HHsearch alignment for GI: 254780502 and conserved domain: pfam11230
>pfam11230 DUF3029 Protein of unknown function (DUF3029). Some members in this family of proteins are annotated as ykkI. Currently no function is known.
Probab=91.86 E-value=1 Score=24.25 Aligned_cols=242 Identities=17% Similarity=0.211 Sum_probs=145.2
Q ss_pred EEEHHHHHHHHHHHHHHHCCCEEEEECHHHCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--C-
Q ss_conf 8668899999999998828812783311202221-24667034046752001366544332111255406862543--4-
Q gi|254780502|r 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N- 614 (954)
Q Consensus 539 ~i~A~~l~~~i~~~~~etG~P~i~f~D~~N~~~p-~~~~g~I~~sNlC~Ei~l~~~~~e~~vCnL~SiNL~~~v~~--~- 614 (954)
T Consensus 174 ~~TpDd~~~~A~~~~~~csKP~~aN-~~~~~~~~~~~~ygIvSCYN-----~Lp~~GGa---~TLvRlnL~~vA~~a~~~ 244 (487)
T pfam11230 174 EVTPDDFLRQAVKNILECSKPHFAN-YPMHAKDFGEKGYGIVSCYN-----SLPLGGGA---YTLVRLNLKEVAKKAESI 244 (487)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCCCEEEEEECC-----CCCCCCCC---CEEECCCHHHHHHHCCCH
T ss_conf 8892899999999989718940027-77578654878737998235-----66657873---110000099999863899
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHCC-----CCCHHH----HHHHHHHHHHHHCC-CCHHHHHHHHHH----CCC--CCC-C
Q ss_conf -47988855899999999765311-----210001----88888644331000-211118899997----296--323-3
Q gi|254780502|r 615 -QFDYDKLASTIRTAVRVLDNVID-----INCHTI----EKAKKSNHTHRAIG-LGLMGFQSALHL----LHI--PYA-S 676 (954)
Q Consensus 615 -~~D~~~l~~~v~~avr~LDnVId-----~n~yp~----~~~~~~~~~~R~iG-lGv~Glad~L~~----~gi--~Y~-S 676 (954)
T Consensus 245 ~dF~~~~LP~~~~~~~~~md~R~~Fl~EeS~FFessFLvkEGl--I~~drF~~MFGi~GlAEaVn~Ll~~eg~~~~yG~d 322 (487)
T pfam11230 245 EDFLDEVLPHYCQLMAELIDARIRFLVEESNFFESSFLVKEGL--ISEDRFTPMFGIYGLAEAVNILLEKEGLEERYGHD 322 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999877199999999999999998876256543214454055--34202430546767999999998265874446888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCHHHCCCCCCCCHHHCCHHHHHHHHHHH
Q ss_conf 78899999999998577999789875311778876678121387624466300552253345402102728999999984
Q gi|254780502|r 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 (954)
Q Consensus 677 ~ea~~~~~~i~e~i~~~a~~aS~~LAkErG~~~~f~gS~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~ 756 (954)
T Consensus 323 ~~An~Lg~~I~~~l~~~V~-----------~~~----~~Yc~~~------------------------------------ 351 (487)
T pfam11230 323 EEANELGHQISKTLDEIVA-----------STP----VKYCEGT------------------------------------ 351 (487)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------CCC----CCCCCCC------------------------------------
T ss_conf 2678999999999999996-----------687----7630354------------------------------------
Q ss_pred HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 12044301107743687783889884756012034532676136646589998998589868999999851996277644
Q gi|254780502|r 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 (954)
Q Consensus 757 G~RNs~l~aiAPT~t~S~i~g~s~gIEP~~a~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~i~~ 836 (954)
T Consensus 352 --~gr~l-LHA-Q~Gis~D~~vTPGvRIp~------------------------------------------G------- 378 (487)
T pfam11230 352 --GGRAL-LHA-QVGISLDKGVTPGVRIPY------------------------------------------G------- 378 (487)
T ss_pred --CCEEE-EEE-CCCCCCCCCCCCCCCCCC------------------------------------------C-------
T ss_conf --88789-972-246056789999760527------------------------------------------9-------
Q ss_pred CCHHHHHHCCCHHCCCHHHHHHHHHHHCCHHCCCEEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8867886505222068899999998520630052320475489---9989999999999972986797965884
Q gi|254780502|r 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 (954)
Q Consensus 837 ip~~~k~~f~ta~ei~~~~~i~~~a~~Q~~IDqsiS~tl~~~~---~t~~~i~~~y~~Aw~~GlKt~yy~R~~s 907 (954)
T Consensus 379 ------------~EP~~~~hl~~~A~~H~yf~sGisDIf~~DeT~k~NP~A~~di~kGAf~~G~R~fs~~~~~~ 440 (487)
T pfam11230 379 ------------EEPDPITHLQASAPFHQYFPSGISDILTFDETVKQNPEAVLDIIKGAFNLGYRYFTANVSSN 440 (487)
T ss_pred ------------CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf ------------99986999998503205678885322333046676979999999998755975898852788