINPRT------------------ 219 (733)
T ss_pred CCEEEEEECCCCCHHHHHHHCCCCCC----CCCCCCCCEEECHHHHHHHHCCCCEEEECCCC------------------
T ss_conf 54069997488721999997367768----43533750000899999987799669973678------------------
Q ss_pred HHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 87521048860577866889999999999882881278331120222124667034046752001366544332111255
Q gi|254780502|r 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 (954)
Q Consensus 525 ~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~S 604 (954)
.+.+++|+|++||++|++++|+||+||++|+|++|++||++|.|+|++||||+||+|++++. |||||
T Consensus 220 ---------g~~~~~v~AreLw~~I~~~a~~tgePgi~F~D~iN~~n~~~~~g~I~aTNpC~Eq~l~~~~s----CnLgS 286 (733)
T PRK08665 220 ---------GEVVGRLNAREVFDLIVEMAWENGEPGIVFLDRINRDNPTPHVGEIESTNPCGEQPLLPYES----CNLGS 286 (733)
T ss_pred ---------CEEEEEECHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCEEECCCCCCCCCCCCCCC----EEHHH
T ss_conf ---------80235861999999999999985896320114476469987778340346765757798763----22587
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 40686254344798885589999999976531121000188888644331000211118899997296323378899999
Q gi|254780502|r 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 (954)
Q Consensus 605 iNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~ 684 (954)
|||.+|++++.|||++|+++|+++|||||||||+|.||+|++++.++++|+||||+|||||+|+++||||||+||++|++
T Consensus 287 INL~~~v~~~~~D~e~l~~~v~~avr~LDnvid~~~yPl~~i~~~~~~~R~iGLGv~Glad~L~~lgi~YdS~ea~~~~~ 366 (733)
T PRK08665 287 INLSKMVKDGEVDWEKLKEVVRLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMGWADMLIQLGIPYDSEEAVKLAE 366 (733)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 78999860454789999999999999999998751584799999998468711112669999998387727989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999857799978987531177887667812138762446630055225334540210272899999998412044301
Q gi|254780502|r 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 (954)
Q Consensus 685 ~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~ 764 (954)
+||+.|+++|+++|++||+|||+||.|++|.|.+- ..+|+||+++|
T Consensus 367 ~i~~~i~~~a~~aS~eLA~ErG~Fp~f~~s~~~~~----------------------------------~~~~~RNa~~t 412 (733)
T PRK08665 367 KVMRFINDEGHAASRELAKERGPFPNYAGSIYDKR----------------------------------GLGPMRNATVT 412 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH----------------------------------CCCCCCCCEEE
T ss_conf 99999999999999999996299856352146540----------------------------------64352101256
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCC-CEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 107743687783889884756012034532676-1366465899989985898689999998519962776448867886
Q gi|254780502|r 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 (954)
Q Consensus 765 aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G-~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~ 843 (954)
+||||||||+|+|||+||||+|+++|.|++..| .+..|||+|.+.|+++|+|++++...+.. .|++++++++|++++.
T Consensus 413 tIAPTGTiSl~a~~SsGIEP~Fa~~y~R~~~~g~~~~~vn~~~~~~l~~~g~~~~e~~~~i~~-~g~i~~~~~lp~~~~~ 491 (733)
T PRK08665 413 TIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGTELVEVNPVFEEAAKERGFYSEELMKKIAE-KGSIQGIDEIPEDVRR 491 (733)
T ss_pred EECCCCCHHHHHCCCCCCCCCHHHHEEEEECCCCEEEEECHHHHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCHHHHH
T ss_conf 667887344540677665754133057750468724784578999999818877999999970-2984677668878987
Q ss_pred HCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH-HHH
Q ss_conf 5052220688999999985206300523204754-899989999999999972986797965884111-121
Q gi|254780502|r 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS-VEK 913 (954)
Q Consensus 844 ~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~-~ek 913 (954)
+|+||+||+|.|||+|||+.|||||+|||||+|+ +++|++|+.++|++||++|||++++||++|+.. |+.
T Consensus 492 ~F~tA~dI~p~~Hv~mqaa~Q~~vd~aISKTvNlP~~at~edv~~~Y~~A~~~G~KGiTvYRdgsr~~qvLs 563 (733)
T PRK08665 492 VFVTAHDISPEWHVRMQAAFQKYTDNAVSKTVNFPNEATIEDVEKVYRLAYELGCKGVTIYRDGSRDEQVLS 563 (733)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 742134699999999999999875030210206988889999999999999829978999618984552111
No 18
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; InterPro: IPR013344 This entry represents a group of adenosylcobalamin (AdoCbl or coenzymeB12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterised species from Pyrococcus , Thermoplasma , Corynebacterium and Deinococcus . RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-haem iron-dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.; GO: 0000166 nucleotide binding, 0004748 ribonucleoside-diphosphate reductase activity, 0016960 class II ribonucleotide reductase activity, 0031419 cobalamin binding.
Probab=100.00 E-value=0 Score=1326.21 Aligned_cols=608 Identities=32% Similarity=0.561 Sum_probs=531.4
Q ss_pred HHHHHHHHHHCCC-CC----EEECHHHHHH--------HHHHHHHCCCCC--C---------------------------
Q ss_conf 9999997621148-92----7538899999--------999654164545--3---------------------------
Q gi|254780502|r 298 LQILYDRYFLHIN-GS----RIEMPQAFFM--------RVAMGLALKETE--K--------------------------- 335 (954)
Q Consensus 298 l~tL~~rYllk~~-~~----~~E~pQ~~~m--------rVA~~la~~e~~--~--------------------------- 335 (954)
.+.|..||+++.. +. ++|+|.++|- |||.++|..|.. +
T Consensus 2 ~~~L~~Ry~~~d~~g~~~~~~~~~~~~~~~~~~lRFy~RvA~~~a~~e~~~~~~~~~~~~~~e~~~~~~l~~g~~~~~~~ 81 (792)
T TIGR02504 2 VKVLAARYLLKDEDGRKEYGIIESPEDLFRGYALRFYDRVARALAAAEAKYESPVYESKYHFESLVRYELAEGKMKVSFE 81 (792)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEECCCCCEEEEEE
T ss_conf 12477775320247653567433868883223322347899998766531476666677751243200010272689998
Q ss_pred ------------HHHHHHHHHHHHHCCCCCCCCHHHH--HHCCCCCCCCCCCCCCCCCHHH--------HHHHHHHHHHH
Q ss_conf ------------6899999999974330358611222--1002222321102547664135--------89999899999
Q gi|254780502|r 336 ------------EKRAVEFYNLLSSFHFMCSTPTLFN--SGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAML 393 (954)
Q Consensus 336 ------------~~~~~~~Y~~ls~~~~~~atPtl~N--agt~~~qlsSCfl~~v~Dsl~~--------I~~~~~~~a~i 393 (954)
..+..+||++|+++.|+|+||||+| +||.++|||+|||++|.|||++ ||+++++.|+|
T Consensus 82 ~l~i~~~~~~~~~~~~~~~~~~~~~~~f~p~~p~l~n~~~~~~~~qlsaCFV~pv~D~~~~~~~d~~~~I~~~~~~~a~i 161 (792)
T TIGR02504 82 FLLIEEWFNTGLNPLAERFYDLMVNLDFVPNSPTLMNSAAGTRLGQLSACFVLPVEDSMESETADSRGGIFDALKEAALI 161 (792)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 76304433565145789999998736503578633475677655527877863353575788898678999999999998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCCHHHHHHHCCCCCCH
Q ss_conf 8510544410124431112000127876428899999989999974046-667724789835678899997302578730
Q gi|254780502|r 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 (954)
Q Consensus 394 sk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG-~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~ 472 (954)
+|.|||+|+|||.|||+|+.|+||+|+||||||||++||.++.+|+||| +||||+|+.|++|||||++||++|+..|+-
T Consensus 162 ~k~GGG~G~~FS~LRP~G~~v~gt~G~aSGPvSFm~~fD~~~~~vkqGG~~RRGA~Mg~L~v~HPDI~~FI~aK~~~~~~ 241 (792)
T TIGR02504 162 FKRGGGVGYNFSRLRPKGDIVRGTGGVASGPVSFMRVFDSATEVVKQGGTKRRGAQMGILDVWHPDIEEFIEAKKKEGKK 241 (792)
T ss_pred HHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCHHHHHHHCCCCHHH
T ss_conf 73178321004411558866126775005521398998756313331787233041014630752158899831112789
Q ss_pred H------------------------------------HHHHCCCHHHCCCHHHHHHHHC-------------CCCEEEEE
Q ss_conf 2------------------------------------3320232020348799998521-------------28747871
Q gi|254780502|r 473 R------------------------------------RRTHDMNTANWIPDLFMKRVTQ-------------NAGWTLFS 503 (954)
Q Consensus 473 ~------------------------------------~r~~~~~~av~i~D~Fm~~v~~-------------~~~w~Lf~ 503 (954)
. -...|+|+||.|+|.||++|++ |.+|.|..
T Consensus 242 ~~~L~~~~~~~yi~~Al~~~~~~~E~d~~~~~~~~~~~~l~nFN~SV~v~D~FM~Av~~~~~wl~~p~~~~~~~~y~l~~ 321 (792)
T TIGR02504 242 ARALLKLGAVYYIEVALEEKLLDEEYDVEFEGEAYEDAVLQNFNISVGVTDAFMEAVEADDLWLVEPIEVLKDKEYKLRN 321 (792)
T ss_pred HHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99998708831422334555531012447663020255213662145026899999970588878873116885055415
Q ss_pred CCCCCCCCCCCCCCHHHHHH-----------HHH-HHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCC
Q ss_conf 01144410013443789987-----------787-521048860577866889999999999882881278331120222
Q gi|254780502|r 504 PDEVSDLHDLYGKEFEIAYE-----------NYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 (954)
Q Consensus 504 P~~~~~L~d~~g~~fe~~Y~-----------~~e-~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~ 571 (954)
|.+-........+++...+. ..+ ......+.+++++|+||+||++|+++||++|+||++|.|++||+|
T Consensus 322 P~~~~~~~~~~~~~~~~~~~~~wh~LE~~~~d~~~~~~~~~~~~~~~~v~Ar~Lw~~I~~~AW~~aePGl~F~D~iNr~~ 401 (792)
T TIGR02504 322 PRTGEETEEIDEEDGMDVEKREWHVLEKIVGDLEERDDGGVKPKVYKEVPARELWDKIVEAAWKSAEPGLLFIDTINRWN 401 (792)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCEEHHHHCCCC
T ss_conf 76402333331001210004788153456787799855877423323453799999999873420898604031111317
Q ss_pred CCC---------CCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 124---------6670340467520013665443321112554068625434-------479888558999999997653
Q gi|254780502|r 572 PQQ---------HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-------QFDYDKLASTIRTAVRVLDNV 635 (954)
Q Consensus 572 p~~---------~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-------~~D~~~l~~~v~~avr~LDnV 635 (954)
|+. ..|.|.||||||||+|+++++ ||||||||++||+++ .|||++|+++|+++|||||||
T Consensus 402 ~~~~~~~~~~~~~~~~i~aTNPCGE~pL~pyes----CNLGSINL~~fv~~~~~g~~~~~fD~~~l~~~v~~~~R~LDnv 477 (792)
T TIGR02504 402 PCPVEEALNNLAYLGRINATNPCGEQPLLPYES----CNLGSINLAKFVKNDFDGGDEAEFDWERLREVVRLATRFLDNV 477 (792)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC----CCCHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHH
T ss_conf 889888765432446456425764557888875----3247789999983789988652150889999999999998768
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 11210001888886443310002111188999972963233788999999999985779997898753117788766781
Q gi|254780502|r 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 (954)
Q Consensus 636 Id~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~ 715 (954)
||+|.||+|++++.++..|+||||||||||+|++|||||||+||++|+.+||+.|+.+|+++|.+||+|||+||.|++|.
T Consensus 478 ID~n~~P~p~i~~~~~~~Rr~GLG~MGLAd~L~~lG~PYdS~Ea~~~~~~~~~~i~~~A~~~S~~LA~ErG~FP~~~~~~ 557 (792)
T TIGR02504 478 IDLNKFPLPEIEEATKKTRRIGLGIMGLADLLIKLGIPYDSEEARELAEEIMEFIRDAAYRASAELAKERGPFPLYEASR 557 (792)
T ss_pred HHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCH
T ss_conf 85303787479999852487043400478999981898687899999999999999989999999986508812343031
Q ss_pred HHCCCCCHHHHHCCH---------HHCCCCCCCCHHH---CCHHHHHH--------HHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 213876244663005---------5225334540210---27289999--------999841204430110774368778
Q gi|254780502|r 716 WDQGVFPIDSIGLLA---------EVRDELAMNRTSR---LPWDELKK--------RVKTIGMRNSNCMAIAPTATIANI 775 (954)
Q Consensus 716 ~~~G~~~~d~~~~~~---------~~~~~~~~~~~~~---~dW~~Lr~--------~i~~~G~RNs~l~aiAPT~t~S~i 775 (954)
+..+........... .....-......+ ..|+...+ ...+||+||+++|+||||||||+|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~LeE~~R~E~~~~~k~G~RN~~~ttiAPTGTiS~~ 637 (792)
T TIGR02504 558 YPMAKVLRNRFEAADVRMGERIKPSDLPKELQEAIARLLGEAWDEALEEALRLEREKGEKYGIRNATLTTIAPTGTISLI 637 (792)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHC
T ss_conf 14458888768864421443124120047899998620102589999999999899731789872267654685313211
Q ss_pred HC--CCCCCCCCCHHEEEEECCCC-------CEEEECHHHHHHHHHCCCCC--HHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 38--89884756012034532676-------13664658999899858986--899999985199627764488678865
Q gi|254780502|r 776 CG--VSQSIDPSYQNLYVKSNMSG-------DFTVVNSFLVNELKQRDLWD--EAMISDLKYHDGSIGNIERIPDDLKKI 844 (954)
Q Consensus 776 ~g--~s~gIEP~~a~~y~r~~~~G-------~~~~vn~~l~~~l~~~g~~~--~~~~~~i~~~~Gsv~~i~~ip~~~k~~ 844 (954)
+| ||+||||.|+++|.|++..| .+.++|+.+.+.|+++|+++ .+.+.++...++ |+++|.+|++++++
T Consensus 638 a~NCtSsGiEP~Fa~~y~R~v~~g~~~~~G~~~~~~~~~~~~~lr~~~~~~~~~e~~~~~~~~~~-~~g~~~~p~~~~~~ 716 (792)
T TIGR02504 638 AGNCTSSGIEPVFALVYTRNVAVGGRLKKGDELLEVNPLVEEALRELGYYSKQDELIKEVAETGG-VEGLPEVPEELPKV 716 (792)
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCEECCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHH
T ss_conf 37688877665531014655302733047651021025589885305782000799999997078-88861216878865
Q ss_pred CCCHHCCC------HHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 05222068------8999999985206300523204754-899989999999999972986797965884111
Q gi|254780502|r 845 HATAFEID------PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 (954)
Q Consensus 845 f~ta~ei~------~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~ 910 (954)
|+||+||+ |+|||+|||+.|+|||+|||||||| .++|++||.++|++||++||||||+||++|+++
T Consensus 717 F~tA~d~~G~R~I~p~~H~~mQaa~Q~~vD~~ISKTiN~P~~At~EDv~~~Y~~Aw~~G~KGiTVYRDgSr~~ 789 (792)
T TIGR02504 717 FVTAHDISGKRSISPEDHVRMQAAIQRWVDSAISKTINLPSDATVEDVEAAYLEAWKLGLKGITVYRDGSRSS 789 (792)
T ss_pred CCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 5410015860123989999999997222156640225477788888999999999966995799977687677
No 19
>PRK06948 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=1306.16 Aligned_cols=565 Identities=23% Similarity=0.329 Sum_probs=501.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC-CCCC
Q ss_conf 28989999999976211489275388999999996541645--45368999999999743303586112221002-2223
Q gi|254780502|r 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQL 368 (954)
Q Consensus 292 ~F~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e--~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~-~~ql 368 (954)
.-+=++...|.+|||++.+ ++||+||||||++||..| .++..|+.+||++|++ .|+|+||||+||||. .+||
T Consensus 12 ~~~~~~~~vl~~rYl~~~E----~~p~~~~~RvA~~la~~E~~~~r~~~~~~fy~~l~~-~~~~a~p~l~naG~~~~~~l 86 (602)
T PRK06948 12 DEQPLCDAVFADRYALPGE----TSRAQVFARVAHALALAEPMATRAGAARRFYRNLLN-GAIGAGRIMANAGAAPDQTM 86 (602)
T ss_pred CCCHHHHHHHHHHCCCCCC----CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCC
T ss_conf 9886999999985688999----999999999999997527841479999999999852-97678820316798999872
Q ss_pred CCCCCCCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 2110254766413------5899998999998510544410124431112000127876428899999989999974046
Q gi|254780502|r 369 SSCFLTTVPDDLY------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 (954)
Q Consensus 369 sSCfl~~v~Dsl~------~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG 442 (954)
|||||++|+||.+ +|+++++++++++|+|||||++||+|||+|++|+|++|+|||||||||+||+++.+|+|||
T Consensus 87 ssCFv~~v~~~~~~~~~~~~i~~~~~~aa~~~k~GGGvG~~~s~lRp~Gs~i~~~~g~ssG~v~fmk~~d~~~~~v~QgG 166 (602)
T PRK06948 87 VNCFVHPIRAPAALTAFHPNLDEALDEARLTLAMGGGIGYDFSAIPPADARPDADHPDSPGVCAALDRFDRICTALGERD 166 (602)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 36798165785422330467999999999987438768840434266898755888706875569999999999987289
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 66772478983567889999730257873023320232020348799998521287478710114441001344378998
Q gi|254780502|r 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 (954)
Q Consensus 443 ~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y 522 (954)
+||||+|+||++|||||++||++|++. .|.+++|+||||||+||++|++|++|+||+|.+..+.........
T Consensus 167 ~RrGA~~~~L~v~HpDI~eFi~~K~~~----~r~~~~nisV~i~D~FMe~v~~d~~w~L~~p~~~~~~~~~~~~~~---- 238 (602)
T PRK06948 167 GRRGAQMAVLRCDHPDLAAFVAAKRGR----ARWTTFNLSVAVTDAFMQAVEQDLPWALRHRAPPRRAPGGALPGA---- 238 (602)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHCCC----CHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC----
T ss_conf 864305899926886799999864354----235435831055999999998299846336776223577633356----
Q ss_pred HHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCH
Q ss_conf 77875210488605778668899999999998828812783311202221246670340467520013665443321112
Q gi|254780502|r 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 (954)
Q Consensus 523 ~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL 602 (954)
.....+++|+||+||++|++++||||+||++|+|++|+.||++|.|+|++||||+||+|+++++ |||
T Consensus 239 ---------d~~~~~~~v~Ar~Lw~~I~~~~~etGePgi~F~D~iN~~np~~~~g~I~~SNpC~E~~l~~~~~----CnL 305 (602)
T PRK06948 239 ---------DGAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPCGEQPLPPYGS----CVL 305 (602)
T ss_pred ---------CCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC----EEE
T ss_conf ---------6645788767999999999999987684877757776558754688355437877743698874----344
Q ss_pred HHHHHHHHCCC-------CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf 55406862543-------44798885589999999976531121000188888644331000211118899997296323
Q gi|254780502|r 603 GSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 (954)
Q Consensus 603 ~SiNL~~~v~~-------~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~ 675 (954)
|||||.+|++. ..|||++|+++|+++|||||||||+|.||+++++++|+++|+||||+|||||+|+++||||+
T Consensus 306 gSiNL~~~v~~~~~~~~~~~~D~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~~~~~R~iGLGvmGlad~L~~~gi~Y~ 385 (602)
T PRK06948 306 GPIDLSRFVRHPFGVGGEPRFDFAAFDTAVRIQVRMLDNALDVTRWPLAAHAREAYQKRRIGVGVTGLADALTMMRLRYD 385 (602)
T ss_pred CCEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 11538887105346787433569999999999999988764145475499999986354677026439999998699808
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHH
Q ss_conf 37889999999999857799978987531177887667812138762446630055225334540210272899999998
Q gi|254780502|r 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 (954)
Q Consensus 676 S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~ 755 (954)
|+||++|+++||++|+|+|++||++||+|||+||.|++|+|.+|... ....|.+|+++|++
T Consensus 386 S~eA~~~~~~i~~~i~~~a~~aS~eLAkErG~fp~fe~~~~~~~~~~-------------------~~~lp~~l~e~i~k 446 (602)
T PRK06948 386 SPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPHAHLDALRA-------------------GPPLPHAVCHAIAR 446 (602)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------------------CCCCHHHHHHHHHH
T ss_conf 99999999999999999999999999998699976684200033200-------------------22260999999987
Q ss_pred HHHHHHHHCCCCCCHHHHHHHC--CCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHH-HHHCCCCCC
Q ss_conf 4120443011077436877838--8988475601203453267613664658999899858986899999-985199627
Q gi|254780502|r 756 IGMRNSNCMAIAPTATIANICG--VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD-LKYHDGSIG 832 (954)
Q Consensus 756 ~G~RNs~l~aiAPT~t~S~i~g--~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~-i~~~~Gsv~ 832 (954)
||+|||++||||||||||+|+| ||+||||+|+++|.|.+..|++... ++.+ +..... .....|
T Consensus 447 ~GlRNs~l~aIAPTgSiSii~g~n~SsgIEP~fa~~y~R~~~~~~~~~~-~~~~----------e~~~~~~~~~~~g--- 512 (602)
T PRK06948 447 HGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGAP-GMRA----------ENHAYRLFRSLHG--- 512 (602)
T ss_pred HCCCHHCEEEECCCCCHHHHHCCCCCCCEEECCCCEEEEEEECCCCCCC-CEEE----------HHHHHHHHHHCCC---
T ss_conf 3831110241067761766634788886412421126886303666655-3210----------2679999986058---
Q ss_pred CCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf 764488678865052220688999999985206300523204754-8999899999999999729867979658841111
Q gi|254780502|r 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 (954)
Q Consensus 833 ~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~~ 911 (954)
..+.++++|+||+||+|.|||+|||++|||||||||+|||+ +++|.++|.++|++||++||||+||||++|++.+
T Consensus 513 ----~~~~lp~~f~TA~eI~~~~~v~m~A~~Q~~IDqaiSktinlp~~~t~~dv~~~y~~Awk~GlKgi~yyR~~~~~~~ 588 (602)
T PRK06948 513 ----ERAALPDYFVTAADVAPGDHLAMRAALQPYVDAGISKTVTLPNHYSLAEVNALLFAAWRAKLKGITIFRPDPARDA 588 (602)
T ss_pred ----CHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCE
T ss_conf ----8023122511082289999999999866533087638433089989999999999999959988999888886641
Q ss_pred HHHCCCCC
Q ss_conf 21012444
Q gi|254780502|r 912 EKSTLKGV 919 (954)
Q Consensus 912 ek~t~~~~ 919 (954)
..++-+..
T Consensus 589 vl~~~~~~ 596 (602)
T PRK06948 589 VPSDDDGV 596 (602)
T ss_pred EECCCCCC
T ss_conf 74368876
No 20
>pfam02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain.
Probab=100.00 E-value=0 Score=1290.62 Aligned_cols=515 Identities=47% Similarity=0.816 Sum_probs=498.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32110254766413589999899999851054441012443111200012787642889999998999997404666772
Q gi|254780502|r 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 (954)
Q Consensus 368 lsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA 447 (954)
||||||++++||++||+++++++|+++|.|||||++||+|||+|++|+|++|+|||||||||+||+++.+|+|||+||||
T Consensus 1 lssCfv~~v~Ds~~~I~~~~~~~a~~~k~ggGiG~~~s~lR~~G~~I~~~~g~ssG~v~f~k~~d~~~~~i~qgG~RrGA 80 (516)
T pfam02867 1 LSSCFLLSVDDSLDSIYDTLKEAALLSKSGGGIGINLSKIRAKGSPIRGTGGVSSGVVPFLKVFDDTARYVNQGGKRRGA 80 (516)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 97020588898989999999999999744785888613557899944898980797888999999997741358911460
Q ss_pred EEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 47898356788999973025787302332023202034879999852128747871011444100134437899877875
Q gi|254780502|r 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 (954)
Q Consensus 448 ~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~ 527 (954)
+|+||++|||||++||++|+++|++.+|++|+|+||||||+||+||++|++|+||+|++++.|++.||++|+++|.
T Consensus 81 ~~~~l~~~HpDi~~Fi~~K~~~g~~~~r~~n~n~sv~i~d~Fm~~v~~d~~w~L~~P~~~~~l~~~yg~~f~~~Y~---- 156 (516)
T pfam02867 81 VAVYLEVWHPDIEEFLDLKKNNGDEEVRARNLNLGVWVPDLFMKRVENDGDWTLFSPREAPGLEDLYGEEFEEEYE---- 156 (516)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHHHHC----
T ss_conf 5999789851499999960546864211220553204299999998759928994476674156662433777745----
Q ss_pred HHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 21048860577866889999999999882881278331120222124667034046752001366544332111255406
Q gi|254780502|r 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 (954)
Q Consensus 528 ~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL 607 (954)
.+.+|+|+|++||++|++++|+||+||++|+|++|++||++|.|+|++||||+||+||++++++++||||||||
T Consensus 157 ------~~~~~~v~A~el~~~i~~~~~~tG~P~i~f~D~~N~~n~~~~~g~I~~sN~C~Ei~l~~~~~~~~~CnL~SinL 230 (516)
T pfam02867 157 ------KIVKKTVKARELWFKIVESAWETGEPYILFKDAVNRHNPNKHLGTIKSSNLCTEIVQPTSPGEDAVCNLGSINL 230 (516)
T ss_pred ------CEEEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCCCEEEHHHHHH
T ss_conf ------52357862999999999999997896079613222455333567044357663023037788873210125558
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 86254344798885589999999976531121000188888644331000211118899997296323378899999999
Q gi|254780502|r 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 (954)
Q Consensus 608 ~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~ 687 (954)
++|+.++.|||++|+++|+++|||||||||+|.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++||
T Consensus 231 ~~~~~~~~~D~~~l~~~v~~~vr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~ 310 (516)
T pfam02867 231 AKFVKDGTFDFEELREVVRLAVRALDNVIDLNDYPVPEARKSNKRHRSIGLGVMGLADALAKLGIPYDSEEARELADEIF 310 (516)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 88734777899999999999999999999866866899999999740217764039999998398748999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99857799978987531177887667812138762446630055225334540210272899999998412044301107
Q gi|254780502|r 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 (954)
Q Consensus 688 e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiA 767 (954)
|+|+|+|+++|++||+|||+||.|++|+|++|++|+|.+...... ......++|+.||++|++||+|||++||||
T Consensus 311 e~i~~~a~~aS~elAkE~G~fp~f~~s~~~~g~~~~d~~~~~~~~-----~~~~~~~~W~~Lr~~i~~~G~RNs~l~aiA 385 (516)
T pfam02867 311 ETIYYYALKASNELAKEKGPFPGFEGSKYAKGILPFDLAKTVDDL-----GPKTTKEDWEELREDIKKHGLRNSQLTAIA 385 (516)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999999999999999974999887889554165365443101222-----452024509999999865163202576405
Q ss_pred CCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 74368778388988475601203453267613664658999899858986899999985199627764488678865052
Q gi|254780502|r 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 (954)
Q Consensus 768 PT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~t 847 (954)
||||||+|+|||+||||+|+++|+|++.+|+|.++||+|+++|+++|+|++++. ||+|+++.+|++++++|+|
T Consensus 386 PTgTiS~i~g~S~gIEP~fa~~y~R~~~~g~~~~~n~~l~~~l~~~~~~~~~~~-------gsv~~~~~~~~~~~~~f~t 458 (516)
T pfam02867 386 PTGSISQIAGTTEGIEPIFSNVYSRRVKSGEFLVVNPYLSRDLRELGLWTLEMK-------GSVQGIPEIPAELKAYYKT 458 (516)
T ss_pred CCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHC-------CCHHCCCCCCHHHHHHCCC
T ss_conf 751033315887632503110378971577179987789999998088708651-------6320478887668754750
Q ss_pred HHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 220688999999985206300523204754-899989999999999972986797965
Q gi|254780502|r 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 (954)
Q Consensus 848 a~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R 904 (954)
|+||+|+|||+|||++|||||||||+|+|+ +++|.++|.++|++||++||||++|||
T Consensus 459 A~di~~~~~i~~~A~~Q~~iDqsiS~tin~p~~~t~~~v~~~y~~Awk~GlK~~tyYR 516 (516)
T pfam02867 459 AFDIDQKGHIDMAAARQPFVDQSISKTLFLPEPATASDLKSLYLYAWKLGLKTGTYYR 516 (516)
T ss_pred HHHCCHHHHHHHHHHHCCCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8519999999999986675415424834149998999999999999996898436629
No 21
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1253.96 Aligned_cols=472 Identities=28% Similarity=0.517 Sum_probs=437.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCC-CCHHHHHH
Q ss_conf 44410124431112000127876428899999989999974046667724789835678899997302578-73023320
Q gi|254780502|r 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTH 477 (954)
Q Consensus 399 GiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~-G~~~~r~~ 477 (954)
-+|++||+|||+|+.|+||+|+|||||||||+||.++.+|+|||+||||+|+.|++|||||++||.+|..+ |+... .
T Consensus 755 nTGfsFSrLRPkGd~V~STgGvASGPVSFMRvfDAatetIKQGGtRRGAnMGILrVDHPDIeEFI~AKeke~g~~~L--s 832 (1748)
T PRK08332 755 NTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEIWHPDIEKFIHAKEKNIGTNVL--S 832 (1748)
T ss_pred CCCCCEECCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCC--C
T ss_conf 48853021067898604778733675357878776353776357703430588846998799999861115675602--2
Q ss_pred CCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHC
Q ss_conf 23202034879999852128747871011444100134437899877875210488605778668899999999998828
Q gi|254780502|r 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 (954)
Q Consensus 478 ~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG 557 (954)
|+|.||.|+|.||++|++|++|.|.+|.+ +++.++|+|++||++|++.+|++|
T Consensus 833 NFNISV~VTDeFMeAVe~d~ey~LinPrT---------------------------GeVv~~V~ArELF~~Ia~~AW~~g 885 (1748)
T PRK08332 833 NFNISVGIWEDFWEALKEGKKYPLINPRT---------------------------GEKVKEIDPKSLFEELAYMAWAKA 885 (1748)
T ss_pred CCEEEEEECHHHHHHHHCCCCCCCCCCCC---------------------------CCEEEEECHHHHHHHHHHHHHHCC
T ss_conf 31455650699999986499776525788---------------------------855678778999999999998618
Q ss_pred CCEEEEECHHHCCCCCCCC--CEEEECCCCC----------------CCC------------------------------
Q ss_conf 8127833112022212466--7034046752----------------001------------------------------
Q gi|254780502|r 558 HPWITFKDPCNIRSPQQHV--GVVHSSNLCT----------------EIT------------------------------ 589 (954)
Q Consensus 558 ~P~i~f~D~~N~~~p~~~~--g~I~~sNlC~----------------Ei~------------------------------ 589 (954)
+||++|.|++|++||.+.. |.|.+||||- |+.
T Consensus 886 DPGVIF~DrINr~N~l~~a~ggrIeATNPCVTGDT~VlT~eG~iqvrEL~~lakErG~~~~~~v~Gi~~eg~p~~~~~e~ 965 (1748)
T PRK08332 886 DPGVIFFDVINRRNVLEKAKGEKIRATNPCVVGDTRILTPEGYIKAEEIFSLAKERGKKEAVAVEGIAEEGEPYAYSVEI 965 (1748)
T ss_pred CCCEEEEECCHHCCCCCCCCCCEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 99768741101027998667872444699885762685377625299999876532652134313522467764432312
Q ss_pred -CC-----------------------------CCC----------C----------------------------------
Q ss_conf -36-----------------------------654----------4----------------------------------
Q gi|254780502|r 590 -LN-----------------------------SSS----------E---------------------------------- 595 (954)
Q Consensus 590 -l~-----------------------------~~~----------~---------------------------------- 595 (954)
+| +.. +
T Consensus 966 llpgee~~~~~t~~g~~~~~~d~~~vpa~~fkTG~KpVyrLrTrEGyEIRlTaDHrVmt~~GWv~A~dLKpGDkIvL~~~ 1045 (1748)
T PRK08332 966 LLPGEEEVEYETVHGKALAIADPVAVPAYVWKVGKKKVARVKTKEGYEITATLDHKLMTPEGWKEVGELKEGDEILLPRF 1045 (1748)
T ss_pred CCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEECCCCCEEHHHCCCCCEEEECCC
T ss_conf 36631111010003543223665556410001465358999943854898569962652135378613899998984665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780502|r 596 -------------------------------------------------------------------------------- 595 (954)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (954)
T Consensus 1046 ~~e~~fGse~~~Ee~aylLGwLVGDG~L~v~dk~a~~~f~~e~e~~~A~~~~~il~~~~g~r~~phR~~~~i~l~vRge~ 1125 (1748)
T PRK08332 1046 EIEEDFGSESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEDIAVKIRDILAKHFGIKAELHRYGNQIKLGVRGEA 1125 (1748)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
T ss_conf 55544453323432213578883254000277336886064101123477889999863101465334645663003699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780502|r 596 -------------------------------------------------------------------------------- 595 (954)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (954)
T Consensus 1126 ~R~l~si~~~~eKrVPE~I~r~sse~~raFLRGLFDADGtV~KGvSIRLaSSsl~LLr~VQrLLLrFGI~SkIYerR~~~ 1205 (1748)
T PRK08332 1126 YRWLENIMGNNEKRIPEIIYRLKPREIAAFLRGLFSADGYVDKDMAIRLTSKDRELLRDVQDLLLLFGILSKIYEKPYES 1205 (1748)
T ss_pred HHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99999743764355887887058899999985440477732378358722278899999999998638602442155555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780502|r 596 -------------------------------------------------------------------------------- 595 (954)
Q Consensus 596 -------------------------------------------------------------------------------- 595 (954)
T Consensus 1206 ~f~~~~k~Gg~R~Y~~ka~hELVIS~en~~rFAE~IGF~~~K~akLs~rK~~~er~~atVeSvE~~G~E~VYDltVPg~H 1285 (1748)
T PRK08332 1206 EFHYTTKDGEERIYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLKKTKIDEPIVTVESVEVLGEEIVYDFTVPEHH 1285 (1748)
T ss_pred CCCCCCCCCCEEECCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCC
T ss_conf 52225999975651466625899727308999998186377788876554035665136788874475025641256543
Q ss_pred ------------------CCCCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf ------------------3321112554068625434-----47988855899999999765311210001888886443
Q gi|254780502|r 596 ------------------ETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 (954)
Q Consensus 596 ------------------e~~vCnL~SiNL~~~v~~~-----~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~ 652 (954)
.+.+||||||||++||+.+ .|||++|+++|+.+|||||||||.|.||+|++...++.
T Consensus 1286 aFiANGiVVHNCGEqPL~pyEsCNLGSINLa~fVk~de~G~~~fDwe~l~~~Vr~avRFLDNVIDvN~yPLp~I~e~tk~ 1365 (1748)
T PRK08332 1286 MYISNGFMSHNCGEEPLYEYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDRNTKL 1365 (1748)
T ss_pred EEEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 37645658834767777887644433013887723444677434689999999999888886410024883578899865
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHH
Q ss_conf 31000211118899997296323378899999999998577999789875311778876678121387624466300552
Q gi|254780502|r 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 (954)
Q Consensus 653 ~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~ 732 (954)
.|+||||+|||||+|++|||||+|+||++|++++|++|+++|+++|.+||+|||+||.|+.|.|.+|.+|.+.
T Consensus 1366 tRKIGLGvMGlADlLikLGIPYnSeEg~~fa~kvM~fI~~~A~~aS~eLAkERG~FPlfe~S~Y~~g~~PveG------- 1438 (1748)
T PRK08332 1366 TRRIGVGMMGLADALFKLGIPYNSEEGFDFMRKATEYLTFYAYKRSVEAAKERGPFPLYDKTEYKDGELPVEG------- 1438 (1748)
T ss_pred HCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCC-------
T ss_conf 0302400556999999738987868999999999999999999999999980699998402205566677566-------
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf 25334540210272899999998412044301107743687783889884756012034532676136646589998998
Q gi|254780502|r 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 (954)
Q Consensus 733 ~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~ 812 (954)
++.+..+..+|+.|.+.++++|+||+++|+||||||||+|+|||+||||.|+++|+|.+..|+|.+|||+|.+.|++
T Consensus 1439 ---~y~~e~~~~~wd~l~~ei~~~gvRNAtvTTIAPTGTISmIAdtSSGIEPiFALay~R~Vt~Gel~~VNp~fe~~Lk~ 1515 (1748)
T PRK08332 1439 ---FYHPEIWNLPWDELVEEIKKYGLRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKK 1515 (1748)
T ss_pred ---CCCHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEEEECCCCEEEECHHHHHHHHH
T ss_conf ---65422214546889998740354420145567876357750677786743466789984057169975899999987
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHH
Q ss_conf 58986899999985199627764488678865052220688999999985206300523204754-89998999999999
Q gi|254780502|r 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 (954)
Q Consensus 813 ~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~ 891 (954)
+|+|++++...+....||+++++.+|++++.+|+||+||+|.|||+|||++|+|+|+|+|||+|| +++|.+||.++|++
T Consensus 1516 ~GlyseELm~kIae~~GSv~Gl~evPEeikrVFVTAmDIsP~dHl~MQAAfQkyvDnAISKTINmPndATvEDVk~vYll 1595 (1748)
T PRK08332 1516 RGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHIIAQANIQLWLTDSASKTINMINDATVEDVKAAYLI 1595 (1748)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 38885999999997468747844489887855577225897899999999988732655233059987899999999999
Q ss_pred HHHCCCCEEEEECCCCCH
Q ss_conf 997298679796588411
Q gi|254780502|r 892 AWLMGLKTTYYLRSRSAT 909 (954)
Q Consensus 892 Aw~~GlKt~yy~R~~s~~ 909 (954)
||++||||+++||++|.+
T Consensus 1596 Ay~LGcKGVTVYRDGSrs 1613 (1748)
T PRK08332 1596 ARFLGCKGVTVYRDGSLS 1613 (1748)
T ss_pred HHHCCCCEEEEEECCCCC
T ss_conf 998299579996158752
No 22
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=0 Score=1198.21 Aligned_cols=454 Identities=54% Similarity=0.866 Sum_probs=441.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999999965416454536899999999974330358611222100222232110254766413589999899999851
Q gi|254780502|r 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 (954)
Q Consensus 317 pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ 396 (954)
||+||||||++++. ++++|+++||++||+++|+|+||||+||||+++|||||||+.++|||+|||++++++|+++|+
T Consensus 1 pq~~~~rvA~~~~~---~~~~~a~~fy~~ls~~~~~~atP~l~naGt~~~~lssCfl~~v~Dsl~~I~~~~~~~a~~~k~ 77 (460)
T cd01679 1 PQDRLMRVALGLAS---GDLEWAKEFYDLLSKQRFTPATPTLFNAGTPRGQLSSCFLLTVDDSLESIYDTIKECAQLSKI 77 (460)
T ss_pred CHHHHHHHHHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 97999999999817---859999999999977885059854425999999843547888898999999999999999860
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHH
Q ss_conf 05444101244311120001278764288999999899999740466677247898356788999973025787302332
Q gi|254780502|r 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 (954)
Q Consensus 397 ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~ 476 (954)
|||||++||+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+||++|||||++||++|+|+|+|++|+
T Consensus 78 gGGvG~~~s~iR~~Gs~I~~~~g~ssG~v~fmk~~d~~~~~i~Qgg~RrGA~~~~l~~~HpDI~~Fi~~K~~~g~e~~r~ 157 (460)
T cd01679 78 GGGIGLNLSNIRATGSPIRGTNGASNGVIPFLKLLNDTARYVDQGGQRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRA 157 (460)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 79365304556789987799998289841299999999998761793030047871058614999997414578555544
Q ss_pred HCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 02320203487999985212874787101144410013443789987787521048860577866889999999999882
Q gi|254780502|r 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 (954)
Q Consensus 477 ~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~et 556 (954)
+|+|+||||||+||++|+ ||||++|++++|+|
T Consensus 158 ~~~~~sv~i~D~Fm~~v~------------------------------------------------r~L~~~i~~~~~~t 189 (460)
T cd01679 158 RDLFYGVWIPDLFMERVE------------------------------------------------RDLWRKILESQFET 189 (460)
T ss_pred HHCEECCCCCHHHHHHHH------------------------------------------------HHHHHHHHHHHHHH
T ss_conf 416320035999999999------------------------------------------------99999999999986
Q ss_pred CCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88127833112022212466703404675200136654-----4332111255406862543447988855899999999
Q gi|254780502|r 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-----EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 (954)
Q Consensus 557 G~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~-----~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~ 631 (954)
|+||++|+|++|++||++|.|+|++||||+||+||+++ ++++|||||||||.+|+ ||++|+++|+++|||
T Consensus 190 G~P~i~f~D~~N~~~~~~~~g~I~~sNlC~EI~~~~~p~~~~~~~~~~CnL~SiNL~~~v-----~~~~l~~~v~~~vr~ 264 (460)
T cd01679 190 GYPYILFKDTCNRKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFV-----TFEKLEEVVKLAVRA 264 (460)
T ss_pred CCCCEEECCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHC-----CHHHHHHHHHHHHHH
T ss_conf 897057543666469877778566436666500247754466664115532311376400-----177799999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76531121000188888644331000211118899997296323378899999999998577999789875311778876
Q gi|254780502|r 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 (954)
Q Consensus 632 LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f 711 (954)
||||||.|.||+++++++++++|+||||+|||||+|+++|++|+|+||++++++|||.|+|+|++||++||+|||
T Consensus 265 LDnvid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~ErG----- 339 (460)
T cd01679 265 LDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG----- 339 (460)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_conf 875131145761999999997401144310699999983998589999999999999999999999999999967-----
Q ss_pred CCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEE
Q ss_conf 67812138762446630055225334540210272899999998412044301107743687783889884756012034
Q gi|254780502|r 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 (954)
Q Consensus 712 ~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~ 791 (954)
|+|||+++|||||||||+|+|||+||||+|+++|+
T Consensus 340 ---------------------------------------------G~RNs~l~aiAPTgs~S~i~g~s~gIEP~~a~~~~ 374 (460)
T cd01679 340 ---------------------------------------------GLRNSLLLAIAPTASISQILGATPSIEPITSNIYV 374 (460)
T ss_pred ---------------------------------------------CCCHHHHHCCCCCCHHHHHHCCCCCCCCCHHHEEE
T ss_conf ---------------------------------------------74005464127850156860788744504203378
Q ss_pred EECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCE
Q ss_conf 53267613664658999899858986899999985199627764488678865052220688999999985206300523
Q gi|254780502|r 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 (954)
Q Consensus 792 r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsi 871 (954)
|++++|+|.++||+|.+++++.+ +|+|||||+|++||+|||++||||||||
T Consensus 375 r~~~~g~~~~~np~l~~~~~~~~-----------------------------~~~ta~ei~~~~~i~~~A~~Q~~vDqsi 425 (460)
T cd01679 375 RRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHIDQGQ 425 (460)
T ss_pred EEECCCEEEEECHHHHHHHHHHC-----------------------------CCCCHHHCCHHHHHHHHHHHCCCCCCCC
T ss_conf 97147508997836899987715-----------------------------0146986899999999998667752012
Q ss_pred EEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 204754-8999899999999999729867979658
Q gi|254780502|r 872 SLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 (954)
Q Consensus 872 S~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~ 905 (954)
|+|||+ +++|.++|.++|++|||+||||+||+||
T Consensus 426 S~tl~~~~~~t~~~i~~~y~~Awk~GlKt~YY~rt 460 (460)
T cd01679 426 SLNLFLTPPATTRDLNSLYFYAWKKGLKTLYYLRT 460 (460)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 48520699889999999999999809881430388
No 23
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1187.78 Aligned_cols=560 Identities=26% Similarity=0.392 Sum_probs=494.0
Q ss_pred HHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCCCCCCCHHHHHHCCC-CCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 899999999654164545---3689999999997433035861122210022-2232110254-7664135899998999
Q gi|254780502|r 317 PQAFFMRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTT-VPDDLYGIFGALQENA 391 (954)
Q Consensus 317 pQ~~~mrVA~~la~~e~~---~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~-~qlsSCfl~~-v~Dsl~~I~~~~~~~a 391 (954)
+.+++-|+|.+||..|.. +.+|..+||+.|.+++|+|++++|++|||.+ ..|-+|||++ ++||++|||+.++++|
T Consensus 130 ~e~~~kr~a~~la~ve~~~~~~~~w~e~fy~~l~~~~fiPaGRil~GAGt~~~vT~fNC~Vm~~i~Ds~~gI~~~~ke~~ 209 (857)
T PRK08115 130 YEQIAKRNATGLAAVEKTEEKRKEWFEKFYKELASLNFIPAGRVLYGAGSKKEVTFFNCYVMPFVKDSREGISEHRKQVM 209 (857)
T ss_pred HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999988756311113999999999999999974587754103325788870579843773877765788999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 99851054441012443111200012787642889999998999997404666772478983567889999730257873
Q gi|254780502|r 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 (954)
Q Consensus 392 ~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~ 471 (954)
.+++.|||||+|||.|||+|+.++|++|.||||||||++||.++..|.|||.||||+|+.|.+|||||++||.+|.++..
T Consensus 210 ~~m~~GGGvG~nfStLRPkga~v~gv~g~aSGpvSfm~v~~~~~~~v~qgGsRRGA~M~~L~~dHPDI~eFI~aK~~~~~ 289 (857)
T PRK08115 210 EIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDIVEFIISKMQNPR 289 (857)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCHH
T ss_conf 99852785366777558798833246886777412999999998999861764000455313779629999997413657
Q ss_pred H-----------------------------------------------------------------------HHHHHCCC
Q ss_conf 0-----------------------------------------------------------------------23320232
Q gi|254780502|r 472 D-----------------------------------------------------------------------RRRTHDMN 480 (954)
Q Consensus 472 ~-----------------------------------------------------------------------~~r~~~~~ 480 (954)
- .-+..++|
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~l~f~p~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~y~~~~p~~Lt~~N 369 (857)
T PRK08115 290 ILRYLLENTHDELIKKAVKDKLNFTPLSQEEEAMYQAIVNYKNIPGHGGFDTAVIKEAENKLRAGGTYTVNNPDFLTGAN 369 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 77665412430667776543015675104566655432012345554543123344455432136643345733235642
Q ss_pred HHHCCCHHHHHHHHCCCCEEEEECCC---CCCCCCCCCCCHHHH--HHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 02034879999852128747871011---444100134437899--8778752104886057786688999999999988
Q gi|254780502|r 481 TANWIPDLFMKRVTQNAGWTLFSPDE---VSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 (954)
Q Consensus 481 ~av~i~D~Fm~~v~~~~~w~Lf~P~~---~~~L~d~~g~~fe~~--Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~e 555 (954)
+||+|+|.||++|++|++|.|.+|.. .+.--..|..+|... -.+|++.+ .+.+++|+|+||+||++|+.++|.
T Consensus 370 iSV~vtdeFMeAV~~D~~~~L~fp~~~~~~~~~~~~y~~~W~~~gdv~eW~~~g--~~vkvyrtikAreLW~~I~~~Aty 447 (857)
T PRK08115 370 ISVCLTKEFMEAVENDEMYELRFPDVEKYTKEEMAIYNKEWHNVGDVREWEKMG--YPVKVYRTIKAKELWNLINICATY 447 (857)
T ss_pred EEEEECHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCC--CCCEEEEEEEHHHHHHHHHHHCCC
T ss_conf 589867999999976997154358754432122223210001345520122137--653278886299999999985044
Q ss_pred HCCCEEEEECHHHCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 288127833112022212-466703404675200136654433211125540686254--34479888558999999997
Q gi|254780502|r 556 TGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVL 632 (954)
Q Consensus 556 tG~P~i~f~D~~N~~~p~-~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~--~~~~D~~~l~~~v~~avr~L 632 (954)
+|+||++|+|++|++||. .++..|.+|||||||||||++. ||||||||++||. ++.|||++|+++|+++||||
T Consensus 448 ~AEPGviFiDriN~~nNl~~y~e~I~ATNPCGEQPLpPYgs----CNLGSINLakfV~~~~~~~Dwd~L~~~V~~AVRfL 523 (857)
T PRK08115 448 SAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAPYSV----CNLAAINLANFVDKHTKTIDYEKLKNTVEVGVRMQ 523 (857)
T ss_pred CCCCCEEEHHHHHHHCCHHHHCCEEEECCCCCCCCCCCCCE----EECHHEEHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57996786152131156165276037507887877898661----05634029987076678559999999999999876
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 65311210001888886443310002111188999972963233788999999999985779997898753117788766
Q gi|254780502|r 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 (954)
Q Consensus 633 DnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~ 712 (954)
|||||+|.||+|+++..+++.|+||||||||||+|++||+||+|+||++|+++||++|++.|++||++||+|||+||.|+
T Consensus 524 DNVID~n~yPL~ei~~~ak~~RRIGLGVMGLAD~Li~LGi~YgSeEA~~lae~Vm~~I~~~Ay~aSveLAkErG~FP~fd 603 (857)
T PRK08115 524 DNVIDATPYFLEENKKQALGERRVGLGVMGLHDLLIYCEKKYGSEEGNKLVDEIFETIATTAYRTSIELAKEKGSFPFLV 603 (857)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 73002778962999999984574152312099999983998699999999999999999999999999997008886765
Q ss_pred CCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEE
Q ss_conf 78121387624466300552253345402102728999999984120443011077436877838898847560120345
Q gi|254780502|r 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 (954)
Q Consensus 713 gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r 792 (954)
++.+....+..+. +....+....|+.||+.|++||+|||++|+||||||||+|+|||+||||+|+++|.|
T Consensus 604 as~~~e~~~~re~----------fl~sg~~k~lpedlre~I~k~GiRNa~ltTIAPTGTISliAgvSSGIEPvFA~~Y~R 673 (857)
T PRK08115 604 GVTDEETARLRER----------FIQTGYMKKMPEDIRQAILKTGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYFR 673 (857)
T ss_pred CCCCCCCHHHHHH----------HHCCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 3111232023555----------411334554879999999754965002345078658998855067737676315898
Q ss_pred ECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEE
Q ss_conf 32676136646589998998589868999999851996277644886788650522206889999999852063005232
Q gi|254780502|r 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 (954)
Q Consensus 793 ~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS 872 (954)
++..|+|..++..++++....+.+. + +++++++|+||+||+|.|||+|||+.|+|||+|||
T Consensus 674 ~v~~g~f~ev~~~~v~e~~~~~~~~---------------~----~~~LPe~FVTA~DIsPedHVrMQAA~QkwVDsSIS 734 (857)
T PRK08115 674 SGRLGKFIEVKADIVQEYLDIHPEA---------------D----ENHLPEWFVSAMDLKPEAHADVQCIIQRWIDSSIS 734 (857)
T ss_pred EECCCCCEEECHHHHHHHHHHCCCC---------------C----HHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 3214776020179999999975878---------------9----34575716671759999999999988644034010
Q ss_pred EEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HH
Q ss_conf 04754-89998999999999997298679796588411-11
Q gi|254780502|r 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SV 911 (954)
Q Consensus 873 ~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~-~~ 911 (954)
||+|+ +++|++||.++|++||++||||+|+||++|+. ||
T Consensus 735 KTINlPndATvEDV~~vY~~AY~~GCKGVTVYRDGSR~~QV 775 (857)
T PRK08115 735 KTVNAPKGYTVEQVEKVYERLYRGGAKGGTVYVDGSRDAQV 775 (857)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 43328898899999999999997699779994278776115
No 24
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=1183.21 Aligned_cols=629 Identities=41% Similarity=0.696 Sum_probs=573.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89730378988899999999999987441-87714677999999999986210033310110446777547888998665
Q gi|254780502|r 184 ETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 (954)
Q Consensus 184 ~~~~~lydgitt~el~~~li~aA~~Li~~-ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~ 262 (954)
....+++++++ +...++.++..++.. +|+|.++++|+.++.+++++...+.. ...+ ......++.+
T Consensus 4 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~ 70 (651)
T COG0209 4 RTVIGFYDGIT---IAENLILAALTVIEEDDPDVQRLAARLAGSDLRKEAVRQFGR---------FDVL-DEKVFALVAN 70 (651)
T ss_pred CCCCCCCCCHH---HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCC---------CCCH-HHHHHHHHHH
T ss_conf 01343013327---987654312542365687702443288899999997500355---------3221-0107888750
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC--CEEECHHHHHHHHHHHHHCCCCC--CHHH
Q ss_conf 5767787777517739999976412101128989999999976211489--27538899999999654164545--3689
Q gi|254780502|r 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETE--KEKR 338 (954)
Q Consensus 263 G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~~--~~~E~pQ~~~mrVA~~la~~e~~--~~~~ 338 (954)
+.+...+...++..+++.+...+++.||.+|+|+|.++|++|||++.++ .++|+||.||||||+++|.+|.. +..|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~ 150 (651)
T COG0209 71 GYYDQRLLRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEW 150 (651)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 21137888754444489998765402110010789999987550546666412248789999999985446653035689
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999743303586112221002222321102547664135899998999998510544410124431112000127
Q gi|254780502|r 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 (954)
Q Consensus 339 ~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~ 418 (954)
+.+||++||+++|+|+||||+|+||+++|||||||+++.||.
T Consensus 151 a~~~y~~~~~~~~~patPtl~n~~~~~~qlssCfv~~~~dd~-------------------------------------- 192 (651)
T COG0209 151 AKEFYDLMSSLRFMPATPTLLNGGTPRGQLSSCFVLPVEDDS-------------------------------------- 192 (651)
T ss_pred HHHHHHHHHHCEECCCCCCEECCCCCCCCEEEEEEECCCCCC--------------------------------------
T ss_conf 999999997080527995155688777770046973533788--------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCC
Q ss_conf 87642889999998999997404666772478983567889999730257873023320232020348799998521287
Q gi|254780502|r 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 (954)
Q Consensus 419 G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~ 498 (954)
||+|||||++|+++.+|+|||+||||+|+||++|||||++||++|+++||+++|++++++++|+||+||+++++|++
T Consensus 193 ---sG~i~~~k~~d~~~~~i~QgG~R~GA~~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~ 269 (651)
T COG0209 193 ---SGVVPFMKLLDDAFDAINQGGVRRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGED 269 (651)
T ss_pred ---CCEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHCCCC
T ss_conf ---67103999988887899862877772478730687479999998674446300144574532143889998645997
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCC-CCC
Q ss_conf 4787101144410013443789987787521048860577866889999999999882881278331120222124-667
Q gi|254780502|r 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-HVG 577 (954)
Q Consensus 499 w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~-~~g 577 (954)
|+||+|++..++.+.+|++|++ |.+++.. +....++|+|++||++|++.+|+||+||++|+|++|++||+. +.|
T Consensus 270 ~~l~~P~~~~~~~~~~~~~~~~-y~~~~~~----~~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g 344 (651)
T COG0209 270 WTLFSPRDGYEAPDVYGAEFEE-YAEYEAD----PGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGG 344 (651)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHHHCC----CCCEEECCCHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCC
T ss_conf 1241875322223100356677-8887416----5430101278999999998744038961676311035588745675
Q ss_pred EEEECCCCCCCCCCC-------CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 034046752001366-------5443321112554068625434479888558999999997653112100018888864
Q gi|254780502|r 578 VVHSSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 (954)
Q Consensus 578 ~I~~sNlC~Ei~l~~-------~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~ 650 (954)
+|++||||+||.|++ ...++++||||||||.+++.. . |. |+++|+++||+||||||+|.||+|+++++|
T Consensus 345 ~I~~sNlC~Ei~~~~~~~~~~~~~~~~~~CNL~siNl~~~~~~-~-~~--~~~~v~~~vr~Ld~vid~~~~p~~~~~~~n 420 (651)
T COG0209 345 AIRASNLCSEILQRTKPLSLEQPLGEDASCNLGSINLAKFVKY-G-DG--LAELVAVAVRALDNVIDLNPYPVPEAERAN 420 (651)
T ss_pred EEEECCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHC-C-CC--HHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 3896464065430477631235666605875133008887624-6-23--334101135453666750468766788754
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCH
Q ss_conf 43310002111188999972963233788999999999985779997898753117788766781213876244663005
Q gi|254780502|r 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 (954)
Q Consensus 651 ~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~ 730 (954)
.++|+||||+|||||+|+++||||+|+||+.|++++|+.|+|+|+++|++||+|||+|+.|++|.|++|.+|.+.....
T Consensus 421 ~~~R~iGlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g~~~~~~~~~~- 499 (651)
T COG0209 421 AESRAIGLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRLF- 499 (651)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHC-
T ss_conf 4304401202038899985698758878999999999999999998748988542897431525242287544200110-
Q ss_pred HHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHH
Q ss_conf 52253345402102728999999984120443011077436877838898847560120345326761366465899989
Q gi|254780502|r 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 (954)
Q Consensus 731 ~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l 810 (954)
... ++|+.|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|.+++|.+++++|++.+++
T Consensus 500 ---------~~~-~~w~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~~ 569 (651)
T COG0209 500 ---------GIT-EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFEDL 569 (651)
T ss_pred ---------CCC-CHHHHHHHHHHHHHHHHHCEEEECCCCCEEEEECCCCCCEECHHHEEEEECCCCCEEEECCHHHHHH
T ss_conf ---------132-1189999999874244523167647884688706788620313033787504551388672677889
Q ss_pred HHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHH
Q ss_conf 9858986899999985199627764488678865052220688999999985206300523204754-899989999999
Q gi|254780502|r 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 (954)
Q Consensus 811 ~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y 889 (954)
.. +|..|++|+|.|||+|+|++|+|||||||+|+|+ ++++.+|+..+|
T Consensus 570 ~~-------------------------------~~~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~~ 618 (651)
T COG0209 570 LA-------------------------------YYGLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKAY 618 (651)
T ss_pred HH-------------------------------HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHH
T ss_conf 98-------------------------------63567622843168877764063142312044358998889999999
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHCCC
Q ss_conf 9999729867979658841111210124
Q gi|254780502|r 890 RQAWLMGLKTTYYLRSRSATSVEKSTLK 917 (954)
Q Consensus 890 ~~Aw~~GlKt~yy~R~~s~~~~ek~t~~ 917 (954)
++||++||||+||.|+...++++++..+
T Consensus 619 ~~Aw~~g~K~~yY~~~~~~~~~~~~~~~ 646 (651)
T COG0209 619 LYAWKLGLKTTYYRRTSQAAQVLTVVLD 646 (651)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 9998728771899626211112256766
No 25
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=0 Score=1172.37 Aligned_cols=457 Identities=35% Similarity=0.582 Sum_probs=436.6
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999974330358611222100-222232110254766-41358999989999985105444101244311120001
Q gi|254780502|r 339 AVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPD-DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 (954)
Q Consensus 339 ~~~~Y~~ls~~~~~~atPtl~Nagt-~~~qlsSCfl~~v~D-sl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g 416 (954)
|.+||++|++++|+||||||+|||| +++|||||||++++| |++|||++++++|+++|+|||||+|||+|||+|++|+|
T Consensus 1 a~~fy~~l~~~~f~patP~l~naG~~~~~~lssCfv~~v~dds~~~I~~~~~~~a~~~k~gGGvG~~~s~lR~~G~~I~~ 80 (464)
T cd02888 1 ADEFFYLLLSQGFIPNSPTLMNAGTGELGQLSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKGDIVKS 80 (464)
T ss_pred CHHHHHHHHCCCEECCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf 97899999859876687475269989999613578068799998899999999999985578088623666789982478
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCC
Q ss_conf 27876428899999989999974046667724789835678899997302578730233202320203487999985212
Q gi|254780502|r 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 (954)
Q Consensus 417 ~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~ 496 (954)
++|+|+|||||||+||+++.+|+|||+||||+|+||++|||||++||++|+++|+++ |.+++|++|||||+||++|++|
T Consensus 81 ~~g~ssG~v~fmk~~d~~~~~v~QgG~RrGA~~~~l~~~HpDI~~Fl~~K~~~~~~~-r~~~~n~sv~i~D~Fm~~v~~d 159 (464)
T cd02888 81 TGGVASGPVSFMRVFDAATGVIKQGGTRRGANMGVLDVDHPDIEEFIDAKMKEEKTV-VLQNFNISVAVTDAFMEAVEND 159 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCH-HHHCCCCCEEECHHHHHHHHCC
T ss_conf 899779811099999999999965898786169997788724999998633686213-4432774032289999998769
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCC
Q ss_conf 87478710114441001344378998778752104886057786688999999999988288127833112022212466
Q gi|254780502|r 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 (954)
Q Consensus 497 ~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~ 576 (954)
++|+||+|++.+ ..+++|+|+||+||++|++++|+||+||++|+|++|++||+++.
T Consensus 160 ~~~~L~~p~~~~------------------------~~~~~~~v~Ar~Lw~~I~~~~~etG~P~i~F~D~~N~~n~~~~~ 215 (464)
T cd02888 160 EPWELRNPREPD------------------------TGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGL 215 (464)
T ss_pred CCEEEECCCCCC------------------------CCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
T ss_conf 971786444478------------------------87578897699999999999999678398774576456766554
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 70340467520013665443321112554068625434----47988855899999999765311210001888886443
Q gi|254780502|r 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 (954)
Q Consensus 577 g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~----~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~ 652 (954)
|+|++||||+||+||+++ |||||||||++|+.++ .|||++|+++|+++|||||||||+|.||+|++++++++
T Consensus 216 g~I~~SNlC~Ei~l~~~~----~CnL~SiNL~~~v~~~~~~~~fD~~~l~~~v~~~vr~LDnvid~~~~p~~~~~~~~~~ 291 (464)
T cd02888 216 GRINATNPCGEQPLLPYE----SCNLGSINLSKFVKNPFGGASFDFERLREAVRLAVRFLDNVIDVNRYPLPEIAEETKA 291 (464)
T ss_pred CCEEECCCCCCCCCCCCC----CEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 745525744141678977----5122631297772277875545599999999999998877776414541789999998
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHH
Q ss_conf 31000211118899997296323378899999999998577999789875311778876678121387624466300552
Q gi|254780502|r 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 (954)
Q Consensus 653 ~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~ 732 (954)
+|+||||+|||||+|+++||+|+|+||++|+++|||.|+|+|++||++||+|||+||.|++|+|++|.++.+.
T Consensus 292 ~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~~~i~~~a~~aS~~LAkE~G~fp~f~~s~~~~g~~~~~~------- 364 (464)
T cd02888 292 TRRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVNA------- 364 (464)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCH-------
T ss_conf 6650653011899999779896998999999999999999999999999998689987676956607867521-------
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf 25334540210272899999998412044301107743687783889884756012034532676136646589998998
Q gi|254780502|r 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 (954)
Q Consensus 733 ~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~ 812 (954)
..+|++|+++|++||+|||+++|||||||||+|+|||+||||+|
T Consensus 365 ----------~~~w~~l~~~i~~~G~RNs~l~aiAPTgSiS~i~g~s~giEP~f-------------------------- 408 (464)
T cd02888 365 ----------KELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF-------------------------- 408 (464)
T ss_pred ----------HHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCCCCCCCC--------------------------
T ss_conf ----------23579999998763700541001587169988538998728478--------------------------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHH
Q ss_conf 58986899999985199627764488678865052220688999999985206300523204754-89998999999999
Q gi|254780502|r 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 (954)
Q Consensus 813 ~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~ 891 (954)
+|.|||+|||++|||||||||+|+|+ +++|++||.++|++
T Consensus 409 ---------------------------------------~~~~~v~~~a~~Qk~iD~~iS~tin~p~~~t~~di~~~y~~ 449 (464)
T cd02888 409 ---------------------------------------SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYLL 449 (464)
T ss_pred ---------------------------------------CHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf ---------------------------------------86999999998636451123063147999999999999999
Q ss_pred HHHCCCCEEEEECCC
Q ss_conf 997298679796588
Q gi|254780502|r 892 AWLMGLKTTYYLRSR 906 (954)
Q Consensus 892 Aw~~GlKt~yy~R~~ 906 (954)
||++|||++|+||++
T Consensus 450 Aw~~G~KgiTvYRdg 464 (464)
T cd02888 450 AWKLGLKGITVYRDG 464 (464)
T ss_pred HHHHCCCCEEEECCC
T ss_conf 998489826870899
No 26
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=0 Score=1158.06 Aligned_cols=542 Identities=23% Similarity=0.390 Sum_probs=483.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 45368999999999743303586112221002-22232110254766413589999899999851054441012443111
Q gi|254780502|r 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 (954)
Q Consensus 333 ~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~-~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~G 411 (954)
.|-..+-.|.-.+|..|++.|+||+|||.|+. ++|+|+|||++|+|||++||+.+++.|+|+|+|||+|++||+|||+|
T Consensus 121 ~d~~~f~~e~~~~l~~q~~a~nsp~wfn~g~~~~~Q~sACFv~~v~D~~~~I~d~~~~~a~ifK~G~GtG~nfS~lR~~~ 200 (957)
T PRK06556 121 ADAEIFEHELTWLLLHQKFSFNSPVWFNVGTSSRQQVSACFILSVDDSMESILDWYKEEGMLFKGGSGTGTNLSRIRSSK 200 (957)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCC
T ss_conf 78999999999999975527999802667888888741577723655699999999997762215784561501147789
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCHHHHHHHCCCCCCHHHH---------------
Q ss_conf 20001278764288999999899999740466-67724789835678899997302578730233---------------
Q gi|254780502|r 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR--------------- 475 (954)
Q Consensus 412 s~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~-RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r--------------- 475 (954)
+.| +++|+|||||||||+||.++.+|+|||+ ||||+|+.|++|||||++||++|....+ ..|
T Consensus 201 ~~~-s~gG~aSGPvSFM~v~D~~~~~IksGG~tRRgA~M~il~vdHPDI~eFI~~K~~ee~-k~~~l~~~g~d~~~~~~~ 278 (957)
T PRK06556 201 ELL-SGGGTASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFIECKAREED-KARALRDAGYDMDLGGEA 278 (957)
T ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHH-HHHHHHHCCCCCCCCCCC
T ss_conf 856-899834762889999999877998488755544068872888519999987502425-566787615666767531
Q ss_pred -----HHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHH
Q ss_conf -----202320203487999985212874787101144410013443789987787521048860577866889999999
Q gi|254780502|r 476 -----THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 (954)
Q Consensus 476 -----~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~ 550 (954)
-.|+|.||.|+|.||++|++|++|.|..|.+ .+++++|+||+||++|+
T Consensus 279 ~~~v~~qNfN~SV~vtd~FM~Av~~d~~~~L~~~~~---------------------------g~v~~~v~Ar~L~~~I~ 331 (957)
T PRK06556 279 YASVQYQNANNSVRVSDEFMRAVEDDETFGLRARTD---------------------------GSVIETVDAKDLFRKIA 331 (957)
T ss_pred EEECCCCCCEEEEEECHHHHHHHHCCCCEEEEECCC---------------------------CCEEEEECHHHHHHHHH
T ss_conf 000041303236974799999986699626781478---------------------------96404874999999999
Q ss_pred HHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCHHHHHHHHHHHH
Q ss_conf 99988288127833112022212466703404675200136654433211125540686254-34479888558999999
Q gi|254780502|r 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAV 629 (954)
Q Consensus 551 ~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~-~~~~D~~~l~~~v~~av 629 (954)
+++|++|+||++|.|++|++||.++.|.|.+||||+|++|+++++ ||||||||.+|+. ++.|||+.|+++|+++|
T Consensus 332 ~~AW~~gdPGv~F~D~iN~~n~~p~~g~I~aTNPCgE~~ll~~~a----CnLgSiNL~~f~~~d~~fD~e~~~~~v~~~~ 407 (957)
T PRK06556 332 EAAWECADPGMQYDDTINAWHTCPETGRINASNPCSEYMFLDNSS----CNLASLNLMKFLDPDGTFDVESFRHAVELVI 407 (957)
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCC----HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 998634896011423565358886668455157876737799961----1104415999857798387999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99765311210001888886443310002111188999972963233788999999999985779997898753117788
Q gi|254780502|r 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 (954)
Q Consensus 630 r~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~ 709 (954)
||||||||.|.||+|+++..++++|+||||+|||+++|+++||||||+||+.|+++|+..|...||++|++||+|+|+||
T Consensus 408 ~~LD~vId~~~fP~~~I~~~t~~~R~iGLG~~gla~lL~~lGipYdS~ea~~~a~~i~~~m~~~ay~~S~eLA~e~G~Fp 487 (957)
T PRK06556 408 TAMEISICFADFPTEKIGKNTRAFRQLGLGYANLGALLMASGLPYDSDGGRALAAAITSLMTGTAYRRSAELAGVVGPFD 487 (957)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99997633512980999999983786364055299999976998699999999999999999999999999999649985
Q ss_pred CCCCCHHHCCCCCHHHHHCCHHHCC---CC--------CCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
Q ss_conf 7667812138762446630055225---33--------454021027289999999841204430110774368778388
Q gi|254780502|r 710 SFKGSLWDQGVFPIDSIGLLAEVRD---EL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 (954)
Q Consensus 710 ~f~gS~~~~G~~~~d~~~~~~~~~~---~~--------~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~ 778 (954)
.|+.+.... .....+.+. .+ ......+..|+.+.+...+||+||+++++||||||||+|+||
T Consensus 488 ~~~~n~~~~-------l~v~r~h~~a~~~i~~~~~~~~~l~~~~~~~w~~~~~~g~~~G~RNa~~ttIAPTGTIsl~~dc 560 (957)
T PRK06556 488 GYARNAEPH-------LRVMRKHAAANDSINPVDDVDTPLLAAAKEAWDDALELGEKHGFRNAQVSVLAPTGTIGFMMDC 560 (957)
T ss_pred CHHHHHHHH-------HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECC
T ss_conf 543426889-------9999988875313676333417899999887899886544305332203555588725676437
Q ss_pred -CCCCCCCCHHEEEEECC-CCCEEEECHHHHHHHHHCCCCCHHHHHHHH--HCCCCCCCCCCCCHHHHHHCCCHHC----
Q ss_conf -98847560120345326-761366465899989985898689999998--5199627764488678865052220----
Q gi|254780502|r 779 -SQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLK--YHDGSIGNIERIPDDLKKIHATAFE---- 850 (954)
Q Consensus 779 -s~gIEP~~a~~y~r~~~-~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~--~~~Gsv~~i~~ip~~~k~~f~ta~e---- 850 (954)
|+||||.|+++|.|++. +|.|.+|||.+.+.|+++|++.+++...+. ..+|+++++|.+|++++++|+||++
T Consensus 561 ~SsGIEP~FAlv~~kk~~ggg~~~ivn~~~~~~l~~lGy~~~~~~~i~~~i~~~G~i~~~p~l~~e~~~vF~tA~~~~~g 640 (957)
T PRK06556 561 DTTGIEPDLALVKYKKLVGGGSMKIVNQTVPLALKKLGYSEEQIEAIVEYIAEHGTIEGAPGLKPEHYAVFDCAFKPANG 640 (957)
T ss_pred CCCCCCCCCHHEEEEEECCCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 77775866023057885378538984377899999838977889999999986498478887777776565321012456
Q ss_pred ---CCHHHHHHHHHHHCCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHH
Q ss_conf ---688999999985206300523204754-89998999999999997298679796588411-11210
Q gi|254780502|r 851 ---IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKS 914 (954)
Q Consensus 851 ---i~~~~~i~~~a~~Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~-~~ek~ 914 (954)
|+|+|||+|||+.|||||+|||||+|| +++|++|+.++|++||++|||++++||++|.. |++..
T Consensus 641 ~r~Isp~~HV~MqAA~Q~~id~AISKTVNlP~dATvEDv~~~Y~~AwklGlKgiTvYRDGSk~~QpL~~ 709 (957)
T PRK06556 641 ERSISPMGHVRMMAAVQPFISGAISKTVNMPEDATVEDIEEAYFESWKLGLKALAIYRDNCKVGQPLNT 709 (957)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf 666799999999999666612555051048887999999999999998489469985589845573104
No 27
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=0 Score=1059.02 Aligned_cols=567 Identities=25% Similarity=0.404 Sum_probs=480.5
Q ss_pred CHHHHHHHHHHHHHC--CC---CCCHHHHHHHHH----HHHHCCCCCCCCHHHHHHC-----------------------
Q ss_conf 889999999965416--45---453689999999----9974330358611222100-----------------------
Q gi|254780502|r 316 MPQAFFMRVAMGLAL--KE---TEKEKRAVEFYN----LLSSFHFMCSTPTLFNSGT----------------------- 363 (954)
Q Consensus 316 ~pQ~~~mrVA~~la~--~e---~~~~~~~~~~Y~----~ls~~~~~~atPtl~Nagt----------------------- 363 (954)
+-.+.|-|+|-..+. -+ -+.++.+.-||+ ||..|+..|+||.|||.|.
T Consensus 105 s~~q~~~r~~~~~~~wg~~~gyf~~~~da~~f~~e~~~~l~~q~~a~nsp~wfn~gl~~~ygi~g~~~g~~~~d~~~~~~ 184 (1177)
T PRK07562 105 SAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPKTGKL 184 (1177)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHCCCCCCCCCCEEECCCCCCE
T ss_conf 09999999999999887637830788899999999999999745278998327867401016667777733225655721
Q ss_pred -------CCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -------22223211025476641---35899998999998510544410124431112000127876428899999989
Q gi|254780502|r 364 -------RHPQLSSCFLTTVPDDL---YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 (954)
Q Consensus 364 -------~~~qlsSCfl~~v~Dsl---~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~ 433 (954)
.+||.++||+..|+||| +||++.+...|+|+|+|||+|.|||+||+.|.++.| +|+|||||||||+||.
T Consensus 185 ~~~~~~y~~pq~~acfi~sv~d~l~~~~~i~~~~~~ea~~fk~GsG~G~nfS~lR~~~e~lsg-GG~aSGPvSFMki~D~ 263 (1177)
T PRK07562 185 TKSKSAYEHPQPHACFIQSVEDDLVNEGGIMDLWVREARLFKYGSGTGTNFSNLRGEGEKLSG-GGKSSGLMSFLKIGDR 263 (1177)
T ss_pred ECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHH
T ss_conf 115762337776546788523334475409999998665431577367362113678885789-9866860789999898
Q ss_pred HHHHHHCCC-CCCCCEEEEEECCCCCHHHHHHHCCCC---------C----------------------C---HHHHH--
Q ss_conf 999974046-667724789835678899997302578---------7----------------------3---02332--
Q gi|254780502|r 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNT---------G----------------------D---DRRRT-- 476 (954)
Q Consensus 434 ~~~~v~QgG-~RrGA~~~~l~~wH~Di~eFl~~k~n~---------G----------------------~---~~~r~-- 476 (954)
++.+|+||| +||||.|+.|++|||||++||++|... | + |..++
T Consensus 264 aa~aIKsGG~tRRaAkM~iL~vDHPDIeeFI~~K~~EE~Kv~aLv~g~~~~~~~l~~i~~a~~~~~~~~~~~fDp~~n~~ 343 (1177)
T PRK07562 264 AAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIDWKVKEEQKVASLVTGSKINSKHLKAIMKACVNCEGSGDDCFDPAKNPA 343 (1177)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 77599737976664415774488864899987610211225766400077899999999987414433112357311667
Q ss_pred ---------------------------------------------------HCCCHHHCCCHHHHHHHHCCCCEEEEECC
Q ss_conf ---------------------------------------------------02320203487999985212874787101
Q gi|254780502|r 477 ---------------------------------------------------HDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 (954)
Q Consensus 477 ---------------------------------------------------~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~ 505 (954)
.|.|.+|.|+|.||++|++|++|.|..|.
T Consensus 344 l~~~i~~A~~~~vp~~~i~rv~~~~~qG~~~i~f~~yd~~~~~eay~tv~gqN~N~SV~vtD~FM~AVe~D~~~~L~~r~ 423 (1177)
T PRK07562 344 LKREIKAAKKALVPENYIKRVIQLARQGYTDIDFPTYDTDWDSEAYLTVSGQNSNNSVRVTDEFLRAVENDGDWNLTART 423 (1177)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECHHHHHHHHCCCCCEEEECC
T ss_conf 88999987750572777777777653155434543335666753124540102563386079999998659960358668
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCC
Q ss_conf 14441001344378998778752104886057786688999999999988288127833112022212466703404675
Q gi|254780502|r 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 (954)
Q Consensus 506 ~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC 585 (954)
+ .++.|+|+||+||++|++++|++|+||++|.|++|++||.++.|.|++||||
T Consensus 424 ~---------------------------G~v~ktv~AreLw~kI~~aAW~~gDPGl~F~dtIN~wht~p~~G~I~aTNPC 476 (1177)
T PRK07562 424 D---------------------------GKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGRIRASNPC 476 (1177)
T ss_pred C---------------------------CCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECCCC
T ss_conf 9---------------------------8542586599999999999986289850651113254788877855533687
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 200136654433211125540686254--344798885589999999976531121000188888644331000211118
Q gi|254780502|r 586 TEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 (954)
Q Consensus 586 ~Ei~l~~~~~e~~vCnL~SiNL~~~v~--~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Gl 663 (954)
+|++|+++.. ||||||||.+|+. ++.|||+.|+++|++++++||+|||.|.||++++.+.++++|+||||+|||
T Consensus 477 sE~~lld~~a----CNLgSiNL~~fv~~~~g~fD~e~l~~avrl~t~~LDi~V~~a~fP~~eIa~~s~~~R~iGLG~~gl 552 (1177)
T PRK07562 477 SEYMFLDDTA----CNLASLNLLTFRDEETGRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAELSYEFRTLGLGYANI 552 (1177)
T ss_pred CCCCCCCCCC----CCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCH
T ss_conf 6767788763----021313499760377880649999999999999998630122498099999874220347320469
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHC------------CCC-CHHHHHCCH
Q ss_conf 8999972963233788999999999985779997898753117788766781213------------876-244663005
Q gi|254780502|r 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ------------GVF-PIDSIGLLA 730 (954)
Q Consensus 664 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~------------G~~-~~d~~~~~~ 730 (954)
+++|+++||||||+||+.++.+|++.|...||++|++||+|+|+||.|+.+.... |.- -++.+...+
T Consensus 553 adlLm~lGipYDS~egrala~~i~a~mt~~Ay~~SaelA~e~G~Fp~y~~n~~~mlrViR~hr~aa~~~~~~ye~l~~~P 632 (1177)
T PRK07562 553 GGLLMTMGIPYDSPEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYAKNADHMLRVIRNHRRAAHGESEGYEGLSVNP 632 (1177)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999749987999999999999999999999999999997589865224189999998765544304654433234566
Q ss_pred HHCCCCCCC-----CHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCCCCCCHHEEEEECC-CCCEEEEC
Q ss_conf 522533454-----021027289999999841204430110774368778388-98847560120345326-76136646
Q gi|254780502|r 731 EVRDELAMN-----RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNM-SGDFTVVN 803 (954)
Q Consensus 731 ~~~~~~~~~-----~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~-s~gIEP~~a~~y~r~~~-~G~~~~vn 803 (954)
...+....+ ......|+...+..++||+||+++|+||||||||+++|| |+||||.|++++.|+.. +|.|.+||
T Consensus 633 ~~ld~~~~p~~~l~~~a~~~wd~al~~Gek~G~RNAq~TvIAPTGTIslimdcdSsGIEP~FALvk~kkl~gGg~~kivN 712 (1177)
T PRK07562 633 VPLDHANCPDADLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIIN 712 (1177)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHEECCCCCEEEEEC
T ss_conf 44652338628899999988999998777633210036763477852566437877768640566410004784367632
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHC--C-----------------------------------------------------
Q ss_conf 589998998589868999999851--9-----------------------------------------------------
Q gi|254780502|r 804 SFLVNELKQRDLWDEAMISDLKYH--D----------------------------------------------------- 828 (954)
Q Consensus 804 ~~l~~~l~~~g~~~~~~~~~i~~~--~----------------------------------------------------- 828 (954)
+.+.+.|+.+|+-.+++.....+. .
T Consensus 713 ~~v~~aL~~LgY~~~~i~~i~~y~~g~gsl~~~p~i~~~~l~~~Gf~~~~i~~ve~~l~~~fdI~~~fn~w~lGe~f~~~ 792 (1177)
T PRK07562 713 RAVPEALRTLGYSESQIAEIEAYAVGHGTLNGAPGINHSTLKAKGFTDEKIEKVEAALPSAFDIKFAFNKWTLGEDFCKD 792 (1177)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHCCCHHHHH
T ss_conf 67799999759977999999999850674037864368999875987889999987403334310013300125145564
Q ss_pred -------------------------------------CCCCCCCCCCHHHHHHCCCHHC--------CCHHHHHHHHHHH
Q ss_conf -------------------------------------9627764488678865052220--------6889999999852
Q gi|254780502|r 829 -------------------------------------GSIGNIERIPDDLKKIHATAFE--------IDPMWLIESASRR 863 (954)
Q Consensus 829 -------------------------------------Gsv~~i~~ip~~~k~~f~ta~e--------i~~~~~i~~~a~~ 863 (954)
+.|.+.|.|++++..+|.+|++ |+|++||+|||+.
T Consensus 793 ~lg~~~e~l~d~~fd~L~~lG~s~~ei~aan~~v~G~mtiegaP~Lk~ehl~VFdcA~~cg~~G~R~is~e~Hv~MqAA~ 872 (1177)
T PRK07562 793 TLGITAEQLNDPGFDLLEALGFSKKDIEAANDHVCGAMTLEGAPHLKAEHLPVFDCANPCGKIGKRYLSVESHIRMMAAA 872 (1177)
T ss_pred HCCCCHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 21888888437556789870888889988765503666315776667888878865010133564234899999999997
Q ss_pred CCHHCCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHH
Q ss_conf 06300523204754-8999899999999999729867979658841-111210
Q gi|254780502|r 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKS 914 (954)
Q Consensus 864 Q~~IDqsiS~tl~~-~~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~-~~~ek~ 914 (954)
|||||.|||||+|| +++|++|+.++|++||++|||++++||++|+ +|++..
T Consensus 873 QpfidgAISKTINmP~~ATvEDv~~aY~~aw~lGlKgitvYRDGSKlsQpL~~ 925 (1177)
T PRK07562 873 QPFISGAISKTINMPNEATVEDCKNAYLLSWKLALKANALYRDGSKLSQPLNS 925 (1177)
T ss_pred HHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 77606876215769898999999999999998387557875168744564542
No 28
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain; InterPro: IPR013350 Proteins in this entry represent a small clade of ribonucleoside-diphosphate reductase alpha chains which are sufficiently divergent from the usual Class I ribonucleotide reductase (RNR) alpha chains (NrdE or NrdA, IPR013346 from INTERPRO) to form a distinct group. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain..
Probab=100.00 E-value=0 Score=873.61 Aligned_cols=509 Identities=33% Similarity=0.479 Sum_probs=468.3
Q ss_pred HHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999997621148927538899999999654164545368999999999743303586112221002222321102547
Q gi|254780502|r 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 (954)
Q Consensus 297 Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v 376 (954)
|-..|.+.||++ -++|.+.+.+||-.++... .......+||++|.++++..|||+++|-|+.||.+.|||...|
T Consensus 22 ~r~~~rrgYll~-----G~~v~~rvr~iA~~~e~l~-~~~gf~~rf~ey~arG~yslAtPvwaN~GldRGlPiSC~GsYv 95 (560)
T TIGR02510 22 GRSYLRRGYLLK-----GETVEDRVREIASTAEKLD-KVEGFEERFFEYLARGKYSLATPVWANYGLDRGLPISCYGSYV 95 (560)
T ss_pred HHHHHHCCCCCC-----CCCHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCC
T ss_conf 788865164578-----9776678999999998511-4740467889999840466326133305767897324304752
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 66413589999899999851054441012443111200012787642889999998999997404666772478983567
Q gi|254780502|r 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 (954)
Q Consensus 377 ~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH 456 (954)
+||+.+|+++..|++|++|.|||+..||+.|||+|++|+ ++|+|.|.-+|..+||..+.+++||-.|||-+++|+|+.|
T Consensus 96 ~Ds~~~il~~~aEVgM~~K~GgGTs~YlGd~RPRGa~I~-~nG~sNg~~~fa~lFD~~inv~~~g~tRRG~~AgY~D~eH 174 (560)
T TIGR02510 96 DDSVLDILEGQAEVGMMAKNGGGTSSYLGDIRPRGADIS-TNGESNGAYGFASLFDKVINVVTQGATRRGEFAGYVDVEH 174 (560)
T ss_pred CHHHHHHHCCCCCEEEEECCCCCHHHCCCCCCCCCCCCC-CCCCCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEECCC
T ss_conf 101898851243111220567640100366477889765-7875666445300013224420057877654102563357
Q ss_pred CCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 88999973025787302332023202034879999852128747871011444100134437899877875210488605
Q gi|254780502|r 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 (954)
Q Consensus 457 ~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~ 536 (954)
||++|++.+.+.+- -...|.++|-+-|.+||.++++..
T Consensus 175 pD~eEwl~i~~~~~----a~~~~~wgv~~gD~W~E~~~agD~-------------------------------------- 212 (560)
T TIGR02510 175 PDLEEWLGIQLEND----AVQSLGWGVEVGDDWLEKMIAGDP-------------------------------------- 212 (560)
T ss_pred CCHHHHHHHHCCCC----CCEEEEEEEEECCHHHHHHHCCCC--------------------------------------
T ss_conf 75898753211588----502788888856416888643781--------------------------------------
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCC--CCCC-EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 7786688999999999988288127833112022212--4667-034046752001366544332111255406862543
Q gi|254780502|r 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 (954)
Q Consensus 537 ~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~--~~~g-~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~ 613 (954)
.-+.+|.++++++.++|-|||+|+|++|..-|+ +..| +|++||||+||+||++++|++||+|+|+|+..|
T Consensus 213 ----ekrArWa~~~~sRa~~G~pY~~fr~~an~~aPqv~k~~G~~i~aS~LCtEIaLPS~~~esFvC~LSSlN~l~y--- 285 (560)
T TIGR02510 213 ----EKRARWAKLLKSRARVGIPYLLFRDNANELAPQVIKNSGIDIRASNLCTEIALPSDDEESFVCCLSSLNVLHY--- 285 (560)
T ss_pred ----HHHHHHHHHHHHHHHHCCCCEEECCCHHCCCCHHHHHCCCCEEECCCCCEECCCCCCCCCEEHHHHHHHHHHH---
T ss_conf ----1578999999999841886133222020026478784789076524211013787788424505665105553---
Q ss_pred CCCCHHHH--HHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 44798885--5899999999765311--------2100018888864433100021111889999729632337889999
Q gi|254780502|r 614 NQFDYDKL--ASTIRTAVRVLDNVID--------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 (954)
Q Consensus 614 ~~~D~~~l--~~~v~~avr~LDnVId--------~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~ 683 (954)
++. .+.|++.|+|||.|++ +.+ +++|-+.++|+|+||||++|||.+|+++.||++|.||.-.+
T Consensus 286 -----de~kDtDav~tlv~FLDsV~~eFi~kAkg~~y--~~rAvRFaer~RAiGlG~LGwHsYLQsnrIpfES~eA~~~n 358 (560)
T TIGR02510 286 -----DEWKDTDAVETLVRFLDSVLSEFIEKAKGLSY--MERAVRFAERARAIGLGVLGWHSYLQSNRIPFESGEAHLLN 358 (560)
T ss_pred -----HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf -----04543036899999998899999875216823--67898887511020235556666654045443587887632
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985779997898753117788766781213876244663005522533454021027289999999841204430
Q gi|254780502|r 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 (954)
Q Consensus 684 ~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l 763 (954)
.+|+.+|...|+++|.+||++.|.-+..+| +|+||+++
T Consensus 359 aei~k~Ik~raeeaSreLa~r~gEp~v~~g------------------------------------------~grRNATl 396 (560)
T TIGR02510 359 AEIYKTIKERAEEASRELAERYGEPEVLEG------------------------------------------KGRRNATL 396 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------------------------------------------CCCCHHHH
T ss_conf 389999999999987999973879875565------------------------------------------77621556
Q ss_pred CCCCCCHHHHHHHC-CCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 11077436877838-89884756012034532676136646589998998589868999999851996277644886788
Q gi|254780502|r 764 MAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 (954)
Q Consensus 764 ~aiAPT~t~S~i~g-~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k 842 (954)
+|||||-|+|+|+| +|+||||+.+|.|++....+.|+.-||+|.+-|+++|-..+.|++.+.+.+|||||+|.|.++.|
T Consensus 397 ~aiAPtkSSafilGqVSpsiEP~~sNyf~qd~~k~~v~~kNP~L~~vL~ekg~D~e~vwd~i~~hnGSVQHLD~LtDeEK 476 (560)
T TIGR02510 397 LAIAPTKSSAFILGQVSPSIEPLVSNYFIQDSNKGKVVYKNPVLAKVLKEKGKDQELVWDIITYHNGSVQHLDFLTDEEK 476 (560)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 55410035788724647774665331467765326753147279999873167778999999872797632223443310
Q ss_pred HHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEEC-C-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 65052220688999999985206300523204754-8-99989999999999972986797965884111
Q gi|254780502|r 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 (954)
Q Consensus 843 ~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~-~-~~t~~~i~~~y~~Aw~~GlKt~yy~R~~s~~~ 910 (954)
.+|||+.||+|+.+|+.||.||||||||||+||++ | +...++++.++..||+.|||++||.|+.++.+
T Consensus 477 ~VFKTf~EIsQ~aii~lAa~RQkHIDQ~QSlNL~i~p~e~p~~d~n~l~~~aw~~glKsLYY~~s~~~a~ 546 (560)
T TIGR02510 477 SVFKTFAEISQMAIIRLAAARQKHIDQAQSLNLVISPDEKPSKDVNVLRVFAWKKGLKSLYYQRSERGAQ 546 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHCEECCCCCCCHHHEEEEEEECCCCCHHHHHHHCCCHHH
T ss_conf 0321144421889999875305400022032101468988743010000021368741244453120332
No 29
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=100.00 E-value=0 Score=454.79 Aligned_cols=365 Identities=21% Similarity=0.231 Sum_probs=312.9
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHH---------------HHHHHHHHHHHHHHH--CCCCCC
Q ss_conf 999999974330358611222100222232110254766413---------------589999899999851--054441
Q gi|254780502|r 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY---------------GIFGALQENAMLAKY--SGGLGN 402 (954)
Q Consensus 340 ~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~---------------~I~~~~~~~a~isk~--ggGiG~ 402 (954)
.+||+...++.+++..|+ .|++||+|++++|.|+ .+..+.+-.|.+.++ |||+++
T Consensus 2 ~~~~~~~~~~~~~~~~p~--------~p~~nC~li~~~dmL~~G~~~~~e~p~s~~~A~~~~~qiia~vas~q~ggG~s~ 73 (401)
T cd00576 2 ERIYEAVKSGVITVGRPD--------LPFTGCVLVDYGDSLDPGIKGVNETAKSINEAIQKTYQIIALAASNQNGGGVSF 73 (401)
T ss_pred CHHHHHHHHCCCCCCCCC--------CCCCEEEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 168899874541378888--------770205899864434346414677872199999999999999996466666612
Q ss_pred CC--CCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-----CCHHHHHHHCCCCCCHHH
Q ss_conf 01--24431112000-12787642889999998999997404666772478983567-----889999730257873023
Q gi|254780502|r 403 DW--TPVRGLGAHIH-GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH-----IDVEEFLDLRKNTGDDRR 474 (954)
Q Consensus 403 ~~--s~iR~~Gs~I~-g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH-----~Di~eFl~~k~n~G~~~~ 474 (954)
+. +.+||.++..+ .+.|+++|++|||++|+..+.++.|||.|+|++|++|+.|| +|+++||.+|.+.|.+..
T Consensus 74 ~ri~~~l~p~~~~~~~~~~~t~~g~~~fmq~f~~~i~ti~q~ggr~g~~t~~l~~~h~~~~~~i~~~~l~~k~~~g~~~~ 153 (401)
T cd00576 74 ARASSILSPYGSRDYAKGSGTETDAVEAADAFNLALKEVGQGNGRTGAATGFIGGVHKGKGDKISQEFLNLALANGGEGI 153 (401)
T ss_pred CHHHCCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 51321256400221257855661616699999999999773699775589998489763203679999999985799777
Q ss_pred HHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHH
Q ss_conf 32023202034879999852128747871011444100134437899877875210488605778668899999999998
Q gi|254780502|r 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 (954)
Q Consensus 475 r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~ 554 (954)
+....+++|.+++.|++ +.++|++||+++++++|
T Consensus 154 ~~~fp~l~v~i~~~~~~----------------------------------------------~~~~a~~l~~l~~~~a~ 187 (401)
T cd00576 154 PLNFPNLSVRVSSDKPG----------------------------------------------ILVKAVELKQLIAEEAR 187 (401)
T ss_pred CCCCCCEEEEECCCCCC----------------------------------------------CCCCHHHHHHHHHHHHH
T ss_conf 67777269995788755----------------------------------------------67778999999999999
Q ss_pred HHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHHH
Q ss_conf 828812783311202221246670340467520013665443321112554068625434-----479888558999999
Q gi|254780502|r 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAV 629 (954)
Q Consensus 555 etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-----~~D~~~l~~~v~~av 629 (954)
+||+|+++|.+ .|||+|+||++++... ..+|+.|++++++++
T Consensus 188 k~g~P~ii~~~---------------------------------~cn~~siNL~ri~l~a~~g~~~~~~~~Lee~~~lav 234 (401)
T cd00576 188 KTGSPGIFNDE---------------------------------LCNLVSLNLARIMEKAINGSMDVVLEELEELAFLAV 234 (401)
T ss_pred HHCCCCEEECC---------------------------------CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87899889734---------------------------------457886618999875247878879999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9976531121000188888644331000211118899997296323-378899999999998577999789875311778
Q gi|254780502|r 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA-SPEAVEIADESMEFISFHAISASVELAQERGAY 708 (954)
Q Consensus 630 r~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~-S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~ 708 (954)
|+||++||.+.||+|+++...+.+|+||||+||||++|+++|++|. ++|+.+|+.++|+.|.+++.++|.+
T Consensus 235 raLd~~id~~~~p~~~~~~~~~~~rtIgLG~iGlae~l~~lg~~~~~~~ea~~~a~~i~~~l~~~~~k~s~e-------- 306 (401)
T cd00576 235 RALDCVIDSHDERIPTIELGGDERRTVGLGIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLVKATNE-------- 306 (401)
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 999999997256378999860598068454989999999939987898789999999999999999997674--------
Q ss_pred CCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf 87667812138762446630055225334540210272899999998412044301107743687783889884756012
Q gi|254780502|r 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 (954)
Q Consensus 709 ~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~ 788 (954)
.||+..++++|++|+|.+.++|+||||.+..
T Consensus 307 -------------------------------------------------~~~~~s~~~tPseS~t~~~~~tng~~P~~~~ 337 (401)
T cd00576 307 -------------------------------------------------RGFNFLLGLSPSESNSSGAPATNGVSPSRGX 337 (401)
T ss_pred -------------------------------------------------HCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf -------------------------------------------------4974001347466000665767871777687
Q ss_pred EEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHC
Q ss_conf 03453267613664658999899858986899999985199627764488678865052220688999999985206300
Q gi|254780502|r 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 (954)
Q Consensus 789 ~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~ID 868 (954)
++ +.++.+|+|.|+++++|..|+|.|
T Consensus 338 ~~------------------------------------------------------~~v~~~i~p~~kl~~ea~fq~~s~ 363 (401)
T cd00576 338 IA------------------------------------------------------IVLNGDIGPEESLASVAILQFYAD 363 (401)
T ss_pred CE------------------------------------------------------EEECCCCCHHHHHHHHHHCHHHCC
T ss_conf 13------------------------------------------------------651468988998766540332458
Q ss_pred CCEEEEEECCC-C-CHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 52320475489-9-9899999999999729867979
Q gi|254780502|r 869 QAQSLNLYLDE-P-SGKKLDFIYRQAWLMGLKTTYY 902 (954)
Q Consensus 869 qsiS~tl~~~~-~-t~~~i~~~y~~Aw~~GlKt~yy 902 (954)
+|+|+|+++|+ . ..+.|..+..+||..|.+.+++
T Consensus 364 gg~i~yve~Pn~~~n~~aL~~v~d~a~~~~~~~~~v 399 (401)
T cd00576 364 NGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRV 399 (401)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 976985768985529899999999998638713047
No 30
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=1.7e-43 Score=341.59 Aligned_cols=403 Identities=20% Similarity=0.207 Sum_probs=292.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH------------------
Q ss_conf 254766413589999899999851054--441012443111200012787642889999998------------------
Q gi|254780502|r 373 LTTVPDDLYGIFGALQENAMLAKYSGG--LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN------------------ 432 (954)
Q Consensus 373 l~~v~Dsl~~I~~~~~~~a~isk~ggG--iG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n------------------ 432 (954)
.+.|+||.+|..++++.... +.+.|| +-+|+|.|||.|++|+|+||+||||.|+.++++
T Consensus 165 ~~~V~DSrEGWa~Al~~Ll~-~~~~~~~~~~~D~S~IRp~Ga~lk~fGG~AsGp~pL~~~~~~i~~il~~~~g~~L~~i~ 243 (658)
T cd01676 165 IIKVPDSREGWVKSVQLLLD-LYFNPAQTLIFDYSDIRPAGERLKGFGGIASGPEPLKKLHKAIAAILNDRSGKPLTSVD 243 (658)
T ss_pred EEEECCCHHHHHHHHHHHHH-HHHCCCCCEEEEHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 99948988999999999999-97189984587866757689832326736458388999999999998764078766210
Q ss_pred ------HHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf ------99999740466677247898356788999973025787302332023202034879999852128747871011
Q gi|254780502|r 433 ------DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 (954)
Q Consensus 433 ------~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~ 506 (954)
.++.+|..||+||.|.+... +||..+|+.+|.+.=...+.. .++..||.- +
T Consensus 244 ~~Di~~~ig~~VvaGgvRRsA~i~l~---~~~D~e~~~aK~~~w~~~~~~-------------~r~~sNnSv---~---- 300 (658)
T cd01676 244 IVDLMNLIGVCVVSGNVRRSAEIAFG---QPEDEDFADLKQYQWNPGRRE-------------HGWASNNSV---V---- 300 (658)
T ss_pred HHHHHHHHHHHHCCCCCHHCEEEECC---CCCHHHHHHHCCCCCCCCCHH-------------HHHHCCCEE---E----
T ss_conf 99998888788302661002055435---802588987213666777677-------------775427759---9----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCC------CCCCEEE
Q ss_conf 4441001344378998778752104886057786688999999999988288127833112022212------4667034
Q gi|254780502|r 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ------QHVGVVH 580 (954)
Q Consensus 507 ~~~L~d~~g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~------~~~g~I~ 580 (954)
++.-+.++-+..+......+||||++|.++..++.+. .|-..+.
T Consensus 301 ------------------------------~~~k~~~~~~~~~~~~~~~sGEpGi~n~~~a~~~~~~~~~~~~~~~~~~~ 350 (658)
T cd01676 301 ------------------------------FESKPDRLEYSFACMLIRGNGEPGIAWLDNMKAYARMVLLTTPYHDLRAK 350 (658)
T ss_pred ------------------------------EECCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf ------------------------------81389889999999987438997565579899865532687766455423
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 04675200136654433211125540686254344798885589999999976531121000188888644331000211
Q gi|254780502|r 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 (954)
Q Consensus 581 ~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv 660 (954)
.+|||+||.|-++.- |||+.||+.++.. |.+.|.++++.|.++...+...+++ -|.-++..++.|.||+|+
T Consensus 351 GtNPC~EI~L~~~ef----CNL~EV~~~~~~~----~~~~l~~~~~lA~~~~~~~T~~~~~-~~~~~~~~~~nrliGVSl 421 (658)
T cd01676 351 GGNPCGEISLESYEL----CNLVEVFPLKHEG----DLEDLQETLYLAGRYAKTVTLLPLH-WEITNEIILRNRRIGVSM 421 (658)
T ss_pred CCCCCEEEECCCCCC----CCCEEEECCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCEEEE
T ss_conf 468741010368986----3120575134688----3999999999999999999816653-788999987600000323
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCC
Q ss_conf 11889999729632337889999999999857799978987531177887667812138762446630055225334540
Q gi|254780502|r 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 (954)
Q Consensus 661 ~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~ 740 (954)
+|++|++...|-.+..++ ..++...++..+..+..+.|++.|--
T Consensus 422 TGI~d~~~~~~~~~~~~~----l~~~l~~~~~~v~~~~~~~A~~lgi~-------------------------------- 465 (658)
T cd01676 422 SGIADFIVRAGGDLTLHD----LKRWRNIGYEAVYQYDERLSKWLGIP-------------------------------- 465 (658)
T ss_pred EEHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------------
T ss_conf 235056564388400899----99999999999999999999970999--------------------------------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHH
Q ss_conf 21027289999999841204430110774368778388988475601203453267613664658999899858986899
Q gi|254780502|r 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 (954)
Q Consensus 741 ~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~ 820 (954)
+...+|+|.|+||+|+++|+|+||+|.++..|.|++..+. +.-|...|++.|+..+.-
T Consensus 466 ------------------~~~~~t~vkPsGt~s~l~~~~~GiH~~~~~yyiRrvr~~~----~dpl~~~l~~~Gy~ve~~ 523 (658)
T cd01676 466 ------------------LSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQK----HDPLAPALIAAGYHVEPD 523 (658)
T ss_pred ------------------CCCCEEEECCCCCEECCCCCCCCCCCCCCHHHHHEEECCC----CCHHHHHHHHCCCCCCCC
T ss_conf ------------------5313135568886101158788777541346670011557----885899999829987787
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCC-HHCCCEEEEEECC-CCCHHHHHHHHHHHHHCCCC
Q ss_conf 999985199627764488678865052220688999999985206-3005232047548-99989999999999972986
Q gi|254780502|r 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 (954)
Q Consensus 821 ~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~-~IDqsiS~tl~~~-~~t~~~i~~~y~~Aw~~GlK 898 (954)
+...+..|. .+|-+..+.-.++.|++...++++++..|+ |.||..|.|+++. +....+|.+.... +.-.+|
T Consensus 524 ---~~~~~t~Vv---~fPvk~~~~~~~~~d~sa~eqL~~~~~~q~~W~d~~vS~Tv~~~~~~E~~~v~~wl~~-n~~~~~ 596 (658)
T cd01676 524 ---IYDPTSVLV---EFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQ-FQYQYK 596 (658)
T ss_pred ---CCCCCCEEE---EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH-CCCCEE
T ss_conf ---579996799---9987768776253437799999999999986576887279997961549999999985-558636
Q ss_pred EEEEE
Q ss_conf 79796
Q gi|254780502|r 899 TTYYL 903 (954)
Q Consensus 899 t~yy~ 903 (954)
|+..+
T Consensus 597 gvSfL 601 (658)
T cd01676 597 SVSLL 601 (658)
T ss_pred EEEEE
T ss_conf 99971
No 31
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=100.00 E-value=2.7e-29 Score=236.20 Aligned_cols=96 Identities=34% Similarity=0.543 Sum_probs=84.3
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
|+|+||||++|+||++||.+||.|||.++.+. .++.+.+++.+|++.+... ....++||+|||+||.+||+
T Consensus 3 ~~V~KRDG~~v~Fd~~KI~~AI~KA~~~~g~~-------~~~~~~~~~~~v~~~i~~~--~~~~~sVe~IQd~VE~~L~e 73 (703)
T PRK07111 3 LYVVKRDGREVEFNEEKITNAIKKAAEAIGIE-------DESEALELTQKVIKYIEDS--NKEEITVEEIQDLVEKVLME 73 (703)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHH
T ss_conf 28991689878878799999999999860887-------7899999999999999982--79999799999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1208999998890999999998764
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVRAAQS 133 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R~~~~ 133 (954)
.||++|||+||+||++|++.|+...
T Consensus 74 ~g~~~vAkaYi~YR~~r~~~R~~~~ 98 (703)
T PRK07111 74 NGHKEIAKAYIIYREERTKIREIKS 98 (703)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8859999999999999999887676
No 32
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; InterPro: IPR013345 This entry represents a group of adenosylcobalamin (AdoCbl or coenzymeB12)-dependent ribonucleotide reductases (RNR) related to the characterised species from Lactococcus leichmannii . RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies NrdJ enzymes only in cyanobacteria, Lactococcus and certain bacteriophages. A separate model (IPR013344 from INTERPRO) identifies a larger group of divergent B12-dependent RNR's.; GO: 0000166 nucleotide binding, 0008998 ribonucleoside-triphosphate reductase activity, 0016960 class II ribonucleotide reductase activity, 0031419 cobalamin binding.
Probab=100.00 E-value=1.8e-33 Score=267.19 Aligned_cols=435 Identities=21% Similarity=0.254 Sum_probs=285.2
Q ss_pred CCCCCHHHHHHHHHHHHHHH---HHC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---------------
Q ss_conf 47664135899998999998---510---544410124431112000127876428899999989---------------
Q gi|254780502|r 375 TVPDDLYGIFGALQENAMLA---KYS---GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND--------------- 433 (954)
Q Consensus 375 ~v~Dsl~~I~~~~~~~a~is---k~g---gGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~--------------- 433 (954)
.++||-+|...++...--+. ..+ --+-+|+|.|||.|..|+|+||.||||+|..++|-+
T Consensus 209 ~~~Dsr~GWv~A~~~L~~~~f~~~~a~r~~~l~lDlS~vRp~G~~LkGFGG~AsGp~~L~~~~~~v~~iL~rCareGeqy 288 (827)
T TIGR02505 209 VVEDSREGWVKAVALLIDLHFDEQVADRKRKLVLDLSDVRPAGEKLKGFGGTASGPVPLAKMLTEVAEILSRCAREGEQY 288 (827)
T ss_pred ECCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51711889999999998621531168870568886514241266101266445673889999999999840331003456
Q ss_pred -------------------HHHHHHCCCCCCCCEEEEEECC----------------------CCCHHHHHHHCCCCCCH
Q ss_conf -------------------9999740466677247898356----------------------78899997302578730
Q gi|254780502|r 434 -------------------TAVAVNQGGKRKGAVCAYLETW----------------------HIDVEEFLDLRKNTGDD 472 (954)
Q Consensus 434 -------------------~~~~v~QgG~RrGA~~~~l~~w----------------------H~Di~eFl~~k~n~G~~ 472 (954)
.+.+|.-||.||.|.|+.++.. .||.+.|-.+|+..+..
T Consensus 289 r~~~g~~LT~~d~~~i~~~~a~~vvAGnvRRSA~~al~~~~dlaaaeakenlWqqdaeGnWrid~~~~~~~~~~~~~~~h 368 (827)
T TIGR02505 289 RKKSGGRLTSVDALDIVNLIAKIVVAGNVRRSAEMALFSADDLAAAEAKENLWQQDAEGNWRIDPEVEAFKIAKKKRVYH 368 (827)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 66516501477899999887320234882355898730477777777766443104567733271279999887541121
Q ss_pred HHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHH
Q ss_conf 23320232020348799998521287478710114441001344-37899877875210488605778668899999999
Q gi|254780502|r 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK-EFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 (954)
Q Consensus 473 ~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~-~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~ 551 (954)
+ +..+..+.+ .+ - +..|.--|. .| +..-+.+.. ......+.+.+.-|-...-+
T Consensus 369 ~-W~~~~~v~~--~~--r-----------------kqfhsGeGaiqf--a~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 422 (827)
T TIGR02505 369 R-WASNNSVEV--DS--R-----------------KQFHSGEGAIQF--AFSALARSK--ADLLETEEVKQLRLDLALSE 422 (827)
T ss_pred C-CCCCCEEHH--HH--H-----------------HHHCCCCCHHHH--HHHHHCCCC--CCCCCCCCHHHHHHHHCCCC
T ss_conf 1-236650010--10--1-----------------232046524453--245521367--88555420133432201688
Q ss_pred HHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 998828812783311202221246670340467520013665443321112554068625434-4798885589999999
Q gi|254780502|r 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVR 630 (954)
Q Consensus 552 ~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~-~~D~~~l~~~v~~avr 630 (954)
-....|.|++......|...+.+.+| ++++|||+||.|-..+- |||+.|||..|..++ ..|+..|.++-++|.|
T Consensus 423 G~~~~G~~~~~~~~~~~~~~~~~rlG-~~G~NPCgEI~L~~~~p----CNL~ev~~~~~~~~~~ktdy~dl~~af~laar 497 (827)
T TIGR02505 423 GKIVNGEWLQTDSSLEDAGEAEERLG-VKGTNPCGEILLANKEP----CNLAEVNLLAFEEDKEKTDYVDLERAFKLAAR 497 (827)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCC-EEECCCCEEEECCCCCC----CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 85103776543457545276755420-34258750455678897----54444337650267776462669999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC-----CCCC----CH--------HHHHHHHHHHHHHHHH
Q ss_conf 97653112100018888864433100021111889999729-----6323----37--------8899999999998577
Q gi|254780502|r 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH-----IPYA----SP--------EAVEIADESMEFISFH 693 (954)
Q Consensus 631 ~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~g-----i~Y~----S~--------ea~~~~~~i~e~i~~~ 693 (954)
|+--+. ...|..|..+..-.++|+||+|++|+.|+|...+ ..|- .+ ..-+..-..+..|+-.
T Consensus 498 ~~~R~t-~~~~~~e~~re~~~~nrriGvs~~G~~dfL~~~~GnrvvT~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 576 (827)
T TIGR02505 498 FVARLT-FSRLEDEISREVLAKNRRIGVSFTGVADFLVLAGGNRVVTAFKDDFENERVELTEVRAFDKREAKFLKRMKKI 576 (827)
T ss_pred HHHHHH-HHHCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998876-3110353678899718911542203899999735750664101104788744444677631489999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99978987531177887667812138762446630055225334540210272899999998412044301107743687
Q gi|254780502|r 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 (954)
Q Consensus 694 a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S 773 (954)
..+|-.+.++|.+. -+-+.+++|+||||+|
T Consensus 577 v~~A~~~ys~~l~~--------------------------------------------------~~p~~~ttv~PsGT~s 606 (827)
T TIGR02505 577 VVKAAEDYSDELEL--------------------------------------------------PLPVKVTTVKPSGTIS 606 (827)
T ss_pred HHHHHHHHHHHCCC--------------------------------------------------CCCCCCEECCCCCCCC
T ss_conf 87899999975278--------------------------------------------------8885520137777310
Q ss_pred HHHC------CCCCCCCCCHHEEEEECCCCCEEEECH---HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCH-----
Q ss_conf 7838------898847560120345326761366465---89998998589868999999851996277644886-----
Q gi|254780502|r 774 NICG------VSQSIDPSYQNLYVKSNMSGDFTVVNS---FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD----- 839 (954)
Q Consensus 774 ~i~g------~s~gIEP~~a~~y~r~~~~G~~~~vn~---~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~----- 839 (954)
.|+| +++||.|+|+..|.|+.. |..-.| .++..++..||-..+-..+-. .++-+-.+|.=|.
T Consensus 607 kl~GteeWGe~~eG~H~~~~~yli~rI~---F~~~Dpdqfl~~~~~~a~GY~v~~~~y~~~-~~~~lv~~P~kPrCs~~~ 682 (827)
T TIGR02505 607 KLAGTEEWGEVSEGIHPPLGKYLIRRIR---FSKSDPDQFLLATALKAAGYTVEEDQYDKE-EQSVLVDIPVKPRCSETL 682 (827)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHCCCEECCCCCCCC-CCEEEEECCCCCCCCCCC
T ss_conf 1478753367888723568888863043---331773478879999718986524643457-664787448888676434
Q ss_pred ----------HHHHHCCCH-HCCCHHHHHHHHHHHC-CHHCCCEEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf ----------788650522-2068899999998520-6300523204754899989999999999972
Q gi|254780502|r 840 ----------DLKKIHATA-FEIDPMWLIESASRRQ-KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 (954)
Q Consensus 840 ----------~~k~~f~ta-~ei~~~~~i~~~a~~Q-~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~ 895 (954)
+...+-..+ .+++-...++.++..| -|.||++|.|+++.+-..+.|..+....|..
T Consensus 683 Ve~~~~~~~~~~~~~~~~~iN~~S~~~ql~~y~~~Qt~w~~~~vS~Ti~~~~~e~~~v~~~l~~~~D~ 750 (827)
T TIGR02505 683 VEFPAEVVGADNPDIEEVEINTLSALAQLAFYALLQTTWADNAVSATIELDPDEVEAVEEALRQARDN 750 (827)
T ss_pred CCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 55023432136776011212268999999999999998762031344664622014799999850011
No 33
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.97 E-value=2e-28 Score=229.70 Aligned_cols=94 Identities=36% Similarity=0.512 Sum_probs=83.2
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
.+|+||||++|+||++||.+||.|||.++++. .++.+.+|+..|+..+..+ ..++||+|||+||.+||+
T Consensus 2 ~~V~KRDG~~v~Fd~~KI~~AI~KA~~a~~~~-------~~~~a~~i~~~v~~~l~~~----~~~sVE~IQd~VE~~L~e 70 (681)
T PRK08270 2 TKIIKRDGRIVPFDAEKITDAIAKAGKATGEF-------DPAEAKRLADRVVEKLEDR----DIPSVEQIQDIVEKVLIE 70 (681)
T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHH
T ss_conf 94584899857878899999999999860788-------9899999999999998447----999889999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1208999998890999999998764
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVRAAQS 133 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R~~~~ 133 (954)
.||++|||+||+||++|++.|+...
T Consensus 71 ~g~~~vAkaYi~YR~~r~~~R~~~~ 95 (681)
T PRK08270 71 SGYFKTAKAYILYREQHKRLRNDRK 95 (681)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8849999999999999999987322
No 34
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.97 E-value=8e-28 Score=225.26 Aligned_cols=94 Identities=37% Similarity=0.505 Sum_probs=81.8
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
.+|+||||++|+||++||..||.|||.+++.. .++.+.+++.+|++.+.. ...++||+|||+||.+||+
T Consensus 3 ~~V~KRDG~~v~Fd~~KI~~AI~KA~~a~~~~-------~~~~a~~v~~~v~~~~~~----~~~~sVe~IQd~VE~~L~e 71 (711)
T PRK09263 3 PKVIKRDGRVVPFDSEKIKNAIEKAAKAVGVD-------DEDYAATVAAEVIERLAN----RKQVDIEEIQDAVENKLMA 71 (711)
T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHH
T ss_conf 83475589877878899999999999850776-------589999999999998616----8998799999999999996
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1208999998890999999998764
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVRAAQS 133 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R~~~~ 133 (954)
+||++|||+||+||++|++.|+...
T Consensus 72 ~g~~~~AkaYi~YR~~r~~~R~~~~ 96 (711)
T PRK09263 72 GPYKALARAYIEYRHDRDIAREKAT 96 (711)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8869999999999999999998520
No 35
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=99.79 E-value=4.1e-18 Score=153.23 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=146.1
Q ss_pred HHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 2116469802897322486799999999998704877--64321079999999999999998506678985211454899
Q gi|254780502|r 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG--ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQV 102 (954)
Q Consensus 25 ~~~~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~--~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~V 102 (954)
+.+.+.|+||||-.|||+.++|..|+..||+.+.... .+....+++-+..+|.+||..+.+....|.++.||.|||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1046)
T PRK12365 5 QEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEDHSPLPKDLEESIRSITHQVVKEVVQKITEGQVVTVERIQDMV 84 (1046)
T ss_pred HHHEEEEEEECCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH
T ss_conf 00014788436755126487899999998610102356899847699999999999999999973178578728999998
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCC---CCHH
Q ss_conf 9999861208999998890999999998764210000234422898059976025989999999998516666---8999
Q gi|254780502|r 103 ECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSK 179 (954)
Q Consensus 103 E~~LM~~g~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~---v~~~ 179 (954)
|-.|--+|..+|||.||+||.+|..-|+.. =..+.|++|||+..+|+..||...+..|---.++ ..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~s~~virRng~vv~f~~~kI~vA~tKAFlav~g~~~a~s~ 155 (1046)
T PRK12365 85 ESQLYVNGLQDVARDYIVYRDQRKAHRKKS---------WQSLSVIRRDGTSVKFNPMKISAALEKAFRATLKIEGMTPP 155 (1046)
T ss_pred HHHHHHHHHHHHHHHHEEEHHHHHHHHCCC---------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 877767567887643445500457762588---------63147994489332668999999999999984598644428
Q ss_pred HH-------HH----HHHHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99-------99----897303789--88899999999999987441877146779999999999
Q gi|254780502|r 180 IV-------LS----ETYKNMYDG--LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230 (954)
Q Consensus 180 ~i-------~~----~~~~~lydg--itt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~k 230 (954)
.| .. ...+...+| +..+||++.. ++.-....+..||-...+++-.+
T Consensus 156 ri~~~v~~lt~~v~~~~~rr~~~gg~~HIEdIQD~V-----El~LMr~G~~~VAraYILYReeR 214 (1046)
T PRK12365 156 ATLSEINDLTQKIVEEILELCSQEERIDIEEIQDIV-----EKQLMVVGHYDVAKNYILYREAR 214 (1046)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 899999999999999997528999806300447999-----99998677099999999989999
No 36
>pfam03477 ATP-cone ATP cone domain.
Probab=99.77 E-value=2.8e-18 Score=154.45 Aligned_cols=88 Identities=35% Similarity=0.453 Sum_probs=76.6
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
|+||||||+++|||++||..||.|||..... ..+.+..++..|...+..... ..+++|+|||+||.+||+
T Consensus 1 ~~ViKRdG~~~~Fd~~KI~~ai~~A~~~~~~--------~~~~~~~i~~~V~~~l~~~~~--~~i~~e~Iqd~Ve~~L~~ 70 (89)
T pfam03477 1 MKVIKRDGRREPFDREKIRRAIEKACEKREV--------DPDDAEEIAEEVEKELEDGGD--REISTEEIQDLVEKTLAE 70 (89)
T ss_pred CEEEECCCCEECCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHC
T ss_conf 9689389977464089999999999872267--------688899999999999998389--876799999999999981
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 120899999889099999
Q gi|254780502|r 109 SGHHKITREYVLYREERS 126 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra 126 (954)
.||+++||+||+||+.|.
T Consensus 71 ~~~~~~a~~yi~yR~~r~ 88 (89)
T pfam03477 71 HPDYAVARAYILYRNLRK 88 (89)
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 687999999999999852
No 37
>LOAD_ATP_cone consensus
Probab=99.76 E-value=3.5e-18 Score=153.72 Aligned_cols=89 Identities=25% Similarity=0.378 Sum_probs=75.3
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
|.|+||||+.+|||++||.+||.|||.++. ++.++.++..|...+..... ..++||+|||+||.+||+
T Consensus 1 l~ViKRdG~~~~F~~~KI~~ai~~A~~~~~----------~~~~~~~~~~v~~~l~~~~~--~~i~veeIqd~Ve~~L~~ 68 (89)
T LOAD_ATP_cone 1 LYVVKRDGRTEPFSRGKIARALTRACEGTP----------EDDAYAIAQEVEAELRKQGR--RGITTEEIQELVEEALAK 68 (89)
T ss_pred CEEEECCCCEEEEEHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHH
T ss_conf 979957993731109999999999986599----------76899999999999998568--998899999999999996
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 120899999889099999999
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVR 129 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R 129 (954)
.||++||++||+||+.|...|
T Consensus 69 ~~~~~vA~~yi~YR~~r~~~r 89 (89)
T LOAD_ATP_cone 69 LDYEEVAARYAVYRLFKDIKR 89 (89)
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 894999999999998760229
No 38
>pfam00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain.
Probab=99.72 E-value=1.1e-17 Score=150.00 Aligned_cols=76 Identities=46% Similarity=0.723 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCEEECHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCC
Q ss_conf 12898999999997621148-9275388999999996541645--4536899999999974330358611222100222
Q gi|254780502|r 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 (954)
Q Consensus 291 ~~F~Y~Gl~tL~~rYllk~~-~~~~E~pQ~~~mrVA~~la~~e--~~~~~~~~~~Y~~ls~~~~~~atPtl~Nagt~~~ 366 (954)
..|+|+|+++|++|||+|.. |+++|+||+||||||+++|..| .++.+|+++||++||+++|+||||||+||||+.+
T Consensus 1 ~~~~~~~~~~l~~rYl~k~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~~f~patPtl~naGt~~~ 79 (79)
T pfam00317 1 LFLTYLAAKVLEDRYLLKDEDGEILETPQDMFMRVALALAGAELPEDRLELAEEFYDLLSSLKFLPATPTLMNAGTPLG 79 (79)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCC
T ss_conf 9723999999999867727999983579999999999998543320509999999999977884169973116899897
No 39
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=99.64 E-value=1.8e-14 Score=126.19 Aligned_cols=146 Identities=16% Similarity=0.299 Sum_probs=118.0
Q ss_pred CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 4228980599760259899999999985166668---9999999897303789--8889999999999998744187714
Q gi|254780502|r 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV---SSKIVLSETYKNMYDG--LSESDLETALIFSSRTLIEKEPNYA 217 (954)
Q Consensus 143 ~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v---~~~~i~~~~~~~lydg--itt~el~~~li~aA~~Li~~ePdy~ 217 (954)
-.++|+||||+.+|||.+||...|.+|+.++++. ++..+..++...++++ ++.++|++.+.++.-.....+|+|.
T Consensus 3 ~~~~ViKRdG~~e~fd~~KI~~AI~kA~~~~~~~~~~~~~~l~~~V~~~l~~~~~~~ve~IqD~Ve~~Lm~~~~~~~~~~ 82 (770)
T PRK06406 3 MIKEVVKRDGTVVPFEKEKITMAIYKAMLSVKNGSMEDAEKLADKVVDRLKSDERPTVERIQDTVEDVLMTSKINGKDFT 82 (770)
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 76638788996267588999999999998535998877999999999850468999899999999999987687666699
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 67799999999998621003331011044677754788899866557677877775177399999764121011289899
Q gi|254780502|r 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297 (954)
Q Consensus 218 ~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F~Y~G 297 (954)
.||.+.++++.++...... ...+....|+.|+|.+
T Consensus 83 ~vAk~yiLyRe~r~~~r~~---------------------------------------------~~~~~~~~d~~~~~~~ 117 (770)
T PRK06406 83 DVAKSYILYREKRRAIREE---------------------------------------------KELIGVKDDLKLTLNA 117 (770)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------------------------------HHHHCCCCCHHHHHHH
T ss_conf 9999999999999987777---------------------------------------------6764344420210789
Q ss_pred HHHHHHHHHHCC-CCCEEECHHHHHHHHHHHHHCCCC
Q ss_conf 999999762114-892753889999999965416454
Q gi|254780502|r 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET 333 (954)
Q Consensus 298 l~tL~~rYllk~-~~~~~E~pQ~~~mrVA~~la~~e~ 333 (954)
+++|..|||++. ++..+|+||+||+|||++++..|.
T Consensus 118 ~~~l~~ryl~~d~~~~~~e~~~~l~~rva~~~~~~e~ 154 (770)
T PRK06406 118 VKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIIEA 154 (770)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988875510178866788699999999987656776
No 40
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=99.45 E-value=6.2e-13 Score=114.78 Aligned_cols=93 Identities=33% Similarity=0.335 Sum_probs=79.1
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
-.||||||+.++||..||..||+||.-+++... ......++++|+.++.+ .. .-+.||.||+.||..||.
T Consensus 3 ~~vikrDg~~~~fd~~~i~~ai~~a~~~~~~~d-------~~~~~~~~~~i~~~i~~-~~--~~~~i~~iq~~ve~~l~~ 72 (700)
T COG1328 3 PVVIKRDGRVAEFDRNKIINAVRKAAKEIESFD-------IAKALIRATGVDEEVAR-IA--REVEIEEIQLLVEYLLMP 72 (700)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
T ss_conf 615722164256608999999998887642212-------88999999999987766-76--555499998899999975
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12089999988909999999987
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVRAA 131 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R~~ 131 (954)
.++..+||+||-||.+|.++|+.
T Consensus 73 ~~~~~ia~~yieyr~~~d~~r~~ 95 (700)
T COG1328 73 MINKILARAYIEYRFERDRVRET 95 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 04577765416787778899887
No 41
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=98.79 E-value=2.9e-07 Score=72.77 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=61.8
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 64698028973224867999999999987048776432107999999999999999850667898521145489999998
Q gi|254780502|r 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLM 107 (954)
Q Consensus 28 ~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM 107 (954)
.|+||||||+++|||.+||..+|.+|...++..... +.+|+.+|. ....+| ++.++||+++.++.+
T Consensus 2 ~m~ViKRDG~~E~~d~~KI~~~I~~a~~gl~~~~~~--------~~~i~~~v~----~~lyDg--ItT~eIde~li~~aa 67 (822)
T PRK06539 2 SITVVKRDGSKEPYDANKVNAAIEDAASGLDDAITW--------VTQLASELE----ITLFDG--ITTQQLDEAVIQVAL 67 (822)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHH----HHCCCC--CCHHHHHHHHHHHHH
T ss_conf 659995899870107899999999997158745788--------999999999----735799--859999999999999
Q ss_pred HC-----CCHHHHHHHHHHHHHH
Q ss_conf 61-----2089999988909999
Q gi|254780502|r 108 QS-----GHHKITREYVLYREER 125 (954)
Q Consensus 108 ~~-----g~~~VAkaYILYRe~R 125 (954)
.. .|..||.+++|++-.+
T Consensus 68 ~li~~~PdY~~lAaRill~~l~K 90 (822)
T PRK06539 68 QNVKDDPAFDTVAARLLLKSIYK 90 (822)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 84735825999999999999998
No 42
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=98.64 E-value=1.5e-05 Score=59.97 Aligned_cols=248 Identities=22% Similarity=0.287 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCC---------CCCCCCCCHH--HHHHHHHC
Q ss_conf 899999999998828812783311202221246670340467520013665---------4433211125--54068625
Q gi|254780502|r 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS---------SEETAVCNLG--SINLLAHF 611 (954)
Q Consensus 543 ~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~---------~~e~~vCnL~--SiNL~~~v 611 (954)
.|+++.+++++-+.|.|+.+|.|+.... | +.+.+ -|+-..+-++ +.....+||| ||||++..
T Consensus 229 ~d~~~~a~e~~aK~~~p~f~n~~~~~~~-~----~~~~~--McCR~~l~~~~~~~~~~~~~~~~~~gnigvvTINLPRia 301 (555)
T cd01675 229 YDLKELAFECAAKRGYPYFLNFDNSDNV-P----GDVRA--MGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPRIA 301 (555)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCC-C----CCEEC--CEEEECCCHHHHCCCCCCCCCCCCCCEEEEEECCHHHHH
T ss_conf 3899999999983486857998745567-8----76214--322303663342036777756643330346870457999
Q ss_pred CCCCCC----HHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHH------HHHHHHCCCCHHHHHHHHHHC-CCC
Q ss_conf 434479----8885589999999976-------5311210001888886------443310002111188999972-963
Q gi|254780502|r 612 ANNQFD----YDKLASTIRTAVRVLD-------NVIDINCHTIEKAKKS------NHTHRAIGLGLMGFQSALHLL-HIP 673 (954)
Q Consensus 612 ~~~~~D----~~~l~~~v~~avr~LD-------nVId~n~yp~~~~~~~------~~~~R~iGlGv~Glad~L~~~-gi~ 673 (954)
-+..-| |+.|.+...++...|. +..+-+.+|+-..... ..++-.+-||+.||+.++..+ |..
T Consensus 302 ~~s~~d~~~F~~~L~~~l~la~~~L~~r~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~tIG~iGL~Ea~~~l~G~~ 381 (555)
T cd01675 302 YEARGDEEKFFELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTLTIGFIGLNEAAEALTGKG 381 (555)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCC
T ss_conf 98579999999999999999999999999999864445797788676556753123687368314857999999970999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHH
Q ss_conf 2-33788999999999985779997898753117-788766781213876244663005522533454021027289999
Q gi|254780502|r 674 Y-ASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 (954)
Q Consensus 674 Y-~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~ 751 (954)
. +|+|+.+|+.+|+++|...+-+.+. |.| .|..+ .+ |-+.. --.-.+.
T Consensus 382 ~~e~~e~~~f~~~il~~m~~~~~~~~~----e~g~~~~l~-~T-------PAEs~------------------s~rfa~~ 431 (555)
T cd01675 382 IGESEEAREFGIRILEHIRERADEFKE----ETGLLYSVE-AT-------PAESL------------------AYRFAKK 431 (555)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCCEEEE-EC-------CCCHH------------------HHHHHHH
T ss_conf 789988999999999999999999989----869934899-76-------43627------------------8999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCC
Q ss_conf 99984120443011077436877838898847560120345326761366465899989985898689999998519962
Q gi|254780502|r 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 (954)
Q Consensus 752 ~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv 831 (954)
+-++||- ++.|++. .|.|.|.|-
T Consensus 432 D~~~yg~---------------ii~~~~d--~~yYTNS~h---------------------------------------- 454 (555)
T cd01675 432 DRKKYGD---------------IIPGVTD--KPYYTNSFH---------------------------------------- 454 (555)
T ss_pred HHHHCCC---------------CCCCCCC--CCCEEEEEE----------------------------------------
T ss_conf 9987775---------------4669889--998863246----------------------------------------
Q ss_pred CCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC--CCHHHHHHHHHHHHHCCC
Q ss_conf 776448867886505222068899999998520630052320475489--998999999999997298
Q gi|254780502|r 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSGKKLDFIYRQAWLMGL 897 (954)
Q Consensus 832 ~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~--~t~~~i~~~y~~Aw~~Gl 897 (954)
+| + ..++++...|+.++..|++...+--.-+++++ ++.+.+.++...+.+.|+
T Consensus 455 --vp--------v---~~~~~~~eki~~e~~~~~~~~GG~I~hv~l~e~~~n~ea~~~lv~~~~~~~~ 509 (555)
T cd01675 455 --VP--------V---YEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGV 509 (555)
T ss_pred --EC--------C---CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf --06--------8---9999989999744130354276589998779887999999999999998598
No 43
>pfam03477 ATP-cone ATP cone domain.
Probab=98.47 E-value=7.8e-07 Score=69.54 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=68.9
Q ss_pred EEEEECCCCEECCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 289805997602598999999999851666--689999999897303789----88899999999999987441877146
Q gi|254780502|r 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDG----LSESDLETALIFSSRTLIEKEPNYAK 218 (954)
Q Consensus 145 l~V~krDG~~e~~d~~ki~~~i~~ac~gL~--~v~~~~i~~~~~~~lydg----itt~el~~~li~aA~~Li~~ePdy~~ 218 (954)
|.|+||||+.+|||.+||...|.+||.+.. ..+...|+.++...|+++ |++++|++++..+.. .++.|.+
T Consensus 1 ~~ViKRdG~~~~Fd~~KI~~ai~~A~~~~~~~~~~~~~i~~~V~~~l~~~~~~~i~~e~Iqd~Ve~~L~----~~~~~~~ 76 (89)
T pfam03477 1 MKVIKRDGRREPFDREKIRRAIEKACEKREVDPDDAEEIAEEVEKELEDGGDREISTEEIQDLVEKTLA----EHPDYAV 76 (89)
T ss_pred CEEEECCCCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----CCCHHHH
T ss_conf 968938997746408999999999987226768889999999999999838987679999999999998----1687999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 779999999999
Q gi|254780502|r 219 VTARFLLEKLRR 230 (954)
Q Consensus 219 vAaRlll~~l~k 230 (954)
++++++..+.++
T Consensus 77 a~~yi~yR~~r~ 88 (89)
T pfam03477 77 ARAYILYRNLRK 88 (89)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999852
No 44
>LOAD_ATP_cone consensus
Probab=98.44 E-value=2.2e-06 Score=66.29 Aligned_cols=83 Identities=18% Similarity=0.369 Sum_probs=67.8
Q ss_pred EEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 28980599760259899999999985166668999999989730----37898889999999999998744187714677
Q gi|254780502|r 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN----MYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220 (954)
Q Consensus 145 l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~----lydgitt~el~~~li~aA~~Li~~ePdy~~vA 220 (954)
|.|+||||+.+|||.+||...|..||.+++.-+...++.++... ..++|++++|+++...+...+ +|..+|
T Consensus 1 l~ViKRdG~~~~F~~~KI~~ai~~A~~~~~~~~~~~~~~~v~~~l~~~~~~~i~veeIqd~Ve~~L~~~-----~~~~vA 75 (89)
T LOAD_ATP_cone 1 LYVVKRDGRTEPFSRGKIARALTRACEGTPEDDAYAIAQEVEAELRKQGRRGITTEEIQELVEEALAKL-----DYEEVA 75 (89)
T ss_pred CEEEECCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-----CCHHHH
T ss_conf 979957993731109999999999986599768999999999999985689988999999999999968-----949999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999986
Q gi|254780502|r 221 ARFLLEKLRREV 232 (954)
Q Consensus 221 aRlll~~l~kev 232 (954)
.+..+++.++++
T Consensus 76 ~~yi~YR~~r~~ 87 (89)
T LOAD_ATP_cone 76 ARYAVYRLFKDI 87 (89)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999987602
No 45
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=98.33 E-value=9e-06 Score=61.68 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=55.2
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-HHHHH--
Q ss_conf 469802897322486799999999998704877643210799999999999999985066789852114548-99999--
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQD-QVECS-- 105 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD-~VE~~-- 105 (954)
|+|+||||++++||.+||..+|.+|.-..++ .. ..+++.+ ...++.+| ++.++||| ++|-+
T Consensus 1 m~ViKRdG~~e~~d~~KI~~~i~~a~~gl~~-v~---------~~~i~~~----~~~~lydg--itT~eI~~~li~ta~~ 64 (788)
T PRK08447 1 ITVIKRNGRTEPLDISKIQKYTSDAVEGLEG-VS---------QSELEVD----AKIQFRDK--ITTEEIQQTLIKTAVD 64 (788)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHCCCCC-CC---------HHHHHHH----HHHCCCCC--CCHHHHHHHHHHHHHH
T ss_conf 9589389988120799999999999678988-98---------8999999----87456799--8499999999999998
Q ss_pred HHH---CCCHHHHHHHHHHHH
Q ss_conf 986---120899999889099
Q gi|254780502|r 106 LMQ---SGHHKITREYVLYRE 123 (954)
Q Consensus 106 LM~---~g~~~VAkaYILYRe 123 (954)
||. -.|..||.+..+++=
T Consensus 65 ~is~~~PdY~~lAaRl~l~~l 85 (788)
T PRK08447 65 KIDIDTPNWTFVAARLFLYDL 85 (788)
T ss_pred HCCCCCCCHHHHHHHHHHHHH
T ss_conf 577568549999999999999
No 46
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=97.99 E-value=0.00029 Score=50.47 Aligned_cols=299 Identities=25% Similarity=0.400 Sum_probs=217.9
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
-+|+||||++||||.++|.+||.+|++.| +.|+.+.++.+...|+.++ +...+|.++|||+|||+||+.|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (1748)
T PRK08332 4 EKVMKRDGRIVPFDEERIRWAIQRAMLEV-------GIRDEKKLDEVVKRIVQRI-NELYDGKIPHIENIQDIVELELMR 75 (1748)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 76763278535670899999999999885-------3530676899999999998-887458886324378899999987
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 12089999988909999999987642100002344228980599760259899999999985166668999999989730
Q gi|254780502|r 109 SGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~ 188 (954)
+|.|+|||+|||||.+.+++|++++++.+.+++ ++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~--------- 114 (1748)
T PRK08332 76 AGLFDVAKAYILYRKKKAEIREEKKKILNKDEL--------------------------------DEIDKR--------- 114 (1748)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--------------------------------HHHHHH---------
T ss_conf 315787778876455567888988740473555--------------------------------667654---------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37898889999999999998744187714677999999999986210033310110446777547888998665576778
Q gi|254780502|r 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 (954)
Q Consensus 189 lydgitt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~ 268 (954)
..++.+.++++|+||..+..-...++|-|+.++.- +....+....-...+..+-|.+.++ ..+.
T Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 178 (1748)
T PRK08332 115 -------FSINALRVLASRYLIKDEKGEIIESPRELFERVAI--LAVIPDILYDERVFDKNGGHEQDLK-------AIER 178 (1748)
T ss_pred -------CCHHHHHHHHHHHEECCCCCCHHCCHHHHHHHHHH--HHHCCHHHCCHHEECCCCCCHHHHH-------HHHH
T ss_conf -------03788999877751114577700086999888788--7515134301010046797067689-------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 77775177399999764121011289899999999762114892753889999999965416454536899999999974
Q gi|254780502|r 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 (954)
Q Consensus 269 i~~~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~~~~~~~~~~Y~~ls~ 348 (954)
+++++.+||-..-... +.++-.-+..|.+-|---.+...+.+|-.-|+. |---...+++++.+.++|.+|..
T Consensus 179 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 250 (1748)
T PRK08332 179 YLEHFDEFDGKFSIGK------FKLNKWHFERLLNLYKELAEKGKMKLPIDEFLA--MLEKGAFDEYEDEIEEYFRLMTG 250 (1748)
T ss_pred HHHHHHHCCCCEEECE------EEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH--HHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 9987651277022341------530168899999999999862785586899999--98636731567899999998608
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3303586112221002222321102547664135899998999998510544
Q gi|254780502|r 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 (954)
Q Consensus 349 ~~~~~atPtl~Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGi 400 (954)
+-|+|+||.|.|+|.|.+.||+||+.+++|+|++|+++.+++|+|.|.|||.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1748)
T PRK08332 251 QIFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKAGGGC 302 (1748)
T ss_pred CCCCCCCHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5215898677428985320103679862113999998766789987606874
No 47
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=97.53 E-value=0.00062 Score=48.03 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=52.9
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH--
Q ss_conf 164698028973224867999999999987048776432107999999999999999850667898521145489999--
Q gi|254780502|r 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVEC-- 104 (954)
Q Consensus 27 ~~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~-- 104 (954)
..|.|+||||++++||.+||..+|..|--..++ - + +.+++.++. .++.+| ++-++||+..-+
T Consensus 3 ~~m~ViKRdG~~E~~~~~KI~~~i~~a~~gL~~---v-~------~~~i~~~~~----~~lyDG--itT~eid~~li~~a 66 (761)
T PRK09103 3 QNLLVTKRDGSTERINLDKIHRVITWAAEGLHN---V-S------VSQVELRSH----IQFYDG--IKTSDIHETIIKAA 66 (761)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCC---C-C------HHHHHHHHH----HCCCCC--CCHHHHHHHHHHHH
T ss_conf 872899389987157899999999999578877---9-9------899999998----535799--85999999999999
Q ss_pred -HHH--HC-CCHHHHHHHHHHHH
Q ss_conf -998--61-20899999889099
Q gi|254780502|r 105 -SLM--QS-GHHKITREYVLYRE 123 (954)
Q Consensus 105 -~LM--~~-g~~~VAkaYILYRe 123 (954)
.|| ++ .|..||-+-.++.-
T Consensus 67 a~lis~~~Pdy~~lAaRl~~~~l 89 (761)
T PRK09103 67 ADLISRDAPDYQYLAARLAIFHL 89 (761)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99845558569999999999999
No 48
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.41 E-value=0.015 Score=37.80 Aligned_cols=197 Identities=18% Similarity=0.164 Sum_probs=123.9
Q ss_pred CCCCCHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 32111255406862543----4479888558999999997-------653112100018888864433100021111889
Q gi|254780502|r 597 TAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVL-------DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 (954)
Q Consensus 597 ~~vCnL~SiNL~~~v~~----~~~D~~~l~~~v~~avr~L-------DnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad 665 (954)
+++++.-.|||++..-+ ..| |+.|.+.+.++-..| ...++-+.||.-+....+.+..-.=||+-|++.
T Consensus 348 TGSigVVTINLpRla~~a~~e~ef-~~~L~~~l~la~~sLe~kRkil~~~~~~Gl~P~~~~~l~~l~~hFsTIGi~GmnE 426 (625)
T PRK08271 348 IGSINVITINMPRIALEGRDRKKF-FEILREEVKKIHKYLVAYRKIMEERIAAGMLPVYDAGFITLDKQFLTIGINGMWE 426 (625)
T ss_pred CCCCCEEEECHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 476224996347888882898999-9999999999999999999999999877995367867998862276630405999
Q ss_pred HHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHH
Q ss_conf 9997296323-37889999999999857799978987531177-887667812138762446630055225334540210
Q gi|254780502|r 666 ALHLLHIPYA-SPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 (954)
Q Consensus 666 ~L~~~gi~Y~-S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~-~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~ 743 (954)
+...+|...+ ++|+.+|+.++.++|...+.+.+ +|.|- |.. +.+ |-+. ..
T Consensus 427 a~~~~g~~~~~~~eg~~fa~~vL~~mr~~~~~~q----eetG~~yNl-EaT-------PAEg----------ts------ 478 (625)
T PRK08271 427 AAEFQGLTVGYNEEGEAFVQEVLKVIYEANEEAS----KEYGFTFNT-EFV-------PAEN----------LA------ 478 (625)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCE-EEC-------CCCC----------HH------
T ss_conf 9997599878998999999999999999999999----996986524-445-------5561----------45------
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHH
Q ss_conf 27289999999841204430110774368778388988475601203453267613664658999899858986899999
Q gi|254780502|r 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 (954)
Q Consensus 744 ~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~ 823 (954)
-.--+.+-++||.- .+|.+.+. |
T Consensus 479 --~RfAk~Dkk~f~~~----------------------~~py~tys-------------~-------------------- 501 (625)
T PRK08271 479 --VTLAKKDRKDYFVE----------------------RDCYNSYS-------------N-------------------- 501 (625)
T ss_pred --HHHHHHHHHHCCCC----------------------CCCCCCCC-------------C--------------------
T ss_conf --77899989977987----------------------67675676-------------6--------------------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC-C-CHHHHHHHHHHHHHCCCC
Q ss_conf 98519962776448867886505222068899999998520630052320475489-9-989999999999972986
Q gi|254780502|r 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P-SGKKLDFIYRQAWLMGLK 898 (954)
Q Consensus 824 i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~-~-t~~~i~~~y~~Aw~~GlK 898 (954)
|.+| .-.++|+.+-++.++..|++.+.+--+-+||.+ . +.+.+.++...+-+.||=
T Consensus 502 --------s~lp-----------~~~~~d~fe~l~~q~~lq~~yTGGtVlHi~LgE~~~~~ea~~~lvk~~~~~~lp 559 (625)
T PRK08271 502 --------QYVP-----------LDANTDALDRFKLHGKLDKKVSGGSILHLNLDESLKSEEGYLKLVNIAAKTGVN 559 (625)
T ss_pred --------CCCC-----------CCCCCCHHHHHHHHCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf --------5378-----------889989999997524642224141899976688889999999999999847997
No 49
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=97.40 E-value=0.0011 Score=46.27 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=47.8
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 16469802897322486799999999998704877643210799999999999999985066789852114548999999
Q gi|254780502|r 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSL 106 (954)
Q Consensus 27 ~~m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~L 106 (954)
..+.||||||+.++||.+||...|.+|+-- -+.. .+.++.+.+.|...+..... .-|+=.+|=++|=..|
T Consensus 47 ~~l~VvKrdg~re~Fdr~Kl~~gi~~A~~K--Rpv~------~~~ie~~v~~Ie~~l~~~~~--~EI~S~~IGe~Vm~~L 116 (149)
T PRK00464 47 VPPLVIKKDGRREPFDREKLLRGLLRACEK--RPVS------SEQIEAAVSRIERQLRASGE--REVPSKEIGELVMEEL 116 (149)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHH
T ss_conf 265799459987777799999999999638--9989------99999999999999998388--8755999999999988
Q ss_pred HH
Q ss_conf 86
Q gi|254780502|r 107 MQ 108 (954)
Q Consensus 107 M~ 108 (954)
-.
T Consensus 117 k~ 118 (149)
T PRK00464 117 KK 118 (149)
T ss_pred HH
T ss_conf 62
No 50
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.10 E-value=0.031 Score=35.47 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=113.2
Q ss_pred CCHH--HHHHHHHCC--CCCCC--HHHHHHHHHHHHHHHHH-------HCC--CCCHHHHHHHHH-HHHHHHCCCCHHHH
Q ss_conf 1125--540686254--34479--88855899999999765-------311--210001888886-44331000211118
Q gi|254780502|r 600 CNLG--SINLLAHFA--NNQFD--YDKLASTIRTAVRVLDN-------VID--INCHTIEKAKKS-NHTHRAIGLGLMGF 663 (954)
Q Consensus 600 CnL~--SiNL~~~v~--~~~~D--~~~l~~~v~~avr~LDn-------VId--~n~yp~~~~~~~-~~~~R~iGlGv~Gl 663 (954)
.||| ||||++.-- .++.| |+.|.+...++-+.|+- .+. -..||.-..... -..+.-..||+-||
T Consensus 332 GnigVVTINLPRia~~akgd~~~F~~~Ld~~lela~~aL~~~r~r~~~~~~~~~~l~p~~~~~l~~~~~~~f~TIG~iGl 411 (623)
T PRK08579 332 GSVGVTTVNLPRIALKARGDDDRFWELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEYLPEFPSSHFNTIGIIGL 411 (623)
T ss_pred CCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 87324971479999883898999999999999999999999999999998634310458999856666437677447229
Q ss_pred HHHHHHC-CC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHCCCCCHHHHHCCHHHC
Q ss_conf 8999972-96--------3233788999999999985779997898753117-788766781213876244663005522
Q gi|254780502|r 664 QSALHLL-HI--------PYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVR 733 (954)
Q Consensus 664 ad~L~~~-gi--------~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS~~~~G~~~~d~~~~~~~~~ 733 (954)
+.++..+ |- .=++++|.+|+.+|.++|...+-+-+. |-| .|..+ ++ |-++.
T Consensus 412 ~E~~~~~~G~~~~~~~~~~~~~~~a~~~~~~vl~~mr~~~~~~~e----etg~~fsl~-aT-------PAEsl------- 472 (623)
T PRK08579 412 PEAAAIYLNDPELWTEGSRRDWLEAAELMKKMVEFAVEKAREWMK----ETGTPWNVE-EV-------PGESA------- 472 (623)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCEEE-EC-------CCCHH-------
T ss_conf 999999719985545666302599999999999999999999999----879851256-57-------65326-------
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC-CCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf 53345402102728999999984120443011077436877838-89884756012034532676136646589998998
Q gi|254780502|r 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 (954)
Q Consensus 734 ~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g-~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~ 812 (954)
--.=.+.+-+++|.- .+ ++.|-.|+|.|.++
T Consensus 473 -----------s~RFak~D~k~fg~i----------------~~~~~~~d~~yYTNS~~--------------------- 504 (623)
T PRK08579 473 -----------AAKLAIKDLKLFPEL----------------REYLPDPENPIYSTSVA--------------------- 504 (623)
T ss_pred -----------HHHHHHHHHHHCCCC----------------CCCCCCCCCCEEECCCC---------------------
T ss_conf -----------789999999976653----------------33567899870358735---------------------
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECC-CCCHHHHHHHHHH
Q ss_conf 589868999999851996277644886788650522206889999999852063005232047548-9998999999999
Q gi|254780502|r 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 (954)
Q Consensus 813 ~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~-~~t~~~i~~~y~~ 891 (954)
| ++ .++++..-|+.++..|+....+-=.-+++. .++.+-+.++...
T Consensus 505 ----------------------P--------v~---~~i~~feki~~E~~~~~~~~GG~I~hi~l~E~~n~~a~~~lv~~ 551 (623)
T PRK08579 505 ----------------------P--------YY---GPLELWDRIRIEEKVQQEFTGGVMMHIFLGEEPDPEALAKLTKK 551 (623)
T ss_pred ----------------------C--------CC---CCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf ----------------------7--------89---99998999962142145126647998415888999999999999
Q ss_pred HHHCCC
Q ss_conf 997298
Q gi|254780502|r 892 AWLMGL 897 (954)
Q Consensus 892 Aw~~Gl 897 (954)
.++.++
T Consensus 552 ~~~~~i 557 (623)
T PRK08579 552 IMKTKL 557 (623)
T ss_pred HHHCCC
T ss_conf 996499
No 51
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase; InterPro: IPR012833 This entry is found in the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centred radical , a C-terminal zinc binding site , and a set of conserved active site cysteines and asparagines . This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (IPR012837 from INTERPRO). Together the two form an alpha-2/beta-2 heterodimer.; GO: 0008998 ribonucleoside-triphosphate reductase activity, 0016491 oxidoreductase activity.
Probab=97.04 E-value=0.014 Score=37.90 Aligned_cols=264 Identities=20% Similarity=0.236 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEE---ECHHHCCC---C-CC-CCCEEE----ECCCCCCCC------CC--CCCCCCCCCCH
Q ss_conf 899999999998828812783---31120222---1-24-667034----046752001------36--65443321112
Q gi|254780502|r 543 VALWRKMLTMLFETGHPWITF---KDPCNIRS---P-QQ-HVGVVH----SSNLCTEIT------LN--SSSEETAVCNL 602 (954)
Q Consensus 543 ~~l~~~i~~~~~etG~P~i~f---~D~~N~~~---p-~~-~~g~I~----~sNlC~Ei~------l~--~~~~e~~vCnL 602 (954)
.||+.++++++-+.|-||++| .|+.-... . .. ....|. -++|-..+. +. -.+....-=||
T Consensus 249 yDl~~~a~e~~aK~~~Pyf~ntnv~~~~~~~~dW~~~~~~~~~~v~~MGCR~~L~~~~~~~~~y~ld~~~~~~~~grgN~ 328 (655)
T TIGR02487 249 YDLFELAFECAAKRGYPYFLNTNVLDAEDNVKDWGEDVKKYGEEVAPMGCRTFLSPNENKRKTYELDEDGEESSIGRGNI 328 (655)
T ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89999999987764160001000116401034222345525542267511023657523770020488745145554541
Q ss_pred H--HHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHH-HH-------CCCCCHH---------------HHHHHHH---
Q ss_conf 5--54068625434-----4798885589999999976-53-------1121000---------------1888886---
Q gi|254780502|r 603 G--SINLLAHFANN-----QFDYDKLASTIRTAVRVLD-NV-------IDINCHT---------------IEKAKKS--- 649 (954)
Q Consensus 603 ~--SiNL~~~v~~~-----~~D~~~l~~~v~~avr~LD-nV-------Id~n~yp---------------~~~~~~~--- 649 (954)
| ||||++.--.. .| |++|++...++...|- .= +--..++ -+..+..
T Consensus 329 g~~siNLPRiA~~~~~d~~~F-fe~L~~~l~i~~~~l~W~r~~~~~~~~~~~~p~~~~~~~~~G~e~~~~~~~~~~~~~~ 407 (655)
T TIGR02487 329 GVTSINLPRIAYKSRGDEEEF-FEELDEYLEIAKEALEWIRREYLKKLLAKDLPILYSQGVWKGGEKLKPNDSVKEILKV 407 (655)
T ss_pred EEEEHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 001153478875238766789-9999999999999999988999964676306411220322453026864330100010
Q ss_pred HHHHHHCCCCHHHHHHHHHHC-CC--CCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
Q ss_conf 443310002111188999972-96--32337------8899999999998577999789875311778876678121387
Q gi|254780502|r 650 NHTHRAIGLGLMGFQSALHLL-HI--PYASP------EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 (954)
Q Consensus 650 ~~~~R~iGlGv~Glad~L~~~-gi--~Y~S~------ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~ 720 (954)
+...-.+.||+.|||.++..+ |- -++++ ||++|+-+|.+.|+..+.+-.-+--- .|..+.
T Consensus 408 ~~~~~t~siGfiGl~E~~~~l~G~e~~~e~~~rrDWi~a~~l~~~~~~~~~~~~~~~~~e~~~---~~sv~~-------- 476 (655)
T TIGR02487 408 DFGSHTLSIGFIGLNEALVALTGKEHLHEEENRRDWIEARELAIKILEFIRDKVDELKKETGL---NYSVYA-------- 476 (655)
T ss_pred CCCCEEEEEEHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CEEEEE--------
T ss_conf 056116874036789999997199832247752469999999999999999999999986197---168996--------
Q ss_pred CCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHH-CCCCC----CCC--CCHHEEEE
Q ss_conf 62446630055225334540210272899999-998412044301107743687783-88988----475--60120345
Q gi|254780502|r 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANIC-GVSQS----IDP--SYQNLYVK 792 (954)
Q Consensus 721 ~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~-i~~~G~RNs~l~aiAPT~t~S~i~-g~s~g----IEP--~~a~~y~r 792 (954)
-|-+ ++-=.-.+.+ .++||. - . .|- |++.- =.| +|.|+|=
T Consensus 477 TPAE------------------sl~~Rfa~~Dl~~~fg~-a---------~---~i~kG~~d~~nd~~~~PiYYtNS~H- 524 (655)
T TIGR02487 477 TPAE------------------SLCGRFAKKDLREEFGE-A---------A---KIPKGVTDKLNDLESPPIYYTNSFH- 524 (655)
T ss_pred CCCH------------------HHHHHHHHHHHHHHCCC-C---------E---EEECCCCCCCCCCCCCCEEEECCEE-
T ss_conf 6842------------------07899999876764664-1---------0---5410336666666788878715555-
Q ss_pred ECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEE
Q ss_conf 32676136646589998998589868999999851996277644886788650522206889999999852063005232
Q gi|254780502|r 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 (954)
Q Consensus 793 ~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS 872 (954)
+ -.-.+|++...|+..|..|+....|-=
T Consensus 525 ---------~-------------------------------------------pv~~~~~~~eki~~E~~f~~l~~GG~I 552 (655)
T TIGR02487 525 ---------V-------------------------------------------PVYEDVNLIEKIDIEAPFHPLTNGGHI 552 (655)
T ss_pred ---------E-------------------------------------------CCCCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf ---------4-------------------------------------------777754779887453430321389758
Q ss_pred EEEECC--CCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 047548--999899999999999729867979
Q gi|254780502|r 873 LNLYLD--EPSGKKLDFIYRQAWLMGLKTTYY 902 (954)
Q Consensus 873 ~tl~~~--~~t~~~i~~~y~~Aw~~GlKt~yy 902 (954)
.=++++ ..+.+-+.++-.++.+.+--+-|+
T Consensus 553 ~yi~~~~~~~d~~~l~~i~~~~~~~~t~i~Y~ 584 (655)
T TIGR02487 553 TYIELDEAAKDPEALKDIIKKAMKNGTNIGYF 584 (655)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99874875467378999999999738852226
No 52
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.068 Score=32.90 Aligned_cols=243 Identities=16% Similarity=0.121 Sum_probs=135.2
Q ss_pred HCCCEEEEECHHHCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCCHH--HHHHHHHCCCCCCC----HHHHHHHHHH
Q ss_conf 2881278331120222--12466703404675200136654433211125--54068625434479----8885589999
Q gi|254780502|r 556 TGHPWITFKDPCNIRS--PQQHVGVVHSSNLCTEITLNSSSEETAVCNLG--SINLLAHFANNQFD----YDKLASTIRT 627 (954)
Q Consensus 556 tG~P~i~f~D~~N~~~--p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~--SiNL~~~v~~~~~D----~~~l~~~v~~ 627 (954)
.|.|+.....+.-..- +..-.-+=-.|+|++....+-..+....+||+ +|||++.--...-| |+.|.+.+.+
T Consensus 357 ~~~~~~~n~l~~D~~~~~g~~~~~MgCR~~l~~~~~~~~~~~~~~~gn~~vvTlNLPRiA~~a~gD~~kf~e~l~~~lei 436 (700)
T COG1328 357 FGKRYFPNMLNYDWVVLTGTFKNAMGCRTFLSGNETGDGEGDTLGTGNLGVVTLNLPRIALEAKGDDDKFFEILHERLEI 436 (700)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCEECCHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 07765411102323202788503122000125333577564566536524699846378888467766689999999999
Q ss_pred HHHHHHHHCC-------CC--CHHHH-----H-----HHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCHHHHHHHHHH
Q ss_conf 9999765311-------21--00018-----8-----888644331000211118899997296--32337889999999
Q gi|254780502|r 628 AVRVLDNVID-------IN--CHTIE-----K-----AKKSNHTHRAIGLGLMGFQSALHLLHI--PYASPEAVEIADES 686 (954)
Q Consensus 628 avr~LDnVId-------~n--~yp~~-----~-----~~~~~~~~R~iGlGv~Glad~L~~~gi--~Y~S~ea~~~~~~i 686 (954)
+...|.-... -+ +.+.. . ........-.+.+|+.|++.++..+.= -++|+|+..|...+
T Consensus 437 ~keaL~~r~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~s~g~igl~E~l~~~~g~~~~~~~ea~~~~~~i 516 (700)
T COG1328 437 AKEALLIRRERLKELIAKNALYMVGALGGRLNQEFDGSTIFRNGRATISLGFIGLNEMLKYLTGEHLHESEEAKKFGIKI 516 (700)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999998753345201245423345564342651136605887534649999985487744689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99985779997898753117788766781213876244663005522533454021027289999999841204430110
Q gi|254780502|r 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 (954)
Q Consensus 687 ~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~ai 766 (954)
.+.|+.++.+-+- |-| -.|+-+.-|-+... =.=-|.+.+++|---
T Consensus 517 v~~~~~~~~~~~~----e~g-------~~~sv~~tPaEs~a------------------~RFar~D~~~fge~~------ 561 (700)
T COG1328 517 VEYIREYADKWKK----ETG-------LRWSVYQTPAESLA------------------DRFARLDIFEFGEYK------ 561 (700)
T ss_pred HHHHHHHHHHHHH----HCC-------CCEEEEECCCCHHH------------------HHHHHHHHHHCCCCC------
T ss_conf 9999999998777----319-------62146525551477------------------999999899768531------
Q ss_pred CCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCC
Q ss_conf 77436877838898847560120345326761366465899989985898689999998519962776448867886505
Q gi|254780502|r 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 (954)
Q Consensus 767 APT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ 846 (954)
.+-|++. -|+|.|.|...+.
T Consensus 562 -------~i~~~~d--k~yYtNS~h~pv~--------------------------------------------------- 581 (700)
T COG1328 562 -------VVRGDTD--KPYYTNSFHVPVD--------------------------------------------------- 581 (700)
T ss_pred -------CCCCCCC--CCEECCCEEEECC---------------------------------------------------
T ss_conf -------0278888--8854487763057---------------------------------------------------
Q ss_pred CHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCCC--CHHHHHHHHHHHHHC
Q ss_conf 2220688999999985206300523204754899--989999999999972
Q gi|254780502|r 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--SGKKLDFIYRQAWLM 895 (954)
Q Consensus 847 ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~~--t~~~i~~~y~~Aw~~ 895 (954)
.++++..-|+..+..|+....+-=+-+++++. +.+-+.++-.+++..
T Consensus 582 --~~~~~~eki~iE~~~~~~~~GG~I~~~~l~e~~~~~eal~~l~k~~~~~ 630 (700)
T COG1328 582 --ADVTLGEKIRIEEKYHPLCNGGHIMHIELGESQADPEALMDLTKYIYKT 630 (700)
T ss_pred --CCCCHHHHEEHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf --8898667002010267556687799986477679989999999999725
No 53
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=96.60 E-value=0.021 Score=36.66 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=42.9
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 46980289732248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
+.|||+||+-+|||.+|+.+-+.+|-.- -.. + .+.++.+...|..++..... .-|+=++|-.+|=..|.+
T Consensus 49 ~~VvKkdg~Re~F~r~Kl~~gl~~A~~K---RpV--s---~e~ie~~v~~ie~~Lr~~g~--~EV~S~~IG~~VM~~Lk~ 118 (156)
T COG1327 49 LIVVKKDGRREPFDREKLRRGLIRACEK---RPV--S---SEQIEEAVSHIERQLRSSGE--REVPSKEIGELVMEELKK 118 (156)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHC---CCC--C---HHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 0588758970878889999899999815---999--9---99999999999999986688--767889999999999971
Q ss_pred CCC
Q ss_conf 120
Q gi|254780502|r 109 SGH 111 (954)
Q Consensus 109 ~g~ 111 (954)
-..
T Consensus 119 lD~ 121 (156)
T COG1327 119 LDE 121 (156)
T ss_pred CCH
T ss_conf 050
No 54
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.59 E-value=0.034 Score=35.16 Aligned_cols=245 Identities=16% Similarity=0.155 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCC------CCCCCCCHH--HHHHHHHCCCC
Q ss_conf 8999999999988288127833112022212466703404675200136654------433211125--54068625434
Q gi|254780502|r 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLG--SINLLAHFANN 614 (954)
Q Consensus 543 ~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~------~e~~vCnL~--SiNL~~~v~~~ 614 (954)
-||....+++.-+.+.|++.|.|..-... |...++ -|+--.|-.+. ...+-+||| ||||++.--..
T Consensus 348 ydl~~la~~~taKr~~P~f~~~~~~~~~~-----g~~~~~-MgCRs~L~~~~~~~g~~~~~Gr~nigVVTINLPRia~~a 421 (711)
T PRK09263 348 YDIKQLALECATKRMYPDILNYDKVVEVT-----GSFKTP-MGCRSFLGGWKDENGEEVHDGRNNLGVVSLNLPRIALEA 421 (711)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHCCHHHHC-----CCCCCC-CCCCCCCCHHHCCCCCEEECCCCCEEEEEECHHHHHHHH
T ss_conf 46999999998623778556520345534-----776788-862144651121677500003551245880608999985
Q ss_pred CCC----HHHHHHHHHHHHHHHHHHCC------CCCHHH--HHH------------HH-HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 479----88855899999999765311------210001--888------------88-644331000211118899997
Q gi|254780502|r 615 QFD----YDKLASTIRTAVRVLDNVID------INCHTI--EKA------------KK-SNHTHRAIGLGLMGFQSALHL 669 (954)
Q Consensus 615 ~~D----~~~l~~~v~~avr~LDnVId------~n~yp~--~~~------------~~-~~~~~R~iGlGv~Glad~L~~ 669 (954)
.=| |+.|.+...++.+.|.--.+ ...+|+ ++- .. -+..+-.|.||+.||+.++..
T Consensus 422 ~gd~~~F~~~Ld~~mdla~~~L~~r~~~l~~~~~~~~p~Ly~~g~~~~rl~~~~~~~~~~~~~~sTisiG~iGLnEa~~~ 501 (711)
T PRK09263 422 KGDEDKFWELLDERLALAKDALMTRIERLEGAKPRVAPILYMEGAFGVRLKADDDVDELFKNGRATISLGYIGLYETINA 501 (711)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHH
T ss_conf 79899999999999999999999999999844223684022045300126876517888617870584307459999999
Q ss_pred C-CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCH
Q ss_conf 2-9632-33788999999999985779997898753117-7887667812138762446630055225334540210272
Q gi|254780502|r 670 L-HIPY-ASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 (954)
Q Consensus 670 ~-gi~Y-~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW 746 (954)
+ |-.. +|+||.+|+-+|+++|...+-+.+ +|.| .|..+ ++ |-++. --
T Consensus 502 l~G~~~~~~~e~~~fa~~Il~~mr~~~~~~~----eetg~~y~le-aT-------PAEs~------------------s~ 551 (711)
T PRK09263 502 LYGGDWEVNEEARAFALAIVKRMKDAVDQWK----KETGYGFSLY-ST-------PSESL------------------CD 551 (711)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCEEEE-EC-------CHHHH------------------HH
T ss_conf 5399878898899999999999999999999----9979950267-56-------30057------------------89
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89999999841204430110774368778388988475601203453267613664658999899858986899999985
Q gi|254780502|r 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 (954)
Q Consensus 747 ~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~ 826 (954)
.-.+.+-++||. |.|+|. .|.|.|+|-
T Consensus 552 Rfa~~D~~~fg~----------------I~~~td--~~YYTNS~H----------------------------------- 578 (711)
T PRK09263 552 RFCRLDTEKFGV----------------VKGITD--KGYYTNSFH----------------------------------- 578 (711)
T ss_pred HHHHHHHHHCCC----------------CCCCCC--CCCCCCCCC-----------------------------------
T ss_conf 999998997698----------------888788--882448715-----------------------------------
Q ss_pred CCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC--CCHHHHHHHHHHHHH
Q ss_conf 19962776448867886505222068899999998520630052320475489--998999999999997
Q gi|254780502|r 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSGKKLDFIYRQAWL 894 (954)
Q Consensus 827 ~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~--~t~~~i~~~y~~Aw~ 894 (954)
+ -...++++..-|+.++..|++...+-=.-+.+++ .+.+-+..+..+|+.
T Consensus 579 -------l-----------pV~~~~~~feki~~E~~~~~~~tGG~I~y~e~~~~~~n~~al~~~~~~~~~ 630 (711)
T PRK09263 579 -------Y-----------DVRKKVNPFEKLDFEAPYPPYASGGFIHYCEYPNLQHNLKALEAVWDYSYD 630 (711)
T ss_pred -------C-----------CCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf -------7-----------899999989998620434301157169998557653599999999999985
No 55
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.40 E-value=0.015 Score=37.77 Aligned_cols=317 Identities=17% Similarity=0.200 Sum_probs=167.3
Q ss_pred HHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCC---CCEEEEECCCCCCCCCCC
Q ss_conf 74046667724789835678899997302578730233202320203487999985212---874787101144410013
Q gi|254780502|r 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN---AGWTLFSPDEVSDLHDLY 514 (954)
Q Consensus 438 v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~---~~w~Lf~P~~~~~L~d~~ 514 (954)
+||--.|+|.++.+-.+.= |.|..+ -+-.|...|++...++ +. +...|.-+..+.+-.
T Consensus 278 lNt~~sr~G~QtPFt~i~~-------------g~d~~~-----e~~~i~~a~l~v~~eG~~~g~-~~~FP~~i~~i~~~~ 338 (703)
T PRK07111 278 LNTMHSRAGSQVPFSSINY-------------GTDTSK-----EGRLVIENLLKATEKGLGKGE-TPIFPIQIFKVKEGV 338 (703)
T ss_pred HCCCCCCCCCCCCCEEEEC-------------CCCCCH-----HHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCC
T ss_conf 2135577888477157642-------------876788-----999999999999984156999-887870147724898
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHH-HCC-CCCCCCCEEEECCCCCCCCC--
Q ss_conf 44378998778752104886057786688999999999988288127833112-022-21246670340467520013--
Q gi|254780502|r 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC-NIR-SPQQHVGVVHSSNLCTEITL-- 590 (954)
Q Consensus 515 g~~fe~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~-N~~-~p~~~~g~I~~sNlC~Ei~l-- 590 (954)
.-.+ .-|-.||+...+++.-+.|.|++.|.|.- |+. ....+.+...++- |+---+
T Consensus 339 n~~~--------------------~dpn~dl~~la~~~taK~~~P~f~~~d~~~~~~~~~~~~~~~~~~~M-gCR~rl~~ 397 (703)
T PRK07111 339 NYEE--------------------GDPNYDLFKLACRVAAKRLFPNFMFLDAPFNKEYYDKGRPETEVATM-GCRTRVMS 397 (703)
T ss_pred CCCC--------------------CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCCCCCCC-CHHHHHCC
T ss_conf 6899--------------------99627999999999887568867805764113303567788777778-40302113
Q ss_pred CCCC--CCCCCCCHH--HHHHHHHCC--CCCCC--HHHHHHHHHHHHHHHH-------HHCCCCCHHHH-----------
Q ss_conf 6654--433211125--540686254--34479--8885589999999976-------53112100018-----------
Q gi|254780502|r 591 NSSS--EETAVCNLG--SINLLAHFA--NNQFD--YDKLASTIRTAVRVLD-------NVIDINCHTIE----------- 644 (954)
Q Consensus 591 ~~~~--~e~~vCnL~--SiNL~~~v~--~~~~D--~~~l~~~v~~avr~LD-------nVId~n~yp~~----------- 644 (954)
+-.. .-.+.+|+| ||||++.-- .++.| |+.|.+...++.+.|- +.. ...+|.-
T Consensus 398 ~~~g~~~~~GrgnigVVTiNLPRia~~a~gd~~~F~~~Ld~~l~l~~~~L~~r~~~~~~~~-~~~~P~l~~~g~~~~~~~ 476 (703)
T PRK07111 398 NVNGEEGSIGRGNLSFTTINLPRLAILAKGDIEKFFELLDERLDLAIEQLLHRYEVQKTLK-VKDFPFLMGQGLWKGSEN 476 (703)
T ss_pred CCCCCCCCCCCCEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHCCCCCCCCC
T ss_conf 5578816766540346870468999996799999999999999999999999999998510-033847776676557543
Q ss_pred -----HHHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHH
Q ss_conf -----88886443310002111188999972-9632-337889999999999857799978987531177-887667812
Q gi|254780502|r 645 -----KAKKSNHTHRAIGLGLMGFQSALHLL-HIPY-ASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716 (954)
Q Consensus 645 -----~~~~~~~~~R~iGlGv~Glad~L~~~-gi~Y-~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~-~~~f~gS~~ 716 (954)
.+.. ..++-.+.||+.||+.++..+ |-.. +|+||.+|+.+|+++|...+-+-+ +|.|- |..+ ++
T Consensus 477 l~~~d~i~~-~~~~~t~tIG~iGl~E~~~~~~G~~~~e~~e~~~fal~il~~mr~~~~~~~----~etg~~~~le-aT-- 548 (703)
T PRK07111 477 LGPEDSIEP-VLKQGTLGIGFIGLAETLVALTGKHHGESEEAQELGLKIVSHMRDRCDEAT----EEYKLNFSLL-AT-- 548 (703)
T ss_pred CCCCCCHHH-HHHCCEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCEEEE-EC--
T ss_conf 688751778-871774763220588999996499988998899999999999999999999----9979972689-88--
Q ss_pred HCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCC
Q ss_conf 13876244663005522533454021027289999999841204430110774368778388988475601203453267
Q gi|254780502|r 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 (954)
Q Consensus 717 ~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~ 796 (954)
|-++ .--.-.+.+-+++|. |.|++. .|.|.|+|-
T Consensus 549 -----PAEs------------------~~~Rfak~D~~~fg~----------------I~g~td--~~YYTNS~h----- 582 (703)
T PRK07111 549 -----PAEG------------------LSGKFIKKDRKEFGE----------------IKGVTD--KDYYTNSFH----- 582 (703)
T ss_pred -----CCCH------------------HHHHHHHHHHHHCCC----------------CCCCCC--CCCCCCCCC-----
T ss_conf -----3022------------------779999999997497----------------789888--982048754-----
Q ss_pred CCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEE
Q ss_conf 61366465899989985898689999998519962776448867886505222068899999998520630052320475
Q gi|254780502|r 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 (954)
Q Consensus 797 G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~ 876 (954)
+ -...++++..-++.++..|+....|--.-++
T Consensus 583 -------------------------------------~-----------pv~~~~~~fekl~~E~~~~~~~tGG~I~hv~ 614 (703)
T PRK07111 583 -------------------------------------V-----------PVYYPISIKEKIDIEAPYHKLCNGGHISYIE 614 (703)
T ss_pred -------------------------------------C-----------CCCCCCCHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf -------------------------------------6-----------8999999899997433223523763899997
Q ss_pred CC-CC--CHHHHHHHHHHHHHCCC
Q ss_conf 48-99--98999999999997298
Q gi|254780502|r 877 LD-EP--SGKKLDFIYRQAWLMGL 897 (954)
Q Consensus 877 ~~-~~--t~~~i~~~y~~Aw~~Gl 897 (954)
++ ++ ..+-+..+-..+.+.++
T Consensus 615 l~~~~~~n~~a~~~v~~~~~~~~i 638 (703)
T PRK07111 615 LDGDPSKNVEAMEIIVYAMKNTGI 638 (703)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 478777889999999999984799
No 56
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.24 E-value=0.051 Score=33.83 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHCCCEEE-EECHHHCCCCCCCCCEEEECCCCCCCCCCC------------CCCCCCCCCHHHHHHHHHC
Q ss_conf 999999999882881278-331120222124667034046752001366------------5443321112554068625
Q gi|254780502|r 545 LWRKMLTMLFETGHPWIT-FKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETAVCNLGSINLLAHF 611 (954)
Q Consensus 545 l~~~i~~~~~etG~P~i~-f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~------------~~~e~~vCnL~SiNL~~~v 611 (954)
.+++++++.-+.|.||+. |.+. -.+| +.+.+ -|+-.-|.. +..-++...--||||++.-
T Consensus 343 ~~d~~~e~tak~~~Pyf~n~~~~--~~~~----~~v~s--MgCR~rld~~e~~~~~gg~fg~~~~tGnlgVvTiNLPRia 414 (681)
T PRK08270 343 NADLLFEMTAKYGLPYFQNFINS--DLKP----EDVRS--MCCRLQLDLRELLKRGGGLFGSAELTGSIGVVTINLPRLG 414 (681)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCC--CCCC----CCCEE--CCCEEECCHHHHHCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf 79999999987488643544035--5786----55100--4450015607651256753367766674125994057789
Q ss_pred --CC--CCCCHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHH-HHHHHHHCCCCHHHHHHHHH-HCCCCCCCHH
Q ss_conf --43--44798885589999999976-------531121000188888-64433100021111889999-7296323378
Q gi|254780502|r 612 --AN--NQFDYDKLASTIRTAVRVLD-------NVIDINCHTIEKAKK-SNHTHRAIGLGLMGFQSALH-LLHIPYASPE 678 (954)
Q Consensus 612 --~~--~~~D~~~l~~~v~~avr~LD-------nVId~n~yp~~~~~~-~~~~~R~iGlGv~Glad~L~-~~gi~Y~S~e 678 (954)
.. .+| |+.|.+...++.+.|. ...+-+.||.-.... .-+.++. -||+.||+.++. ..|-..+|+|
T Consensus 415 ~~a~g~~~f-f~~Ld~~l~l~~~~L~~kr~~~~~~~~~gl~p~~~~~l~~~~~~~s-TIG~iGL~E~~~~~~G~~~~~~e 492 (681)
T PRK08270 415 YLSKGEEEF-FARLDELLELAKDSLEIKRKVIERLTDRGLYPYSKRYLGTLRNHFS-TIGVNGMNEMCRNFTGEDITTEE 492 (681)
T ss_pred HHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-EEEHHHHHHHHHHHHCCCCCCHH
T ss_conf 871999999-9999999999999999999999987345788615667777654772-15621399999997199999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHH
Q ss_conf 8999999999985779997898753117-788766781213876244663005522533454021027289999999841
Q gi|254780502|r 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 (954)
Q Consensus 679 a~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G 757 (954)
|.+|+.+|+++|...+-+.+. |.| .|..+ ++ |-++. --.-.+.+-+++|
T Consensus 493 ~~~f~~~Il~~mr~~~~~~~~----e~g~~fsl~-~T-------PAEsl------------------s~Rfa~~D~k~fg 542 (681)
T PRK08270 493 GRAFALRVLDFMRERLVEFQE----ETGNLYNLE-AT-------PAEGT------------------TYRLAKEDKKRYP 542 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHCCCEEEE-EC-------CCCHH------------------HHHHHHHHHHHCC
T ss_conf 999999999999999999999----879940355-56-------30147------------------8999999899769
Q ss_pred HHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 20443011077436877838898847560120345326761366465899989985898689999998519962776448
Q gi|254780502|r 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 (954)
Q Consensus 758 ~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~i 837 (954)
- |. +.| .+=.|.|.|+|-=
T Consensus 543 ~-------I~-------~~g--~~d~~YYTNS~H~--------------------------------------------- 561 (681)
T PRK08270 543 D-------IL-------QAG--GGDEPYYTNSTQL--------------------------------------------- 561 (681)
T ss_pred C-------CC-------CCC--CCCCCEEECCCCC---------------------------------------------
T ss_conf 8-------64-------568--8888833187147---------------------------------------------
Q ss_pred CHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC--CCHHHHHHHHHHHHH
Q ss_conf 867886505222068899999998520630052320475489--998999999999997
Q gi|254780502|r 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE--PSGKKLDFIYRQAWL 894 (954)
Q Consensus 838 p~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~--~t~~~i~~~y~~Aw~ 894 (954)
-...++++..-|+.++..|+....+--.-+++.+ ++.+-+.++-..+.+
T Consensus 562 --------pV~~~~~~feki~~E~~~~~~~~GG~I~hv~lge~~~n~~a~~~lv~~~~~ 612 (681)
T PRK08270 562 --------PVGFTDDPFEALELQDELQTKYTGGTVLHLYMGEAISSAEACKKLVKKALE 612 (681)
T ss_pred --------CCCCCCCHHHHHHHHCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --------789999988998652223423357069998668878999999999999998
No 57
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=96.23 E-value=0.036 Score=34.97 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 42289805997602598999999999851666689999---999897303----78988899999999999987441877
Q gi|254780502|r 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNM----YDGLSESDLETALIFSSRTLIEKEPN 215 (954)
Q Consensus 143 ~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~---i~~~~~~~l----ydgitt~el~~~li~aA~~Li~~ePd 215 (954)
..+.|+|+||+.++||-+||..-+..||.+- .|+... ++.++...| -..|++.+|-++....-+.+ .+=.
T Consensus 47 ~~l~VvKrdg~re~Fdr~Kl~~gi~~A~~KR-pv~~~~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~Lk~l--D~VA 123 (149)
T PRK00464 47 VPPLVIKKDGRREPFDREKLLRGLLRACEKR-PVSSEQIEAAVSRIERQLRASGEREVPSKEIGELVMEELKKL--DEVA 123 (149)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC--CCEE
T ss_conf 2657994599877777999999999996389-989999999999999999983888755999999999988620--9310
Q ss_pred HHHHHH
Q ss_conf 146779
Q gi|254780502|r 216 YAKVTA 221 (954)
Q Consensus 216 y~~vAa 221 (954)
|-..|+
T Consensus 124 YvRFAS 129 (149)
T PRK00464 124 YVRFAS 129 (149)
T ss_pred EHHHHH
T ss_conf 000245
No 58
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=95.74 E-value=0.19 Score=29.66 Aligned_cols=81 Identities=12% Similarity=0.294 Sum_probs=53.5
Q ss_pred EEEEECCCCEECCCHHHHHHHHHHHHCCCCCC-CHH---HHHHHHH----HHCCCC--CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 28980599760259899999999985166668-999---9999897----303789--8889999999999998744187
Q gi|254780502|r 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSK---IVLSETY----KNMYDG--LSESDLETALIFSSRTLIEKEP 214 (954)
Q Consensus 145 l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v-~~~---~i~~~~~----~~lydg--itt~el~~~li~aA~~Li~~eP 214 (954)
|+|+||||+.++||.+||...|.+|-.-.... ... .++.++. +...+| ++.+||++.. ++.--+-
T Consensus 1 l~ViKRnG~vv~Fd~~KI~~AI~KAFlAv~~~~~~e~v~~l~~~V~~~~~~~~~~g~~~hIE~IQD~V-----El~LMr~ 75 (842)
T PRK12364 1 MEIIKRNGETEPYDREKIAVAIRKAFASVGNELAPEIIYSLVAEVENFLFEMNKNGANVSVEKIQDLV-----EKTLMEH 75 (842)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-----HHHHHHC
T ss_conf 91783599605878799999999999975897317899999999999999747899996840058999-----9999867
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 7146779999999999
Q gi|254780502|r 215 NYAKVTARFLLEKLRR 230 (954)
Q Consensus 215 dy~~vAaRlll~~l~k 230 (954)
.+..||-+-.+++-.+
T Consensus 76 G~~~VAraYILYReeR 91 (842)
T PRK12364 76 GFYAEVKNFILYRWQR 91 (842)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 7699999999989999
No 59
>PRK10977 hypothetical protein; Provisional
Probab=95.39 E-value=0.25 Score=28.77 Aligned_cols=240 Identities=20% Similarity=0.237 Sum_probs=143.6
Q ss_pred EEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--C-
Q ss_conf 8668899999999998828812783311202221-24667034046752001366544332111255406862543--4-
Q gi|254780502|r 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N- 614 (954)
Q Consensus 539 ~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p-~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~--~- 614 (954)
.+...++...-+++..+++.|-+.+ |.+++..- ....|++-|-| .||..++- -.|.-+||...-+. +
T Consensus 188 ~~TpDd~~~~A~~~~~~csKP~faN-~~~~~~~~~~~~ygIvSCYN-----~Lp~gGGa---~TLvRlnL~~vA~~a~~~ 258 (510)
T PRK10977 188 EITPDDLLLEAAKNICECSKPHIAN-GPVHDKDFDKGGYGIVSCYN-----SLPLAGGA---STLVRLNLKEVAKRAESV 258 (510)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCCCEEEEEECC-----CCCCCCCC---CEEEEEEHHHHHHHCCCH
T ss_conf 8892799999999988718940027-77678643877736998325-----76647873---133310189899861899
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCC-----CCCHH----HHHHHHHHHHHHHCC-CCHHHHHHHHHHC------CCCCC-C
Q ss_conf -47988855899999999765311-----21000----188888644331000-2111188999972------96323-3
Q gi|254780502|r 615 -QFDYDKLASTIRTAVRVLDNVID-----INCHT----IEKAKKSNHTHRAIG-LGLMGFQSALHLL------HIPYA-S 676 (954)
Q Consensus 615 -~~D~~~l~~~v~~avr~LDnVId-----~n~yp----~~~~~~~~~~~R~iG-lGv~Glad~L~~~------gi~Y~-S 676 (954)
+|=.+.|.+.+..+.+++|.=|. .+||- +.+-= -.+.|=.| -|+-|||++.-.+ .-+|+ |
T Consensus 259 ~dF~~~~LP~~~~~~~~~md~R~~FlvEeS~FFe~sFLvkEGl--I~~drF~~MFGi~GlAEaVN~Ll~~e~~~~ryG~~ 336 (510)
T PRK10977 259 DDFFDNVLPHYCQLMIELIDARIEFLVEESHFFENSFLVKEGL--IDEERFAPMFGIYGLAEAVNLLLEKEGLAARYGKS 336 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC--CCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999867199999999999999988875256301102233264--24200321546767999999998613874346898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHH
Q ss_conf 78899999999998577999789875311778876678121387624466300552253345402102728999999984
Q gi|254780502|r 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 (954)
Q Consensus 677 ~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~ 756 (954)
++|-++..+|++.|.... +.-..+| ++ .|.+
T Consensus 337 ~~An~Lg~~I~~~l~~~V-------~~~~~~Y-~~------~gr~----------------------------------- 367 (510)
T PRK10977 337 EAANELGYRISAQLAEIV-------ENTPVKY-GT------GGRA----------------------------------- 367 (510)
T ss_pred CHHHHHHHHHHHHHHHHH-------HCCCCCC-CC------CCEE-----------------------------------
T ss_conf 217899999999999999-------5587755-66------8867-----------------------------------
Q ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12044301107743687783889884756012034532676136646589998998589868999999851996277644
Q gi|254780502|r 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 (954)
Q Consensus 757 G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ 836 (954)
+=+ | -+.+|.=.|+|+|+--.+ |
T Consensus 368 -lLH------A-QvGis~D~~vTPGvRIp~------------------------------------------G------- 390 (510)
T PRK10977 368 -LLH------A-QSGISSDIGVTPGVRIPY------------------------------------------G------- 390 (510)
T ss_pred -EEE------E-CCCCCCCCCCCCCCCCCC------------------------------------------C-------
T ss_conf -887------4-046356789899740307------------------------------------------9-------
Q ss_pred CCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8867886505222068899999998520630052320475489---9989999999999972986797965884
Q gi|254780502|r 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 (954)
Q Consensus 837 ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~---~t~~~i~~~y~~Aw~~GlKt~yy~R~~s 907 (954)
-|-++-.||+..|...+|-.++||--+-+.+ -..+-+.++-.-|...|.+-++.|-+.+
T Consensus 391 ------------~EP~~~~hl~~~A~~H~yf~sGi~DIf~fDeT~~~NP~A~~di~kGAf~~G~Ryfs~y~~~~ 452 (510)
T PRK10977 391 ------------DEPDPITHLQTVAPHHKYYPSGISDILTFDETIKRNPQALVQLCKGAFKAGMREFTANVSGN 452 (510)
T ss_pred ------------CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf ------------99986899998530014678885433243046676979999999999765976899863788
No 60
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=94.77 E-value=0.24 Score=28.84 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=50.1
Q ss_pred CEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 22898059976025989999999998516666899999---998973037----89888999999999999874418771
Q gi|254780502|r 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV---LSETYKNMY----DGLSESDLETALIFSSRTLIEKEPNY 216 (954)
Q Consensus 144 ~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i---~~~~~~~ly----dgitt~el~~~li~aA~~Li~~ePdy 216 (954)
.+.|+|+||+.+|||-+||.+-+..||+.- .|+...| +..+..+|. ..|++.+|-++....-+.| .+-.|
T Consensus 48 ~~~VvKkdg~Re~F~r~Kl~~gl~~A~~KR-pVs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~l--D~VAY 124 (156)
T COG1327 48 PLIVVKKDGRREPFDREKLRRGLIRACEKR-PVSSEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKL--DEVAY 124 (156)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC--CHHHH
T ss_conf 305887589708788899998999998159-999999999999999999866887678899999999999710--50232
Q ss_pred HHHHH
Q ss_conf 46779
Q gi|254780502|r 217 AKVTA 221 (954)
Q Consensus 217 ~~vAa 221 (954)
-..|+
T Consensus 125 vRFAS 129 (156)
T COG1327 125 VRFAS 129 (156)
T ss_pred HHHHH
T ss_conf 34666
No 61
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=94.60 E-value=0.12 Score=31.06 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCHHHCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 510211646980289-7322486799999999998704877643210799999999999999985066789852114548
Q gi|254780502|r 22 FPEKIKGVQVIKRNG-GVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQD 100 (954)
Q Consensus 22 ~~~~~~~m~ViKRnG-~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD 100 (954)
.+++-..|.|+|||| +.+|+|.+||...|..|-....+.+. .++..++...+ ++.+| ++-++||+
T Consensus 24 ~~~~~~~~~v~k~~g~~~~p~~~~k~~~~v~~a~~~l~~v~~----------~~v~~~~~~~~--q~~dg--i~t~~i~~ 89 (785)
T PRK09209 24 KEEQNVSTWITKEAGNRKLPFEPERLERAIDQIHAEFPQLDV----------EDYKRRVFGFV--ERKDS--VNADDLVD 89 (785)
T ss_pred CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCH----------HHHHHHHHHCC--CCCCC--CCHHHHHH
T ss_conf 767765358994688746886889999999999654668999----------99999998188--54289--61999999
Q ss_pred HHH---HHHHH---CCCHHHHHHHHHHH
Q ss_conf 999---99986---12089999988909
Q gi|254780502|r 101 QVE---CSLMQ---SGHHKITREYVLYR 122 (954)
Q Consensus 101 ~VE---~~LM~---~g~~~VAkaYILYR 122 (954)
.-= ..|+. -.+.-||-+-.||.
T Consensus 90 ~li~~a~~li~~~~P~y~~vaarl~~~~ 117 (785)
T PRK09209 90 LLIREAEARVDLTTPEWEHFAARLYLRR 117 (785)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999865877974899999999999
No 62
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=94.16 E-value=0.25 Score=28.70 Aligned_cols=122 Identities=19% Similarity=0.346 Sum_probs=80.9
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 98028973224867999999999987048776432107999999999999999850667898521145489999998612
Q gi|254780502|r 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSG 110 (954)
Q Consensus 31 ViKRnG~vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~~g 110 (954)
|.|-++-..||...=....++.|=.. .+.+..++-.|-+.+.... -..++.++|-+ |+..|.+.|
T Consensus 5 ~~~g~~~~~PFSkGiL~rSlta~g~~------------p~~Ay~iA~~i~e~L~~~~--~~~v~~~eir~-~~~~l~~k~ 69 (299)
T COG2074 5 IVKGDKYEMPFSKGILARSLTAAGVD------------PDLAYSIAIEIQEELKKEG--IRLVTKDEIRE-VYQKLLEKG 69 (299)
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHHHHCC--CEEEEHHHHHH-HHHHHHHHC
T ss_conf 75488665774200798888861468------------2589999999999997579--72761999999-999998732
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-
Q ss_conf 0899999889099999999876421000023442289805997602598999999999851666689999999897303-
Q gi|254780502|r 111 HHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM- 189 (954)
Q Consensus 111 ~~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~l- 189 (954)
.-+|||.|.|.|-=|...| |. ++.- .|-..|..+.|+.++-+.|
T Consensus 70 ~~e~a~rY~lwR~ir~~~~-------------p~--IILI--------------------GGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 70 DPEVAKRYLLWRRIRKMKR-------------PL--IILI--------------------GGASGVGKSTIAGELARRLG 114 (299)
T ss_pred CHHHHHHHHHHHHHHCCCC-------------CE--EEEE--------------------CCCCCCCHHHHHHHHHHHCC
T ss_conf 8799999999999861578-------------75--9996--------------------17887772579999999729
Q ss_pred -CCCCCHHHHHHHH
Q ss_conf -7898889999999
Q gi|254780502|r 190 -YDGLSESDLETAL 202 (954)
Q Consensus 190 -ydgitt~el~~~l 202 (954)
..-|.|.-|.+.+
T Consensus 115 I~~visTD~IREvl 128 (299)
T COG2074 115 IRSVISTDSIREVL 128 (299)
T ss_pred CCEEECCHHHHHHH
T ss_conf 86100424799999
No 63
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.22 E-value=0.42 Score=27.03 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 32248679999999999870487764321079999999999999998506678985211454899999986120899999
Q gi|254780502|r 38 VTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117 (954)
Q Consensus 38 vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~~g~~~VAka 117 (954)
-.||...-+.-+...|=.. -+.+..++..|.+.+...... .++-++.|-++=.+-=+.=--+||..
T Consensus 14 ~~pfs~gl~ve~l~~ag~~------------~~~a~~ia~~ve~~l~~~~r~--~vs~~~l~~~~~~~~e~~~g~eva~~ 79 (492)
T PRK12337 14 RWPFSRGLVVESLLNAGAP------------TEVAHALARRVEQRLRRLRRK--GVSPRELQRIMLEEAEDELGPEVARL 79 (492)
T ss_pred CCCCCCHHHHHHHHHCCCC------------HHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 7775200599988856997------------078899999999998752457--78999999999999998658999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC----CCCC
Q ss_conf 889099999999876421000023442289805997602598999999999851666689999999897303----7898
Q gi|254780502|r 118 YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGL 193 (954)
Q Consensus 118 YILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~l----ydgi 193 (954)
. .| +-+....|.|....|+ -||+-.-|.+.++.+. |..-..-.++..+...| ...|
T Consensus 80 ~---------~~--------qt~~f~~i~v~~~~~~-~pfs~g~larsled~g--~s~rea~~~a~~ve~~lr~~g~~~i 139 (492)
T PRK12337 80 L---------AR--------QTPAFVDIFVRAKRGQ-LPFSRGVLARTLEDAG--LSLREAYELASAVDLRLRQEGLREI 139 (492)
T ss_pred H---------HH--------CCCCCCEEEEECCCCC-CCCCHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9---------74--------5898512566217788-9862136661487559--8889999999999999998265047
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999999874418
Q gi|254780502|r 194 SESDLETALIFSSRTLIEKE 213 (954)
Q Consensus 194 tt~el~~~li~aA~~Li~~e 213 (954)
+..+++.....+...+.-.|
T Consensus 140 ~~~~l~~~~~~~l~~~~g~~ 159 (492)
T PRK12337 140 PVKRLDKVVEETLARLYGEH 159 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHH
T ss_conf 87678999999999986789
No 64
>pfam11230 DUF3029 Protein of unknown function (DUF3029). Some members in this family of proteins are annotated as ykkI. Currently no function is known.
Probab=91.86 E-value=1 Score=24.25 Aligned_cols=242 Identities=17% Similarity=0.211 Sum_probs=145.2
Q ss_pred EEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--C-
Q ss_conf 8668899999999998828812783311202221-24667034046752001366544332111255406862543--4-
Q gi|254780502|r 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N- 614 (954)
Q Consensus 539 ~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p-~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~--~- 614 (954)
.+...++.+.-+++..+++.|-+.+ +.+++..- .+.-|++-|-| .||..++- -.|.-|||...-+. +
T Consensus 174 ~~TpDd~~~~A~~~~~~csKP~~aN-~~~~~~~~~~~~ygIvSCYN-----~Lp~~GGa---~TLvRlnL~~vA~~a~~~ 244 (487)
T pfam11230 174 EVTPDDFLRQAVKNILECSKPHFAN-YPMHAKDFGEKGYGIVSCYN-----SLPLGGGA---YTLVRLNLKEVAKKAESI 244 (487)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCCCEEEEEECC-----CCCCCCCC---CEEECCCHHHHHHHCCCH
T ss_conf 8892899999999989718940027-77578654878737998235-----66657873---110000099999863899
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCC-----CCCHHH----HHHHHHHHHHHHCC-CCHHHHHHHHHH----CCC--CCC-C
Q ss_conf -47988855899999999765311-----210001----88888644331000-211118899997----296--323-3
Q gi|254780502|r 615 -QFDYDKLASTIRTAVRVLDNVID-----INCHTI----EKAKKSNHTHRAIG-LGLMGFQSALHL----LHI--PYA-S 676 (954)
Q Consensus 615 -~~D~~~l~~~v~~avr~LDnVId-----~n~yp~----~~~~~~~~~~R~iG-lGv~Glad~L~~----~gi--~Y~-S 676 (954)
+|=-+.|.+.+..+.+++|.=|. -+||-. .+-= -.+.|=.| -|+-|||++.-. -|. +|+ |
T Consensus 245 ~dF~~~~LP~~~~~~~~~md~R~~Fl~EeS~FFessFLvkEGl--I~~drF~~MFGi~GlAEaVn~Ll~~eg~~~~yG~d 322 (487)
T pfam11230 245 EDFLDEVLPHYCQLMAELIDARIRFLVEESNFFESSFLVKEGL--ISEDRFTPMFGIYGLAEAVNILLEKEGLEERYGHD 322 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999877199999999999999998876256543214454055--34202430546767999999998265874446888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHH
Q ss_conf 78899999999998577999789875311778876678121387624466300552253345402102728999999984
Q gi|254780502|r 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 (954)
Q Consensus 677 ~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~ 756 (954)
++|-++..+|++.|....- ++| .+|+.|.
T Consensus 323 ~~An~Lg~~I~~~l~~~V~-----------~~~----~~Yc~~~------------------------------------ 351 (487)
T pfam11230 323 EEANELGHQISKTLDEIVA-----------STP----VKYCEGT------------------------------------ 351 (487)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------CCC----CCCCCCC------------------------------------
T ss_conf 2678999999999999996-----------687----7630354------------------------------------
Q ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12044301107743687783889884756012034532676136646589998998589868999999851996277644
Q gi|254780502|r 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 (954)
Q Consensus 757 G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ 836 (954)
.+-.+ --| -+.||.=.|+|+|+--.+ |
T Consensus 352 --~gr~l-LHA-Q~Gis~D~~vTPGvRIp~------------------------------------------G------- 378 (487)
T pfam11230 352 --GGRAL-LHA-QVGISLDKGVTPGVRIPY------------------------------------------G------- 378 (487)
T ss_pred --CCEEE-EEE-CCCCCCCCCCCCCCCCCC------------------------------------------C-------
T ss_conf --88789-972-246056789999760527------------------------------------------9-------
Q ss_pred CCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8867886505222068899999998520630052320475489---9989999999999972986797965884
Q gi|254780502|r 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 (954)
Q Consensus 837 ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~---~t~~~i~~~y~~Aw~~GlKt~yy~R~~s 907 (954)
-|-++-.||+..|...+|-.++||--+-+.+ ...+-+.++-.-|...|.+-++.+-+.+
T Consensus 379 ------------~EP~~~~hl~~~A~~H~yf~sGisDIf~~DeT~k~NP~A~~di~kGAf~~G~R~fs~~~~~~ 440 (487)
T pfam11230 379 ------------EEPDPITHLQASAPFHQYFPSGISDILTFDETVKQNPEAVLDIIKGAFNLGYRYFTANVSSN 440 (487)
T ss_pred ------------CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf ------------99986999998503205678885322333046676979999999998755975898852788
No 65
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=87.61 E-value=2.1 Score=21.91 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=64.5
Q ss_pred EEEECCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 69802897-32248679999999999870487764321079999999999999998506678985211454899999986
Q gi|254780502|r 30 QVIKRNGG-VTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQ 108 (954)
Q Consensus 30 ~ViKRnG~-vv~Fd~~KI~~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~ 108 (954)
+|+=.++. -+||...=.+..++.|=+. ++.+.+++..+...+.+... ..++-|++-+.|-..|.+
T Consensus 5 ~~~~~~~~~~~PFSrgil~rslt~~gi~------------~~~A~~ia~ei~~~L~~~~~--~~i~~~el~~~v~~~l~~ 70 (306)
T PRK04220 5 RITVKGKKYEMPFSKGILARSLTAAGMK------------PDLAYEIASEIEEELKKEGI--TKITKEELRRRVYYKLIE 70 (306)
T ss_pred EEEECCCEEECCCHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHCCC--EEECHHHHHHHHHHHHHH
T ss_conf 9996485113663189999999980898------------88999999999999986577--163599999999999998
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 12089999988909999
Q gi|254780502|r 109 SGHHKITREYVLYREER 125 (954)
Q Consensus 109 ~g~~~VAkaYILYRe~R 125 (954)
.|+-++|+.|-|.|.=|
T Consensus 71 ~~~~~~a~rY~~~r~~r 87 (306)
T PRK04220 71 KDYEEIAEKYLLWRRIR 87 (306)
T ss_pred HCCHHHHHHHHHHHHHH
T ss_conf 44099999999999985
No 66
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=77.26 E-value=2.6 Score=21.17 Aligned_cols=49 Identities=31% Similarity=0.523 Sum_probs=43.1
Q ss_pred EHHHHHHHHHHHHHHHCCCEE----EEECHHHC---CCCCCCCCEEEECCCCCCCC
Q ss_conf 688999999999988288127----83311202---22124667034046752001
Q gi|254780502|r 541 SAVALWRKMLTMLFETGHPWI----TFKDPCNI---RSPQQHVGVVHSSNLCTEIT 589 (954)
Q Consensus 541 ~A~~l~~~i~~~~~etG~P~i----~f~D~~N~---~~p~~~~g~I~~sNlC~Ei~ 589 (954)
..-.|||++++...+...|=+ +++|++-. ++|.+.-|+|-++|+=|-|.
T Consensus 200 ~sS~LWR~~V~e~~~~eYPdv~L~H~yiDnAAM~Lvk~P~~fDGV~vT~N~FGDIl 255 (370)
T TIGR00169 200 ESSRLWRKTVEEIAKEEYPDVELEHQYIDNAAMQLVKSPRQFDGVVVTGNLFGDIL 255 (370)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf 54378999999998468880573021587887675328650486677265330068
No 67
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=76.73 E-value=0.92 Score=24.53 Aligned_cols=109 Identities=28% Similarity=0.404 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEE
Q ss_conf 88999999899999740466677247898356788999973025787302332023202034879999852128747871
Q gi|254780502|r 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 (954)
Q Consensus 424 ~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~ 503 (954)
.||++.+.+.|+.++.+.|.||-+.-+.=-. +. .+.+-+++++.+ ...+-
T Consensus 98 ~iPllhIidaTa~~ik~~g~kkvgLLgT~~T----m~-------------------------~~fY~~~l~~~g-ievvv 147 (230)
T COG1794 98 GIPLLHIIDATAKAIKAAGAKKVGLLGTRFT----ME-------------------------QGFYRKRLEEKG-IEVVV 147 (230)
T ss_pred CCCEEHHHHHHHHHHHHCCCCEEEEEECCCH----HH-------------------------HHHHHHHHHHCC-CEEEC
T ss_conf 9973307899999987658861588613005----77-------------------------689999999779-64756
Q ss_pred CCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEEC
Q ss_conf 0114441001344378-998778752104886057786688999999999988288127833112022212466703404
Q gi|254780502|r 504 PDEVSDLHDLYGKEFE-IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 (954)
Q Consensus 504 P~~~~~L~d~~g~~fe-~~Y~~~e~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~s 582 (954)
|++- .-+++. -.|.+.. .|.. +=..+++|..+++...+-|--++++
T Consensus 148 Pdd~------~q~~v~~iIy~El~----~G~~----~~~sr~~~~~ii~~l~~~Gae~vIl------------------- 194 (230)
T COG1794 148 PDDD------EQAEVNRIIYEELC----QGIV----KDASRELYLAVIERLAERGAEGVIL------------------- 194 (230)
T ss_pred CCHH------HHHHHHHHHHHHHH----CCCH----HHHHHHHHHHHHHHHHHCCCCEEEE-------------------
T ss_conf 7778------89999999999995----4410----2778999999999999769988999-------------------
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 67520013665443
Q gi|254780502|r 583 NLCTEITLNSSSEE 596 (954)
Q Consensus 583 NlC~Ei~l~~~~~e 596 (954)
=||||+|--+..+
T Consensus 195 -GCTEi~lll~~~d 207 (230)
T COG1794 195 -GCTEIPLLLSQDD 207 (230)
T ss_pred -ECCCHHEEECCCC
T ss_conf -4331104564666
No 68
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=63.94 E-value=8.7 Score=17.29 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHCCCCCCHH-----HHHHCCCHHHCCCHHHHHHHHCCCCEEEE
Q ss_conf 6788999973025787302-----33202320203487999985212874787
Q gi|254780502|r 455 WHIDVEEFLDLRKNTGDDR-----RRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 (954)
Q Consensus 455 wH~Di~eFl~~k~n~G~~~-----~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf 502 (954)
.|+-|..||++=-+.|||. +|.|.++-=--|-+.|=+++ ++|+|+
T Consensus 252 ~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~---~~~tl~ 301 (487)
T TIGR01578 252 SHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERF---PDLTLS 301 (487)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH---CCCEEE
T ss_conf 48820001154201587588974485652577899999998762---686473
No 69
>pfam03915 AIP3 Actin interacting protein 3.
Probab=62.78 E-value=9.5 Score=17.01 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 44798885589999999976
Q gi|254780502|r 614 NQFDYDKLASTIRTAVRVLD 633 (954)
Q Consensus 614 ~~~D~~~l~~~v~~avr~LD 633 (954)
+..|....++.|-.-||.|.
T Consensus 343 pg~~~~~~kd~VL~EV~aL~ 362 (422)
T pfam03915 343 PGESPNDAKDQVLGEVRALN 362 (422)
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 98787789999999998539
No 70
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family; InterPro: IPR014304 This entry is a group of RNA polymerase sigma factors where one of the members is designated as SigZ in Bacillus subtilis . This group has a very sporadic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member Dechloromonas aromatica (strain RCB), that appears to have two of these sigma factors. A member of which appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri (strain ATCC 700601 / ES114), where a second one is chromosomally encoded..
Probab=56.19 E-value=13 Score=16.11 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=62.7
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHH
Q ss_conf 9999870487764321079999999999999998506678985211454899999986120899999889--09999999
Q gi|254780502|r 51 MKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL--YREERSDV 128 (954)
Q Consensus 51 ~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~~g~~~VAkaYIL--YRe~Ra~~ 128 (954)
=|+|+.-.- .....|+.+.+.|.=++....++ .-....| ++=.|+|||+=|. ||.+++..
T Consensus 8 L~~F~~~RV-------~d~~~v~D~LQeVf~K~~~~L~~--L~d~~~~---------~SWlyqIArNtiiD~YR~k~~~~ 69 (170)
T TIGR02959 8 LKAFIKKRV-------SDASVVEDLLQEVFIKIHKNLPS--LKDGQKL---------QSWLYQIARNTIIDFYRSKKRSK 69 (170)
T ss_pred HHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHH--CCCCCHH---------HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999987405-------40466416899999999854420--0463224---------78999988765643125767410
Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 98764210000234422898059976025989999999998516666899999998973037898889999999
Q gi|254780502|r 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 (954)
Q Consensus 129 R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~lydgitt~el~~~l 202 (954)
--....... ||..+.=-.+.|..-|...-..|.+.....|. ..=++|+|..|+.+-|
T Consensus 70 ~L~~~l~~~-------------~~~~ee~~~~e~~~Cl~~~i~~LP~~~r~a~~----L~el~G~sQ~e~A~kL 126 (170)
T TIGR02959 70 ELPEDLLAA-------------DSAEEETFVKELSQCLRPMIKELPDEYREAIR----LTELEGLSQKEIAEKL 126 (170)
T ss_pred CCCHHHHHC-------------CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH----HHHCCCCCHHHHHHHC
T ss_conf 031555302-------------67766640456888889988756986788988----8750799827998761
No 71
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=55.61 E-value=13 Score=16.04 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=35.6
Q ss_pred CCEEEEEEEHHHH---HHHHHHHHHHHCCCEEEEECHHHCCCCCCCC
Q ss_conf 8605778668899---9999999988288127833112022212466
Q gi|254780502|r 533 EIKVFRKISAVAL---WRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 (954)
Q Consensus 533 ~~~~~k~i~A~~l---~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~ 576 (954)
......++++.+. ...|++..-+.|+-|+++||+--+.+|.++.
T Consensus 198 ~V~~fg~~~~~e~~eei~eIve~L~keGREGVV~Kdpdm~~~plKYt 244 (382)
T COG1423 198 HVEIFGEFPADEAGEEIYEIVERLNKEGREGVVMKDPDMRVPPLKYT 244 (382)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEE
T ss_conf 06774266366768999999999735577535863813356863311
No 72
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422 This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding.
Probab=55.06 E-value=11 Score=16.48 Aligned_cols=63 Identities=17% Similarity=0.404 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE---------EEECCCC-CHHHHHHHCCCCC
Q ss_conf 41012443111200012787642889999998999997404666772478---------9835678-8999973025787
Q gi|254780502|r 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA---------YLETWHI-DVEEFLDLRKNTG 470 (954)
Q Consensus 401 G~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~---------~l~~wH~-Di~eFl~~k~n~G 470 (954)
|+|-..|+++-..|....-+..-.||.+|+.|+.. |.--|+.+- .+|..|+ |+
T Consensus 141 GVN~~~L~a~~~~VSNaSCTTNC~vP~~KlL~~A~------G~e~~~iTTIHSaM~DQ~VIDAYH~eDL----------- 203 (334)
T TIGR01532 141 GVNQEDLSAEHKIVSNASCTTNCIVPLIKLLDDAI------GIESGTITTIHSAMNDQQVIDAYHHEDL----------- 203 (334)
T ss_pred ECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHC------CCCCEEEEEEEECCCCCCEEECCCCHHH-----------
T ss_conf 02110235230367556541110110643210121------5330146666403468850223474013-----------
Q ss_pred CHHHHHHCCCHHH
Q ss_conf 3023320232020
Q gi|254780502|r 471 DDRRRTHDMNTAN 483 (954)
Q Consensus 471 ~~~~r~~~~~~av 483 (954)
+|++-.+.||
T Consensus 204 ---RRTRaA~QSi 213 (334)
T TIGR01532 204 ---RRTRAASQSI 213 (334)
T ss_pred ---HHHHHHCCCE
T ss_conf ---4445441222
No 73
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=52.50 E-value=7.3 Score=17.86 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC--------CHHHHHHHHHHHHH------HHHHCCCCCCCC
Q ss_conf 9999999974330358611222100222232110254766--------41358999989999------985105444101
Q gi|254780502|r 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD--------DLYGIFGALQENAM------LAKYSGGLGNDW 404 (954)
Q Consensus 339 ~~~~Y~~ls~~~~~~atPtl~Nagt~~~qlsSCfl~~v~D--------sl~~I~~~~~~~a~------isk~ggGiG~~~ 404 (954)
|-+|||.||.+.=+- -+-+|.+--.-.--+-|+..+|+ +-++++-..+++.. +-.-|.|+. +
T Consensus 83 a~kfyd~m~~~~~ik--v~r~~eme~li~gl~~fv~~IP~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvS--i 158 (342)
T COG5146 83 AYKFYDRMSKQLDIK--VIRENEMEILINGLNYFVINIPAEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVS--I 158 (342)
T ss_pred CHHHHHHHHHHCCCE--EEECCHHHHHHHCCCCEEEECCHHHEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCEE--E
T ss_conf 110577776531400--231202777771533102426678735305433323323343054445213685168737--9
Q ss_pred CCC-------CCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 244-------31112000127876428899999---9899999740466677247898356788
Q gi|254780502|r 405 TPV-------RGLGAHIHGTNGKSQGVIPFLKV---ANDTAVAVNQGGKRKGAVCAYLETWHID 458 (954)
Q Consensus 405 s~i-------R~~Gs~I~g~~G~ssG~v~flk~---~n~~~~~v~QgG~RrGA~~~~l~~wH~D 458 (954)
.++ |--|+... +|+--|..+.+-- ||.+.. ..|+|-|-.--|..=++.-.|
T Consensus 159 lkvtgpsqf~RvGGsslG--GGtlwGLlsLlt~a~~ydqmld-~aq~GDn~svDmlVgdIYg~d 219 (342)
T COG5146 159 LKVTGPSQFERVGGSSLG--GGTLWGLLSLLTQATDYDQMLD-MAQHGDNNSVDMLVGDIYGDD 219 (342)
T ss_pred EEECCCCHHCCCCCCCCC--CCHHHHHHHHHCCCCCHHHHHH-HHHCCCCCCCEEEEHHHCCCC
T ss_conf 995385332002554667--5028889998726443999999-985388764101301220676
No 74
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=52.27 E-value=5 Score=19.09 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=106.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHCCCCC-CHHHHHHCCCHHH-CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 677247898356788999973025787-3023320232020-34879999852128747871011444100134437899
Q gi|254780502|r 444 RKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTAN-WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 (954)
Q Consensus 444 RrGA~~~~l~~wH~Di~eFl~~k~n~G-~~~~r~~~~~~av-~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~ 521 (954)
|.|-.=-=.++-+.|-.-=|++++-+| ... +=||- =|+-..|++-+.-+--++|+-++| .|||+.++.=+..
T Consensus 67 ~eG~~H~G~~ia~~g~~~riDl~~~tGG~~V-----~VYGQTEvtrDL~~ARe~~G~~~v~~a~~V-~~HD~~~~~P~gc 140 (393)
T TIGR02360 67 REGLVHEGIEIAFDGQRFRIDLKALTGGKTV-----MVYGQTEVTRDLYEAREQAGLKTVYDADDV-RLHDLAGDRPEGC 140 (393)
T ss_pred HCCCCCCCEEEECCCCEEECCHHHHCCCCEE-----EEECCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCCCCC
T ss_conf 3587325654501782420007660589789-----997661577889999986389556411432-1126567888952
Q ss_pred HHHHHHHHC-------------CCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCEEEECCCCCCC
Q ss_conf 877875210-------------4886057786688999999999988288127833112022212466703404675200
Q gi|254780502|r 522 YENYERQAD-------------RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 (954)
Q Consensus 522 Y~~~e~~~~-------------~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei 588 (954)
+..|+..+. .-.+-..++||+..+= ..-|-.|..-+|+.--|-||..-
T Consensus 141 ~VT~~~dG~~~~~dCDfIAGCDGFHGvSR~siP~~~~k-------------------~fErVYPFGWLGiLsetPPv~~E 201 (393)
T TIGR02360 141 HVTFERDGEEHRIDCDFIAGCDGFHGVSRASIPAEVLK-------------------EFERVYPFGWLGILSETPPVSHE 201 (393)
T ss_pred EEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCHHHHH-------------------CCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 58777879177764026752788868654456512411-------------------12450676200120578688644
Q ss_pred CCCCCCC-CCCCCCHHHHHHHHHCC------------CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 1366544-33211125540686254------------344798885589999999976531
Q gi|254780502|r 589 TLNSSSE-ETAVCNLGSINLLAHFA------------NNQFDYDKLASTIRTAVRVLDNVI 636 (954)
Q Consensus 589 ~l~~~~~-e~~vCnL~SiNL~~~v~------------~~~~D~~~l~~~v~~avr~LDnVI 636 (954)
..|...+ =+|.|-+=|-.+++|.. |..| |+||++= +--..-|.+|
T Consensus 202 LIY~~h~RGFALCSmRS~~rSRYY~Q~pL~D~vedWSDd~F-W~ELK~R--lp~e~A~~Lv 259 (393)
T TIGR02360 202 LIYSNHERGFALCSMRSETRSRYYVQVPLTDKVEDWSDDRF-WEELKRR--LPEEAAERLV 259 (393)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHH-HHHHHHC--CCHHHHHHCC
T ss_conf 41036763024553203656735887145688778870778-9998613--7866875405
No 75
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, L subunit; InterPro: IPR012737 Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form (2.7.1 from EC) with a phosphoprotein donor related to PTS transport proteins. The sequences in this entry represent the subunit homologous to the E. coli YcgS subunit..
Probab=50.25 E-value=15 Score=15.45 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE---E
Q ss_conf 76641358999989999985105444-1012443111200012787642889999998999997404666772478---9
Q gi|254780502|r 376 VPDDLYGIFGALQENAMLAKYSGGLG-NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA---Y 451 (954)
Q Consensus 376 v~Dsl~~I~~~~~~~a~isk~ggGiG-~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~---~ 451 (954)
.+.++..||+.+. .++|||-||--| +|=+-....|..+++. -...-+=.+.++|++.+..|.+ |..|... .
T Consensus 50 ~~~~~~~~LK~~g-M~LiS~VGGASGPLYGT~Fl~as~a~~~~-~~~~~~~~l~~~l~~g~~Gi~~---RGkA~~GeKTM 124 (200)
T TIGR02365 50 KDKTIQEILKKTG-MALISKVGGASGPLYGTAFLKASKALKDK-EEILDAEDLAEILEAGLEGIKA---RGKAQLGEKTM 124 (200)
T ss_pred CCCCHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCC
T ss_conf 8999878999988-88852203201577999999999986230-1268988999999999999986---48999998641
Q ss_pred EECCCCCHHHHHHH
Q ss_conf 83567889999730
Q gi|254780502|r 452 LETWHIDVEEFLDL 465 (954)
Q Consensus 452 l~~wH~Di~eFl~~ 465 (954)
+|+|-|=.+-|=.+
T Consensus 125 ~D~w~P~~e~l~~a 138 (200)
T TIGR02365 125 VDVWAPAVEALKKA 138 (200)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 03568889999998
No 76
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=50.24 E-value=5.3 Score=18.86 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=64.6
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHH
Q ss_conf 88999972963233788999999999985779997898753117788766781213876244663005522533454021
Q gi|254780502|r 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 (954)
Q Consensus 663 lad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~ 742 (954)
+-++|-.+||+|..-++- +..++.+.|+.+|..+. .-.+.++--|. ....--+..+...
T Consensus 4 l~~~L~~~~I~Y~~~~H~-------------p~~T~eea~~~~~~~~~----~~~K~L~lkdk----k~~~~l~v~~~~~ 62 (156)
T cd04335 4 LLALLDELGIAYETVEHP-------------PVFTVEEADEVLGELPG----AHTKNLFLKDK----KGRLYLVTALHDK 62 (156)
T ss_pred HHHHHHHCCCCEEEEECC-------------CCCCHHHHHHHCCCCCC----CCEEEEEEEEC----CCCEEEEEECCCC
T ss_conf 999999879978998679-------------96989999976187865----50678999948----9978999907893
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEE
Q ss_conf 027289999999841204430110774368778388988475601203453
Q gi|254780502|r 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 (954)
Q Consensus 743 ~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~ 793 (954)
+.||..|++.+.. + -+..|+-....-++|+..|--|+|++++-..
T Consensus 63 ~vd~k~l~~~lg~---~---~l~~A~~e~l~~~~g~~~G~VsPfgl~~d~~ 107 (156)
T cd04335 63 KVDLKALSKQLGA---S---RLSFASEERLEEKLGVTPGSVTPFALINDKE 107 (156)
T ss_pred EECHHHHHHHHCC---C---CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 7869999998689---9---7550899999998789988237531134888
No 77
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=49.44 E-value=5.9 Score=18.51 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=22.4
Q ss_pred HHHHHH----CCCCCCCCHHHHHHCCCCCCCCCCCCCC-CCCHHHH
Q ss_conf 999974----3303586112221002222321102547-6641358
Q gi|254780502|r 343 YNLLSS----FHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383 (954)
Q Consensus 343 Y~~ls~----~~~~~atPtl~Nagt~~~qlsSCfl~~v-~Dsl~~I 383 (954)
|-+|.+ |+..==||-= +.+.+|..++||||+|+ +|+...|
T Consensus 195 YG~Lk~E~GvHRLVRISPFD-a~~rRHTSFasv~V~P~~Dd~tI~I 239 (373)
T TIGR00020 195 YGYLKSEQGVHRLVRISPFD-ANARRHTSFASVEVMPEVDDDTIDI 239 (373)
T ss_pred CCCCCCCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 33022687417877506666-8695332268888624035744511
No 78
>pfam10407 Cytokin_check_N Cdc14 phosphatase binding protein N-terminus. Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N-terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance.
Probab=46.28 E-value=16 Score=15.36 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99999999999999850667898521145489
Q gi|254780502|r 70 DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQ 101 (954)
Q Consensus 70 ~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~ 101 (954)
..+.+|.++++.++.+..|....+.|+.+||-
T Consensus 14 ~tl~~L~~ei~~r~~klYP~~~~l~I~slQd~ 45 (74)
T pfam10407 14 NTLLELSEEIIERFKKLYPNESELEILSLQDE 45 (74)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 86999999999999976879987547872156
No 79
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=45.23 E-value=18 Score=14.91 Aligned_cols=92 Identities=13% Similarity=0.273 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 89999988909999999987642100002344228980599760259899999999985166668999999989730378
Q gi|254780502|r 112 HKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191 (954)
Q Consensus 112 ~~VAkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~~~~~lyd 191 (954)
+..++.||.||....... +.....+-...+....+..++..|+.-.+. .......+|.
T Consensus 5 ~~L~~d~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~Lr~~gdele~~~~~-~f~~~~~~l~- 62 (144)
T cd06845 5 RRLARDYLRYRLGEPETP--------------------NSPLPSGSPPSEVAETLRRVGDELEEKHRR-LFENMCRQLN- 62 (144)
T ss_pred HHHHHHHHHHHHCCCCCC--------------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-
T ss_conf 999999999998489988--------------------888899999309999999999999999799-9999999855-
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Q ss_conf 988899999999999987441-87714677999999
Q gi|254780502|r 192 GLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLE 226 (954)
Q Consensus 192 gitt~el~~~li~aA~~Li~~-ePdy~~vAaRlll~ 226 (954)
++...........|.+|.+. ..+|+.|++=+.+.
T Consensus 63 -~~~~~~~~~f~~Va~elf~d~~inWGRIval~~F~ 97 (144)
T cd06845 63 -ISPDNAYEVFQEVARELFEDGGINWGRIVALFAFG 97 (144)
T ss_pred -CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf -89302999999999999625898799999999999
No 80
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=44.13 E-value=19 Score=14.80 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHCCCCCHHHHHCCHHHCCCC
Q ss_conf 2111188999972963233788999999999985779997898753117-788766781213876244663005522533
Q gi|254780502|r 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 (954)
Q Consensus 658 lGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG-~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~ 736 (954)
+|.-||..+|-.+++..==+..--|+.+|.+. | .+.|+|.| +|--|++..|... -|.|-
T Consensus 53 l~~e~l~~~l~e~~i~llIDATHPyAa~iS~N----a----~~aake~gipy~r~eRP~~~~~---gd~~~--------- 112 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDATHPYAARISQN----A----ARAAKETGIPYLRLERPPWAPN---GDNWI--------- 112 (257)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCHHHHHHHHH----H----HHHHHHHCCCEEEEECCCCCCC---CCCEE---------
T ss_conf 88789999999749888997887579999899----9----9999985996799877755457---99669---------
Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCC
Q ss_conf 45402102728999999984120443011077436877838898847560120345326761366465899989985898
Q gi|254780502|r 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 (954)
Q Consensus 737 ~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~ 816 (954)
.-.||+++.+-+++.| |+-.++ ...+.+.-...+- .-++++.|..-. +--+....++|+-
T Consensus 113 -----~V~d~~ea~~~~~~~~-~rVflt-----~G~~~l~~f~~~~--~~~~~~~Rvlp~-------~~~~~~~~~~~~p 172 (257)
T COG2099 113 -----EVADIEEAAEAAKQLG-RRVFLT-----TGRQNLAHFVAAD--AHSHVLARVLPP-------PDVLAKCEDLGVP 172 (257)
T ss_pred -----EECCHHHHHHHHHCCC-CCEEEE-----CCCCCHHHHHCCC--CCCEEEEEECCC-------HHHHHHHHHCCCC
T ss_conf -----8458999999875047-737995-----0752159886375--556499997694-------3877877761998
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 68999999851996277644886788650522206889999999852063005232047548999899999999999729
Q gi|254780502|r 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 (954)
Q Consensus 817 ~~~~~~~i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~G 896 (954)
.+ +|..-.|. |-.. .+.+=-+|-=||-=+|||===...+.+++.. |=++|
T Consensus 173 ~~----~Iia~~GP--------------fs~~--------~n~all~q~~id~vItK~SG~~Gg~~~Ki~a----A~eLg 222 (257)
T COG2099 173 PA----RIIAMRGP--------------FSEE--------DNKALLEQYRIDVVVTKNSGGAGGTYEKIEA----ARELG 222 (257)
T ss_pred HH----HEEEECCC--------------CCHH--------HHHHHHHHHCCCEEEECCCCCCCCCHHHHHH----HHHCC
T ss_conf 46----68982388--------------6758--------8999999848889998267766673898999----99869
Q ss_pred CCEEEEECC
Q ss_conf 867979658
Q gi|254780502|r 897 LKTTYYLRS 905 (954)
Q Consensus 897 lKt~yy~R~ 905 (954)
+.-++.=|-
T Consensus 223 i~VI~I~Rp 231 (257)
T COG2099 223 IPVIMIERP 231 (257)
T ss_pred CCEEEEECC
T ss_conf 938999467
No 81
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase; InterPro: IPR014192 Members of this entry belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are paired with genes for an activating protein that creates a glycine radical. Members of this entry are related to IPR012833 from INTERPRO, a functionally equivalent protein set; no genome has members in both entries. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons ..
Probab=43.57 E-value=19 Score=14.74 Aligned_cols=197 Identities=19% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCCCCCHHHHHHHHHCCCCC---CCHH-HHHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 33211125540686254344---7988-8558999999997-------65311210001888886443310002111188
Q gi|254780502|r 596 ETAVCNLGSINLLAHFANNQ---FDYD-KLASTIRTAVRVL-------DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 (954)
Q Consensus 596 e~~vCnL~SiNL~~~v~~~~---~D~~-~l~~~v~~avr~L-------DnVId~n~yp~~~~~~~~~~~R~iGlGv~Gla 664 (954)
.+++-|.-.|||.|.+.+.. .++. -|++.|...-+.+ ..-+.-.-.|+=++..-+...-=+-|||.|+.
T Consensus 355 ~tGS~~ViTiNlnR~~q~~~~~~~~Y~~~L~~~v~~i~K~q~Ayr~~~~e~~~~g~Lp~Y~aG~i~L~~QylTIGinG~~ 434 (638)
T TIGR02827 355 ATGSINVITINLNRLVQESRDDREKYLQILAHEVDKIKKYQVAYRELMKEYLAEGLLPLYDAGFITLDKQYLTIGINGMV 434 (638)
T ss_pred CCCCEEEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEEEEECHHHHH
T ss_conf 10540456532257875306864689999999999999999999999999986267530005521532122201112678
Q ss_pred HHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCC
Q ss_conf 999972963-------2337889999999999857799978987531177887667812138762446630055225334
Q gi|254780502|r 665 SALHLLHIP-------YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 (954)
Q Consensus 665 d~L~~~gi~-------Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~ 737 (954)
.+--.+||. =.++|..+|++.....|+..+-+++. +.|. .|. .=..|-+..
T Consensus 435 EaAe~~GL~tedidG~~~~~ey~~FV~~~L~~I~~~~~~~~~----~yg~--~FN-----~E~vPAEn~----------- 492 (638)
T TIGR02827 435 EAAEFMGLTTEDIDGVKYNEEYKDFVQNVLKVIYEANEKAYK----EYGF--MFN-----TEFVPAENL----------- 492 (638)
T ss_pred HHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HCCC--CCC-----CCCCCHHHH-----------
T ss_conf 757641675000147775245789886466789998886776----2484--103-----125754667-----------
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCC
Q ss_conf 54021027289999999841204430110774368778388988475601203453267613664658999899858986
Q gi|254780502|r 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 (954)
Q Consensus 738 ~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~ 817 (954)
|+.|+. |+
T Consensus 493 -------------------gVk~A~-----------------------------------------------------wD 500 (638)
T TIGR02827 493 -------------------GVKNAK-----------------------------------------------------WD 500 (638)
T ss_pred -------------------HHHHHH-----------------------------------------------------HH
T ss_conf -------------------524432-----------------------------------------------------33
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHH---HHCCCHHCCCHHHHHHHHHH-HCCHHCCCEEEEEECC-CC-CHHHHHHHHHH
Q ss_conf 8999999851996277644886788---65052220688999999985-2063005232047548-99-98999999999
Q gi|254780502|r 818 EAMISDLKYHDGSIGNIERIPDDLK---KIHATAFEIDPMWLIESASR-RQKWIDQAQSLNLYLD-EP-SGKKLDFIYRQ 891 (954)
Q Consensus 818 ~~~~~~i~~~~Gsv~~i~~ip~~~k---~~f~ta~ei~~~~~i~~~a~-~Q~~IDqsiS~tl~~~-~~-t~~~i~~~y~~ 891 (954)
+..+|. .+|-+.+ .+-+.+..++..+.+++-+. ..+|+|.|--+-||+. .- |.+.-..+...
T Consensus 501 -------kf~dG~-----~vprdcYnsyfy~ve~~~~~~Ldk~~lhG~~~~~~l~GGsaLHlNL~E~lks~~~y~~l~~~ 568 (638)
T TIGR02827 501 -------KFKDGY-----FVPRDCYNSYFYVVEDNSTNVLDKFRLHGKEMIEYLDGGSALHLNLDESLKSEEEYLKLVRV 568 (638)
T ss_pred -------HHHCCC-----CCCCEEECCCEEEEECCCCCHHHHHHHCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf -------553687-----56500005523787023457445645064256643177502521356542126899999999
Q ss_pred HHHCCCC
Q ss_conf 9972986
Q gi|254780502|r 892 AWLMGLK 898 (954)
Q Consensus 892 Aw~~GlK 898 (954)
|=+.||-
T Consensus 569 aA~~Gcn 575 (638)
T TIGR02827 569 AAETGCN 575 (638)
T ss_pred HHHCCCC
T ss_conf 9973982
No 82
>TIGR00444 mazG MazG family protein; InterPro: IPR011551 This group of prokaryotic proteins has no known function. It includes the uncharacterised protein MazG in Escherichia coli..
Probab=43.10 E-value=11 Score=16.54 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3211025476641358999989999985105444101244
Q gi|254780502|r 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 (954)
Q Consensus 368 lsSCfl~~v~Dsl~~I~~~~~~~a~isk~ggGiG~~~s~i 407 (954)
|.|-.|..||-+|.+++++ ++|+|...-||++|..|
T Consensus 123 llss~Ld~~p~tLPaL~~A----~KlqkkaA~VGFdW~~v 158 (253)
T TIGR00444 123 LLSSLLDSVPRTLPALMRA----AKLQKKAAKVGFDWEDV 158 (253)
T ss_pred HHHHHHHCCCCCCCHHHHH----HHHHHHHHCCCCCCCCC
T ss_conf 6888774146656345686----67768873278986643
No 83
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=41.97 E-value=7.6 Score=17.73 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=62.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHC-CC--CCC
Q ss_conf 188999972963233788999999999985779997898753117788766781213876244663005522-53--345
Q gi|254780502|r 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DE--LAM 738 (954)
Q Consensus 662 Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~-~~--~~~ 738 (954)
-+.++|-++||+|.--++ ....+|.+.|+.+|..+. .-.+.++-.+ .+.. .. +.+
T Consensus 3 rl~~~L~~~~I~y~~~~H-------------~~~~t~~eaa~~~g~~~~----~~~Ktl~l~~-----~~~~~~~~l~v~ 60 (153)
T cd04336 3 RLQELLNTNGARFRVLDH-------------PPEGTSEEVAAIRGTELG----QGAKALLCKV-----KDGSRRFVLAVL 60 (153)
T ss_pred HHHHHHHHCCCCEEEEEC-------------CCCCCHHHHHHHCCCCCC----CEEEEEEEEE-----CCCCCEEEEEEE
T ss_conf 899999987997699987-------------999989999987599967----2566999997-----799948999999
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEE
Q ss_conf 4021027289999999841204430110774368778388988475601203
Q gi|254780502|r 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 (954)
Q Consensus 739 ~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y 790 (954)
+...+.||..|++.+ |.| -+..|+-.....+.||..|--|.|...+
T Consensus 61 p~~~~vdlk~l~~~~---g~k---~~~~a~~e~~~~~~g~~~GaV~PfG~~~ 106 (153)
T cd04336 61 PADKKLDLKAVAAAV---GGK---KADLASPEEAEELTGCVIGAVPPFSFDP 106 (153)
T ss_pred ECCCEECHHHHHHHH---CCC---CCCCCCHHHHHHHHCCCCCEECCCCCCC
T ss_conf 588532888999985---997---1246899999996099866077667777
No 84
>KOG3938 consensus
Probab=40.31 E-value=21 Score=14.39 Aligned_cols=16 Identities=6% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 5899999999765311
Q gi|254780502|r 622 ASTIRTAVRVLDNVID 637 (954)
Q Consensus 622 ~~~v~~avr~LDnVId 637 (954)
.+....++.-+|++.|
T Consensus 254 ~e~~~~~i~kindlle 269 (334)
T KOG3938 254 DEFEEAAIEKINDLLE 269 (334)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 6999999999999999
No 85
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=38.47 E-value=23 Score=14.19 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCCC
Q ss_conf 89986655767787777517739999976412101128-9899999999762114892753889999999965416454
Q gi|254780502|r 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 (954)
Q Consensus 256 f~~~i~~G~~~~~i~~~l~~~dl~~L~~~Id~~RD~~F-~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~e~ 333 (954)
|-..|++|--+ |++.-+..||.|=|.| || =+=|.|-||+=|+++.
T Consensus 137 lLDLIQEG~lG-----------L~RAVEKFDPtrGYKFSTY----------------------AYWWIRQ~ITRAIA~q 182 (336)
T TIGR02997 137 LLDLIQEGTLG-----------LERAVEKFDPTRGYKFSTY----------------------AYWWIRQGITRAIANQ 182 (336)
T ss_pred HHHHHHHHHHH-----------HHHCCCCCCCCCCCCCCCH----------------------HHHHHHHHHHHHHHCC
T ss_conf 35688763431-----------2211233577778863301----------------------2468756889998436
No 86
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family; InterPro: IPR011517 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents a group of sigma factors that are able to regulate extra cellular function (ECF) . Eubacteria display considerable genetic diversity between ECF-sigma factors, but all retain two features: the ability to respond to extra-cytoplasmic functions; and regulation by anti-sigma and anti-anti-sigma factors . This family show sequence similarity to IPR007627 from INTERPRO and IPR007630 from INTERPRO.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=36.78 E-value=24 Score=14.01 Aligned_cols=163 Identities=12% Similarity=0.147 Sum_probs=97.4
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-------HH---HHH-CCCHHH--
Q ss_conf 99999998704877643210799999999999999985066789852114548999-------99---986-120899--
Q gi|254780502|r 48 RAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVE-------CS---LMQ-SGHHKI-- 114 (954)
Q Consensus 48 ~AI~KAFlav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE-------~~---LM~-~g~~~V-- 114 (954)
..|+....++..|...+...+-..+.+--..+..+..++-.++.+..+|.+-+.|. ++ |+. .++.++
T Consensus 2 ~~vt~ll~~~~~Gd~~A~~~L~~~~Y~~LR~~A~~~~~~~~~~~~Lq~~~~~~ci~stT~LV~EAylrL~~t~~~~~~~~ 81 (194)
T TIGR02999 2 APVTELLQQWQNGDQAARDQLFPALYQELRRIARRELRRERSGQTLQVEVLAVCIDSTTALVHEAYLRLVDTQDEQEWSD 81 (194)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 25999999883645889999999999999999999998510366520446775104667889987664212320232225
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf ----------9998890999999998764210000234422898059976025989999999998516666899999998
Q gi|254780502|r 115 ----------TREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 (954)
Q Consensus 115 ----------AkaYILYRe~Ra~~R~~~~~~~~~~~~~~~l~V~krDG~~e~~d~~ki~~~i~~ac~gL~~v~~~~i~~~ 184 (954)
|=.=||+=+-|++.++.+.-.....++.+.......|-..+-++ ++.+-..|..++|.. ..-
T Consensus 82 r~HF~~~AA~aMRrIL~D~AR~~~~~KRGg~~~~~~l~~~~~~~~~~~~~~L~~-------Ld~aL~~L~~~~Pr~-a~~ 153 (194)
T TIGR02999 82 RRHFFAAAAKAMRRILVDHARRRRAQKRGGGAVRVSLDEVLPDAEADADEELLD-------LDDALDKLAQVDPRQ-AEV 153 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH-------HHHHHHHHHHCCHHH-HHH
T ss_conf 088999999999999999999998741367763355200001357774035999-------999998774006788-998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9730378988899999999999987441877146779
Q gi|254780502|r 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 (954)
Q Consensus 185 ~~~~lydgitt~el~~~li~aA~~Li~~ePdy~~vAa 221 (954)
+.-.+|-|++.+|+-+.|-.+.++ -+-||.+.=|
T Consensus 154 veLr~F~Gl~~~E~A~~L~~S~~T---v~Rdw~~ARa 187 (194)
T TIGR02999 154 VELRFFAGLTVEEIAELLGVSVRT---VERDWRFARA 187 (194)
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHH---HHHHHHHHHH
T ss_conf 853110488989999986888878---9987999999
No 87
>PRK13131 consensus
Probab=35.76 E-value=25 Score=13.89 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=12.1
Q ss_pred HHHCCCCHHHHHHHHHHCCC
Q ss_conf 31000211118899997296
Q gi|254780502|r 653 HRAIGLGLMGFQSALHLLHI 672 (954)
Q Consensus 653 ~R~iGlGv~Glad~L~~~gi 672 (954)
...+-|.+|++...+.+.|+
T Consensus 85 ~~~~pivlM~Y~N~i~~yG~ 104 (257)
T PRK13131 85 NHHIPIGLLAYANLIFSYGV 104 (257)
T ss_pred CCCCCEEEECCHHHHHHHCH
T ss_conf 99988899927689998579
No 88
>PTZ00087 thrombosponding-related protein; Provisional
Probab=35.49 E-value=25 Score=13.86 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=65.0
Q ss_pred ECCCCCHHHHHH------HCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 356788999973------02578730233202320203487999985212874787101144410013443789987787
Q gi|254780502|r 453 ETWHIDVEEFLD------LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 (954)
Q Consensus 453 ~~wH~Di~eFl~------~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~d~~g~~fe~~Y~~~e 526 (954)
|+..|--.|.|. +-+..|. +-+|+....-|.-|++.-+|.--.|.-|.+ ++ |.-.|
T Consensus 157 DV~npSelEIL~~PIkFsi~k~sGs-----FRINi~nfFl~~TWkAF~KdkisFLiKpE~-----nC--------YtiLE 218 (342)
T PTZ00087 157 DVFNPSDFEILEEPIKFSIGKSSGA-----FRININNFFLDGTWKAFTKDKISFLIKPED-----NC--------YTILE 218 (342)
T ss_pred CCCCHHHHHHHCCCEEEEECCCCCE-----EEEEEEEEEECCHHHHHHHCCEEEEECCCC-----CE--------EEHHH
T ss_conf 5688055334237637885155641-----799754101067088864121479973577-----66--------77123
Q ss_pred HHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCC--CCCCEEEECCCCCCCCCCC
Q ss_conf 52104886057786688999999999988288127833112022212--4667034046752001366
Q gi|254780502|r 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNS 592 (954)
Q Consensus 527 ~~~~~~~~~~~k~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p~--~~~g~I~~sNlC~Ei~l~~ 592 (954)
.+........-|+-.--.-|-++-++.+++.+|--+-+-.---.+|. -..|..+-|-||. +||||
T Consensus 219 dKlNKP~LiIEKk~~FYtEWGEWS~CsMeCdHPDNVQIRER~C~~psGdCFKGDLKEsRPC~-vPLPP 285 (342)
T PTZ00087 219 DKINKPQLIIEKKNMFYSEWGEWSNCSMDCDHPDNVQIRERECADPSGDCFKGDLKESRPCI-IPLPP 285 (342)
T ss_pred HCCCCCEEEEEECHHHHHHHHHHHCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 12788618997310145432012127000799975153310044899853256644367763-55896
No 89
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=35.37 E-value=25 Score=13.85 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=8.6
Q ss_pred CCCCCCCCCHHHHHHH
Q ss_conf 4100134437899877
Q gi|254780502|r 509 DLHDLYGKEFEIAYEN 524 (954)
Q Consensus 509 ~L~d~~g~~fe~~Y~~ 524 (954)
.+.|.|+..|.+.+.+
T Consensus 231 n~dD~~~~~f~~~~~~ 246 (494)
T TIGR01085 231 NLDDEYGAQFVKRLPK 246 (494)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 8645446999861025
No 90
>KOG2468 consensus
Probab=35.22 E-value=25 Score=13.83 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHH
Q ss_conf 443111200012787642889
Q gi|254780502|r 406 PVRGLGAHIHGTNGKSQGVIP 426 (954)
Q Consensus 406 ~iR~~Gs~I~g~~G~ssG~v~ 426 (954)
++|=.|+ -|+.+|+..++++
T Consensus 435 ~~RW~~T-kKTlEGT~Afivs 454 (510)
T KOG2468 435 RIRWSGT-KKTLEGTLAFIVS 454 (510)
T ss_pred CEECCCC-CCEEEHHHHHHHH
T ss_conf 0144777-6400001499999
No 91
>KOG1785 consensus
Probab=35.21 E-value=25 Score=13.83 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=13.1
Q ss_pred CEEEEEEEHHH-HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 60577866889-999999999882881278331
Q gi|254780502|r 534 IKVFRKISAVA-LWRKMLTMLFETGHPWITFKD 565 (954)
Q Consensus 534 ~~~~k~i~A~~-l~~~i~~~~~etG~P~i~f~D 565 (954)
+....+|++.. |+..+++.. -+.+.+|-|
T Consensus 303 G~IlQTIP~NKpL~QaL~eG~---keGFYlyPd 332 (563)
T KOG1785 303 GNILQTIPQNKPLFQALLEGH---KEGFYLYPD 332 (563)
T ss_pred CCEEECCCCCCHHHHHHHHCC---CCCEEECCC
T ss_conf 752200678757899997435---353588888
No 92
>KOG3951 consensus
Probab=34.58 E-value=23 Score=14.12 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98510544410124431112000127876428899999
Q gi|254780502|r 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 (954)
Q Consensus 393 isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~ 430 (954)
+..--+|+-+-+..|-|.|+.++++.----|.|..+|.
T Consensus 249 clrvmvGlvILyDHVhp~GAFv~~s~iDmkgcvrllk~ 286 (321)
T KOG3951 249 CLRVMVGLVILYDHVHPNGAFVSNSSIDMKGCVRLLKL 286 (321)
T ss_pred HHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 66342035776302266654033675737889999870
No 93
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1; InterPro: IPR005874 Cells have evolved elaborate mechanisms to rid themselves of aberrant proteins and transcripts. The nonsense-mediated mRNA decay pathway (NMD) is an example of a pathway that eliminates aberrant mRNAs. In addition to its role in recognition of the AUG codon during translation initiation and maintenance of the appropriate reading frame during translation elongation by directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met, the SUI1 protein plays a role in the NMD pathway.; GO: 0003743 translation initiation factor activity, 0006412 translation.
Probab=34.56 E-value=26 Score=13.76 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=25.6
Q ss_pred CCCEEEECCCCC---------CCCCHHHHHHHHHHHHHH
Q ss_conf 164698028973---------224867999999999987
Q gi|254780502|r 27 KGVQVIKRNGGV---------TSFDPSKISRAIMKAFMA 56 (954)
Q Consensus 27 ~~m~ViKRnG~v---------v~Fd~~KI~~AI~KAFla 56 (954)
-+.||.=||||- ..||--||-.|++|-|.=
T Consensus 29 iHIR~QQRNGRK~lTTVQGl~~~yd~kk~vk~LKK~f~C 67 (111)
T TIGR01160 29 IHIRIQQRNGRKTLTTVQGLDKEYDLKKIVKALKKEFAC 67 (111)
T ss_pred EEEEEEECCCCEEEEEECCCHHHHCHHHHHHHHHHHHCC
T ss_conf 466543017960002414841230102478775254237
No 94
>pfam08575 DUF1763 Domain of unknown function (DUF1763). This domain is found in fungi and has no known function.
Probab=33.96 E-value=26 Score=13.69 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=13.3
Q ss_pred ECCCCEECCCHHHHHHHHHHHH
Q ss_conf 0599760259899999999985
Q gi|254780502|r 149 MDDGTLISFNSKRLEMIVEEAC 170 (954)
Q Consensus 149 krDG~~e~~d~~ki~~~i~~ac 170 (954)
-|||+-..||+++|.+.+.++-
T Consensus 37 FR~~s~~~f~p~ri~nT~~FL~ 58 (78)
T pfam08575 37 FRSGSGSDFDPERISNTVEFLE 58 (78)
T ss_pred HHCCCCCCCCHHHHHHHHHHHH
T ss_conf 8669824269999999999999
No 95
>pfam04859 DUF641 Plant protein of unknown function (DUF641). Plant protein of unknown function.
Probab=33.22 E-value=22 Score=14.32 Aligned_cols=11 Identities=45% Similarity=0.869 Sum_probs=5.1
Q ss_pred CCCCHHHHHHH
Q ss_conf 22486799999
Q gi|254780502|r 39 TSFDPSKISRA 49 (954)
Q Consensus 39 v~Fd~~KI~~A 49 (954)
+||||+||..|
T Consensus 39 ~Pyd~d~I~aA 49 (134)
T pfam04859 39 SPYDPEKIQAA 49 (134)
T ss_pred CCCCHHHHHHH
T ss_conf 99987999987
No 96
>TIGR02456 treS_nterm trehalose synthase; InterPro: IPR012810 Trehalose synthase interconverts maltose and alpha,alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor . More information about this protein can be found at Protein of the Month: alpha-Amylase .; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process.
Probab=32.68 E-value=26 Score=13.73 Aligned_cols=101 Identities=22% Similarity=0.376 Sum_probs=64.4
Q ss_pred HHHHHHHCCCC-CCCCHHH-----------------------------HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999743303-5861122-----------------------------21002222321102547664135899998999
Q gi|254780502|r 342 FYNLLSSFHFM-CSTPTLF-----------------------------NSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 (954)
Q Consensus 342 ~Y~~ls~~~~~-~atPtl~-----------------------------Nagt~~~qlsSCfl~~v~Dsl~~I~~~~~~~a 391 (954)
-+++|..+-++ |.||+|. |||=...+.+.||+-+|.|-.-| |..++=.|
T Consensus 362 ~iELl~aLLLsLpGsPilYYGDEIGMGDNi~LGDRdgVRTPMQWs~DRnaGFS~Adp~~LflP~v~dp~Yg-y~~VNVEA 440 (560)
T TIGR02456 362 RIELLTALLLSLPGSPILYYGDEIGMGDNIWLGDRDGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYG-YQAVNVEA 440 (560)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEE
T ss_conf 99999999996389978876752036787788887776688777876560024167465215733588877-61132234
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 9985105444101244311120001278764288999999899999740466677247898356788999973025787
Q gi|254780502|r 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 (954)
Q Consensus 392 ~isk~ggGiG~~~s~iR~~Gs~I~g~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~wH~Di~eFl~~k~n~G 470 (954)
++. .++-.+.|++-+=..=.--++. ==||+ +-.|+.-|+=|..||+.=.++|
T Consensus 441 ql~-------------------------~~~SLL~W~rr~l~vR~~~~~~-FGrGs-l~~l~~~N~~vLAy~R~y~~~G 492 (560)
T TIGR02456 441 QLR-------------------------DPSSLLHWTRRVLEVRKKAHPA-FGRGS-LTFLETGNRRVLAYLREYEGSG 492 (560)
T ss_pred EEC-------------------------CCCHHHHHHHHHHHHHHHCCHH-HCCCC-EEEECCCCCEEEEEEECCCCCC
T ss_conf 433-------------------------7700489999999988630101-02563-3431688823542443168888
No 97
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.36 E-value=28 Score=13.51 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=16.9
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf 4331000211118899997296323
Q gi|254780502|r 651 HTHRAIGLGLMGFQSALHLLHIPYA 675 (954)
Q Consensus 651 ~~~R~iGlGv~Glad~L~~~gi~Y~ 675 (954)
+.+.+||-|+.+|+.+|..-+-++.
T Consensus 48 kEyqkiG~af~~Ls~af~~d~~~~s 72 (207)
T cd07670 48 KEYQKVGQSFKGLSQAFELDQQAFS 72 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8999999999999999805887676
No 98
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=32.19 E-value=24 Score=13.97 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHCCCCC-CCHHHHHH-HHHHHHH
Q ss_conf 021111889999729632-33788999-9999999
Q gi|254780502|r 657 GLGLMGFQSALHLLHIPY-ASPEAVEI-ADESMEF 689 (954)
Q Consensus 657 GlGv~Glad~L~~~gi~Y-~S~ea~~~-~~~i~e~ 689 (954)
|+|++|+|..|..+|.+= +|+-+... ..+.-+.
T Consensus 9 G~GMSglA~~L~~~G~~VsGSD~~~~~y~t~~L~~ 43 (491)
T TIGR01082 9 GIGMSGLAEILLNRGYKVSGSDIAENAYTTKRLEA 43 (491)
T ss_pred HHCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 20344899999857890877203356315899986
No 99
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=32.10 E-value=17 Score=15.16 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC-----------CCCCHHHHHHHHHHH
Q ss_conf 675200136654433211125540686254344798885589999999976531-----------121000188888644
Q gi|254780502|r 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-----------DINCHTIEKAKKSNH 651 (954)
Q Consensus 583 NlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVI-----------d~n~yp~~~~~~~~~ 651 (954)
--|.|.+. +| =|-|||=||. +||++ +++-|...=-+|+ ++|.|-+++.. +
T Consensus 211 EkaAEvAE----Ge--R~lLASAnLd-------lDy~k---ia~AA~ky~H~VLsW~~mD~N~qktLNRyLlk~gl---~ 271 (401)
T TIGR00381 211 EKAAEVAE----GE--RCLLASANLD-------LDYKK---IANAALKYDHVVLSWAIMDINMQKTLNRYLLKRGL---K 271 (401)
T ss_pred HHHHHHCC----CC--HHHHHHCCCC-------CCHHH---HHHHHHHCCCEEEEHHHCCCCHHHHHHHHHHHHHC---C
T ss_conf 98843113----62--1645413513-------45789---99998534980776111280014467699998414---8
Q ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 331000211118899997296323378899999999998577999789875311778876678
Q gi|254780502|r 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 (954)
Q Consensus 652 ~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS 714 (954)
+.|+|=.=-+-- .|| |+ ++|+-..|+.+...+++--.+| .||.-.|+
T Consensus 272 p~dsIVMDPTTc-----ALG--YG----iefsi~~m~R~Rl~gLKGD~dl-----nmP~SSGT 318 (401)
T TIGR00381 272 PRDSIVMDPTTC-----ALG--YG----IEFSIDAMERIRLSGLKGDEDL-----NMPMSSGT 318 (401)
T ss_pred CCCCEECCCCHH-----HHH--CC----HHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCC
T ss_conf 677451274043-----453--14----8899989998875313686303-----67666541
No 100
>KOG0149 consensus
Probab=31.25 E-value=25 Score=13.83 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=23.7
Q ss_pred HCCCEEEEECHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28812783311202221246670340467520013665443321112554
Q gi|254780502|r 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 (954)
Q Consensus 556 tG~P~i~f~D~~N~~~p~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~Si 605 (954)
-|-.+++|+|..-....++. .| |.=++..+-|||+|+
T Consensus 54 kGyGfVTf~d~~aa~rAc~d------p~-------piIdGR~aNcnlA~l 90 (247)
T KOG0149 54 KGYGFVTFRDAEAATRACKD------PN-------PIIDGRKANCNLASL 90 (247)
T ss_pred CCEEEEEEECHHHHHHHHCC------CC-------CCCCCCCCCCCHHHH
T ss_conf 32456886158888887548------98-------722364025211110
No 101
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=30.78 E-value=23 Score=14.13 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCC
Q ss_conf 11118899997296323378899999999998577999789875311778876678121387624466300552253345
Q gi|254780502|r 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 (954)
Q Consensus 659 Gv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~ 738 (954)
+|-|--|=..-.| ..+.|..++..|-|.+.-+-..-++ |.|..|.||+|.+-++|
T Consensus 344 tvEGEnDDISg~G---QTkAA~~LC~nIpe~~k~hy~qp~v------GHYGVFnGsrfr~eI~P---------------- 398 (415)
T COG4553 344 TVEGENDDISGVG---QTKAAHDLCSNIPEDMKQHYMQPDV------GHYGVFNGSRFREEIVP---------------- 398 (415)
T ss_pred EEECCCCCCCCCC---HHHHHHHHHHCCCHHHHHHHCCCCC------CCCCEECCCHHHHHHHH----------------
T ss_conf 8504555443434---1388888885483778887517887------63201435057888888----------------
Q ss_pred CCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 4021027289999999841204
Q gi|254780502|r 739 NRTSRLPWDELKKRVKTIGMRN 760 (954)
Q Consensus 739 ~~~~~~dW~~Lr~~i~~~G~RN 760 (954)
.+++-|.+|+.-|
T Consensus 399 ---------ri~dFi~~~d~~~ 411 (415)
T COG4553 399 ---------RIRDFIRRYDRSN 411 (415)
T ss_pred ---------HHHHHHHHHCCCC
T ss_conf ---------9999999738224
No 102
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=29.42 E-value=28 Score=13.50 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=19.4
Q ss_pred HCCCCCCCCCEEEECC--CCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0222124667034046--752001366544332111255406862
Q gi|254780502|r 568 NIRSPQQHVGVVHSSN--LCTEITLNSSSEETAVCNLGSINLLAH 610 (954)
Q Consensus 568 N~~~p~~~~g~I~~sN--lC~Ei~l~~~~~e~~vCnL~SiNL~~~ 610 (954)
|++|.-++--+|+-|| ..+-|....-.++..+|---|-.|.+|
T Consensus 42 nKyntpKyRlVVR~TN~~iicQiv~a~~~GD~v~~aA~s~EL~ky 86 (300)
T PTZ00069 42 NKYNSPKYRLVVRITNKDIICQIVYAKIVGDKVVAAAYSHELPRF 86 (300)
T ss_pred CCCCCCCCEEEEEEECCEEEEEEEEECCCCCEEEEEEECCHHHHC
T ss_conf 235898744999987782899999850689899998511204235
No 103
>KOG4375 consensus
Probab=29.28 E-value=31 Score=13.20 Aligned_cols=65 Identities=15% Similarity=-0.036 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 67520013665443321112554068625434479888558999999997653112100018888864433100021111
Q gi|254780502|r 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 (954)
Q Consensus 583 NlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~G 662 (954)
|+|++++.-+.+= ..+-+.+-.||-+.-+..+.--+|+|+=||....|. - .+.+-+||||+-
T Consensus 195 s~~s~~pF~~Kpl------------~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~--l----~k~df~~LGVTR 256 (272)
T KOG4375 195 NNLTYNPFLCKPL------------QRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPL--L----RKLDFRGLGVTR 256 (272)
T ss_pred CCCCCCCCCCCCC------------CEECCCCHHHHHHHHHHHHCCHHHHHCCCCCCHHHH--C----CHHHHHCCCCHH
T ss_conf 7777785433433------------212256577777752000010566505556511021--0----434432235122
Q ss_pred HHH
Q ss_conf 889
Q gi|254780502|r 663 FQS 665 (954)
Q Consensus 663 lad 665 (954)
.++
T Consensus 257 VgH 259 (272)
T KOG4375 257 VGH 259 (272)
T ss_pred HHH
T ss_conf 446
No 104
>pfam02186 TFIIE_beta TFIIE beta subunit core domain. General transcription factor TFIIE consists of two subunits, TFIIE alpha pfam02002 and TFIIE beta. TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The structure of the DNA binding core region has been solved and has a winged helix fold.
Probab=28.47 E-value=32 Score=13.06 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=15.9
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999850667898521145489999998612
Q gi|254780502|r 80 VTRLLQHNKSALIVHIEDIQDQVECSLMQSG 110 (954)
Q Consensus 80 v~~i~~~~~~~~~~~VE~IQD~VE~~LM~~g 110 (954)
|+-+..| +.+++||+|||.- . |.-|
T Consensus 11 VeymK~r---~~PltleeIld~l--s-ldi~ 35 (65)
T pfam02186 11 VEYMKER---DHPLTVEEILDYL--S-LDIG 35 (65)
T ss_pred HHHHHHC---CCCCCHHHHHHHH--C-CCCC
T ss_conf 9999944---9974799999997--4-6845
No 105
>KOG1464 consensus
Probab=28.45 E-value=26 Score=13.78 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89888999999999999874-4-187714677999999999986210033310110446777547888998665576778
Q gi|254780502|r 191 DGLSESDLETALIFSSRTLI-E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 (954)
Q Consensus 191 dgitt~el~~~li~aA~~Li-~-~ePdy~~vAaRlll~~l~kev~~~~~~~~~~~~~~~~~~~y~~~f~~~i~~G~~~~~ 268 (954)
.|+...+...++.--...|- + ...+|++-|-..++.--++ ...+.+|-..|.+. -.||+.++-.
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-----------l~~~~eMm~~Y~ql-LTYIkSAVTr-- 101 (440)
T KOG1464 36 KGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-----------LGNYKEMMERYKQL-LTYIKSAVTR-- 101 (440)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHH-HHHHHHHHHC--
T ss_conf 244436879999999999941664342679999988877750-----------46679999999999-9999999850--
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 77775177399999764121
Q gi|254780502|r 269 LHESMMDFDLVYLANDLKYE 288 (954)
Q Consensus 269 i~~~l~~~dl~~L~~~Id~~ 288 (954)
+|++-.++-+-.+|-.+
T Consensus 102 ---NySEKsIN~IlDyiStS 118 (440)
T KOG1464 102 ---NYSEKSINSILDYISTS 118 (440)
T ss_pred ---CCCHHHHHHHHHHHHHH
T ss_conf ---42077799999998641
No 106
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=28.43 E-value=32 Score=13.05 Aligned_cols=72 Identities=29% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHCCCC-C----CCCCCCCC---C-CCCHHHHHHHHHHHHHHH---------HHCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 222100222-2----32110254---7-664135899998999998---------510544410-124431112000127
Q gi|254780502|r 358 LFNSGTRHP-Q----LSSCFLTT---V-PDDLYGIFGALQENAMLA---------KYSGGLGND-WTPVRGLGAHIHGTN 418 (954)
Q Consensus 358 l~Nagt~~~-q----lsSCfl~~---v-~Dsl~~I~~~~~~~a~is---------k~ggGiG~~-~s~iR~~Gs~I~g~~ 418 (954)
..|.||..+ . -++|++|. | .|..-|=.=.+.+.|.|. -.||+++++ |.+| ++.+.|.|..
T Consensus 90 Ti~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRI-G~~aMigG~s 168 (257)
T TIGR01852 90 TINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRI-GRYAMIGGLS 168 (257)
T ss_pred EECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEE-HHHHHHHHHC
T ss_conf 850662588888998887657205356124368881698136312227998889997789721101330-0023221200
Q ss_pred CCCCCHHHHHHH
Q ss_conf 876428899999
Q gi|254780502|r 419 GKSQGVIPFLKV 430 (954)
Q Consensus 419 G~ssG~v~flk~ 430 (954)
+.+.=++||+=+
T Consensus 169 ~v~~DvpPY~~~ 180 (257)
T TIGR01852 169 AVSKDVPPYGLV 180 (257)
T ss_pred CCCCCCCCCEEE
T ss_conf 246787761786
No 107
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=28.29 E-value=4.9 Score=19.11 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHCC-CCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHHHCCCHHHCCCHHHHHHHHCCCCE
Q ss_conf 9998999997404-6667724789835678899997302578730233202320203487999985212874
Q gi|254780502|r 429 KVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 (954)
Q Consensus 429 k~~n~~~~~v~Qg-G~RrGA~~~~l~~wH~Di~eFl~~k~n~G~~~~r~~~~~~av~i~D~Fm~~v~~~~~w 499 (954)
+|++-....++|. |.|=-- .--.++||||+- |.++...+| -..|+++-|+|-+--+.++-|
T Consensus 365 ~Vl~GlF~~~~rLfGI~~~e-~~~~~vwHpDVr-~~~v~d~~g--------~~~g~fY~DlyaR~~KrgGAW 426 (683)
T COG0339 365 KVLEGLFEVAKRLFGITFVE-RKDIPVWHPDVR-VFEVFDENG--------ELIGLFYLDLYARDGKRGGAW 426 (683)
T ss_pred HHHHHHHHHHHHHCCEEEEE-CCCCCCCCCCCE-EEEEECCCC--------CEEEEEEEECCCCCCCCCCHH
T ss_conf 89999999999870737787-799976689822-898884899--------778899842366788866217
No 108
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=27.73 E-value=33 Score=12.97 Aligned_cols=17 Identities=12% Similarity=0.567 Sum_probs=8.9
Q ss_pred CEEEECCCCCCCCCHHH
Q ss_conf 46980289732248679
Q gi|254780502|r 29 VQVIKRNGGVTSFDPSK 45 (954)
Q Consensus 29 m~ViKRnG~vv~Fd~~K 45 (954)
|+++=|||+|+.+|+.+
T Consensus 1 m~ilIkng~vvT~d~~~ 17 (445)
T PRK07228 1 MTILIKNGTIVTMNAKR 17 (445)
T ss_pred CEEEEECCEEEEECCCC
T ss_conf 91999898999858997
No 109
>PRK13912 nuclease NucT; Provisional
Probab=26.29 E-value=34 Score=12.86 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=17.0
Q ss_pred HHHHCCHHCCCEEEEEEC--CCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 985206300523204754--8999899999999999729867
Q gi|254780502|r 860 ASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKT 899 (954)
Q Consensus 860 ~a~~Q~~IDqsiS~tl~~--~~~t~~~i~~~y~~Aw~~GlKt 899 (954)
....-+-||+|++ .+.+ -..|-.++.+....|.+.|+|=
T Consensus 38 ~~~Ii~~Id~Ak~-sIdIA~YsFT~~~Ia~AL~~A~kRGV~V 78 (180)
T PRK13912 38 LNSLVSGISNANS-EIKIAIYSFTHKDIAKALKSAAKRGVKV 78 (180)
T ss_pred HHHHHHHHHHHHH-HHEEEEEECCCHHHHHHHHHHHHCCCEE
T ss_conf 9999999999887-1269999846889999999999689889
No 110
>pfam09019 EcoRII-C EcoRII C terminal. The C-terminal catalytic domain of the Restriction Endonuclease EcoRII has a restriction endonuclease-like fold with a central five-stranded mixed beta-sheet surrounded on both sides by alpha-helices. It cleaves DNA specifically at single 5' CCWGG sites.
Probab=26.13 E-value=35 Score=12.77 Aligned_cols=97 Identities=16% Similarity=0.369 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CC-CHHHCCCCCHH
Q ss_conf 644331000211-118899997296323378899999999998577999789875311778876--67-81213876244
Q gi|254780502|r 649 SNHTHRAIGLGL-MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF--KG-SLWDQGVFPID 724 (954)
Q Consensus 649 ~~~~~R~iGlGv-~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f--~g-S~~~~G~~~~d 724 (954)
+|.|.-+-|--. .-+..+|...||+|++..- -|.|.-|.| ++ ..|..-.||.+
T Consensus 31 ~nrRKSRaGkslE~hle~if~~~gi~f~~q~~-----------------------TE~~kkpDFlfPs~~~Y~d~~fp~~ 87 (164)
T pfam09019 31 QNRRKSRAGKSLENHLEEIFTAAGLPFETQAV-----------------------TENGKKPDFLFPGVAAYHDPAFPAE 87 (164)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC-----------------------CCCCCCCCEECCCHHHHCCCCCCHH
T ss_conf 76655202143899999999975984021301-----------------------3689989724787988748878835
Q ss_pred HHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
Q ss_conf 66300552253345402102728999999984120443011077436877838
Q gi|254780502|r 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 (954)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g 777 (954)
..- -+....+.+..|.++.+.+.+ +..-||.++-|.-|..++..
T Consensus 88 ~l~-------mLaaKTTcKdRWrQVl~Ea~R--i~~khL~TL~~gIS~~q~~e 131 (164)
T pfam09019 88 NLR-------MLAAKTTCKDRWRQVLNEADR--IRRKHLFTLQPGISENQTNE 131 (164)
T ss_pred HEE-------EEHHCCCHHHHHHHHHHHHHH--HHHHHEEECCCCCCHHHHHH
T ss_conf 603-------001014088999999999864--21231454277778889999
No 111
>pfam10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein. The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with family PX, pfam00787.13, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex.
Probab=26.06 E-value=35 Score=12.76 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=43.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 34046752001366544332111255406862543447988855899999999765311210001888886443310002
Q gi|254780502|r 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 (954)
Q Consensus 579 I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~~R~iGl 658 (954)
....|-|.-|-.|+. ++|-...+..-+ -.|..|-+.-..+|++|-+|. +.+.-.-+.---+.+.+||-
T Consensus 17 ~vG~~Ff~~i~~p~~------~~ld~~~VE~~~----d~f~~F~~~md~svk~l~~~~--~e~~kk~~~~~kkEyqkiG~ 84 (237)
T pfam10456 17 LVGANFFLTIEVPEA------PPLDLQEVEQKV----EGFKRFTKKMDEGVKVLLTVG--NEFWKKCAGPFKKEYQKIGK 84 (237)
T ss_pred CCCHHHEEEEECCCC------CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 545010464468999------998889999998----899999998999999999999--99999872034389999999
Q ss_pred CHHHHHHHHHHCCCCCCC
Q ss_conf 111188999972963233
Q gi|254780502|r 659 GLMGFQSALHLLHIPYAS 676 (954)
Q Consensus 659 Gv~Glad~L~~~gi~Y~S 676 (954)
++.+|..+|..-+-++.+
T Consensus 85 af~~Ls~afe~d~~~~~~ 102 (237)
T pfam10456 85 AFQLLSQAFEMDGYVGSA 102 (237)
T ss_pred HHHHHHHHHHCCCCCCCH
T ss_conf 999999998058875667
No 112
>KOG4287 consensus
Probab=25.98 E-value=35 Score=12.75 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=18.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHCCCCC--CCCCCHHEEEEE
Q ss_conf 41204430110774368778388988--475601203453
Q gi|254780502|r 756 IGMRNSNCMAIAPTATIANICGVSQS--IDPSYQNLYVKS 793 (954)
Q Consensus 756 ~G~RNs~l~aiAPT~t~S~i~g~s~g--IEP~~a~~y~r~ 793 (954)
+|.|++.+.|+.+-.+. +..| |.|-|++...++
T Consensus 318 qgFr~~ml~a~~~f~~~-----~~~g~finsc~aHCq~~~ 352 (402)
T KOG4287 318 QGFRPQMLDAVKIFSSS-----KQNGLFINSCFAHCQTER 352 (402)
T ss_pred HHHHHHHHHHHHHHEEC-----CCCCEEECHHHHHHCCCC
T ss_conf 88899999986664336-----668736325887641433
No 113
>pfam10660 MitoNEET_N Iron-containing outer mitochondrial membrane protein N-terminus. MitoNEET_N is the N-terminal region of the MitoNEET and Miner-type proteins that carry a zf-CDGSH, pfam09360, redox-active 2Fe-2S cluster. The whole protein regulates oxidative capacity. The domain is an anchor sequence that tethers the protein to the outer membrane.
Probab=25.83 E-value=19 Score=14.77 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHH-HHHHHHHHHHHC---CCCCC
Q ss_conf 547664135899-998999998510---54441
Q gi|254780502|r 374 TTVPDDLYGIFG-ALQENAMLAKYS---GGLGN 402 (954)
Q Consensus 374 ~~v~Dsl~~I~~-~~~~~a~isk~g---gGiG~ 402 (954)
+++|||+.|+|+ +.+|--.+.-.+ ||+|+
T Consensus 19 LPiPdS~gG~frL~~kdwl~L~p~~~~~~~lgY 51 (64)
T pfam10660 19 LPIPKSFGGIFRLSVKEWLALVPFVAATAALGY 51 (64)
T ss_pred CCCCCCCCCCEECCHHHHHHHCCHHHHHHHHHH
T ss_conf 999733121203268788876327889888877
No 114
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=25.74 E-value=36 Score=12.72 Aligned_cols=11 Identities=27% Similarity=0.102 Sum_probs=5.4
Q ss_pred CCCHHHHHHHC
Q ss_conf 78899997302
Q gi|254780502|r 456 HIDVEEFLDLR 466 (954)
Q Consensus 456 H~Di~eFl~~k 466 (954)
.|.+.+-|..+
T Consensus 42 N~~vv~~L~~~ 52 (304)
T PRK01045 42 NKYVVERLKKK 52 (304)
T ss_pred CHHHHHHHHHC
T ss_conf 98999999988
No 115
>PRK07748 sporulation inhibitor KapD; Provisional
Probab=25.40 E-value=36 Score=12.67 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 111889999729632337889999999
Q gi|254780502|r 660 LMGFQSALHLLHIPYASPEAVEIADES 686 (954)
Q Consensus 660 v~Glad~L~~~gi~Y~S~ea~~~~~~i 686 (954)
..||..||..+||+++...++.+.|..
T Consensus 141 ~~gL~~aL~~lgl~~eG~~H~glDDA~ 167 (205)
T PRK07748 141 QTGLWKAIEEYGKEGTGKHHCALDDAM 167 (205)
T ss_pred CCCHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 768999999769988898637589999
No 116
>pfam09630 DUF2024 Domain of unknown function (DUF2024). This protein of 86 residues is expressed in bacteria. It consists of four alpha helices and two beta strands. Its function is unknown. One UniProt entry gives the gene name as Traf5.
Probab=25.38 E-value=36 Score=12.67 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=40.9
Q ss_pred EEEECCCCCCCCC----HHHHHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 6980289732248----67999999999--98704877643210799999999999999985066789852114548999
Q gi|254780502|r 30 QVIKRNGGVTSFD----PSKISRAIMKA--FMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVE 103 (954)
Q Consensus 30 ~ViKRnG~vv~Fd----~~KI~~AI~KA--Flav~~~~~~~s~~~~~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE 103 (954)
-|.++||...-|| ..-...|+..| ||..-|...+ .+++ +++ ..-|.|.--+-||
T Consensus 9 yV~~~dG~~mHFDVlv~~~d~~~a~~yak~~L~~ig~~~~----------~vt~-------~~C---~FCHsE~A~~~V~ 68 (81)
T pfam09630 9 YVKTKDGQTMHFDVLVDEKNHEKAIEYAKEYLKSIGIEGA----------DITQ-------KEC---RFCHSEKAPEEVE 68 (81)
T ss_pred EEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCC----------CCCC-------CCC---CCCCCCCCCHHHH
T ss_conf 7981699889999984797779999999999998275788----------6401-------206---5545766998999
Q ss_pred HHHHHCCCH
Q ss_conf 999861208
Q gi|254780502|r 104 CSLMQSGHH 112 (954)
Q Consensus 104 ~~LM~~g~~ 112 (954)
.+...+||+
T Consensus 69 ~~I~~~Gy~ 77 (81)
T pfam09630 69 EAIKENGYY 77 (81)
T ss_pred HHHHHCCEE
T ss_conf 999859878
No 117
>PTZ00315 2'-phosphotransferase; Provisional
Probab=25.06 E-value=37 Score=12.63 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=43.4
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHCC---------CCHHHHHHHHHHCCCCCCC--
Q ss_conf 2543447988855899999999765311210001888886443--31000---------2111188999972963233--
Q gi|254780502|r 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT--HRAIG---------LGLMGFQSALHLLHIPYAS-- 676 (954)
Q Consensus 610 ~v~~~~~D~~~l~~~v~~avr~LDnVId~n~yp~~~~~~~~~~--~R~iG---------lGv~Glad~L~~~gi~Y~S-- 676 (954)
||..|.+|... -+-..++..--+.+.-.+|.-..+-.|.+ +..++ .+..|+-|||..+||++..
T Consensus 157 ~VTcGdwDLKt---mlp~Qc~~~~~~g~~i~vP~~f~rW~NlKk~~~~~~~~~~~~~ps~~p~~m~dML~~L~Lp~~GRh 233 (570)
T PTZ00315 157 VVTCGDWDLKT---MLPAQMRVSGQQGTTVNVPLSFRRWCNLKKYMSQLSGCGLGATPPLGISDLPDMLQMLGLPLKGRH 233 (570)
T ss_pred EEECCCCHHHH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 99617606877---759998886504764237689999988999998722666666766687557999986699867875
Q ss_pred ----HHHHHHHHHHHHHHH
Q ss_conf ----788999999999985
Q gi|254780502|r 677 ----PEAVEIADESMEFIS 691 (954)
Q Consensus 677 ----~ea~~~~~~i~e~i~ 691 (954)
++.+..+.-+.|.|.
T Consensus 234 HSGIDDcRNIA~IL~ELlR 252 (570)
T PTZ00315 234 HSGIDDCRNIAAVLCELLR 252 (570)
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 7885136889999999996
No 118
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=24.75 E-value=25 Score=13.86 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1000188888644331000211118899997296323378899999999998577999789
Q gi|254780502|r 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 (954)
Q Consensus 639 n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~ 699 (954)
.||.+|..-..|.++|.||.|..=+-.-=.. --.++++.-.+|..++.|.++...+-|-+
T Consensus 327 sFyslp~t~i~n~kykdiq~gYLYYya~d~~-~kd~~~~a~~a~~~r~~e~v~Da~ilak~ 386 (451)
T COG5092 327 SFYSLPFTTIENKKYKDIQGGYLYYYAGDDQ-FKDFDPKATKALKTRVAEMVGDAMILAKV 386 (451)
T ss_pred EEEECCCEEECCCCCCCCCEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7885140232586544233268999716765-33368678899999999998889998877
No 119
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=24.38 E-value=38 Score=12.54 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=12.6
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 43310002111188999972963
Q gi|254780502|r 651 HTHRAIGLGLMGFQSALHLLHIP 673 (954)
Q Consensus 651 ~~~R~iGlGv~Glad~L~~~gi~ 673 (954)
+.+.+||-|+.+|+.+|..-+-+
T Consensus 40 kEyqkiG~af~~Ls~af~~d~~~ 62 (199)
T cd07626 40 KEYQKIGQAFTSLGTAFELDETP 62 (199)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999999997369876
No 120
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.35 E-value=38 Score=12.54 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 72899999998412044
Q gi|254780502|r 745 PWDELKKRVKTIGMRNS 761 (954)
Q Consensus 745 dW~~Lr~~i~~~G~RNs 761 (954)
-|.++.+.++++|+||=
T Consensus 25 vWPE~~a~lk~agi~nY 41 (105)
T COG3254 25 VWPELLALLKEAGIRNY 41 (105)
T ss_pred CCHHHHHHHHHCCCCEE
T ss_conf 36899999998498503
No 121
>KOG1885 consensus
Probab=24.32 E-value=35 Score=12.79 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHCC--CCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 0774368778388--98847560120345326761366465899989985898689999998519962776448867886
Q gi|254780502|r 766 IAPTATIANICGV--SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 (954)
Q Consensus 766 iAPT~t~S~i~g~--s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ip~~~k~ 843 (954)
..|+-|+|.+.+- -.=+||. -+||.|+- ..+++..-+..++.|.+++. +--+
T Consensus 415 ~p~p~t~arlLdKLvg~flE~~---------------cvnPTFi~-------~hP~imSPLAK~hrs~~glt----eRFE 468 (560)
T KOG1885 415 CPPPRTTARLLDKLVGEFLEPT---------------CVNPTFII-------DHPQIMSPLAKYHRSKAGLT----ERFE 468 (560)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC---------------CCCCEEEC-------CCCHHCCCCCCCCCCCCCHH----HHHH
T ss_conf 8983108999999876764103---------------57970672-------78133184222456540045----6778
Q ss_pred HCCCHHCCCH--HHHHHHHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5052220688--999999985206300523204754899989999999999972986
Q gi|254780502|r 844 IHATAFEIDP--MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 (954)
Q Consensus 844 ~f~ta~ei~~--~~~i~~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~GlK 898 (954)
+|....||.- ...=+-...||+|-.|++-+..-- | ...-+++-|..|-+.||-
T Consensus 469 lFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GD-D-Ea~~~De~Fc~ALEYGlP 523 (560)
T KOG1885 469 LFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGD-D-EAQMVDEDFCTALEYGLP 523 (560)
T ss_pred HHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-C-CCCCCCHHHHHHHHCCCC
T ss_conf 754108875466660688999999999987764498-3-113652878889770799
No 122
>pfam03500 Cellsynth_D Cellulose synthase subunit D.
Probab=24.32 E-value=38 Score=12.53 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEEC--CCCCEEEECHHHHHHHHHCCCCCHHHHHH
Q ss_conf 2899999998412044301107743687783889884756012034532--67613664658999899858986899999
Q gi|254780502|r 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN--MSGDFTVVNSFLVNELKQRDLWDEAMISD 823 (954)
Q Consensus 746 W~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~--~~G~~~~vn~~l~~~l~~~g~~~~~~~~~ 823 (954)
=++||..+.+-|.|-+.---..|-.||.-+...=+.+--.+.+-|++-. ...+...+..+....+..-|
T Consensus 18 ~~elr~LM~rvG~r~A~r~PlP~c~T~adLe~~LNaiw~~mdWG~V~lel~~e~~~LrIvH~~aP~l~AfG--------- 88 (144)
T pfam03500 18 IEVRNDLLREVGRGMAGRIQPPLCNTIDKLQIELNALLALIGWGTVKLELLAEDQALRIVHEDLPQVGSAG--------- 88 (144)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCHHCC---------
T ss_conf 99999999999788886479996455999999999999987774477552367663578761573001137---------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCHHCCCHHHHHHHHHHHCCHH-CCCEEEEEEC--CCCCHHHHHHHHHHHHHCCCCE-
Q ss_conf 98519962776448867886505222068899999998520630-0523204754--8999899999999999729867-
Q gi|254780502|r 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI-DQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKT- 899 (954)
Q Consensus 824 i~~~~Gsv~~i~~ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~I-DqsiS~tl~~--~~~t~~~i~~~y~~Aw~~GlKt- 899 (954)
.++ ..+.|+ -..+.-|.|+ .|+=..-+++ .+...+|++.+-. .|
T Consensus 89 ----e~a---~~W~~a------------------fLEG~Yq~WLts~~Ga~g~~vv~~~~~~ed~~~~~~-------~~~ 136 (144)
T pfam03500 89 ----EPS---GTWLAP------------------VLEGLYGRWITSQAGAFGDYVVTRDVDAEDLNAVPR-------QTI 136 (144)
T ss_pred ----CCC---CCCCHH------------------HHHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCC-------CEE
T ss_conf ----865---454289------------------998788888874125676468861564665113450-------216
Q ss_pred EEEECCCC
Q ss_conf 97965884
Q gi|254780502|r 900 TYYLRSRS 907 (954)
Q Consensus 900 ~yy~R~~s 907 (954)
|-|.|++|
T Consensus 137 ~~~~~~~~ 144 (144)
T pfam03500 137 ILYMRTRS 144 (144)
T ss_pred EEEEEECC
T ss_conf 88877149
No 123
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase; InterPro: IPR006398 These sequences represent 2-hydroxy-3-oxopropionate reductase (1.1.1.60 from EC), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism , .; GO: 0008679 2-hydroxy-3-oxopropionate reductase activity, 0046487 glyoxylate metabolic process.
Probab=23.55 E-value=23 Score=14.08 Aligned_cols=55 Identities=20% Similarity=0.057 Sum_probs=24.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHC------CCCCCHHHHHHCCC-HHHCCCHHHHHHHHCCCCEEE
Q ss_conf 67724789835678899997302------57873023320232-020348799998521287478
Q gi|254780502|r 444 RKGAVCAYLETWHIDVEEFLDLR------KNTGDDRRRTHDMN-TANWIPDLFMKRVTQNAGWTL 501 (954)
Q Consensus 444 RrGA~~~~l~~wH~Di~eFl~~k------~n~G~~~~r~~~~~-~av~i~D~Fm~~v~~~~~w~L 501 (954)
|..=+-+.|=+.-|.+++.+-=- ...|. -.-||+ ++=.-+..|-+++++.+-=+|
T Consensus 54 e~~Dvi~~MvP~sPqVeeva~GenGi~e~ak~G~---~lvDMSSI~P~~s~~~a~a~k~kGid~L 115 (291)
T TIGR01505 54 EDADVIVTMVPDSPQVEEVAFGENGILEAAKKGK---VLVDMSSIAPLESKELAKAVKEKGIDVL 115 (291)
T ss_pred HHCCEEEEECCCCCCEEEEEECCCCCCCCCCCCC---EEEECCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 7489799843876970156556875212568887---7887056782668999999997288452
No 124
>TIGR02530 flg_new flagellar operon protein; InterPro: IPR013367 Proteins in this entry are encoded in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function of this protein is unknown..
Probab=23.29 E-value=33 Score=13.03 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHCCHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCE-EEEECCCC
Q ss_conf 06889999999852063005232047548999899999999999729867-97965884
Q gi|254780502|r 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 (954)
Q Consensus 850 ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~~t~~~i~~~y~~Aw~~GlKt-~yy~R~~s 907 (954)
-++-..+-||-++ |+.+++...++|.+--..|-++|+|- +=.+.+.+
T Consensus 33 K~SkHA~eRm~~R-----------nI~i~~~~~~k~~e~v~~A~~KG~kDsLIl~~d~A 80 (113)
T TIGR02530 33 KLSKHALERMRER-----------NISISPEDWKKLEEAVEEAEKKGVKDSLILMNDAA 80 (113)
T ss_pred EECHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCE
T ss_conf 2326579999857-----------98649888999999999876079965235522851
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=23.25 E-value=25 Score=13.87 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 27876428899999989999974046667724789835
Q gi|254780502|r 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 (954)
Q Consensus 417 ~~G~ssG~v~flk~~n~~~~~v~QgG~RrGA~~~~l~~ 454 (954)
.||+.+|.--.|..+ +....|.+ +.|.-+|+..
T Consensus 119 ~G~~GlGKTHLl~Ai---gn~~~~~~--~~a~v~y~~s 151 (408)
T COG0593 119 YGGVGLGKTHLLQAI---GNEALANG--PNARVVYLTS 151 (408)
T ss_pred ECCCCCCHHHHHHHH---HHHHHHHC--CCCEEEECCH
T ss_conf 879999789999999---99998629--9864885048
No 126
>KOG1149 consensus
Probab=23.15 E-value=40 Score=12.38 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999999987441877146779999999999862
Q gi|254780502|r 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 (954)
Q Consensus 194 tt~el~~~li~aA~~Li~~ePdy~~vAaRlll~~l~kev~ 233 (954)
..++-.++--++|-.|++.-..|--..+-.-+..++|+++
T Consensus 113 ~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~ 152 (524)
T KOG1149 113 EQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSAL 152 (524)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
T ss_conf 4578999999999999865975674158889999988653
No 127
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.99 E-value=40 Score=12.36 Aligned_cols=47 Identities=32% Similarity=0.410 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCC
Q ss_conf 751773999997641210112898999999997621148927538899999999654164
Q gi|254780502|r 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK 331 (954)
Q Consensus 272 ~l~~~dl~~L~~~Id~~RD~~F~Y~Gl~tL~~rYllk~~~~~~E~pQ~~~mrVA~~la~~ 331 (954)
+++.+|...++.+| +|+.|+.|.+|||-.-.|..- |- .-|||-+|..
T Consensus 107 Rlt~eD~~~I~~ai--------eyl~L~~l~dryLd~LSGGQr---QR--AfIAMVlaQd 153 (252)
T COG4604 107 RLTKEDRRIINEAI--------EYLHLEDLSDRYLDELSGGQR---QR--AFIAMVLAQD 153 (252)
T ss_pred CCCHHHHHHHHHHH--------HHHCCCCHHHHHHHHCCCCHH---HH--HHHHEEEECC
T ss_conf 87757799999998--------774343267776775166045---53--4431044115
No 128
>pfam01231 IDO Indoleamine 2,3-dioxygenase.
Probab=22.71 E-value=41 Score=12.32 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999765311210001888886443310002111188999972963233788999999999
Q gi|254780502|r 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 (954)
Q Consensus 627 ~avr~LDnVId~n~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e 688 (954)
..+-+||.+..+..+|...-+ + .++.+|..|+ .|=-..+++|...+-+
T Consensus 264 SiI~~lD~~LgV~H~~~~~~~------~-------~~~~fL~emR-~YMP~~HR~FL~~l~~ 311 (407)
T pfam01231 264 SLIQFLDILLGIEHSPTGERK------P-------SKAGFLQEMR-NYMPGPHRRFLEHLES 311 (407)
T ss_pred HHHHHHHHHHCCCCCCCCCCC------C-------HHHHHHHHHH-HHCCHHHHHHHHHHHH
T ss_conf 489999998187546777788------7-------2899999998-4088989999999983
No 129
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=22.60 E-value=41 Score=12.30 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=28.8
Q ss_pred HHHCCCCCCCCCCHHEEEEECC--CCC--EEEECHHHHHHH
Q ss_conf 7838898847560120345326--761--366465899989
Q gi|254780502|r 774 NICGVSQSIDPSYQNLYVKSNM--SGD--FTVVNSFLVNEL 810 (954)
Q Consensus 774 ~i~g~s~gIEP~~a~~y~r~~~--~G~--~~~vn~~l~~~l 810 (954)
+|.|--+||=|+.+++--|... .|. ++-=||||.+|.
T Consensus 485 IMIGpGTGvAPFRaF~QeR~~~~A~GknWLFFGnpHF~~DF 525 (628)
T TIGR01931 485 IMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDF 525 (628)
T ss_pred EEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCH
T ss_conf 87368778000023578876348998625321788713213
No 130
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family; InterPro: IPR014296 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This family of RNA polymerase sigma factors is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors, as two proteins from this family are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these do not apparently represent the same two sigma factors in each species). One of these proteins is designated as SigM in B. subtilis (SP: SIGM_BACSU) and is activated by various stressors , .; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=22.56 E-value=35 Score=12.80 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHH
Q ss_conf 99999999999999850667898521145489999998612089999-98890
Q gi|254780502|r 70 DIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR-EYVLY 121 (954)
Q Consensus 70 ~~v~~lt~~Vv~~i~~~~~~~~~~~VE~IQD~VE~~LM~~g~~~VAk-aYILY 121 (954)
.++++|+++.-=+. .+||+.+.|.= =++.=.|.||+ +||=|
T Consensus 25 ~~AEDL~QETF~~a--------~~H~~~~~~~~---~ikpWLf~iA~NaFID~ 66 (162)
T TIGR02950 25 HLAEDLLQETFLKA--------YIHIHSFKDIE---SIKPWLFRIARNAFIDW 66 (162)
T ss_pred HHHHHHHHHHHHHH--------HHHHCCCCCCC---CCCCHHHHHHHHHHHHC
T ss_conf 57888877799888--------64311204720---00634567666310100
No 131
>pfam01894 UPF0047 Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.
Probab=21.57 E-value=24 Score=14.02 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
Q ss_conf 8999999984120443011077436877838
Q gi|254780502|r 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG 777 (954)
Q Consensus 747 ~~Lr~~i~~~G~RNs~l~aiAPT~t~S~i~g 777 (954)
+.+++-|++.|++|..++...|-.|.|++.+
T Consensus 5 ~~V~~~v~~sgi~~Gi~~v~~~HTTa~i~in 35 (118)
T pfam01894 5 DEVREAVEESGVKNGLVHVFVPHTTASLTIN 35 (118)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCEEEEEC
T ss_conf 8999999980986657999957871699983
No 132
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular; InterPro: IPR010915 This entry represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting..
Probab=21.21 E-value=19 Score=14.76 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=44.4
Q ss_pred HHHHHCC-CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCH
Q ss_conf 4331000-211118899997296323378899999999998577999789875311778876678121387624
Q gi|254780502|r 651 HTHRAIG-LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 (954)
Q Consensus 651 ~~~R~iG-lGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~ 723 (954)
..-|+++ |+|=|==|=...+| ..++|..++--|-|.+..+=++-++ |-|-.|.||+|-+-++|.
T Consensus 342 ~~It~~ALltvEGEnDDIsg~G---QT~AA~~LCtgIpe~~k~~~~~pgv------GHYGvF~GsrfR~~I~P~ 406 (414)
T TIGR01849 342 KAITKVALLTVEGENDDISGLG---QTKAALKLCTGIPEDMKRHYLQPGV------GHYGVFSGSRFREEIYPR 406 (414)
T ss_pred HHCCEEEEEEECCCCCCCCCCH---HHHHHHHHCCCCCHHHHHHHCCCCC------CEEEEECCCCCCCCCCCH
T ss_conf 3413454344326522337403---7899998437987688775156887------313543684001136606
No 133
>pfam01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumour cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Probab=21.18 E-value=43 Score=12.10 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=9.2
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2210022223211025476641358
Q gi|254780502|r 359 FNSGTRHPQLSSCFLTTVPDDLYGI 383 (954)
Q Consensus 359 ~Nagt~~~qlsSCfl~~v~Dsl~~I 383 (954)
..-|+....+-|+|-....-+.-+|
T Consensus 28 ~~~G~~~~~~~~~fPs~T~p~~~Sl 52 (340)
T pfam01663 28 AKEGVSAPYLTPVFPTLTFPNHYTI 52 (340)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9689563765778997046448898
No 134
>TIGR00244 TIGR00244 transcriptional regulator, NrdR family; InterPro: IPR003796 Ribonucleotide reductases (RNRs) are essential enzymes which catalyse the reduction of ribonucleotides to their respective deoxyribonucleotides, thus providing the precursors necessary for DNA synthesis . Proteins in this entry are orthologues of the novel transcriptional regulator NrdR (O86848 from SWISSPROT) from Streptomyces coelicolor. This protein negatively regulates the expression of the RNR genes in this organism . NrdR, like all proteins in this entry, contains an ATP-cone domain which may regulate DNA-binding activity by sensing deoxyribonucleotides , though since this domain resembles the allosteric effector region of some RNRs it has also been suggested that it may allow NrdR to directly modulate the activity of some reductases, in addition to its function as a transcriptional regulator . NrdR-type proteins have been detected in a large number of bacterial genomes . They are encoded only once in any particular genome and are usually clustered near RNR genes or genes involved in chromosome replication. Currently, only a single archaeon Natronomonas pharaonis DSM 2160 has been shown to encode one of these proteins. .
Probab=20.98 E-value=44 Score=12.07 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred CEEEEECCCCEECCCHHHHHHHHHHHHCCC
Q ss_conf 228980599760259899999999985166
Q gi|254780502|r 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL 173 (954)
Q Consensus 144 ~l~V~krDG~~e~~d~~ki~~~i~~ac~gL 173 (954)
...+++.||..++|+.+++..-+..+|..-
T Consensus 48 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 77 (147)
T TIGR00244 48 PPTVVKKDGVREPFNREKLLRGLLRACEKR 77 (147)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 665540245300211778888888876305
No 135
>KOG2703 consensus
Probab=20.84 E-value=44 Score=12.05 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=15.3
Q ss_pred CHHHHHHHHHH--HHHHHHHHCCCCCCHHHHHHHCCCCCC-CC
Q ss_conf 72899999998--412044301107743687783889884-75
Q gi|254780502|r 745 PWDELKKRVKT--IGMRNSNCMAIAPTATIANICGVSQSI-DP 784 (954)
Q Consensus 745 dW~~Lr~~i~~--~G~RNs~l~aiAPT~t~S~i~g~s~gI-EP 784 (954)
.|.+..++..+ .|-+-.++.-=-|+|. |.+..++.-. +|
T Consensus 385 ~~~~F~~~l~~~i~~~~~~tlIldDp~~~-syvq~~~ap~~dp 426 (460)
T KOG2703 385 RWQEFLAKLDDIIAGKLPATLILDDPLGN-SYVQNVYAPDDDP 426 (460)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCCCCCCCC
T ss_conf 99999999999971666459996067767-2101035899987
No 136
>pfam04271 consensus
Probab=20.77 E-value=44 Score=12.04 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=7.2
Q ss_pred CCCCHHHHHHHH
Q ss_conf 187714677999
Q gi|254780502|r 212 KEPNYAKVTARF 223 (954)
Q Consensus 212 ~ePdy~~vAaRl 223 (954)
..|+|.|+.+-|
T Consensus 46 ~~~~~~Yi~~IL 57 (73)
T pfam04271 46 NKANFRYIQAIL 57 (73)
T ss_pred CCCCHHHHHHHH
T ss_conf 999879999999
No 137
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.71 E-value=44 Score=12.03 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=8.7
Q ss_pred HHHHCCCCHHHHHHHHHHC
Q ss_conf 3310002111188999972
Q gi|254780502|r 652 THRAIGLGLMGFQSALHLL 670 (954)
Q Consensus 652 ~~R~iGlGv~Glad~L~~~ 670 (954)
.+.+||-|+.+|+.+|..-
T Consensus 49 EyqkiG~af~~Ls~afe~d 67 (207)
T cd07669 49 EFQKLGNAFQAISHSFQLD 67 (207)
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999997269
No 138
>COG2926 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.68 E-value=44 Score=12.03 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 521145489999998612089999988909999999987
Q gi|254780502|r 93 VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 (954)
Q Consensus 93 ~~VE~IQD~VE~~LM~~g~~~VAkaYILYRe~Ra~~R~~ 131 (954)
.++|+||++.| -|+..|-+-.--||+--++-+++|.+
T Consensus 56 Ms~eei~~II~--~Mk~DYEdRVDDyiIknAelskerRe 92 (109)
T COG2926 56 MSIEEIQGIIE--SMKSDYEDRVDDYIIKNAELSKERRE 92 (109)
T ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97999999999--97877888778898821887288899
Done!